Query 003586
Match_columns 809
No_of_seqs 246 out of 2203
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 18:33:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003586.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1633-1637//hhsearch_pdb/003586hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 1.0 1 1 1464.4 61.5 722 57-808 1-728 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 1.0 1 1 1374.9 44.7 726 52-805 2-804 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 1.0 1 1 1348.6 51.0 731 58-809 4-812 (821)
4 1wz2_A Leucyl-tRNA synthetase; 1.0 1 1 1195.0 52.3 709 61-809 2-846 (967)
5 4arc_A Leucine--tRNA ligase; l 1.0 1 1 1125.6 57.9 624 54-789 16-812 (880)
6 2v0c_A Aminoacyl-tRNA syntheta 1.0 1 1 1102.3 55.3 618 62-789 3-809 (878)
7 1wkb_A Leucyl-tRNA synthetase; 1.0 1 1 1091.6 55.4 674 61-773 2-810 (810)
8 1rqg_A Methionyl-tRNA syntheta 1.0 1 1 775.8 34.3 496 90-775 2-522 (722)
9 3u1f_A Methionyl-tRNA syntheta 1.0 1 1 772.1 35.1 485 87-786 6-514 (542)
10 3h99_A Methionyl-tRNA syntheta 1.0 1 1 725.4 24.4 494 86-786 14-527 (560)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=1.00 E-value=1 Score=1464.41 Aligned_cols=722 Identities=46% Similarity=0.837 Sum_probs=671.8
Q ss_pred CCCCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999991-5699999999966997778779999989958999889978600457877999999999987996022598
Q 003586 57 DTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPG 135 (809)
Q Consensus 57 ~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G 135 (809)
++++++|+| ++|++||++|++ ++|++..+.++++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++|
T Consensus 1 ~~~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G 79 (862)
T 1gax_A 1 MDLPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPG 79 (862)
T ss_dssp CCCCSSCCGGGTHHHHHHHHHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECE
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9986689948988999999986-777567678998189974899998986634668889999999999947995024565
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99889733799999999829994235889999999999999999999999980434457785214873569999999999
Q 003586 136 TDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIR 215 (809)
Q Consensus 136 ~D~~Gl~~e~~~e~~l~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~~~~~~v~~~f~~ 215 (809)
|||||+|+|.++++.+.++|+++.++++++|++.||+|++++++.|++|+++||+++||+|+|+|+|+.|+++|+|+|.+
T Consensus 80 ~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 159 (862)
T 1gax_A 80 TDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSR 159 (862)
T ss_dssp EBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 28777199999999998749996883999999999999999999999999982850357898216988999999999999
Q ss_pred HHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHC
Q ss_conf 99869656657465238999964573110124578913899999659870699982688523679489988999202110
Q 003586 216 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF 295 (809)
Q Consensus 216 L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~~~~~~~~~~~~~f~~~~~~~~l~v~TtrPetl~~~~ai~v~p~~~~y~~l 295 (809)
|+++|+||++.++|+|||.|+|+|||+||+|++..|++++|+|++.++ .+++|||||||||+||+||+|||++++|++|
T Consensus 160 L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l 238 (862)
T 1gax_A 160 YYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHL 238 (862)
T ss_dssp HHTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGTTCCCEEECSSCCTTCSC
T ss_pred HHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC-CEEEEEECCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 987798883241366378758555652233445565389999994699-7799995885534513589989986078887
Q ss_pred CCCEEECCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCCCCCHHHH
Q ss_conf 1485566789998143974587445678994430689993469999991999032047998522335--63489988999
Q 003586 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA--GLFRGLDRFEA 373 (809)
Q Consensus 296 ~g~~~~~P~~~~~~vpii~~~~V~~~~GtG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~--g~~~g~~~~~a 373 (809)
+|+++.+|+ .|+.+||++++||++++|||+||+|||||++||+++++||||++++++++|.++++| |.|.||.+++|
T Consensus 239 ~G~~~~~P~-~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a 317 (862)
T 1gax_A 239 LGKRARIPL-TEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEA 317 (862)
T ss_dssp TTCCCBCTT-CCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHH
T ss_pred CCCEEECCC-CCCEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 597897888-8983369704521268897625855788823799999839986433579870423567755489699999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCC
Q ss_conf 99999999977990013032246763236997168801131125053789999999863980475501488999997158
Q 003586 374 RKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNI 453 (809)
Q Consensus 374 ~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l 453 (809)
|+.|+++|++.|++++.+++.|++|+|||||+++++++++|||++++++++++++++++++++|+|++.++++.+||+++
T Consensus 318 ~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l 397 (862)
T 1gax_A 318 RRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 397 (862)
T ss_dssp HHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCEECCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHCC
T ss_conf 99999999867984542344465872058897689995152798869999999999970995671789999999997266
Q ss_pred CCEEEECCCCCCCEEEEEEECCCCCCEEECCCHHHHHHH--HHHHCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCH
Q ss_conf 762210256443110399982786518980893589999--755159985321158754200025674330037999994
Q 003586 454 KDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA 531 (809)
Q Consensus 454 ~DW~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvld~WfdS~l~~~~~~~~~~~~~ 531 (809)
+||||||||+||+|||+|+|+. ++...+.. .+++... ....||. ..+.|++|||||||||++||+++++||+++
T Consensus 398 ~DW~ISRqr~WG~pIP~w~~~~-~~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~- 473 (862)
T 1gax_A 398 KDWNISRQLWWGHQIPAWYCED-CQAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWFSSALWPLSTLGWPEET- 473 (862)
T ss_dssp CCCCCBCCCSSSCCCCCEEETT-TCCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHHHHTSCTTGGGTTTSCC-
T ss_pred CCEEEECCCCCCCCCCCEECCC-CCEEEEEC-CCCCCCCCHHHHHCCC-HHEECCCCCCCEEECCCCCCHHHCCCCCCH-
T ss_conf 5636753567875568434589-99899712-1103555502344482-110247764562100577502211688765-
Q ss_pred HHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHH
Q ss_conf 45520089747784003577589999999987419987215999426885689722113467669355797618726889
Q 003586 532 DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 611 (809)
Q Consensus 532 ~~f~~~~P~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~ 611 (809)
.+|++|||+|++++|+||+|||+++|++++..++|+.||+++++||++++.+|+|||||+||+|+|.+++++||+|++||
T Consensus 474 ~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~ 553 (862)
T 1gax_A 474 EDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRF 553 (862)
T ss_dssp HHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHH
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHH
T ss_conf 88984199538962730221299999999998619996127999446983799776666888789999998749089999
Q ss_pred HHHHCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 886089-8875234688889899999999999999987189998514699986301312443039993159999999999
Q 003586 612 TISLGT-AGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHML 690 (809)
Q Consensus 612 ~l~s~~-~~~d~~fs~~~l~~~~~~~~kL~N~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~ 690 (809)
||++.+ +++|++|+++.+.+.+++++++||+.+|+..++.+... ....++..|+|++++++.+
T Consensus 554 ~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~----------------~~~~~~~~D~~il~~l~~~ 617 (862)
T 1gax_A 554 ALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQA----------------KEDTPTLADRFMRSRLSRG 617 (862)
T ss_dssp HHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCC----------------CBCCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------CCCCCCHHHHHHHHHHHHH
T ss_conf 998468777888468899999999999999999999860257888----------------6544788899999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999785218868999999999999668999999644320488927789999999999999999960300378999999
Q 003586 691 IDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQ 770 (809)
Q Consensus 691 ~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~vl~~l~~lL~Pi~P~iaeelw~ 770 (809)
++.+.++|++|+|+.|++.+++|+++++||||++.+|+|++.+ +++++.+++.+++.+++||+|||||+|||||+
T Consensus 618 ~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~-----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~ 692 (862)
T 1gax_A 618 VEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG-----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQ 692 (862)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT-----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999972388799999999998876579998704343132-----89999999999999999970321579999999
Q ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 92069996272489999976887999999999999862
Q 003586 771 SLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLVIL 808 (809)
Q Consensus 771 ~L~~~~~sv~~~~wP~~~~~~~~~~~~~~~~~~~~~~~ 808 (809)
.|+. ++||+.++||..+ ..|+.++..++.++++++.
T Consensus 693 ~L~~-~~sv~~~~wP~~~-~~d~~~~~~~~~~~~v~~~ 728 (862)
T 1gax_A 693 ALTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTA 728 (862)
T ss_dssp HHHC-CSCGGGSCCCCCC-CCCHHHHHHHHHHHHHHHH
T ss_pred HCCC-CCEEEECCCCCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 6689-9817854899998-6789999999999999999
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=1.00 E-value=1 Score=1374.88 Aligned_cols=726 Identities=25% Similarity=0.444 Sum_probs=650.9
Q ss_pred CCCCCCCCCC-----CCCH-HHHHHHHHHHHHCCCCCCCC--CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4578999999-----9991-56999999999669977787--79999989958999889978600457877999999999
Q 003586 52 AENNKDTLPK-----TFDF-TSEERIYNWWESQGYFKPNF--ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYH 123 (809)
Q Consensus 52 ~~~~~~~~~~-----~~~~-~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~ 123 (809)
+|++|..||+ ++++ ++|++||++|+++++|++.. +.++++|+|++|||||||.|||||++|++++|+++||+
T Consensus 2 ~y~~tl~lp~t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~ 81 (917)
T 1ffy_A 2 DYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYK 81 (917)
T ss_dssp CSGGGSCCCCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 61353158999999888968886999999998799554532356898645277899999951677899899999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 98799602259899889733799999999829994235889999999999999999999999980434457785214873
Q 003586 124 RMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDE 203 (809)
Q Consensus 124 rm~G~~V~~~~G~D~~Gl~~e~~~e~~l~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~ 203 (809)
||+||+|+|++||||||||||.++++. |+++.++++++|++.|++|++++++.|++|+++||+++||+|+|+|||+
T Consensus 82 rm~G~~v~~~~GwD~hGlpiE~~a~k~----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~ 157 (917)
T 1ffy_A 82 TMQGFYAPYVPGWDTHGLPIEQALTKK----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKP 157 (917)
T ss_dssp HTTTCBCCCCCEEBCCSHHHHHHHHHH----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCEECCCH
T ss_conf 967998898001763439999999981----9990228999999999999999999999999981907716888681798
Q ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC------CCEEEEEEECCCCCC
Q ss_conf 56999999999999869656657465238999964573110124578913899999659------870699982688523
Q 003586 204 QLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG------RSDFLTIATTRPETL 277 (809)
Q Consensus 204 ~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~~~~~~~~~~~~~f~~~~------~~~~l~v~TtrPetl 277 (809)
.|+++++++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+..++++|++|++.+ ++.+++|||||||||
T Consensus 158 ~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl 237 (917)
T 1ffy_A 158 EYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTI 237 (917)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGS
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCHH
T ss_conf 99999999999999769967404431123888968443552034565762899998216656547987699996883234
Q ss_pred CCCCEEEECCC---------CC-------------------HHH----------HCCCCEEECCCCCCCEEEEEECCCCC
Q ss_conf 67948998899---------92-------------------021----------10148556678999814397458744
Q 003586 278 FGDVALAVNPQ---------DE-------------------HYS----------QFIGMMAIVPMTYGRHVPIISDKYVD 319 (809)
Q Consensus 278 ~~~~ai~v~p~---------~~-------------------~y~----------~l~g~~~~~P~~~~~~vpii~~~~V~ 319 (809)
+||+||+|||+ ++ +|+ +|.|++++||+ .++.+||+.++||+
T Consensus 238 ~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~pvi~~~~V~ 316 (917)
T 1ffy_A 238 PSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF-LDRESLVINGDHVT 316 (917)
T ss_dssp SCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCT-TCCSBCCCCCCSSC
T ss_pred HHCEEEEECCCCCEEEEEECCCEEEHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECCC-CCCEEEEEECCCCC
T ss_conf 34528999899826889717843406899999999860845430222223323004688897888-88712488325145
Q ss_pred CCCCCCCEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 56789944306899934699999919990320479985223356348998899999999999977990013032246763
Q 003586 320 KEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPR 399 (809)
Q Consensus 320 ~~~GtG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~ 399 (809)
+++|||+||+|||||++||+++++||||++++++++|.+++.+|.|+||.+++|++.|++.|+++|.+++.+++.|++|+
T Consensus 317 ~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~ 396 (917)
T 1ffy_A 317 TDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPH 396 (917)
T ss_dssp CSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEE
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
T ss_conf 68997615767989988999999859980001789861677661138959999899999999967984354444345877
Q ss_pred CCCCCCEEEEEECCCEEEECCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 23699716880113112505378999999986398047550148899999715876221025644311039998278651
Q 003586 400 SQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEE 479 (809)
Q Consensus 400 c~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~piP~~~~~~~~~~ 479 (809)
||||++|+++++++|||+++++++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+|+|+. +.
T Consensus 397 c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~--~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~--g~ 472 (917)
T 1ffy_A 397 DWRTKKPVIFRATPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN--GE 472 (917)
T ss_dssp ETTTCCBCEEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT--SC
T ss_pred ECCCCCEEEEEECCCEEEEHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEECCC--CC
T ss_conf 45889778998236047658999999999986--385107899999999984475340542677686546036799--98
Q ss_pred EEECCC----HHHHHHH--------------HHH-----HCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCHHHHHH
Q ss_conf 898089----3589999--------------755-----15998532115875420002567433003799999445520
Q 003586 480 YIVARN----ADEALEK--------------AHQ-----KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKK 536 (809)
Q Consensus 480 ~~~~~~----~~~~~~~--------------~~~-----~~~~~~~~~~~~dvld~WfdS~l~~~~~~~~~~~~~~~f~~ 536 (809)
.++..+ +.+..+. ... +|| +..+.|++||||||||||+++++.+++. .++
T Consensus 473 ~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g-~~~~~~~~D~lD~WfdSg~~~~~~l~~~----~~~-- 545 (917)
T 1ffy_A 473 IIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSP-NGTFTKETDIMDVWFDSGSSHRGVLETR----PEL-- 545 (917)
T ss_dssp EECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCT-TSCCEECCCEECHHHHHHTHHHHTTTTS----TTC--
T ss_pred EECCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCC-CCCCCCCCCCCCEECCCCCCHHHHCCCC----HHC--
T ss_conf 836788989999875422875445679778465544355677-4444445787673168999888871883----114--
Q ss_pred CCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 08974778400357758999999998741998721599942688568972211346766935579761872688988608
Q 003586 537 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 616 (809)
Q Consensus 537 ~~P~d~~~~G~Di~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s~ 616 (809)
.||+|++++|+||+|+|+.++++.+.++.+..||+++++|||+++.+|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~ 625 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST 625 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTS
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf 89854999985611319999999999962998553203761388478868101268847858998757989999887605
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98875234688889899999999999999987189998514699986301312443039993159999999999999997
Q 003586 617 TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTA 696 (809)
Q Consensus 617 ~~~~d~~fs~~~l~~~~~~~~kL~N~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~ 696 (809)
++++|++|+++.+...++++++|||+++|+++++.++..... ..+...++..|+|++++++.+++.+.+
T Consensus 626 ~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~-----------~v~~~~l~~~D~~il~~l~~~~~~v~~ 694 (917)
T 1ffy_A 626 DYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTD-----------SIPESELLEVDRYLLNRLREFTASTIN 694 (917)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHH-----------CCCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----------CCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 888886248999999999999999999988765420574335-----------678100588799999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-
Q ss_conf 852188689999999999996689999996443204889-277899999999999999999603003789999999206-
Q 003586 697 SYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEY-DSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK- 774 (809)
Q Consensus 697 a~e~~~f~~a~~~i~~f~~~~~~n~Yie~~k~~~~~~~~-~~~~~~~~~~l~~vl~~l~~lL~Pi~P~iaeelw~~L~~- 774 (809)
+|++|+|++|++.+++|++++++|+|++..|+|+|+... ...+++++.+++.+++.+++||+|||||+|||||+.|++
T Consensus 695 a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~ 774 (917)
T 1ffy_A 695 NYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHV 774 (917)
T ss_dssp HHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 99766989999999999999988899875002442367780999999999999999999972153558999999973567
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9996272489999976887999999999999
Q 003586 775 RKEALIVSPWPQTSLPRHMSAIKRFENLQSL 805 (809)
Q Consensus 775 ~~~sv~~~~wP~~~~~~~~~~~~~~~~~~~~ 805 (809)
..+||+.+.||..+. .|+.++..++.++++
T Consensus 775 ~~~sv~~~~wP~~~~-~~~~l~~~~~~~~~v 804 (917)
T 1ffy_A 775 KEESVHLADMPKVVE-VDQALLDKWRTFMNL 804 (917)
T ss_dssp SSSSGGGSCCCCCCC-CCHHHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCC-CHHHHHHHHHHHHHH
T ss_conf 899758137999983-108999999999999
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=1.00 E-value=1 Score=1348.56 Aligned_cols=731 Identities=27% Similarity=0.483 Sum_probs=656.3
Q ss_pred CCCCCCCH-HHHHHHHHHHHHCCCCCCCCC--CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999991-569999999996699777877--999998995899988997860045787799999999998799602259
Q 003586 58 TLPKTFDF-TSEERIYNWWESQGYFKPNFE--RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLP 134 (809)
Q Consensus 58 ~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~ 134 (809)
++ ++|++ ++|++||++|+++++|++..+ .++++|++++|||||||.|||||+++++++|+++||+||+||+|+|++
T Consensus 4 ~~-~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~ 82 (821)
T 1ile_A 4 EV-GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRA 82 (821)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 45-68997898899999998779903570015899968995289999998704455737999999999995699403436
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89988973379999999982999----42358899999999999999999999999804344577852148735699999
Q 003586 135 GTDHAGIATQLVVEKMLAAEGIK----RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVV 210 (809)
Q Consensus 135 G~D~~Gl~~e~~~e~~l~~~g~~----~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~~~~~~v~ 210 (809)
||||||+|||.++++.+ |.+ ..++++++|++.|++|++++++.|++++++||+++||+|+++|+|+.|+++++
T Consensus 83 G~D~~Glpie~~a~k~l---~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~ 159 (821)
T 1ile_A 83 GWDTHGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (821)
T ss_dssp EECCCHHHHHHHHHHHT---TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH---CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEECCHHHHHHHH
T ss_conf 43677865799999984---625552076559999999999999999999999999828757157985878989999999
Q ss_pred HHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEEEECCC------CEEEEEEECCCCCCCCCCE
Q ss_conf 99999998696566574652389999645731101--245789138999996598------7069998268852367948
Q 003586 211 EAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVA 282 (809)
Q Consensus 211 ~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~--~~~~~~~~~~~~f~~~~~------~~~l~v~TtrPetl~~~~a 282 (809)
|+|.+|+++|+||++.++|+|||.|+|+|||+||+ |++..++++|++|++.+. +.+++|||||||||+||+|
T Consensus 160 ~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~a 239 (821)
T 1ile_A 160 WSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVA 239 (821)
T ss_dssp HHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCC
T ss_pred HHHHHHHHCCCEEECCCCEEECCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHCEE
T ss_conf 99999998698554474257317889763176751572046684599999835876667889889999499721434579
Q ss_pred EEECCC---------CCHH-----------------------HHCCCCEEECCCCC--CCEEEEEECCCCCCCCCCCCEE
Q ss_conf 998899---------9202-----------------------11014855667899--9814397458744567899443
Q 003586 283 LAVNPQ---------DEHY-----------------------SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLK 328 (809)
Q Consensus 283 i~v~p~---------~~~y-----------------------~~l~g~~~~~P~~~--~~~vpii~~~~V~~~~GtG~v~ 328 (809)
|+|||+ +++| ++|+|+++.||+.. ++.+||++++||++++|||+||
T Consensus 240 v~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~ 319 (821)
T 1ile_A 240 AAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVH 319 (821)
T ss_dssp EEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEE
T ss_pred EEECCCCCEEEEECCCCEEEEHHHHHHHHHHHCCEEEEEECHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCEE
T ss_conf 99989971567871794798628999999840858988750687459889867766689877998547186688976447
Q ss_pred ECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 06899934699999919990320479985223356348998899999999999977990013032246763236997168
Q 003586 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (809)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~ 408 (809)
+||+||++||++|++||||++++++++|++++. | |+||.+++||+.|+++|+++|++++.+++.|++|+|||||+|++
T Consensus 320 ~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~ 397 (821)
T 1ile_A 320 QAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLM 397 (821)
T ss_dssp CCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCE
T ss_pred ECCCCCHHHHHHHHHCCCCCCEEECCCCCCCCC-C-CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCCCEEE
T ss_conf 447798789999998599832047899737336-7-68979899889999999967991300023125877468899799
Q ss_pred EEECCCEEEECCHHHHHHHHHHHCCCCEEECCHH-HHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCHH
Q ss_conf 8011311250537899999998639804755014-889999971587622102564431103999827865189808935
Q 003586 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (809)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~-~~~~~~~l~~l~DW~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (809)
+++++|||+++++++++++++++ +++|+|++. ++++.+||++++||||||||+||+|||+|+|++ ++...+..+..
T Consensus 398 ~~~~~qWF~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~-~~~~~vi~~~~ 474 (821)
T 1ile_A 398 YYATESWFIKNTLFKDELIRNNQ--EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQA-CGKEEAIGSFQ 474 (821)
T ss_dssp EEECCEEEECGGGGHHHHHHHHH--HSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESS-SSCCEECCSHH
T ss_pred EEECCHHHHCHHHHHHHHHHHHC--CEEEECCHHHHHHHHHHHHCCCHHEECCCCCCCCEEEEEEECC-CCCEEEECCHH
T ss_conf 98355155266999999999756--8189783446769999983771310004677788231899659-99678527599
Q ss_pred HHHHHHHH------------------HCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCHHHHHHCCCCCEEEEEEHH
Q ss_conf 89999755------------------159985321158754200025674330037999994455200897477840035
Q 003586 488 EALEKAHQ------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDI 549 (809)
Q Consensus 488 ~~~~~~~~------------------~~~~~~~~~~~~dvld~WfdS~l~~~~~~~~~~~~~~~f~~~~P~d~~~~G~Di 549 (809)
++.+.... .|.++..++|++|||||||||+++|++.++||.++++.|++|||+|++++|+||
T Consensus 475 ~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~ 554 (821)
T 1ile_A 475 ELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQ 554 (821)
T ss_dssp HHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGG
T ss_pred HHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEECCCCCCHHHHCCCCCCCHHHHHHCCCCCCCCCHHHH
T ss_conf 99750556662122204310012335788997632165300013236612476508985466778533886100330656
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCCCCHHH
Q ss_conf 775899999999874199872159994268856897221134676693557976187268898860898-8752346888
Q 003586 550 LFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER 628 (809)
Q Consensus 550 ~~~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s~~~-~~d~~fs~~~ 628 (809)
+|||++++++++.+++++.||+++++||++++.+|+|||||+||+|+|.+++++||+|++||||++.++ ++|++||++.
T Consensus 555 ~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~ 634 (821)
T 1ile_A 555 TRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNL 634 (821)
T ss_dssp GGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHH
T ss_pred HCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEECHHH
T ss_conf 60199999998998629877655999800998999877765788999999998729799999998378988885754999
Q ss_pred HHH-HHHHHHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 898-99999999999999987--189998514699986301312443039993159999999999999997852188689
Q 003586 629 LTA-NKAFTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705 (809)
Q Consensus 629 l~~-~~~~~~kL~N~~~f~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 705 (809)
+.. ++++++++||+++|+.. ++.+.... . ......++..|+|++++++.+++.+.++|++|+|++
T Consensus 635 l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~ 702 (821)
T 1ile_A 635 VRETVRDYFLTLWNVYSFFVTYANLDRPDLK-----------N-PPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTT 702 (821)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-----------S-CCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----------C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 8799999999999999999985111368853-----------3-334333888899999999999999999997668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----CC-CEE
Q ss_conf 9999999999966899999964432048892778999999999999999996030037899999992069----99-627
Q 003586 706 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR----KE-ALI 780 (809)
Q Consensus 706 a~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~vl~~l~~lL~Pi~P~iaeelw~~L~~~----~~-sv~ 780 (809)
|+..|++|++++++|+|++.+|+++|...+...+++++.+++.+++.+++||+|||||+|||||+.|+.. ++ ||+
T Consensus 703 A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~ 782 (821)
T 1ile_A 703 SARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVH 782 (821)
T ss_dssp HHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 99999999999999999998521102577767789999999999999998708866657999998663334677888658
Q ss_pred ECCCCCCCC-CCCHHHHHHHHHHHHHHHHC
Q ss_conf 248999997-68879999999999998629
Q 003586 781 VSPWPQTSL-PRHMSAIKRFENLQSLVILI 809 (809)
Q Consensus 781 ~~~wP~~~~-~~~~~~~~~~~~~~~~~~~~ 809 (809)
.+.||..+. ..|++++..++.++++++.+
T Consensus 783 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (821)
T 1ile_A 783 LADWPEADPALADEALVAQMRAVLKVVDLA 812 (821)
T ss_dssp GSCCCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 216899971008989999999999999999
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=1195.03 Aligned_cols=709 Identities=22% Similarity=0.354 Sum_probs=589.6
Q ss_pred CCCCH-HHHHHHHHHHHHCCCCCCCCCCCC---CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99991-569999999996699777877999---99899589998899786004578779999999999879960225989
Q 003586 61 KTFDF-TSEERIYNWWESQGYFKPNFERGS---DPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGT 136 (809)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~---~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~ 136 (809)
+.||+ ++|++||++|+++++|++..+ ++ ++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 989989999999999986798034722-2688996899848998888750123587899999999998179960888727
Q ss_pred CCCCCCHHHHHHHHHHHCCC--------CCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HH
Q ss_conf 98897337999999998299--------94235889999--99999999999999999998043445778521487--35
Q 003586 137 DHAGIATQLVVEKMLAAEGI--------KRVELSRDEFT--KRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQ 204 (809)
Q Consensus 137 D~~Gl~~e~~~e~~l~~~g~--------~~~~~~~e~f~--~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d--~~ 204 (809)
||||+|+|.++++... |. ....+.++++. ..|++|++++++.+++|+++||+++||+|+|+|+| |.
T Consensus 81 D~~GlPie~~a~~~~~--~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~ 158 (967)
T 1wz2_A 81 HITGSPIVGIAERIKN--RDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPP 158 (967)
T ss_dssp BCCSSHHHHHHHHHHT--TCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHH
T ss_pred CCCCCHHHHHHHHHHC--CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCEEECCCCHH
T ss_conf 9988188999998603--65368999998609987888888889999999999999999981942735897687889835
Q ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEEECCC--CEEEEEEECCCCCCCCC
Q ss_conf 69999999999998696566574652389999645731101245789--138999996598--70699982688523679
Q 003586 205 LSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGR--SDFLTIATTRPETLFGD 280 (809)
Q Consensus 205 ~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~~~~~~~--~~~~~~f~~~~~--~~~l~v~TtrPetl~~~ 280 (809)
|+++++|+|.+|+++|+||++.++|+|||.|+|+|||+||++.+..+ .+++++|++.++ +.+++|||||||||+|+
T Consensus 159 y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~ 238 (967)
T 1wz2_A 159 FSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGV 238 (967)
T ss_dssp HHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGC
T ss_pred HHHHHHHHHHHHHHCCCEEEECEEECCCCCCCCCCCHHHHCCCCCCEECEEEEEEEEECCCCCCEEEEEECCCCHHHHHH
T ss_conf 89999999999997899897146762358778871665650698740121699999835888756999983885075565
Q ss_pred CEEEECCC---------C----C------------HH-------------HHCCCCEEECCCCCCCEEEEEECCCCCCCC
Q ss_conf 48998899---------9----2------------02-------------110148556678999814397458744567
Q 003586 281 VALAVNPQ---------D----E------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEF 322 (809)
Q Consensus 281 ~ai~v~p~---------~----~------------~y-------------~~l~g~~~~~P~~~~~~vpii~~~~V~~~~ 322 (809)
+||+|||+ + + +| ++|+|++++||+ .++.+||++++||++++
T Consensus 239 ~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~-~~~~ipi~~~~~V~~~~ 317 (967)
T 1wz2_A 239 TNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPV-SGDEVIILPAEFVDPDN 317 (967)
T ss_dssp CEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSS-SSCEEEEEECSSCCSSS
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECHHHCCCEEECCC-CCCCEEEEECCCCCCCC
T ss_conf 08998889837999916987542321199999999864058489999881550689898889-99803799405245898
Q ss_pred CCCCEEECCCCCHHHHHH----------HHHHCCC--------CEEECCC------------------------------
Q ss_conf 899443068999346999----------9991999--------0320479------------------------------
Q 003586 323 GTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK------------------------------ 354 (809)
Q Consensus 323 GtG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~------------------------------ 354 (809)
|||+||+|||||++||++ +++|||| ++++++.
T Consensus 318 GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~ 397 (967)
T 1wz2_A 318 ATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQAT 397 (967)
T ss_dssp TTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHT
T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 86217860689877899998640013579872996010256562233514775653135555530677864167777777
Q ss_pred ---------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEE-ECCCEEEECCH--H
Q ss_conf ---------98522335634899889999999999997799001303224676323699716880-11311250537--8
Q 003586 355 ---------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP--L 422 (809)
Q Consensus 355 ---------~G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~-~~~qwfi~~~~--~ 422 (809)
+|.++ +|.|+|+.+++|++.|+++|+++|.+++.+.+.| +|+|||||++++++ +++|||+++++ +
T Consensus 398 ~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~~ 474 (967)
T 1wz2_A 398 KTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEW 474 (967)
T ss_dssp THHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTTH
T ss_pred HHHHHCCCCCCEEE--CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCEECCCCCEEEEECCCCCCCEECCCHHH
T ss_conf 77654014682694--5674881889989999999996798157886587-96378999889995367764144680678
Q ss_pred HHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCEEEE---EEECCCCC--CEEECCCHHHHHHHHHHHC
Q ss_conf 999999986398047550148899999715876221025644311039---99827865--1898089358999975515
Q 003586 423 AEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE--EYIVARNADEALEKAHQKY 497 (809)
Q Consensus 423 ~~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~piP~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 497 (809)
+++++++++ +++|+|++.++++.+|+++++||||||||+||+|||+ |.++...+ -|+.............+.+
T Consensus 475 k~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~~~~~~ 552 (967)
T 1wz2_A 475 KEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG 552 (967)
T ss_dssp HHHHHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--CCEEECCCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHC
T ss_conf 999998661--237627454366888662043714146787885088675533466778725754000356898877762
Q ss_pred CCCCCCCCCCCCCCEEECC----CC-CCCE-ECCCCCCC----HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9985321158754200025----67-4330-03799999----4455200897477840035775899999999874199
Q 003586 498 GKNVEIYQDPDVLDTWFSS----AL-WPFS-TLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGS 567 (809)
Q Consensus 498 ~~~~~~~~~~dvld~WfdS----~l-~~~~-~~~~~~~~----~~~f~~~~P~d~~~~G~Di~~~w~~~~~~~~~~l~~~ 567 (809)
|-.. -.-.++++|+||.+ +. +++. .+|+|... +++|++|||+|++++|+||+++|..++++++.++++.
T Consensus 553 g~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~ 631 (967)
T 1wz2_A 553 KLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFRE 631 (967)
T ss_dssp CCCG-GGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCS
T ss_pred CCCH-HHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 9996-884911040541376565763201554199978876537999833897078653273032899999999997096
Q ss_pred CCC-EEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 872-159994268856897221134676693557976187268898860-898875234688889899999999999999
Q 003586 568 VPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKLWNAGKF 645 (809)
Q Consensus 568 ~Pf-~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kL~N~~~f 645 (809)
.|+ +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||++ .++++|++|+++.+...+++++++||++++
T Consensus 632 ~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~ 710 (967)
T 1wz2_A 632 EHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQ 710 (967)
T ss_dssp TTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEE-CCEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 644546899427960-8878121446779999999871958999999957997778640789999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98718999851469998630131244303999315999999999999999785218868999999999999668999999
Q 003586 646 ILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEA 725 (809)
Q Consensus 646 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yie~ 725 (809)
+.++. .. ....++..|+|++++++.+++.+.++|++|+|+.|+..++.++++ .+|+|++.
T Consensus 711 ~~~~~---~~----------------~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~-~~n~Yi~~ 770 (967)
T 1wz2_A 711 FAEYE---VK----------------GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMN-DLRWYLRR 770 (967)
T ss_dssp HHSSC---CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHH-HHHHHHHH
T ss_pred HHCCC---CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 86478---87----------------744278889999999999999999999824899999999999999-99988875
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 6443204889277899999999999999999603003789999999206999627248999997-688799999999999
Q 003586 726 SKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQS 804 (809)
Q Consensus 726 ~k~~~~~~~~~~~~~~~~~~l~~vl~~l~~lL~Pi~P~iaeelw~~L~~~~~sv~~~~wP~~~~-~~~~~~~~~~~~~~~ 804 (809)
+|++ . +++++.+++.+++.+++||+|||||+|||||+.|+. +.||+.+.||..+. ..|++++..++.+++
T Consensus 771 ~k~~-----~---~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~-~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~ 841 (967)
T 1wz2_A 771 TEGR-----D---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG-EGFVSLAKWPEPVEEWWNETIEAEEEFIRS 841 (967)
T ss_dssp TTTC-----C---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSC-CSCGGGSCCCCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCH-----H---HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC-CCCEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1564-----4---789999999999999998355455589999996599-985540389999810089899999999999
Q ss_pred HHHHC
Q ss_conf 98629
Q 003586 805 LVILI 809 (809)
Q Consensus 805 ~~~~~ 809 (809)
+++.+
T Consensus 842 ~~~~v 846 (967)
T 1wz2_A 842 VMEDI 846 (967)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=1.00 E-value=1 Score=1125.64 Aligned_cols=624 Identities=24% Similarity=0.409 Sum_probs=529.2
Q ss_pred CCCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 789999999991-5699999999966997778779999989958999889978600457877999999999987996022
Q 003586 54 NNKDTLPKTFDF-TSEERIYNWWESQGYFKPNFERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLW 132 (809)
Q Consensus 54 ~~~~~~~~~~~~-~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~ 132 (809)
....+|++.|++ ++|++||++|+++++|++..+.++++|++++|||||||.|||||+++++++|+++||+||+||+|+|
T Consensus 16 ~~~~~m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~ 95 (880)
T 4arc_A 16 PRGSHMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 95 (880)
T ss_dssp -----CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 88500145699599999999999866981468768999889975899998983532448899999999999972993687
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 59899889733799999999829994235889999999999999999999999980434457785214873569999999
Q 003586 133 LPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEA 212 (809)
Q Consensus 133 ~~G~D~~Gl~~e~~~e~~l~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~~~~~~v~~~ 212 (809)
++|||+||+|+|..+ .+.|.++ ++|++++++.|++|+++||+++||+|+++|+++.|+++++++
T Consensus 96 ~~G~D~~Glpie~~a----~~~g~~p------------~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~ 159 (880)
T 4arc_A 96 PIGWDAFGLPAEGAA----VKNNTAP------------APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKF 159 (880)
T ss_dssp CCEECCCSTHHHHHH----HHTTSCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHH
T ss_pred ECCCCCCCCHHHHHH----HHCCCCH------------HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHH
T ss_conf 357166586999999----9829989------------999999999999999982897577888773887899999999
Q ss_pred HHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC------------CCCC-------------------------------
Q ss_conf 999998696566574652389999645731101------------2457-------------------------------
Q 003586 213 FIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE------------YSEE------------------------------- 249 (809)
Q Consensus 213 f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~------------~~~~------------------------------- 249 (809)
|.+|+++|+||++.++|+|||.|+|+|||.||. +++.
T Consensus 160 f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~ 239 (880)
T 4arc_A 160 FTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTM 239 (880)
T ss_dssp HHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHH
T ss_pred HHHHHHCCCEEEECEEEEECCCCCCEECCHHHHCCCCCCCCCCCEEEECCCEEEEECHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999779889926347634876888051664168576789841799714258861254788998876403565889999
Q ss_pred ------CCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHC----------------------------
Q ss_conf ------8913899999659870699982688523679489988999202110----------------------------
Q 003586 250 ------PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF---------------------------- 295 (809)
Q Consensus 250 ------~~~~~~~~f~~~~~~~~l~v~TtrPetl~~~~ai~v~p~~~~y~~l---------------------------- 295 (809)
.+..++++|++.+.+.+|+|||||||||+|+++|+|||+++++..+
T Consensus 240 ~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (880)
T 4arc_A 240 QRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATME 319 (880)
T ss_dssp HHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC---------------
T ss_pred HHHHHCCCCCEEEEEEECCCCCEEEEEECCCHHHCCCEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCE
T ss_conf 98650446623899884699855899938843413870899899867799871470999999999860671243430242
Q ss_pred -----CCCEEECCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEECCC---------------C
Q ss_conf -----14855667899981439745874456789944306899934699999919990320479---------------9
Q 003586 296 -----IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK---------------D 355 (809)
Q Consensus 296 -----~g~~~~~P~~~~~~vpii~~~~V~~~~GtG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~---------------~ 355 (809)
+|++++||+ .|+++||+.++||++++|||+||+|||||++||+++++||||++++++. +
T Consensus 320 ~~g~~~g~~~~~P~-~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~ 398 (880)
T 4arc_A 320 KKGVDTGFKAVHPL-TGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEK 398 (880)
T ss_dssp -CEEEEEEEEECTT-TCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSC
T ss_pred EECCCCCCEEECCC-CCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 22102583895689-99885799837604678986089835898789999998399814753367665432110131577
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHCCCC
Q ss_conf 85223356348998899999999999977990013032246763236997168801131125053789999999863980
Q 003586 356 GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 435 (809)
Q Consensus 356 G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~ 435 (809)
|.+. ++|.|.||.+++|+++|++.|+++|++.+.-
T Consensus 399 g~~~-ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v-------------------------------------------- 433 (880)
T 4arc_A 399 GVLF-NSGEFNGLDHEAAFNAIADKLTAMGVGERKV-------------------------------------------- 433 (880)
T ss_dssp CCBC-SSGGGTTCCHHHHHHHHHHHHHHTTSEEEEE--------------------------------------------
T ss_pred CEEE-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE--------------------------------------------
T ss_conf 5162-5745699799999999999999769864168--------------------------------------------
Q ss_pred EEECCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCH--------------HHHHHHHHH----HC
Q ss_conf 475501488999997158762210256443110399982786518980893--------------589999755----15
Q 003586 436 TIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA--------------DEALEKAHQ----KY 497 (809)
Q Consensus 436 ~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~piP~~~~~~~~~~~~~~~~~--------------~~~~~~~~~----~~ 497 (809)
+| +|+|||||||||||+|||+|||..+ +...+.... ..++..... .|
T Consensus 434 ~y--------------rlrDW~iSRQRyWG~PIPi~~c~~c-g~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~c 498 (880)
T 4arc_A 434 NY--------------RLRDWGVSRQRYWGAPIPMVTLEDG-TVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTV 498 (880)
T ss_dssp EE--------------SCCCEECEESCSSSCBCCEEEETTS-CEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEES
T ss_pred EE--------------ECCCCEEEEEECCCCCCEEEEECCC-CEEECCHHHCCCCCCHHCCCCCCCCCHHHCCCCEEECC
T ss_conf 99--------------7354401122045785008997899-75857768774226201154788993576756414025
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCEECCCCCCC-----HHHHHHCCCCCEEEEEEH--HHHHHHHHHH-----HHHHHHC
Q ss_conf 998532115875420002567433003799999-----445520089747784003--5775899999-----9998741
Q 003586 498 GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMV-----MMGIEFT 565 (809)
Q Consensus 498 ~~~~~~~~~~dvld~WfdS~l~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~D--i~~~w~~~~~-----~~~~~l~ 565 (809)
. +..++||+|||||||||| |||+++++|+++ ++.+++|||+|+|++|.| |+|+|++|+. .+++ +.
T Consensus 499 p-g~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~-~~ 575 (880)
T 4arc_A 499 N-GMPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGM-VN 575 (880)
T ss_dssp S-SSEEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTS-CC
T ss_pred C-CCCCEECCCCCCCCCCCC-HHHHHHCCCCCCCCCCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf 8-976266897677701072-88886619974344458577851589248103534678889899999999998224-36
Q ss_pred CCCCCEEEEEEEEEE-------CCCCC------------------------------------CCCCCCCCCCCHHHHHH
Q ss_conf 998721599942688-------56897------------------------------------22113467669355797
Q 003586 566 GSVPFSHVYLHGLIR-------DSQGR------------------------------------KMSKTLGNVIDPIDTIK 602 (809)
Q Consensus 566 ~~~Pf~~v~~hg~vl-------d~~G~------------------------------------KMSKS~GN~i~p~eii~ 602 (809)
++.||+++++||||+ |.+|+ |||||+||+|+|.++++
T Consensus 576 ~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIe 655 (880)
T 4arc_A 576 SDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVE 655 (880)
T ss_dssp CSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHH
T ss_pred CCCCHHHEEEECEEEECCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 78876885883329612310125678501017788100124555421000147862125555324686999789899998
Q ss_pred HHCCCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHH
Q ss_conf 6187268898860898-875234688889899999999999999987189998514699986301312443039993159
Q 003586 603 EFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPEC 681 (809)
Q Consensus 603 ~ygaDalR~~l~s~~~-~~d~~fs~~~l~~~~~~~~kL~N~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ 681 (809)
+||||++|||+++.++ ++|++||++.+.+.+++++|+||++++......... .+...++..|+
T Consensus 656 kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~----------------~~~~~l~~~D~ 719 (880)
T 4arc_A 656 RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAA----------------LNVDALTENQK 719 (880)
T ss_dssp HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCC----------------CCSTTCCHHHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----------------CCCCCCCHHHH
T ss_conf 80932899999844887788614899999999999999999999874255455----------------66332787789
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999997852-1886899999999999966899999964432048892778999999999999999996030
Q 003586 682 WVVSKLHMLIDTVTASYD-KYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPF 760 (809)
Q Consensus 682 ~il~~l~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~vl~~l~~lL~Pi 760 (809)
|++++++.++++++++|+ +|+|++|+.++++|+ +.+++ | .+ + ...+..+++.+++.+++||+||
T Consensus 720 ~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~---------~~-~---~~~~~~~l~~~l~~ll~LLaPf 784 (880)
T 4arc_A 720 ALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A---------PT-D---GEQDRALMQEALLAVVRMLNPF 784 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S---------CC-S---SHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HHHHH-H---------HC-C---CHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999986556469999999999-99986-3---------12-4---3678999999999999997302
Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 03789999999206999627248999997
Q 003586 761 MPFVTEELWQSLRKRKEALIVSPWPQTSL 789 (809)
Q Consensus 761 ~P~iaeelw~~L~~~~~sv~~~~wP~~~~ 789 (809)
|||+|||||+.|+.. +||+.++||.+++
T Consensus 785 ~PhiaEElW~~Lg~~-~sv~~~~wP~~d~ 812 (880)
T 4arc_A 785 TPHICFTLWQELKGE-GDIDNAPWPVADE 812 (880)
T ss_dssp SHHHHHHHHHHTTCS-SCGGGSCCCCCCH
T ss_pred CHHHHHHHHHHCCCC-CEEEECCCCCCCH
T ss_conf 099999999972899-7478578998897
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=1.00 E-value=1 Score=1102.26 Aligned_cols=618 Identities=26% Similarity=0.427 Sum_probs=521.2
Q ss_pred CCCH-HHHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9991-56999999999669977787-799999899589998899786004578779999999999879960225989988
Q 003586 62 TFDF-TSEERIYNWWESQGYFKPNF-ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHA 139 (809)
Q Consensus 62 ~~~~-~~E~~~~~~W~~~~~f~~~~-~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~ 139 (809)
+|++ ++|++||++|+++++|+... +.++++|+++++||||||.|||||+++++++|+++||+||+||+|+|++|||||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~ 82 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAF 82 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 89978999999999987698146866589999899778999999835124488999999999999659956720621752
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 97337999999998299942358899999999999999999999999804344577852148735699999999999986
Q 003586 140 GIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEK 219 (809)
Q Consensus 140 Gl~~e~~~e~~l~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~ 219 (809)
|+|+|.+++ +.|.++ ++|++++++.+++++++||+++||+|+++|++++|.+.++++|.+|+++
T Consensus 83 Glpie~~a~----k~g~~~------------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~k 146 (878)
T 2v0c_A 83 GLPAENAAL----KFGVHP------------KDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEK 146 (878)
T ss_dssp SHHHHHHHH----HTTCCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHH----HCCCCH------------HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHC
T ss_conf 589999999----839999------------9999999999999999968863767773458889999999999999978
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCC--C-CC---------------------------------------------
Q ss_conf 96566574652389999645731101245--7-89---------------------------------------------
Q 003586 220 GLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E-PG--------------------------------------------- 251 (809)
Q Consensus 220 Gliy~~~~~v~w~p~~~t~ls~~Ev~~~~--~-~~--------------------------------------------- 251 (809)
|+||++.++|+|||.|+|+|||+||++.. . .+
T Consensus 147 GliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~ 226 (878)
T 2v0c_A 147 GLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGR 226 (878)
T ss_dssp TCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCE
T ss_pred CCEEECCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCEEEEECCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 99897462388738889886899985687755689851787503236762356899998764267978999999987455
Q ss_pred -CEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHC-----------------------------------
Q ss_conf -13899999659870699982688523679489988999202110-----------------------------------
Q 003586 252 -TLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF----------------------------------- 295 (809)
Q Consensus 252 -~~~~~~f~~~~~~~~l~v~TtrPetl~~~~ai~v~p~~~~y~~l----------------------------------- 295 (809)
..++++|++.+.+.+++|||||||||+|++||+|||+++++..+
T Consensus 227 s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 306 (878)
T 2v0c_A 227 SEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVF 306 (878)
T ss_dssp EEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCHHHHCCEEEEECCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 66715998835888569998378445507479998679743201226256899999999976433355531244013476
Q ss_pred CCCEEECCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEECCCC---------CCCCC-----C
Q ss_conf 148556678999814397458744567899443068999346999999199903204799---------85223-----3
Q 003586 296 IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD---------GTLNE-----V 361 (809)
Q Consensus 296 ~g~~~~~P~~~~~~vpii~~~~V~~~~GtG~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~---------G~~~e-----~ 361 (809)
+|.+++||+ .++++||+.++||++++|||+||+|||||++||+++++||||++++++.+ |.+++ +
T Consensus 307 ~g~~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~n 385 (878)
T 2v0c_A 307 LGAYALNPA-TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVN 385 (878)
T ss_dssp EEEEEECTT-TCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECS
T ss_pred CCCEEECCC-CCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 186897778-8987689982763578998607967889877899999859981455578775543110014457705843
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCHHHHHHHHHHHCCCCEEECCH
Q ss_conf 56348998899999999999977990013032246763236997168801131125053789999999863980475501
Q 003586 362 AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPER 441 (809)
Q Consensus 362 ~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~ 441 (809)
+|.|.||.+++|+++|++.|+++|++.+. +++
T Consensus 386 s~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~--------------------------------------------v~~---- 417 (878)
T 2v0c_A 386 SGPFDGTESEEGKRKVIAWLEEKGLGKGR--------------------------------------------VTY---- 417 (878)
T ss_dssp SGGGTTCBHHHHHHHHHHHHHHHTSEEEE--------------------------------------------EEE----
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCC--------------------------------------------EEE----
T ss_conf 77779959999999999999977998772--------------------------------------------687----
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCCCEEECC--------CHHH----------HHHHHHH----HC-C
Q ss_conf 4889999971587622102564431103999827865189808--------9358----------9999755----15-9
Q 003586 442 FEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVAR--------NADE----------ALEKAHQ----KY-G 498 (809)
Q Consensus 442 ~~~~~~~~l~~l~DW~ISRq~~WG~piP~~~~~~~~~~~~~~~--------~~~~----------~~~~~~~----~~-~ 498 (809)
+|+|||||||||||+|||+|||+. ++...+.. ..++ ++....+ .| .
T Consensus 418 ----------rlrDW~ISRQR~WG~PIPi~~~~~-~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~ 486 (878)
T 2v0c_A 418 ----------RLRDWLISRQRYWGTPIPMVHCEA-CGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPK 486 (878)
T ss_dssp ----------SCCCEECEESCSSSEECCEEEETT-TEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTT
T ss_pred ----------ECCCCHHHCCCCCCCCCCEEEECC-CCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf ----------632130000145688540899879-975856779743002004431033667989556427652776777
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCEECCCCCCC-----HHHHHHCCCCCEEEEEEH--HHHHHHHHHHH---HHHH-HCCC
Q ss_conf 98532115875420002567433003799999-----445520089747784003--57758999999---9987-4199
Q 003586 499 KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVARMVM---MGIE-FTGS 567 (809)
Q Consensus 499 ~~~~~~~~~dvld~WfdS~l~~~~~~~~~~~~-----~~~f~~~~P~d~~~~G~D--i~~~w~~~~~~---~~~~-l~~~ 567 (809)
++..++|++|||||||||| ||++.+++|+++ ++++++|||+|+|++|.| ++|+|++|+.. .+.+ +.++
T Consensus 487 cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~ 565 (878)
T 2v0c_A 487 CGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVE 565 (878)
T ss_dssp TCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCS
T ss_pred CCCCCEECCCCCCCCCCCC-CHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8876254366434212342-343302585322465697887168997498835678788999999999999872403578
Q ss_pred CCCEEEEEEEEEECC----------------------------------------------CC-------CCCCCCCCCC
Q ss_conf 872159994268856----------------------------------------------89-------7221134676
Q 003586 568 VPFSHVYLHGLIRDS----------------------------------------------QG-------RKMSKTLGNV 594 (809)
Q Consensus 568 ~Pf~~v~~hg~vld~----------------------------------------------~G-------~KMSKS~GN~ 594 (809)
+||+++++||||++. +| +|||||+||+
T Consensus 566 ~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNv 645 (878)
T 2v0c_A 566 EPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNG 645 (878)
T ss_dssp CSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCC
T ss_pred CCHHHHEECCEEECCCEECCCCCCCCCEECCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCC
T ss_conf 75374533664866634416666543100033222222346730221013554320002579970245678762167873
Q ss_pred CCHHHHHHHHCCCHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCHHHH
Q ss_conf 693557976187268898860-898875234688889899999999999999987189-998514699986301312443
Q 003586 595 IDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLP-SQNDISRWEILLAYKFDEEEC 672 (809)
Q Consensus 595 i~p~eii~~ygaDalR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kL~N~~~f~~~~l~-~~~~~~~~~~~~~~~~~~~~~ 672 (809)
|+|.+++++||+|++|||+++ .++++|++||++.+.+.+++++|+||++++....+. .... .+
T Consensus 646 VdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~---------------~~ 710 (878)
T 2v0c_A 646 VMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGV---------------FQ 710 (878)
T ss_dssp CBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC---------------CC
T ss_pred CCHHHHHHHCCCCHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---------------CC
T ss_conf 568999987093189999860589777861589999999999999999999998515655455---------------67
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 03999315999999999999999785218868999999999999668999999644320488927789999999999999
Q 003586 673 LCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFEN 752 (809)
Q Consensus 673 ~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~vl~~ 752 (809)
...++..|+|++++++.+++.++++|++|+|++|+..+++|+ +.+ +.|.+. + . +..+++.+++.
T Consensus 711 ~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~l-~k~~~~-------~-~------~~~~l~~~l~~ 774 (878)
T 2v0c_A 711 AEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NAL-YEYRKD-------R-P------VTPVYRTAIRY 774 (878)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-HHHHHH-------C-C------SCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHH-HHHCCC-------C-H------HHHHHHHHHHH
T ss_conf 443898899999999999999999997056999999999999-998-652101-------2-3------67999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 9999603003789999999206999627248999997
Q 003586 753 ILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL 789 (809)
Q Consensus 753 l~~lL~Pi~P~iaeelw~~L~~~~~sv~~~~wP~~~~ 789 (809)
+++||+|||||+|||||+.|+ .+||+.++||..++
T Consensus 775 l~~LLaPf~P~~aEElw~~Lg--~~sv~~~~wP~~d~ 809 (878)
T 2v0c_A 775 YLQMLFPFAPHLAEELWHWFW--PDSLFEAGWPELDE 809 (878)
T ss_dssp HHHHHTTTSHHHHHHHHHHHC--SSCGGGSCCCCCCG
T ss_pred HHHHHCCCCHHHHHHHHHHCC--CCCEEECCCCCCCH
T ss_conf 999973300599999999728--88534057998997
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=1091.59 Aligned_cols=674 Identities=22% Similarity=0.369 Sum_probs=554.5
Q ss_pred CCCCH-HHHHHHHHHHHHCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99991-5699999999966997778779--99998995899988997860045787799999999998799602259899
Q 003586 61 KTFDF-TSEERIYNWWESQGYFKPNFER--GSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTD 137 (809)
Q Consensus 61 ~~~~~-~~E~~~~~~W~~~~~f~~~~~~--~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D 137 (809)
..|++ ++|++||++|+++++|++..+. ++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98997887799999998679801470023789828998589988899825521257889999999982898507677358
Q ss_pred CCCCCHHHHHHHHHHHCCCC--------CCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHH
Q ss_conf 88973379999999982999--------423588999--999999999999999999998043445778521487--356
Q 003586 138 HAGIATQLVVEKMLAAEGIK--------RVELSRDEF--TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQL 205 (809)
Q Consensus 138 ~~Gl~~e~~~e~~l~~~g~~--------~~~~~~e~f--~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d--~~~ 205 (809)
|||+|++..+++... +.. ...+.++++ ...|++|++++.+.+++++++||+++||+++|+|+| +.|
T Consensus 82 ~~G~pie~~a~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~ 159 (810)
T 1wkb_A 82 ITGSPIVGIAERIKN--RDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPF 159 (810)
T ss_dssp CCBSHHHHHHHHHHT--TCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHH
T ss_pred CCCCHHHHHHHHHCC--CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEEECCCCHHH
T ss_conf 989768999998503--671389999987099777878788799999999999999999818588369960765786679
Q ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC--EEEEEEEECCCC--EEEEEEECCCCCCCCCC
Q ss_conf 99999999999986965665746523899996457311012457891--389999965987--06999826885236794
Q 003586 206 SRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGT--LYYIKYRVAGRS--DFLTIATTRPETLFGDV 281 (809)
Q Consensus 206 ~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~~~~~~~~--~~~~~f~~~~~~--~~l~v~TtrPetl~~~~ 281 (809)
.+.++++|.+|+++|+||++.++|+|||.|+|+|||+||++.+..+. .++++|++.+.+ .+++|||||||||+|++
T Consensus 160 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~ 239 (810)
T 1wkb_A 160 SKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVT 239 (810)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 99999999999987998987743212587588952878845988765414899997068877569999838843765441
Q ss_pred EEEECCCCC-------------------------HH-------------HHCCCCEEECCCCCCCEEEEEECCCCCCCCC
Q ss_conf 899889992-------------------------02-------------1101485566789998143974587445678
Q 003586 282 ALAVNPQDE-------------------------HY-------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFG 323 (809)
Q Consensus 282 ai~v~p~~~-------------------------~y-------------~~l~g~~~~~P~~~~~~vpii~~~~V~~~~G 323 (809)
||+|||+.+ +| .+|+|++++||+ .++.+||++++||++++|
T Consensus 240 av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~ipi~~~~~V~~~~G 318 (810)
T 1wkb_A 240 NMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPV-SGDEVIILPAEFVDPDNA 318 (810)
T ss_dssp EEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSS-SCCEEEEEECTTSCTTST
T ss_pred EEEECCCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCEEEEEEEECHHHCCCEEECCC-CCCEEEEEECCCCCCCCC
T ss_conf 7998899847999946987524664189999999854046399999980440699887899-997357984482648988
Q ss_pred CCCEEECCCCCHHHHHH----------HHHHCCC--------CEEECCC-------------------------------
Q ss_conf 99443068999346999----------9991999--------0320479-------------------------------
Q 003586 324 TGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK------------------------------- 354 (809)
Q Consensus 324 tG~v~~~P~h~~~D~~~----------~~~~~l~--------~~~~~~~------------------------------- 354 (809)
||+||+|||||++||++ +++|||| ++++++.
T Consensus 319 TG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~ 398 (810)
T 1wkb_A 319 TGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATK 398 (810)
T ss_dssp TSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCHHHHHHCCCCHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 30388578799889999875121145798729970212555612123157755431233333216777320456666666
Q ss_pred --------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEE-ECCCEEEECCH--HH
Q ss_conf --------98522335634899889999999999997799001303224676323699716880-11311250537--89
Q 003586 355 --------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTMEP--LA 423 (809)
Q Consensus 355 --------~G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~~~-~~~qwfi~~~~--~~ 423 (809)
+|.++ +|.|.|+.+++|++.|++.|+++|++.+.+.+.+ +|+|+|||+|++.+ +++|||+++++ ++
T Consensus 399 ~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~ 475 (810)
T 1wkb_A 399 TIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWK 475 (810)
T ss_dssp HHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCHHHH
T ss_pred HHHHCCCCCCEEE--CCCCCCEEHHHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCCCCEEEEEECCCCEEEECCHHHHH
T ss_conf 6543025683694--2574982889869999999995897266776488-974889998799972577425865817779
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCEEE---EEEECCCCCC--EEECCCHHHHHHHHHHHCC
Q ss_conf 9999998639804755014889999971587622102564431103---9998278651--8980893589999755159
Q 003586 424 EKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIP---VWYIVGKEEE--YIVARNADEALEKAHQKYG 498 (809)
Q Consensus 424 ~~~~~~i~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~piP---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 498 (809)
++++++++ +++|+|++.++++.+|+++++||||||||+||+||| .|.++...+. |+.............+..|
T Consensus 476 ~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~ 553 (810)
T 1wkb_A 476 EKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK 553 (810)
T ss_dssp HHHHHHHH--TSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHC--CCEEECCCHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHCC
T ss_conf 99986033--5589870001448988632567314556888872886766002567787046412321788987676539
Q ss_pred CCCCCCCCCCCCCEEECC----CC-CCCE-ECCCCCCC----HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 985321158754200025----67-4330-03799999----44552008974778400357758999999998741998
Q 003586 499 KNVEIYQDPDVLDTWFSS----AL-WPFS-TLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 568 (809)
Q Consensus 499 ~~~~~~~~~dvld~WfdS----~l-~~~~-~~~~~~~~----~~~f~~~~P~d~~~~G~Di~~~w~~~~~~~~~~l~~~~ 568 (809)
... -.-.++++|+||.+ +. +++. .+|+|... +++|++|||+|+|++|+||+++|...+++.+.++.+..
T Consensus 554 ~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~ 632 (810)
T 1wkb_A 554 LDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREE 632 (810)
T ss_dssp CCG-GGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCGG
T ss_pred CCH-HHCCCCCEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 997-8949542046401665667600064540998899976289987228844873030412008999999999972965
Q ss_pred CC-EEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72-159994268856897221134676693557976187268898860-8988752346888898999999999999999
Q 003586 569 PF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL-GTAGQDLSLSIERLTANKAFTNKLWNAGKFI 646 (809)
Q Consensus 569 Pf-~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s-~~~~~d~~fs~~~l~~~~~~~~kL~N~~~f~ 646 (809)
|+ +.+++|||++ .+|+|||||+||+|+|.+++++||+|++||||++ .++++|++||++.+...+++++|+||+++++
T Consensus 633 ~~pk~v~~~G~v~-~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~ 711 (810)
T 1wkb_A 633 HWPKGIAVNGFGT-LEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF 711 (810)
T ss_dssp GSCCEEEEECCEE-ETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEE-ECCEEHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2365799976998-477041211788389899987729689999998468988885338899999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87189998514699986301312443039993159999999999999997852188689999999999996689999996
Q 003586 647 LQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEAS 726 (809)
Q Consensus 647 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~~~n~Yie~~ 726 (809)
.+.. .. ....++..|+|++++++.+++.+.++|++|+|+.|+.+++.+++ ..+|+|++.+
T Consensus 712 ~~~~---~~----------------~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~-~~~n~yi~~~ 771 (810)
T 1wkb_A 712 AEYE---VK----------------GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIM-NDLRWYLRRT 771 (810)
T ss_dssp HTCC---CC----------------SCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHH-HHHHHHHHHT
T ss_pred HHCC---CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 7356---76----------------53327888999999999999999999982499999999999999-9999999874
Q ss_pred HHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 4432048892778999-9999999999999960300378999999920
Q 003586 727 KARLYRSEYDSDAIIA-QAVLLYIFENILKLLHPFMPFVTEELWQSLR 773 (809)
Q Consensus 727 k~~~~~~~~~~~~~~~-~~~l~~vl~~l~~lL~Pi~P~iaeelw~~L~ 773 (809)
|++ + + ++ +.+++.+++.+++||+|||||+|||||++|+
T Consensus 772 k~~-----~---~-~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 772 EGR-----D---D-EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp TTC-----C---C-HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred CCC-----C---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 572-----1---5-5799999999999999985562088999999639
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=1.00 E-value=1 Score=775.78 Aligned_cols=496 Identities=21% Similarity=0.285 Sum_probs=407.1
Q ss_pred CCEEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99899589998899786004578-77999999999987996022598998897337999999998299942358899999
Q 003586 90 DPFVISMPPPNVTGSLHMGHAMF-VTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTK 168 (809)
Q Consensus 90 ~~f~i~~~pPy~nG~lHiGH~~~-~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~e~~~e~~l~~~g~~~~~~~~e~f~~ 168 (809)
++|+|++|||||||.|||||+++ ++++|+++||+||+||+|+|++|||+||+|||.++++ +|+++.
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k----~G~~p~--------- 68 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK----EGRSPR--------- 68 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH----HTCCHH---------
T ss_pred CCEEEECCCCCCCCCHHHCHHHCCHHHHHHHHHHHHHCCCCEEECCEECCCCHHHHHHHHH----CCCCHH---------
T ss_conf 8789953898899840003021118999999999996699657136037887899999998----599999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999980434457785214873569999999999998696566574652389999645731101245
Q 003586 169 RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE 248 (809)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~~~~ 248 (809)
++++++++.+++++++||+++|| .+.|+++.|.+.++++|.+|+++|+||+++++|+|||.|+|+|+|.+|+
T Consensus 69 ---e~~~~~~~~~~~~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~--- 140 (722)
T 1rqg_A 69 ---EIVDEFHEQIKITFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI--- 140 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC---
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCC--CEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCHHHCC---
T ss_conf ---99999999999999980997899--7268888899999999999997897894116660218889685434303---
Q ss_pred CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf 78913899999659870699982688523679489988999202110148556678999814397458744567899443
Q 003586 249 EPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLK 328 (809)
Q Consensus 249 ~~~~~~~~~f~~~~~~~~l~v~TtrPetl~~~~ai~v~p~~~~y~~l~g~~~~~P~~~~~~vpii~~~~V~~~~GtG~v~ 328 (809)
||
T Consensus 141 --------------------------------------------------------------------------gt---- 142 (722)
T 1rqg_A 141 --------------------------------------------------------------------------GT---- 142 (722)
T ss_dssp --------------------------------------------------------------------------SB----
T ss_pred --------------------------------------------------------------------------CC----
T ss_conf --------------------------------------------------------------------------32----
Q ss_pred ECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 06899934699999919990320479985223356348998899999999999977990013032246763236997168
Q 003586 329 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIE 408 (809)
Q Consensus 329 ~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~i~ 408 (809)
||.++.+ +..|.+|++||.. .++.++.+|+|||||++++
T Consensus 143 -cP~c~~~----------------~~~Gd~c~~~G~~------------------------l~~~~l~~p~~~r~g~~v~ 181 (722)
T 1rqg_A 143 -CPYCGAE----------------DQKGDQCEVCGRP------------------------LTPEILINPRCAICGRPIS 181 (722)
T ss_dssp -CSSSCCS----------------CCCTTTCSSSCCC------------------------CCTTSSBSCBCTTTCCBCE
T ss_pred -CCCCCCC----------------CCCCCHHHHCCCC------------------------CCHHHCCCCCCCCCCCEEE
T ss_conf -6766775----------------6786355413662------------------------6855503886468796769
Q ss_pred EEECCCEEEECCHHHHHHHHHHHCCCCEEECCHHHHHHHHHH-HCCCCEEEECCCCCCCEEEEEEECCCCCCEEECCCHH
Q ss_conf 801131125053789999999863980475501488999997-1587622102564431103999827865189808935
Q 003586 409 PLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 487 (809)
Q Consensus 409 ~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l-~~l~DW~ISRq~~WG~piP~~~~~~~~~~~~~~~~~~ 487 (809)
++.++||||++++++++++++++++. .|++.++++.+|| ++++|||||||++||+|||+|++ +
T Consensus 182 ~~~~~qwF~~l~~~~~~l~~~~~~~~---wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~-g------------ 245 (722)
T 1rqg_A 182 FRDSAHYYIKMQDFAERLKRWIEKQP---WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE-D------------ 245 (722)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHSSC---CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS-S------------
T ss_pred EEEECCEEEEHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCC-C------------
T ss_conf 99815289985999999999998589---9989999999999779865532413568605586246-8------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEECC-CCCCC--HHHHHHCCCC-C-----EEEEEEHHHHH----HH
Q ss_conf 89999755159985321158754200025674330037-99999--4455200897-4-----77840035775----89
Q 003586 488 EALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLG-WPDVS--ADDFKKFYPT-T-----MLETGHDILFF----WV 554 (809)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~dvld~WfdS~l~~~~~~~-~~~~~--~~~f~~~~P~-d-----~~~~G~Di~~~----w~ 554 (809)
-+.+++|||||+.+.|.+..+ |+... ..+|+.|||. | ++++|+||++| |+
T Consensus 246 -----------------~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wp 308 (722)
T 1rqg_A 246 -----------------MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWP 308 (722)
T ss_dssp -----------------STTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHH
T ss_pred -----------------CCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHH
T ss_conf -----------------999889997324211134477877640980188763488899971688736654543032428
Q ss_pred HHHHHHHH-----HHCC-CCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCCCCHH
Q ss_conf 99999998-----7419-9872159994268856897221134676693557976187268898860898-875234688
Q 003586 555 ARMVMMGI-----EFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIE 627 (809)
Q Consensus 555 ~~~~~~~~-----~l~~-~~Pf~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s~~~-~~d~~fs~~ 627 (809)
+.++..+. .+.+ .+| +++++|||+++ +|+|||||+||+|+|.+++++||+|++||||++..+ ++|++|+++
T Consensus 309 A~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~ 386 (722)
T 1rqg_A 309 AFLMAYGKYKDEEVEAEWNLP-YDIPANEYLTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFS 386 (722)
T ss_dssp HHHHTTCCBCSSSCCBCBCCC-SBCCEECCEEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHH
T ss_pred HHHHCCCCCCCCCCCCCCCCC-CEEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 999605887443324698888-88998506994-8836400089768799999864946999999844998888835889
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 8898--999999999999999871899-9851469998630131244303999315999999999999999785218868
Q 003586 628 RLTA--NKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFG 704 (809)
Q Consensus 628 ~l~~--~~~~~~kL~N~~~f~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~ 704 (809)
.+.. +..++++++|+++++...+.. +.. ..+....+...|+|++++++.+++.+.++|++|+|+
T Consensus 387 ~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~-------------~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~ 453 (722)
T 1rqg_A 387 DFKVRINEELVNNLGNFVHRALTFVNRYFDG-------------VVPERGELDELDREALEEIEKAFKEVGELIMNYRFK 453 (722)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHHSTT-------------BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9999988999999999999999999985378-------------888865578889999999999999999999835799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999999966899999964432048892778999999999999999996030037899999992069
Q 003586 705 DVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 775 (809)
Q Consensus 705 ~a~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~vl~~l~~lL~Pi~P~iaeelw~~L~~~ 775 (809)
.|++.+++|+ +++|+|++..+||.+.+++....+...++++++++.+++||+|||||+||+||++|+..
T Consensus 454 ~A~~~i~~~~--~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 454 DALKRVMSLA--SFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp HHHHHHHHHH--HHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH--HHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 9999999999--99999998547253237899999999999999999999986122547899999974997
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=1.00 E-value=1 Score=772.08 Aligned_cols=485 Identities=20% Similarity=0.241 Sum_probs=402.3
Q ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99999899589998899786004578779999999999879960225989988973379999999982999423588999
Q 003586 87 RGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEF 166 (809)
Q Consensus 87 ~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~e~~~e~~l~~~g~~~~~~~~e~f 166 (809)
+..|+|+|++|||||||.||||||++++++|+++||+||+||+|+|++||||||+|||.++ .++|+++.
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a----~k~g~~~~------- 74 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA----KQKQVSPY------- 74 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHH----HHTTSCHH-------
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH----HHCCCCHH-------
T ss_conf 8899889838998889854567789999999999999941997404483273769999999----98499999-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999999804344577852148735699999999999986965665746523899996457311012
Q 003586 167 TKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEY 246 (809)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~~ 246 (809)
++++++++.+++++++||+++||. +.|+|++|.+.|+++|.+|+++|+||++.++|+|||.|+|+|+|.||+.
T Consensus 75 -----e~~~~~~~~~~~~~~~lgi~~D~~--~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~ 147 (542)
T 3u1f_A 75 -----DFTTAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITD 147 (542)
T ss_dssp -----HHHHHHHHHHHHHHHHHTCCCSEE--EETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred -----HHHHHHHHHHHHHHHHHCCCCCCC--CCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCHHHHHHC
T ss_conf -----999999999999999939946758--6479889999999999999656967960114886046763001234201
Q ss_pred CCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 45789138999996598706999826885236794899889992021101485566789998143974587445678994
Q 003586 247 SEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGV 326 (809)
Q Consensus 247 ~~~~~~~~~~~f~~~~~~~~l~v~TtrPetl~~~~ai~v~p~~~~y~~l~g~~~~~P~~~~~~vpii~~~~V~~~~GtG~ 326 (809)
.
T Consensus 148 ~------------------------------------------------------------------------------- 148 (542)
T 3u1f_A 148 G------------------------------------------------------------------------------- 148 (542)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
T ss_conf 1-------------------------------------------------------------------------------
Q ss_pred EEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCE
Q ss_conf 43068999346999999199903204799852233563489988999999999999779900130322467632369971
Q 003586 327 LKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEV 406 (809)
Q Consensus 327 v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~~ 406 (809)
|+ +.| +.+++|+|||++
T Consensus 149 ---~~----------------------~~g--------------------------------------~~~~~~~~sg~~ 165 (542)
T 3u1f_A 149 ---VD----------------------KDG--------------------------------------NPCKVSLESGHV 165 (542)
T ss_dssp ---EC----------------------TTS--------------------------------------CEEEEETTTCCB
T ss_pred ---CC----------------------CCC--------------------------------------CCCCCCCCCCCC
T ss_conf ---13----------------------467--------------------------------------654555789980
Q ss_pred EEEEECCCEEEECCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHH-CCCCEEEECCCC----CCCEEEEEEECCCCCCEE
Q ss_conf 688011311250537899999998639804755014889999971-587622102564----431103999827865189
Q 003586 407 IEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQLW----WGHRIPVWYIVGKEEEYI 481 (809)
Q Consensus 407 i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISRq~~----WG~piP~~~~~~~~~~~~ 481 (809)
++++.++|||++++++++++++++.+++..+.|+..++.+.+|++ +++||||||||+ ||+|||..
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~---------- 235 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGN---------- 235 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE----------
T ss_pred CEEECCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----------
T ss_conf 0243154210012157899987775046666872456767554540564467455556767789865888----------
Q ss_pred ECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCC---------HHHHHHCCCCCEEEEEEHHHHH
Q ss_conf 8089358999975515998532115875420002567433003799999---------4455200897477840035775
Q 003586 482 VARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS---------ADDFKKFYPTTMLETGHDILFF 552 (809)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~dvld~WfdS~l~~~~~~~~~~~~---------~~~f~~~~P~d~~~~G~Di~~~ 552 (809)
+..++++|||+...+.+..++.... .......||+|++++|+||++|
T Consensus 236 ------------------------~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~f 291 (542)
T 3u1f_A 236 ------------------------PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKF 291 (542)
T ss_dssp ------------------------EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHH
T ss_pred ------------------------CCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCC
T ss_conf ------------------------67202565203101112443153345886445420566607952188723005633
Q ss_pred ----HHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCC-CCCCCCCHH
Q ss_conf ----899999999874199872159994268856897221134676693557976187268898860898-875234688
Q 003586 553 ----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIE 627 (809)
Q Consensus 553 ----w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s~~~-~~d~~fs~~ 627 (809)
|++++++. +..|++.+++||++. .+|+|||||+||+|+|.+++++||+|+|||||++.++ ++|++|+++
T Consensus 292 h~~~~~a~l~~~-----g~~~~~~v~~hg~l~-~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~ 365 (542)
T 3u1f_A 292 HAIYWPAFLLSA-----GLPLPKKIVAHGWWT-KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDK 365 (542)
T ss_dssp HHTHHHHHHHHH-----TCCCCSCEEEECCCE-ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHH
T ss_pred CCCHHHHHHHHH-----CCCCCCEECCCCCEE-CCCCEECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 531148998763-----135652010364161-48835030468878856787606930889999852863346546688
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 8898--99999999999999987189998514699986301312443039993159999999999999997852188689
Q 003586 628 RLTA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 705 (809)
Q Consensus 628 ~l~~--~~~~~~kL~N~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 705 (809)
.+.. ++.++|+|||+++++......... ..+....++..|+|++++++.+++.+.++|++|+|+.
T Consensus 366 ~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~-------------~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~ 432 (542)
T 3u1f_A 366 NMIARLNGELADTLGNLVMRCTSAKINVNG-------------EWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQK 432 (542)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHCTTTSTTS-------------BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 878876557777787999999975110257-------------7786200027799999876424777777888789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC---CCEEEC
Q ss_conf 99999999999668999999644320488927789999999999999999960300378999999920699---962724
Q 003586 706 VGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRK---EALIVS 782 (809)
Q Consensus 706 a~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~vl~~l~~lL~Pi~P~iaeelw~~L~~~~---~sv~~~ 782 (809)
|++.|++|+ +++|+|++..+||...+++....+++.+++.++++.+++||+|||||+||+||++|+... .++...
T Consensus 433 a~~~i~~~~--~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~~ 510 (542)
T 3u1f_A 433 AIIAVFDVL--RAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIENF 510 (542)
T ss_dssp HHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGGG
T ss_pred HHHHHHHHH--HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 999999999--999999996586644358999999999999999999999998696799999999879997655552331
Q ss_pred CCCC
Q ss_conf 8999
Q 003586 783 PWPQ 786 (809)
Q Consensus 783 ~wP~ 786 (809)
.|+.
T Consensus 511 ~~~~ 514 (542)
T 3u1f_A 511 EFGA 514 (542)
T ss_dssp STTC
T ss_pred CCCC
T ss_conf 0257
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=1.00 E-value=1 Score=725.40 Aligned_cols=494 Identities=21% Similarity=0.362 Sum_probs=410.8
Q ss_pred CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 79999989958999889978600457877999999999987996022598998897337999999998299942358899
Q 003586 86 ERGSDPFVISMPPPNVTGSLHMGHAMFVTLEDIMVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDE 165 (809)
Q Consensus 86 ~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~V~~~~G~D~~Gl~~e~~~e~~l~~~g~~~~~~~~e~ 165 (809)
..++++|++++|||||||.|||||+++++++|+++||+||+|++|++++|||+||+|++..+++ .|.++.
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~----~g~~~~------ 83 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ----LGITPE------ 83 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH----HTSCHH------
T ss_pred CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHH----HCCCHH------
T ss_conf 8999848996899989998465467999999999999997098178742146768099999998----198999------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999999980434457785214873569999999999998696566574652389999645731101
Q 003586 166 FTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE 245 (809)
Q Consensus 166 f~~~~~~~~~~~~~~~~~~l~~lg~~~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~w~p~~~t~ls~~Ev~ 245 (809)
++++++.+.+++++++||+++| +.+.|+++.|.+.++++|.+|+++|+||++++.++||+.|+|+|++.+|+
T Consensus 84 ------~~~~~~~~~~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~ 155 (560)
T 3h99_A 84 ------QMIGEMSQEHQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK 155 (560)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE
T ss_pred ------HHHHHHHHHHHHHHHHCCCCCC--CCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEECCHHCC
T ss_conf ------9999999999999998399988--84327987899999999999998899897524686447657650422127
Q ss_pred CCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 24578913899999659870699982688523679489988999202110148556678999814397458744567899
Q 003586 246 YSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTG 325 (809)
Q Consensus 246 ~~~~~~~~~~~~f~~~~~~~~l~v~TtrPetl~~~~ai~v~p~~~~y~~l~g~~~~~P~~~~~~vpii~~~~V~~~~GtG 325 (809)
|
T Consensus 156 -----------------------------------------------------------------------------g-- 156 (560)
T 3h99_A 156 -----------------------------------------------------------------------------G-- 156 (560)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------C--
T ss_conf -----------------------------------------------------------------------------8--
Q ss_pred CEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 44306899934699999919990320479985223356348998899999999999977990013032246763236997
Q 003586 326 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGE 405 (809)
Q Consensus 326 ~v~~~P~h~~~D~~~~~~~~l~~~~~~~~~G~~~e~~g~~~g~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~c~r~~~ 405 (809)
.||.++ ..++.|..|++||.+ ..+.++..|+|++||.
T Consensus 157 ---~cp~c~----------------~~~~~gd~ce~cg~~------------------------~~~~~l~~~~~~~~g~ 193 (560)
T 3h99_A 157 ---TCPKCK----------------SPDQYGDNCEVCGAT------------------------YSPTELIEPKSVVSGA 193 (560)
T ss_dssp ---ECTTTC----------------CSSEETTBCTTTCCB------------------------CCGGGCEEEEETTTCC
T ss_pred ---CCCCCC----------------CCCCCCCHHHHCCCC------------------------CCHHHHCCCCCCCCCC
T ss_conf ---788888----------------854556310220455------------------------7846502775555788
Q ss_pred EEEEEECCCEEEECCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHH-CCCCEEEECCC-CCCCEEEEEEECCCCCCEEEC
Q ss_conf 1688011311250537899999998639804755014889999971-58762210256-443110399982786518980
Q 003586 406 VIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVA 483 (809)
Q Consensus 406 ~i~~~~~~qwfi~~~~~~~~~~~~i~~~~~~~~P~~~~~~~~~~l~-~l~DW~ISRq~-~WG~piP~~~~~~~~~~~~~~ 483 (809)
+++++.++|||++++++++.++++++++ .+|+..++.+.+|++ +++|||||||+ +||+|||. +
T Consensus 194 ~~~~~~~~~~f~~l~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~-------~----- 258 (560)
T 3h99_A 194 TPVMRDSEHFFFDLPSFSEMLQAWTRSG---ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN-------A----- 258 (560)
T ss_dssp CCEEEEEEEEEECGGGGHHHHHHHHHTS---CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT-------C-----
T ss_pred CCEEEECCEEEEEHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCC-------C-----
T ss_conf 8658743628988799799999999818---989899999999985699887755668867856799-------8-----
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEC-CCCCCC--HHHHHHCCCCC-----EEEEEEHHHH----
Q ss_conf 89358999975515998532115875420002567433003-799999--44552008974-----7784003577----
Q 003586 484 RNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSALWPFSTL-GWPDVS--ADDFKKFYPTT-----MLETGHDILF---- 551 (809)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~dvld~WfdS~l~~~~~~-~~~~~~--~~~f~~~~P~d-----~~~~G~Di~~---- 551 (809)
+.+|+|||||+.++|++.+ +|+... ..+|++|||.| ++++|+||++
T Consensus 259 ----------------------~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~ 316 (560)
T 3h99_A 259 ----------------------PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSL 316 (560)
T ss_dssp ----------------------TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHT
T ss_pred ----------------------CCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
T ss_conf ----------------------9965896856504199999887651487214887276778852688850442402899
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCC-C-CCCCCCHHHH
Q ss_conf 5899999999874199872159994268856897221134676693557976187268898860898-8-7523468888
Q 003586 552 FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERL 629 (809)
Q Consensus 552 ~w~~~~~~~~~~l~~~~Pf~~v~~hg~vld~~G~KMSKS~GN~i~p~eii~~ygaDalR~~l~s~~~-~-~d~~fs~~~l 629 (809)
+|++++++++. .+| +++++||++++ +|+|||||+||+|+|.+++++||+|++||||++..+ + +|++|+++.+
T Consensus 317 ~~~a~l~~~g~----~~p-~~v~~hg~v~~-~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~ 390 (560)
T 3h99_A 317 FWPAMLEGSNF----RKP-SNLFVHGYVTV-NGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDF 390 (560)
T ss_dssp HHHHHHHHTTB----CCC-SEEEEECCEEE-TTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHH
T ss_pred HHHHHHHHCCC----CCC-CEEEEEEEEEE-CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 99999996799----998-68998767985-7802046089868899999876818999999974899877887699999
Q ss_pred HH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98--9999999999999998718999851469998630131244303999315999999999999999785218868999
Q 003586 630 TA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVG 707 (809)
Q Consensus 630 ~~--~~~~~~kL~N~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~ 707 (809)
.. ++++++++||++.++...+..... .. ......|+|++++++.+++.+.++|++|+|+.|+
T Consensus 391 ~~~~~~~l~~~l~n~~~R~~~~~~~~~~-------------~~---~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~ 454 (560)
T 3h99_A 391 VQRVNADIVNKVVNLASRNAGFINKRFD-------------GV---LASELADPQLYKTFTDAAEVIGEAWESREFGKAV 454 (560)
T ss_dssp HHHHHHHCCCCCTHHHHTTHHHHHHHST-------------TB---CCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CC---CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999999999999999999988538-------------98---8986135999999999999999999755899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 999999999668999999644320488--927789999999999999999960300378999999920699962724899
Q 003586 708 RETYDFFWSDFADWYIEASKARLYRSE--YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWP 785 (809)
Q Consensus 708 ~~i~~f~~~~~~n~Yie~~k~~~~~~~--~~~~~~~~~~~l~~vl~~l~~lL~Pi~P~iaeelw~~L~~~~~sv~~~~wP 785 (809)
+.+++|+ +++|+|++..++|...++ +...+..+..+++.+++.+++||+|||||+||+||++|+.. ..||
T Consensus 455 ~~l~~l~--~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~------~~w~ 526 (560)
T 3h99_A 455 REIMALA--DLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE------LTWD 526 (560)
T ss_dssp HHHHHHH--HHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC------CCTG
T ss_pred HHHHHHH--HHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC------CCHH
T ss_conf 9999999--9999999826856551786769999999999999999999998231427999999980899------7725
Q ss_pred C
Q ss_conf 9
Q 003586 786 Q 786 (809)
Q Consensus 786 ~ 786 (809)
.
T Consensus 527 ~ 527 (560)
T 3h99_A 527 G 527 (560)
T ss_dssp G
T ss_pred H
T ss_conf 6
Done!