Query 003585
Match_columns 809
No_of_seqs 357 out of 1534
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:13:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 7E-229 2E-233 1974.3 72.0 781 23-808 24-806 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-174 6E-179 1463.2 41.8 632 24-739 15-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 7.6E-91 1.6E-95 757.2 17.8 297 35-340 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.1E-37 2.5E-42 362.1 15.9 290 29-327 1-333 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.7 1.8E-18 3.8E-23 193.3 7.7 141 50-209 2-161 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.4 3.2E-12 6.8E-17 138.7 18.7 192 29-261 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.3 4E-10 8.8E-15 133.8 25.4 160 27-221 276-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.2 4.7E-10 1E-14 139.9 18.3 257 27-342 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.1 1.1E-09 2.5E-14 136.4 18.5 150 27-221 334-489 (1027)
10 COG3250 LacZ Beta-galactosidas 98.9 1.4E-08 3E-13 122.9 17.4 136 25-207 282-423 (808)
11 PF13364 BetaGal_dom4_5: Beta- 98.9 3.8E-09 8.3E-14 99.0 7.2 69 619-712 33-104 (111)
12 PF00150 Cellulase: Cellulase 98.8 6.3E-08 1.4E-12 102.6 13.5 162 38-221 3-172 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.7 1E-07 2.3E-12 89.3 9.6 84 460-550 24-110 (111)
14 PF02837 Glyco_hydro_2_N: Glyc 98.3 4.3E-06 9.2E-11 82.8 10.6 100 466-571 63-164 (167)
15 PF03198 Glyco_hydro_72: Gluca 98.1 3.2E-05 7E-10 84.1 14.3 157 23-217 5-179 (314)
16 smart00633 Glyco_10 Glycosyl h 98.0 1.4E-05 3E-10 85.4 8.2 116 81-221 3-125 (254)
17 TIGR03356 BGL beta-galactosida 97.7 6.2E-05 1.3E-09 86.4 8.0 97 58-166 54-151 (427)
18 PLN02705 beta-amylase 97.7 0.0001 2.3E-09 85.3 9.2 113 56-182 266-414 (681)
19 PLN02905 beta-amylase 97.7 0.00015 3.3E-09 84.2 9.5 113 56-182 284-432 (702)
20 PLN02801 beta-amylase 97.7 0.00016 3.5E-09 82.6 9.4 80 56-141 35-126 (517)
21 PLN00197 beta-amylase; Provisi 97.6 0.00046 9.9E-09 79.6 12.7 142 56-212 125-319 (573)
22 PLN02161 beta-amylase 97.6 0.00027 5.8E-09 80.8 9.6 83 56-142 115-207 (531)
23 PLN02803 beta-amylase 97.5 0.00032 6.9E-09 80.6 9.5 81 56-142 105-197 (548)
24 PF13204 DUF4038: Protein of u 97.5 0.00052 1.1E-08 74.9 10.9 225 33-287 2-274 (289)
25 PF02140 Gal_Lectin: Galactose 97.5 0.00011 2.4E-09 64.7 4.1 44 764-808 1-48 (80)
26 PF01373 Glyco_hydro_14: Glyco 97.2 0.00041 8.9E-09 78.0 5.4 114 59-182 17-152 (402)
27 PF00331 Glyco_hydro_10: Glyco 96.9 0.0012 2.7E-08 72.9 6.0 156 45-222 11-179 (320)
28 PF00232 Glyco_hydro_1: Glycos 96.9 0.00089 1.9E-08 77.5 4.9 97 58-166 58-156 (455)
29 COG3693 XynA Beta-1,4-xylanase 96.8 0.0033 7.1E-08 68.6 8.1 133 67-222 55-194 (345)
30 PRK10150 beta-D-glucuronidase; 96.8 0.0065 1.4E-07 72.8 11.1 100 468-573 62-179 (604)
31 PF02837 Glyco_hydro_2_N: Glyc 96.7 0.0031 6.8E-08 62.4 6.1 67 619-712 66-136 (167)
32 PF07745 Glyco_hydro_53: Glyco 96.7 0.0071 1.5E-07 67.3 9.4 138 61-222 27-178 (332)
33 PRK10340 ebgA cryptic beta-D-g 96.6 0.0079 1.7E-07 76.2 10.1 94 471-573 109-206 (1021)
34 PRK15014 6-phospho-beta-glucos 96.4 0.0071 1.5E-07 70.5 7.5 95 59-165 70-167 (477)
35 PF14488 DUF4434: Domain of un 96.3 0.061 1.3E-06 54.2 12.7 135 53-217 15-157 (166)
36 PRK09852 cryptic 6-phospho-bet 96.3 0.0088 1.9E-07 69.7 7.5 96 58-165 71-169 (474)
37 PRK09525 lacZ beta-D-galactosi 96.2 0.018 3.9E-07 73.0 10.2 95 470-573 119-218 (1027)
38 COG2730 BglC Endoglucanase [Ca 96.2 0.017 3.8E-07 66.0 9.1 115 56-188 66-193 (407)
39 PLN02998 beta-glucosidase 96.1 0.0048 1E-07 72.2 4.4 100 58-165 82-183 (497)
40 PRK13511 6-phospho-beta-galact 96.1 0.014 3E-07 68.1 7.9 96 58-165 54-150 (469)
41 PLN02814 beta-glucosidase 96.0 0.0057 1.2E-07 71.7 4.3 96 58-165 77-174 (504)
42 TIGR01233 lacG 6-phospho-beta- 96.0 0.017 3.7E-07 67.2 8.1 96 58-165 53-149 (467)
43 PRK09593 arb 6-phospho-beta-gl 95.9 0.0098 2.1E-07 69.4 5.3 100 58-165 73-175 (478)
44 PRK09589 celA 6-phospho-beta-g 95.8 0.01 2.2E-07 69.3 4.9 100 58-165 67-169 (476)
45 PLN02849 beta-glucosidase 95.7 0.0094 2E-07 69.9 4.5 100 58-165 79-180 (503)
46 COG3867 Arabinogalactan endo-1 95.4 0.066 1.4E-06 58.0 8.9 109 60-187 65-182 (403)
47 PF02055 Glyco_hydro_30: O-Gly 94.5 0.3 6.4E-06 57.5 12.0 332 41-403 74-490 (496)
48 KOG2230 Predicted beta-mannosi 94.2 0.42 9.1E-06 55.8 11.8 149 34-222 328-494 (867)
49 smart00812 Alpha_L_fucos Alpha 94.2 8.6 0.00019 44.0 22.5 247 51-349 77-338 (384)
50 PF14871 GHL6: Hypothetical gl 94.0 0.29 6.2E-06 47.6 8.9 97 63-164 5-123 (132)
51 COG2723 BglB Beta-glucosidase/ 93.7 0.063 1.4E-06 61.9 4.3 96 58-165 59-157 (460)
52 TIGR01515 branching_enzym alph 92.5 1.4 3E-05 53.3 13.5 153 64-219 163-347 (613)
53 PF02638 DUF187: Glycosyl hydr 91.6 0.74 1.6E-05 51.0 9.0 118 56-184 17-162 (311)
54 COG3934 Endo-beta-mannanase [C 90.7 0.21 4.6E-06 57.3 3.6 157 35-209 3-168 (587)
55 PRK05402 glycogen branching en 90.5 2.4 5.2E-05 52.4 12.7 54 64-117 272-335 (726)
56 PRK09936 hypothetical protein; 90.2 0.69 1.5E-05 50.5 6.9 58 53-116 33-91 (296)
57 smart00642 Aamy Alpha-amylase 90.0 0.82 1.8E-05 46.0 6.9 68 57-124 18-97 (166)
58 TIGR00542 hxl6Piso_put hexulos 89.5 4.2 9.1E-05 43.7 12.3 131 57-215 15-149 (279)
59 PRK14706 glycogen branching en 89.1 5 0.00011 48.8 13.8 145 64-219 174-356 (639)
60 PLN02447 1,4-alpha-glucan-bran 88.3 10 0.00022 47.0 15.7 62 57-119 250-322 (758)
61 PF05913 DUF871: Bacterial pro 87.5 1 2.3E-05 50.8 6.2 70 46-121 2-71 (357)
62 cd00019 AP2Ec AP endonuclease 87.1 4.5 9.7E-05 43.5 10.7 98 58-184 10-108 (279)
63 PRK12568 glycogen branching en 87.1 11 0.00024 46.5 15.0 59 62-123 274-345 (730)
64 PRK14705 glycogen branching en 86.8 10 0.00022 49.4 14.9 53 62-117 770-835 (1224)
65 PRK12313 glycogen branching en 86.4 8 0.00017 47.0 13.4 52 63-117 176-240 (633)
66 PRK13210 putative L-xylulose 5 86.2 5.4 0.00012 42.7 10.7 131 59-215 17-149 (284)
67 PF14307 Glyco_tran_WbsX: Glyc 85.2 9.9 0.00021 42.7 12.5 138 55-221 55-197 (345)
68 COG1649 Uncharacterized protei 84.7 4.6 9.9E-05 46.5 9.5 123 55-187 61-210 (418)
69 PF01261 AP_endonuc_2: Xylose 83.2 1.8 3.8E-05 43.5 5.0 125 64-215 1-128 (213)
70 PRK01060 endonuclease IV; Prov 81.0 31 0.00066 37.0 13.8 93 60-181 14-109 (281)
71 PRK09997 hydroxypyruvate isome 80.7 24 0.00053 37.4 12.8 49 50-115 10-58 (258)
72 TIGR02631 xylA_Arthro xylose i 80.7 18 0.00039 41.4 12.4 92 58-165 32-125 (382)
73 PRK09856 fructoselysine 3-epim 79.7 26 0.00056 37.4 12.7 129 59-215 14-145 (275)
74 PF01229 Glyco_hydro_39: Glyco 79.1 5.2 0.00011 47.0 7.6 66 47-118 28-105 (486)
75 PRK09441 cytoplasmic alpha-amy 79.1 3.4 7.3E-05 48.4 6.1 61 57-117 18-101 (479)
76 PF13200 DUF4015: Putative gly 79.0 7.3 0.00016 43.4 8.3 112 56-168 11-137 (316)
77 PF00128 Alpha-amylase: Alpha 78.9 2 4.2E-05 45.8 3.8 57 61-117 7-72 (316)
78 PRK09989 hypothetical protein; 78.2 20 0.00042 38.2 11.1 42 60-115 17-58 (258)
79 TIGR03234 OH-pyruv-isom hydrox 77.6 40 0.00087 35.6 13.2 43 59-115 15-57 (254)
80 TIGR01531 glyc_debranch glycog 77.1 7.4 0.00016 50.8 8.5 115 35-155 104-238 (1464)
81 PRK13209 L-xylulose 5-phosphat 76.0 18 0.0004 38.7 10.2 125 59-215 22-154 (283)
82 KOG0496 Beta-galactosidase [Ca 75.8 0.59 1.3E-05 55.8 -1.4 64 728-807 309-373 (649)
83 PRK13398 3-deoxy-7-phosphohept 75.4 10 0.00022 41.2 8.0 75 35-117 20-98 (266)
84 PF02679 ComA: (2R)-phospho-3- 75.2 3.4 7.3E-05 44.4 4.2 52 57-118 83-134 (244)
85 TIGR02402 trehalose_TreZ malto 74.9 5 0.00011 47.9 6.0 54 61-117 114-180 (542)
86 PF13199 Glyco_hydro_66: Glyco 73.6 47 0.001 40.0 13.5 160 56-221 116-308 (559)
87 PF14683 CBM-like: Polysacchar 73.4 3.3 7.2E-05 41.9 3.5 58 644-712 91-149 (167)
88 smart00518 AP2Ec AP endonuclea 73.3 47 0.001 35.4 12.5 101 48-181 3-104 (273)
89 COG0296 GlgB 1,4-alpha-glucan 72.9 7.4 0.00016 47.1 6.7 57 56-116 163-233 (628)
90 PLN02960 alpha-amylase 71.4 1.1E+02 0.0024 38.8 16.3 57 61-117 420-486 (897)
91 TIGR02403 trehalose_treC alpha 71.1 5.9 0.00013 47.3 5.4 62 56-119 25-97 (543)
92 PF08531 Bac_rhamnosid_N: Alph 70.8 17 0.00036 36.7 7.9 56 494-550 6-68 (172)
93 PF11324 DUF3126: Protein of u 69.4 12 0.00026 32.0 5.3 33 500-532 25-59 (63)
94 PRK09505 malS alpha-amylase; R 68.9 8.7 0.00019 47.2 6.3 59 60-118 232-313 (683)
95 TIGR02104 pulA_typeI pullulana 68.6 8.5 0.00018 46.6 6.1 53 62-117 168-249 (605)
96 KOG4729 Galactoside-binding le 67.8 7.2 0.00016 42.0 4.6 48 759-808 43-96 (265)
97 PF01791 DeoC: DeoC/LacD famil 67.8 1.8 4E-05 45.7 0.2 53 61-116 79-131 (236)
98 PRK10933 trehalose-6-phosphate 67.8 10 0.00022 45.5 6.4 57 58-117 33-101 (551)
99 TIGR03849 arch_ComA phosphosul 67.4 11 0.00023 40.4 5.8 53 57-119 70-122 (237)
100 PF03659 Glyco_hydro_71: Glyco 67.0 19 0.00042 41.2 8.2 54 55-117 14-67 (386)
101 cd06593 GH31_xylosidase_YicI Y 66.4 15 0.00032 40.5 6.9 68 55-122 21-91 (308)
102 PRK10785 maltodextrin glucosid 65.9 12 0.00025 45.4 6.5 57 61-117 182-246 (598)
103 COG3589 Uncharacterized conser 65.6 13 0.00029 41.5 6.2 72 46-124 4-76 (360)
104 TIGR02456 treS_nterm trehalose 63.6 9.5 0.00021 45.5 5.1 60 56-117 26-96 (539)
105 PF06832 BiPBP_C: Penicillin-B 63.3 11 0.00024 33.6 4.3 49 495-551 35-84 (89)
106 PRK12677 xylose isomerase; Pro 63.2 1.1E+02 0.0023 35.3 13.2 89 59-165 32-124 (384)
107 KOG0626 Beta-glucosidase, lact 62.3 12 0.00025 44.3 5.3 112 59-180 92-207 (524)
108 PRK14582 pgaB outer membrane N 61.7 44 0.00096 41.1 10.2 112 57-186 333-468 (671)
109 PF02065 Melibiase: Melibiase; 61.4 90 0.0019 36.0 12.2 90 50-139 50-148 (394)
110 cd06595 GH31_xylosidase_XylS-l 61.3 89 0.0019 34.2 11.8 64 56-119 23-96 (292)
111 cd06592 GH31_glucosidase_KIAA1 61.3 71 0.0015 35.2 11.1 69 53-124 25-97 (303)
112 COG3623 SgaU Putative L-xylulo 60.7 65 0.0014 34.6 9.8 126 56-214 16-150 (287)
113 cd06589 GH31 The enzymes of gl 60.5 1.5E+02 0.0032 31.9 13.2 65 56-121 22-90 (265)
114 PRK08673 3-deoxy-7-phosphohept 59.8 28 0.0006 39.2 7.6 76 35-117 86-164 (335)
115 TIGR02100 glgX_debranch glycog 59.8 40 0.00087 41.6 9.6 55 63-117 189-265 (688)
116 PF08308 PEGA: PEGA domain; I 58.3 9.3 0.0002 32.5 2.8 39 495-543 3-41 (71)
117 PLN02361 alpha-amylase 57.5 22 0.00047 41.1 6.4 56 62-117 33-96 (401)
118 PRK14510 putative bifunctional 57.5 15 0.00032 48.2 5.7 56 62-117 191-267 (1221)
119 cd04908 ACT_Bt0572_1 N-termina 57.4 35 0.00075 28.5 6.1 55 57-115 12-66 (66)
120 TIGR02401 trehalose_TreY malto 54.8 26 0.00056 44.0 6.8 64 56-119 14-87 (825)
121 COG1306 Uncharacterized conser 53.5 27 0.00058 38.6 5.8 59 56-117 75-144 (400)
122 PF02449 Glyco_hydro_42: Beta- 51.8 35 0.00077 38.5 6.9 87 245-343 286-373 (374)
123 cd06568 GH20_SpHex_like A subg 51.8 50 0.0011 37.0 8.0 72 33-117 3-95 (329)
124 PRK14507 putative bifunctional 49.2 36 0.00078 45.9 7.1 62 55-119 755-829 (1693)
125 cd06602 GH31_MGAM_SI_GAA This 48.6 1.7E+02 0.0038 32.8 11.7 74 50-124 13-93 (339)
126 PRK14511 maltooligosyl trehalo 48.5 38 0.00082 42.8 6.8 64 55-122 17-94 (879)
127 PRK03705 glycogen debranching 48.4 28 0.0006 42.8 5.7 55 63-117 184-262 (658)
128 COG1735 Php Predicted metal-de 47.8 1.4E+02 0.0031 33.2 10.3 154 27-222 16-173 (316)
129 TIGR00677 fadh2_euk methylenet 47.6 67 0.0015 35.2 8.0 108 44-165 130-250 (281)
130 PF04914 DltD_C: DltD C-termin 46.2 37 0.00081 33.1 5.1 57 97-178 36-93 (130)
131 cd06545 GH18_3CO4_chitinase Th 45.5 89 0.0019 33.3 8.4 75 88-188 36-111 (253)
132 smart00481 POLIIIAc DNA polyme 45.5 59 0.0013 27.2 5.7 43 60-115 17-59 (67)
133 PLN00196 alpha-amylase; Provis 45.4 44 0.00096 38.9 6.5 59 61-119 47-114 (428)
134 PF12876 Cellulase-like: Sugar 45.2 38 0.00083 30.2 4.7 48 172-219 6-62 (88)
135 cd02742 GH20_hexosaminidase Be 45.0 63 0.0014 35.6 7.4 60 55-117 13-92 (303)
136 cd06591 GH31_xylosidase_XylS X 43.9 50 0.0011 36.7 6.4 65 56-121 22-90 (319)
137 PF14307 Glyco_tran_WbsX: Glyc 43.6 2.5E+02 0.0053 31.6 11.9 44 32-77 150-194 (345)
138 cd06565 GH20_GcnA-like Glycosy 43.3 1.4E+02 0.0029 33.1 9.6 67 56-125 15-88 (301)
139 cd06547 GH85_ENGase Endo-beta- 42.7 43 0.00092 37.8 5.7 115 74-219 32-148 (339)
140 KOG2024 Beta-Glucuronidase GUS 42.7 33 0.00072 37.3 4.5 50 467-517 84-133 (297)
141 PF08531 Bac_rhamnosid_N: Alph 42.3 31 0.00067 34.8 4.1 22 639-660 7-28 (172)
142 PLN03059 beta-galactosidase; P 41.9 45 0.00097 41.9 6.0 40 472-518 620-659 (840)
143 TIGR02102 pullulan_Gpos pullul 41.6 47 0.001 43.1 6.4 21 97-117 555-575 (1111)
144 PRK08645 bifunctional homocyst 41.4 82 0.0018 38.4 8.2 110 41-165 461-578 (612)
145 cd06416 GH25_Lys1-like Lys-1 i 40.5 60 0.0013 33.2 6.0 89 46-137 54-157 (196)
146 TIGR02455 TreS_stutzeri trehal 39.9 65 0.0014 39.4 6.8 76 56-135 76-176 (688)
147 cd06598 GH31_transferase_CtsZ 39.7 69 0.0015 35.5 6.7 67 56-122 22-95 (317)
148 smart00854 PGA_cap Bacterial c 39.7 2.2E+02 0.0048 30.0 10.3 49 53-114 59-107 (239)
149 PRK09432 metF 5,10-methylenete 39.2 82 0.0018 34.8 7.1 88 63-166 168-266 (296)
150 COG5520 O-Glycosyl hydrolase [ 38.3 5.8E+02 0.013 29.4 13.2 86 106-212 111-206 (433)
151 cd06603 GH31_GANC_GANAB_alpha 38.2 68 0.0015 35.9 6.4 68 56-124 22-91 (339)
152 PF10566 Glyco_hydro_97: Glyco 38.0 1.1E+02 0.0023 33.7 7.7 116 55-178 29-160 (273)
153 KOG1412 Aspartate aminotransfe 37.7 63 0.0014 36.2 5.7 119 56-222 131-250 (410)
154 PRK09856 fructoselysine 3-epim 36.0 53 0.0011 35.0 4.9 59 58-120 90-153 (275)
155 PF05763 DUF835: Protein of un 35.1 2.2E+02 0.0049 27.9 8.7 105 89-214 1-113 (136)
156 TIGR00419 tim triosephosphate 35.1 69 0.0015 33.6 5.4 44 64-117 74-117 (205)
157 cd06563 GH20_chitobiase-like T 34.7 2E+02 0.0043 32.5 9.5 72 33-117 3-106 (357)
158 PRK09875 putative hydrolase; P 34.6 3.1E+02 0.0067 30.3 10.6 89 28-136 7-95 (292)
159 cd06601 GH31_lyase_GLase GLase 34.3 2.1E+02 0.0045 32.2 9.4 72 50-122 13-89 (332)
160 cd06600 GH31_MGAM-like This fa 34.2 84 0.0018 34.9 6.3 72 50-122 13-89 (317)
161 PRK12858 tagatose 1,6-diphosph 33.3 40 0.00087 38.1 3.6 66 49-117 98-163 (340)
162 PRK09267 flavodoxin FldA; Vali 33.2 2.9E+02 0.0062 27.3 9.4 74 38-114 44-117 (169)
163 cd06599 GH31_glycosidase_Aec37 33.2 1.2E+02 0.0025 33.8 7.1 66 57-122 28-98 (317)
164 PF14701 hDGE_amylase: glucano 32.8 1.2E+02 0.0027 35.2 7.4 95 56-156 20-131 (423)
165 PF14587 Glyco_hydr_30_2: O-Gl 32.8 2.1E+02 0.0045 33.0 9.1 117 86-221 93-226 (384)
166 cd01299 Met_dep_hydrolase_A Me 32.5 1.1E+02 0.0024 33.6 6.8 59 56-117 118-180 (342)
167 cd06418 GH25_BacA-like BacA is 32.4 1.6E+02 0.0035 30.9 7.7 90 56-167 50-140 (212)
168 PF07691 PA14: PA14 domain; I 32.2 1.7E+02 0.0038 27.5 7.4 70 472-549 47-122 (145)
169 COG0366 AmyA Glycosidases [Car 32.0 56 0.0012 37.7 4.7 56 62-117 33-97 (505)
170 TIGR00433 bioB biotin syntheta 31.8 68 0.0015 34.7 5.0 52 61-115 123-176 (296)
171 PF02228 Gag_p19: Major core p 31.7 18 0.00038 32.2 0.3 37 56-109 20-56 (92)
172 PLN02877 alpha-amylase/limit d 31.4 90 0.0019 40.0 6.4 21 97-117 466-486 (970)
173 PF01120 Alpha_L_fucos: Alpha- 31.3 8E+02 0.017 27.6 15.3 239 56-347 92-343 (346)
174 cd06604 GH31_glucosidase_II_Ma 31.3 1E+02 0.0023 34.4 6.5 72 50-122 13-89 (339)
175 PRK00042 tpiA triosephosphate 31.2 77 0.0017 34.3 5.1 49 64-118 79-127 (250)
176 cd02940 DHPD_FMN Dihydropyrimi 30.8 3.5E+02 0.0075 29.7 10.3 29 56-88 111-139 (299)
177 cd00311 TIM Triosephosphate is 30.7 94 0.002 33.4 5.7 49 64-118 77-125 (242)
178 cd04740 DHOD_1B_like Dihydroor 30.6 1.2E+02 0.0026 33.1 6.6 60 56-119 100-163 (296)
179 PF12733 Cadherin-like: Cadher 30.2 1.1E+02 0.0024 26.9 5.2 55 475-546 16-71 (88)
180 PRK13210 putative L-xylulose 5 29.9 81 0.0018 33.6 5.1 59 58-117 94-153 (284)
181 PF08924 DUF1906: Domain of un 29.9 1.4E+02 0.003 29.2 6.2 91 56-166 36-127 (136)
182 cd02810 DHOD_DHPD_FMN Dihydroo 29.8 1.1E+02 0.0023 33.2 6.1 60 56-119 109-171 (289)
183 TIGR01361 DAHP_synth_Bsub phos 29.8 1.1E+02 0.0024 33.2 6.1 80 29-117 14-96 (260)
184 PF01261 AP_endonuc_2: Xylose 29.6 62 0.0013 32.2 4.0 63 57-120 70-135 (213)
185 cd08560 GDPD_EcGlpQ_like_1 Gly 29.3 1.3E+02 0.0029 34.1 6.9 53 59-117 246-298 (356)
186 cd06562 GH20_HexA_HexB-like Be 29.3 2.8E+02 0.0061 31.3 9.4 72 33-117 3-90 (348)
187 TIGR02103 pullul_strch alpha-1 28.7 85 0.0018 40.0 5.6 21 97-117 404-424 (898)
188 PF08306 Glyco_hydro_98M: Glyc 28.2 63 0.0014 36.1 3.8 59 44-113 104-169 (324)
189 PRK12331 oxaloacetate decarbox 27.4 1.2E+02 0.0026 35.6 6.3 56 50-117 88-143 (448)
190 PTZ00372 endonuclease 4-like p 27.4 9.2E+02 0.02 28.2 13.2 78 62-165 145-228 (413)
191 PF01055 Glyco_hydro_31: Glyco 27.3 1.2E+02 0.0026 34.9 6.3 69 56-125 41-111 (441)
192 PRK06703 flavodoxin; Provision 27.2 2.7E+02 0.0058 27.0 7.8 103 38-165 46-148 (151)
193 PRK09997 hydroxypyruvate isome 27.0 91 0.002 33.1 4.8 60 58-117 85-144 (258)
194 COG1523 PulA Type II secretory 26.9 86 0.0019 38.8 5.1 54 64-117 206-285 (697)
195 cd06597 GH31_transferase_CtsY 26.6 1.5E+02 0.0033 33.2 6.8 73 50-122 13-110 (340)
196 PRK13209 L-xylulose 5-phosphat 26.2 3.7E+02 0.008 28.7 9.4 104 54-187 53-161 (283)
197 COG3320 Putative dehydrogenase 26.1 32 0.00069 39.3 1.2 36 100-136 176-214 (382)
198 TIGR00587 nfo apurinic endonuc 26.0 3.9E+02 0.0085 28.8 9.6 83 61-165 14-98 (274)
199 TIGR01676 GLDHase galactonolac 26.0 82 0.0018 37.9 4.6 42 176-217 375-419 (541)
200 TIGR00676 fadh2 5,10-methylene 25.9 2.9E+02 0.0063 30.0 8.6 109 43-165 125-246 (272)
201 PRK15492 triosephosphate isome 25.8 1.2E+02 0.0027 33.0 5.6 48 65-118 88-135 (260)
202 PLN02784 alpha-amylase 25.7 1.4E+02 0.003 37.9 6.5 57 61-117 524-588 (894)
203 PF03102 NeuB: NeuB family; I 25.4 1E+02 0.0022 33.2 4.8 65 54-118 52-121 (241)
204 KOG3833 Uncharacterized conser 25.2 77 0.0017 35.4 3.8 53 59-117 444-499 (505)
205 KOG4039 Serine/threonine kinas 25.2 1.3E+02 0.0028 31.4 5.1 69 48-123 99-172 (238)
206 COG2884 FtsE Predicted ATPase 25.2 54 0.0012 34.4 2.6 15 646-660 55-69 (223)
207 PF07755 DUF1611: Protein of u 25.1 44 0.00095 37.2 2.0 60 43-117 35-95 (301)
208 PF01075 Glyco_transf_9: Glyco 25.0 53 0.0011 34.2 2.6 76 41-119 106-194 (247)
209 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.8 1.7E+02 0.0038 31.8 6.6 49 55-115 88-136 (275)
210 PRK10076 pyruvate formate lyas 24.7 2.2E+02 0.0047 30.0 7.0 126 56-215 52-209 (213)
211 PF13380 CoA_binding_2: CoA bi 24.4 1.7E+02 0.0038 27.5 5.7 44 55-114 63-106 (116)
212 TIGR01698 PUNP purine nucleoti 24.4 1.1E+02 0.0024 32.9 4.8 40 37-76 47-87 (237)
213 TIGR02635 RhaI_grampos L-rhamn 24.1 6.8E+02 0.015 28.8 11.3 158 26-217 10-173 (378)
214 PRK14567 triosephosphate isome 23.9 1.4E+02 0.003 32.4 5.5 48 65-118 79-126 (253)
215 PF00282 Pyridoxal_deC: Pyrido 23.7 1.3E+02 0.0028 34.3 5.5 71 39-116 139-230 (373)
216 cd06570 GH20_chitobiase-like_1 23.7 2E+02 0.0043 32.1 6.9 72 33-117 3-88 (311)
217 COG5309 Exo-beta-1,3-glucanase 23.6 6.1E+02 0.013 28.1 10.0 119 56-222 61-179 (305)
218 PRK14040 oxaloacetate decarbox 23.4 1.4E+02 0.0031 36.2 6.1 54 50-115 89-142 (593)
219 TIGR00542 hxl6Piso_put hexulos 23.2 1.3E+02 0.0029 32.2 5.3 55 59-117 95-153 (279)
220 PTZ00333 triosephosphate isome 23.2 1.5E+02 0.0033 32.2 5.6 48 65-118 83-130 (255)
221 TIGR03234 OH-pyruv-isom hydrox 23.1 1.1E+02 0.0024 32.2 4.6 61 57-117 83-143 (254)
222 cd00537 MTHFR Methylenetetrahy 23.0 2.4E+02 0.0053 30.4 7.3 103 49-165 138-249 (274)
223 PLN02540 methylenetetrahydrofo 22.5 1.7E+02 0.0037 35.4 6.4 89 63-165 161-258 (565)
224 COG2515 Acd 1-aminocyclopropan 22.3 1.1E+03 0.023 26.7 11.8 190 97-338 76-271 (323)
225 COG2876 AroA 3-deoxy-D-arabino 22.2 2.9E+02 0.0062 30.4 7.3 58 56-117 57-116 (286)
226 cd03789 GT1_LPS_heptosyltransf 22.2 1.3E+02 0.0028 32.2 4.9 78 43-123 124-213 (279)
227 cd04882 ACT_Bt0572_2 C-termina 22.2 1.8E+02 0.0039 23.4 4.7 55 57-113 10-64 (65)
228 cd00544 CobU Adenosylcobinamid 21.9 6E+02 0.013 25.6 9.4 49 153-209 101-149 (169)
229 PRK10966 exonuclease subunit S 21.7 6.5E+02 0.014 29.1 10.7 84 43-139 42-135 (407)
230 cd04739 DHOD_like Dihydroorota 21.6 3.3E+02 0.0071 30.4 8.1 68 45-118 101-171 (325)
231 PRK07259 dihydroorotate dehydr 21.5 2.1E+02 0.0045 31.3 6.4 59 56-118 102-165 (301)
232 PF07172 GRP: Glycine rich pro 21.4 65 0.0014 29.8 2.1 18 7-24 5-22 (95)
233 PLN02389 biotin synthase 21.3 1.2E+02 0.0025 34.9 4.6 50 61-113 178-229 (379)
234 COG1082 IolE Sugar phosphate i 21.2 9.5E+02 0.021 25.1 12.0 51 56-115 13-63 (274)
235 PRK14566 triosephosphate isome 21.2 1.6E+02 0.0036 32.0 5.4 48 65-118 89-136 (260)
236 COG1891 Uncharacterized protei 20.8 31 0.00068 35.4 -0.1 66 43-116 116-186 (235)
237 COG0149 TpiA Triosephosphate i 20.7 1.8E+02 0.0039 31.6 5.5 48 65-118 82-129 (251)
238 cd07381 MPP_CapA CapA and rela 20.7 6.9E+02 0.015 26.1 10.0 126 61-215 67-210 (239)
239 PRK05265 pyridoxine 5'-phospha 20.4 1.6E+02 0.0035 31.7 5.0 50 56-123 111-161 (239)
240 COG0156 BioF 7-keto-8-aminopel 20.3 1.1E+02 0.0025 35.2 4.2 70 35-116 134-207 (388)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=7e-229 Score=1974.28 Aligned_cols=781 Identities=66% Similarity=1.180 Sum_probs=736.0
Q ss_pred cccceeEEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHH
Q 003585 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (809)
Q Consensus 23 ~~~~~~v~~d~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~f 102 (809)
.-.+.+|+||+++|+|||||++|+||+|||||++|++|+|+|+||||||+|||+||||||+|||+||+|||+|++||++|
T Consensus 24 ~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~F 103 (840)
T PLN03059 24 SHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKF 103 (840)
T ss_pred ccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHH
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003585 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (809)
Q Consensus 103 l~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QI 182 (809)
|++|||+||||||||||||||||++||||.||+++|+|++||+|++|+++|++|+++|+++|++++|+++|||||||+||
T Consensus 104 l~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQI 183 (840)
T PLN03059 104 IKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQI 183 (840)
T ss_pred HHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEeeCCCCCCcccccCCCCCccCCCCCCCCCCCccccccccccccc
Q 003585 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTE 262 (809)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~vi~t~ng~~~~~~~~~~p~~P~~~tE~w~Gwf~~ 262 (809)
|||||++..+|+.+|++||+||++|++++|++|||+||++.++++++++||||.+|+.|.++++.+|+||||||+|||++
T Consensus 184 ENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~ 263 (840)
T PLN03059 184 ENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTE 263 (840)
T ss_pred cccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhh
Confidence 99999987778889999999999999999999999999998888999999999999999988888999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 003585 263 FGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIK 342 (809)
Q Consensus 263 wG~~~~~r~~ed~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~ 342 (809)
||++++.|+++|+|+++++||++|+|++||||||||||||||||+++++|||||||||+|+|++|+|||.|||+||++++
T Consensus 264 wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~ 343 (840)
T PLN03059 264 FGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIK 343 (840)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999997789999999999999
Q ss_pred hhhccccCCCCcccCCCCccceeeeecCCcceeeeeeccCCCcceEEEeCCeeeecCCCceeecCCCCceecccceeeee
Q 003585 343 LCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQ 422 (809)
Q Consensus 343 ~~~~~l~~~~p~~~~~g~~~~~~vy~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~lp~~svsilpdc~~v~~nta~v~~q 422 (809)
.|+++|+..+|...+||+.+++++|...+ .|+||+.|++++.+.+|+|+|++|.||||||||||||++++|||+++++|
T Consensus 344 ~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q 422 (840)
T PLN03059 344 LCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQ 422 (840)
T ss_pred hcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccc
Confidence 99999998889888999999999999766 79999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccccccccCCCCcccccchhhhcCCCCCCccEEEEEEEeecCCCcccccCCCCCeeeecCcc
Q 003585 423 HTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAG 502 (809)
Q Consensus 423 ~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~ 502 (809)
++.++..+. ...+.|+++.|++.+...+.++++.+++||+++|+|.+|||||+|+|....++..++++.+++|+|.+++
T Consensus 423 ~~~~~~~~~-~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~ 501 (840)
T PLN03059 423 SSQMKMNPV-GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAG 501 (840)
T ss_pred cceeecccc-cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccC
Confidence 877644322 2456999999995443245688899999999999999999999999998777655677888999999999
Q ss_pred eEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecCCcccccCCCCccccceeccEEEccccCCCccCcc
Q 003585 503 HAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTW 582 (809)
Q Consensus 503 d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~Gr~NyG~~~~~~~kGI~G~V~l~g~~~~~~dLs~ 582 (809)
|++||||||+++|+++++..+..++++.+|+|+.|.|+|+||||||||+|||++|+++.|||+|+|+|+|++++++||++
T Consensus 502 d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~ 581 (840)
T PLN03059 502 HALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSG 581 (840)
T ss_pred cEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceeccc
Confidence 99999999999999999887888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEeecCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEeeCCCceEEEEECCeeeeeeee
Q 003585 583 QKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWM 662 (809)
Q Consensus 583 ~~W~y~vgL~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~~wYk~~F~~p~g~dp~~Ldl~g~gKG~vwVNG~niGRYWp 662 (809)
+.|.|+++|+||.++||.+++..+++|.+.+..+. ++||+|||++|++|++.|||||||+|||||+|||||+||||||+
T Consensus 582 ~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~ 660 (840)
T PLN03059 582 WKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWP 660 (840)
T ss_pred CccccccCccceeccccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccc
Confidence 99999999999999999876666889987654444 66899999999999999999999999999999999999999998
Q ss_pred ccc--cCCCcccccCCCcCCccccCCCCCCceeeeecCccccccCccEEEEEeecCCCCcceEEEeechhhhcccccccC
Q 003585 663 AYA--KGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHH 740 (809)
Q Consensus 663 ~~~--~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVvfEe~gg~p~~I~l~~~~~~~vc~~~~e~~ 740 (809)
.++ +|| +.|||+|+|+++||+||||+||||||||||+|||+|+|+||||||+|++|+.|+|+++++++||++|+|+|
T Consensus 661 ~~a~~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~ 739 (840)
T PLN03059 661 AYTAHGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQ 739 (840)
T ss_pred cccccCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccC
Confidence 753 567 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCCCCCeEEeecCCCCeeeEEEeeeeCCCcccCcCcccccccCCchHHHHhhhC
Q 003585 741 PTTDNNDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKAL 808 (809)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~Is~i~fASfG~p~G~Cg~f~~g~c~a~~s~~~v~k~~ 808 (809)
| ++++|++++....+...++++|+|+.|++||+|+|||||+|+|+|++|+.|+|||++|+++|+|+|
T Consensus 740 p-~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC 806 (840)
T PLN03059 740 P-ALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNC 806 (840)
T ss_pred C-ccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHC
Confidence 5 599999966654346799999999999999999999999999999999999999999999999999
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-174 Score=1463.24 Aligned_cols=632 Identities=62% Similarity=1.124 Sum_probs=592.5
Q ss_pred ccceeEEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHH
Q 003585 24 IQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFI 103 (809)
Q Consensus 24 ~~~~~v~~d~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl 103 (809)
..++.|+||+++|+|||+|++++||+|||||++|+||+|+|+|||++|+|+|+||||||.|||+||+|||+|++||++||
T Consensus 15 ~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFi 94 (649)
T KOG0496|consen 15 GSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFI 94 (649)
T ss_pred cceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHH
Confidence 33899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccc
Q 003585 104 KTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE 183 (809)
Q Consensus 104 ~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIE 183 (809)
++|++.|||||||+||||||||++||||.||+.+|+|.+||+|++|+++|++|+++|+++|| +|+++|||||||+|||
T Consensus 95 kl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIE 172 (649)
T KOG0496|consen 95 KLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIE 172 (649)
T ss_pred HHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEeeCCCCCCcccccCCCCCcc-CCCC-CCCCCCCcccccccccccc
Q 003585 184 NEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFS-PNKPYKPTLWTEAWSGWFT 261 (809)
Q Consensus 184 NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~vi~t~ng~~~-~~~~-~~~p~~P~~~tE~w~Gwf~ 261 (809)
||||.+..+|++.+++|++|.+.|+..++.+|||+||+|.|+|+++|++|||++| +.|. +++|++|+||||||+|||+
T Consensus 173 NEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~ 252 (649)
T KOG0496|consen 173 NEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFT 252 (649)
T ss_pred chhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhh
Confidence 9999988889999999999999999999999999999999999999999999999 9998 9999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHH
Q 003585 262 EFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAI 341 (809)
Q Consensus 262 ~wG~~~~~r~~ed~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i 341 (809)
+||++++.|++||+|+.|++|+++|+|++|||||||||||||||| ++.+|||||||||| |..|+|||+|+|.+|..+
T Consensus 253 ~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~ 329 (649)
T KOG0496|consen 253 HWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSY 329 (649)
T ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhh
Confidence 999999999999999999999999999999999999999999998 99999999999999 999999999999999999
Q ss_pred HhhhccccCCCCcccCCCCccceeeeecCCcceeeeeeccCCCcceEEEeCCeeeecCCCceeecCCCCceecccceeee
Q 003585 342 KLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAV 421 (809)
Q Consensus 342 ~~~~~~l~~~~p~~~~~g~~~~~~vy~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~lp~~svsilpdc~~v~~nta~v~~ 421 (809)
+.|++.+..+++...++|+.+++ |++||.|++....+.+.|++.+|.+|+|||+|||||++++||||++.+
T Consensus 330 d~~ep~lv~gd~~~~kyg~~~~~---------C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~ 400 (649)
T KOG0496|consen 330 DYCEPALVAGDITTAKYGNLREA---------CAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA 400 (649)
T ss_pred hhcCccccccCcccccccchhhH---------HHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc
Confidence 99999999999887777765544 999999999999999999999999999999999999999999999865
Q ss_pred eccccccccccccccccccccccccccCCCCcccccchhhhcCCCCCCccEEEEEEEeecCCCcccccCCCCCeeeec-C
Q 003585 422 QHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVE-S 500 (809)
Q Consensus 422 q~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~-~ 500 (809)
| |....||+++ |..++ .++|++|+|+++.+.+++ +.|+|. +
T Consensus 401 ~---------------~~~~~e~~~~-------------~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls 442 (649)
T KOG0496|consen 401 Q---------------WISFTEPIPS-------------EAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLS 442 (649)
T ss_pred c---------------cccccCCCcc-------------ccccC---cceEEEEEEeeccccCCC-------ceEeeccc
Confidence 3 6666676554 44433 677888888887655442 467788 9
Q ss_pred cceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecCCcccccCCCCccccceeccEEEccccCCCccC
Q 003585 501 AGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDL 580 (809)
Q Consensus 501 ~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~Gr~NyG~~~~~~~kGI~G~V~l~g~~~~~~dL 580 (809)
++|++||||||+++|+++++.....+.+.+++.|+.|.|+|+||||||||+||| +++++.|||+|+|+|+|. +|+
T Consensus 443 ~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l 517 (649)
T KOG0496|consen 443 LGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDL 517 (649)
T ss_pred ccceEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecc
Confidence 999999999999999999998888899999999999999999999999999999 889999999999999997 688
Q ss_pred ccCCcEEeecCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEeeCCCceEEEEECCeeeeee
Q 003585 581 TWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRY 660 (809)
Q Consensus 581 s~~~W~y~vgL~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~~wYk~~F~~p~g~dp~~Ldl~g~gKG~vwVNG~niGRY 660 (809)
++++|.|+++|+||.+.+|++++..+++|......+. .+|++||| +|++|++.+||||||.|||||+|||||+|||||
T Consensus 518 ~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRY 595 (649)
T KOG0496|consen 518 TWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRY 595 (649)
T ss_pred ceeecceecccccchhhccccccccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccc
Confidence 8889999999999999999998888999988765455 47999999 999999999999999999999999999999999
Q ss_pred eeccccCCCcccccCCCcCCccccCCCCCCceeeeecCccccccCccEEEEEeecCCCCcceEEEeechhhhccccccc
Q 003585 661 WMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEH 739 (809)
Q Consensus 661 Wp~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVvfEe~gg~p~~I~l~~~~~~~vc~~~~e~ 739 (809)
||++ | | |++|||||+|||++.|+||||||+|++|.+|+|+++++..+|+.++|+
T Consensus 596 W~~~-----------G-------------~-Q~~yhvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 596 WPSF-----------G-------------P-QRTYHVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred cCCC-----------C-------------C-ceEEECcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeecccC
Confidence 9974 6 8 556779999999999999999999999999999999999999998763
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=7.6e-91 Score=757.16 Aligned_cols=297 Identities=42% Similarity=0.811 Sum_probs=233.2
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003585 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (809)
Q Consensus 35 ~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (809)
+|+|||||++|+||||||+|+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCC
Q 003585 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLG 194 (809)
Q Consensus 115 lR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~ 194 (809)
|||||||||||++||+|.||.+++++++||+|+.|+++|++|+++|+++|+ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999952
Q ss_pred cchHHHHHHHHHHHHcCCCC-cceEeeCCC--------CCCcccccCCCCCccCC--------CCCCCCCCCcccccccc
Q 003585 195 AAGHAYVNWAAKMAVGLDTG-VPWVMCKED--------DAPDPVINSCNGFYCDA--------FSPNKPYKPTLWTEAWS 257 (809)
Q Consensus 195 ~~~~~y~~~l~~~~~~~g~~-vP~~~~~~~--------~~~~~vi~t~ng~~~~~--------~~~~~p~~P~~~tE~w~ 257 (809)
.++++||+.|++++++.+++ ++.++++.. ++++..+.+++++.|.. ..+.+|++|+|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 667777652 23443455555555532 12557889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcc----cccCcCCCCCCCCCCCCchhHHH
Q 003585 258 GWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFI----TTSYDYDAPLDEYGLMRQPKYGH 333 (809)
Q Consensus 258 Gwf~~wG~~~~~r~~ed~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~----~TSYDYdAPl~E~G~~~~pKy~~ 333 (809)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||||||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999955 799999999999999887654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 003585 334 LKQLHEA 340 (809)
Q Consensus 334 lr~l~~~ 340 (809)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999974
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=362.07 Aligned_cols=290 Identities=24% Similarity=0.324 Sum_probs=218.8
Q ss_pred EEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeecccchHHHHHHHHH
Q 003585 29 VTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (809)
Q Consensus 29 v~~d~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 107 (809)
|.+++..+++||+|++++||++||+|+|+++|.|+|+|||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999 99999999999999999 88998 999999
Q ss_pred HcCCEEEEccCc-ccccccCCCCCCeEecccCCeEee---------cCChhhHHHHHHHHHHHHHHHHccccccccCCce
Q 003585 108 RVGLYAHLRIGP-YVCAEWNFGGFPVWLKYVPGISFR---------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPI 177 (809)
Q Consensus 108 ~~GL~VilR~GP-yicaEw~~GG~P~WL~~~p~i~~R---------t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpI 177 (809)
+.||+||||||| .+|.+|..+++|.||..++.-..| .+++.|++++++.+++|.+++ +.+|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999987653333 345668888877555544443 4899999
Q ss_pred EEeccccccCCCcccCCcchHHHHHHHHHHHHcC-CCCcceEeeC-CCCCCc-ccccCCC-----CCcc--CCCCCCCCC
Q 003585 178 ILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCK-EDDAPD-PVINSCN-----GFYC--DAFSPNKPY 247 (809)
Q Consensus 178 I~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~~~-~~~~~~-~vi~t~n-----g~~~--~~~~~~~p~ 247 (809)
|+|||+||||.+.+.++.|.+.+..||++.+-.+ ..+-+|=+.- ..+..+ ..|.+.+ ...- -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999854445568888999999877321 2233331111 000000 0111111 0000 011111222
Q ss_pred C----Cccccccccccc-cccCCCCCCCC-HHHHHHHHHHHHHhCCceeeeeeeecCCCCC------CCCCCC---c---
Q 003585 248 K----PTLWTEAWSGWF-TEFGGAVHRRP-VQDLAFAVARFIQKGGSFFNYYMYHGGTNFG------RTAGGP---F--- 309 (809)
Q Consensus 248 ~----P~~~tE~w~Gwf-~~wG~~~~~r~-~ed~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~G~~---~--- 309 (809)
+ +....|.|-+|| +.|..++-... .+--++.+++.|....+ -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 566778888999 77777665555 44456677777777766 6999999999999 666653 2
Q ss_pred ----ccccCcCCCCCCCCCCCC
Q 003585 310 ----ITTSYDYDAPLDEYGLMR 327 (809)
Q Consensus 310 ----~~TSYDYdAPl~E~G~~~ 327 (809)
..|+|++++.+.+.|.++
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~ 333 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALR 333 (673)
T ss_pred cCCcchhhhhhccCCCCCcccc
Confidence 479999999999999964
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.74 E-value=1.8e-18 Score=193.27 Aligned_cols=141 Identities=22% Similarity=0.350 Sum_probs=109.7
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCC
Q 003585 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (809)
Q Consensus 50 iHy~R~~~~~W~~~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~G 128 (809)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. ..
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4556789999999999999999999996 67799999999999999 899999999999999999975 66
Q ss_pred CCCeEecc-cCCeEe----------------ecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcc
Q 003585 129 GFPVWLKY-VPGISF----------------RTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK 191 (809)
Q Consensus 129 G~P~WL~~-~p~i~~----------------Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~ 191 (809)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++ ..||+|||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCc-
Confidence 78999975 566532 1346889999999999998888744 4899999999998742
Q ss_pred cCC-cchHHHHHHHHHHHH
Q 003585 192 SLG-AAGHAYVNWAAKMAV 209 (809)
Q Consensus 192 ~~~-~~~~~y~~~l~~~~~ 209 (809)
.|. .+.++|.+||++.+.
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ 161 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYG 161 (374)
T ss_dssp --SHHHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHhC
Confidence 244 377889999999985
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.44 E-value=3.2e-12 Score=138.69 Aligned_cols=192 Identities=19% Similarity=0.259 Sum_probs=123.7
Q ss_pred EEEecCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHH
Q 003585 29 VTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (809)
Q Consensus 29 v~~d~~~f~idGk~~~l~sG~iHy~------R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~f 102 (809)
|.+.++.|+|||||++|.+...|.. ..+++.|..+|++||++|+|+|++ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 5678999999999999999999963 258999999999999999999999 344432 399
Q ss_pred HHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003585 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (809)
Q Consensus 103 l~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QI 182 (809)
+++|.++||+|+..+.=.-++.|..-|.. .....|+.+.+.+.+-+++++...+ |+..||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheeec
Confidence 99999999999987621112333322211 2445788888877777777666555 5679999999
Q ss_pred ccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEeeCCCC--CCccc-ccCCCCCcc-----CCCC----C--CCCCC
Q 003585 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDD--APDPV-INSCNGFYC-----DAFS----P--NKPYK 248 (809)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~--~~~~v-i~t~ng~~~-----~~~~----~--~~p~~ 248 (809)
-||- ....+++.|.+++++.+.+.|+....... ..+.. .+...+.|- +.+. . ..+++
T Consensus 129 gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNES---------DYREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccC---------ccccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 9998 23567889999999999999875544310 11111 111111111 0111 1 35889
Q ss_pred Ccccccccccccc
Q 003585 249 PTLWTEAWSGWFT 261 (809)
Q Consensus 249 P~~~tE~w~Gwf~ 261 (809)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765554
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.29 E-value=4e-10 Score=133.79 Aligned_cols=160 Identities=17% Similarity=0.119 Sum_probs=112.1
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHH
Q 003585 27 STVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (809)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy~------R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~ 100 (809)
.+|+++++.|+|||+|+++.+...|.. .++++.|..+|+.||++|+|+|++ . |-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----s-h~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----S-HYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----c-cCCCC-----------H
Confidence 568889999999999999999999853 257889999999999999999999 3 44432 3
Q ss_pred HHHHHHHHcCCEEEEccCcccccccCCCCCCeEec--------ccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccc
Q 003585 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK--------YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFAS 172 (809)
Q Consensus 101 ~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~--------~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~ 172 (809)
+|+++|.++||+|+.... . -|+..|+. ..+....-..+|.+.++.++ .+.++|++. .
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~mv~r~----~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQ---AIRELIARD----K 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHH---HHHHHHHhc----c
Confidence 899999999999998852 1 11111211 01111111233445444333 344555532 6
Q ss_pred cCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEeeC
Q 003585 173 QGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (809)
Q Consensus 173 ~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (809)
|+..||||-|-||-... ......+++.|.+.+++++.+.|+..+.
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 78899999999997531 1234578888999999999988876543
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.17 E-value=4.7e-10 Score=139.88 Aligned_cols=257 Identities=18% Similarity=0.218 Sum_probs=154.7
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHH
Q 003585 27 STVTYDRKAILINGQRRILISGSIHYP------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (809)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy~------R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~ 100 (809)
.+|.++++.|+|||||++|.+...|.. .++++.|+++|+.||++|+|+|++ .+..+.|
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------ 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 457888899999999999999998842 147899999999999999999999 3444445
Q ss_pred HHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEe
Q 003585 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (809)
Q Consensus 101 ~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~ 180 (809)
+|+++|.|+||+|+-.. |..|..|...+ +...-+++|.+.+ .+.+++.+++++. +|+..||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~---~~~~~~~~mV~Rd----rNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEK---VYVDRIVRHIHAQ----KNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHH---HHHHHHHHHHHhC----CCCCEEEEE
Confidence 99999999999999886 44333332111 0111235666654 3344455566633 688899999
Q ss_pred ccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEeeCCCCCCcccccCCCCCcc-----CCCCCCCCCCCcccccc
Q 003585 181 QIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-----DAFSPNKPYKPTLWTEA 255 (809)
Q Consensus 181 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~~~~~~~vi~t~ng~~~-----~~~~~~~p~~P~~~tE~ 255 (809)
-+.||-+. +. .++.+.+.+++++.+.|+. ..+.... .+.+...-.|. ..+....+++|++.+|+
T Consensus 445 slGNE~~~-----g~----~~~~~~~~~k~~DptR~v~-~~~~~~~-~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 445 SLGNESGY-----GC----NIRAMYHAAKALDDTRLVH-YEEDRDA-EVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred ECccCccc-----cH----HHHHHHHHHHHhCCCceEE-eCCCcCc-cccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 99999753 21 2467778888888888763 3322111 11111111121 22233446799999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHH-----------H-------HhCCceeeeeeeecCCCCCCCCCCCcccccCcCC
Q 003585 256 WSGWFTEFGGAVHRRPVQDLAFAVARF-----------I-------QKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYD 317 (809)
Q Consensus 256 w~Gwf~~wG~~~~~r~~ed~~~~~~~~-----------l-------~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYd 317 (809)
--+ .|... ...++.-..+.+. + ..+|. -|+.+|| .||-+. -..++--+
T Consensus 514 ~ha----mgn~~--g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~---~~~~ygG-d~g~~p----~~~~f~~~ 579 (1021)
T PRK10340 514 AHA----MGNGP--GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGN---VWYKYGG-DYGDYP----NNYNFCID 579 (1021)
T ss_pred Hhc----cCCCC--CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCC---EEEEECC-CCCCCC----CCcCcccc
Confidence 321 12100 0122222211110 0 00111 2445555 355331 11223334
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHH
Q 003585 318 APLDEYGLMRQPKYGHLKQLHEAIK 342 (809)
Q Consensus 318 APl~E~G~~~~pKy~~lr~l~~~i~ 342 (809)
.-++-++.+ .|.+...|.+.+-++
T Consensus 580 Glv~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 580 GLIYPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred eeECCCCCC-ChhHHHHHHhcceEE
Confidence 678888988 699999998865443
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.12 E-value=1.1e-09 Score=136.38 Aligned_cols=150 Identities=19% Similarity=0.240 Sum_probs=109.6
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecC--C----CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHH
Q 003585 27 STVTYDRKAILINGQRRILISGSIHY--P----RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLV 100 (809)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy--~----R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~ 100 (809)
.+|+++++.|+|||||++|.+...|. + +++++.++++|+.||++|+|+|++ .++.+.|
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------ 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------ 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 45778888999999999999999984 2 468999999999999999999999 4444455
Q ss_pred HHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEe
Q 003585 101 RFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (809)
Q Consensus 101 ~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~ 180 (809)
+|+++|.|+||+|+-... . | ..|-.|.. . -.+|+.|.+++ .+++.+++++. +|+..||||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~-----~~~dp~~~~~~---~~~~~~mV~Rd----rNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E-THGMVPMN---R-----LSDDPRWLPAM---SERVTRMVQRD----RNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c-ccCCcccc---C-----CCCCHHHHHHH---HHHHHHHHHhC----CCCCEEEEE
Confidence 999999999999998862 1 1 11111210 0 13567776544 45556666633 688899999
Q ss_pred ccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEeeC
Q 003585 181 QIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (809)
Q Consensus 181 QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (809)
-+.||-+. + ...+.+.+.+++++.+.|+....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECC
Confidence 99999753 2 12456677778888888875543
No 10
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.4e-08 Score=122.86 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=101.7
Q ss_pred cceeEEEecCcEEECCEEeEEEEEEecCCC-----C-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccch
Q 003585 25 QCSTVTYDRKAILINGQRRILISGSIHYPR-----S-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYD 98 (809)
Q Consensus 25 ~~~~v~~d~~~f~idGk~~~l~sG~iHy~R-----~-~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~d 98 (809)
.=.+|+++...|.|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+| . |=|..
T Consensus 282 GfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~---------- 346 (808)
T COG3250 282 GFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS---------- 346 (808)
T ss_pred ccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC----------
Confidence 336689999999999999999999999632 3 4555889999999999999999 3 55554
Q ss_pred HHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceE
Q 003585 99 LVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (809)
Q Consensus 99 l~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII 178 (809)
.+|++||.++||+||-.+ ..||..+ | +|+.|++.+..=++++++..| |+..||
T Consensus 347 -~~~ydLcDelGllV~~Ea----~~~~~~~--~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIi 399 (808)
T COG3250 347 -EEFYDLCDELGLLVIDEA----MIETHGM--P-------------DDPEWRKEVSEEVRRMVERDR-------NHPSII 399 (808)
T ss_pred -HHHHHHHHHhCcEEEEec----chhhcCC--C-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEE
Confidence 499999999999999986 3334221 1 778888777666666555544 667999
Q ss_pred EeccccccCCCcccCCcchHHHHHHHHHH
Q 003585 179 LSQIENEYGPESKSLGAAGHAYVNWAAKM 207 (809)
Q Consensus 179 ~~QIENEyg~~~~~~~~~~~~y~~~l~~~ 207 (809)
||-+.||-|. |.....-..|.++.
T Consensus 400 iWs~gNE~~~-----g~~~~~~~~~~k~~ 423 (808)
T COG3250 400 IWSLGNESGH-----GSNHWALYRWFKAS 423 (808)
T ss_pred EEeccccccC-----ccccHHHHHHHhhc
Confidence 9999999874 33333334455443
No 11
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.88 E-value=3.8e-09 Score=98.97 Aligned_cols=69 Identities=32% Similarity=0.689 Sum_probs=50.1
Q ss_pred cCCceEEEEEEeCCCCCCceE-Eee--CCCceEEEEECCeeeeeeeeccccCCCcccccCCCcCCccccCCCCCCceeee
Q 003585 619 QQSLKWYKAYFDAPTGNEPLA-LDL--RSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWY 695 (809)
Q Consensus 619 ~~~~~wYk~~F~~p~g~dp~~-Ldl--~g~gKG~vwVNG~niGRYWp~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlY 695 (809)
.....|||++|..-..+..+. |+. ....+++|||||++|||||+. +| ||++++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----------~g-------------~q~tf~ 88 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----------IG-------------PQTTFS 88 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT-----------TE-------------CCEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC-----------CC-------------ccEEEE
Confidence 346799999996422111233 333 457889999999999999965 46 999988
Q ss_pred ecCccccccCccEEEEE
Q 003585 696 HVPRSWLKPTKNLLVVF 712 (809)
Q Consensus 696 hVP~~~Lk~g~N~LVvf 712 (809)
||..+|+.++|.|+|+
T Consensus 89 -~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 89 -VPAGILKYGNNVLVVL 104 (111)
T ss_dssp -E-BTTBTTCEEEEEEE
T ss_pred -eCceeecCCCEEEEEE
Confidence 9999999876666554
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.78 E-value=6.3e-08 Score=102.63 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=109.4
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-CCCce-eeecccchHHHHHHHHHHcCCEEEE
Q 003585 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-PSPGH-YNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 38 idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hE-p~~G~-ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
.+|+++.+.+-+.|+... ..-++.+++||++|+|+||..+.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 379999999999994322 1667899999999999999999995544 67764 6666667999999999999999998
Q ss_pred ccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCccc--C
Q 003585 116 RIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKS--L 193 (809)
Q Consensus 116 R~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~--~ 193 (809)
-+ ++. |.|...... -...+...+...++.+.|++++|+ ..+|++++|=||....... .
T Consensus 81 d~----h~~------~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DL----HNA------PGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EE----EES------TTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTT
T ss_pred Ee----ccC------ccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCcccc
Confidence 75 221 566322111 012233344455566666666653 3479999999999763211 0
Q ss_pred C----cchHHHHHHHHHHHHcCCCCcceEeeC
Q 003585 194 G----AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (809)
Q Consensus 194 ~----~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (809)
. ..-..+++.+.+.+|+.+.+.+++.-.
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 0 112456666777778888887665533
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.66 E-value=1e-07 Score=89.32 Aligned_cols=84 Identities=27% Similarity=0.399 Sum_probs=58.9
Q ss_pred hhhcCCCCCCccEEEEEEEeecCCCcccccCCCCCe-eeec-CcceEEEEEECCEEEEEEEccccCceeEEeeccc-ccC
Q 003585 460 LEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPT-LTVE-SAGHAVHVFINGQFLGSAFGTRENRRFTFSGPAN-LRA 536 (809)
Q Consensus 460 ~Eql~~t~d~sgYlwY~T~i~~~~~~~~~~~g~~~~-L~v~-~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~-l~~ 536 (809)
.+..+..++.+|++|||++|.....+. ... |.+. +.+++++|||||+++|+..+.. ....+|+.|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 566677778999999999997543331 113 4444 7899999999999999988332 12245555543 566
Q ss_pred CCCeEEEEEecCCc
Q 003585 537 GINKIALLSIAVGL 550 (809)
Q Consensus 537 G~n~L~lLven~Gr 550 (809)
+.|.|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67788999999996
No 14
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.29 E-value=4.3e-06 Score=82.83 Aligned_cols=100 Identities=24% Similarity=0.309 Sum_probs=72.5
Q ss_pred CCCCccEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCC-CeEEEE
Q 003585 466 TRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALL 544 (809)
Q Consensus 466 t~d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~-n~L~lL 544 (809)
.....++.||+++|.++.+. .+....|.+.++.+.+.|||||+++|...+.. ..+.++++-.|+.|. |+|.|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVR 136 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEE
T ss_pred ccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEE
Confidence 34578999999999986532 24556899999999999999999999987653 345666666788897 999999
Q ss_pred EecCCcccccCCC-CccccceeccEEEc
Q 003585 545 SIAVGLPNVGLHY-ETWETGVRGAVVLH 571 (809)
Q Consensus 545 ven~Gr~NyG~~~-~~~~kGI~G~V~l~ 571 (809)
+.+.....+-+.+ .....||.++|.|.
T Consensus 137 v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 137 VDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp EESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred EeecCCCceeecCcCCccCccccEEEEE
Confidence 9865543331111 13569999999884
No 15
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.15 E-value=3.2e-05 Score=84.06 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred cccceeEEEecCcEE--ECCEEeEEEEEEecCC-----------CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc
Q 003585 23 LIQCSTVTYDRKAIL--INGQRRILISGSIHYP-----------RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG 89 (809)
Q Consensus 23 ~~~~~~v~~d~~~f~--idGk~~~l~sG~iHy~-----------R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G 89 (809)
...-..|+..++.|+ .+|++|.|.+-.+.+. -..++.|.+++..||++|+|||++|-. .|.
T Consensus 5 ~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v----dp~-- 78 (314)
T PF03198_consen 5 AAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV----DPS-- 78 (314)
T ss_dssp STTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT--
T ss_pred hccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe----CCC--
Confidence 334456888899998 7899999998877652 236889999999999999999999732 222
Q ss_pred eeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCCh--hhHHHHHHHHHHHHHHHHcc
Q 003585 90 HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNG--PFKVAMQGFTQKIVQMMKNE 167 (809)
Q Consensus 90 ~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~--~y~~~~~~~~~~i~~~i~~~ 167 (809)
.|=++++++.+++|+|||+-.+. |...+...+| .|-...-.-+.++++.++++
T Consensus 79 -------~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y 133 (314)
T PF03198_consen 79 -------KNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY 133 (314)
T ss_dssp -------S--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-
T ss_pred -------CCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC
Confidence 37789999999999999998652 2333334455 55444444455667777755
Q ss_pred ccccccCCceEEeccccccCCCccc--CCcchHHHHHHHHHHHHcCCC-Ccce
Q 003585 168 KLFASQGGPIILSQIENEYGPESKS--LGAAGHAYVNWAAKMAVGLDT-GVPW 217 (809)
Q Consensus 168 ~l~~~~gGpII~~QIENEyg~~~~~--~~~~~~~y~~~l~~~~~~~g~-~vP~ 217 (809)
+ ++++.=+.||--+-... -.+.-|+.++.+|+..++.+. .+|+
T Consensus 134 ~-------N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 D-------NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp T-------TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred C-------ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4 89999999998642110 112345566666666666665 4564
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.01 E-value=1.4e-05 Score=85.35 Aligned_cols=116 Identities=21% Similarity=0.355 Sum_probs=87.9
Q ss_pred CCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHH
Q 003585 81 WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKI 160 (809)
Q Consensus 81 Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i 160 (809)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|++.+
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 333322 533 6899987533 345677888888888
Q ss_pred HHHHHccccccccCCceEEeccccccCCCcc------cC-CcchHHHHHHHHHHHHcCCCCcceEeeC
Q 003585 161 VQMMKNEKLFASQGGPIILSQIENEYGPESK------SL-GAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (809)
Q Consensus 161 ~~~i~~~~l~~~~gGpII~~QIENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (809)
+.+++ |.|..|+|=||--+... .+ ...+..|+...-+.+++.+.++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 87776 46889999999533110 11 1234679999999999998888888865
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.74 E-value=6.2e-05 Score=86.36 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.|.++||.+|+-.= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 568999999999999999999999999999 7999999999999999999999999886641 2358999986
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHHc
Q 003585 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (809)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (809)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5553 3466677777777777777763
No 18
>PLN02705 beta-amylase
Probab=97.71 E-value=0.0001 Score=85.27 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=81.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEEE--EccCcccccccCCC----
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCAEWNFG---- 128 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~Vi--lR~GPyicaEw~~G---- 128 (809)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++. |.. --|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 5677888999999999999999999999998 699999996 6677999999999964 543 22443 222
Q ss_pred -CCCeEecc----cCCeEee------------------------cCChhhHHHHHHHHHHHHHHHHccccccccCCceEE
Q 003585 129 -GFPVWLKY----VPGISFR------------------------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (809)
Q Consensus 129 -G~P~WL~~----~p~i~~R------------------------t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~ 179 (809)
-||.|+.+ +|+|.+. |--+.|.+.|+.|-..+.+.|. +|-|.-
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~e 411 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFV--------EGLITA 411 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhcc--------CCceeE
Confidence 38999986 5776431 1113466666655555544442 468888
Q ss_pred ecc
Q 003585 180 SQI 182 (809)
Q Consensus 180 ~QI 182 (809)
+||
T Consensus 412 I~V 414 (681)
T PLN02705 412 VEI 414 (681)
T ss_pred EEe
Confidence 887
No 19
>PLN02905 beta-amylase
Probab=97.66 E-value=0.00015 Score=84.17 Aligned_cols=113 Identities=23% Similarity=0.440 Sum_probs=82.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEEE--EccCcccccccCCC----
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCAEWNFG---- 128 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~Vi--lR~GPyicaEw~~G---- 128 (809)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++. +.. --|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 799999996 6678999999999964 543 22333 222
Q ss_pred -CCCeEecc----cCCeEee------------------------cCChhhHHHHHHHHHHHHHHHHccccccccCCceEE
Q 003585 129 -GFPVWLKY----VPGISFR------------------------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (809)
Q Consensus 129 -G~P~WL~~----~p~i~~R------------------------t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~ 179 (809)
-||.|+.+ +|+|.+. |--+.|.+.|+.|-..+.+.|. +|-|.-
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~e 429 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISM 429 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEE
Confidence 38999986 5776431 1124566666666666555443 367888
Q ss_pred ecc
Q 003585 180 SQI 182 (809)
Q Consensus 180 ~QI 182 (809)
+||
T Consensus 430 I~V 432 (702)
T PLN02905 430 VEV 432 (702)
T ss_pred EEe
Confidence 887
No 20
>PLN02801 beta-amylase
Probab=97.65 E-value=0.00016 Score=82.64 Aligned_cols=80 Identities=26% Similarity=0.534 Sum_probs=63.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEEE--EccCcccccccCCC----
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCAEWNFG---- 128 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~Vi--lR~GPyicaEw~~G---- 128 (809)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..+++++|+++||++. +.. --|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5677889999999999999999999999998 599999996 6678999999999964 543 22332 112
Q ss_pred -CCCeEecc----cCCeE
Q 003585 129 -GFPVWLKY----VPGIS 141 (809)
Q Consensus 129 -G~P~WL~~----~p~i~ 141 (809)
-||.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 38999985 57764
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.63 E-value=0.00046 Score=79.61 Aligned_cols=142 Identities=22% Similarity=0.406 Sum_probs=94.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEEE--EccCcccccccCCC----
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCAEWNFG---- 128 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~Vi--lR~GPyicaEw~~G---- 128 (809)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++. +.. --|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 5677889999999999999999999999998 799999996 6677999999999964 543 22333 222
Q ss_pred -CCCeEecc----cCCeEeec--------------CC----------hhhHHHHHHHHHHHHHHHHccccccccCCceEE
Q 003585 129 -GFPVWLKY----VPGISFRT--------------DN----------GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIIL 179 (809)
Q Consensus 129 -G~P~WL~~----~p~i~~Rt--------------~~----------~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~ 179 (809)
-||.|+.+ +|+|.+.. |+ +.|.+.|+.|=..+.+.+. +.|.-
T Consensus 199 IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~---------~~I~e 269 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG---------DTIVE 269 (573)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc---------CceeE
Confidence 38999986 57764311 11 2455555555544444332 46888
Q ss_pred ecc------ccccCCCcc-----cCC---c--chHHHH-HHHHHHHHcCC
Q 003585 180 SQI------ENEYGPESK-----SLG---A--AGHAYV-NWAAKMAVGLD 212 (809)
Q Consensus 180 ~QI------ENEyg~~~~-----~~~---~--~~~~y~-~~l~~~~~~~g 212 (809)
+|| |=-|-+|.. .|. + |=.+|| ..|++.+.+.|
T Consensus 270 I~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G 319 (573)
T PLN00197 270 IQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAG 319 (573)
T ss_pred EEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhC
Confidence 888 444555521 111 1 333455 56777776654
No 22
>PLN02161 beta-amylase
Probab=97.57 E-value=0.00027 Score=80.84 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=63.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCC-----C
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG-----G 129 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~G-----G 129 (809)
.++.-...|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++..-.-=--|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 5666788999999999999999999999998 799999996 66789999999999643322122332 112 2
Q ss_pred CCeEecc----cCCeEe
Q 003585 130 FPVWLKY----VPGISF 142 (809)
Q Consensus 130 ~P~WL~~----~p~i~~ 142 (809)
||.|+.+ +|+|.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 8999985 577754
No 23
>PLN02803 beta-amylase
Probab=97.52 E-value=0.00032 Score=80.65 Aligned_cols=81 Identities=23% Similarity=0.543 Sum_probs=63.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-CCceeeecccchHHHHHHHHHHcCCEEE--EccCcccccccCCC----
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-SPGHYNFEGSYDLVRFIKTVQRVGLYAH--LRIGPYVCAEWNFG---- 128 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-~~G~ydF~G~~dl~~fl~la~~~GL~Vi--lR~GPyicaEw~~G---- 128 (809)
.++.-+..|+++|++|++.|.+=|.|.+.|. .|++|||+| ..+++++|+++||++. +.. --|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4566788999999999999999999999998 599999996 6678999999999964 443 22332 112
Q ss_pred -CCCeEecc----cCCeEe
Q 003585 129 -GFPVWLKY----VPGISF 142 (809)
Q Consensus 129 -G~P~WL~~----~p~i~~ 142 (809)
-||.|+.+ +|+|.+
T Consensus 179 IpLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred ccCCHHHHHhhhcCCCceE
Confidence 28999985 577643
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.52 E-value=0.00052 Score=74.86 Aligned_cols=225 Identities=23% Similarity=0.345 Sum_probs=113.9
Q ss_pred cCcEE-ECCEEeEEEEEEecC---CCCCHhHHHHHHHHHHHCCCCEEEEccc--CCCC-C-------C----CCceeeec
Q 003585 33 RKAIL-INGQRRILISGSIHY---PRSTPEMWEDLIRKAKDGGLDVIDTYVF--WNGH-E-------P----SPGHYNFE 94 (809)
Q Consensus 33 ~~~f~-idGk~~~l~sG~iHy---~R~~~~~W~~~l~k~Ka~GlNtI~tyvf--Wn~h-E-------p----~~G~ydF~ 94 (809)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++=|+ |.-+ . | .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45676 7999999998 4444 4678899999999999999999999777 4422 1 1 12237776
Q ss_pred cc-----chHHHHHHHHHHcCCEEEEcc---CcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHc
Q 003585 95 GS-----YDLVRFIKTVQRVGLYAHLRI---GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (809)
Q Consensus 95 G~-----~dl~~fl~la~~~GL~VilR~---GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (809)
.- ..|++.|+.+.+.||.+.|-| +||+-+-|-+| | ..| =.+.+++|.+.|++++++
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 54 479999999999999975432 34444445443 1 111 136789999999999996
Q ss_pred cccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCCcce-EeeCCC-CCCc-----cccc--CC-CCC
Q 003585 167 EKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPW-VMCKED-DAPD-----PVIN--SC-NGF 236 (809)
Q Consensus 167 ~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~-~~~~~~-~~~~-----~vi~--t~-ng~ 236 (809)
.+ +|| |=|-||+ . ......++.+.+.+.+++.+..-+. ++..+. ..++ +-++ .. .|.
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 63 466 7799999 1 2335677777787777776543332 232221 1110 1011 11 121
Q ss_pred cc---C-------CCC-CCCCCCCcccccc-ccccccccCCCCCCCCHHHHHHHHHHHHHhCC
Q 003585 237 YC---D-------AFS-PNKPYKPTLWTEA-WSGWFTEFGGAVHRRPVQDLAFAVARFIQKGG 287 (809)
Q Consensus 237 ~~---~-------~~~-~~~p~~P~~~tE~-w~Gwf~~wG~~~~~r~~ed~~~~~~~~l~~g~ 287 (809)
.. + .+. ...|.||.+..|- |.|--..+.......+++|+-...=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 0 111 5578999999994 55544333333345678887766545555666
No 25
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=97.47 E-value=0.00011 Score=64.66 Aligned_cols=44 Identities=34% Similarity=0.744 Sum_probs=35.2
Q ss_pred eecCCCCeeeEEEeeeeCCCcc-cCcCccccc---ccCCchHHHHhhhC
Q 003585 764 LQCAPGQSITSIEFASFGTPSG-TCGSFQKGT---CHAPNSHAMLEKAL 808 (809)
Q Consensus 764 L~C~~g~~Is~i~fASfG~p~G-~Cg~f~~g~---c~a~~s~~~v~k~~ 808 (809)
|+|++| .+.+|++|+||.+.+ .|++...+. |++++++++|+++|
T Consensus 1 L~C~~g-~~I~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C 48 (80)
T PF02140_consen 1 LSCPPG-KVISIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERC 48 (80)
T ss_dssp EE-STT-EEEEEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHH
T ss_pred CCCcCC-CEEEEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhC
Confidence 799999 788999999999998 998666664 99999999999998
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.19 E-value=0.00041 Score=77.97 Aligned_cols=114 Identities=19% Similarity=0.314 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccc----cCCCCCCeE
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE----WNFGGFPVW 133 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaE----w~~GG~P~W 133 (809)
.-+..|+++|++|++.|.+.|.|.+.|.. |++|||+| ..+++++|++.||++.+-.-=--|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 55778999999999999999999999997 99999995 67889999999999754221122221 111137999
Q ss_pred ecc---cCCeEeec--------------CChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003585 134 LKY---VPGISFRT--------------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (809)
Q Consensus 134 L~~---~p~i~~Rt--------------~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QI 182 (809)
+.+ ..+|.+.. .... ++.-+.|++.....++ .++ +-|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 22553211 1122 4555566666666666 332 57888876
No 27
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.92 E-value=0.0012 Score=72.94 Aligned_cols=156 Identities=17% Similarity=0.304 Sum_probs=109.4
Q ss_pred EEEEEecCCCCCHh-HHHHHHHHHHHCCCCEEEEc--ccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003585 45 LISGSIHYPRSTPE-MWEDLIRKAKDGGLDVIDTY--VFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (809)
Q Consensus 45 l~sG~iHy~R~~~~-~W~~~l~k~Ka~GlNtI~ty--vfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyi 121 (809)
.++.+++..++..+ ..++.+. .-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -+
T Consensus 11 ~~G~av~~~~~~~~~~~~~~~~----~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRELFA----KHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV 81 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHHHHH----HH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE
T ss_pred CEEEEechhHcCCcHHHHHHHH----HhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE
Confidence 68999998887665 4444443 458888874 5599999999999999 89999999999999985331 11
Q ss_pred ccccCCCCCCeEecccCCeEeecC-ChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcc---------
Q 003585 122 CAEWNFGGFPVWLKYVPGISFRTD-NGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK--------- 191 (809)
Q Consensus 122 caEw~~GG~P~WL~~~p~i~~Rt~-~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~--------- 191 (809)
|.. ..|.|+...+.. ... .+...+.++++++.++.++++. |.|..|-|=||-=.-..
T Consensus 82 ---W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 82 ---WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp ---ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred ---Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCCh
Confidence 534 789999875110 000 1247888999999988887722 89999999999632110
Q ss_pred cCCcchHHHHHHHHHHHHcCCCCcceEeeCC
Q 003585 192 SLGAAGHAYVNWAAKMAVGLDTGVPWVMCKE 222 (809)
Q Consensus 192 ~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~~ 222 (809)
.+...|..|+..+-++|++...++.++.++-
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 1222356799999999999888888888775
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.91 E-value=0.00089 Score=77.52 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~ 135 (809)
..|+++|+.||++|+|+.++-+-|...+|. +|++|-+|....+++|+.+.++||..|+-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 569999999999999999999999999999 699999999999999999999999977653 3667999998
Q ss_pred ccCCeEeecCChhhHHHHHHHHHHHHHHHHc
Q 003585 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (809)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (809)
+.-+- .|+...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 75443 3566777777788888877774
No 29
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.0033 Score=68.61 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=100.5
Q ss_pred HHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCC
Q 003585 67 AKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDN 146 (809)
Q Consensus 67 ~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~ 146 (809)
+|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+.-- +.| |.. -.|.||..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 5666655556666699999999999999 6788999999999965322 222 433 6889987643 245
Q ss_pred hhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCC----Cc---ccCCcchHHHHHHHHHHHHcCCCCcceEe
Q 003585 147 GPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP----ES---KSLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (809)
Q Consensus 147 ~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~g~~vP~~~ 219 (809)
++.++.|++++..++.+.+ |.|+.|-|=||-=. +. +.++..+.+|+++.-+.|++.+.+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7899999999999999988 35999999999732 11 11224678999999999999888877777
Q ss_pred eCC
Q 003585 220 CKE 222 (809)
Q Consensus 220 ~~~ 222 (809)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 30
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.79 E-value=0.0065 Score=72.80 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=70.0
Q ss_pred CCccEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCC-CeEEEEEe
Q 003585 468 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLSI 546 (809)
Q Consensus 468 d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~-n~L~lLve 546 (809)
+..|..||+++|.++.. +.+....|++.++...+.|||||++||...+.. ..+.|+++-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~----~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKG----WAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCcc----cCCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 36788999999998643 124557899999999999999999999976543 345565554577785 49999997
Q ss_pred cCCcc---cccCCC-------------C-ccccceeccEEEccc
Q 003585 547 AVGLP---NVGLHY-------------E-TWETGVRGAVVLHGL 573 (809)
Q Consensus 547 n~Gr~---NyG~~~-------------~-~~~kGI~G~V~l~g~ 573 (809)
|.-.. ..|... + ....||.++|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 64211 011110 0 236899999999544
No 31
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.67 E-value=0.0031 Score=62.37 Aligned_cols=67 Identities=24% Similarity=0.462 Sum_probs=50.4
Q ss_pred cCCceEEEEEEeCCCCC--CceEEeeCCC-ceEEEEECCeeeeeeeeccccCCCcccccCCCcCCccccCCCCCCceeee
Q 003585 619 QQSLKWYKAYFDAPTGN--EPLALDLRSM-GKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWY 695 (809)
Q Consensus 619 ~~~~~wYk~~F~~p~g~--dp~~Ldl~g~-gKG~vwVNG~niGRYWp~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlY 695 (809)
.....||+++|++|+.. ..++|.+.|. ....|||||+-||+-.-.+ ..- -+
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~-------------------------~~~-~~ 119 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY-------------------------TPF-EF 119 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT-------------------------S-E-EE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc-------------------------CCe-EE
Confidence 34679999999999753 4689999987 5899999999999975211 122 25
Q ss_pred ecCccccccCc-cEEEEE
Q 003585 696 HVPRSWLKPTK-NLLVVF 712 (809)
Q Consensus 696 hVP~~~Lk~g~-N~LVvf 712 (809)
.|+. .|++|+ |+|.|.
T Consensus 120 dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 120 DITD-YLKPGEENTLAVR 136 (167)
T ss_dssp ECGG-GSSSEEEEEEEEE
T ss_pred eChh-hccCCCCEEEEEE
Confidence 5764 789888 998873
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.67 E-value=0.0071 Score=67.28 Aligned_cols=138 Identities=22% Similarity=0.336 Sum_probs=80.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCC
Q 003585 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG 139 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvfWn~hEp~~-G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~ 139 (809)
+|.++-+|+.|+|.||.=| |+ .|.. |..|.+ +..+..+-|+++||.|+|-.- |- .=|. +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~Wa----------DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWA----------DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS------------BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCC----------CCC
Confidence 4789999999999999977 54 4554 666666 667777778899999999863 11 1222 233
Q ss_pred eEee------cCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCC-cccCC--cch---HHHHHHHHHH
Q 003585 140 ISFR------TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPE-SKSLG--AAG---HAYVNWAAKM 207 (809)
Q Consensus 140 i~~R------t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~-~~~~~--~~~---~~y~~~l~~~ 207 (809)
-+.. -+-..-.++|..|++.++..|++ +|=.+=||||.||..+- -+..+ ..- .++++.-.+.
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~A 162 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKA 162 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHH
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHH
Confidence 2111 12356778999999999999994 45578899999997431 11112 112 2344444566
Q ss_pred HHcCCCCcc-eEeeCC
Q 003585 208 AVGLDTGVP-WVMCKE 222 (809)
Q Consensus 208 ~~~~g~~vP-~~~~~~ 222 (809)
+|+.+.++. .+++++
T Consensus 163 Vr~~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 163 VREVDPNIKVMLHLAN 178 (332)
T ss_dssp HHTHSSTSEEEEEES-
T ss_pred HHhcCCCCcEEEEECC
Confidence 666554443 345454
No 33
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.56 E-value=0.0079 Score=76.19 Aligned_cols=94 Identities=21% Similarity=0.323 Sum_probs=68.9
Q ss_pred cEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecCCc
Q 003585 471 DYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGL 550 (809)
Q Consensus 471 gYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~Gr 550 (809)
+-.||+++|.++..- .|....|++.++...++|||||++||...+.. ..+.|+++--|+.|.|+|.|.|.+..
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~- 181 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA- 181 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC-
Confidence 567999999986532 24557899999999999999999999876543 23556655457889999999997432
Q ss_pred ccccCCCCc----cccceeccEEEccc
Q 003585 551 PNVGLHYET----WETGVRGAVVLHGL 573 (809)
Q Consensus 551 ~NyG~~~~~----~~kGI~G~V~l~g~ 573 (809)
.|.+++. ...||.++|.|.-.
T Consensus 182 --d~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 --DSTYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred --CCCccccCCccccccccceEEEEEe
Confidence 2333332 35899999998544
No 34
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.38 E-value=0.0071 Score=70.54 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
.|+++|+.||++|+|+.++-+-|....|. +|++|=+|-...+++|+.+.++||..++-. -+=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 47899999999999999999999999997 567888899999999999999999977663 24468999976
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 137 ~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
. -|- .|+...++..+|.+.+++.++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 443 355666666677777766666
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.29 E-value=0.061 Score=54.23 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=81.3
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-----CC---CceeeecccchHHHHHHHHHHcCCEEEEccCcccccc
Q 003585 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-----PS---PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (809)
Q Consensus 53 ~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hE-----p~---~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaE 124 (809)
-.++++.|+.+++.||++|+|+|=.- |...+ |. ++.|.-....-|..+|++|++.||.|++-.+ -.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 47899999999999999999998421 22111 11 2233334456899999999999999998753 11
Q ss_pred cCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHH
Q 003585 125 WNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWA 204 (809)
Q Consensus 125 w~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l 204 (809)
|.|-.. .|... ...+-+.|++.+. . .+.+....=+|=|=.|..... ....+..+.|
T Consensus 89 ------~~~w~~--------~~~~~---~~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDW---EAERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHH---HHHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 223221 22222 1112222444444 2 234455777888889987642 2345566666
Q ss_pred HHHHHcCCCCcce
Q 003585 205 AKMAVGLDTGVPW 217 (809)
Q Consensus 205 ~~~~~~~g~~vP~ 217 (809)
.+.+++.--+.|+
T Consensus 145 ~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 145 GKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHhCCCCCe
Confidence 6666554335554
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.27 E-value=0.0088 Score=69.71 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~ 135 (809)
..|+++|+.||++|+|+.++-+-|...+|. ++++|=+|-...+++|+.+.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447899999999999999999999999997 556788888899999999999999987653 2446899997
Q ss_pred cc-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
.. -|- .|+...++..+|.+.+++.++
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 343 345555555556555555555
No 37
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.20 E-value=0.018 Score=73.04 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=67.3
Q ss_pred ccEEEEEEEeecCCCcccccCCC-CCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEEEEecC
Q 003585 470 SDYLWYMTSVEISSSESFLRGGQ-KPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAV 548 (809)
Q Consensus 470 sgYlwY~T~i~~~~~~~~~~~g~-~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~lLven~ 548 (809)
.+-.||+++|.++.+- .+. +..|++.++...+.|||||+++|...+.. ..+.|++.-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 3678999999986431 122 46899999999999999999999876543 3456665555788999999988422
Q ss_pred CcccccCCCCc----cccceeccEEEccc
Q 003585 549 GLPNVGLHYET----WETGVRGAVVLHGL 573 (809)
Q Consensus 549 Gr~NyG~~~~~----~~kGI~G~V~l~g~ 573 (809)
.-|.+++. ...||..+|.|.-.
T Consensus 193 ---sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 ---SDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred ---CCCCccccCCceeeccccceEEEEEc
Confidence 12333332 34799999998543
No 38
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.017 Score=66.03 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=71.4
Q ss_pred CHhHH-----HHHHHHHHHCCCCEEEEcccCCCCCCCC--ceeee--cccchHHHHHHHHHHcCCEEEEcc----Ccccc
Q 003585 56 TPEMW-----EDLIRKAKDGGLDVIDTYVFWNGHEPSP--GHYNF--EGSYDLVRFIKTVQRVGLYAHLRI----GPYVC 122 (809)
Q Consensus 56 ~~~~W-----~~~l~k~Ka~GlNtI~tyvfWn~hEp~~--G~ydF--~G~~dl~~fl~la~~~GL~VilR~----GPyic 122 (809)
...-| ++.+..||.+|||+||.++.|..+++.. ..|-. +--.-|++.|+.|++.||+|++-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45567 8899999999999999999944435543 22222 111278899999999999999873 21111
Q ss_pred cccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCC
Q 003585 123 AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGP 188 (809)
Q Consensus 123 aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~ 188 (809)
-| ..|.... . +......++..+-.+.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 1222110 0 0023333444444555555555 3558999999999863
No 39
>PLN02998 beta-glucosidase
Probab=96.12 E-value=0.0048 Score=72.21 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
..|+++|+.||++|+|+-++-+-|+-.+|. .|.+|=+|....+++|+.+.++||..++-. -.=-+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 678898999999999999999999866543 12348999986
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 137 ~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
. -|-.=|..=..|.++++.-++++.++++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 5532222223455555555555544444
No 40
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.09 E-value=0.014 Score=68.07 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
..|+++|+.||++|+|+-++-+.|+-.+|. +|.+|=+|...-+++|+.+.++||.-++-. -+=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 347899999999999999999999999997 578898999999999999999999866553 13358999987
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
.-|- .|+...++..+|.+.+++.+.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 344444444445444444443
No 41
>PLN02814 beta-glucosidase
Probab=96.01 E-value=0.0057 Score=71.74 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
..|+++|+.||++|+|+-++-+-|.-.+|. +|.+|-+|....+++|+.+.++||..++-.= =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHH
Confidence 458999999999999999999999999996 6889999999999999999999998665430 24 37999986
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 137 ~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
. -|- .|+...++..+|.+.+++.+.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 443 233444444444444444444
No 42
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.01 E-value=0.017 Score=67.23 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
..|+++|+.||++|+|+-++-+-|...+|. +|++|=+|....+++|+.+.++||..++-. -+=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 458899999999999999999999999996 678888899999999999999999977653 13348999987
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
.-|- .|+...++..+|.+.+++.++
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 345555556666666666555
No 43
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.86 E-value=0.0098 Score=69.41 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~ 135 (809)
..|+++|+.||++|+|+-++-+-|+-.+|. +|++|=+|-...+++|+.+.++||..++-. -+=-+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888898999999999999999866543 1334899997
Q ss_pred cc-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+. -|-.=|..=..|.++++.-++++.+.++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4431122123444444444444444444
No 44
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.77 E-value=0.01 Score=69.28 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~ 135 (809)
..|+++|+.||++|+|+-++-+-|.-.+|. +|.+|=+|-...+++|+.+.++||.-++-. -+=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 566888888999999999999999866553 1334899997
Q ss_pred cc-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+. -|-.-|..=..|.++++.-++++.+++|
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 4532222223455555555555555554
No 45
>PLN02849 beta-glucosidase
Probab=95.72 E-value=0.0094 Score=69.92 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCC-CceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
..|+++|+.||++|+|+-++-+-|.-.+|. .|++|=+|....+++|+.+.++||.-++-. -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 478888899999999999999999866543 13348999986
Q ss_pred c-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 137 V-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 137 ~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
. -|-.=|..=..|.++++.-++++.+++|
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4432222223444555555555444444
No 46
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.066 Score=57.98 Aligned_cols=109 Identities=23% Similarity=0.308 Sum_probs=77.8
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHH---HcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 60 W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~---~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
=.|.|+-+|+.|+|-|+.-| ||.---..|+=-=.|+.|+.+.|++++ ..||+|++-.= +-.|-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa- 131 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA- 131 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc-
Confidence 35899999999999999854 777655556555567899999999876 47999999851 111111
Q ss_pred cCCeE------eecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccC
Q 003585 137 VPGIS------FRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (809)
Q Consensus 137 ~p~i~------~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg 187 (809)
+|+-+ ..-+-+.-++++-.|++..+..|+++ |=-+=||||.||-.
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 22211 11233566788899999999999955 44667999999984
No 47
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=94.50 E-value=0.3 Score=57.47 Aligned_cols=332 Identities=20% Similarity=0.280 Sum_probs=158.3
Q ss_pred EEeEEEEEEecC------CCCCHhHHHHHHHHH---HHCCCCEEEEccc--------CCCCCCCCc-----eeeecc--c
Q 003585 41 QRRILISGSIHY------PRSTPEMWEDLIRKA---KDGGLDVIDTYVF--------WNGHEPSPG-----HYNFEG--S 96 (809)
Q Consensus 41 k~~~l~sG~iHy------~R~~~~~W~~~l~k~---Ka~GlNtI~tyvf--------Wn~hEp~~G-----~ydF~G--~ 96 (809)
|++.=++|++=- .+.+++.=+..|+.+ +-+|++.+|+.+- +.+-+ .|+ .|+... .
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 444446777632 344555444444444 5589999998764 23322 223 233321 1
Q ss_pred chHHHHHHHHHHc--CCEEEEccCcccccccCCCCCCeEecccCCe----Eeec-CChhhHHHHHHHHHHHHHHHHcccc
Q 003585 97 YDLVRFIKTVQRV--GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI----SFRT-DNGPFKVAMQGFTQKIVQMMKNEKL 169 (809)
Q Consensus 97 ~dl~~fl~la~~~--GL~VilR~GPyicaEw~~GG~P~WL~~~p~i----~~Rt-~~~~y~~~~~~~~~~i~~~i~~~~l 169 (809)
..+..+|+.|++. +|+++.-| |. .|+|+.....+ .++. .++.|.+...+|+.+-++.+++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 2235688877764 57887776 76 79999864332 2342 2456777788888888887874
Q ss_pred ccccCCceEEeccccccCCCc---ccCC------cchHHHHH-HHHHHHHcCCC--CcceEeeCC--CCCCc---ccccC
Q 003585 170 FASQGGPIILSQIENEYGPES---KSLG------AAGHAYVN-WAAKMAVGLDT--GVPWVMCKE--DDAPD---PVINS 232 (809)
Q Consensus 170 ~~~~gGpII~~QIENEyg~~~---~~~~------~~~~~y~~-~l~~~~~~~g~--~vP~~~~~~--~~~~~---~vi~t 232 (809)
+|=||=++-+.||..... ..|. +..+.+++ .|.-.+++.++ ++-+++.+. .+.|+ .++.-
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 455999999999986310 1111 12355664 47778888876 676666653 22332 22211
Q ss_pred ------CC--CCcc--C-C-------CCCCCCCCCccccccccccccccCCCCC---CCCHHHHHHHHHHHHHhCCceee
Q 003585 233 ------CN--GFYC--D-A-------FSPNKPYKPTLWTEAWSGWFTEFGGAVH---RRPVQDLAFAVARFIQKGGSFFN 291 (809)
Q Consensus 233 ------~n--g~~~--~-~-------~~~~~p~~P~~~tE~w~Gwf~~wG~~~~---~r~~ed~~~~~~~~l~~g~s~~n 291 (809)
.. +++| + . .....|++.++.||-..|.- .|+.... ...++..+..+..-|..+.+
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--- 372 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--- 372 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE---
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce---
Confidence 11 2333 1 1 11347899999999876531 1221111 11234444444444555533
Q ss_pred eeee-------ecCCCCCCC-CCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhhccccCCCCcccCCCCccc
Q 003585 292 YYMY-------HGGTNFGRT-AGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQ 363 (809)
Q Consensus 292 ~YM~-------hGGTNfG~~-~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~~~p~~~~~g~~~~ 363 (809)
-||. .||-|++.. ..++.++.. +. +| -.++|.|++|..+.+||+.-...+... ........+
T Consensus 373 gw~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st---~~~~~~~l~ 442 (496)
T PF02055_consen 373 GWIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGST---SSSSDSGLE 442 (496)
T ss_dssp EEEEEESEBETTS---TT---B--SEEEEG-GG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEE---ESSSTTTEE
T ss_pred eeeeeeeecCCCCCCcccCCCCCceeEEEc-CC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEee---ccCCCCcee
Confidence 2333 388887532 122322111 11 12 234799999999988876433322110 000111345
Q ss_pred eeeeecCCcceeeeeeccCCCcc-eEEEeCC-------eeeecCCCce
Q 003585 364 AHVFSAGQQKCAAFLSNYNTKSA-ARVTFNG-------RQYNLPPWSI 403 (809)
Q Consensus 364 ~~vy~~~~~~~~~Fl~n~~~~~~-~~v~~~~-------~~~~lp~~sv 403 (809)
...|.+.++.-++-+.|...... .+|++++ ..+.|||.|+
T Consensus 443 ~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~ 490 (496)
T PF02055_consen 443 AVAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSI 490 (496)
T ss_dssp EEEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTE
T ss_pred EEEEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCce
Confidence 55666666666666666544332 2465543 2467777654
No 48
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.42 Score=55.78 Aligned_cols=149 Identities=16% Similarity=0.264 Sum_probs=100.2
Q ss_pred CcEEECCEEeEEEEEEecC-----CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHH
Q 003585 34 KAILINGQRRILISGSIHY-----PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQR 108 (809)
Q Consensus 34 ~~f~idGk~~~l~sG~iHy-----~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~ 108 (809)
-.|.|||.|.++.++.--+ .|.+-+.-+-.|+-++++|+|++++ |.. |.+.-+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----------GvYEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----------GVYESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----------ccccchhHHHHhhh
Confidence 4689999999999987654 3445666677899999999999998 543 33445699999999
Q ss_pred cCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccccc--
Q 003585 109 VGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY-- 186 (809)
Q Consensus 109 ~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEy-- 186 (809)
.||.|--.. =|.||-. ..|..|+..++.=++.=+.+|+ ++..||.+-=.||=
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccHH
Confidence 999885332 2456544 2477888888877666555555 45688888755552
Q ss_pred CCCcccCCc-------chH----HHHHHHHHHHHcCCCCcceEeeCC
Q 003585 187 GPESKSLGA-------AGH----AYVNWAAKMAVGLDTGVPWVMCKE 222 (809)
Q Consensus 187 g~~~~~~~~-------~~~----~y~~~l~~~~~~~g~~vP~~~~~~ 222 (809)
.-.+..|+. .-+ -|.+-+++++..-.-..|.+|...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 111111221 122 245557777776677889888664
No 49
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=94.17 E-value=8.6 Score=44.00 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=126.2
Q ss_pred cCCCCCHhHHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCceeeecccch-HHHHHHHHHHcCCEEEEccCcccc
Q 003585 51 HYPRSTPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFEGSYD-LVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 51 Hy~R~~~~~W~~~l~k~Ka~GlNtI~t-------yvfWn~hEp~~G~ydF~G~~d-l~~fl~la~~~GL~VilR~GPyic 122 (809)
.+.+..++.|.+ .+|++|+.-|-. +-.|+-....--.-+-.-.+| |.+|.+.|+++||.+-+=-.+
T Consensus 77 ~p~~fD~~~Wa~---~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~--- 150 (384)
T smart00812 77 TAEKFDPEEWAD---LFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL--- 150 (384)
T ss_pred CchhCCHHHHHH---HHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---
Confidence 334567787754 677888876542 223444322111111111344 567889999999987663322
Q ss_pred cccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHH
Q 003585 123 AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVN 202 (809)
Q Consensus 123 aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~ 202 (809)
-+|.+ |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--++
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~ 213 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSK 213 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHH
Confidence 37764 4443211111223456788999988888888888743 3444442 1111110 0111134
Q ss_pred HHHHHHHcCCCCc-ceEeeCCCCCCcccccCCCCC-cc-CCCCCCC-CCCCcc-ccccccccccccCC-CCCCCCHHHHH
Q 003585 203 WAAKMAVGLDTGV-PWVMCKEDDAPDPVINSCNGF-YC-DAFSPNK-PYKPTL-WTEAWSGWFTEFGG-AVHRRPVQDLA 276 (809)
Q Consensus 203 ~l~~~~~~~g~~v-P~~~~~~~~~~~~vi~t~ng~-~~-~~~~~~~-p~~P~~-~tE~w~Gwf~~wG~-~~~~r~~ed~~ 276 (809)
.|.++++++..+. -.+.++... . ..+...++ .+ +...+.. ...|-- ++=.-.+|+=+-++ ....++++++.
T Consensus 214 ~l~~~~~~~qP~~~~vvvn~R~~-~--~~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li 290 (384)
T smart00812 214 EFLAWLYNLSPVKDTVVVNDRWG-G--TGCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELI 290 (384)
T ss_pred HHHHHHHHhCCCCceEEEEcccc-c--cCCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHH
Confidence 5666666554442 112222210 0 00000001 11 1111111 011110 00011244443333 23467999999
Q ss_pred HHHHHHHHhCCce-eeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhhcccc
Q 003585 277 FAVARFIQKGGSF-FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALV 349 (809)
Q Consensus 277 ~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~ 349 (809)
..+.+..++||++ +|. +-+.+|.+....-..|+++.+.++...+++-
T Consensus 291 ~~l~~~Vsk~GnlLLNV--------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy 338 (384)
T smart00812 291 RDLVDIVSKGGNLLLNV--------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIY 338 (384)
T ss_pred HHHhhhcCCCceEEEcc--------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceee
Confidence 9999999999884 232 3456788866677889999999887666543
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.02 E-value=0.29 Score=47.62 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=65.1
Q ss_pred HHHHHHHCCCCEEEEccc----C-----CCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeE
Q 003585 63 LIRKAKDGGLDVIDTYVF----W-----NGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVW 133 (809)
Q Consensus 63 ~l~k~Ka~GlNtI~tyvf----W-----n~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~W 133 (809)
.++.+|++|+|+|..+.= | ..|.+.|+- ++.-|.+++++|++.||.|++|...- -.|+-.---|.|
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW 79 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEW 79 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCce
Confidence 467889999999998442 2 335555543 22356899999999999999998654 444445567999
Q ss_pred ecccCCeE-------------eecCChhhHHHHHHHHHHHHHHH
Q 003585 134 LKYVPGIS-------------FRTDNGPFKVAMQGFTQKIVQMM 164 (809)
Q Consensus 134 L~~~p~i~-------------~Rt~~~~y~~~~~~~~~~i~~~i 164 (809)
+...++=+ .-+-|.+|++.+.+-+++|+...
T Consensus 80 ~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 80 FVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 98654311 22336678877766666666544
No 51
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.75 E-value=0.063 Score=61.87 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce--eeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH--YNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~--ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~ 135 (809)
..++++|+.||+||+|+.||-|-|+..-|..+. .+=.|-...+++|+.|.++|+.-++-. .+=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 457899999999999999999999999996554 888888999999999999999976653 1233799998
Q ss_pred cc-CCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 136 YV-PGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 136 ~~-p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+. -|-. |..-.++..+|.+.+++.++
T Consensus 131 ~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 76 3432 33334444555555555554
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.53 E-value=1.4 Score=53.31 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=80.9
Q ss_pred HHHHHHCCCCEEEE-cccCCCCCCCCc---------eeeecccchHHHHHHHHHHcCCEEEEccCccccc-----ccCCC
Q 003585 64 IRKAKDGGLDVIDT-YVFWNGHEPSPG---------HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCA-----EWNFG 128 (809)
Q Consensus 64 l~k~Ka~GlNtI~t-yvfWn~hEp~~G---------~ydF~G~~dl~~fl~la~~~GL~VilR~GPyica-----Ew~~G 128 (809)
|.-+|++|+|+|+. .|+.+-....=| .-.|.+..||.+|++.|++.||.|||-.=+-=++ -+.+.
T Consensus 163 ~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~ 242 (613)
T TIGR01515 163 IPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFD 242 (613)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccC
Confidence 37779999999998 676532111001 1134556799999999999999999875332121 12233
Q ss_pred CCCeEecccCC---------eEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc--------ccccCCCcc
Q 003585 129 GFPVWLKYVPG---------ISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI--------ENEYGPESK 191 (809)
Q Consensus 129 G~P~WL~~~p~---------i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QI--------ENEyg~~~~ 191 (809)
|.|.|....+. ..+-..++.-++++...++..++...=..+-..-=..++.++- .||++.-
T Consensus 243 ~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~-- 320 (613)
T TIGR01515 243 GTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGR-- 320 (613)
T ss_pred CCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCc--
Confidence 44544432221 1233345544444444444433332111221111123332221 2444321
Q ss_pred cCCcchHHHHHHHHHHHHcCCCCcceEe
Q 003585 192 SLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (809)
Q Consensus 192 ~~~~~~~~y~~~l~~~~~~~g~~vP~~~ 219 (809)
.......|++.+++.+++...++-++.
T Consensus 321 -~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 321 -ENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred -CChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 123467899999999988776665544
No 53
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.62 E-value=0.74 Score=50.99 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=71.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCC-------CCCCC-------CceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWN-------GHEPS-------PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn-------~hEp~-------~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyi 121 (809)
.++.-++.|+++|++|+|+|=.=|-+. -.+|. +|. + -|.--|..+|+.|++.||.|+... .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 678889999999999999997544431 22221 111 0 012279999999999999999765 111
Q ss_pred ccccCC----CCCCeEec-ccCCeEeec----CCh----hhHHHHHHHHHHHHHHH-HccccccccCCceEEecccc
Q 003585 122 CAEWNF----GGFPVWLK-YVPGISFRT----DNG----PFKVAMQGFTQKIVQMM-KNEKLFASQGGPIILSQIEN 184 (809)
Q Consensus 122 caEw~~----GG~P~WL~-~~p~i~~Rt----~~~----~y~~~~~~~~~~i~~~i-~~~~l~~~~gGpII~~QIEN 184 (809)
...-.. -.-|.|+. +.|+..... .+. +-..+|++|+..++..| +++ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 110111 12478875 456643333 221 23467888888866655 433 466778773
No 54
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.66 E-value=0.21 Score=57.28 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=107.2
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCC-CC---CCceeee-cccchHHHHHHHHHHc
Q 003585 35 AILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGH-EP---SPGHYNF-EGSYDLVRFIKTVQRV 109 (809)
Q Consensus 35 ~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~h-Ep---~~G~ydF-~G~~dl~~fl~la~~~ 109 (809)
.|.++++++..++..--++++.-++-+++|+-|+.+|+++++.. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 48889999888887777888888888899999999999999984 454 66 2332222 2345789999999999
Q ss_pred CCEEEEccCcccccccCCCCCCeEec----ccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccc
Q 003585 110 GLYAHLRIGPYVCAEWNFGGFPVWLK----YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENE 185 (809)
Q Consensus 110 GL~VilR~GPyicaEw~~GG~P~WL~----~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENE 185 (809)
+|+|+++- |.+==.+||.=.-+. +.|+-.+ -|+.++..-++|+..+++-.| ....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998773 333223455322111 1233111 256666667788888777555 3458888999999
Q ss_pred cCCCcccCCcchHHHHHHHHHHHH
Q 003585 186 YGPESKSLGAAGHAYVNWAAKMAV 209 (809)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~ 209 (809)
.... -...+..+++|++.|..
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHH
Confidence 3221 12357789999999974
No 55
>PRK05402 glycogen branching enzyme; Provisional
Probab=90.45 E-value=2.4 Score=52.36 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEE-cccCC----CCCCCCce-----eeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 64 IRKAKDGGLDVIDT-YVFWN----GHEPSPGH-----YNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 64 l~k~Ka~GlNtI~t-yvfWn----~hEp~~G~-----ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
|.-+|++|+|+|+. .|+=. .|--.+.. =.|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999996 45410 01111111 124556799999999999999999874
No 56
>PRK09936 hypothetical protein; Provisional
Probab=90.24 E-value=0.69 Score=50.45 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=47.0
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc-chHHHHHHHHHHcCCEEEEc
Q 003585 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS-YDLVRFIKTVQRVGLYAHLR 116 (809)
Q Consensus 53 ~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~-~dl~~fl~la~~~GL~VilR 116 (809)
.+++++.|+++++.+|+.|++|+=. =|..- |.=||.|. ..|.+.++.|++.||.|++-
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 4689999999999999999998754 45443 11188765 58999999999999999876
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=90.04 E-value=0.82 Score=46.03 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=47.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCC-------CCCcee-----eecccchHHHHHHHHHHcCCEEEEccCcccccc
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHE-------PSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hE-------p~~G~y-----dF~G~~dl~~fl~la~~~GL~VilR~GPyicaE 124 (809)
-+-+.+.|.-+|++|+|+|..-=++..-+ -.+..| .|....||.+|++.|+++||.||+-.=|-=++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 34566777789999999999743322221 122222 455668999999999999999998875544444
No 58
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.45 E-value=4.2 Score=43.75 Aligned_cols=131 Identities=13% Similarity=0.181 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEec
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPyicaEw~~GG~P~WL~ 135 (809)
..-|++.|+.++++|++.|+.-+ +..| ..+...+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 35699999999999999999942 2222 223344554 3578899999999999875 43321 11111
Q ss_pred ccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCc---chHHHHHHHHHHHHcCC
Q 003585 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (809)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (809)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. .....+ .-.+.++.+.+++++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 112356666666777777777777 33 56766542 111100 000001 12245566777777777
Q ss_pred CCc
Q 003585 213 TGV 215 (809)
Q Consensus 213 ~~v 215 (809)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.14 E-value=5 Score=48.84 Aligned_cols=145 Identities=13% Similarity=0.148 Sum_probs=75.7
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccc-----ccc
Q 003585 64 IRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVC-----AEW 125 (809)
Q Consensus 64 l~k~Ka~GlNtI~t-yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyic-----aEw 125 (809)
+.-+|++|+|+|+. .|. |.+. .|.+ .|.+..||.+|++.|+++||.|||-.=|-=. +-+
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~ 250 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLA 250 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhh
Confidence 46689999999995 231 3221 1111 2344579999999999999999987422111 112
Q ss_pred CCCCCCeEecccCC---------eEeecCChhhHHHHHHHHHHHHHHHHc----cccccccCCceEE-------eccccc
Q 003585 126 NFGGFPVWLKYVPG---------ISFRTDNGPFKVAMQGFTQKIVQMMKN----EKLFASQGGPIIL-------SQIENE 185 (809)
Q Consensus 126 ~~GG~P~WL~~~p~---------i~~Rt~~~~y~~~~~~~~~~i~~~i~~----~~l~~~~gGpII~-------~QIENE 185 (809)
.+-|.|.+-..++. ..+...++. |++|+-..+..-.+ ..+-..--..|+- | +.|+
T Consensus 251 ~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~e----Vr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~-~~~~ 325 (639)
T PRK14706 251 HFDGGPLYEYADPRKGYHYDWNTYIFDYGRNE----VVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEW-VPNI 325 (639)
T ss_pred ccCCCcceeccCCcCCcCCCCCCcccCCCCHH----HHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccc-cccc
Confidence 22344544222221 112233443 33333332222211 1111110011111 2 6788
Q ss_pred cCCCcccCCcchHHHHHHHHHHHHcCCCCcceEe
Q 003585 186 YGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVM 219 (809)
Q Consensus 186 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~ 219 (809)
||.-. ...+..|+++|.+.+++...++-+|.
T Consensus 326 ~gg~~---n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 326 HGGRE---NLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred cCCcc---cHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 87532 24678899999999998776654443
No 60
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=88.29 E-value=10 Score=46.97 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHCCCCEEEE-ccc-------CCCCCC---CCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003585 57 PEMWEDLIRKAKDGGLDVIDT-YVF-------WNGHEP---SPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~t-yvf-------Wn~hEp---~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (809)
.+.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|.+..||.+||+.|+++||.|||-.=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456888999999999999996 232 332210 00 113455679999999999999999987544
No 61
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.47 E-value=1 Score=50.83 Aligned_cols=70 Identities=24% Similarity=0.228 Sum_probs=48.2
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003585 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (809)
Q Consensus 46 ~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyi 121 (809)
++=|+++...+.+.....|++|++.|+..|=| ++|.|+...=+. ...+..++++|+++||.|++-+.|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 45577777778999999999999999988888 999999632111 13788999999999999999987744
No 62
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=87.14 E-value=4.5 Score=43.50 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHc-CCEEEEccCcccccccCCCCCCeEecc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~-GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
.-|++.|+.+|++|++.|+.-+....-.. .......++.++.++++++ ++.+.+- +||.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~--------------- 69 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSVH-APYL--------------- 69 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEEE-cCce---------------
Confidence 67999999999999999998554321111 1111446899999999999 6665543 2331
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccc
Q 003585 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN 184 (809)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIEN 184 (809)
..+...++.-+++..+.+++.++..+ .+ |-+.|.+....
T Consensus 70 ---~~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 70 ---INLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ---eccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 11223344445555555666666666 32 45566665443
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.06 E-value=11 Score=46.49 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeecccchHHHHHHHHHHcCCEEEEccCccccc
Q 003585 62 DLIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (809)
Q Consensus 62 ~~l~k~Ka~GlNtI~t-yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyica 123 (809)
+.|.-+|++|+|+|+. .|+ |.+. .|.+ .|....||.+|++.|+++||.|||-.=|-=++
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~ 345 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVSAHFP 345 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 3467789999999996 343 3221 1111 34556799999999999999999886443333
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.82 E-value=10 Score=49.42 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=38.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCCC-----CCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 62 DLIRKAKDGGLDVIDT-YVF-------WNGH-----EPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 62 ~~l~k~Ka~GlNtI~t-yvf-------Wn~h-----Ep~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+.|.-+|++|+|+|+. .|+ |.+. .|. =.|.+..||.+|++.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~---~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT---SRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC---cccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3468899999999996 442 3221 111 134456799999999999999999874
No 65
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.43 E-value=8 Score=47.02 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 63 LIRKAKDGGLDVIDT-YVF-------WNG-----HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 63 ~l~k~Ka~GlNtI~t-yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.|.-+|++|+|+|+. .|+ |.+ ..+.+ .|.+..||.+||+.|+++||.|||-.
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 358899999999995 453 211 11111 35566799999999999999999874
No 66
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.21 E-value=5.4 Score=42.67 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEeccc
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPyicaEw~~GG~P~WL~~~ 137 (809)
-|++.|+.++++|++.|+..+. ..|+. ....+|+ ..++.++-++++++||.|. +.++.+ + .+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~-~~~~~-~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------- 79 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVD-ESDER-LARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------- 79 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-Ccccc-cccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc-------
Confidence 5899999999999999999532 22210 1122333 3478999999999999875 322210 0 01
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcc-cCCcchHHHHHHHHHHHHcCCCCc
Q 003585 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESK-SLGAAGHAYVNWAAKMAVGLDTGV 215 (809)
Q Consensus 138 p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 215 (809)
.+.+.|+...++..+.++++++..+ .| |.+.|.+---..+..... ..-..-.+.++.+.+++++.|+.+
T Consensus 80 ---~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ---PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1233566666666667777777766 33 556664421000000000 000112346777888888887754
No 67
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=85.18 E-value=9.9 Score=42.70 Aligned_cols=138 Identities=15% Similarity=0.242 Sum_probs=89.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHH---HcCCEEEEccCcccccccCCCCCC
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ---RVGLYAHLRIGPYVCAEWNFGGFP 131 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~---~~GL~VilR~GPyicaEw~~GG~P 131 (809)
..|+..+..++.||+.|++.--.|-.| |.|++-|.+-++..- +.+|...|. |.+-.|. =
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~ 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----R 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----h
Confidence 478899999999999999999998777 456667777776653 345555554 1222221 1
Q ss_pred eEecccCCeEeecCChhhH--HHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHH
Q 003585 132 VWLKYVPGISFRTDNGPFK--VAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAV 209 (809)
Q Consensus 132 ~WL~~~p~i~~Rt~~~~y~--~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (809)
.|-.....+.+- ..|. +..+++++.|++.+++..++--+|-||+++=--.++ ++-++.++.+++.|+
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 122111222111 1121 234677788889999887777799999987322222 256789999999999
Q ss_pred cCCCCcceEeeC
Q 003585 210 GLDTGVPWVMCK 221 (809)
Q Consensus 210 ~~g~~vP~~~~~ 221 (809)
+.|+.-+.+...
T Consensus 186 ~~G~~giyii~~ 197 (345)
T PF14307_consen 186 EAGLPGIYIIAV 197 (345)
T ss_pred HcCCCceEEEEE
Confidence 999987655433
No 68
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.74 E-value=4.6 Score=46.53 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=81.0
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEE------cc-------cCCCCCCCCceee-ecccchHHHHHHHHHHcCCEEEEccCcc
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDT------YV-------FWNGHEPSPGHYN-FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~t------yv-------fWn~hEp~~G~yd-F~G~~dl~~fl~la~~~GL~VilR~GPy 120 (809)
..+..-.+.|.+++++|+|||-. |. +|..-- ||..- =.|..-|...|++|++.||.|+.+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 37888899999999999999963 22 243332 33221 1244478888999999999999988887
Q ss_pred cccccCCCC---CCeEeccc-CCeEe-ecCC-------hhhHHHHHHHHHH-HHHHHHccccccccCCceEEeccccccC
Q 003585 121 VCAEWNFGG---FPVWLKYV-PGISF-RTDN-------GPFKVAMQGFTQK-IVQMMKNEKLFASQGGPIILSQIENEYG 187 (809)
Q Consensus 121 icaEw~~GG---~P~WL~~~-p~i~~-Rt~~-------~~y~~~~~~~~~~-i~~~i~~~~l~~~~gGpII~~QIENEyg 187 (809)
.-|--..-. -|.|+... |+... |... .++.-+++.|+.. ++++++++ .|=++|.+.=+.
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 765421111 26666543 44332 3331 3566889999888 66677744 566788876654
No 69
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.18 E-value=1.8 Score=43.49 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEee
Q 003585 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFR 143 (809)
Q Consensus 64 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~R 143 (809)
|+.++++|++.|+............ ..+++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 5789999999999865533222111 34789999999999999653221111 111 111133
Q ss_pred cCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccc--cccCCCccc-CCcchHHHHHHHHHHHHcCCCCc
Q 003585 144 TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE--NEYGPESKS-LGAAGHAYVNWAAKMAVGLDTGV 215 (809)
Q Consensus 144 t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~v 215 (809)
+.+++ .+...+.+.+.++..+ .+ |.+.|.+..- +........ .-+.-.+.++.+.+++.+.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 44444 7777778888888887 33 6677777754 222211000 00123346677777777777653
No 70
>PRK01060 endonuclease IV; Provisional
Probab=80.99 E-value=31 Score=37.00 Aligned_cols=93 Identities=14% Similarity=0.231 Sum_probs=59.6
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE---EEccCcccccccCCCCCCeEecc
Q 003585 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA---HLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 60 W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V---ilR~GPyicaEw~~GG~P~WL~~ 136 (809)
+++.|++++++|++.||..+- +-|.-.++.++- .++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 788999999999999998542 112211222222 26888999999999973 22 23331
Q ss_pred cCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEec
Q 003585 137 VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (809)
Q Consensus 137 ~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~Q 181 (809)
+.+-+.|+..+++..+.+++.++..+ .+ |.++|-+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334577778777777888777766 33 45555553
No 71
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=80.74 E-value=24 Score=37.44 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=37.9
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 50 iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
+.|-+.+ ++++|++++++|++.|+.. . |. ..++.++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4455554 6788999999999999982 1 11 14799999999999999854
No 72
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=80.71 E-value=18 Score=41.35 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecc-cchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEec
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG-SYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G-~~dl~~fl~la~~~GL~Vi-lR~GPyicaEw~~GG~P~WL~ 135 (809)
....+++++++++|++.|+.. ..+ ..|-.++.+. ..++.++-++++++||.|. +-++-+....|..|+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~---~~d-l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~------ 101 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFH---DDD-LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG------ 101 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEec---ccc-cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC------
Confidence 345689999999999999963 111 1111111100 2357889999999999975 333211112222222
Q ss_pred ccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 ------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 ------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334567666665566666666666
No 73
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.72 E-value=26 Score=37.39 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccC
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVP 138 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p 138 (809)
-|++.|+.++++|++.|+...-. .|+-.+ +++ ..++.++-++++++||.|.. .+|. .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~--- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM--- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc---
Confidence 48899999999999999983211 011111 121 24788899999999998753 2221 123333321
Q ss_pred CeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCC---cchHHHHHHHHHHHHcCCCCc
Q 003585 139 GISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLG---AAGHAYVNWAAKMAVGLDTGV 215 (809)
Q Consensus 139 ~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~~v 215 (809)
..++.-+++..+.+++.++..+ .+ |.+.|.+-.-.. +. ..... +.-.+.++.|.+++.+.|+.+
T Consensus 79 -----~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~-~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 -----LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHA-GY-LTPPNVIWGRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCC-CC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 1234445555556666666555 22 555554422111 00 00000 122346778888888877643
No 74
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=79.12 E-value=5.2 Score=47.04 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=43.7
Q ss_pred EEEecCCCCCHhHHHHHHHHHH-HCCCCEEEEcccCCCC--------C-CCCc--eeeecccchHHHHHHHHHHcCCEEE
Q 003585 47 SGSIHYPRSTPEMWEDLIRKAK-DGGLDVIDTYVFWNGH--------E-PSPG--HYNFEGSYDLVRFIKTVQRVGLYAH 114 (809)
Q Consensus 47 sG~iHy~R~~~~~W~~~l~k~K-a~GlNtI~tyvfWn~h--------E-p~~G--~ydF~G~~dl~~fl~la~~~GL~Vi 114 (809)
-|+-|.-...++.|+..|+.++ +.|+.-|+. |++. | ..+| .|||+ .|+++++...+.||.-.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 4555555567788999999886 789999987 4333 1 1233 39999 99999999999999988
Q ss_pred EccC
Q 003585 115 LRIG 118 (809)
Q Consensus 115 lR~G 118 (809)
++.|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7766
No 75
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=79.09 E-value=3.4 Score=48.45 Aligned_cols=61 Identities=8% Similarity=0.211 Sum_probs=43.0
Q ss_pred HhHHH---HHHHHHHHCCCCEEEE-cccCCC-----CCCCCce-e-------------eecccchHHHHHHHHHHcCCEE
Q 003585 57 PEMWE---DLIRKAKDGGLDVIDT-YVFWNG-----HEPSPGH-Y-------------NFEGSYDLVRFIKTVQRVGLYA 113 (809)
Q Consensus 57 ~~~W~---~~l~k~Ka~GlNtI~t-yvfWn~-----hEp~~G~-y-------------dF~G~~dl~~fl~la~~~GL~V 113 (809)
.+.|. +.|.-+|++|+++|-. .+|-+. |--.+-. | .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35575 4566779999999987 465443 2222222 2 2335679999999999999999
Q ss_pred EEcc
Q 003585 114 HLRI 117 (809)
Q Consensus 114 ilR~ 117 (809)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9886
No 76
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=79.02 E-value=7.3 Score=43.44 Aligned_cols=112 Identities=17% Similarity=0.290 Sum_probs=69.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCceeeec-c-cchHHHHHHHHHHcCCEEEEccCcccccccC
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFE-G-SYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-------yvfWn~hEp~~G~ydF~-G-~~dl~~fl~la~~~GL~VilR~GPyicaEw~ 126 (809)
.++.-+..|+.+|+.|+|+|-. .|.+....|..-+..-. . ..|+.++++.++++|+|+|.|+==|= ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 4567788999999999999874 34454444433222221 2 36999999999999999999973211 0000
Q ss_pred CCCCCeEecccC-CeEeecCC-----hhhHHHHHHHHHHHHHHHHccc
Q 003585 127 FGGFPVWLKYVP-GISFRTDN-----GPFKVAMQGFTQKIVQMMKNEK 168 (809)
Q Consensus 127 ~GG~P~WL~~~p-~i~~Rt~~-----~~y~~~~~~~~~~i~~~i~~~~ 168 (809)
..--|.|-.+.. |-..|..+ .+|.+++.+|.-.|++.+++..
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 001244443211 11111111 3688999999999999998554
No 77
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.89 E-value=2 Score=45.76 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCC----CCCCcee-e----ecccchHHHHHHHHHHcCCEEEEcc
Q 003585 61 EDLIRKAKDGGLDVIDTYVFWNGH----EPSPGHY-N----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvfWn~h----Ep~~G~y-d----F~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.+.|.-+|++|+|+|..-=++... --.+-.| + |.+..||.+|++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 356888999999999974333322 1111111 2 2345799999999999999999875
No 78
>PRK09989 hypothetical protein; Provisional
Probab=78.22 E-value=20 Score=38.18 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 60 W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
.+++|++++++|++.|+...+|. .+..++-++.+++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67899999999999999844332 2466888889999999874
No 79
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.65 E-value=40 Score=35.57 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
-+++.+++++++|++.|+....+ ..++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 37889999999999999984321 13688899999999999864
No 80
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=77.09 E-value=7.4 Score=50.80 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=71.8
Q ss_pred cEEECCEEeEEEEE-Ee--cCCCC--CHhHHHHHHHHHHHCCCCEEEE-ccc-CC---CCCCCCceee----e----ccc
Q 003585 35 AILINGQRRILISG-SI--HYPRS--TPEMWEDLIRKAKDGGLDVIDT-YVF-WN---GHEPSPGHYN----F----EGS 96 (809)
Q Consensus 35 ~f~idGk~~~l~sG-~i--Hy~R~--~~~~W~~~l~k~Ka~GlNtI~t-yvf-Wn---~hEp~~G~yd----F----~G~ 96 (809)
.+.|||++++.+.+ +| ..++. +-+.|++.|..+|++|+|+|-. .++ =. ..=...+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 35566633333222 22 23443 5588999999999999999985 444 11 1001122222 3 366
Q ss_pred chHHHHHHHHHHc-CCEEEEccCcccccccCCCCC-CeEecccCCeEeecCChhhHHHHHH
Q 003585 97 YDLVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAMQG 155 (809)
Q Consensus 97 ~dl~~fl~la~~~-GL~VilR~GPyicaEw~~GG~-P~WL~~~p~i~~Rt~~~~y~~~~~~ 155 (809)
.|+.++++.+++. ||++|+-. =||+-+. =.||.++|+.-.-..+.+||+..-.
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A~e 238 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRPAIV 238 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhhHHH
Confidence 7999999999996 99999875 2555554 3588888875555556666654433
No 81
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.96 E-value=18 Score=38.74 Aligned_cols=125 Identities=14% Similarity=0.243 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEeccc
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYV 137 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPyicaEw~~GG~P~WL~~~ 137 (809)
-|.+.++.+|++|+..|+..+. ..++ ....++++ ..++.++-++++++||.|. +..+.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5899999999999999999432 1111 01112332 2468899999999999875 332210 0011
Q ss_pred CCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCc-------chHHHHHHHHHHHHc
Q 003585 138 PGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA-------AGHAYVNWAAKMAVG 210 (809)
Q Consensus 138 p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 210 (809)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+. |. ...++. .-.+.++.|.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113456666666777777777777 33 66776542 11 000111 113456777788877
Q ss_pred CCCCc
Q 003585 211 LDTGV 215 (809)
Q Consensus 211 ~g~~v 215 (809)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 77654
No 82
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=75.85 E-value=0.59 Score=55.76 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=48.3
Q ss_pred chhhhcccccccCCCCCCccccccCCCCCCCCCeEEe-ecCCCCeeeEEEeeeeCCCcccCcCcccccccCCchHHHHhh
Q 003585 728 SVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLL-QCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEK 806 (809)
Q Consensus 728 ~~~~vc~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~L-~C~~g~~Is~i~fASfG~p~G~Cg~f~~g~c~a~~s~~~v~k 806 (809)
+.+.+|.+--+.|.-+ +-... .|.++.+++.|.+|+||+.+|+|+.|..+.|.++++...+.+
T Consensus 309 p~dgl~~~pk~ghlk~----------------~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~ 372 (649)
T KOG0496|consen 309 PLDGLLRQPKYGHLKP----------------LHTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNK 372 (649)
T ss_pred ccchhhcCCCcccccc----------------chhhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCC
Confidence 3446777766666421 12222 355699999999999999999999999999999988877765
Q ss_pred h
Q 003585 807 A 807 (809)
Q Consensus 807 ~ 807 (809)
-
T Consensus 373 ~ 373 (649)
T KOG0496|consen 373 P 373 (649)
T ss_pred C
Confidence 3
No 83
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=75.41 E-value=10 Score=41.24 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=60.3
Q ss_pred cEEECCEEeEEEEE--EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec--ccchHHHHHHHHHHcC
Q 003585 35 AILINGQRRILISG--SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIKTVQRVG 110 (809)
Q Consensus 35 ~f~idGk~~~l~sG--~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~--G~~dl~~fl~la~~~G 110 (809)
.+.+.+.|++++.| ++| .++.-.+..+++|++|+..++.|.|=+.-. -|.|. |...+..+-+.|++.|
T Consensus 20 ~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~G 91 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYN 91 (266)
T ss_pred CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcC
Confidence 47777778889988 444 578888899999999999999998874433 23666 5788999999999999
Q ss_pred CEEEEcc
Q 003585 111 LYAHLRI 117 (809)
Q Consensus 111 L~VilR~ 117 (809)
|.++-.|
T Consensus 92 l~~~te~ 98 (266)
T PRK13398 92 LPVVTEV 98 (266)
T ss_pred CCEEEee
Confidence 9988775
No 84
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=75.25 E-value=3.4 Score=44.38 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
+...++-|+.+|++||++|+. ..|..+.+ ..+..++|+.++++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667788999999999999998 44555444 34777999999999999999988
No 85
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=74.90 E-value=5 Score=47.93 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=39.7
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCC-----CCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 61 EDLIRKAKDGGLDVIDT-YVF-------WNG-----HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~t-yvf-------Wn~-----hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.++|.-+|++|+|+|+. .|+ |.+ ..+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34688899999999996 342 322 12221 34556799999999999999999874
No 86
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=73.58 E-value=47 Score=39.98 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=80.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCcee--------eeccc----chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPSPGHY--------NFEGS----YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~ty-vfWn~hEp~~G~y--------dF~G~----~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
.++.=+..|..|+..-||.|+.| ..|.+|.|-|+.= |+.|+ .-+...|+.|++.||.++.=--=|.+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 35677889999999999999999 7899999987643 23333 35789999999999999854333333
Q ss_pred ccc--CCCCCCeEecc-cCC------eEe--------e---cCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecc
Q 003585 123 AEW--NFGGFPVWLKY-VPG------ISF--------R---TDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (809)
Q Consensus 123 aEw--~~GG~P~WL~~-~p~------i~~--------R---t~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QI 182 (809)
-+. .+|=.|.|-+. +++ ..+ . ..|+.+.++.-.=+.+.++.+.=...+..+=|+.--+
T Consensus 196 ~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~-- 273 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTV-- 273 (559)
T ss_dssp ETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEE--
T ss_pred ccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCcc--
Confidence 332 35667888753 221 011 1 1245555554444444444443233344443444333
Q ss_pred ccccCCCcccCCcchHHHHHHHHHHHHcCCCCcceEeeC
Q 003585 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (809)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (809)
-+.-|.... .-...|...|.++-..+ .+.+++++.
T Consensus 274 ~d~~G~~i~---~l~~~y~~Fi~~~K~~~-~~k~lv~N~ 308 (559)
T PF13199_consen 274 YDYDGNKIY---DLSDGYASFINAMKEAL-PDKYLVFNA 308 (559)
T ss_dssp GGTT---GG---ECHHHHHHHHHHHHHHS-TTSEEEEB-
T ss_pred ccCCCCCch---hhHHHHHHHHHHHHHhC-CCCceeeec
Confidence 222232110 12456777777766554 556676644
No 87
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=73.42 E-value=3.3 Score=41.87 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=28.0
Q ss_pred CCceEEEEECCeeeeeeee-ccccCCCcccccCCCcCCccccCCCCCCceeeeecCccccccCccEEEEE
Q 003585 644 SMGKGQVWINGQSIGRYWM-AYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVF 712 (809)
Q Consensus 644 g~gKG~vwVNG~niGRYWp-~~~~g~~~~c~y~G~~~~~kc~~~cg~PqqtlYhVP~~~Lk~g~N~LVvf 712 (809)
..++=+|.||| ..+..+. .+. .++|.||+ -+-+|..+.--+.||++.|++|.|+|.|=
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~---~d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt 149 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFG---NDNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLT 149 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEE
T ss_pred CCCCEEEEEcC-ccCCccccccC---CCCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEE
Confidence 44677999999 7777663 221 13344444 12234456566789999999999999764
No 88
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=73.26 E-value=47 Score=35.38 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=64.8
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee-eecccchHHHHHHHHHHcCCEEEEccCcccccccC
Q 003585 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY-NFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWN 126 (809)
Q Consensus 48 G~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~y-dF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~ 126 (809)
|.-+..+-+ -.+.|+++.+.|++.|+. ...+|..-.- +++ ..++.++-++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 333444444 337899999999999999 5555533110 122 236889999999999986542 3432
Q ss_pred CCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEec
Q 003585 127 FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (809)
Q Consensus 127 ~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~Q 181 (809)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -------------~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------------INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------------ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12445677777777778888777776 33 55655543
No 89
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=72.87 E-value=7.4 Score=47.11 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=42.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-------CCCCCCCCceee------ecccchHHHHHHHHHHcCCEEEEc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-------WNGHEPSPGHYN------FEGSYDLVRFIKTVQRVGLYAHLR 116 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-yvf-------Wn~hEp~~G~yd------F~G~~dl~~fl~la~~~GL~VilR 116 (809)
..|.=.+.|--+|+||+++||. .|. |.+ .|..- |....||.+||+.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5666677899999999999996 221 432 11111 334479999999999999999987
No 90
>PLN02960 alpha-amylase
Probab=71.41 E-value=1.1e+02 Score=38.79 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCCCCCC--CceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 61 EDLIRKAKDGGLDVIDT-YVF-------WNGHEPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~t-yvf-------Wn~hEp~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+++|.-+|++|+|+|+. .|+ |.+.--- .=.-.|....||.+||+.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35688999999999996 443 3321000 001123455799999999999999999885
No 91
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=71.14 E-value=5.9 Score=47.32 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=43.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCceee----------ecccchHHHHHHHHHHcCCEEEEccCc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHYN----------FEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~yd----------F~G~~dl~~fl~la~~~GL~VilR~GP 119 (809)
+-.-+.++|.-+|++|+|+|-. .+|-+-.. ..-|+ |.+..||.+|++.|+++||+|||-.=|
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3445677889999999999986 44432110 01222 445579999999999999999987533
No 92
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=70.82 E-value=17 Score=36.75 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=32.6
Q ss_pred CeeeecCcceEEEEEECCEEEEEEE----c-cccC--ceeEEeecccccCCCCeEEEEEecCCc
Q 003585 494 PTLTVESAGHAVHVFINGQFLGSAF----G-TREN--RRFTFSGPANLRAGINKIALLSIAVGL 550 (809)
Q Consensus 494 ~~L~v~~~~d~~~VfVNg~~vGs~~----~-~~~~--~~~~~~~~i~l~~G~n~L~lLven~Gr 550 (809)
+.|.|...+ +-.+||||+.||... . +... .-.+++..--|+.|.|.|.+++-+-..
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 467776665 458999999999754 1 1111 112345444588999999999976443
No 93
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=69.38 E-value=12 Score=31.99 Aligned_cols=33 Identities=15% Similarity=0.464 Sum_probs=25.3
Q ss_pred CcceEEEEEECCEEEEEEEccccC--ceeEEeecc
Q 003585 500 SAGHAVHVFINGQFLGSAFGTREN--RRFTFSGPA 532 (809)
Q Consensus 500 ~~~d~~~VfVNg~~vGs~~~~~~~--~~~~~~~~i 532 (809)
...|.|.||++++|+|++++..++ .++.|+..|
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~I 59 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMAI 59 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEEE
Confidence 568999999999999999986544 456665443
No 94
>PRK09505 malS alpha-amylase; Reviewed
Probab=68.94 E-value=8.7 Score=47.19 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCCCCCC----Cc------------------eeeecccchHHHHHHHHHHcCCEEEEc
Q 003585 60 WEDLIRKAKDGGLDVIDT-YVFWNGHEPS----PG------------------HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (809)
Q Consensus 60 W~~~l~k~Ka~GlNtI~t-yvfWn~hEp~----~G------------------~ydF~G~~dl~~fl~la~~~GL~VilR 116 (809)
+.+.|.-+|++|+|+|-. .++=+.|... .| .-.|....||.+|++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888899999999985 5654444321 11 112445679999999999999999988
Q ss_pred cC
Q 003585 117 IG 118 (809)
Q Consensus 117 ~G 118 (809)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 63
No 95
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=68.59 E-value=8.5 Score=46.57 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCCCCCCCcee-----eecc--------cchHHHHHHHHHHcCCE
Q 003585 62 DLIRKAKDGGLDVIDT-YVF---------------WNGHEPSPGHY-----NFEG--------SYDLVRFIKTVQRVGLY 112 (809)
Q Consensus 62 ~~l~k~Ka~GlNtI~t-yvf---------------Wn~hEp~~G~y-----dF~G--------~~dl~~fl~la~~~GL~ 112 (809)
+.|.-+|++|+|+|+. .|+ |-+. +-.| .|.. ..+|.+||+.|+++||.
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~---~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYD---PLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCC---CccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 4588999999999996 444 2222 1111 0111 26899999999999999
Q ss_pred EEEcc
Q 003585 113 AHLRI 117 (809)
Q Consensus 113 VilR~ 117 (809)
|||-.
T Consensus 245 VilDv 249 (605)
T TIGR02104 245 VIMDV 249 (605)
T ss_pred EEEEE
Confidence 99875
No 96
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=67.81 E-value=7.2 Score=41.97 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=39.7
Q ss_pred CCeEEeecCCCCeeeEEEeeeeCC--CcccC--cCcccc--cccCCchHHHHhhhC
Q 003585 759 NAKVLLQCAPGQSITSIEFASFGT--PSGTC--GSFQKG--TCHAPNSHAMLEKAL 808 (809)
Q Consensus 759 ~~~~~L~C~~g~~Is~i~fASfG~--p~G~C--g~f~~g--~c~a~~s~~~v~k~~ 808 (809)
+..+.|+||.|.+|| |+=|=||. +. .| .+++.- +|-.+.|++|+.+.|
T Consensus 43 G~~i~L~CP~~dvIs-v~sanYGR~~~~-iC~pd~~~~~Si~C~~p~s~~i~~~rC 96 (265)
T KOG4729|consen 43 GERITLSCPRGDVIS-VQSANYGRFSDK-ICDPDPGREESINCYLPKSFSILSSRC 96 (265)
T ss_pred CceEEEEcCCCCEEE-EEecccCccccc-ccCCccccccchhccChHHHHHHHHhc
Confidence 668999999998885 78899997 44 88 445555 499999999999998
No 97
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.78 E-value=1.8 Score=45.68 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=43.5
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEc
Q 003585 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR 116 (809)
-...+++.++|.+.|.+.++|..-.+..-.+..+ ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 4578899999999999999997655554444444 8999999999999999999
No 98
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=67.77 E-value=10 Score=45.46 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHCCCCEEEE-cccCCCCCCC-Ccee----------eecccchHHHHHHHHHHcCCEEEEcc
Q 003585 58 EMWEDLIRKAKDGGLDVIDT-YVFWNGHEPS-PGHY----------NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~t-yvfWn~hEp~-~G~y----------dF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.-+.++|.-+|++|+++|-. .++-+ |. ..-| .|....||.+|++.|+++||+|||-.
T Consensus 33 ~gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 33 RGVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34668889999999999987 45422 11 1122 23455799999999999999999865
No 99
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=67.37 E-value=11 Score=40.42 Aligned_cols=53 Identities=11% Similarity=0.330 Sum_probs=43.7
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (809)
....++-++.+|+.||++|+. ..|..+++ ..+..++|+.+++.||.|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 366778888999999999998 45665554 347889999999999999988874
No 100
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=67.00 E-value=19 Score=41.25 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.+.+.|+++|+.+|++||+.... |+.-+. .+.- ..|...++.|++.|+++++-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaL----Nig~~d--~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFAL----NIGSSD--SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----ecccCC--cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 38899999999999999999998 665222 2332 378889999999999999886
No 101
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=66.35 E-value=15 Score=40.46 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=48.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCC-Cceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
.+.+..++.++++|+.||.+=..++=...+... -+.|.|.-. -|..+|++..+++|++|++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 377788999999999996553333332233221 235665533 38999999999999999998878774
No 102
>PRK10785 maltodextrin glucosidase; Provisional
Probab=65.88 E-value=12 Score=45.40 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHHHCCCCEEEE-cccCC--CCCCCCcee-----eecccchHHHHHHHHHHcCCEEEEcc
Q 003585 61 EDLIRKAKDGGLDVIDT-YVFWN--GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~t-yvfWn--~hEp~~G~y-----dF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.+.|.-+|++|+|+|-. .||=+ .|---...| .|.+..||.+|++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 55788899999999996 56632 121111111 24456799999999999999999864
No 103
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=65.61 E-value=13 Score=41.48 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=58.1
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce-eeecccchHHHHHHHHHHcCCEEEEccCcccccc
Q 003585 46 ISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (809)
Q Consensus 46 ~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~-ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaE 124 (809)
++=++.+.|.+.+.=...|++|...|+.-|=| ++|.|.+.. =-|. -+.++++.|++.||+||+-+-|=|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45577788999888889999999999988877 999998742 1122 577889999999999999998766554
No 104
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=63.61 E-value=9.5 Score=45.46 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=42.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCCCCCCCcee----------eecccchHHHHHHHHHHcCCEEEEcc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEPSPGHY----------NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-yvfWn~hEp~~G~y----------dF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.=.-+.+.|.-+|++|+|+|-. .||=+.. ...-| .|.+..|+.++++.|++.||+|||-.
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3455778899999999999986 4441100 01112 23455799999999999999999863
No 105
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=63.26 E-value=11 Score=33.64 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=33.1
Q ss_pred eeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccc-cCCCCeEEEEEecCCcc
Q 003585 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANL-RAGINKIALLSIAVGLP 551 (809)
Q Consensus 495 ~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l-~~G~n~L~lLven~Gr~ 551 (809)
.|++.+-...++-||||+++|...... .+. ..+ ..|.++|++ +...|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPGH---QLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCCC---eEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 455555556999999999998865432 222 234 678888888 6666653
No 106
>PRK12677 xylose isomerase; Provisional
Probab=63.24 E-value=1.1e+02 Score=35.25 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec---ccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEe
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE---GSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWL 134 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~---G~~dl~~fl~la~~~GL~Vi-lR~GPyicaEw~~GG~P~WL 134 (809)
-+++.++++++.|+..|+.- .+..--|+.+ -...+.++.+++++.||.|. +-+.-|....+..|+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~----- 100 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA----- 100 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc-----
Confidence 36789999999999999872 1111112211 11358899999999999976 444322112222222
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 135 ~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 -------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 -------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445577777776666666666665
No 107
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=62.27 E-value=12 Score=44.27 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCC---ceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSP---GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~---G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~ 135 (809)
.+.++++.||++|+++-+.-+-|+..=|.- +.-+-+|..-...+|+...++|+..++-. -+=.+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 478999999999999999999999877752 46788888888899999999999866553 1334788887
Q ss_pred c-cCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEe
Q 003585 136 Y-VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILS 180 (809)
Q Consensus 136 ~-~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~ 180 (809)
+ .-+-.-+..=+.|+++++--|++..+++| ....=|...|+.+
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~ 207 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSI 207 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeee
Confidence 6 34432233335688888888888888888 4433355555443
No 108
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=61.67 E-value=44 Score=41.09 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=68.9
Q ss_pred HhHHHHHHHHHHHCCCCEEE---------------EcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCccc
Q 003585 57 PEMWEDLIRKAKDGGLDVID---------------TYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYV 121 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~---------------tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyi 121 (809)
.+.-...|+.+|++|+|||- .|++|.+.--+..-|| -. ...++.+.|+.|..+..||-
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~------~~-aw~l~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN------RV-AWQLRTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC------HH-HHHHHHhhCCEEEEecccee
Confidence 35577899999999999995 4666733222222222 11 34558899999999999986
Q ss_pred cc---------ccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccccc
Q 003585 122 CA---------EWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY 186 (809)
Q Consensus 122 ca---------Ew~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEy 186 (809)
.. +++..+-|...+ |+--.| =.+|..++++|++.|.+-|+++ .+|=++|...+-
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 406 FDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 42 222122222111 110112 2467889999999999988843 256666766653
No 109
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=61.39 E-value=90 Score=36.02 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=58.8
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCC----ceeeeccc---chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGS---YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 50 iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~----G~ydF~G~---~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
-+|+.++.+.-.+.++++|++|++.+..=--|....... |.+.-+-. .-|..+++.+++.||..=|...|.+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 356778888899999999999998776655576542222 33322211 24999999999999999888888765
Q ss_pred cccC--CCCCCeEecccCC
Q 003585 123 AEWN--FGGFPVWLKYVPG 139 (809)
Q Consensus 123 aEw~--~GG~P~WL~~~p~ 139 (809)
++=. +-..|.|+...++
T Consensus 130 ~~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTT
T ss_pred cchhHHHHhCccceeecCC
Confidence 4311 3347999987655
No 110
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.35 E-value=89 Score=34.24 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=46.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCC--------CCCceeeeccc--chHHHHHHHHHHcCCEEEEccCc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHE--------PSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hE--------p~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GP 119 (809)
+.+.-++.++++++.||-+=..++=...|. -.-+.|+|+-. -|..++++..++.|++|++-+=|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 677788999999999987655544333332 12356777643 49999999999999999987644
No 111
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.31 E-value=71 Score=35.19 Aligned_cols=69 Identities=17% Similarity=0.379 Sum_probs=53.6
Q ss_pred CCCCHhHHHHHHHHHHHCCC--CEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccccc
Q 003585 53 PRSTPEMWEDLIRKAKDGGL--DVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (809)
Q Consensus 53 ~R~~~~~W~~~l~k~Ka~Gl--NtI~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyicaE 124 (809)
...+.+.-.+.++++++.|+ ++|..=..|- ..-|.|.|.-. -|..++++..++.|+++++..=|||+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 45688889999999999995 4555544452 34566666532 4899999999999999999999999864
No 112
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.72 E-value=65 Score=34.64 Aligned_cols=126 Identities=17% Similarity=0.344 Sum_probs=78.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeE
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVW 133 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G--~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~W 133 (809)
..-.|+++|.-+|++||+-|+. +..|.-+. +-||+. .-...+.+++++.|+. + |-+|
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~----i-pSmC----------- 74 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVR----I-PSMC----------- 74 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCC----c-cchh-----------
Confidence 3456999999999999999999 77777553 677763 2345678889999973 2 2222
Q ss_pred ecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCc----chHHH---HHHHHH
Q 003585 134 LKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGA----AGHAY---VNWAAK 206 (809)
Q Consensus 134 L~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~----~~~~y---~~~l~~ 206 (809)
|..+...-+-+.|+.-.+...+.+.+-...-. +| -|=-+|+- -|.-| |.+ ..+.| |+|..+
T Consensus 75 lSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQLA-GYDVY---YE~~d~eT~~rFi~g~~~a~~ 142 (287)
T COG3623 75 LSAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQLA-GYDVY---YEEADEETRQRFIEGLKWAVE 142 (287)
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEeec-cceee---eccCCHHHHHHHHHHHHHHHH
Confidence 11111122557899888888777777555544 33 34456763 23332 322 33344 456666
Q ss_pred HHHcCCCC
Q 003585 207 MAVGLDTG 214 (809)
Q Consensus 207 ~~~~~g~~ 214 (809)
+|.++.+.
T Consensus 143 lA~~aqV~ 150 (287)
T COG3623 143 LAARAQVM 150 (287)
T ss_pred HHHhhccE
Confidence 66665543
No 113
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=60.52 E-value=1.5e+02 Score=31.91 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=49.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--eeccc--chHHHHHHHHHHcCCEEEEccCccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NFEGS--YDLVRFIKTVQRVGLYAHLRIGPYV 121 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~y--dF~G~--~dl~~fl~la~~~GL~VilR~GPyi 121 (809)
..+...+.++++++.||-.=...+-+...+. .+.| +|.-. -|..+||+..++.|++|++-+=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 7778899999999999875555544444433 4556 55422 4899999999999999999998888
No 114
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=59.77 E-value=28 Score=39.25 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=59.1
Q ss_pred cEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecc--cchHHHHHHHHHHcCC
Q 003585 35 AILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEG--SYDLVRFIKTVQRVGL 111 (809)
Q Consensus 35 ~f~idGk~~~l~sG~iHy~R~-~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G--~~dl~~fl~la~~~GL 111 (809)
.+.|.|.++.++.| +--+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|..+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 46777888888888 3333 67777888889999999999999995 4333377875 5677777888999999
Q ss_pred EEEEcc
Q 003585 112 YAHLRI 117 (809)
Q Consensus 112 ~VilR~ 117 (809)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 988875
No 115
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=59.77 E-value=40 Score=41.63 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=36.8
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCC---CCCc-----eee----------e---cccchHHHHHHHHHHcCCEEEEcc
Q 003585 63 LIRKAKDGGLDVIDT-YVFWNGHE---PSPG-----HYN----------F---EGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 63 ~l~k~Ka~GlNtI~t-yvfWn~hE---p~~G-----~yd----------F---~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.|.-+|++|+|+|+. .||=...+ ...| -|| | ....+|.+||+.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 367899999999996 45411111 1111 011 1 124689999999999999999875
No 116
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=58.26 E-value=9.3 Score=32.46 Aligned_cols=39 Identities=26% Similarity=0.584 Sum_probs=26.6
Q ss_pred eeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCeEEE
Q 003585 495 TLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIAL 543 (809)
Q Consensus 495 ~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~L~l 543 (809)
.|.|.+.-.-|.|||||+++|... ..+. .+..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE
Confidence 577777777789999999999432 1221 25677766655
No 117
>PLN02361 alpha-amylase
Probab=57.54 E-value=22 Score=41.08 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCCEEEEcccCC---CCCCCCce-ee----ecccchHHHHHHHHHHcCCEEEEcc
Q 003585 62 DLIRKAKDGGLDVIDTYVFWN---GHEPSPGH-YN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 62 ~~l~k~Ka~GlNtI~tyvfWn---~hEp~~G~-yd----F~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+.|.-+|++|+++|-..=+.. .|--.+.. |+ |....+|.++|+.|++.||.||+-.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 356667999999998743221 12112222 22 3445799999999999999999865
No 118
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=57.50 E-value=15 Score=48.16 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-cccCCCCCCC---Cc--e---ee----------ec--ccchHHHHHHHHHHcCCEEEEcc
Q 003585 62 DLIRKAKDGGLDVIDT-YVFWNGHEPS---PG--H---YN----------FE--GSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 62 ~~l~k~Ka~GlNtI~t-yvfWn~hEp~---~G--~---yd----------F~--G~~dl~~fl~la~~~GL~VilR~ 117 (809)
..|.-+|++|+|+|+. .||=+..|.. .| . || |. +..++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 5653322221 11 0 22 23 56799999999999999999874
No 119
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=57.45 E-value=35 Score=28.47 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
|-.-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788899999999999999843 333 58877766 5778999999999988754
No 120
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=54.84 E-value=26 Score=43.96 Aligned_cols=64 Identities=19% Similarity=0.098 Sum_probs=46.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCC----CCCCC-----ceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNG----HEPSP-----GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-yvfWn~----hEp~~-----G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (809)
+-+-+.+.|.-++++|+++|.. .+|=+. |--.. =.-.|.+..||.+|++.|+++||.||+-+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5567899999999999999976 343111 11000 0123457889999999999999999988654
No 121
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=53.54 E-value=27 Score=38.62 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=39.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccC---CCCCCCCc--------eeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFW---NGHEPSPG--------HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfW---n~hEp~~G--------~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.+..-..+++.+|..|+|++-.=+== ++-=|... .=.| .|+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 45556789999999999998641110 00001111 1113 399999999999999999996
No 122
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=51.84 E-value=35 Score=38.53 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCCCCccccccccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCC
Q 003585 245 KPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYG 324 (809)
Q Consensus 245 ~p~~P~~~tE~w~Gwf~~wG~~~~~r~~ed~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G 324 (809)
..++|.+++|..+| -..|+.......++.+....-.-++.|+..+.|+=+ ..--+|.=.. ..|.|+-+|
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg 354 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDG 354 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccC
Confidence 57899999999999 666766555555666666666678999998887755 3333442211 135688889
Q ss_pred -CCCchhHHHHHHHHHHHHh
Q 003585 325 -LMRQPKYGHLKQLHEAIKL 343 (809)
Q Consensus 325 -~~~~pKy~~lr~l~~~i~~ 343 (809)
.+ +++|.+++++.+.|+.
T Consensus 355 ~~~-~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 355 REP-TRRYREVAQLGRELKK 373 (374)
T ss_dssp --B--HHHHHHHHHHHHHHT
T ss_pred CCC-CcHHHHHHHHHHHHhc
Confidence 55 7999999999887763
No 123
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=51.78 E-value=50 Score=36.99 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=53.1
Q ss_pred cCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC------CC-----------cee
Q 003585 33 RKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SP-----------GHY 91 (809)
Q Consensus 33 ~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvf----Wn~hEp------~~-----------G~y 91 (809)
-|+|+||=-| || .+.+...+.|+.|...++|+...++- |.+.-+ .. |.|
T Consensus 3 ~RG~mlD~aR--------~f--~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HF--FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CC--cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 4667776544 33 28899999999999999999998874 544321 12 233
Q ss_pred eecccchHHHHHHHHHHcCCEEEEcc
Q 003585 92 NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 92 dF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
. ..|+.++++.|++.|+.||-.+
T Consensus 73 T---~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 T---QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred C---HHHHHHHHHHHHHcCCEEEEec
Confidence 3 3599999999999999999665
No 124
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=49.22 E-value=36 Score=45.90 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=47.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce---e----------eecccchHHHHHHHHHHcCCEEEEccCc
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH---Y----------NFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~---y----------dF~G~~dl~~fl~la~~~GL~VilR~GP 119 (809)
-+-+-|.+.|.-+|++|+|+|-.-=++ +..+|. | .|.+..||.+|++.|+++||.|||-.=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 367789999999999999999873222 222221 2 2457789999999999999999987655
No 125
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.64 E-value=1.7e+02 Score=32.79 Aligned_cols=74 Identities=11% Similarity=0.180 Sum_probs=55.2
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccc--hH--HHHHHHHHHcCCEEEEccCcccc
Q 003585 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY--DL--VRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 50 iHy~R~---~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~--dl--~~fl~la~~~GL~VilR~GPyic 122 (809)
+|..|. +.+..++.++++++.||..=...+=+..+. ..+.|+|...+ |. .++++..++.|++|++-+=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 677889999999999987655444333333 24677776543 77 99999999999999999999998
Q ss_pred cc
Q 003585 123 AE 124 (809)
Q Consensus 123 aE 124 (809)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 54
No 126
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=48.46 E-value=38 Score=42.81 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=47.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEc-ccCCCCCCCCce---e---e-------ecccchHHHHHHHHHHcCCEEEEccCcc
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTY-VFWNGHEPSPGH---Y---N-------FEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~ty-vfWn~hEp~~G~---y---d-------F~G~~dl~~fl~la~~~GL~VilR~GPy 120 (809)
.+-+-+.++|.-+|++|+|+|-.- +| +..+|. | | |.+..++.+|++.|+++||.|||-+=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 456679999999999999999863 33 112221 1 2 4467899999999999999999887554
Q ss_pred cc
Q 003585 121 VC 122 (809)
Q Consensus 121 ic 122 (809)
=+
T Consensus 93 H~ 94 (879)
T PRK14511 93 HM 94 (879)
T ss_pred cc
Confidence 33
No 127
>PRK03705 glycogen debranching enzyme; Provisional
Probab=48.44 E-value=28 Score=42.77 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=36.7
Q ss_pred HHHHHHHCCCCEEEE-cccCCCCCCCC---c-----eee----------ecc-----cchHHHHHHHHHHcCCEEEEcc
Q 003585 63 LIRKAKDGGLDVIDT-YVFWNGHEPSP---G-----HYN----------FEG-----SYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 63 ~l~k~Ka~GlNtI~t-yvfWn~hEp~~---G-----~yd----------F~G-----~~dl~~fl~la~~~GL~VilR~ 117 (809)
.|.-+|++|+|+|+. .||=...++.. | -|| |.. ..+|.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 45421111110 1 011 222 1479999999999999999874
No 128
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=47.75 E-value=1.4e+02 Score=33.23 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=86.0
Q ss_pred eeEEEecCcEEECCEEeEEEEEEecCCCCCHh---HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHH
Q 003585 27 STVTYDRKAILINGQRRILISGSIHYPRSTPE---MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFI 103 (809)
Q Consensus 27 ~~v~~d~~~f~idGk~~~l~sG~iHy~R~~~~---~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl 103 (809)
..||+-+..+.+|. .=+.++.-+-+-...+ .-...+...++.|.+||-.--.=+ =-||..+..
T Consensus 16 lGvTl~HEHl~~~~--~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~~------------~GRdv~~m~ 81 (316)
T COG1735 16 LGVTLMHEHLFIDP--YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNIG------------IGRDVLKMR 81 (316)
T ss_pred ccceeehhhhccch--HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCccc------------cCcCHHHHH
Confidence 45677777777775 1111221111222111 123356666778999886521111 126999999
Q ss_pred HHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccc
Q 003585 104 KTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE 183 (809)
Q Consensus 104 ~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIE 183 (809)
+.+++.||.++...|+|.-+.|+ .|+...| ++.+...+++.++. .+ .|+=|..=|=
T Consensus 82 ~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-Gi----~gT~ikAGiI 137 (316)
T COG1735 82 RVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-GI----AGTGIKAGII 137 (316)
T ss_pred HHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-cc----cCCcccccee
Confidence 99999999999999999988885 6766433 45666666666652 11 1232322222
Q ss_pred cccCCCcccCCcchHHHHHHHHHHHHc-CCCCcceEeeCC
Q 003585 184 NEYGPESKSLGAAGHAYVNWAAKMAVG-LDTGVPWVMCKE 222 (809)
Q Consensus 184 NEyg~~~~~~~~~~~~y~~~l~~~~~~-~g~~vP~~~~~~ 222 (809)
-|-|.+.. +. +.=.+.|+..|+. ..+++|+.+-.+
T Consensus 138 k~~~~~~~-iT---p~Eek~lrAaA~A~~~Tg~Pi~tHt~ 173 (316)
T COG1735 138 KEAGGSPA-IT---PLEEKSLRAAARAHKETGAPISTHTP 173 (316)
T ss_pred eeccCccc-CC---HHHHHHHHHHHHHhhhcCCCeEEecc
Confidence 45554321 22 2223444444443 256889876554
No 129
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=47.63 E-value=67 Score=35.20 Aligned_cols=108 Identities=15% Similarity=0.227 Sum_probs=67.6
Q ss_pred EEEEEEecCCCC---CHhHH-HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCc
Q 003585 44 ILISGSIHYPRS---TPEMW-EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 44 ~l~sG~iHy~R~---~~~~W-~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GP 119 (809)
+-+++..|+..- +.... -++|++--++|.+-+-|-.| ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 457777777542 22222 23444434699999999444 3333 7789999999997765555555
Q ss_pred ccc---------cccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 120 YVC---------AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 120 yic---------aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
..+ +||..--+|.||.+.=. ....+++...+.--++..++++.++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 433 67887778999976210 0122334555666677777777776
No 130
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=46.18 E-value=37 Score=33.07 Aligned_cols=57 Identities=28% Similarity=0.455 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHcCCEEEEccCcccccccC-CCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCC
Q 003585 97 YDLVRFIKTVQRVGLYAHLRIGPYVCAEWN-FGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGG 175 (809)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~GPyicaEw~-~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gG 175 (809)
.||..||++|++.|+.|++=+-| |++.|. +-|+| ++.-++++++|-.+++ ++|-
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~------~~gf 90 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLK------SQGF 90 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHH------TTT-
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHH------HCCC
Confidence 39999999999999998866644 566663 22221 2556778899988888 4455
Q ss_pred ceE
Q 003585 176 PII 178 (809)
Q Consensus 176 pII 178 (809)
.|+
T Consensus 91 ~v~ 93 (130)
T PF04914_consen 91 NVA 93 (130)
T ss_dssp -EE
T ss_pred EEE
Confidence 665
No 131
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.47 E-value=89 Score=33.29 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=47.5
Q ss_pred Cceeeec-ccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHc
Q 003585 88 PGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (809)
Q Consensus 88 ~G~ydF~-G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (809)
.|...+. +..++..+++.|++.|++|++.+| .|..+.+-. + ..|+ +.-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~~~-~---------~~~~---~~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEFTA-A---------LNDP---AKRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcchh-h---------hcCH---HHHHHHHHHHHHHHHH
Confidence 4666664 345788999999999999999986 122211100 1 1233 2345788899999986
Q ss_pred cccccccCCceEEeccccccCC
Q 003585 167 EKLFASQGGPIILSQIENEYGP 188 (809)
Q Consensus 167 ~~l~~~~gGpII~~QIENEyg~ 188 (809)
+++ =++.|+=|+..
T Consensus 98 ~~~--------DGIdiDwE~~~ 111 (253)
T cd06545 98 YNL--------DGIDVDLEGPD 111 (253)
T ss_pred hCC--------CceeEEeeccC
Confidence 543 24566777754
No 132
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=45.47 E-value=59 Score=27.15 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=33.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 60 WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 60 W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
.++.++++|+.|++.|-. .-|.. +. ...+|.+++++.||.||.
T Consensus 17 ~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEE
Confidence 568899999999999987 44432 22 456888999999998764
No 133
>PLN00196 alpha-amylase; Provisional
Probab=45.41 E-value=44 Score=38.88 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCC--CCCCCce-eee-----cccchHHHHHHHHHHcCCEEEEccCc
Q 003585 61 EDLIRKAKDGGLDVIDTY-VFWNG--HEPSPGH-YNF-----EGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~ty-vfWn~--hEp~~G~-ydF-----~G~~dl~~fl~la~~~GL~VilR~GP 119 (809)
.+.|.-+|++|+++|-.- ++-+. |--.+.. |+. ....+|.++++.|++.||.||+-.=+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~ 114 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVI 114 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 467778899999999874 44322 2222221 333 33469999999999999999987633
No 134
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=45.18 E-value=38 Score=30.21 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=25.1
Q ss_pred ccCCceEEeccccc-cCCCcccC----Cc-chHHHHHHHHHH---HHcCCCCcceEe
Q 003585 172 SQGGPIILSQIENE-YGPESKSL----GA-AGHAYVNWAAKM---AVGLDTGVPWVM 219 (809)
Q Consensus 172 ~~gGpII~~QIENE-yg~~~~~~----~~-~~~~y~~~l~~~---~~~~g~~vP~~~ 219 (809)
++...|.+|+|-|| -++....+ +. ....|.+||+++ +|+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34468999999999 55221111 11 234555555555 556788888744
No 135
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=44.97 E-value=63 Score=35.61 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=47.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC----------------CCceeeecccchHHHHHHHHHHcCCEEE
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP----------------SPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvf----Wn~hEp----------------~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (809)
.+.+...+.|+.|...++|++..++- |.+--+ ..|.|.-+ |+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 37889999999999999999999877 754311 12344444 99999999999999998
Q ss_pred Ecc
Q 003585 115 LRI 117 (809)
Q Consensus 115 lR~ 117 (809)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 654
No 136
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=43.92 E-value=50 Score=36.68 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=48.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeecccc--hHHHHHHHHHHcCCEEEEccCccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSY--DLVRFIKTVQRVGLYAHLRIGPYV 121 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G--~ydF~G~~--dl~~fl~la~~~GL~VilR~GPyi 121 (809)
..+.-.+.++++++.||-.=...+=|.... ..+ .|+|+-.+ |..+||+..+++|++|++-+=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 667778999999999876644444444333 344 77776543 899999999999999998776666
No 137
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=43.59 E-value=2.5e+02 Score=31.62 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=27.8
Q ss_pred ecCcEEECCEEeEEEEEEecCCCCCHhHHHHHH-HHHHHCCCCEEEE
Q 003585 32 DRKAILINGQRRILISGSIHYPRSTPEMWEDLI-RKAKDGGLDVIDT 77 (809)
Q Consensus 32 d~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l-~k~Ka~GlNtI~t 77 (809)
|.+.+.|||||+++|=..-.-+ ....+-+.+ +.+|++|+.-|-.
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~p--d~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDIP--DIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECccccc--CHHHHHHHHHHHHHHcCCCceEE
Confidence 7799999999999874432221 122222233 5678899985554
No 138
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=43.30 E-value=1.4e+02 Score=33.05 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=47.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCCC-CCC--CceeeecccchHHHHHHHHHHcCCEEEEccCccccccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVF----WNGH-EPS--PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEW 125 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvf----Wn~h-Ep~--~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw 125 (809)
+.+.-.+.|+.|...|+|++..|+- +.-+ |.. +|.|.= .|+.++++.|++.|+.||-.+=-.-+.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~~ 88 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLEF 88 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHHH
Confidence 5678889999999999999998653 3222 111 344433 49999999999999999966533334443
No 139
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=42.74 E-value=43 Score=37.80 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=67.1
Q ss_pred EEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHH
Q 003585 74 VIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAM 153 (809)
Q Consensus 74 tI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~ 153 (809)
-|.+.|+|+++--+. -=...|+.|+++|+.|+--+ .-||+ +-+.|+.. + +. +++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~-~~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LK-KDE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hc-cCc---ccc
Confidence 377888999853221 00267999999999997432 34666 33456543 1 11 111 224
Q ss_pred HHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcC--CCCcceEe
Q 003585 154 QGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGL--DTGVPWVM 219 (809)
Q Consensus 154 ~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~--g~~vP~~~ 219 (809)
.++.++|+++.+.+.+ .| +.+-+|+..+... ..+.-.++++.|++.+++. +..|-|+.
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 5788899999985543 23 6777888873110 1123455667777777654 23344553
No 140
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=42.65 E-value=33 Score=37.29 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=38.6
Q ss_pred CCCccEEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEE
Q 003585 467 RDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSA 517 (809)
Q Consensus 467 ~d~sgYlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~ 517 (809)
+|-.|..||+-++.+..+.. ...+....|++.+++-.|.|+|||.-+=..
T Consensus 84 rdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h 133 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEH 133 (297)
T ss_pred ccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeeccc
Confidence 56789999999998876542 223445689999999999999999765443
No 141
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=42.26 E-value=31 Score=34.82 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=19.1
Q ss_pred EEeeCCCceEEEEECCeeeeee
Q 003585 639 ALDLRSMGKGQVWINGQSIGRY 660 (809)
Q Consensus 639 ~Ldl~g~gKG~vwVNG~niGRY 660 (809)
.|..++.|+=++||||+.+|+-
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~ 28 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDG 28 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCC
Confidence 5677788999999999999975
No 142
>PLN03059 beta-galactosidase; Provisional
Probab=41.93 E-value=45 Score=41.89 Aligned_cols=40 Identities=28% Similarity=0.627 Sum_probs=29.8
Q ss_pred EEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEE
Q 003585 472 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAF 518 (809)
Q Consensus 472 YlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~ 518 (809)
..||+++|+++..+ ....|.+.+.+-- +|||||+-+|.-.
T Consensus 620 ~twYK~~Fd~p~g~------Dpv~LDm~gmGKG-~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGGN------DPLALDMSSMGKG-QIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCCC------CCEEEecccCCCe-eEEECCccccccc
Confidence 89999999875422 1146777776654 7999999999876
No 143
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=41.58 E-value=47 Score=43.13 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHcCCEEEEcc
Q 003585 97 YDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~ 117 (809)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999885
No 144
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=41.42 E-value=82 Score=38.35 Aligned_cols=110 Identities=12% Similarity=0.142 Sum_probs=75.5
Q ss_pred EEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcc
Q 003585 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (809)
Q Consensus 41 k~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPy 120 (809)
++-+.+++..|+.+.+.+.=-++|++-.++|.+-+-|-.|++. + .+.+|++.+++.++.+|.-+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557889999877666655556677777899999999666544 2 77888888887788888887773
Q ss_pred --------cccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 121 --------VCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 121 --------icaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+..+|..-=+|.|+.+.=. ... +...++++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~-~~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR-AVE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH-hcC-CchHHHHHHHHHHHHHHHHHH
Confidence 3334655667998876210 011 334566777777777777666
No 145
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=40.52 E-value=60 Score=33.23 Aligned_cols=89 Identities=16% Similarity=0.334 Sum_probs=55.3
Q ss_pred EEEEecCCCC-----CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceee--ecc-cchHHHHHHHHHHcCCEEEEcc
Q 003585 46 ISGSIHYPRS-----TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYN--FEG-SYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 46 ~sG~iHy~R~-----~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~yd--F~G-~~dl~~fl~la~~~GL~VilR~ 117 (809)
.-|.+||+|. +.++.+.-++.+|..+++- ...|--.|..++.+. .+- ...+.+|+++++++|..+++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 3489999864 3666777888888765432 111223333333322 111 1467899999999999999998
Q ss_pred Ccccc----ccc---CCCCCCeEeccc
Q 003585 118 GPYVC----AEW---NFGGFPVWLKYV 137 (809)
Q Consensus 118 GPyic----aEw---~~GG~P~WL~~~ 137 (809)
+++-- +.. ++..+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 88521 111 146789999864
No 146
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=39.88 E-value=65 Score=39.43 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=56.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-----C--CCCCCCCceeeec---------ccchHHHHHHHHHHcCCEEEEccC
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-YVF-----W--NGHEPSPGHYNFE---------GSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-yvf-----W--n~hEp~~G~ydF~---------G~~dl~~fl~la~~~GL~VilR~G 118 (809)
.+.+|+ .++++|+++|-+ .++ | .+-.-..|-||-+ ...|++++++.|+++||.||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 677786 678899999986 232 3 2223335667633 336999999999999999997543
Q ss_pred --------cccccccCCCCCCeEec
Q 003585 119 --------PYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 119 --------PyicaEw~~GG~P~WL~ 135 (809)
||.-||.+.+-+|.|.+
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 38889999999999884
No 147
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.72 E-value=69 Score=35.53 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=48.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-----CCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-----~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
..+...+.++++|+.||-+=...+-+..+.. .-|.|+|+-. -|..++++..+++|++|++-.=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5777899999999999865444443222321 2356776543 38999999999999999998877764
No 148
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=39.68 E-value=2.2e+02 Score=30.00 Aligned_cols=49 Identities=22% Similarity=0.372 Sum_probs=33.6
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003585 53 PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (809)
Q Consensus 53 ~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (809)
++.+++ .++.||++|+|++.+- . =| .||| |..-|.+.++.++++|+..+
T Consensus 59 f~~~~~----~~~~l~~~G~d~~~la--N-NH-----~fD~-G~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 59 FRAPPE----NAAALKAAGFDVVSLA--N-NH-----SLDY-GEEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred ecCCHH----HHHHHHHhCCCEEEec--c-Cc-----cccc-chHHHHHHHHHHHHCCCCEe
Confidence 456665 4779999999999871 1 23 3444 33457788888888888654
No 149
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=39.25 E-value=82 Score=34.84 Aligned_cols=88 Identities=18% Similarity=0.316 Sum_probs=58.2
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcC--CEEEEccCc--------ccccccCCCCCCe
Q 003585 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGP--------YVCAEWNFGGFPV 132 (809)
Q Consensus 63 ~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~VilR~GP--------yicaEw~~GG~P~ 132 (809)
.|++-.++|.+.+-|-.| ||.+ .+.+|++.|++.| +-|+.-+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 566666799999998433 3434 7889999999999 445655555 34 6778888999
Q ss_pred EecccCCeEeecCC-hhhHHHHHHHHHHHHHHHHc
Q 003585 133 WLKYVPGISFRTDN-GPFKVAMQGFTQKIVQMMKN 166 (809)
Q Consensus 133 WL~~~p~i~~Rt~~-~~y~~~~~~~~~~i~~~i~~ 166 (809)
||.+.=. +. .+| +..+++--++..++++.+.+
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9976211 01 133 33555566677777776663
No 150
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=38.29 E-value=5.8e+02 Score=29.36 Aligned_cols=86 Identities=12% Similarity=0.191 Sum_probs=52.2
Q ss_pred HHHcCCEEEEccCcccccccCCCCCCeEecccCCe------Eeec-CChhhHHHHHHHHHHHHHHHHccccccccCCceE
Q 003585 106 VQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGI------SFRT-DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (809)
Q Consensus 106 a~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~i------~~Rt-~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII 178 (809)
+-..|+.|+.-| |+ .|+|+...-++ ++|- ..+.|-++..+|+ ..++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv----~~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFV----LEMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHH----HHHH------hCCCcee
Confidence 667899999987 76 79999863321 2332 2344444444433 3344 4677998
Q ss_pred EeccccccCCCcccCCc---chHHHHHHHHHHHHcCC
Q 003585 179 LSQIENEYGPESKSLGA---AGHAYVNWAAKMAVGLD 212 (809)
Q Consensus 179 ~~QIENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 212 (809)
+..|.||..... .|+. ...+.++.+++.+....
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 999999976432 2332 24556666777666554
No 151
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=38.15 E-value=68 Score=35.92 Aligned_cols=68 Identities=6% Similarity=0.024 Sum_probs=50.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAE 124 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyicaE 124 (809)
+.+.-++.++++++.||..=...+-+.+ ....+.|+|+-. -|..+|++..++.|++|++-.=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 6777889999999999865544433222 234566777643 2899999999999999999988888743
No 152
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.04 E-value=1.1e+02 Score=33.66 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=71.2
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec---ccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCC
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE---GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFP 131 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~---G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P 131 (809)
.+-+...+-+.-+.++|+.-|-.=.-|...+ ....+||+ ...||.++++-|++.|..|+|.. -|..||-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhh
Confidence 4778888999999999999998877787722 23466775 34799999999999998888773 23332211
Q ss_pred eEecc-------------cCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceE
Q 003585 132 VWLKY-------------VPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII 178 (809)
Q Consensus 132 ~WL~~-------------~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII 178 (809)
.=|.+ +.++++=--+. --+.+-+|+.+|++.-++++|+..=+|++.
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 11111 23333211111 125677899999999999998877777665
No 153
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=37.67 E-value=63 Score=36.15 Aligned_cols=119 Identities=20% Similarity=0.394 Sum_probs=73.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCcccccccCCCCCCeEe
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWL 134 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPyicaEw~~GG~P~WL 134 (809)
....|+.--.-.+.+|+-+|.+|-+|+..+-. .|+..||.-.+.+--+.| +.. .||-=..|=
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh---aCAhNPTGm----- 193 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH---ACAHNPTGM----- 193 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee---ccccCCCCC-----
Confidence 34459999999999999999999999985433 377799998888765533 332 255443332
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCC
Q 003585 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTG 214 (809)
Q Consensus 135 ~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 214 (809)
+| .++=+..|++.||+..|+ |.. +=-|..+ +.|. .+-=.|.....++.|
T Consensus 194 --DP--------------T~EQW~qia~vik~k~lf-----~fF----DiAYQGf--ASGD--~~~DawAiR~fV~~g-- 242 (410)
T KOG1412|consen 194 --DP--------------TREQWKQIADVIKSKNLF-----PFF----DIAYQGF--ASGD--LDADAWAIRYFVEQG-- 242 (410)
T ss_pred --CC--------------CHHHHHHHHHHHHhcCce-----eee----ehhhccc--ccCC--ccccHHHHHHHHhcC--
Confidence 12 233345678888866553 221 1122221 1222 222357777888877
Q ss_pred cceEeeCC
Q 003585 215 VPWVMCKE 222 (809)
Q Consensus 215 vP~~~~~~ 222 (809)
.+++.|+.
T Consensus 243 ~e~fv~QS 250 (410)
T KOG1412|consen 243 FELFVCQS 250 (410)
T ss_pred CeEEEEhh
Confidence 46788874
No 154
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.03 E-value=53 Score=35.00 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCC----ceeeecccchHHHHHHHHHHcCCEEEEcc-Ccc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP----GHYNFEGSYDLVRFIKTVQRVGLYAHLRI-GPY 120 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~----G~ydF~G~~dl~~fl~la~~~GL~VilR~-GPy 120 (809)
+.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+ +|+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 35667889999999999966 32232211 111111 1368889999999999999997 444
No 155
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=35.12 E-value=2.2e+02 Score=27.86 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=65.7
Q ss_pred ceeeecccch-HHHHHHHHHHc-CCEEEEccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHc
Q 003585 89 GHYNFEGSYD-LVRFIKTVQRV-GLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (809)
Q Consensus 89 G~ydF~G~~d-l~~fl~la~~~-GL~VilR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (809)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +-...||.+.++= ++=+|.-+.. ....+.+.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~---l~~~i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHK---LLDTIVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHH---HHHHHHHHHH-
Confidence 5566665544 77888888554 5778888556454444 4556799987641 3445544443 3334455555
Q ss_pred cccccccCCceEEec------cccccCCCcccCCcchHHHHHHHHHHHHcCCCC
Q 003585 167 EKLFASQGGPIILSQ------IENEYGPESKSLGAAGHAYVNWAAKMAVGLDTG 214 (809)
Q Consensus 167 ~~l~~~~gGpII~~Q------IENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~ 214 (809)
.+++.||.+. +||.+- .--.++..|++.+...+-.
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~~~ 113 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNNGT 113 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccCCE
Confidence 3355688887 667664 3457899999998655443
No 156
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=35.11 E-value=69 Score=33.62 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 64 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
..++|++|++.+-. +|-|.+ |.-+ |+.+=++.|.++||.+|+++
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 34699999988887 777766 5444 69999999999999999987
No 157
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.75 E-value=2e+02 Score=32.52 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=52.0
Q ss_pred cCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCCCC-----------------------
Q 003585 33 RKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHE----------------------- 85 (809)
Q Consensus 33 ~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvf----Wn~hE----------------------- 85 (809)
-|+|+||=-| || .+.+...+.|+.|...++|+...++- |.+--
T Consensus 3 ~RG~mLD~aR--------~f--~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~ 72 (357)
T cd06563 3 WRGLMLDVSR--------HF--FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQG 72 (357)
T ss_pred ccceeeeccc--------cC--cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCccccccccc
Confidence 3566666443 44 36899999999999999999998763 32211
Q ss_pred -----CCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 86 -----PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 86 -----p~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+..|.|.- .|+.++++.|++.|+.||-.+
T Consensus 73 ~~~~~~~~~~YT~---~di~eiv~yA~~rgI~VIPEI 106 (357)
T cd06563 73 GGDGTPYGGFYTQ---EEIREIVAYAAERGITVIPEI 106 (357)
T ss_pred ccCCCccCceECH---HHHHHHHHHHHHcCCEEEEec
Confidence 11244443 499999999999999999665
No 158
>PRK09875 putative hydrolase; Provisional
Probab=34.63 E-value=3.1e+02 Score=30.34 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=59.2
Q ss_pred eEEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHH
Q 003585 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (809)
Q Consensus 28 ~v~~d~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 107 (809)
.+|+-+..++++..++. +......-..+.=...|+.+|+.|.+||---.... -.+|...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g------------~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY------------MGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEecCCCc------------cCcCHHHHHHHHH
Confidence 56777777777764322 11222122445556678889999999884322211 2369999999999
Q ss_pred HcCCEEEEccCcccccccCCCCCCeEecc
Q 003585 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKY 136 (809)
Q Consensus 108 ~~GL~VilR~GPyicaEw~~GG~P~WL~~ 136 (809)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885332 5777763
No 159
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=34.32 E-value=2.1e+02 Score=32.22 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=55.2
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 50 iHy~R~---~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
+|..|. +.+..++.++++++.+|-.=..++=|.++. .-+.|.|... -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 778889999999999986555555555543 3467777654 38899999999999999988888887
No 160
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=34.20 E-value=84 Score=34.88 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=51.6
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 50 iHy~R~---~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
+|..|. ..+..++.++++++.+|-.=...+-+.... ..+.|+|+.. -|..+|++..+++|++|++-.=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344554 677789999999999986544433322222 3466777643 38999999999999999988877775
No 161
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=33.27 E-value=40 Score=38.05 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=46.1
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 49 ~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+-++ |.+...=....+.+|++|.++|-+.|+|.-.++.+ -+-.-..+|.++.+.|++.||-+++.+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3444 55444433347889999999999999999653420 001122489999999999999998864
No 162
>PRK09267 flavodoxin FldA; Validated
Probab=33.21 E-value=2.9e+02 Score=27.32 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=48.8
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003585 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (809)
Q Consensus 38 idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (809)
++.-..++++...|+...++..|.+-+.+++...++.....+|= ......-.-.| ..-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 44556789999999878778889988888877777777777773 22111100011 1235667777888897655
No 163
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.20 E-value=1.2e+02 Score=33.79 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCC---CCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEP---SPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp---~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
.+.-.+.++++++.||-+=...+-+....- ....|+|.-. -|..++++..+++|++|++-+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 566788999999999866554443222211 1234666432 38999999999999999998878774
No 164
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=32.84 E-value=1.2e+02 Score=35.21 Aligned_cols=95 Identities=18% Similarity=0.321 Sum_probs=60.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCCCCC----CCceeee-----ccc-----chHHHHHHHHH-HcCCEEEEccCc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-YVFWNGHEP----SPGHYNF-----EGS-----YDLVRFIKTVQ-RVGLYAHLRIGP 119 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-yvfWn~hEp----~~G~ydF-----~G~-----~dl~~fl~la~-~~GL~VilR~GP 119 (809)
+-+.|+++|+.++++|.|+|.. .+---...- ...|..| +.. .|+.+|++.++ ++||.++.-+
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 5568999999999999999974 111100000 0112222 111 49999999985 7999987654
Q ss_pred ccccccCCCCC-CeEecccCCeEeecCChhhHHHHHHH
Q 003585 120 YVCAEWNFGGF-PVWLKYVPGISFRTDNGPFKVAMQGF 156 (809)
Q Consensus 120 yicaEw~~GG~-P~WL~~~p~i~~Rt~~~~y~~~~~~~ 156 (809)
=|+.-.. =.||.++|+.-.-..+.|+++..-..
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~eL 131 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPAYEL 131 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhHHHH
Confidence 1555443 46999999865555666777654433
No 165
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=32.82 E-value=2.1e+02 Score=33.01 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEecccCC--------eEeecCChhhHHHHHHHH
Q 003585 86 PSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPG--------ISFRTDNGPFKVAMQGFT 157 (809)
Q Consensus 86 p~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~~~p~--------i~~Rt~~~~y~~~~~~~~ 157 (809)
+..|.|||+.+..=+.|++.|++.|...++-. .=-.|.|+...-. ..+| +...++...|+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~~~g~~~~~~NLk---~d~y~~FA~YL 160 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGSASGGDDGSDNLK---PDNYDAFADYL 160 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS----TT-HHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCCCCCCCccccccC---hhHHHHHHHHH
Confidence 46789999987777889999999999977653 1126788875221 1122 34456666777
Q ss_pred HHHHHHHHccccccccCCceEEeccccccCCCccc--------CC-cchHHHHHHHHHHHHcCCCCcceEeeC
Q 003585 158 QKIVQMMKNEKLFASQGGPIILSQIENEYGPESKS--------LG-AAGHAYVNWAAKMAVGLDTGVPWVMCK 221 (809)
Q Consensus 158 ~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~--------~~-~~~~~y~~~l~~~~~~~g~~vP~~~~~ 221 (809)
..++++++++.+ +|=-+--=||...- +. +. +...+.++.|...+++.|+..-+..|+
T Consensus 161 a~Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 161 ADVVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 777777764433 44444555887532 11 11 134567888888888889887655555
No 166
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.49 E-value=1.1e+02 Score=33.64 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=43.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCC--CCc--eeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP--SPG--HYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp--~~G--~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++ .++- ..+.+.+++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4888999999999999999999875422111 112 2332 378899999999999887763
No 167
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=32.36 E-value=1.6e+02 Score=30.92 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=65.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec-ccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEe
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE-GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~-G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL 134 (809)
.+.+++..++.++++|+..+-+|..... ....|..+ |..|-..-+++|+++|+ - -|-|.++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p-----------~gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----P-----------PGTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----C-----------CCCEEEE
Confidence 5788999999999999999999988766 23334443 77899999999999998 2 2344455
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHHcc
Q 003585 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNE 167 (809)
Q Consensus 135 ~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~ 167 (809)
.-+.+. .+..+...+..|++.+.+.|+..
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 432221 23347788899999999988843
No 168
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=32.20 E-value=1.7e+02 Score=27.55 Aligned_cols=70 Identities=16% Similarity=0.323 Sum_probs=41.9
Q ss_pred EEEEEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEcccc-----CceeEEeecccccCC-CCeEEEEE
Q 003585 472 YLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRE-----NRRFTFSGPANLRAG-INKIALLS 545 (809)
Q Consensus 472 YlwY~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~-----~~~~~~~~~i~l~~G-~n~L~lLv 545 (809)
.+-++..|..+.++.+ .+.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|+.
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 4567888877665531 34444 6778999999999987765322 001222334556655 67787765
Q ss_pred ecCC
Q 003585 546 IAVG 549 (809)
Q Consensus 546 en~G 549 (809)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 4443
No 169
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=32.03 E-value=56 Score=37.70 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=39.5
Q ss_pred HHHHHHHHCCCCEEEE-cccCC---CCCCCCcee-----eecccchHHHHHHHHHHcCCEEEEcc
Q 003585 62 DLIRKAKDGGLDVIDT-YVFWN---GHEPSPGHY-----NFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 62 ~~l~k~Ka~GlNtI~t-yvfWn---~hEp~~G~y-----dF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+.|.-+|++|+++|-+ .++=+ .|---.-.| .|.+..|+.++++.+++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6888899999999964 23311 121110000 57777899999999999999999763
No 170
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.76 E-value=68 Score=34.73 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--CCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 61 EDLIRKAKDGGLDVIDTYVFWN--GHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvfWn--~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
++.++++|++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 4678899999999987754411 111111223444 666778899999998653
No 171
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=31.67 E-value=18 Score=32.21 Aligned_cols=37 Identities=22% Similarity=0.600 Sum_probs=28.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRV 109 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~ 109 (809)
.+..|-.-+|.+-. .||.|-.|||. +|.+||++|-+-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 56789888888753 58999999999 999999999864
No 172
>PLN02877 alpha-amylase/limit dextrinase
Probab=31.38 E-value=90 Score=40.01 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCEEEEcc
Q 003585 97 YDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~ 117 (809)
.++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999875
No 173
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=31.32 E-value=8e+02 Score=27.60 Aligned_cols=239 Identities=13% Similarity=0.117 Sum_probs=104.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-------cccCCCCCCCCceeeecccch-HHHHHHHHHHcCCEEEEccCcccccccCC
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDT-------YVFWNGHEPSPGHYNFEGSYD-LVRFIKTVQRVGLYAHLRIGPYVCAEWNF 127 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~t-------yvfWn~hEp~~G~ydF~G~~d-l~~fl~la~~~GL~VilR~GPyicaEw~~ 127 (809)
.++.| ++.+|++|+.-|-. +-.|.-.-..-..-+-...+| +.+|.+.|+++||.+-+=-.| ++|.+
T Consensus 92 D~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~ 165 (346)
T PF01120_consen 92 DADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHH 165 (346)
T ss_dssp -HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCC
T ss_pred CHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcC
Confidence 44444 56789999976542 223544322211111222345 567999999999988774322 36765
Q ss_pred CCCCeEecccCCeEeecCChhhHHHHH-HHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHH
Q 003585 128 GGFPVWLKYVPGISFRTDNGPFKVAMQ-GFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAK 206 (809)
Q Consensus 128 GG~P~WL~~~p~i~~Rt~~~~y~~~~~-~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~ 206 (809)
...+.-......- .....+.+.++++ .+..+|-+.+.++++ .+|=.=..... .....-...+.+
T Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~~~~ 230 (346)
T PF01120_consen 166 PDYPPDEEGDENG-PADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAELYN 230 (346)
T ss_dssp TTTTSSCHCHHCC---HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHHHHH
T ss_pred cccCCCccCCccc-ccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHHHHH
Confidence 4443332211000 0112334445555 444555555554321 11111111110 011222356666
Q ss_pred HHHcCCCCcceEeeCCCCCCcccccCCCCCcc-CCCCCCC-CCCCccccc-cccccccccCCCCCCCCHHHHHHHHHHHH
Q 003585 207 MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYC-DAFSPNK-PYKPTLWTE-AWSGWFTEFGGAVHRRPVQDLAFAVARFI 283 (809)
Q Consensus 207 ~~~~~g~~vP~~~~~~~~~~~~vi~t~ng~~~-~~~~~~~-p~~P~~~tE-~w~Gwf~~wG~~~~~r~~ed~~~~~~~~l 283 (809)
+++++..++.+....+....... .+.+ +...+.. ...|--... .-.+||= =-.....++++++...+.+..
T Consensus 231 ~i~~~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y-~~~~~~~ks~~~li~~l~~~v 304 (346)
T PF01120_consen 231 WIRKLQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGY-NTPDEKYKSADELIDILVDSV 304 (346)
T ss_dssp HHHHHSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS--CGGGCGS--HHHHHHHHHHHH
T ss_pred HHHHhCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCcc-cCCCCCcCCHHHHHHHHHHHh
Confidence 77666665533221111100000 0001 1111110 011110000 1123332 011234568899999998999
Q ss_pred HhCCce-eeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchhHHHHHHHHHHHHhhhcc
Q 003585 284 QKGGSF-FNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYA 347 (809)
Q Consensus 284 ~~g~s~-~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~ 347 (809)
++||++ +|. +.+.+|.+..+--..||++.+.|+....+
T Consensus 305 s~ngnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~ngea 343 (346)
T PF01120_consen 305 SRNGNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGEA 343 (346)
T ss_dssp TBTEEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGGG
T ss_pred ccCceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhcccc
Confidence 999884 343 34567888777788899999988765543
No 174
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=31.26 E-value=1e+02 Score=34.40 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=50.7
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCcccc
Q 003585 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 50 iHy~R~---~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyic 122 (809)
+|..|. +.+...+.++++++.||-.=...+-+.... .-+.|+|.-. -|..+|++..+++|+++++-.=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455453 677788999999999986533333333222 3455666543 37899999999999999988877775
No 175
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=31.16 E-value=77 Score=34.26 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=34.4
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 64 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
.+++|++|++.|-. +|-|.+. .|. +.+..+.+=++.|.++||.+|+++|
T Consensus 79 ~~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII----GHSERRQ-YFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe----CcccccC-ccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 34699999998887 6555443 332 2334444555559999999999987
No 176
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.79 E-value=3.5e+02 Score=29.73 Aligned_cols=29 Identities=24% Similarity=0.475 Sum_probs=24.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCC
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP 88 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~ 88 (809)
.++.|.+..+++.+.|++.|+. |+.=|..
T Consensus 111 ~~~~~~~~a~~~~~~gad~iel----N~sCP~~ 139 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALEL----NFSCPHG 139 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE----ECCCCCC
Confidence 6788999999998889999998 7777764
No 177
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=30.66 E-value=94 Score=33.41 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=38.2
Q ss_pred HHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 64 IRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 64 l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
..++|++|++.|-. +|-|.+. -|. +.+.++.+=++.|.++||.+|+++|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~-~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII----GHSERRQ-YFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 34699999988887 6655543 222 3467899999999999999999987
No 178
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=30.62 E-value=1.2e+02 Score=33.07 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=40.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCcee--ee-cccchHHHHHHHHHHc-CCEEEEccCc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHY--NF-EGSYDLVRFIKTVQRV-GLYAHLRIGP 119 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~y--dF-~G~~dl~~fl~la~~~-GL~VilR~GP 119 (809)
.++.|.+..++++++|++.|+. |++-|..... .+ ...+.+.++++.+++. ++-|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iEl----N~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIEL----NISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 5789999999999999999999 5665543221 11 1124566777777776 6666666543
No 179
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=30.22 E-value=1.1e+02 Score=26.87 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=34.2
Q ss_pred EEEEeecCCCcccccCCCCCeeeecCcceEEEEEECCEEEEEEEccccCceeEEeecccccCCCCe-EEEEEe
Q 003585 475 YMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINK-IALLSI 546 (809)
Q Consensus 475 Y~T~i~~~~~~~~~~~g~~~~L~v~~~~d~~~VfVNg~~vGs~~~~~~~~~~~~~~~i~l~~G~n~-L~lLve 546 (809)
|+..++...+. ..+........+.|.|||..+... .....++|..|.|. |.|-|.
T Consensus 16 Y~~~V~~~~~~--------v~v~a~~~~~~a~v~vng~~~~~~---------~~~~~i~L~~G~n~~i~i~Vt 71 (88)
T PF12733_consen 16 YTVTVPNDVDS--------VTVTATPEDSGATVTVNGVPVNSG---------GYSATIPLNEGENTVITITVT 71 (88)
T ss_pred EEEEECCCceE--------EEEEEEECCCCEEEEEcCEEccCC---------CcceeeEccCCCceEEEEEEE
Confidence 66666543222 244444557779999999876432 01224567789888 888774
No 180
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.92 E-value=81 Score=33.63 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCC-ceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSP-GHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~-G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+.+++.|+.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 5578889999999999998631100001111 00110 01357788899999999999987
No 181
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=29.86 E-value=1.4e+02 Score=29.23 Aligned_cols=91 Identities=12% Similarity=0.209 Sum_probs=47.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeee-cccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEe
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF-EGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWL 134 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF-~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL 134 (809)
.+.+.+..++.++++|+..+-+|.....+. ......+ .|..|-..-++.|+++|+- -|-|.++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP---------------AGTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT-----------------SS-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC---------------CCCEEEE
Confidence 468889999999999999999998872221 1111222 2668899999999999983 2445555
Q ss_pred cccCCeEeecCChhhHHHHHHHHHHHHHHHHc
Q 003585 135 KYVPGISFRTDNGPFKVAMQGFTQKIVQMMKN 166 (809)
Q Consensus 135 ~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~ 166 (809)
--+-+ ..+..+...+..|++.+.+.|..
T Consensus 100 avD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 42222 25677778888888888888874
No 182
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.82 E-value=1.1e+02 Score=33.21 Aligned_cols=60 Identities=18% Similarity=0.355 Sum_probs=40.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCce-eee-cccchHHHHHHHHHHc-CCEEEEccCc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGH-YNF-EGSYDLVRFIKTVQRV-GLYAHLRIGP 119 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~-ydF-~G~~dl~~fl~la~~~-GL~VilR~GP 119 (809)
.++.|.+..+++++.|++.|+. |..-|.... =++ .....+.++++.+++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 6789999999999999999999 766665321 000 0112566677777765 6667777654
No 183
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=29.77 E-value=1.1e+02 Score=33.16 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=57.2
Q ss_pred EEEecCcEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeec--ccchHHHHHHH
Q 003585 29 VTYDRKAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFE--GSYDLVRFIKT 105 (809)
Q Consensus 29 v~~d~~~f~idGk~~~l~sG~iHy~R~-~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~--G~~dl~~fl~l 105 (809)
|.. ..+.+.+..++++.| +-.+ ..+.-.+..+++|+.|....+.|+|=+.-.| |.|. |..-|..+-+.
T Consensus 14 i~~--~~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~~ 84 (260)
T TIGR01361 14 VDV--GGVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRRA 84 (260)
T ss_pred EEE--CCEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHHH
Confidence 444 235566544667777 3333 5677778888999999998888888754444 4455 45678888899
Q ss_pred HHHcCCEEEEcc
Q 003585 106 VQRVGLYAHLRI 117 (809)
Q Consensus 106 a~~~GL~VilR~ 117 (809)
|++.||.++-.|
T Consensus 85 ~~~~Gl~~~t~~ 96 (260)
T TIGR01361 85 ADEHGLPVVTEV 96 (260)
T ss_pred HHHhCCCEEEee
Confidence 999999988876
No 184
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.63 E-value=62 Score=32.21 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccC-CCCCCCC--ceeeecccchHHHHHHHHHHcCCEEEEccCcc
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFW-NGHEPSP--GHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPY 120 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfW-n~hEp~~--G~ydF~G~~dl~~fl~la~~~GL~VilR~GPy 120 (809)
.+..++.++.++++|...|.+...+ +.+.... ..++.- ...|.++.+.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 5678889999999999998886552 1222211 111111 1367888889999999999998553
No 185
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=29.30 E-value=1.3e+02 Score=34.12 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.|...++++++.|++.|..+...-.-....+. .-...+++.|+++||.|+.+.
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~------~~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGK------IVPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhccccccccc------cCCHHHHHHHHHcCCEEEEEE
Confidence 48888999999999987764322221111112 123589999999999998553
No 186
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=29.30 E-value=2.8e+02 Score=31.28 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=52.4
Q ss_pred cCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEccc----CCCCCC------CCc------eeeeccc
Q 003585 33 RKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVF----WNGHEP------SPG------HYNFEGS 96 (809)
Q Consensus 33 ~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvf----Wn~hEp------~~G------~ydF~G~ 96 (809)
-|+|+||=-| || .+.+...+.|+.|-...+|+...++- |.+--+ +.| .|.-
T Consensus 3 ~RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~--- 69 (348)
T cd06562 3 HRGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP--- 69 (348)
T ss_pred ccceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---
Confidence 4566666444 44 36899999999999999999998753 544322 123 3433
Q ss_pred chHHHHHHHHHHcCCEEEEcc
Q 003585 97 YDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~ 117 (809)
.|+..+++.|++.|+.||-.+
T Consensus 70 ~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 70 EDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHHHHHcCCEEEEec
Confidence 499999999999999999664
No 187
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=28.69 E-value=85 Score=39.99 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHcCCEEEEcc
Q 003585 97 YDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 97 ~dl~~fl~la~~~GL~VilR~ 117 (809)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999875
No 188
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=28.20 E-value=63 Score=36.12 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=37.4
Q ss_pred EEEEEEec------CCCCCHhHHHHHHHHHHHC-CCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003585 44 ILISGSIH------YPRSTPEMWEDLIRKAKDG-GLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (809)
Q Consensus 44 ~l~sG~iH------y~R~~~~~W~~~l~k~Ka~-GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V 113 (809)
++.||. | +.+++.+-|++..++--.. |+|-+|-| |..-++.. ....++|++|+++|-|.
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~ 169 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYF 169 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceE
Confidence 456777 8 4556777777777777665 88888884 55544443 37889999999999888
No 189
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.37 E-value=1.2e+02 Score=35.59 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=45.9
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 50 iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
..|.+.|.+.-++.++++.+.|++.|+++..-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45667778888889999999999999998876653 258889999999999886653
No 190
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=27.36 E-value=9.2e+02 Score=28.18 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=51.0
Q ss_pred HHHHHHHHCCCCEEEEccc----CCCCCCCCceeeecccchHHHHHHHHHHcCCE--EEEccCcccccccCCCCCCeEec
Q 003585 62 DLIRKAKDGGLDVIDTYVF----WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 62 ~~l~k~Ka~GlNtI~tyvf----Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~--VilR~GPyicaEw~~GG~P~WL~ 135 (809)
..++.+.+.|+|+++.|+- |..-+..+ .++.+|.++++++||. .++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl-------------- 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL-------------- 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce--------------
Confidence 4778899999999999864 65544443 4889999999999884 233356664
Q ss_pred ccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+.+=+.|+..++...+++.+-++...
T Consensus 203 ----INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 203 ----INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22334455555554455555444444
No 191
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=27.26 E-value=1.2e+02 Score=34.92 Aligned_cols=69 Identities=13% Similarity=0.290 Sum_probs=46.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEccCccccccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRIGPYVCAEW 125 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~GPyicaEw 125 (809)
+.+...+.++.+++.|+-.=...+-..... ..+.|.|+.. -|..++++.+++.|+++++-.=|+|.-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 577788999999999986655544322222 4445565543 28999999999999999999888775544
No 192
>PRK06703 flavodoxin; Provisional
Probab=27.24 E-value=2.7e+02 Score=27.00 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=60.5
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 38 INGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 38 idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+.....++++-..+-.-.+|+.+.+-+..+++.-++.....+|-...-. |. ........+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 4444556665545533445666777787777666665556566322110 11 012355667777899999887764
Q ss_pred CcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 118 GPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 118 GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+- +++..++..-++++++|.++|++.++
T Consensus 121 ---~~-----------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LK-----------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eE-----------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 10 11112235678889999999988776
No 193
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.95 E-value=91 Score=33.08 Aligned_cols=60 Identities=13% Similarity=-0.037 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 58 EMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 58 ~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
+..++.++.+|++|..+|.+...+......+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 557888999999999999874333211111112111112456777888999999999997
No 194
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=26.95 E-value=86 Score=38.81 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=40.6
Q ss_pred HHHHHHCCCCEEEE-cccCCCCCCCC---c-----------------eeeecc-----cchHHHHHHHHHHcCCEEEEcc
Q 003585 64 IRKAKDGGLDVIDT-YVFWNGHEPSP---G-----------------HYNFEG-----SYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 64 l~k~Ka~GlNtI~t-yvfWn~hEp~~---G-----------------~ydF~G-----~~dl~~fl~la~~~GL~VilR~ 117 (809)
|.-+|++|+++|+. .|+.-..|+.. | .|--+. .+.+..+|+.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999996 67765555543 2 222233 2478889999999999999875
No 195
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.57 E-value=1.5e+02 Score=33.25 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=49.9
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcc----------cCCCCCCC---------Cceeeecc-c--chHHHHHH
Q 003585 50 IHYPRS---TPEMWEDLIRKAKDGGLDVIDTYV----------FWNGHEPS---------PGHYNFEG-S--YDLVRFIK 104 (809)
Q Consensus 50 iHy~R~---~~~~W~~~l~k~Ka~GlNtI~tyv----------fWn~hEp~---------~G~ydF~G-~--~dl~~fl~ 104 (809)
+|..|. ..+.-++.++++++.||-.=..++ .|+-..-. -+.++|.. . -|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 555563 567788999999999986555433 24422211 13344432 1 28999999
Q ss_pred HHHHcCCEEEEccCcccc
Q 003585 105 TVQRVGLYAHLRIGPYVC 122 (809)
Q Consensus 105 la~~~GL~VilR~GPyic 122 (809)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998878775
No 196
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.23 E-value=3.7e+02 Score=28.69 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=57.4
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCC-Cceeeec----ccchHHHHHHHHHHcCCEEEEccCcccccccCCC
Q 003585 54 RSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFE----GSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFG 128 (809)
Q Consensus 54 R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~-~G~ydF~----G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~G 128 (809)
...++.-+..-+.+++.|+.....- ...|.+. ++.-|=. ....+.+.|++|++.|..+|.-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~---------- 120 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMC--LSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG---------- 120 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEe--cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC----------
Confidence 3467777777888889999876541 1122211 1110000 112577889999999998764221
Q ss_pred CCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccC
Q 003585 129 GFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (809)
Q Consensus 129 G~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg 187 (809)
.+.|.. .+++...+.+.+.++.|+++.+++ | |-+.|||-.+
T Consensus 121 -~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 -YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred -cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 111211 122444455556667777777633 3 3456888643
No 197
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.13 E-value=32 Score=39.28 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCEE-EEccCcccccccCCCCC--CeEecc
Q 003585 100 VRFIKTVQRVGLYA-HLRIGPYVCAEWNFGGF--PVWLKY 136 (809)
Q Consensus 100 ~~fl~la~~~GL~V-ilR~GPyicaEw~~GG~--P~WL~~ 136 (809)
++.++.|.+.||.| |.||| ||-|....|-+ +.|+.+
T Consensus 176 E~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 176 EKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 46788899999996 79997 77777776654 666644
No 198
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.04 E-value=3.9e+02 Score=28.80 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=50.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE--EEccCcccccccCCCCCCeEecccC
Q 003585 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLRIGPYVCAEWNFGGFPVWLKYVP 138 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR~GPyicaEw~~GG~P~WL~~~p 138 (809)
.+.++.+++.|+++|+.++-. |+--....-...+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 467899999999999996532 1111111111236778888899998863 33334543
Q ss_pred CeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 139 GISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 139 ~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+.+=+.|+.-++...+.+++.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22334567777766666666555555
No 199
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=26.03 E-value=82 Score=37.87 Aligned_cols=42 Identities=12% Similarity=-0.038 Sum_probs=28.8
Q ss_pred ceEEeccccccCCCcccC---CcchHHHHHHHHHHHHcCCCCcce
Q 003585 176 PIILSQIENEYGPESKSL---GAAGHAYVNWAAKMAVGLDTGVPW 217 (809)
Q Consensus 176 pII~~QIENEyg~~~~~~---~~~~~~y~~~l~~~~~~~g~~vP~ 217 (809)
++-.-|.|+||.---... .-.+.++++.|+++.++.++.+++
T Consensus 375 ~~~f~q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~~~~~f 419 (541)
T TIGR01676 375 DCGGHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEKENIPAPA 419 (541)
T ss_pred ccccceEEEEEEEecccccccccchHHHHHHHHHHHHhcCCCCCC
Confidence 444668889996421100 015689999999999998888854
No 200
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=25.89 E-value=2.9e+02 Score=29.96 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=66.1
Q ss_pred eEEEEEEecCCC----CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE--EEc
Q 003585 43 RILISGSIHYPR----STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA--HLR 116 (809)
Q Consensus 43 ~~l~sG~iHy~R----~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V--ilR 116 (809)
.+-+++..|+.+ .+.+.=.++|++=.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+ ++-
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 467888887654 23332235566667889999999433 3334 7889999999997664 444
Q ss_pred cCccc-------ccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 117 IGPYV-------CAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 117 ~GPyi-------caEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+-|-. .++|..-.+|.|+.+.=. +...+....+++--++..++++.++
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44422 233666778988875210 0111223455566666666666666
No 201
>PRK15492 triosephosphate isomerase; Provisional
Probab=25.84 E-value=1.2e+02 Score=32.96 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=37.1
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 65 ~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
.++|++|++.|-. +|-|.+. .|. +-+..+.+=++.|.++||.+|+++|
T Consensus 88 ~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 88 LMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 4699999998887 6655554 332 3456677788899999999999987
No 202
>PLN02784 alpha-amylase
Probab=25.69 E-value=1.4e+02 Score=37.93 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=38.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCC---CCce-ee----ecccchHHHHHHHHHHcCCEEEEcc
Q 003585 61 EDLIRKAKDGGLDVIDTYVFWNGHEP---SPGH-YN----FEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvfWn~hEp---~~G~-yd----F~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.++|..++++|+++|-..=+-....+ .+.. |+ |....+|.++|+.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45677789999999987433211111 1111 22 2334799999999999999999875
No 203
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.42 E-value=1e+02 Score=33.16 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEccc-CCCCC---CCCceeee-cccchHHHHHHHHHHcCCEEEEccC
Q 003585 54 RSTPEMWEDLIRKAKDGGLDVIDTYVF-WNGHE---PSPGHYNF-EGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 54 R~~~~~W~~~l~k~Ka~GlNtI~tyvf-Wn~hE---p~~G~ydF-~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
..+.+.|++..+.+|+.|+..+.|.+- ..+.. ...-.|-- |+...=..||+.+++.|+-|||-.|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 469999999999999999999999332 11111 11111111 3444444688889999999999876
No 204
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=25.23 E-value=77 Score=35.37 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCE--EE-Ecc
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLY--AH-LRI 117 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~--Vi-lR~ 117 (809)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999999 7888888899999999986 999999999999996 33 666
No 205
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=25.22 E-value=1.3e+02 Score=31.36 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=40.5
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeee---cccchHHHHHHHHHH--cCCEEEEccCcccc
Q 003585 48 GSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNF---EGSYDLVRFIKTVQR--VGLYAHLRIGPYVC 122 (809)
Q Consensus 48 G~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF---~G~~dl~~fl~la~~--~GL~VilR~GPyic 122 (809)
|.=-+.|+..++--..-+.+|+.|+.++-.---=..|...+ |-+ .| +.=+-+.| ..-++|+||||..|
T Consensus 99 GadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSr--FlY~k~KG-----EvE~~v~eL~F~~~~i~RPG~ll~ 171 (238)
T KOG4039|consen 99 GADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSR--FLYMKMKG-----EVERDVIELDFKHIIILRPGPLLG 171 (238)
T ss_pred ccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccc--eeeeeccc-----hhhhhhhhccccEEEEecCcceec
Confidence 33334588999999999999999998775432222222222 211 12 11112222 33468999999876
Q ss_pred c
Q 003585 123 A 123 (809)
Q Consensus 123 a 123 (809)
-
T Consensus 172 ~ 172 (238)
T KOG4039|consen 172 E 172 (238)
T ss_pred c
Confidence 4
No 206
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=25.18 E-value=54 Score=34.42 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=13.8
Q ss_pred ceEEEEECCeeeeee
Q 003585 646 GKGQVWINGQSIGRY 660 (809)
Q Consensus 646 gKG~vwVNG~niGRY 660 (809)
.+|.+||||++|.|.
T Consensus 55 t~G~i~~~~~dl~~l 69 (223)
T COG2884 55 TRGKILVNGHDLSRL 69 (223)
T ss_pred CCceEEECCeecccc
Confidence 569999999999997
No 207
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=25.06 E-value=44 Score=37.16 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=40.1
Q ss_pred eEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-Ecc
Q 003585 43 RILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRI 117 (809)
Q Consensus 43 ~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~ 117 (809)
.++++-+..--+. |+.|++.|..+-+.|+|.|.- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 35 ~liiGiA~~GG~l-p~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 35 TLIIGIAPAGGRL-PPSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp EEEE---STTHCC-HCCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred EEEEecCcCCCcC-CHHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 3444444444444 478999999999999999985 666444 77799999999999877 664
No 208
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=25.05 E-value=53 Score=34.23 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=52.0
Q ss_pred EEeEEEEEEec-CCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC--------CCCc----eeeecccchHHHHHHHHH
Q 003585 41 QRRILISGSIH-YPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE--------PSPG----HYNFEGSYDLVRFIKTVQ 107 (809)
Q Consensus 41 k~~~l~sG~iH-y~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hE--------p~~G----~ydF~G~~dl~~fl~la~ 107 (809)
+-+.+.-|+-+ .-|++.|.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.+++
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 33444444444 34579999999999999998 45667787766 1222 588999999999999999
Q ss_pred HcCCEEEEccCc
Q 003585 108 RVGLYAHLRIGP 119 (809)
Q Consensus 108 ~~GL~VilR~GP 119 (809)
...+.|-.-.||
T Consensus 183 ~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 183 RADLVIGNDTGP 194 (247)
T ss_dssp TSSEEEEESSHH
T ss_pred cCCEEEecCChH
Confidence 999999888877
No 209
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.77 E-value=1.7e+02 Score=31.76 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=40.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
.|.+.=++.++++.+.|++.|+++++.|- + ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45566678999999999999999887654 1 3788999999999998775
No 210
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=24.70 E-value=2.2e+02 Score=30.00 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=70.7
Q ss_pred CHhHHHHHHHHHHHCCCCE-EEE--cccCCCCCC----CCc-eeeecc-------------cchHHHHHHHHHHcCCEEE
Q 003585 56 TPEMWEDLIRKAKDGGLDV-IDT--YVFWNGHEP----SPG-HYNFEG-------------SYDLVRFIKTVQRVGLYAH 114 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNt-I~t--yvfWn~hEp----~~G-~ydF~G-------------~~dl~~fl~la~~~GL~Vi 114 (809)
-++.-.+.++++|+.|+.+ |+| |+.|..-+. ... -+|+.+ +..+.+.|+.+.+.|..+.
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~ 131 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVI 131 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 3566778999999999864 555 333311111 111 233332 2345566777888888888
Q ss_pred EccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEecccc----------
Q 003585 115 LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN---------- 184 (809)
Q Consensus 115 lR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIEN---------- 184 (809)
+|. |. +|++ ++++.-++++.+|++.+. +. +|-+..--+
T Consensus 132 iR~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg 179 (213)
T PRK10076 132 PRL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLG 179 (213)
T ss_pred EEE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcC
Confidence 885 22 3664 355666666666655431 11 221111111
Q ss_pred -ccCCCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003585 185 -EYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (809)
Q Consensus 185 -Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (809)
+|-. .......++.++++++++++.|+.+
T Consensus 180 ~~y~~--~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 180 KTWSM--KEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CcCcc--CCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 2211 0122467889999999999988876
No 211
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.44 E-value=1.7e+02 Score=27.50 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=31.8
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE
Q 003585 55 STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH 114 (809)
Q Consensus 55 ~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi 114 (809)
.+++..++.++.+++.|+..|=.. +| ..-.+++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 489999999999999998877651 11 245689999999999876
No 212
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=24.40 E-value=1.1e+02 Score=32.89 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=32.1
Q ss_pred EECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEE
Q 003585 37 LINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVID 76 (809)
Q Consensus 37 ~idGk~~~l~sG~iHy~R~-~~~~W~~~l~k~Ka~GlNtI~ 76 (809)
.+.|+++..++|..|+..- ...+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 5679999999999996544 555557889999999997664
No 213
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=24.06 E-value=6.8e+02 Score=28.85 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=84.8
Q ss_pred ceeEEEecCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHC-CC-CEEEEcccCCCCCCCCceeeecccchHHHHH
Q 003585 26 CSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDG-GL-DVIDTYVFWNGHEPSPGHYNFEGSYDLVRFI 103 (809)
Q Consensus 26 ~~~v~~d~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~-Gl-NtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl 103 (809)
.+.|..-.-+|.--|-||..+.. ..-+| +++...+++.+++.. ++ -.|+.-++| +.. .|+.++.
T Consensus 10 ~~~~~~~~w~~~~~~tRf~~f~~-~g~~r-~~~e~~~d~~~v~~L~~~~~~v~lH~~~------d~~------~d~~~~~ 75 (378)
T TIGR02635 10 ALKIETPSWAYGNSGTRFKVFHQ-EGAAR-NVFEKIEDAALVHRLTGICPTVALHIPW------DRV------EDYEELA 75 (378)
T ss_pred hcEeeccccccCCCCcccccCCC-CCCCC-CHHHHHHHHHHHHhhcCCCCceeeccCC------ccc------cCHHHHH
Confidence 34455555566666667644322 12233 344444555555544 33 233443334 322 3677999
Q ss_pred HHHHHcCCEEE-EccCcccccccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceE-Eec
Q 003585 104 KTVQRVGLYAH-LRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPII-LSQ 181 (809)
Q Consensus 104 ~la~~~GL~Vi-lR~GPyicaEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII-~~Q 181 (809)
++++++||.|. +-|+=|-...+.. + .|-..|+..++..-+++++.+++-+ .+ |.++| .|
T Consensus 76 ~~l~~~GL~v~~i~p~~f~~~~~~~-----------G-SLt~pD~~vR~~AIe~~k~~idiA~--eL----Ga~~I~iW- 136 (378)
T TIGR02635 76 RYAEELGLKIGAINPNLFQDDDYKF-----------G-SLTHPDKRIRRKAIDHLLECVDIAK--KT----GSKDISLW- 136 (378)
T ss_pred HHHHHcCCceeeeeCCccCCcccCC-----------C-CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCeEEEe-
Confidence 99999999987 6665221111111 2 4666788888888888888777666 33 55544 44
Q ss_pred cc--cccCCCcccCCcchHHHHHHHHHHHHcCCCCcce
Q 003585 182 IE--NEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPW 217 (809)
Q Consensus 182 IE--NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~ 217 (809)
+- -+|... ..+.+.-+.+.+.|++++....-++.+
T Consensus 137 ~~DG~~~~g~-~~~~~a~~rl~esL~eI~~~~~~~v~~ 173 (378)
T TIGR02635 137 LADGTNYPGQ-DDFRSRKDRLEESLAEVYEHLGADMRL 173 (378)
T ss_pred cCCcCcCCcc-cCHHHHHHHHHHHHHHHHHhCcCCCEE
Confidence 21 222211 112222355667777777554345544
No 214
>PRK14567 triosephosphate isomerase; Provisional
Probab=23.87 E-value=1.4e+02 Score=32.44 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 65 ~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
.++|++|++.|-. .|-|.+. -|. +.+..+.+=++.|.++||.+|+++|
T Consensus 79 ~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4699999998887 6655543 332 4455677888899999999999988
No 215
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=23.75 E-value=1.3e+02 Score=34.29 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=43.1
Q ss_pred CCEEeEEEEEEecC---------------------CCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccc
Q 003585 39 NGQRRILISGSIHY---------------------PRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSY 97 (809)
Q Consensus 39 dGk~~~l~sG~iHy---------------------~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~ 97 (809)
.+++.++.|.+-|| .|+..+.-++.|++.++.|.--+ .|.=+.=...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~--~vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF--AVVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE--EEEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce--eeeccCCCccccccc-----
Confidence 55677888888888 34556666667777777776321 122234445556655
Q ss_pred hHHHHHHHHHHcCCEEEEc
Q 003585 98 DLVRFIKTVQRVGLYAHLR 116 (809)
Q Consensus 98 dl~~fl~la~~~GL~VilR 116 (809)
||.+..++|+++++|+.+-
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 8888888888887777665
No 216
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.71 E-value=2e+02 Score=32.08 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=52.5
Q ss_pred cCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcc----cCCCCC---CC---Cc----eeeecccch
Q 003585 33 RKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYV----FWNGHE---PS---PG----HYNFEGSYD 98 (809)
Q Consensus 33 ~~~f~idGk~~~l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyv----fWn~hE---p~---~G----~ydF~G~~d 98 (809)
-|+|+||=-| || .+.+...+.|+.|...++|+..-++ -|.+-- |+ .| .|. ..|
T Consensus 3 ~RG~mlD~aR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~d 69 (311)
T cd06570 3 WRGLLIDVSR--------HF--IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQ 69 (311)
T ss_pred ccCeEEecCC--------CC--cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHH
Confidence 3566666443 33 4699999999999999999999987 364421 11 22 233 349
Q ss_pred HHHHHHHHHHcCCEEEEcc
Q 003585 99 LVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 99 l~~fl~la~~~GL~VilR~ 117 (809)
+.++++.|++.|+.||-.+
T Consensus 70 i~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 70 IREVVAYARDRGIRVVPEI 88 (311)
T ss_pred HHHHHHHHHHcCCEEEEee
Confidence 9999999999999999665
No 217
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=23.62 E-value=6.1e+02 Score=28.10 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=78.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccCcccccccCCCCCCeEec
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLK 135 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~GPyicaEw~~GG~P~WL~ 135 (809)
.-+.-+-+|+.+|.-+. .|++|- +.-.-|...+.++.+.|+.|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45677889999998887 999974 123367788999999999999885 333
Q ss_pred ccCCeEeecCChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCCCCc
Q 003585 136 YVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGV 215 (809)
Q Consensus 136 ~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 215 (809)
. |-.+ .+++ .++..+. +. ..--.|..+-|.||-=+..+.-...--+|+...|..+++.|.++
T Consensus 111 d---------d~~~--~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D---------DIHD--AVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c---------chhh--hHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 2221 2222 2333333 21 11246888899999532111111245689999999999999999
Q ss_pred ceEeeCC
Q 003585 216 PWVMCKE 222 (809)
Q Consensus 216 P~~~~~~ 222 (809)
|+.+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9888665
No 218
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.37 E-value=1.4e+02 Score=36.23 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=45.0
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 50 IHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 50 iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
+=|.|.|.+.-+..++++++.|++.|+++...|.. +.+...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 55777788888889999999999999998766653 3788999999999998643
No 219
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.23 E-value=1.3e+02 Score=32.19 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCCCCCCCceee---ec-ccchHHHHHHHHHHcCCEEEEcc
Q 003585 59 MWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYN---FE-GSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 59 ~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~yd---F~-G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.+++.++.++++|.++|.+.- .+...+.-+ +. -...|.+..++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997521 111111000 10 01356678889999999999985
No 220
>PTZ00333 triosephosphate isomerase; Provisional
Probab=23.20 E-value=1.5e+02 Score=32.16 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 65 ~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
.++|++|++.|-. +|-|.+. .|. +.+.++.+=++.|.++||.+|+++|
T Consensus 83 ~mL~d~G~~~vii----GHSERR~-~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL----GHSERRQ-YFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 4699999998887 5555443 332 4567889999999999999999987
No 221
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.07 E-value=1.1e+02 Score=32.18 Aligned_cols=61 Identities=16% Similarity=0.011 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~ 117 (809)
.+.+++.|+.++++|..+|.+-..+..-++..-+..-.-...+.++.+.|++.|+.+.+.+
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3678889999999999999863222100000000000111357788889999999999987
No 222
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=23.02 E-value=2.4e+02 Score=30.36 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=61.0
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcC--CEEEEccCcccc----
Q 003585 49 SIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC---- 122 (809)
Q Consensus 49 ~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~VilR~GPyic---- 122 (809)
+.|+...+.+.=-++|++=-++|.+.+-|-.+.+. ..+.+|++.|++.| +.|++.+=|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~fd~-------------~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLFFDN-------------DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeecccccH-------------HHHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 34444433333334444445569999999444332 37889999999998 556666666432
Q ss_pred ---cccCCCCCCeEecccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 123 ---AEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 123 ---aEw~~GG~P~WL~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
++|-.-++|.|+.+.=.- ..-+....+++-.++..++++.++
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~~-~~~~~~~~~~~g~~~~~~l~~~l~ 249 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLEK-LKDDAEAVRAEGIEIAAELCDELL 249 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456666789998752100 011223345556666777777666
No 223
>PLN02540 methylenetetrahydrofolate reductase
Probab=22.51 E-value=1.7e+02 Score=35.40 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=58.9
Q ss_pred HHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcC--CEEEEccCcccc-------cccCCCCCCeE
Q 003585 63 LIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVG--LYAHLRIGPYVC-------AEWNFGGFPVW 133 (809)
Q Consensus 63 ~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~G--L~VilR~GPyic-------aEw~~GG~P~W 133 (809)
+|++=.++|.+-|-|-.| ||.+ .+.+|++.|+++| +.||.-+-|-.. ++|..--+|.|
T Consensus 161 ~Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~ 227 (565)
T PLN02540 161 YLKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAE 227 (565)
T ss_pred HHHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHH
Confidence 344444679999999443 4444 7789999999998 667777777442 44766667999
Q ss_pred ecccCCeEeecCChhhHHHHHHHHHHHHHHHH
Q 003585 134 LKYVPGISFRTDNGPFKVAMQGFTQKIVQMMK 165 (809)
Q Consensus 134 L~~~p~i~~Rt~~~~y~~~~~~~~~~i~~~i~ 165 (809)
+.+.=. ....+++..++.--++..++++.|+
T Consensus 228 i~~rLe-~~kddde~v~~~Gieia~e~~~~L~ 258 (565)
T PLN02540 228 ITAALE-PIKDNDEAVKAYGIHLGTEMCKKIL 258 (565)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 876211 1233455566666677777777776
No 224
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=22.28 E-value=1.1e+03 Score=26.71 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHcCCEEE--EccCcccccccCCCCCCeEecccC-CeEeecCChhhHHHHHHHHHHHHHHHHcccccccc
Q 003585 97 YDLVRFIKTVQRVGLYAH--LRIGPYVCAEWNFGGFPVWLKYVP-GISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQ 173 (809)
Q Consensus 97 ~dl~~fl~la~~~GL~Vi--lR~GPyicaEw~~GG~P~WL~~~p-~i~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~ 173 (809)
+.+..+...|++.||+.+ +|=.+ + ++=.-+.||+.++ ++.+|-.+..+-....+-.+.+.+.+++. ..
T Consensus 76 Nh~r~tAavA~~lGl~~v~ile~~~---~--~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~----g~ 146 (323)
T COG2515 76 NHVRQTAAVAAKLGLKCVLILENIE---A--NYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQ----GG 146 (323)
T ss_pred hHHHHHHHHHHhcCCcEEEEEeccc---c--ccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhc----CC
Confidence 467777788899999954 55322 1 3444567888754 66677655433222344455556666522 12
Q ss_pred CCceEEeccccccCCCcccCCcchHHHHHHHHHHHHcCC--CCcce-EeeCCCCCCcccccCCCCCccCCCCCCCCCCCc
Q 003585 174 GGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAVGLD--TGVPW-VMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPT 250 (809)
Q Consensus 174 gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~~~g--~~vP~-~~~~~~~~~~~vi~t~ng~~~~~~~~~~p~~P~ 250 (809)
..-||-.+=+|=+|.. | |++-+.+++.+.. ...-+ +.|.++.... -|. ...+....++.+.
T Consensus 147 kpyvIp~GG~~~~g~l----G-----yv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~------AGl-~~g~~~~~~~~~V 210 (323)
T COG2515 147 KPYVIPEGGSSPLGAL----G-----YVRLALEIAEQAEQLLKFDSVVVAPGSGGTH------AGL-LVGLAQLGPDVEV 210 (323)
T ss_pred CCcEeccCCcCccccc----c-----HHHHHHHHHHHHhhccCCCEEEEeCCCcchH------HHH-HHHhhhccCCCce
Confidence 2345544445555542 2 5555555544322 22222 2222221100 000 0111122233333
Q ss_pred cccccccccccccCCCCCCCCHHHHHHHHHHHHHhCCceeeeeeeecCCCCCCCCCCCcccccCcCCCCCCCCCCCCchh
Q 003585 251 LWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPK 330 (809)
Q Consensus 251 ~~tE~w~Gwf~~wG~~~~~r~~ed~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pK 330 (809)
+.- .-.++.++....+.++.+..+..+.+ .+ ..-..+++||..| +||.++.+-
T Consensus 211 iG~-------------~v~~~~~~~~~qv~~L~~~~a~~~~~-----------~~-~~~v~~~~dy~~~--~Yg~p~~e~ 263 (323)
T COG2515 211 IGI-------------DVSADPEKLKEQVLNLAQATAELLGL-----------GS-EADVLLSDDYHHP--GYGKPNEED 263 (323)
T ss_pred EEE-------------eecCCHHHHHHHHHHHHHHHHHHcCC-----------CC-CceEEEEecccCC--ccCCcCHHH
Confidence 311 12245566666666665554332111 11 1235799999999 899998777
Q ss_pred HHHHHHHH
Q 003585 331 YGHLKQLH 338 (809)
Q Consensus 331 y~~lr~l~ 338 (809)
+..+|.+.
T Consensus 264 ~e~i~~~~ 271 (323)
T COG2515 264 IEAIKLLA 271 (323)
T ss_pred HHHHHHHH
Confidence 77766653
No 225
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.25 E-value=2.9e+02 Score=30.42 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=46.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeeccc--chHHHHHHHHHHcCCEEEEcc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGS--YDLVRFIKTVQRVGLYAHLRI 117 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~--~dl~~fl~la~~~GL~VilR~ 117 (809)
..|+-...-+..|++|.+.++- ...-|+---|+|.|- .-|...-+.++++||.|+-++
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 6778888889999999999998 445677677999864 567666777889999998875
No 226
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.24 E-value=1.3e+02 Score=32.17 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=56.4
Q ss_pred eEEEEEEecCCC-CCHhHHHHHHHHHHHCCCCEEEEcccCCCCCC-----------CCceeeecccchHHHHHHHHHHcC
Q 003585 43 RILISGSIHYPR-STPEMWEDLIRKAKDGGLDVIDTYVFWNGHEP-----------SPGHYNFEGSYDLVRFIKTVQRVG 110 (809)
Q Consensus 43 ~~l~sG~iHy~R-~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp-----------~~G~ydF~G~~dl~~fl~la~~~G 110 (809)
+.+..|+-+..| ++.+.|.+.++++++.|+..|-+. .-.|. .+...++.|..+|..++.+.+...
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g---~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~ 200 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTG---GPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD 200 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEe---chhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC
Confidence 333444444444 699999999999998888776442 22221 245578889999999999999999
Q ss_pred CEEEEccCccccc
Q 003585 111 LYAHLRIGPYVCA 123 (809)
Q Consensus 111 L~VilR~GPyica 123 (809)
+.|-...||.--|
T Consensus 201 l~I~~Dsg~~HlA 213 (279)
T cd03789 201 LVVTNDSGPMHLA 213 (279)
T ss_pred EEEeeCCHHHHHH
Confidence 9999988875544
No 227
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.16 E-value=1.8e+02 Score=23.36 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003585 57 PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (809)
Q Consensus 57 ~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V 113 (809)
|-.-.+.+.-+.+.|+|.+.++. +..++.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 33456778889999999988876 3333334556666533 4889999999999765
No 228
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=21.87 E-value=6e+02 Score=25.58 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHHHHHHHHH
Q 003585 153 MQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAV 209 (809)
Q Consensus 153 ~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (809)
+.+-+.+++..++ ..+.++|.+ .||-|.-.-.+.+..+.|++.+-.+-.
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq 149 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQ 149 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4445566666666 346688887 489886332356678889876655443
No 229
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.65 E-value=6.5e+02 Score=29.10 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=46.4
Q ss_pred eEEEEEEecCCCCCHhH----HHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEcc-
Q 003585 43 RILISGSIHYPRSTPEM----WEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRI- 117 (809)
Q Consensus 43 ~~l~sG~iHy~R~~~~~----W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~- 117 (809)
.++++|.+.-...++.. ..+.++++++.++. +|+. +|.-|+-. .+....++.++.|++|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I-------~GNHD~~~--~l~~~~~~l~~~gi~vl~~~~ 109 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVL-------AGNHDSVA--TLNESRDLLAFLNTTVIASAS 109 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEE-------cCCCCChh--hhhhHHHHHHHCCcEEEeccc
Confidence 56788887644444433 33456677777764 3333 34444332 24456677889999988554
Q ss_pred -----CcccccccCCCCCCeEecccCC
Q 003585 118 -----GPYVCAEWNFGGFPVWLKYVPG 139 (809)
Q Consensus 118 -----GPyicaEw~~GG~P~WL~~~p~ 139 (809)
.|... +-..|...+|+.-.|-
T Consensus 110 ~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 110 DDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred ccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22211 2234545567765554
No 230
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=21.63 E-value=3.3e+02 Score=30.43 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=41.6
Q ss_pred EEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCCCC-C-CCceeeecccchHHHHHHHHHHc-CCEEEEccC
Q 003585 45 LISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHE-P-SPGHYNFEGSYDLVRFIKTVQRV-GLYAHLRIG 118 (809)
Q Consensus 45 l~sG~iHy~R~~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hE-p-~~G~ydF~G~~dl~~fl~la~~~-GL~VilR~G 118 (809)
++..++ .-..++.|.+..++++++|++.|+. |+.- | .++.+..+-...+.+.++.+++. .+-|++...
T Consensus 101 pvi~si--~g~~~~~~~~~a~~~~~~gad~iEl----N~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~ 171 (325)
T cd04739 101 PVIASL--NGVSAGGWVDYARQIEEAGADALEL----NIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS 171 (325)
T ss_pred eEEEEe--CCCCHHHHHHHHHHHHhcCCCEEEE----eCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 344555 2356799999999999999999999 6542 2 23443332112355666666553 444454443
No 231
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.48 E-value=2.1e+02 Score=31.35 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=39.4
Q ss_pred CHhHHHHHHHHHHHCC-CCEEEEcccCCCCCCCC--ceeeecc-cchHHHHHHHHHHc-CCEEEEccC
Q 003585 56 TPEMWEDLIRKAKDGG-LDVIDTYVFWNGHEPSP--GHYNFEG-SYDLVRFIKTVQRV-GLYAHLRIG 118 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~G-lNtI~tyvfWn~hEp~~--G~ydF~G-~~dl~~fl~la~~~-GL~VilR~G 118 (809)
.++.|.+..++++++| ++.|+. |.+-|.. |-+.+.. ...+.+.++.+++. .+-|+++.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iEl----N~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIEL----NISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEE----ECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6899999999999999 999999 6655542 1122221 23566677777765 555555554
No 232
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.42 E-value=65 Score=29.76 Aligned_cols=18 Identities=33% Similarity=0.117 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhccc
Q 003585 7 SKLLTWLWMALLLGTELI 24 (809)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (809)
.-||+.|+|++++|+++.
T Consensus 5 ~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345666667666656443
No 233
>PLN02389 biotin synthase
Probab=21.28 E-value=1.2e+02 Score=34.87 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEccc--CCCCCCCCceeeecccchHHHHHHHHHHcCCEE
Q 003585 61 EDLIRKAKDGGLDVIDTYVF--WNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYA 113 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvf--Wn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~V 113 (809)
++.++++|++|++.+..-+- -.++.-.-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 234
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.24 E-value=9.5e+02 Score=25.07 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=37.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEE
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHL 115 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vil 115 (809)
...-+++.+++++++|++.|+..- .+.+..+ ..++.++.++.++.||.+..
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--------~~~~~~~-~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--------GDLFPAD-YKELAELKELLADYGLEITS 63 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--------cccCCch-hhhHHHHHHHHHHcCcEEEe
Confidence 344578899999999999999854 1111111 11288999999999999875
No 235
>PRK14566 triosephosphate isomerase; Provisional
Probab=21.22 E-value=1.6e+02 Score=32.04 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 65 ~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
.++|++|++.|-. +|-|.+. .|. +-+..+.+=++.|.++||.+|+++|
T Consensus 89 ~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 89 QMLKDAGCRYVII----GHSERRR-MYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHcCCCEEEE----CcccccC-CCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4699999988887 6655553 332 3445677788999999999999987
No 236
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.85 E-value=31 Score=35.35 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCc--eeeecccchHHHHHHHHHHcCCEEEEc
Q 003585 43 RILISGSIHYPRS---TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPG--HYNFEGSYDLVRFIKTVQRVGLYAHLR 116 (809)
Q Consensus 43 ~~l~sG~iHy~R~---~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G--~ydF~G~~dl~~fl~la~~~GL~VilR 116 (809)
...-+|--.|.|+ .|-.-+ +-+.++|++.+-.= .--+.| -|||-...+|..|+++|+++||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3445666667675 343333 34677888875431 012344 599988889999999999999987664
No 237
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.68 E-value=1.8e+02 Score=31.61 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEEEccC
Q 003585 65 RKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIG 118 (809)
Q Consensus 65 ~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~VilR~G 118 (809)
.++|++|++.|-. +|-|.+. .|+ +.+..+.+=++.|.++||.+||++|
T Consensus 82 ~mL~d~G~~~vii----GHSERR~-~~~-E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 82 EMLKDLGAKYVLI----GHSERRL-YFG-ETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHcCCCEEEE----Ccccccc-ccc-cchHHHHHHHHHHHHCCCeEEEEcC
Confidence 3599999988887 6655544 222 2334566888899999999999987
No 238
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=20.67 E-value=6.9e+02 Score=26.10 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCCCCCCCc-eeeec-ccchHHHHHHHHHHcCCEEEEcc------CcccccccCCCCCCe
Q 003585 61 EDLIRKAKDGGLDVIDTYVFWNGHEPSPG-HYNFE-GSYDLVRFIKTVQRVGLYAHLRI------GPYVCAEWNFGGFPV 132 (809)
Q Consensus 61 ~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G-~ydF~-G~~dl~~fl~la~~~GL~VilR~------GPyicaEw~~GG~P~ 132 (809)
++.++.|+++|+|++.+ | .-.|+ |..-|.+.++..++.|+..+--- .||.--|.+ |...
T Consensus 67 ~~~~~~L~~~G~d~~tl-----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~--g~kV 133 (239)
T cd07381 67 PEVADALKAAGFDVVSL-----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVN--GIKV 133 (239)
T ss_pred HHHHHHHHHhCCCEEEc-----------ccccccccchHHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEEC--CEEE
Q ss_pred EecccCCeEeec----------CChhhHHHHHHHHHHHHHHHHccccccccCCceEEeccccccCCCcccCCcchHHHHH
Q 003585 133 WLKYVPGISFRT----------DNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVN 202 (809)
Q Consensus 133 WL~~~p~i~~Rt----------~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~ 202 (809)
=+...-...... ....-.+.++++++++-+. . .+ -|++.+...||.. .-..+.+
T Consensus 134 g~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~~~~~ 197 (239)
T cd07381 134 AFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPTPEQR 197 (239)
T ss_pred EEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCCHHHH
Q ss_pred HHHHHHHcCCCCc
Q 003585 203 WAAKMAVGLDTGV 215 (809)
Q Consensus 203 ~l~~~~~~~g~~v 215 (809)
.+++.+.+.|+++
T Consensus 198 ~la~~l~~~G~D~ 210 (239)
T cd07381 198 ELARALIDAGADL 210 (239)
T ss_pred HHHHHHHHCCCCE
No 239
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=20.40 E-value=1.6e+02 Score=31.74 Aligned_cols=50 Identities=28% Similarity=0.521 Sum_probs=37.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCCCCCCCceeeecccchHHHHHHHHHHcCCEEE-EccCccccc
Q 003585 56 TPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAH-LRIGPYVCA 123 (809)
Q Consensus 56 ~~~~W~~~l~k~Ka~GlNtI~tyvfWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~Vi-lR~GPyica 123 (809)
..+.-.+.++++|+.|+ -|+.++ +|.+ +.|+.|++.|-..| |-.|||..+
T Consensus 111 ~~~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 111 QFDKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34556677888999998 455544 5666 66899999999876 999999876
No 240
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=20.34 E-value=1.1e+02 Score=35.15 Aligned_cols=70 Identities=21% Similarity=0.401 Sum_probs=53.8
Q ss_pred cEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCC--CCEEEEcccCCCCCCCCceeeeccc-chHHHHHHHHHHcC
Q 003585 35 AILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGG--LDVIDTYVFWNGHEPSPGHYNFEGS-YDLVRFIKTVQRVG 110 (809)
Q Consensus 35 ~f~idGk~~~l~sG~iHy~R~-~~~~W~~~l~k~Ka~G--lNtI~tyvfWn~hEp~~G~ydF~G~-~dl~~fl~la~~~G 110 (809)
.=++||-+ +-.++.+.++- ..+.-+..|++.+..| -..|-| +|.|-.+|. .+|.++.++++++|
T Consensus 134 ASiidG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~ 201 (388)
T COG0156 134 ASIIDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYG 201 (388)
T ss_pred hhHHHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhC
Confidence 33778877 55666776665 6688888888876554 445555 899999998 89999999999999
Q ss_pred CEEEEc
Q 003585 111 LYAHLR 116 (809)
Q Consensus 111 L~VilR 116 (809)
.++++-
T Consensus 202 a~L~VD 207 (388)
T COG0156 202 ALLYVD 207 (388)
T ss_pred cEEEEE
Confidence 887764
Done!