Query 003585
Match_columns 809
No_of_seqs 309 out of 1534
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:17:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003585.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1633-1637//hhsearch_pdb/003585hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8d_A Glycosyl hydrolase, fam 1.0 1 1 1144.9 45.7 552 28-729 3-586 (595)
2 3thd_A Beta-galactosidase; TIM 1.0 1 1 1130.6 44.1 571 23-729 5-620 (654)
3 1tg7_A Beta-galactosidase; TIM 1.0 1 1 1108.9 45.3 661 26-728 3-947 (971)
4 3d3a_A Beta-galactosidase; pro 1.0 1 1 1098.4 47.2 566 24-729 3-588 (612)
5 3og2_A Beta-galactosidase; TIM 1.0 1 1 964.9 50.9 660 23-727 20-978 (1003)
6 3u7v_A Beta-galactosidase; str 1.0 1 1 315.0 11.5 186 9-209 19-225 (552)
7 1vem_A Beta-amylase; beta-alph 1.0 1 1 217.0 4.6 240 41-304 12-296 (516)
8 3tty_A Beta-GAL, beta-galactos 1.0 1 1 213.5 19.5 286 41-348 6-390 (675)
9 1kwg_A Beta-galactosidase; TIM 1.0 1 1 205.2 19.3 271 45-345 1-391 (645)
10 3pzg_A Mannan endo-1,4-beta-ma 1.0 1 1 173.2 10.1 181 31-218 15-221 (383)
No 1
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=1.00 E-value=1 Score=1144.88 Aligned_cols=552 Identities=29% Similarity=0.541 Sum_probs=458.1
Q ss_pred EEEEECCCEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 39980671999797969999985199999768999999999779988998210787799894134306200999999999
Q 003585 28 TVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIKTVQ 107 (809)
Q Consensus 28 ~vt~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlNtV~tYvfWn~hEp~~G~ydF~G~~dl~~fl~la~ 107 (809)
+++++ ++|++||+|++++||++||+|+||++|+++|+|||++|+|||++|||||.|||+||+|||+|++||++||++|+
T Consensus 3 ~F~i~-~~f~~dG~p~~i~~G~~Hy~r~p~~~W~d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fdF~g~~dL~~fl~~a~ 81 (595)
T 4e8d_A 3 RFEIR-DDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDLDLEKFLQIAQ 81 (595)
T ss_dssp CEEES-SSEEETTEECCCEEEEECGGGSCGGGHHHHHHHHHHTTCCEEEEECCHHHHCSBTTBCCCSGGGCHHHHHHHHH
T ss_pred EEEEC-CEEEECCEEEEEEEEEECHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCEECCCCHHHHHHHHHHHH
T ss_conf 07967-77999998989989985722299999999999999739977998536787089887541346366999999999
Q ss_pred HCCCEEEECCCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 82979997058412210288988807322598375239955699999999999999770533413698649742455657
Q 003585 108 RVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYG 187 (809)
Q Consensus 108 ~~GL~ViLR~GPYicaEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg 187 (809)
++||+|||||||||||||++||+|.||.++| +++|++|+.|++++++|+++|+++++ ++++++||||||+|||||||
T Consensus 82 ~~Gl~VilrpGPYi~aEw~~GG~P~WL~~~p-~~lRt~~p~y~~~~~~~~~~l~~~l~--~~~~~~GgpVI~~QvENEyG 158 (595)
T 4e8d_A 82 DLGLYAIVRPSPFICAEWEFGGLPAWLLTKN-MRIRSSDPAYIEAVGRYYDQLLPRLV--PRLLDNGGNILMMQVENEYG 158 (595)
T ss_dssp HTTCEEEEECCSCCCTTBGGGGCCGGGGGSS-SCSSSSCHHHHHHHHHHHHHHGGGTG--GGBGGGTSCEEEEESSSSGG
T ss_pred HCCCEEEEECCCCEECCCCCCCCCHHHCCCC-CEECCCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEECCCCCC
T ss_conf 8699899704774301217782775550687-45315897999999999999999998--87410699889997554346
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCC-------CC--CCCCCCCC-CCCC-CCC------CCCCCCC-C
Q ss_conf 8764579013999999999987089984527607889-------99--64323778-8755-777------9899999-9
Q 003585 188 PESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKEDD-------AP--DPVINSCN-GFYC-DAF------SPNKPYK-P 249 (809)
Q Consensus 188 ~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~c~~~~-------~p--~~vi~t~n-g~~~-~~~------~~~~p~~-P 249 (809)
++ + ++++|++||+++++++|++|||+||++.+ +. +++++||| |.+| +.| .+++|++ |
T Consensus 159 ~~----~-~~~~Y~~~l~~~~~~~Gi~vpl~t~d~~~~~~~~~G~~~~~~~~~t~nfg~~~~~~~~~~~~~~~~~p~~~P 233 (595)
T 4e8d_A 159 SY----G-EDKAYLRAIRQLMEECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWP 233 (595)
T ss_dssp GT----C-CCHHHHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHCCGGGTCEEEEEESSCHHHHHHHHHHHHHHTTCCCC
T ss_pred CC----C-CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 65----7-718999999999997599678998259513104588537888377761798566767788876303899998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC----C---CCCCCCCCCCCCC
Q ss_conf 20221254334554898777897889999999998099111222653278978779999----6---3345768998887
Q 003585 250 TLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGP----F---ITTSYDYDAPLDE 322 (809)
Q Consensus 250 ~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~s~~NyYM~hGGTNfG~~~G~~----~---~~TSYDYdAPl~E 322 (809)
+||+|||+|||++||+++++|++++++.++++++++| | +||||||||||||+|+|++ + ++|||||||||+|
T Consensus 234 ~~~~Ef~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g-s-~N~YM~hGGTNfG~~~Ga~~~~~~~~p~~TSYDYdApi~E 311 (595)
T 4e8d_A 234 LMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQG-S-INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDE 311 (595)
T ss_dssp CEEEEEECSCCCBTTSCCCCCCHHHHHHHHHHHHHHS-E-EEEEEEECCBCCTTCBCEEEETTEEEEBCSBCCTTCSBCT
T ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-C-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0898631654455699877789999999999999769-9-5498554532724246877777777787776677980586
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCEEEECCCCC
Q ss_conf 89888524799999999998521124689994357898531023204976212353015777411899678242049973
Q 003585 323 YGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWS 402 (809)
Q Consensus 323 ~G~~~~pKy~~lr~l~~~i~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~lp~~s 402 (809)
+|++ +|||.++|+++.... .+...+. |...+ ...|. .|.+.. .
T Consensus 312 ~G~~-t~Ky~~lr~~i~~~~--~~~p~~~-P~~~~------~~~~~-------------------~v~l~~--------~ 354 (595)
T 4e8d_A 312 EGNP-TAKYLAVKKMMATHF--SEYPQLE-PLYKE------SMELD-------------------AIPLVE--------K 354 (595)
T ss_dssp TSCB-CHHHHHHHHHHHHHC--TTSCCCC-CCCCC------BCCEE-------------------EEEEEE--------E
T ss_pred CCCC-CHHHHHHHHHHHHHC--CCCCCCC-CCCCC------CCCCC-------------------EEEECC--------C
T ss_conf 7783-478999999999747--7999999-98776------43565-------------------087504--------1
Q ss_pred EEECCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEEE
Q ss_conf 00048887100014221010100111356655566544---333433467787544442011107889995579999985
Q 003585 403 ISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWET---YDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSV 479 (809)
Q Consensus 403 vsilpdc~~v~~nta~v~~q~~~~~~~~~~~~~~~w~~---~~e~~~~~~~~~~~~~~~~lEql~~t~d~sgYlwY~T~v 479 (809)
++ .|+. +.+++.+. . |.+||+++| .+||++|+|++
T Consensus 355 ~~--------------------------------L~~~l~~l~~~~~s~---~----P~~mE~lgq---~~GyvlY~t~i 392 (595)
T 4e8d_A 355 VS--------------------------------LFETLDSLSSPVESL---Y----PQKMEELGQ---SYGYLLYRTET 392 (595)
T ss_dssp EE--------------------------------HHHHHHHHCCCEEES---S----CCBTGGGTC---CSSEEEEEEEE
T ss_pred CC--------------------------------HHHHHHHCCCCCCCC---C----CCCHHHCCC---CCCEEEEEECC
T ss_conf 54--------------------------------899665507764369---9----889889299---76759998226
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCCCCCCC-CEEEEEEECCCCCCCCCCC-
Q ss_conf 05898100158997705646845089999999999999743467403886111246898-8599999447964455798-
Q 003585 480 EISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLSIAVGLPNVGLHY- 557 (809)
Q Consensus 480 ~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNG~~vGs~~g~~~~~~~~~~~~i~l~~G~-n~L~iL~en~G~~NyG~~~- 557 (809)
...... ..|++..++|+|+|||||+++|++++.....++ +++...+. ++|+||||||||+|||..+
T Consensus 393 ~~~~~~--------~~L~~~~~~Dra~Vfvdg~~~g~l~r~~~~~~i----~~~~~~~~~~~L~ILVEN~GRvNyG~~~~ 460 (595)
T 4e8d_A 393 NWDAEE--------ERLRIIDGRDRAQLYVDGQWVKTQYQTEIGEDI----FYQGKKKGLSRLDILIENMGRVNYGHKFL 460 (595)
T ss_dssp ECSSSS--------EEEEEEEEESEEEEEETTEEEEEEEGGGTTSCE----EECCCSSSEEEEEEEEECCCCCCSGGGTT
T ss_pred CCCCCC--------CEEECCCCCEEEEEEECCEEEEEEECCCCCCEE----EEECCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 888887--------346327874489999899799999745676147----85357788778999998589751675568
Q ss_pred -CCCCCCEECCEEECCCCCCCCCCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf -95554210238994313888358448938-9605852123334899888886567875535667741999999689999
Q 003585 558 -ETWETGVRGAVVLHGLDHGNKDLTWQKWS-YQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGN 635 (809)
Q Consensus 558 -~~~~kGI~G~V~L~g~~~g~~dLs~~~W~-y~vgL~gE~~~l~~~~~~~~~~W~~~~~~~~~~~~~twYkttF~~p~g~ 635 (809)
+.++|||+|+|+|++. .|+ +|+ |.++|+.- ..+.|..... ...|+||+++|++++..
T Consensus 461 ~~~~~KGi~g~V~l~~~-----~l~--~W~~~~L~l~~~----------~~~~~~~~~~----~~~P~fy~g~f~~~~~~ 519 (595)
T 4e8d_A 461 ADTQRKGIRTGVCKDLH-----FLL--NWKHYPLPLDNP----------EKIDFSKGWT----QGQPAFYAYDFTVEEPK 519 (595)
T ss_dssp CGGGSCEEEEEEEETTE-----ECC--CEEEEEECCCCG----------GGCCTTSCCC----TTSCEEEEEEEEESSCC
T ss_pred CCCCCCCCCCCEEECCE-----ECC--CCEEEEECCCHH----------HHCCCCCCCC----CCCCEEEEEEEECCCCC
T ss_conf 68888787887699999-----857--848976333113----------2223455667----88975899999759988
Q ss_pred CCEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEC
Q ss_conf 96289508996089998782201222034469876666678767754467889971012214866544676379887541
Q 003585 636 EPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEEL 715 (809)
Q Consensus 636 dpv~Ldl~gmgKG~vwVNG~~iGRYWp~~~~g~~~~c~y~G~y~~~kc~t~cg~PqQtlYhVP~~~Lk~g~N~LVifEe~ 715 (809)
| |||||+|||||+|||||+||||||+ +| |||||| ||++|||+|.|+|||||++
T Consensus 520 D-TfLd~~gwgKG~v~VNG~nLGRYW~------------~G-------------PQ~tLY-vP~~~Lk~G~NeIvvfEl~ 572 (595)
T 4e8d_A 520 D-TYLDLSEFGKGVAFVNGQNLGRFWN------------VG-------------PTLSLY-IPHSYLKEGANRIIIFETE 572 (595)
T ss_dssp B-EEEECTTCCEEEEEETTEEEEEEET------------TC-------------SBCEEE-ECGGGSCSEEEEEEEEESS
T ss_pred C-EEEECCCCCEEEEEECCEEEECCCC------------CC-------------CEEEEE-ECHHHHCCCCCEEEEEEEC
T ss_conf 8-7996788864889988721352467------------79-------------768899-6389957687269999952
Q ss_pred CCCCCCEEEEEECH
Q ss_conf 99974359983212
Q 003585 716 GGDASRISLVKRSV 729 (809)
Q Consensus 716 gg~p~~I~~~t~~~ 729 (809)
+.....|+|.+..+
T Consensus 573 ~~~~~~i~~~~~p~ 586 (595)
T 4e8d_A 573 GQYKEEIHLTRKPT 586 (595)
T ss_dssp SCCCSEEEEESSCC
T ss_pred CCCCCEEEEECCCC
T ss_conf 78885478634666
No 2
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*
Probab=1.00 E-value=1 Score=1130.56 Aligned_cols=571 Identities=29% Similarity=0.483 Sum_probs=453.7
Q ss_pred CCCCEEEEEECCCEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 23312399806719997979699999851999997689999999997799889982107877998941343062009999
Q 003585 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRF 102 (809)
Q Consensus 23 ~~~~~~vt~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlNtV~tYvfWn~hEp~~G~ydF~G~~dl~~f 102 (809)
....++|+||+++|++||||++++||++||+|+||++|+++|+|||++|+|+|++||+||.|||+||+|||+|++||++|
T Consensus 5 ~~r~~~v~~d~~~f~ldGkp~~i~sG~~Hy~r~p~~~W~d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fdF~g~~DL~~f 84 (654)
T 3thd_A 5 TQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYF 84 (654)
T ss_dssp -CCCEEEETTTTEEEETTEEECCEEEECCGGGSCGGGHHHHHHHHHHTTCSEEEEECCHHHHCSBTTBCCCSGGGCHHHH
T ss_pred CCCCEEEEECCCEEEECCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCCHHHHHHH
T ss_conf 78717999728979999978789888646454998999999999997199889999633640898984674553779999
Q ss_pred HHHHHHCCCEEEECCCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC
Q ss_conf 99999829799970584122102889888073225983752399556999999999999997705334136986497424
Q 003585 103 IKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQI 182 (809)
Q Consensus 103 l~la~~~GL~ViLR~GPYicaEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QI 182 (809)
|++|+++||+|||||||||||||++||+|.||.++|++.+|++|+.|++++++|+++|+++++ ++++++||||||+||
T Consensus 85 l~~a~~~GL~ViLr~GPyi~aEw~~GG~P~WL~~~p~i~~Rt~~p~y~~~~~~~~~~l~~~l~--~~~~~~ggpVI~~Qv 162 (654)
T 3thd_A 85 LRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQV 162 (654)
T ss_dssp HHHHHHTTCEEEEECCSCCCTTBGGGGCCGGGGGSTTCCSSSCCHHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEC
T ss_pred HHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEE
T ss_conf 999998699899556774321038886896785599845742998999999999999999852--431247997899983
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCEEEECCCCCCCCCCCCC---CCCCC-CCCCC-------------C
Q ss_conf 55657876457901399999999998708-9984527607889996432377---88755-77798-------------9
Q 003585 183 ENEYGPESKSLGAAGHAYVNWAAKMAVGL-DTGVPWVMCKEDDAPDPVINSC---NGFYC-DAFSP-------------N 244 (809)
Q Consensus 183 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vP~~~c~~~~~p~~vi~t~---ng~~~-~~~~~-------------~ 244 (809)
|||||+ |+.|+++||+||++++++. |+.||+++|++. .+.+.+| +|.+| .+|.+ .
T Consensus 163 ENEyG~----y~~~d~~Ym~~l~~~~~~~~Gi~v~l~t~D~~---~~~~~~~g~~~g~~~t~~f~~~~~~~~~~~~~~~~ 235 (654)
T 3thd_A 163 ENEYGS----YFACDFDYLRFLQKRFRHHLGDDVVLFTTDGA---HKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKC 235 (654)
T ss_dssp SSCGGG----SSCCCHHHHHHHHHHHHHHHCSSSEEEEEEES---SHHHHHHHCBTTBEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCC----CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC---CCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
T ss_conf 144566----56561999999999998744996556960698---53443478757713102468796378999999974
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC--C--CCCCCCCCCCC
Q ss_conf 9999920221254334554898777897889999999998099111222653278978779999--6--33457689988
Q 003585 245 KPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGP--F--ITTSYDYDAPL 320 (809)
Q Consensus 245 ~p~~P~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~s~~NyYM~hGGTNfG~~~G~~--~--~~TSYDYdAPl 320 (809)
+|++|+||+|||+|||++||++++.|++++++..+++++++|+| +||||||||||||||+|++ + ++|||||||||
T Consensus 236 ~p~~P~~~~Ef~~Gwfd~WG~~~~~~~~~~~~~~~~~~l~~g~s-~N~YM~hGGTNfG~~~Ga~~~~~~~~TSYDYdApi 314 (654)
T 3thd_A 236 EPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPL 314 (654)
T ss_dssp CSSSCCEEEEEESSCCCCTTSCCCCCCHHHHHHHHHHHHHTTCE-EEEECSBCCBCCTTCBCEETTTEECCSBCCTTCSB
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89989599610153577579987788989999999999965984-58986345336232467887788735667678724
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCEEEECCC
Q ss_conf 87898885247999999999985211246899943578985310232049762123530157774118996782420499
Q 003585 321 DEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPP 400 (809)
Q Consensus 321 ~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~lp~ 400 (809)
+|+|++ +|||.++|++. +.+.+......|...+ ...|. .|.+. -..
T Consensus 315 ~E~G~~-t~Ky~~lr~li---~~~~~~~~~~~P~~~p------~~~~~-------------------~v~l~---~~~-- 360 (654)
T 3thd_A 315 SEAGDL-TEKYFALRNII---QKFEKVPEGPIPPSTP------KFAYG-------------------KVTLE---KLK-- 360 (654)
T ss_dssp CTTCCB-CHHHHHHHHHH---TTTSCCCCSCCCCCCC------BCCCE-------------------EEECE---EEE--
T ss_pred CCCCCC-CHHHHHHHHHH---HHHCCCCCCCCCCCCC------CCCCC-------------------CEEEC---CCC--
T ss_conf 635673-37899999999---9714799888999876------45667-------------------57522---223--
Q ss_pred CCEEECCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCC---C--CCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEE
Q ss_conf 73000488871000142210101001113566555665443---3--343346778754444201110788999557999
Q 003585 401 WSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETY---D--EDISSLGESSTLTAIGLLEQINITRDTSDYLWY 475 (809)
Q Consensus 401 ~svsilpdc~~v~~nta~v~~q~~~~~~~~~~~~~~~w~~~---~--e~~~~~~~~~~~~~~~~lEql~~t~d~sgYlwY 475 (809)
..|+.+ . +++.+. . |..||+++| .+||++|
T Consensus 361 -----------------------------------~L~~~l~~l~~~~~~~s~---~----P~tmE~l~Q---~~GyvlY 395 (654)
T 3thd_A 361 -----------------------------------TVGAALDILCPSGPIKSL---Y----PLTFIQVKQ---HYGFVLY 395 (654)
T ss_dssp -----------------------------------ETTTTHHHHCTTCCEEES---S----CCBTGGGTC---CSSEEEE
T ss_pred -----------------------------------CHHHHHHHHCCCCCCCCC---C----CCCHHHHCC---CCCEEEE
T ss_conf -----------------------------------489977762767775369---9----889899288---7576999
Q ss_pred EEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 99850589810015899770564684508999999999999974346740388611124689885999994479644557
Q 003585 476 MTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGL 555 (809)
Q Consensus 476 ~T~v~~~~~~~~~~~g~~~~L~v~~~~d~~~vfVNG~~vGs~~g~~~~~~~~~~~~i~l~~G~n~L~iL~en~G~~NyG~ 555 (809)
+|++.....++ ....|.+..++|+|+|||||+++|++.+... .. +++..+.+ ++|+||||||||+|||.
T Consensus 396 ~t~i~~~~~~~-----~~l~l~~~~v~Dra~Vfvdg~~~G~l~r~~~---~~--l~~~~~~~-~~L~ILVEN~GRvNyG~ 464 (654)
T 3thd_A 396 RTTLPQDCSNP-----APLSSPLNGVHDRAYVAVDGIPQGVLERNNV---IT--LNITGKAG-ATLDLLVENMGRVNYGA 464 (654)
T ss_dssp EEECSSCEEEE-----EEEECTTCCEESEEEEEETTEEEEEEETTTB---CE--EEEEECTT-CEEEEEEECCCCBCSSG
T ss_pred EEECCCCCCCC-----CCEEECCCCCCEEEEEEECCEEEEEEECCCC---EE--EECCCCCC-CEEEEEEECCCCCCCCC
T ss_conf 83257777888-----4034304786327999889979999961565---26--75058889-88999997488654688
Q ss_pred CCCCCCCCEECCEEECCCCCCCCCCCCCCCE-EEECCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 9895554210238994313888358448938-96058521233348-----99888886567875535667741999999
Q 003585 556 HYETWETGVRGAVVLHGLDHGNKDLTWQKWS-YQVGLKGEAMNLVS-----PSEATSVDWTRGSLAAQGQQSLKWYKAYF 629 (809)
Q Consensus 556 ~~~~~~kGI~G~V~L~g~~~g~~dLs~~~W~-y~vgL~gE~~~l~~-----~~~~~~~~W~~~~~~~~~~~~~twYkttF 629 (809)
.+ +++|||+|+|+|++. .|+ +|+ |.++|+........ ..+.....|.... .. ...|+||+++|
T Consensus 465 ~i-~d~KGi~g~V~l~~~-----~l~--~W~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~P~fy~g~f 533 (654)
T 3thd_A 465 YI-NDFKGLVSNLTLSSN-----ILT--DWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWAHNS--SN-YTLPAFYMGNF 533 (654)
T ss_dssp GG-CCCCEECSCCEETTE-----ECC--CEEEEECCHHHHHHTTTTTTCCC----------------C-CCCCEEEEEEE
T ss_pred CC-CCCCCCCCCEEECCE-----ECC--CCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCC--CC-CCCCEEEEEEE
T ss_conf 77-878988776578999-----827--848986526125544320122333322233445666--67-88877999999
Q ss_pred ECCCCC----CCEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 689999----9628950899608999878220122203446987666667876775446788997101221486654467
Q 003585 630 DAPTGN----EPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPT 705 (809)
Q Consensus 630 ~~p~g~----dpv~Ldl~gmgKG~vwVNG~~iGRYWp~~~~g~~~~c~y~G~y~~~kc~t~cg~PqQtlYhVP~~~Lk~g 705 (809)
+++.+. .+|||||+|||||+|||||+||||||++ +| |||||| ||++|||+|
T Consensus 534 ~i~~~~~~~p~DTFLd~~gWgKGvV~VNG~NLGRYW~~-----------~G-------------PQ~TLY-vP~p~Lk~G 588 (654)
T 3thd_A 534 SIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPA-----------RG-------------PQLTLF-VPQHILMTS 588 (654)
T ss_dssp CCCSSCTTCSCBEEEECTTCCSEEEEETTEEEEEECTT-----------TC-------------SCCCEE-ECGGGCCSS
T ss_pred ECCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCC-----------CC-------------CEEEEE-ECHHHHCCC
T ss_conf 72677788887779967888707999898025425477-----------79-------------768889-648995889
Q ss_pred -CCEEEEEEECCCCC-------CCEEEEEECH
Q ss_conf -63798875419997-------4359983212
Q 003585 706 -KNLLVVFEELGGDA-------SRISLVKRSV 729 (809)
Q Consensus 706 -~N~LVifEe~gg~p-------~~I~~~t~~~ 729 (809)
.|+|||||+++... ..|+|.+..+
T Consensus 589 ~~NeIiVfEle~~~~~~~~~~~~~i~~~~~P~ 620 (654)
T 3thd_A 589 APNTITVLELEWAPCSSDDPELCAVTFVDRPV 620 (654)
T ss_dssp SCEEEEEEESSCCSCSSSCGGGSEEEEESSCC
T ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf 98469999951687655556652599635565
No 3
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Probab=1.00 E-value=1 Score=1108.90 Aligned_cols=661 Identities=27% Similarity=0.435 Sum_probs=537.6
Q ss_pred CEEEEEECCCEEECCEEEEEEEEEECCCCCC-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHH
Q ss_conf 1239980671999797969999985199999-768999999999779988998210787799894134306200999999
Q 003585 26 CSTVTYDRKAILINGQRRILISGSIHYPRST-PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFIK 104 (809)
Q Consensus 26 ~~~vt~d~~~~~idG~~~~l~sG~iHy~R~~-~e~W~~~l~k~Ka~GlNtV~tYvfWn~hEp~~G~ydF~G~~dl~~fl~ 104 (809)
...|+||+++|+|||+|++++||++||+|+| |++|+++|+|||++|+|+|++|||||.|||+||+|||+|++||++||+
T Consensus 3 ~~~v~~d~~~~~idG~p~~l~sG~~hy~r~p~~~~W~d~l~kmka~G~NtV~~yvfW~~hEP~~G~fdF~g~~dL~~fl~ 82 (971)
T 1tg7_A 3 QKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFD 82 (971)
T ss_dssp CSSEEECSSCEEETTEEECEEEEECCGGGSCCGGGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHH
T ss_pred CCEEEECCCEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCEECCCCHHHHHHHHH
T ss_conf 53699848879999949999998888210894678999999999709999999646777089888322456678999999
Q ss_pred HHHHCCCEEEECCCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC
Q ss_conf 99982979997058412210288988807322598375239955699999999999999770533413698649742455
Q 003585 105 TVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIEN 184 (809)
Q Consensus 105 la~~~GL~ViLR~GPYicaEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIEN 184 (809)
+|+++||+|||||||||||||++||+|.||.++|+ ++|++||.|++++++|+++|+++++ +++++|||||||+||||
T Consensus 83 ~a~e~Gl~ViLr~GPyi~aE~~~GG~P~WL~~~p~-~lR~~~p~y~~~~~~~~~~l~~~~~--~~~~~~ggpVI~~QveN 159 (971)
T 1tg7_A 83 AAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDG-ILRTSDEAYLKATDNYASNIAATIA--KAQITNGGPIILYQPEN 159 (971)
T ss_dssp HHHHHTCEEEEECCSCCCTTBGGGGCCGGGGGCSS-CTTSSCHHHHHHHHHHHHHHHHHHH--HTBGGGTSSEEEECCSS
T ss_pred HHHHCCCEEEEECCCCCCCEECCCCCCEEECCCCC-EECCCCHHHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEECCC
T ss_conf 99985998997058742114447873156035688-7547998999999999999999986--43201799777873266
Q ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC----CCCCCCCCCC---------CCCCCC--------CC-
Q ss_conf 657876-457901399999999998708998452760788----9996432377---------887557--------77-
Q 003585 185 EYGPES-KSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKED----DAPDPVINSC---------NGFYCD--------AF- 241 (809)
Q Consensus 185 Eyg~~~-~~~~~~~~~y~~~l~~~~~~~g~~vP~~~c~~~----~~p~~vi~t~---------ng~~~~--------~~- 241 (809)
|||+.. +.++..+++|++|++++++++|++||++||++. ..+..+...+ .+++|. .|
T Consensus 160 Eyg~~~~~~~~~~~~~Y~~~l~~~~r~~g~~vPl~tn~~~~~~~~~~~~~~g~ldv~~~D~Yp~g~~~~~~~~~~~~~~~ 239 (971)
T 1tg7_A 160 EYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLP 239 (971)
T ss_dssp CCCCBCTTCCCCSCHHHHHHHHHHHHHTTCCSCBBCCBSSSSCTTCTTSCTTCCSBCEEEECTTCSCCSCTTCCCTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56766666531669999999999999709983399954754455465433573248753777665656775542000001
Q ss_pred -------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-----HHHHHCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf -------989999992022125433455489877789788999999-----99980991112226532789787799996
Q 003585 242 -------SPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVA-----RFIQKGGSFFNYYMYHGGTNFGRTAGGPF 309 (809)
Q Consensus 242 -------~~~~p~~P~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~-----~~~~~g~s~~NyYM~hGGTNfG~~~G~~~ 309 (809)
+..+|++|.|++|+|+|||++||+.+++|++++.+..++ .+++.|++.+||||||||||||+++ ++.
T Consensus 240 ~~~~d~~r~~~p~~P~~~~E~~~Gw~~~Wg~~~~~~~~~~~~~~~~~~~~~~~la~Ga~~vnyYm~~GGTNfG~~~-g~~ 318 (971)
T 1tg7_A 240 TYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLG-HPG 318 (971)
T ss_dssp CCHHHHHHHHCTTSCCEEEEEESSCCCCTTCCCHHHHHHHTSHHHHHHHHHHHHTTTCSEEEEECSBCCBCCTTCB-CTT
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-CCC
T ss_conf 5699986423899997998137857567788765666355768999999999997799789999710435776567-877
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC--------------CCCCCC--CCCEEEE------
Q ss_conf 334576899888789888524799999999998521124689994--------------357898--5310232------
Q 003585 310 ITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPT--------------VTSLGT--YQQAHVF------ 367 (809)
Q Consensus 310 ~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~~~~~--------------~~~~g~--~~~~~~~------ 367 (809)
++|||||||||+|+|++++|||.++|+||++|+.+++. +..++. ...+.+ ..++..|
T Consensus 319 ~~tSYDy~Apl~E~G~~t~~ky~elr~l~~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~f~~~r~~~ 397 (971)
T 1tg7_A 319 GYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGY-LVANPGDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSD 397 (971)
T ss_dssp SCSBCCTTCSBCTTCCCCSHHHHHHHHHHHHHHTCHHH-HTSEECCCBSSSSBSCTTEEEEEEECSSTTSCEEEEEEESS
T ss_pred CCEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHCHHH-HCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCC
T ss_conf 30052347560767883646899999999999867576-51587667654446787438999434789851899996567
Q ss_pred ----------------------------------------------------------E--C-C----------------
Q ss_conf ----------------------------------------------------------0--4-9----------------
Q 003585 368 ----------------------------------------------------------S--A-G---------------- 370 (809)
Q Consensus 368 ----------------------------------------------------------~--~-~---------------- 370 (809)
. . .
T Consensus 398 ~~~~~~~~~~l~v~ts~g~~~iP~~~g~i~l~gr~ski~~~d~~~g~~~l~ysTa~~~t~~~~~~~~v~vly~~~g~~~e 477 (971)
T 1tg7_A 398 YSSQASVEYKLTVPTSAGNLTIPQLGGSLTLSGRDSKIHVTDYDVAGTNILYSTAEVFTWKKFNNEKVLVLYGGPGEHHE 477 (971)
T ss_dssp TTCCCCEEECEEEEETTEEEEECSSSSCEEECTTCCEEEEEEEEETTEEEEEESSEEEEEEEETTEEEEEEEECTTCEEE
T ss_pred CCCCCCEEEEEEEECCCCCEECCCCCCCEEECCCCEEEEECCCCCCCEEEEEEEEEEEEEEEECCCEEEEEECCCCCCEE
T ss_conf 87777448999975589877616778736788973089953432487689986200479888789049999848997337
Q ss_pred -----------CCCE-E---------EEEECCCCCCCEE-EEECCE-----------EEECCC-----------------
Q ss_conf -----------7621-2---------3530157774118-996782-----------420499-----------------
Q 003585 371 -----------QQKC-A---------AFLSNYNTKSAAR-VTFNGR-----------QYNLPP----------------- 400 (809)
Q Consensus 371 -----------~~~~-~---------~Fl~n~~~~~~~~-v~~~~~-----------~~~lp~----------------- 400 (809)
.+.| + +|+.|.......+ |+|++. .|-+|+
T Consensus 478 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~lld~~~A~~~w~p~~~~~~~~~~~~~~~~~~ 557 (971)
T 1tg7_A 478 FAVSGASSSSVVEGSSSGISSKKVGKALVVAWDVSTARRIVQVGSLKVFLLDRNSAYNYWVPQVPTKGTAPGYSNQETTA 557 (971)
T ss_dssp EEEETCCCCEEEESCCTTCEEEEETTEEEEEEECCSSCEEEEETTEEEEEEEHHHHTTEECCCCCSSSSCCCCCSHHHHH
T ss_pred EEEECCCCEEEECCCCCCEEEECCCCEEEEEECCCCCEEEEEECCEEEEEECHHHHHEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99953762035057665305843685499950468854899979989999645764108655446766667656655678
Q ss_pred -----------CCEEE-------------------C--C-CCCCEECCCCEEEEECCCCC----CCC----CC----CCC
Q ss_conf -----------73000-------------------4--8-88710001422101010011----135----66----555
Q 003585 401 -----------WSISI-------------------L--P-DCKNVVFNTAKVAVQHTKMQ----MLP----TG----SKL 435 (809)
Q Consensus 401 -----------~svsi-------------------l--p-dc~~v~~nta~v~~q~~~~~----~~~----~~----~~~ 435 (809)
||+|| + | +|++|+||+++|.+|++... +.+ .. ...
T Consensus 558 ~~v~v~g~ylvrsasi~~~~l~l~gd~~~~t~~ev~~~p~~~~~v~~Ng~~v~~~~~~~g~~~~~~~~~~~~~~~P~l~~ 637 (971)
T 1tg7_A 558 SSIIVKAGYLVRSAYLDGNDLHIQADFNATTPIEVVGAPSGAKNLVINGKKTQTKVDKNGIWSASVAYTAPKVQLPSLKS 637 (971)
T ss_dssp TCCEEECSSEEEEEEEETTEEEEEEEBSSCEEEEEESCCTTCCEEEETTEEECCEECTTCCEEEEECCCCCCCCCCCGGG
T ss_pred CEEEEECCCEEEEEEEECCEEEEEEECCCCCEEEEEECCCCCCEEEECCEECEEEECCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 51898667078999980988999852488822799856888668999998840577468618875477765424656677
Q ss_pred CCCCCCCC---CCCCCCCCCCCCCCCHHHHCCC----C----CCCCCE------EEEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 66544333---4334677875444420111078----8----999557------99999850589810015899770564
Q 003585 436 LSWETYDE---DISSLGESSTLTAIGLLEQINI----T----RDTSDY------LWYMTSVEISSSESFLRGGQKPTLTV 498 (809)
Q Consensus 436 ~~w~~~~e---~~~~~~~~~~~~~~~~lEql~~----t----~d~sgY------lwY~T~v~~~~~~~~~~~g~~~~L~v 498 (809)
+.|+...+ ..+.+ ++...+...+.|+.++ | .+.+|| +|||++|.+..++ ..|.+
T Consensus 638 l~Wk~~~~~pe~~~~~-dDs~W~~~~l~~~~n~~~p~t~p~~~~~sdYGf~~G~lwYR~~F~~~~~~--------~~L~~ 708 (971)
T 1tg7_A 638 LKWKSVDTLPEAKNTY-DDSAWTSADHAYTNNSAHSLQTPTSLFASDYGYHTGALLFRGHFTANGKE--------KTFFV 708 (971)
T ss_dssp SCCEEEESCGGGSTTC-CCTTSEECCCSSCCCTTCCCSSSSCCBGGGGTCCSSCEEEEEEEECCSCC--------CEEEE
T ss_pred CCEEEECCCCCCCCCC-CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC--------EEEEE
T ss_conf 8828957784346888-87776589870213434778877667777668667429999899878860--------38999
Q ss_pred C---CCCEEEEEEECCEEEEEEECCCC--CCEEEEEECCCCCC-CCCEEEEEEECCCCCCC---CCCCCCCCCCEECCEE
Q ss_conf 6---84508999999999999974346--74038861112468-98859999944796445---5798955542102389
Q 003585 499 E---SAGHAVHVFINGQFLGSAFGTRE--NRRFTFSGPANLRA-GINKIALLSIAVGLPNV---GLHYETWETGVRGAVV 569 (809)
Q Consensus 499 ~---~~~d~~~vfVNG~~vGs~~g~~~--~~~~~~~~~i~l~~-G~n~L~iL~en~G~~Ny---G~~~~~~~kGI~G~V~ 569 (809)
+ +++|.++|||||+++|+..+... ..++.|+. ..|+. |+|+|+|||+|+|++|+ |++++++++||. +|+
T Consensus 709 ~~~gG~~~~~~VwvNG~~lGs~~g~~~~~~~~~~~~l-~~L~~gg~NvI~Vlvdn~G~~nsWy~G~~~~~~~~GI~-~v~ 786 (971)
T 1tg7_A 709 QTKGGTAYGHSIWINETYVGSWAGTSINDNNNATYTL-PTLQSGKNYVITVVIDNMGLDEDWTIGSEDMKNPRGII-QYS 786 (971)
T ss_dssp EEECSTTCCEEEEETTEEEEEECCCTTCSEEEEEEEC-CCCCTTCEEEEEEEECCCCCCCCCSBTCCGGGCCCEEE-EEE
T ss_pred EECCCCCCEEEEEECCEEEEEEECCCCCCCCCEEEEE-EEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCE-EEE
T ss_conf 7157654239999999997655467875567668998-67447995189999936777766566733012687624-889
Q ss_pred ECCCCCCC--CCCCCCCC--EE---------EECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEEEEEE--CCC
Q ss_conf 94313888--35844893--89---------605852123334899888886567875535-6677419999996--899
Q 003585 570 LHGLDHGN--KDLTWQKW--SY---------QVGLKGEAMNLVSPSEATSVDWTRGSLAAQ-GQQSLKWYKAYFD--APT 633 (809)
Q Consensus 570 L~g~~~g~--~dLs~~~W--~y---------~vgL~gE~~~l~~~~~~~~~~W~~~~~~~~-~~~~~twYkttF~--~p~ 633 (809)
|.+.+.+. ++|+.+.| +| ++||+||++++|+| +.+...|.+.+..+. ...+++|||++|+ +|+
T Consensus 787 L~g~~~~~~~w~l~g~~~ge~~~D~~RgplN~~GL~gE~~~w~~p-~~~~~~W~~~sp~~gl~~~Gv~wyr~~f~L~~p~ 865 (971)
T 1tg7_A 787 LSGQEASAISWKLTGNLGGENYRDTVRGPLNEGGLYAERQGFHQP-QPPTQKWDSSSPFTGLTKPGIRFYSTSFDLDLPS 865 (971)
T ss_dssp ETTSCGGGCEEEEESSTTTTSCSCTTTCSSSCCSSHHHHTTTTSS-SCCCTTSBCCCTTTCBSSSEEEEEEEEEECCCCT
T ss_pred EECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 964579874499850556655554334544544443422253279-9983466487876788888508999997456877
Q ss_pred CCC-CEEEEECCCC------EEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-CCC
Q ss_conf 999-6289508996------08999878220122203446987666667876775446788997101221486654-467
Q 003585 634 GNE-PLALDLRSMG------KGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWL-KPT 705 (809)
Q Consensus 634 g~d-pv~Ldl~gmg------KG~vwVNG~~iGRYWp~~~~g~~~~c~y~G~y~~~kc~t~cg~PqQtlYhVP~~~L-k~g 705 (809)
+.| |+.|+|.+|+ ||++||||++|||||+.+ | || |+||||++|| |+|
T Consensus 866 g~d~pl~L~lg~~~~~~~~~~~~~~VNG~~iGry~~~~-----------~-------------pq-r~y~VP~giLn~~G 920 (971)
T 1tg7_A 866 GYDIPLYFNFGNSTSTPAAYRVQLYVNGYQYGKYVNNI-----------G-------------PQ-TSFPVPEGILNYHG 920 (971)
T ss_dssp TEECCEEEEECCCCSSCCCEEEEEEETTEEEEEEETTT-----------C-------------SC-CEEEECBTTBCTTS
T ss_pred CCCCEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCC-----------C-------------CC-EEEECCHHHHCCCC
T ss_conf 89830899857888777563289999999874012788-----------7-------------87-79977979938699
Q ss_pred CCEEEE----EEECCCCCCCEEEEEEC
Q ss_conf 637988----75419997435998321
Q 003585 706 KNLLVV----FEELGGDASRISLVKRS 728 (809)
Q Consensus 706 ~N~LVi----fEe~gg~p~~I~~~t~~ 728 (809)
.|+|+| ||+.||+|.+|+|+++.
T Consensus 921 ~N~i~vrv~~~~~~Gg~~~~i~l~~~~ 947 (971)
T 1tg7_A 921 TNWLALSLWAQEDNGAKLDSFELINTT 947 (971)
T ss_dssp EEEEEEEEEECSTTCBCCSCEEEEECC
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEECC
T ss_conf 638999986277778986506999750
No 4
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=1.00 E-value=1 Score=1098.42 Aligned_cols=566 Identities=30% Similarity=0.558 Sum_probs=475.5
Q ss_pred CCCEEEEEECCCEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHH
Q ss_conf 33123998067199979796999998519999976899999999977998899821078779989413430620099999
Q 003585 24 IQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVRFI 103 (809)
Q Consensus 24 ~~~~~vt~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlNtV~tYvfWn~hEp~~G~ydF~G~~dl~~fl 103 (809)
....+|++|++.|++||||++++||++||+|+++++|+++|++||++|+|+|++||||+.|||+||+|||++..|+++|+
T Consensus 3 ~~~r~v~~~~~~f~lnGkp~~i~gg~~Hy~r~~~e~w~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G~ydf~gl~~l~~fl 82 (612)
T 3d3a_A 3 LSEGTFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKMCKALGMNTICLYVFWNFHEPEEGRYDFAGQKDIAAFC 82 (612)
T ss_dssp CCCCCEEECSSSEEETTEEECCEEEEECGGGSCGGGHHHHHHHHHHHTCCEEEEECCHHHHCSSTTCCCCSGGGCHHHHH
T ss_pred CCCCEEEEECCEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 66666998399999999899998888267669989999999999973998999727077328989834806898999999
Q ss_pred HHHHHCCCEEEECCCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCC
Q ss_conf 99998297999705841221028898880732259837523995569999999999999977053341369864974245
Q 003585 104 KTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIE 183 (809)
Q Consensus 104 ~la~~~GL~ViLR~GPYicaEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIE 183 (809)
++|+++||+||||+||||||||++||+|.||...+++.+|++|+.|++++++|+++|+++++ +++++|||||||||||
T Consensus 83 ~la~e~GL~VIl~~gpyi~~ew~~gG~P~Wl~~~~~~~~r~~dp~y~~~~~~~~~~l~~r~~--~~~~~n~p~II~wqIe 160 (612)
T 3d3a_A 83 RLAQENGMYVIVRPGPYVCAEWEMGGLPWWLLKKKDIKLREQDPYYMERVKLFLNEVGKQLA--DLQISKGGNIIMVQVE 160 (612)
T ss_dssp HHHHHTTCEEEEECCSCCCTTBGGGGCCGGGGGSTTCCSSSCCHHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEECS
T ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEEC
T ss_conf 99997799999956854466011489735422478833437998999999999999999874--1100069977787403
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEECCC-----CCCCCCCCCCCCCCC-----CCCC---CCCCCCC
Q ss_conf 565787645790139999999999870899-8452760788-----999643237788755-----7779---8999999
Q 003585 184 NEYGPESKSLGAAGHAYVNWAAKMAVGLDT-GVPWVMCKED-----DAPDPVINSCNGFYC-----DAFS---PNKPYKP 249 (809)
Q Consensus 184 NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~-~vP~~~c~~~-----~~p~~vi~t~ng~~~-----~~~~---~~~p~~P 249 (809)
||||++ + .+++|++++++++++.|+ +||+++|++. ...+.+++++| |.| +.|. +.+|++|
T Consensus 161 NEyg~y----g-~~~~y~~~l~~~l~~~g~~~vp~~~~~~~~~~~~~~~~~~~~t~n-f~s~~~~~~~~~~~~~~~p~~P 234 (612)
T 3d3a_A 161 NEYGAF----G-IDKPYISEIRDMVKQAGFTGVPLFQCDWNSNFENNALDDLLWTIN-FGTGANIDEQFKRLKELRPDTP 234 (612)
T ss_dssp SCGGGT----C-CCHHHHHHHHHHHHHHTCCSSCEEEEECTTTGGGTCCTTSEEEEE-EETTCCHHHHHHHHHHHCTTSC
T ss_pred CCCCCC----C-CHHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCC
T ss_conf 445655----7-659999999999987189960330004563222577787666455-6777217899999987455899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--C-C--CCCCCCCCCCCCCCC
Q ss_conf 2022125433455489877789788999999999809911122265327897877999--9-6--334576899888789
Q 003585 250 TLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGG--P-F--ITTSYDYDAPLDEYG 324 (809)
Q Consensus 250 ~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~s~~NyYM~hGGTNfG~~~G~--~-~--~~TSYDYdAPl~E~G 324 (809)
.|++|+|+|||++||++++.|++++++.++++++++|+| +||||||||||||+|+|+ + | ++|||||||||+|+|
T Consensus 235 ~~~~E~~~Gwf~~wg~~~~~~~~~~~~~~~~~~l~~g~s-~n~YM~hGGTNfG~~~ga~~~~~~~~~tSYDy~Apl~E~g 313 (612)
T 3d3a_A 235 LMCSEFWSGWFDHWGAKHETRSAEELVKGMKEMLDRNIS-FSLYMTHGGTSFGHWGGANFPNFSPTCTSYDYDAPINESG 313 (612)
T ss_dssp CEEEEEECSCCCBTTSCCCCCCHHHHHHHHHHHHTTTCE-EEEECSBCCBCCTTCBCEETTTTEEBCSBCCTTCSBCTTS
T ss_pred CEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 620023467650124777667999999999999986996-6863530134778566668877664145313687247578
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCEEEECCCCCEE
Q ss_conf 88852479999999999852112468999435789853102320497621235301577741189967824204997300
Q 003585 325 LMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSIS 404 (809)
Q Consensus 325 ~~~~pKy~~lr~l~~~i~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~lp~~svs 404 (809)
++ +|||.++|++|.. + +..+.+.. + |..+.+ .+.+|++++
T Consensus 314 ~~-~~ky~~lr~~~~~---~---~~~~~~~~-~-------------------~p~~~~------------~~~~~~~~~- 353 (612)
T 3d3a_A 314 KV-TPKYLEVRNLLGN---Y---LPEGETLP-E-------------------IPDSIP------------TIAIPTIKM- 353 (612)
T ss_dssp CC-CHHHHHHHHHHTT---S---SCTTCCCC-C-------------------CCCCCC------------BCCEEEEEC-
T ss_pred CC-CHHHHHHHHHHHH---H---CCCCCCCC-C-------------------CCCCCC------------CCCCCCEEE-
T ss_conf 73-2789999999998---5---34677767-7-------------------888876------------454565877-
Q ss_pred ECCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 04888710001422101010011135665556654433343346778754444201110788999557999998505898
Q 003585 405 ILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSS 484 (809)
Q Consensus 405 ilpdc~~v~~nta~v~~q~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~lEql~~t~d~sgYlwY~T~v~~~~~ 484 (809)
.++++ .|+.+.+++.+. .+.+|||++| .+||+||+|+++...
T Consensus 354 ---------~~~~~------------------l~~~~~~~~~~~-------~p~~~E~l~q---~~gy~lY~t~i~~~~- 395 (612)
T 3d3a_A 354 ---------TEMAV------------------LFDNLPHPKESE-------DIRTMEAFDQ---GWGSILYRTSLSASD- 395 (612)
T ss_dssp ---------CEEEE------------------GGGGCCCCEEES-------SCCBGGGGTC---CSSEEEEEEEECCBS-
T ss_pred ---------EEEEE------------------HHHHCCCCCCCC-------CCCCHHHHCC---CCCEEEEEEEECCCC-
T ss_conf ---------42615------------------888478863478-------9889999598---777599998854788-
Q ss_pred CCCCCCCCCCEEEECCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf 10015899770564684508999999999999974346740388611124689885999994479644557989555421
Q 003585 485 ESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGV 564 (809)
Q Consensus 485 ~~~~~~g~~~~L~v~~~~d~~~vfVNG~~vGs~~g~~~~~~~~~~~~i~l~~G~n~L~iL~en~G~~NyG~~~~~~~kGI 564 (809)
..++|++.+++|++||||||+++|++++......+.+ ++..|.|+|+||||||||+|||+++ .++|||
T Consensus 396 -------~~~~L~i~~~~D~a~Vfvng~~~G~~~~~~~~~~~~~----~~~~~~~~L~iLven~Gr~NyG~~~-~~~kGi 463 (612)
T 3d3a_A 396 -------KEQTLLITEAHDWAQVFLNGKKLATLSRLKGEGVVKL----PPLKEGDRLDILVEAMGRMNFGKGI-YDWKGI 463 (612)
T ss_dssp -------SCEEEEEEEEESEEEEEETTEEEEEEETTTTCCEEEE----CCBCTTEEEEEEEECCCCCCSGGGG-CCCCEE
T ss_pred -------CCCEEEECCCCEEEEEEECCEEEEEEECCCCCCEEEE----ECCCCCCEEEEEEEECCCCCCCCCC-CCCCCC
T ss_conf -------8754985478708999999999999981147726986----5378985899999956987668545-579877
Q ss_pred ECCEEECCCCCCCCCCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEC
Q ss_conf 0238994313888358448938-960585212333489988888656787553566774199999968999996289508
Q 003585 565 RGAVVLHGLDHGNKDLTWQKWS-YQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLR 643 (809)
Q Consensus 565 ~G~V~L~g~~~g~~dLs~~~W~-y~vgL~gE~~~l~~~~~~~~~~W~~~~~~~~~~~~~twYkttF~~p~g~dpv~Ldl~ 643 (809)
+|+|+|++ .+++.+|+ +|+ |+++|++|.. ..+.|..... . .++|+|||++|++|++.| |||||+
T Consensus 464 ~g~V~l~~-~~~~~~l~--~W~~y~l~l~~~~~--------~~~~~~~~~~--~-~~~p~~yk~~f~~~~~~D-t~Ld~~ 528 (612)
T 3d3a_A 464 TEKVELQS-DKGVELVK--DWQVYTIPVDYSFA--------RDKQYKQQEN--A-ENQPAYYRSTFNLNELGD-TFLNMM 528 (612)
T ss_dssp EEEEEEEE-TTEEEECC--CEEEEEECCCHHHH--------HSSCCBC--------CCCEEEEEEEEESSCCB-EEEECT
T ss_pred CCCEEECC-CCCCEECC--CCEEEEECCCCCCC--------CCCCCCCCCC--C-CCCCEEEEEEEECCCCCC-EEEECC
T ss_conf 76269858-86743436--86699834676422--------2355345677--7-889889999998899873-899657
Q ss_pred CCCEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCEE
Q ss_conf 99608999878220122203446987666667876775446788997101221486654467637988754199974359
Q 003585 644 SMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRIS 723 (809)
Q Consensus 644 gmgKG~vwVNG~~iGRYWp~~~~g~~~~c~y~G~y~~~kc~t~cg~PqQtlYhVP~~~Lk~g~N~LVifEe~gg~p~~I~ 723 (809)
|||||+|||||+||||||+ +| |||||| ||++|||+|+|+||||||+|..+..|+
T Consensus 529 g~gKG~vwVNG~nlGRYW~------------~G-------------PqqtlY-vP~~~Lk~g~N~ivvfE~~~~~~~~i~ 582 (612)
T 3d3a_A 529 NWSKGMVWVNGHAIGRYWE------------IG-------------PQQTLY-VPGCWLKKGENEIIILDMAGPSKAETE 582 (612)
T ss_dssp TCCEEEEEETTEEEEEEET------------TC-------------SCCEEE-ECGGGCCSEEEEEEEEESSCCSSSEEE
T ss_pred CCCCEEEEECCEEEEEEEE------------CC-------------CEEEEE-ECHHHCCCCCCEEEEEEECCCCCCEEE
T ss_conf 7873799998875890895------------29-------------889988-158991789748999997689885488
Q ss_pred EEEECH
Q ss_conf 983212
Q 003585 724 LVKRSV 729 (809)
Q Consensus 724 ~~t~~~ 729 (809)
|.+..+
T Consensus 583 ~~~~p~ 588 (612)
T 3d3a_A 583 GLRQPI 588 (612)
T ss_dssp EESSCC
T ss_pred EECCCC
T ss_conf 546655
No 5
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Probab=1.00 E-value=1 Score=964.89 Aligned_cols=660 Identities=24% Similarity=0.377 Sum_probs=473.0
Q ss_pred CCCCEEEEEECCCEEECCEEEEEEEEEECCCCCC-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCHHHH
Q ss_conf 2331239980671999797969999985199999-768999999999779988998210787799894134306200999
Q 003585 23 LIQCSTVTYDRKAILINGQRRILISGSIHYPRST-PEMWEDLIRKAKDGGLDVIDTYVFWNGHEPSPGHYNFEGSYDLVR 101 (809)
Q Consensus 23 ~~~~~~vt~d~~~~~idG~~~~l~sG~iHy~R~~-~e~W~~~l~k~Ka~GlNtV~tYvfWn~hEp~~G~ydF~G~~dl~~ 101 (809)
...+..|+||+++|+|||||++++||+|||+|+| |++|+|+|+|||++|+|||++|||||+|||+||+|||+|++||++
T Consensus 20 ~~~~~~v~~d~~~~~idG~p~~i~sGeiHy~R~p~pe~W~d~l~kmKa~GlNtV~tYV~Wn~hEP~eG~fdFsg~~dL~~ 99 (1003)
T 3og2_A 20 GPLQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEP 99 (1003)
T ss_dssp SCSSSSEEECSSCEEETTEEECEEEEEECGGGCCCGGGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHH
T ss_pred CCCCCEEEECCCEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCEECCCCHHHHHH
T ss_conf 67761699818869999979899999888755998899999999999739988998516443489788735555555999
Q ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEC
Q ss_conf 99999982979997058412210288988807322598375239955699999999999999770533413698649742
Q 003585 102 FIKTVQRVGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQ 181 (809)
Q Consensus 102 fl~la~~~GL~ViLR~GPYicaEw~~GG~P~WL~~~p~~~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~Q 181 (809)
||++|+++||+|||||||||||||++||+|.||++.|+ ++|++|+.|++++++|+++|+++++ ++++++||||||+|
T Consensus 100 fl~la~e~GL~VILRpGPYi~aEw~~GG~P~WL~~~~~-~lRt~~p~yl~~~~~~~~~l~~~~~--~~~~~~GGpII~~Q 176 (1003)
T 3og2_A 100 FFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAPDYLHATDNYVAHIASIIA--KAQITNGGPVILYQ 176 (1003)
T ss_dssp HHHHHHHHTCEEEEEEESCCCTTBGGGGCCGGGGGCCS-CTTSCCHHHHHHHHHHHHHHHHHHH--HTBGGGTSSEEEEE
T ss_pred HHHHHHHCCCEEEECCCCCEEEECCCCCCCCHHCCCCC-EECCCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEE
T ss_conf 99999985998993278633335278876621025997-0057998999999999999999987--76423799789997
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC----CCCCCCCCC---------CCCCCCCCC-------
Q ss_conf 455657876457901399999999998708998452760788----999643237---------788755777-------
Q 003585 182 IENEYGPESKSLGAAGHAYVNWAAKMAVGLDTGVPWVMCKED----DAPDPVINS---------CNGFYCDAF------- 241 (809)
Q Consensus 182 IENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vP~~~c~~~----~~p~~vi~t---------~ng~~~~~~------- 241 (809)
||||||++.+.++.++++||+||++|+++.|++|||+||++. .+|+.++.+ +++++|+++
T Consensus 177 VENEYG~~~~~~~~~d~~Ym~~L~~~~~~~Gi~VPl~t~d~~~~~~~~~g~~~g~vdiyg~d~yp~g~~c~~~~~w~~~~ 256 (1003)
T 3og2_A 177 PENEYSGAAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNG 256 (1003)
T ss_dssp ESSCCCCBCTTSCSSCHHHHHHHHHHHHHTTCCSCBBCCBSSSCCTTCTTSCTTCCSBCEEEECTTCSCTTSTTCCCTTC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 24545753344567778999999999997499367997688522465777655513330245666743036876555554
Q ss_pred ---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----HHHHCCCEEEEEEEECCCCCCCCCCC
Q ss_conf ---------9899999920221254334554898777897889999999-----99809911122265327897877999
Q 003585 242 ---------SPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVAR-----FIQKGGSFFNYYMYHGGTNFGRTAGG 307 (809)
Q Consensus 242 ---------~~~~p~~P~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~~-----~~~~g~s~~NyYM~hGGTNfG~~~G~ 307 (809)
.+.+|++|+||+|||+|||++||+++++|++++++.++++ +++.|+|++||||||||||||+|+ +
T Consensus 257 ~~~~~~~~~~~~~p~~P~~~~Ef~~GWfd~WG~~~~~~~~~~~~~~~~~~~~~~~l~~G~s~vN~YM~hGGTNFG~~~-~ 335 (1003)
T 3og2_A 257 LPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWGNLG-H 335 (1003)
T ss_dssp SCCCHHHHHHHHCTTSCCEEEEEESSCCCCTTCCCHHHHHHHSSHHHHHHHHHHHHHTTCSEEEEEEEECCBCCTTCB-C
T ss_pred CHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-C
T ss_conf 157799876512899982887001433343588877777334059999999999885688557888721646865357-9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCEEEEE--CCCCCEEEEEECCC
Q ss_conf 96334576899888789888524799999999998521124689994357---89853102320--49762123530157
Q 003585 308 PFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTS---LGTYQQAHVFS--AGQQKCAAFLSNYN 382 (809)
Q Consensus 308 ~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i~~~~~~l~~~~~~~~~---~g~~~~~~~~~--~~~~~~~~Fl~n~~ 382 (809)
+.++|||||||||+|+|++++|||.+||.+|.|++.+.. ++..+|...+ ...+....++. ...+..+-|+.+.+
T Consensus 336 ~~~~TSYDYdAPL~E~G~~~t~Ky~~lK~l~~fl~~~~~-~l~~~~~~~~~~~~~~~~~i~~t~lr~~~~~~Fyvvrh~~ 414 (1003)
T 3og2_A 336 PGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSPG-YITATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHAN 414 (1003)
T ss_dssp TTSCSBCCTTCSBCTTCCCCSHHHHHHHHHHHHHHTCTH-HHHSEECCCBSSSSSSCSSEEEEEEECSSSCEEEEEEESS
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHH-HHCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCC
T ss_conf 984133467884464677583478999999998753837-6455646588761348986389998648985599998157
Q ss_pred CC----CCEEEEEC--CEEEECC---------CCCEEECCC-----CCCEECCCCEE-----------------------
Q ss_conf 77----41189967--8242049---------973000488-----87100014221-----------------------
Q 003585 383 TK----SAARVTFN--GRQYNLP---------PWSISILPD-----CKNVVFNTAKV----------------------- 419 (809)
Q Consensus 383 ~~----~~~~v~~~--~~~~~lp---------~~svsilpd-----c~~v~~nta~v----------------------- 419 (809)
.. ...+++.. ...+++| .....|++- ..+++|.||+|
T Consensus 415 ~~s~~~~~~~l~l~ts~G~~tiP~~~g~ltL~grdskI~vtdy~~g~~~L~YSTAevlT~~~~~~~~vlvlyg~~Ge~~E 494 (1003)
T 3og2_A 415 YSSTDTASYTVKLPTSAGDLTIPQLGGSLTLTGRDSKIHVTDYPVGKFTLLYSTAEIFTWNEFAEKTVLVLYGGAQELHE 494 (1003)
T ss_dssp TTCCSCEEECEEECCTTCCEEECTTSCCEEECTTCEEEEEEEEEETTEEEEEESSEEEEEEECSSCEEEEEEECTTCEEE
T ss_pred CCCCCCCEEEEEECCCCCCEEECCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCEEEEEEECCCCCCEE
T ss_conf 88777612899942788767867889727888865559850132488489997241178899899889999788998348
Q ss_pred -----------------------------------EE-EC----------------------------------------
Q ss_conf -----------------------------------01-01----------------------------------------
Q 003585 420 -----------------------------------AV-QH---------------------------------------- 423 (809)
Q Consensus 420 -----------------------------------~~-q~---------------------------------------- 423 (809)
+- +.
T Consensus 495 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~l~v~l~dr~~A~~~W~~~~~~~~~~~~~~~ 574 (1003)
T 3og2_A 495 FAVKNPFGSSKTAKAKKIEGSNVTIHTTSNLTVVLQWTASSARQVVQLGSLVIYMVDRNSAYNYWVPTLPGSGKQSAYGS 574 (1003)
T ss_dssp EEESCCSTTCSSCCCEEEECSSCEEEECTTCCEEEEEECCSSCEEEEETTEEEEEEEHHHHTTEECCBCCCSSTTGGGCS
T ss_pred EEEECCCCCCCCCCCCEECCCCEEEEECCCCEEEEEEECCCCEEEEEECCEEEEEEEHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99933444456788736427870587468958999885379649999799999997068876413553468876454345
Q ss_pred ------CC--------CC----------------------C-CCC----------------------------------C
Q ss_conf ------00--------11----------------------1-356----------------------------------6
Q 003585 424 ------TK--------MQ----------------------M-LPT----------------------------------G 432 (809)
Q Consensus 424 ------~~--------~~----------------------~-~~~----------------------------------~ 432 (809)
++ |+ + .+. .
T Consensus 575 ~~~~~~~vlV~g~yLvRsA~~~g~~l~l~GD~~~tt~lev~~~p~~v~~v~wNG~~~~~~~~~~g~~~~~~~~~~~~i~l 654 (1003)
T 3og2_A 575 SLMNPDSVIINGGYLIRSVAIKGNALSVQADFNVTTPLEIIGIPKGISKLAVNGKELGYSVSELGDWIAHPAIEIPHVQV 654 (1003)
T ss_dssp CSSSCCBCEEECCSEEEEEEEETTEEEEEEEBSSCCCEEEESCCTTCCEEEETTEEECCEECTTSCEEECCCCCCCCCCC
T ss_pred CCCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCCEEEEEECCCCCCEEEECCEECEEEECCCCCEEEEECCCCCCCCC
T ss_conf 67888728997883799989719999998435898137999368775489999998514863787579983277876548
Q ss_pred C--CCCCCCC---CCCCCCCC-----C-C-C-C------CCCCCC--HHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCC
Q ss_conf 5--5566544---33343346-----7-7-8-7------544442--011107889995579999985058981001589
Q 003585 433 S--KLLSWET---YDEDISSL-----G-E-S-S------TLTAIG--LLEQINITRDTSDYLWYMTSVEISSSESFLRGG 491 (809)
Q Consensus 433 ~--~~~~w~~---~~e~~~~~-----~-~-~-~------~~~~~~--~lEql~~t~d~sgYlwY~T~v~~~~~~~~~~~g 491 (809)
+ ..+.|.. ++|-.+.. . . . . |.+.|. -..+++. ++|.+|||.+|+....+
T Consensus 655 P~L~~l~Wk~~dslPE~~~~ydDs~W~~A~~~~t~n~~~p~~~p~~Lya~dYGf---h~G~~wYRG~F~a~~~~------ 725 (1003)
T 3og2_A 655 PELTKLKWYKVDSLPEIRSNYDDSRWPLANLRTSNNTYAPLKTPVSLYGSDYGF---HAGTLLFRGRFTARTAR------ 725 (1003)
T ss_dssp CCGGGSCCEEEESCGGGSTTCCCTTSCBCCCSCCCCSSSCCCSSSCCBGGGGTC---CSSCEEEEEEEECSSSS------
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCC---CCCCEEEEEEEECCCCC------
T ss_conf 877888714227886568999843260667656568556789984757645676---44878986189778871------
Q ss_pred CCCEEEECC-CCEEEEEEECCEEEEEEECCCCC--CEEEEEECCCCCCC-CCEEEEEEECCCCC-CC--CCCCCCCCCCE
Q ss_conf 977056468-45089999999999999743467--40388611124689-88599999447964-45--57989555421
Q 003585 492 QKPTLTVES-AGHAVHVFINGQFLGSAFGTREN--RRFTFSGPANLRAG-INKIALLSIAVGLP-NV--GLHYETWETGV 564 (809)
Q Consensus 492 ~~~~L~v~~-~~d~~~vfVNG~~vGs~~g~~~~--~~~~~~~~i~l~~G-~n~L~iL~en~G~~-Ny--G~~~~~~~kGI 564 (809)
+...|.+++ .+-...|||||+|+|+..|.... .+++|.+| .|+.| +|+|+++++|||+. ++ |..-.+.++||
T Consensus 726 ~~v~L~~~GG~af~~sVWLNG~flGs~~g~g~~~~~~~~~~lP-~L~~g~~NVLtV~vDn~G~d~~w~~G~d~~k~PRGi 804 (1003)
T 3og2_A 726 QQLFLSTQGGSAFASSVWLNDRFIGSFTGFDAASAANSSYTLD-RLVRGRRYILTVVVDSTGLDENWTTGDDSMKAPRGI 804 (1003)
T ss_dssp EEEEEEEECSTTCCEEEEETTEEEEEECCCTTCSEEEEEEEEC-SCCTTCEEEEEEEECCCCCCCCCSBTCCGGGCCCEE
T ss_pred EEEEEEECCCCCCCCEEEECCEEECCCCCCCCCCCCCEEEECC-CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 4899998151243448999997822554788656566699787-556799608999992887655646675544488750
Q ss_pred ECCEEECCCCCCCCCCCCCCCEEEE------------------CCCCCCCCCCCCCCCCCCCCCCC--------CCCC-C
Q ss_conf 0238994313888358448938960------------------58521233348998888865678--------7553-5
Q 003585 565 RGAVVLHGLDHGNKDLTWQKWSYQV------------------GLKGEAMNLVSPSEATSVDWTRG--------SLAA-Q 617 (809)
Q Consensus 565 ~G~V~L~g~~~g~~dLs~~~W~y~v------------------gL~gE~~~l~~~~~~~~~~W~~~--------~~~~-~ 617 (809)
++ ..|.|.....+++ .|+.+. ||.+|+.++|+|. .+...|.+. +... .
T Consensus 805 ~~-~~l~g~~~~~~~~---~Wki~Gn~GGe~~~D~vRGplNeGGly~ER~GwHLPg-~~~~~W~~~~~~~~~~~sp~~g~ 879 (1003)
T 3og2_A 805 LD-YALTSSSGANVSI---SWKLTGNLGGEDYRDVFRGPLNEGGLFFERQGFHLPS-PPLSDFTHGPSSSSSSSSPLDGI 879 (1003)
T ss_dssp EE-EEEEETTSCBCCC---EEEEESSTTTTSCSCTTTCSSSCCSSHHHHHTTTSSS-CCGGGSBCCCTTSTTCCCTTTCB
T ss_pred EE-EECCCCCCCCCCC---EEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 00-0523788776630---5898413588656786656655886557741323898-89432332444544567845577
Q ss_pred CCCCCEEEEEEEEC--C-CCCC-CEEEEECCC-----CEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66774199999968--9-9999-628950899-----6089998782201222034469876666678767754467889
Q 003585 618 GQQSLKWYKAYFDA--P-TGNE-PLALDLRSM-----GKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCG 688 (809)
Q Consensus 618 ~~~~~twYkttF~~--p-~g~d-pv~Ldl~gm-----gKG~vwVNG~~iGRYWp~~~~g~~~~c~y~G~y~~~kc~t~cg 688 (809)
.....+||+|+|++ | ++.| |+.+.+..- -+-++||||+++|||-+. +|
T Consensus 880 ~~~Gv~fyrt~f~LdlP~~g~Dvpl~~~f~~~~~~~~yRa~lfVNG~q~Gkyv~~-----------iG------------ 936 (1003)
T 3og2_A 880 AHAGIAFYAAKLPLHLPAQEYDIPLSFVFDNATAAAPYRALLYVNGFQYGKYVSN-----------IG------------ 936 (1003)
T ss_dssp SSSEEEEEEEEEEEECCTTTEECCEEEEECCCSSCCCEEEEEEETTEEEEEEETT-----------TC------------
T ss_pred CCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECEEEEEECCC-----------CC------------
T ss_conf 8884579987852689965671038999777988763589999702021022178-----------78------------
Q ss_pred CCCEEEEECCCCCCC-CCCCEEEE----EEECCCCCCCEEEEEE
Q ss_conf 971012214866544-67637988----7541999743599832
Q 003585 689 HPTQRWYHVPRSWLK-PTKNLLVV----FEELGGDASRISLVKR 727 (809)
Q Consensus 689 ~PqQtlYhVP~~~Lk-~g~N~LVi----fEe~gg~p~~I~~~t~ 727 (809)
||.+ |+||..+|+ .|.|+|.| +|+.|+.+..++++..
T Consensus 937 -PQt~-FpvP~GILn~~G~NtialalWa~~~~ga~~~~~~L~~~ 978 (1003)
T 3og2_A 937 -PQTE-FPVPEGILDYNGDNWIGVALWALESRGAKVPGLALKSK 978 (1003)
T ss_dssp -CCCE-EEECBTTBCTEEEEEEEEEEEECSTTCBCCSCEEEEEC
T ss_pred -CCCE-ECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEC
T ss_conf -8603-05992011279962699999842688887771599974
No 6
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Probab=1.00 E-value=1 Score=315.01 Aligned_cols=186 Identities=16% Similarity=0.223 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHCC-----CCCEEEEEECCCEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 999999999984102-----331239980671999797969999985199999768999999999779988998210787
Q 003585 9 LLTWLWMALLLGTEL-----IQCSTVTYDRKAILINGQRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNG 83 (809)
Q Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~vt~d~~~~~idG~~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlNtV~tYvfWn~ 83 (809)
|+.++++|++....+ .....++.++.+|++||||++++||++|+++..++.+++++++||++|+|+|++||+|+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~f~lnGkPf~i~gg~~H~~~~y~r~~~~~W~~mKa~G~NtVr~~V~W~~ 98 (552)
T 3u7v_A 19 LALALVCGPLASGAHAADAAMPQLVTKDGRHALMVDGAPFLMLAAQVNNSSAWPSQMAKVWPAIEKVGANTVQVPIAWEQ 98 (552)
T ss_dssp -----------------CCCCCEEEEETTEEEEEETTEEECEEEEECCTTCCSGGGHHHHHHHHHHHTCSEEEEEEEHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHC
T ss_conf 99999960000013455456982999789688989998999998870798886331199999999809988999862432
Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC---CCEEECCCCCE--EEECCC-----------H
Q ss_conf 7998941343062009999999998297999705841221028898---88073225983--752399-----------5
Q 003585 84 HEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEWNFGG---FPVWLKYVPGI--SFRTDN-----------G 147 (809)
Q Consensus 84 hEp~~G~ydF~G~~dl~~fl~la~~~GL~ViLR~GPYicaEw~~GG---~P~WL~~~p~~--~~Rt~~-----------~ 147 (809)
|||+||+|||+ .|++||++|+++||+|||| ||+||++|| +|.||.++|++ ++|+.| +
T Consensus 99 hEP~~G~yDF~---~LD~~ldla~e~GL~VIL~----i~aeW~~ggta~~P~WL~~d~~~~P~vrt~dG~~~~~~sp~~p 171 (552)
T 3u7v_A 99 IEPVEGQFDFS---YLDLLLEQARERKVRLVLL----WFGTWKNSSPSYAPEWVKLDDKRFPRLIKDDGERSYSMSPLAK 171 (552)
T ss_dssp HCSBTTBCCCH---HHHHHHHHHHHTTCEEEEE----EEEEEETTBCTTSCHHHHTCTTTSCEEECTTSCEEEEECTTCH
T ss_pred CCCCCCCCCHH---HHHHHHHHHHHCCCEEEEE----ECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCEEECCCCCCH
T ss_conf 48989846806---4999999999879999998----4120146887678805651766575248899967514798867
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 56999999999999997705334136986497424556578764579013999999999987
Q 003585 148 PFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKMAV 209 (809)
Q Consensus 148 ~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~~~ 209 (809)
.|++++++|+++|+++++ +.+ .+||||||||||||||++. +++.|++.+++.++
T Consensus 172 ~yl~a~r~~~~~l~~~La--~r~-~~~p~VI~wQIeNEyG~~g-----~~~~Y~~~~~~aFR 225 (552)
T 3u7v_A 172 STLDADRKAFVALMTHLK--AKD-AAQKTVIMVQVENETGTYG-----SVRDFGPAAQKVFN 225 (552)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHH-TTTCCEEEEEEEESCSBSS-----CSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHH-CCCCCEEEEEECCCCCCCC-----CCCHHHHHHHHHHH
T ss_conf 899999999999999999--971-8999489999615677777-----73215199999999
No 7
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=1.00 E-value=1 Score=217.01 Aligned_cols=240 Identities=13% Similarity=0.122 Sum_probs=160.2
Q ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCEEEECCCCHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 79699999851999997689999999997799889982107877998-94134306200999999999829799970584
Q 003585 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYVFWNGHEPS-PGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 41 ~~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlNtV~tYvfWn~hEp~-~G~ydF~G~~dl~~fl~la~~~GL~ViLR~GP 119 (809)
..++++.++.+....+++.|+++|++||++|+|+|+++|.|+.|||+ ||+|||+ .++++|++|+++||+||+++++
T Consensus 12 ~~~vmlp~~~v~~~~~~~~w~~dl~~mk~~Gln~Vr~~V~W~~iEP~g~G~ydf~---~~d~~id~a~~~GL~viv~L~~ 88 (516)
T 1vem_A 12 KAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFS---YAQRFAQSVKNAGMKMIPIIST 88 (516)
T ss_dssp EEEEECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCH---HHHHHHHHHHHTTCEEEEEEEC
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCHH---HHHHHHHHHHHCCCEEEEEECC
T ss_conf 7499805655289999999999999999739999998423454138899936369---9999999999779989999311
Q ss_pred CCCCC----CCCCCCCEEECCC-C--CEEEECCC----HHH-----HHHHHHHHHHHHHHHHCCCCCCCCCCCEEE----
Q ss_conf 12210----2889888073225-9--83752399----556-----999999999999997705334136986497----
Q 003585 120 YVCAE----WNFGGFPVWLKYV-P--GISFRTDN----GPF-----KVAMQGFTQKIVQMMKNEKLFASQGGPIIL---- 179 (809)
Q Consensus 120 YicaE----w~~GG~P~WL~~~-p--~~~~Rt~~----~~y-----~~~~~~~~~~i~~~i~~~~l~~~~gGpII~---- 179 (809)
|+|+| |.++++|.||.+. | ++.+++.+ +.+ -......+.++++.++ +.+..+ ++||+
T Consensus 89 h~c~g~~g~~~~~~lP~WL~~~~p~~di~~~d~~G~~~~~~~~~~~~~~~~~~y~~~~~~la--~r~~~~-~~vI~eI~v 165 (516)
T 1vem_A 89 HQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVIRKEYGELYTAFA--AAMKPY-KDVIAKIYL 165 (516)
T ss_dssp SCBSSSTTCCCCBCCCGGGGGGCSSSCSSEECTTCCEECSSCCTTCHHHHHHHHHHHHHHHH--HHTGGG-GGGBCCEEE
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHHCCC-CCEEEEEEC
T ss_conf 01377767787789997787259964326688999898453542346763899999999999--997438-998999622
Q ss_pred ------------ECCCCCCCCCCC----CCCC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------424556578764----5790-13999999999987089984527607889996432377887557779
Q 003585 180 ------------SQIENEYGPESK----SLGA-AGHAYVNWAAKMAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFS 242 (809)
Q Consensus 180 ------------~QIENEyg~~~~----~~~~-~~~~y~~~l~~~~~~~g~~vP~~~c~~~~~p~~vi~t~ng~~~~~~~ 242 (809)
+|||||||..+. +|.. +.+.+.+|+++.+ | +++-. .....+ . ...|.
T Consensus 166 glG~~GelryPs~qv~NE~g~~g~~~~~~y~~~~~~~fr~~l~~~y---g-tl~~l--------n~aWg~--~--~~~~~ 229 (516)
T 1vem_A 166 SGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKY---G-SLNEV--------NKAWGT--K--LISEL 229 (516)
T ss_dssp CCSGGGBSSCCCCCTTTTCCTTSCCCCCCCSHHHHHHHHHHHHHHH---S-SHHHH--------HHHHTC--C--CSSGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHC---C-CHHHH--------HHHHCC--C--CCCHH
T ss_conf 4553454356554333576787765420048999999999999862---8-77778--------897687--9--78898
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE------EEEEEEECCCCCCCC
Q ss_conf 89-999992022125433455489877789788999999999809911------122265327897877
Q 003585 243 PN-KPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSF------FNYYMYHGGTNFGRT 304 (809)
Q Consensus 243 ~~-~p~~P~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~s~------~NyYM~hGGTNfG~~ 304 (809)
.. .|..+ ..+++.||+++||.......++.++....++++.+.++ +.+..--.|.+|-..
T Consensus 230 ~i~~P~~~--~~~~~~gw~s~~~~df~~f~s~~l~~~~~~~l~~a~~~f~~~~~~~~~~kv~g~hw~y~ 296 (516)
T 1vem_A 230 AILPPSDG--EQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN 296 (516)
T ss_dssp GCCSCSCH--HHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTT
T ss_pred HHCCCCCC--CCCCCCCCHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEECCC
T ss_conf 82786556--54357983366507298856378999999999987875488768428998474201688
No 8
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=1.00 E-value=1 Score=213.47 Aligned_cols=286 Identities=16% Similarity=0.218 Sum_probs=191.8
Q ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 796999998519999976899999999977998899821-0787799894134306200999999999829799970584
Q 003585 41 QRRILISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYV-FWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGP 119 (809)
Q Consensus 41 ~~~~l~sG~iHy~R~~~e~W~~~l~k~Ka~GlNtV~tYv-fWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~ViLR~GP 119 (809)
.+.++++|++|+.+++++.|+++|++||++|+|+|++++ .|+.+||++|+|||+ +|+++|++|+++||+|||++++
T Consensus 6 ~~~~~~G~~y~pe~w~~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~g~~~f~---~ld~~i~~~~~~Gi~vil~~~~ 82 (675)
T 3tty_A 6 FPKIWYGGDYNPEQWDKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEVSYDFT---WLDDIIERLTKENIYLCLATST 82 (675)
T ss_dssp SCSCEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSSSCBCCH---HHHHHHHHHHHTTCEEEEECCT
T ss_pred CCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCCHH---HHHHHHHHHHHCCCEEEEECCC
T ss_conf 8876570057916499899999999999739988999411244218769863889---9999999999879999996787
Q ss_pred CCCCCCCCCCCCEEECCCC-CE--------EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 1221028898880732259-83--------75239955699999999999999770533413698649742455657876
Q 003585 120 YVCAEWNFGGFPVWLKYVP-GI--------SFRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEYGPES 190 (809)
Q Consensus 120 YicaEw~~GG~P~WL~~~p-~~--------~~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEyg~~~ 190 (809)
+.+.+|-....|.||..++ |. ..+.++|.|++++++++++|++++++ +++||+|||+|||+..
T Consensus 83 ~~~P~Wl~~~~Pe~l~~d~~G~~~~~g~r~~~~~~~p~~~~~~~~~~~~l~~ry~~-------~p~Vi~w~v~NE~g~~- 154 (675)
T 3tty_A 83 GAHPAWMAKKYPDVLRVDYEGRKRKFGGRHNSCPNSPTYRKYAKILAGKLAERYKD-------HPQIVMWHVSNEYGGY- 154 (675)
T ss_dssp TSCCHHHHHHCGGGBCBCTTSCBCCSCSSSCBCTTCHHHHHHHHHHHHHHHHHTTT-------CTTEEEEECSSSCCCC-
T ss_pred CCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-------CCCEEEEEECCCCCCC-
T ss_conf 77873344338751566689968036875678999999999999999999997388-------9968999975666787-
Q ss_pred CCCCCCHHHHHHHHHHHHHCC-------CC-------------CCCEE---------EECC---CC--------------
Q ss_conf 457901399999999998708-------99-------------84527---------6078---89--------------
Q 003585 191 KSLGAAGHAYVNWAAKMAVGL-------DT-------------GVPWV---------MCKE---DD-------------- 224 (809)
Q Consensus 191 ~~~~~~~~~y~~~l~~~~~~~-------g~-------------~vP~~---------~c~~---~~-------------- 224 (809)
+.+..+.++|.+||++++..+ |+ ..|-. .... .|
T Consensus 155 ~y~~~~~~~Fr~wLk~kY~ti~~LN~aWgt~fWs~~y~~w~ei~~P~~~~~~~~~~~~~~p~~~lD~~rF~~~~~~~~~~ 234 (675)
T 3tty_A 155 CYCDNCEKQFRVWLKERYGTLEALNKAWNTSFWSHTFYDWDEIVAPNALSEEWSGNRTNFQGISLDYRRFQSDSLLECFK 234 (675)
T ss_dssp CCSHHHHHHHHHHHHHHHSSHHHHHHHTTTTGGGCCCSSGGGCCCCSTTTTEETTTEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 68989999999999988657999999867552357557798716985656554445667858999999999999999999
Q ss_pred ---------CCC-CCC-CCCC---CCC-------C-----CCCC-----------------CCCCCCCCCCCCCCCCCCC
Q ss_conf ---------996-432-3778---875-------5-----7779-----------------8999999202212543345
Q 003585 225 ---------APD-PVI-NSCN---GFY-------C-----DAFS-----------------PNKPYKPTLWTEAWSGWFT 261 (809)
Q Consensus 225 ---------~p~-~vi-~t~n---g~~-------~-----~~~~-----------------~~~p~~P~~~tE~~~GWf~ 261 (809)
.|+ +|. |... +.+ + |.+. .....+|.+.+|..+| ..
T Consensus 235 ~~~d~iR~~~P~~pvt~N~~~~~~~~D~~~~a~~~Dvvs~D~Yp~~~~~~~~~a~~~dl~R~~~~g~p~~~mE~~~~-~~ 313 (675)
T 3tty_A 235 MERDELKRWTPDIPVTTNLMGFYPELDYFKWAKEMDVVSWDNYPSMDTPFSFTAMAHNLMRGLKSGQPFMLMEQTPG-VQ 313 (675)
T ss_dssp HHHHHHHHHCTTSCEECEECTTCTTSCHHHHHTTCSSCEEECCCCTTSCHHHHHHHHHHHHHTTTTCCEEEEECCSS-CC
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC-CC
T ss_conf 99999997589987797626566776999996159899977888867888899989988876047998699657778-88
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 54898777897889999999998099111222653278978779999633457689988878988852479999999999
Q 003585 262 EFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAI 341 (809)
Q Consensus 262 ~wG~~~~~r~~ed~a~~v~~~~~~g~s~~NyYM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G~~~~pKy~~lr~l~~~i 341 (809)
.|..-.....+..+....-..++.|+..+.|+-++...+ -.-.| -.|.|+-.|.++++.|..++++...+
T Consensus 314 ~w~~~~~~~~pg~~r~~~~~~~A~Ga~~v~~f~wr~~~~---------g~E~~-h~g~~~~~g~~~~r~~~ev~~~~~~l 383 (675)
T 3tty_A 314 NWQPYNSAKRPGVMRLWSYQAVAHGADTVMFFQLRRSVG---------ACEKY-HGAVIEHVGHEHTRVFRECAELGKEL 383 (675)
T ss_dssp TTSSBCCCCCTTHHHHHHHHHHHTTEEEEEESCSBCCCS---------GGGTT-SCCSBCTTCSSCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC---------CHHHH-HCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 885778889950999999999856257676341168888---------55665-02645878998846999999999999
Q ss_pred HHHHCCC
Q ss_conf 8521124
Q 003585 342 KLCEYAL 348 (809)
Q Consensus 342 ~~~~~~l 348 (809)
+..++.+
T Consensus 384 ~~l~~~~ 390 (675)
T 3tty_A 384 QQLGDTI 390 (675)
T ss_dssp HHHTTTT
T ss_pred HHHHHHH
T ss_conf 9756664
No 9
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=1.00 E-value=1 Score=205.21 Aligned_cols=271 Identities=14% Similarity=0.168 Sum_probs=187.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCC
Q ss_conf 99998519999976899999999977998899821-07877998941343062009999999998297999705841221
Q 003585 45 LISGSIHYPRSTPEMWEDLIRKAKDGGLDVIDTYV-FWNGHEPSPGHYNFEGSYDLVRFIKTVQRVGLYAHLRIGPYVCA 123 (809)
Q Consensus 45 l~sG~iHy~R~~~e~W~~~l~k~Ka~GlNtV~tYv-fWn~hEp~~G~ydF~G~~dl~~fl~la~~~GL~ViLR~GPYica 123 (809)
++++++|+.+++++.|++++++||++|+|+|++++ .|+.+||+||+|||+ +|+++|++|+++||+||+++.
T Consensus 1 ~~G~~y~pe~w~~~~~~~dl~~mk~~G~N~vR~~if~W~~~eP~~g~~d~~---~ld~~ld~a~~~Gi~vil~~~----- 72 (645)
T 1kwg_A 1 MLGVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWG---WLDEAIATLAAEGLKVVLGTP----- 72 (645)
T ss_dssp CEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCH---HHHHHHHHHHTTTCEEEEECS-----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHHCCCCCCCCCHH---HHHHHHHHHHHCCCEEEEECC-----
T ss_conf 977767966589789999999999829988999245142048889945869---999999999978998999589-----
Q ss_pred CCCCCCCCEEECC-CCCEE----------------EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCC
Q ss_conf 0288988807322-59837----------------523995569999999999999977053341369864974245565
Q 003585 124 EWNFGGFPVWLKY-VPGIS----------------FRTDNGPFKVAMQGFTQKIVQMMKNEKLFASQGGPIILSQIENEY 186 (809)
Q Consensus 124 Ew~~GG~P~WL~~-~p~~~----------------~Rt~~~~y~~~~~~~~~~i~~~i~~~~l~~~~gGpII~~QIENEy 186 (809)
.+++|.|+.. .|+.. ...+++.|++++++++++|+++++++ +.||+|||+||+
T Consensus 73 ---~~~~P~Wl~~~~P~~~~~~~~G~~~~~g~r~~~~~~~p~~~~~~~~~~~~l~~ry~~~-------p~V~~w~i~NE~ 142 (645)
T 1kwg_A 73 ---TATPPKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAERYGGL-------EAVAGFQTDNEY 142 (645)
T ss_dssp ---TTSCCHHHHHHCGGGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTC-------TTEEEEECSSST
T ss_pred ---CCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-------CCEEEEEECCCC
T ss_conf ---8889856762598526667998676667645679999999999999999999985999-------818999936867
Q ss_pred CCCC--CCCC-CCHHHHHHHH-----------------------------------------------------------
Q ss_conf 7876--4579-0139999999-----------------------------------------------------------
Q 003585 187 GPES--KSLG-AAGHAYVNWA----------------------------------------------------------- 204 (809)
Q Consensus 187 g~~~--~~~~-~~~~~y~~~l----------------------------------------------------------- 204 (809)
+... .+|. .+.++|.+||
T Consensus 143 ~~~~~~~~y~~~~~~~f~~wL~~~y~~i~~ln~awgt~fws~~~~~w~~i~~P~~~~~~~~~~~~~d~~~F~~~~~~~~~ 222 (645)
T 1kwg_A 143 GCHDTVRCYCPRCQEAFRGWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQVRAFN 222 (645)
T ss_dssp TTTTTSCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGGCCCSSGGGCCCSCSCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 77878886899999999999998866999999875745234555768554898766777884788889999999999999
Q ss_pred ---HHHHHCCCCCCCEEEECCCC--CCC-----CCCCCCC-CCCCC---C-----------CC-CCC-------------
Q ss_conf ---99987089984527607889--996-----4323778-87557---7-----------79-899-------------
Q 003585 205 ---AKMAVGLDTGVPWVMCKEDD--APD-----PVINSCN-GFYCD---A-----------FS-PNK------------- 245 (809)
Q Consensus 205 ---~~~~~~~g~~vP~~~c~~~~--~p~-----~vi~t~n-g~~~~---~-----------~~-~~~------------- 245 (809)
++..++.+.++|.+++.-.. ..+ +.++... ..|.. . |. ...
T Consensus 223 ~~~~~~ir~~~p~~pvt~n~~~~~~~~d~~~~a~~lDv~~~d~Y~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~dl~r~ 302 (645)
T 1kwg_A 223 RLQVEILRAHAPGKFVTHNFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYARTGHPDVAAFHHDLYRG 302 (645)
T ss_dssp HHHHHHHHHHSTTCEEECEECTTCCSSCHHHHGGGSSSEEEEECHHHHHHHSCCCHHHHHHTTTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999868998579847767777689998744959997778864444333333211123456755677777778876
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -9999202212543345548987778978899999999980991112226532789787799996334576899888789
Q 003585 246 -PYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYG 324 (809)
Q Consensus 246 -p~~P~~~tE~~~GWf~~wG~~~~~r~~ed~a~~v~~~~~~g~s~~NyYM~hGGTNfG~~~G~~~~~TSYDYdAPl~E~G 324 (809)
..+|.+.+|+..|... |+.......+..+.......++.|+..++|+-+. ..++...+|+++ .|++.|
T Consensus 303 ~~~kP~~i~E~~~~~~~-w~~~~~~~~pg~~r~~~~~~~a~Ga~~~~~f~w~---------~~~~~~E~~~~g-~l~~~g 371 (645)
T 1kwg_A 303 VGRGRFWVMEQQPGPVN-WAPHNPSPAPGMVRLWTWEALAHGAEVVSYFRWR---------QAPFAQEQMHAG-LHRPDS 371 (645)
T ss_dssp HTTTCEEEEEECCSCCS-SSSSCCCCCTTHHHHHHHHHHHTTCSCEEEECSB---------CCSSSTTTTSCC-SBCTTS
T ss_pred HCCCCEEEECCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEC---------CCCCCCCCCCCC-CCCCCC
T ss_conf 05998798568888888-7667888993099999999985578778886312---------689971014434-338789
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 888524799999999998521
Q 003585 325 LMRQPKYGHLKQLHEAIKLCE 345 (809)
Q Consensus 325 ~~~~pKy~~lr~l~~~i~~~~ 345 (809)
.+ +++|..++++...++..+
T Consensus 372 ~~-~~~~~e~~~~~~~l~~~~ 391 (645)
T 1kwg_A 372 AP-DQGFFEAKRVAEELAALA 391 (645)
T ss_dssp CB-CHHHHHHHHHHHHHHTCC
T ss_pred CC-CHHHHHHHHHHHHHHHHC
T ss_conf 92-889999999999998633
No 10
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*
Probab=1.00 E-value=1 Score=173.16 Aligned_cols=181 Identities=19% Similarity=0.346 Sum_probs=138.1
Q ss_pred EECCCEEECCEEEEEEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEECCCC----------CCCCCCCCEEE-------
Q ss_conf 8067199979796999998519999-97689999999997799889982107----------87799894134-------
Q 003585 31 YDRKAILINGQRRILISGSIHYPRS-TPEMWEDLIRKAKDGGLDVIDTYVFW----------NGHEPSPGHYN------- 92 (809)
Q Consensus 31 ~d~~~~~idG~~~~l~sG~iHy~R~-~~e~W~~~l~k~Ka~GlNtV~tYvfW----------n~hEp~~G~yd------- 92 (809)
.++..|.+||+|+.+.+..+||.+. +++.|++.|+.||++|+|+|++++|| ..+||.+|+||
T Consensus 15 ~~g~~F~ldGkp~~f~G~N~y~~~~~~~~~i~~~l~~~a~~G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~~~~~ 94 (383)
T 3pzg_A 15 VPRGSHMLNGKEFRFIGSNNYYMHYKSNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPEGISN 94 (383)
T ss_dssp ------------CCEEEEECSCTTTSCHHHHHHHHHHHHHHTCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCTTCSS
T ss_pred CCCCEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 04998989999999988870245669999999999999976998899701156555566665433667985464334442
Q ss_pred -ECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCC-CCCCCCEEECCCCCE--EEECCCHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf -306200999999999829799970584122102-889888073225983--752399556999999999999997705-
Q 003585 93 -FEGSYDLVRFIKTVQRVGLYAHLRIGPYVCAEW-NFGGFPVWLKYVPGI--SFRTDNGPFKVAMQGFTQKIVQMMKNE- 167 (809)
Q Consensus 93 -F~G~~dl~~fl~la~~~GL~ViLR~GPYicaEw-~~GG~P~WL~~~p~~--~~Rt~~~~y~~~~~~~~~~i~~~i~~~- 167 (809)
.++...|+++|++|+++||+|||.+ +.+| .+||.|.|+....+. ....+|+.++++.+++++.|++++...
T Consensus 95 ~~~~~~~LD~~i~~A~k~GI~viL~l----~~~w~~~GG~~~y~~~~g~~~~~~f~~dp~~~~~~~~~~~~l~~r~N~~t 170 (383)
T 3pzg_A 95 AQNGFERLDYTIAKAKELGIKLIIVL----VNNWDDFGGMNQYVRWFGGTHHDDFYRDERIKEEYKKYVSFLINHVNVYT 170 (383)
T ss_dssp CEEHHHHHHHHHHHHHHHTCEEEEEC----CBSSSTTSHHHHHHHHTTCCSTTHHHHCHHHHHHHHHHHHHHHTCBCTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEC----CCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 47899999999999998899899973----66654557864113324898635556899999999999999985535456
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH---HHCCCCCCCEE
Q ss_conf 3341369864974245565787645790139999999999---87089984527
Q 003585 168 KLFASQGGPIILSQIENEYGPESKSLGAAGHAYVNWAAKM---AVGLDTGVPWV 218 (809)
Q Consensus 168 ~l~~~~gGpII~~QIENEyg~~~~~~~~~~~~y~~~l~~~---~~~~g~~vP~~ 218 (809)
.+.+++.+.|++|||.||+++... ..+..+.+|+++| .|+.+...|.+
T Consensus 171 G~~y~~~p~I~~w~l~NEp~~~~~---~~~~~~~~w~~~~~~~IR~~Dp~~lVt 221 (383)
T 3pzg_A 171 GVPYREEPTIMAWELANELRCETD---KSGNTLVEWVKEMSSYIKSLDPNHLVA 221 (383)
T ss_dssp CCBGGGCTTEEEEESCBTCCCTTC---TTSHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred CCCCCCCCCEEEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 731079985789995377776667---647999999999999999658996699
Done!