BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003587
(809 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359488988|ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 806
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/825 (71%), Positives = 666/825 (80%), Gaps = 35/825 (4%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKWVLEKNQFGLTFDGRKREFSA 60
MARG A +L RI SK++VSR S +C HS G +W +N FD K F
Sbjct: 1 MARGPAALLSRIRSSKHDVSRFRVFPSKRCIHSFG---EW---RNPTASAFDLSKPAFFT 54
Query: 61 SLIDTVRFHLPSGNTRFIELK----ARSFCSSVGNEGLVNNGTATKPKVEDVEQESGVN- 115
SL++ V SG+ + + AR F SS+ +G + T +ED + S ++
Sbjct: 55 SLMNLVHLQSASGSPNLRDFRNSIGARHF-SSMREDGDGDENTVPGLTIEDGDDVSSISD 113
Query: 116 --FVQGGEEDKVEVLDDYFDGSVISDSTMVESVHKN----SNQSVRFLHLSTRDPVEVFG 169
V+ G+E K DS+MVES + + S +SV + H++ RDP E++
Sbjct: 114 STMVENGDEGKSNC-----------DSSMVESGNSSDDVGSGESVGYEHVAYRDPAELYR 162
Query: 170 ELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKK 229
EL ++ AK +SD+E++ E+ F SGWAANQALA+YIG SFFPTAA KFRS+ KK
Sbjct: 163 ELCDSQTSAKPTKSDWEMVSEILHHFRKSGWAANQALAIYIGMSFFPTAASKFRSFMSKK 222
Query: 230 CPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFA 289
C DVA+YL LGP D AVKFLFPIFVEFC+EEFPDEIKRFR+MI+SADLTKPHTWFPFA
Sbjct: 223 CTADVAKYLASLGPGDAAVKFLFPIFVEFCLEEFPDEIKRFRSMIKSADLTKPHTWFPFA 282
Query: 290 RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349
R MKRKIIYHCGPTNSGKTYNALQR+MEAKKGIYCSPLRLLAMEVFDKVNALG+YCSL T
Sbjct: 283 RAMKRKIIYHCGPTNSGKTYNALQRYMEAKKGIYCSPLRLLAMEVFDKVNALGIYCSLHT 342
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
GQEKK VPFSNH +CTVEMVSTD++YDVAVIDEIQMMSD CRGYAWTRALLGL ADEIHL
Sbjct: 343 GQEKKNVPFSNHTSCTVEMVSTDDIYDVAVIDEIQMMSDPCRGYAWTRALLGLKADEIHL 402
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
CGDPSVL+VVRKICSETGDEL EQHYERFKPLVVEAKTLLG+L+NVRSGDCVVAFSRREI
Sbjct: 403 CGDPSVLNVVRKICSETGDELFEQHYERFKPLVVEAKTLLGELQNVRSGDCVVAFSRREI 462
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
FEVK+AIEKHTNH CCVIYGALPPETRRQQA+LFND DNE+DVLVASDAVGMGLNLNIRR
Sbjct: 463 FEVKLAIEKHTNHRCCVIYGALPPETRRQQASLFNDPDNEYDVLVASDAVGMGLNLNIRR 522
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF 589
VVFYSLSKYNGDKI+PVP +QVKQIAGRAGRRGS YPDGLTTTL+LDDLDYLIECLKQPF
Sbjct: 523 VVFYSLSKYNGDKIVPVPATQVKQIAGRAGRRGSRYPDGLTTTLHLDDLDYLIECLKQPF 582
Query: 590 EVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLE 649
+ +KKVGLFPFFEQVELFAGQL + T LLEKF ENC+LDGSYFLCRHDHIKKVANML+
Sbjct: 583 DDIKKVGLFPFFEQVELFAGQLPDVTLSHLLEKFSENCQLDGSYFLCRHDHIKKVANMLQ 642
Query: 650 KVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELL 709
KVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS+N PV+IAMGMPKGSA+ND+ELL
Sbjct: 643 KVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELL 702
Query: 710 DLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKP 769
DLETKHQVLSMYLWLSH F EE FPY KKAE MAT IA+LLGQSL+ A WKPESRQAGKP
Sbjct: 703 DLETKHQVLSMYLWLSHHFTEETFPYVKKAETMATGIADLLGQSLSKACWKPESRQAGKP 762
Query: 770 KLHQQREDGYDRPRSIIKSYENRKRQ-----EKTSLTLHTEKIPA 809
K QQ+EDGY+RPRS++K ++ R+ + EK H+EK+ A
Sbjct: 763 K-PQQKEDGYERPRSLVKLFDERRHEKSPEHEKFPQHEHSEKVAA 806
>gi|147834594|emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera]
Length = 906
Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/822 (71%), Positives = 663/822 (80%), Gaps = 35/822 (4%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKWVLEKNQFGLTFDGRKREFSA 60
MARG A +L RI SK++VSR S +C HS G +W +N FD K F
Sbjct: 48 MARGPAALLSRIRSSKHDVSRFRVFPSKRCIHSFG---EW---RNPTASAFDLSKPAFFT 101
Query: 61 SLIDTVRFHLPSGNTRFIE----LKARSFCSSVGNEGLVNNGTATKPKVEDVEQESGVN- 115
SL++ V SG+ + + AR F SS+ +G + T +ED + S ++
Sbjct: 102 SLMNLVHLQSASGSPNLRDFXNSIGARHF-SSMREDGDGDENTVPGLTIEDGDDVSSISD 160
Query: 116 --FVQGGEEDKVEVLDDYFDGSVISDSTMVESVHKN----SNQSVRFLHLSTRDPVEVFG 169
V+ G+E K DS+MVES + + S +SV + H++ RDP E++
Sbjct: 161 STMVENGDEGKSNC-----------DSSMVESGNSSDDVGSGESVGYEHVAYRDPAELYR 209
Query: 170 ELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKK 229
EL ++ AK +SD+E++ E+ F SGWAANQALA+YIG SFFPTAA KFRS+ KK
Sbjct: 210 ELCDSQTSAKPTKSDWEMVSEILHHFRKSGWAANQALAIYIGMSFFPTAASKFRSFMSKK 269
Query: 230 CPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFA 289
C DVA+YL LGP D AVKFLFPIFVEFC+EEFPDEIKRFR+MI+SADLTKPHTWFPFA
Sbjct: 270 CTADVAKYLASLGPGDAAVKFLFPIFVEFCLEEFPDEIKRFRSMIKSADLTKPHTWFPFA 329
Query: 290 RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349
R MKRKIIYHCGPTNSGKTYNALQR+MEAKKGIYCSPLRLLAMEVFDKVNALG+YCSL T
Sbjct: 330 RAMKRKIIYHCGPTNSGKTYNALQRYMEAKKGIYCSPLRLLAMEVFDKVNALGIYCSLHT 389
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
GQEKK VPFSNH +CTVEMVSTD++YDVAVIDEIQMMSD CRGYAWTRALLGL ADEIHL
Sbjct: 390 GQEKKNVPFSNHTSCTVEMVSTDDIYDVAVIDEIQMMSDPCRGYAWTRALLGLKADEIHL 449
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
CGDPSVL+VVRKICSETGDEL EQHYERFKPLVVEAKTLLG+L+NVRSGDCVVAFSRREI
Sbjct: 450 CGDPSVLNVVRKICSETGDELFEQHYERFKPLVVEAKTLLGELQNVRSGDCVVAFSRREI 509
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
FEVK+AIEKHTNH CCVIYGALPPETRRQQA+LFND DNE+DVLVASDAVGMGLNLNIRR
Sbjct: 510 FEVKLAIEKHTNHRCCVIYGALPPETRRQQASLFNDPDNEYDVLVASDAVGMGLNLNIRR 569
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF 589
VVFYSLSKYNGDKI+PVP +QVKQIAGRAGRRGS YPDGLTTTL+LDDLDYLIECLKQPF
Sbjct: 570 VVFYSLSKYNGDKIVPVPATQVKQIAGRAGRRGSRYPDGLTTTLHLDDLDYLIECLKQPF 629
Query: 590 EVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLE 649
+ +KKVGLFPFFEQVELFAGQL + T LLEKF ENC LDGSYFLCRHDHIKKVANML+
Sbjct: 630 DDIKKVGLFPFFEQVELFAGQLPDVTLSHLLEKFSENCXLDGSYFLCRHDHIKKVANMLQ 689
Query: 650 KVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELL 709
KVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS+N PV+IAMGMPKGSA+ND+ELL
Sbjct: 690 KVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQNLPVNIAMGMPKGSARNDSELL 749
Query: 710 DLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKP 769
DLETKHQVLSMYLWLSH F EE FPY KKAE MAT IA+LLGQSL+ A WKPESRQAGKP
Sbjct: 750 DLETKHQVLSMYLWLSHHFTEETFPYVKKAETMATGIADLLGQSLSKACWKPESRQAGKP 809
Query: 770 KLHQQREDGYDRPRSIIKSYENRKRQ-----EKTSLTLHTEK 806
K QQ+EDGY+RPRS++K ++ R+ + EK H+EK
Sbjct: 810 K-PQQKEDGYERPRSLVKLFDERRHEKSPEHEKFPQHEHSEK 850
>gi|255566773|ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223536331|gb|EEF37981.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 820
Score = 1165 bits (3013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/810 (70%), Positives = 651/810 (80%), Gaps = 28/810 (3%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKWVLEKNQFGLTFDGRKREFSA 60
MARG LFR Y SK+ +SR NQ FHS + + WVL+ FD FS
Sbjct: 1 MARGPVASLFRAYASKSKISRCRVFLYNQNFHSFRQFNNWVLQSYHLS-PFDVTCHHFST 59
Query: 61 SLIDTVRFHLPSGNTRFIELKARSFCSSVGNEGLVNNGTATKPKVEDVEQESGVNFVQGG 120
S +D + LPS N + R+F SS +G N + ++E+ V+ ++
Sbjct: 60 SFVDLINSQLPSSNYPKFTINWRTF-SSFDQDGDNKNSANS-----ELEENDTVDILENV 113
Query: 121 EEDKVEVLDDYFDGSVISDSTMV--------------------ESVHKNSNQSVRFLHLS 160
+E+ +E D + S SD +V E+ +++SN VR +++
Sbjct: 114 DENTMEDGADGVNESTFSDPLVVDNENRCVNESTFSDPLVVDDENGNQDSNDLVRKENVA 173
Query: 161 TRDPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAG 220
RD +E++ ELR+ EK + RSD++ L+E+F +F+NSGWAANQALA+YIG+SFFPTAA
Sbjct: 174 FRDAIELYRELRNAEKNDTLKRSDWDTLQEIFYYFANSGWAANQALAIYIGRSFFPTAAR 233
Query: 221 KFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLT 280
FR++F KK ++A YLV +GPSD AV+FLFPIFVE+CIEEFPDEIKRF+ M++SADL
Sbjct: 234 NFRNFFCKKSSAELALYLVSIGPSDAAVRFLFPIFVEYCIEEFPDEIKRFQGMLQSADLR 293
Query: 281 KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA 340
KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKG+YCSPLRLLAMEVFDKVNA
Sbjct: 294 KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGVYCSPLRLLAMEVFDKVNA 353
Query: 341 LGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
GVYCSL TGQEKK VPF+NH+ACTVEMVS+DE+YDVAVIDEIQMM DA RGYAWTRALL
Sbjct: 354 HGVYCSLYTGQEKKTVPFANHVACTVEMVSSDELYDVAVIDEIQMMGDAFRGYAWTRALL 413
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
GL ADEIHLCGDPSVL++VRKICSETGDEL E HY RFKPLVVEAKTLLGDL+NVRSGDC
Sbjct: 414 GLKADEIHLCGDPSVLNIVRKICSETGDELIENHYGRFKPLVVEAKTLLGDLKNVRSGDC 473
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
VVAFSRREIFEVK+ IEKHT H CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG
Sbjct: 474 VVAFSRREIFEVKLTIEKHTKHRCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 533
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNLNIRRVVF SLSKYNGDKI+ VP SQVKQIAGRAGRRGS YPDGLTTTL+LDDL+Y
Sbjct: 534 MGLNLNIRRVVFNSLSKYNGDKIVSVPASQVKQIAGRAGRRGSRYPDGLTTTLHLDDLNY 593
Query: 581 LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDH 640
LIECLKQPFE VKKVGLFPFFEQVELFAG++ N TF Q+LEKFGE+CRLDGSYFLCRHDH
Sbjct: 594 LIECLKQPFEEVKKVGLFPFFEQVELFAGKIPNITFPQMLEKFGESCRLDGSYFLCRHDH 653
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKG 700
IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS+ PV IAMGMPKG
Sbjct: 654 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQKVPVGIAMGMPKG 713
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWK 760
SA+ND ELL+LETKHQVLSMYLWLSHQFKEE FPY KKAEAMAT+IA+LLG SLT A WK
Sbjct: 714 SARNDTELLNLETKHQVLSMYLWLSHQFKEETFPYKKKAEAMATEIADLLGDSLTKARWK 773
Query: 761 PESRQAGKPKLHQQREDGYDRPRSIIKSYE 790
ESRQAGK + QQ+ DGY RP S+IK Y+
Sbjct: 774 LESRQAGKARAKQQK-DGYKRPNSLIKRYK 802
>gi|449495319|ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 795
Score = 1120 bits (2896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 555/783 (70%), Positives = 633/783 (80%), Gaps = 23/783 (2%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKW-VLEKNQFGLTFDGRKREFS 59
M RG AT L RI S+ + SR + N+ HSVG+ D +L+ N R FS
Sbjct: 1 MFRGPATTLLRISSSRKSASRFRIFTGNRLLHSVGQYDDHKILQSNPV--------RPFS 52
Query: 60 ASLIDTVRFHLPSGNTRF---IELKARSFCSSVGNEG--LVNNGTATKPKVEDVEQESGV 114
+ ++ V F L S +RF R VG E NG ++ VE ++ V
Sbjct: 53 TT-VNQVWFRLLSQRSRFGVFSSFNLRRISIPVGPEADNKDGNGVSSSNVVEVGGYDADV 111
Query: 115 NFVQGGEEDKVEV------LDDYFDGSVISDSTMVESVHKNSNQSVRFLHLSTRDPVEVF 168
E D + V + D GS++ DS +S ++S + + + DPVE++
Sbjct: 112 GKNVCFENDSMMVTGEDGCIGDSIRGSIVDDSKNGDSDLRSSKLR-NYETIKSCDPVELY 170
Query: 169 GELRSTEKG-AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFI 227
ELRS E G +K+ SD+ +L+E+F +F +SGWA+NQAL +YIG SFFPTA KFR++F+
Sbjct: 171 SELRSVEMGGSKVELSDWLILQEIFHYFLHSGWASNQALGIYIGMSFFPTAVSKFRNFFL 230
Query: 228 KKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFP 287
KKC DV +YLV+LGPSDDAVKFLFPIFVE+C+ EFPDEIKRF++M++SADLTKPHTWFP
Sbjct: 231 KKCSTDVVKYLVFLGPSDDAVKFLFPIFVEYCLVEFPDEIKRFQSMVKSADLTKPHTWFP 290
Query: 288 FARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSL 347
FAR MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA GVYCSL
Sbjct: 291 FARAMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAHGVYCSL 350
Query: 348 LTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEI 407
LTGQEKKL+PFS+HIACTVEMVST+++Y++AVIDEIQMMSD CRGYAWTRALLGL ADEI
Sbjct: 351 LTGQEKKLLPFSSHIACTVEMVSTEDLYEIAVIDEIQMMSDPCRGYAWTRALLGLKADEI 410
Query: 408 HLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
HLCGDPSVL+VVRKICSETGDELHEQHYERFKPLVVEAKTLLGD +NVRSGDC+VAFSRR
Sbjct: 411 HLCGDPSVLNVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDFKNVRSGDCIVAFSRR 470
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
EIFEVK+AIEK T H CCVIYG+LPPETRR QA+LFNDQDNEFDVLVASDAVGMGLNLNI
Sbjct: 471 EIFEVKLAIEKFTKHRCCVIYGSLPPETRRHQASLFNDQDNEFDVLVASDAVGMGLNLNI 530
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
RVVFY+L+K+NGDKI+PVP SQVKQIAGRAGRRGS YPDGLTTT LDDLDYLIECLKQ
Sbjct: 531 GRVVFYNLAKFNGDKIVPVPASQVKQIAGRAGRRGSRYPDGLTTTFCLDDLDYLIECLKQ 590
Query: 588 PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANM 647
PF+ VKK+GLFP FEQVELFAGQ+S F +LL+KF ENCRLDGSYFLCRHD+IKKVANM
Sbjct: 591 PFDEVKKIGLFPSFEQVELFAGQISKVAFAELLQKFSENCRLDGSYFLCRHDNIKKVANM 650
Query: 648 LEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAE 707
LEKV GLSLEDR+NFCFAPVN+RDPKAMYHLLRFASSYS N PVSIAMGMPKGSA++D+E
Sbjct: 651 LEKVSGLSLEDRYNFCFAPVNVRDPKAMYHLLRFASSYSHNVPVSIAMGMPKGSARSDSE 710
Query: 708 LLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAG 767
LLDLE+KHQVLSMYLWLS FKEE FPY KK E MATDIA+LLGQSLT ANWKPESRQAG
Sbjct: 711 LLDLESKHQVLSMYLWLSQHFKEETFPYVKKVEVMATDIAKLLGQSLTKANWKPESRQAG 770
Query: 768 KPK 770
KPK
Sbjct: 771 KPK 773
>gi|449441634|ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 777
Score = 1098 bits (2840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/756 (71%), Positives = 619/756 (81%), Gaps = 23/756 (3%)
Query: 28 NQCFHSVGRCDKW-VLEKNQFGLTFDGRKREFSASLIDTVRFHLPSGNTRF---IELKAR 83
N+ HSVG+ D +L+ N R FS + ++ V F L S +RF R
Sbjct: 10 NRLLHSVGQYDDHKILQSNPV--------RPFSTT-VNQVWFRLLSQRSRFGVFSSFNLR 60
Query: 84 SFCSSVGNEG--LVNNGTATKPKVEDVEQESGVNFVQGGEEDKVEV------LDDYFDGS 135
VG E NG ++ VE ++ V E D + V + D GS
Sbjct: 61 RISIPVGPEADNKDGNGVSSSNVVEVGGYDADVGKNVCFENDSMMVTGEDGCIGDSICGS 120
Query: 136 VISDSTMVESVHKNSNQSVRFLHLSTRDPVEVFGELRSTEKG-AKINRSDFEVLREVFRF 194
++ DS +S ++S + + + DPVE++ ELRS E G +K+ S++ +L+E+F +
Sbjct: 121 IVDDSKNGDSDLRSSKLR-NYETIKSCDPVELYSELRSVEMGGSKVELSNWLILQEIFHY 179
Query: 195 FSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPI 254
F +SGWA+NQAL +YIG SFFPTA KFR++F+KKC DV +YLV+LGPSDDAVKFLFPI
Sbjct: 180 FLHSGWASNQALGIYIGMSFFPTAVSKFRNFFLKKCSTDVVKYLVFLGPSDDAVKFLFPI 239
Query: 255 FVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQR 314
FVE+C+ EFPDEIKRF++M++SADLTKPHTWFPFAR MKRKIIYHCGPTNSGKTYNALQR
Sbjct: 240 FVEYCLVEFPDEIKRFQSMVKSADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQR 299
Query: 315 FMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM 374
FMEAKKGIYCSPLRLLAMEVFDKVNA GVYCSLLTGQEKKL+PFS+HIACTVEMVST+++
Sbjct: 300 FMEAKKGIYCSPLRLLAMEVFDKVNAHGVYCSLLTGQEKKLLPFSSHIACTVEMVSTEDL 359
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH 434
Y++AVIDEIQMMSD CRGYAWTRALLGL ADEIHLCGDPSVL+VVRKICSETGDELHEQH
Sbjct: 360 YEIAVIDEIQMMSDPCRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELHEQH 419
Query: 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPE 494
YERFKPLVVEAKTLLGD +NVRSGDC+VAFSRREIFEVK+AIEK T H CCVIYG+LPPE
Sbjct: 420 YERFKPLVVEAKTLLGDFKNVRSGDCIVAFSRREIFEVKLAIEKFTKHRCCVIYGSLPPE 479
Query: 495 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQI 554
TRR QA+LFNDQDNEFDVLVASDAVGMGLNLNI RVVFY+L+K+NGDKI+PVP SQVKQI
Sbjct: 480 TRRHQASLFNDQDNEFDVLVASDAVGMGLNLNIGRVVFYNLAKFNGDKIVPVPASQVKQI 539
Query: 555 AGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY 614
AGRAGRRGS YPDGLTTT LDDLDYLIECLKQPF+ VKK+GLFP FEQVELFAGQ+S
Sbjct: 540 AGRAGRRGSRYPDGLTTTFCLDDLDYLIECLKQPFDEVKKIGLFPSFEQVELFAGQISKV 599
Query: 615 TFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKA 674
F +LL+KF ENCRLDGSYFLCRHD+IKKVANMLEKV GLSLEDR+NFCFAPVN+RDPKA
Sbjct: 600 AFAELLQKFSENCRLDGSYFLCRHDNIKKVANMLEKVSGLSLEDRYNFCFAPVNVRDPKA 659
Query: 675 MYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
MYHLLRFASSYS N PVSIAMGMPKGSA++D+ELLDLE+KHQVLSMYLWLS FKEE FP
Sbjct: 660 MYHLLRFASSYSHNVPVSIAMGMPKGSARSDSELLDLESKHQVLSMYLWLSQHFKEETFP 719
Query: 735 YAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPK 770
Y KK E MATDIA+LLGQSLT ANWKPESRQAGKPK
Sbjct: 720 YVKKVEVMATDIAKLLGQSLTKANWKPESRQAGKPK 755
>gi|297805736|ref|XP_002870752.1| hypothetical protein ARALYDRAFT_356016 [Arabidopsis lyrata subsp.
lyrata]
gi|297316588|gb|EFH47011.1| hypothetical protein ARALYDRAFT_356016 [Arabidopsis lyrata subsp.
lyrata]
Length = 777
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/798 (66%), Positives = 645/798 (80%), Gaps = 27/798 (3%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKWVLEKNQFGLTFDGRKREFSA 60
MARG A +L R Y S RV L S + HS + L + F D F +
Sbjct: 1 MARGVAGVLRRAYSS-----RVRVLLSTRNLHSFRETESRSLCNSDF----DVPTNRFCS 51
Query: 61 SLIDTVRFHLPSGNTRF--IEL-KARSFCSSVGNEGLVNNGTATKPKVEDVEQESGVNFV 117
+ VR LP + RF E+ K R+F S+V N G + +DVE+ +G
Sbjct: 52 C--NRVRIQLPWNDYRFGCFEIGKVRTFSSTVDNNG----------ENDDVEESAGSESD 99
Query: 118 QGGEEDKVEVLDDYFDGSVISDSTMVESVHKNSNQSVRFLHLSTRDPVEVFGELRSTEKG 177
EE + L D D S+++DS + ++ S ++ R L+ DPVE++ ELR +E
Sbjct: 100 DYDEEGVINELGD-VDESLLNDSVVAKTDEIGS-EAARALNARYNDPVELYRELRESEVR 157
Query: 178 AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQY 237
+KI RS+++ L E+F +F+ SGWAANQALA+YIGKSFFPTA KFR +F++KC +V Q
Sbjct: 158 SKIQRSEWDSLHEIFGYFAQSGWAANQALAIYIGKSFFPTAVSKFRDFFLEKCRIEVVQD 217
Query: 238 LVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKII 297
L+ +GP+D+AVKFLFP+FVEFCIEEFPDEIKRF++++++ADLTKP TWFPFAR MKRKI+
Sbjct: 218 LLRVGPTDEAVKFLFPVFVEFCIEEFPDEIKRFQSIVDTADLTKPATWFPFARAMKRKIV 277
Query: 298 YHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357
YHCGPTNSGKTYNALQRFMEAK G+YCSPLRLLAMEVFDKVNALG+YCSLLTGQEKK VP
Sbjct: 278 YHCGPTNSGKTYNALQRFMEAKNGLYCSPLRLLAMEVFDKVNALGIYCSLLTGQEKKHVP 337
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLD 417
F+NH++CTVEMVSTDE+Y+VAVIDEIQMM+D RG+AWT+ALLGL ADEIHLCGDPSVLD
Sbjct: 338 FANHVSCTVEMVSTDELYEVAVIDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLD 397
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
+VRK+C++TGDEL E+HYERFKPLVVEAKTLLGDL+NV+SGDCVVAFSRREIFEVKMAIE
Sbjct: 398 IVRKMCADTGDELVEEHYERFKPLVVEAKTLLGDLKNVKSGDCVVAFSRREIFEVKMAIE 457
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
KHTNH CCVIYGALPPETRRQQANLFNDQ+NE+DVLVASDAVGMGLNLNIRRVVFYSL+K
Sbjct: 458 KHTNHRCCVIYGALPPETRRQQANLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNK 517
Query: 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597
YNGDKI+PV SQVKQIAGRAGRRGS YPDGLTTTL+L+DL+YLIECL+QPF+ V KVGL
Sbjct: 518 YNGDKIVPVAASQVKQIAGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGL 577
Query: 598 FPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
FPFFEQ+ELFA Q+ + F +LL+ FG++CRLDGSYFLCRHDH+KKVANMLEKVQGLSLE
Sbjct: 578 FPFFEQIELFAAQVPDMAFSKLLDHFGKHCRLDGSYFLCRHDHVKKVANMLEKVQGLSLE 637
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQV 717
DRFNFCFAPVNIR+PKAMY L RFAS+YS++ PV+IAMG+PK SAKND ELLDLE++HQ+
Sbjct: 638 DRFNFCFAPVNIRNPKAMYQLYRFASTYSQDTPVNIAMGVPKSSAKNDTELLDLESRHQI 697
Query: 718 LSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQRED 777
LSMYLWLS+QF+E+ FP+ ++ EAMAT++AELLG+SL+ A+WK ES++ K K ++ +
Sbjct: 698 LSMYLWLSNQFEEKNFPFVERVEAMATNVAELLGESLSKASWKMESKEE-KVKGQKKEDR 756
Query: 778 GYDRPRSIIKSYENRKRQ 795
GY+RP S+IK RK +
Sbjct: 757 GYERPASLIKLVNKRKEE 774
>gi|356550962|ref|XP_003543849.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 805
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/736 (70%), Positives = 604/736 (82%), Gaps = 33/736 (4%)
Query: 87 SSVGNEGLVNNGTATKPKVEDVEQESGVNFVQGGEEDKVEVLDDYFDGSV-ISDST---- 141
S+ GNEG + K + + +N V G E V D+ D ++ I DS
Sbjct: 70 SAAGNEGGATETPEGEFKTDFELGDEVINSVHGFSEHGVVANDESNDCNLEIVDSAECSS 129
Query: 142 -----------MVESVHKNSNQSVRFLHLSTRDPVEVFGELRSTEKGAKINRSDFEVLRE 190
++ ++ +S F+H+++RDPVE++ E+ S E+G +++ ++ EVL E
Sbjct: 130 SSNNGGGGGGGGSDTNNELGKKSEEFMHVASRDPVELYREMCSVERGPRLDSTEVEVLLE 189
Query: 191 VFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKF 250
V +F+ SGWA+NQALA+YIG SFFPTAA KFR+ F+KKCP DVA+YLV+LGPSD+AV+F
Sbjct: 190 VCHWFAKSGWASNQALAIYIGLSFFPTAAHKFRN-FLKKCPADVAKYLVYLGPSDEAVRF 248
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
LFPIFVEFC+E FPDEIKRFR M+E+ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN
Sbjct: 249 LFPIFVEFCLENFPDEIKRFRGMVEAADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 308
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
ALQRFMEAK GIYCSPLRLLAMEVFDKVNA G+YCSLLTGQEKK VPFSNH+ACTVEM S
Sbjct: 309 ALQRFMEAKTGIYCSPLRLLAMEVFDKVNAKGIYCSLLTGQEKKRVPFSNHVACTVEMAS 368
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
T E+Y+VAVIDEIQMM+D+ RGYAWTRALLGL ADEIHLCGDPSVLD+VRKIC + GDEL
Sbjct: 369 TQELYEVAVIDEIQMMADSNRGYAWTRALLGLTADEIHLCGDPSVLDIVRKICQDMGDEL 428
Query: 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490
EQHYERFKPLVVEAKTLLG+L N+RSGDCVVAFSRREIFEVK+AIEK T H CCVIYGA
Sbjct: 429 CEQHYERFKPLVVEAKTLLGNLENIRSGDCVVAFSRREIFEVKLAIEKQTKHRCCVIYGA 488
Query: 491 LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQ 550
LPPETRRQQA+LFNDQ NE+DVLVASDAVGMGLNLNIRRV+F SL+KYNGDK++PVP SQ
Sbjct: 489 LPPETRRQQASLFNDQSNEYDVLVASDAVGMGLNLNIRRVIFNSLTKYNGDKMVPVPASQ 548
Query: 551 VKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQ 610
VKQIAGRAGRRG +YPDGL TTL+LDDLDYLIECLKQPF+ VKKVGLFP +EQVELF+GQ
Sbjct: 549 VKQIAGRAGRRGCLYPDGLATTLHLDDLDYLIECLKQPFDDVKKVGLFPSYEQVELFSGQ 608
Query: 611 LSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
L + TF Q+LEKFGENCRLDGSYFLC+H+HIKK+ANMLEKVQGLSLEDRFNFCFAPVN+R
Sbjct: 609 LPDLTFTQILEKFGENCRLDGSYFLCQHNHIKKIANMLEKVQGLSLEDRFNFCFAPVNVR 668
Query: 671 DPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
DPKAMYHLLR+A+S+ + PV++AMGMP+ SA+NDAELLDLET+HQVLSMYLWLS+ F E
Sbjct: 669 DPKAMYHLLRYATSFGQKLPVNVAMGMPRSSARNDAELLDLETRHQVLSMYLWLSNHFDE 728
Query: 731 EVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLH----------------QQ 774
E FPY KK EAMA+ IA+LLGQSL ANWKPESR G+PK ++
Sbjct: 729 ETFPYVKKVEAMASCIADLLGQSLVKANWKPESRIKGRPKTEKSEGQLETRSAVELQTEK 788
Query: 775 REDGYDRPRSIIKSYE 790
E GY R RS++K YE
Sbjct: 789 TEMGYSRTRSLLKLYE 804
>gi|15242497|ref|NP_198800.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|332007099|gb|AED94482.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 776
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/799 (66%), Positives = 640/799 (80%), Gaps = 28/799 (3%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKWVLEKNQFGLTFDGRKREFSA 60
MARG A +L R Y S RV L S + HS + L + F D F +
Sbjct: 1 MARGVAGVLRRAYSS-----RVTVLFSTRNLHSFRESESRSLCNSDF----DVPTNRFCS 51
Query: 61 SLIDTVRFHLPSGNTRF--IEL-KARSFCSSVGNEGLVNNGTATKPKVEDVEQESGVNFV 117
+ VR P + RF E+ K RSF S+V N G + +D+E+ G
Sbjct: 52 G--NRVRIQFPWNDYRFGCFEIGKVRSFSSTVDNNG----------ENDDIEESVGSESD 99
Query: 118 QGGEEDKVEVLDDYFDGSVISDSTMVESVHKNSNQSVRFLHLSTRDPVEVFGELRSTEKG 177
EE + L D D +++DS + E+ S ++ R L+ DPVE++ ELR +E
Sbjct: 100 DYDEEGLINELSD-VDEGLLNDSVVAETDEIGS-EAARALNDRYHDPVELYRELRGSEVR 157
Query: 178 AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQY 237
+K+ S+++ L E+F FF+ SGWAANQALA+YIGKSFFPTA KFR +FI+KC +V Q
Sbjct: 158 SKLQHSEWDSLHEIFGFFAQSGWAANQALAIYIGKSFFPTAVSKFRDFFIEKCGIEVVQD 217
Query: 238 LVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKII 297
LV +GP+D AVKFLFP+FVEFCIEEFPDEIKRF++++++ADLTKP TWFPFAR MKRKI+
Sbjct: 218 LVRVGPTDVAVKFLFPVFVEFCIEEFPDEIKRFKSIVDTADLTKPATWFPFARAMKRKIV 277
Query: 298 YHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357
YHCGPTNSGKTYNALQRFMEAK G+YCSPLRLLAMEVFDKVNALG+YCSLLTGQEKK VP
Sbjct: 278 YHCGPTNSGKTYNALQRFMEAKNGLYCSPLRLLAMEVFDKVNALGIYCSLLTGQEKKYVP 337
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLD 417
F+NH++CTVEMVSTDE+Y+VAV+DEIQMM+D RG+AWT+ALLGL ADEIHLCGDPSVLD
Sbjct: 338 FANHVSCTVEMVSTDELYEVAVLDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLD 397
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
+VRK+C++TGDEL E+HYERFKPLVVEAKTLLG+L+NV+SGDCVVAFSRREIFEVKMAIE
Sbjct: 398 IVRKMCADTGDELVEEHYERFKPLVVEAKTLLGELKNVKSGDCVVAFSRREIFEVKMAIE 457
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
KHTNH CCVIYGALPPETRRQQA LFNDQ+NE+DVLVASDAVGMGLNLNIRRVVFYSL+K
Sbjct: 458 KHTNHRCCVIYGALPPETRRQQAKLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNK 517
Query: 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597
YNGDKI+PV SQVKQIAGRAGRRGS YPDGLTTTL+L+DL+YLIECL+QPF+ V KVGL
Sbjct: 518 YNGDKIVPVAASQVKQIAGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGL 577
Query: 598 FPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
FPFFEQ+ELFA Q+ + F LLE FG++CRLDGSYFLCRHDH+KKVANMLEKV+GLSLE
Sbjct: 578 FPFFEQIELFAAQVPDMAFSNLLEHFGKHCRLDGSYFLCRHDHVKKVANMLEKVEGLSLE 637
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQV 717
DRFNFCFAPVNIR+P+AM++L RFASSYS+N PV++AMG+PK SAK+DA+LLDLE++HQ+
Sbjct: 638 DRFNFCFAPVNIRNPRAMHNLYRFASSYSQNMPVNVAMGIPKSSAKSDAQLLDLESRHQI 697
Query: 718 LSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQRED 777
LSMYLWLS+QF EE FP+ +K EAMAT+IAELLG+SL+ A+WK ES++ K K + +
Sbjct: 698 LSMYLWLSNQF-EENFPFVEKVEAMATNIAELLGESLSKASWKMESKEE-KVKGQMKEDR 755
Query: 778 GYDRPRSIIKSYENRKRQE 796
GY+RP S+IK + RK ++
Sbjct: 756 GYERPASLIKLVKKRKDEK 774
>gi|10176976|dbj|BAB10208.1| mitochondrial RNA helicase-like protein [Arabidopsis thaliana]
Length = 769
Score = 1067 bits (2760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/790 (66%), Positives = 635/790 (80%), Gaps = 28/790 (3%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKWVLEKNQFGLTFDGRKREFSA 60
MARG A +L R Y S RV L S + HS + L + F D F +
Sbjct: 1 MARGVAGVLRRAYSS-----RVTVLFSTRNLHSFRESESRSLCNSDF----DVPTNRFCS 51
Query: 61 SLIDTVRFHLPSGNTRF--IEL-KARSFCSSVGNEGLVNNGTATKPKVEDVEQESGVNFV 117
+ VR P + RF E+ K RSF S+V N G + +D+E+ G
Sbjct: 52 G--NRVRIQFPWNDYRFGCFEIGKVRSFSSTVDNNG----------ENDDIEESVGSESD 99
Query: 118 QGGEEDKVEVLDDYFDGSVISDSTMVESVHKNSNQSVRFLHLSTRDPVEVFGELRSTEKG 177
EE + L D D +++DS + E+ S ++ R L+ DPVE++ ELR +E
Sbjct: 100 DYDEEGLINELSD-VDEGLLNDSVVAETDEIGS-EAARALNDRYHDPVELYRELRGSEVR 157
Query: 178 AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQY 237
+K+ S+++ L E+F FF+ SGWAANQALA+YIGKSFFPTA KFR +FI+KC +V Q
Sbjct: 158 SKLQHSEWDSLHEIFGFFAQSGWAANQALAIYIGKSFFPTAVSKFRDFFIEKCGIEVVQD 217
Query: 238 LVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKII 297
LV +GP+D AVKFLFP+FVEFCIEEFPDEIKRF++++++ADLTKP TWFPFAR MKRKI+
Sbjct: 218 LVRVGPTDVAVKFLFPVFVEFCIEEFPDEIKRFKSIVDTADLTKPATWFPFARAMKRKIV 277
Query: 298 YHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357
YHCGPTNSGKTYNALQRFMEAK G+YCSPLRLLAMEVFDKVNALG+YCSLLTGQEKK VP
Sbjct: 278 YHCGPTNSGKTYNALQRFMEAKNGLYCSPLRLLAMEVFDKVNALGIYCSLLTGQEKKYVP 337
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLD 417
F+NH++CTVEMVSTDE+Y+VAV+DEIQMM+D RG+AWT+ALLGL ADEIHLCGDPSVLD
Sbjct: 338 FANHVSCTVEMVSTDELYEVAVLDEIQMMADPSRGHAWTKALLGLKADEIHLCGDPSVLD 397
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
+VRK+C++TGDEL E+HYERFKPLVVEAKTLLG+L+NV+SGDCVVAFSRREIFEVKMAIE
Sbjct: 398 IVRKMCADTGDELVEEHYERFKPLVVEAKTLLGELKNVKSGDCVVAFSRREIFEVKMAIE 457
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
KHTNH CCVIYGALPPETRRQQA LFNDQ+NE+DVLVASDAVGMGLNLNIRRVVFYSL+K
Sbjct: 458 KHTNHRCCVIYGALPPETRRQQAKLFNDQENEYDVLVASDAVGMGLNLNIRRVVFYSLNK 517
Query: 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597
YNGDKI+PV SQVKQIAGRAGRRGS YPDGLTTTL+L+DL+YLIECL+QPF+ V KVGL
Sbjct: 518 YNGDKIVPVAASQVKQIAGRAGRRGSRYPDGLTTTLHLEDLNYLIECLQQPFDEVTKVGL 577
Query: 598 FPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
FPFFEQ+ELFA Q+ + F LLE FG++CRLDGSYFLCRHDH+KKVANMLEKV+GLSLE
Sbjct: 578 FPFFEQIELFAAQVPDMAFSNLLEHFGKHCRLDGSYFLCRHDHVKKVANMLEKVEGLSLE 637
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQV 717
DRFNFCFAPVNIR+P+AM++L RFASSYS+N PV++AMG+PK SAK+DA+LLDLE++HQ+
Sbjct: 638 DRFNFCFAPVNIRNPRAMHNLYRFASSYSQNMPVNVAMGIPKSSAKSDAQLLDLESRHQI 697
Query: 718 LSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQRED 777
LSMYLWLS+QF EE FP+ +K EAMAT+IAELLG+SL+ A+WK ES++ K K + +
Sbjct: 698 LSMYLWLSNQF-EENFPFVEKVEAMATNIAELLGESLSKASWKMESKEE-KVKGQMKEDR 755
Query: 778 GYDRPRSIIK 787
GY+RP S+IK
Sbjct: 756 GYERPASLIK 765
>gi|356573474|ref|XP_003554884.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 829
Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/859 (64%), Positives = 648/859 (75%), Gaps = 80/859 (9%)
Query: 1 MARGQATILFRIYRSKNNVSRVGALSSNQCFHSVGRCDKWVLEKNQFGLTFDGRKREFSA 60
MARG LF +Y K +S++ AL N HS QF TF
Sbjct: 1 MARG----LFHLYTRKRTLSKLQALLFNN-HHS------------QFH-TFQN-----PV 37
Query: 61 SLIDTVRFHLPSGNTRFIE---LKARSF-----CSSVGNEGLVNNGTATKPKVEDVEQES 112
S I T RF P RF + L F S+ G++G GT P+ E V +S
Sbjct: 38 SPIST-RFSNPLLRPRFSQSSRLSGERFRPTRPFSAAGDDG----GTTEAPEGEFV-ADS 91
Query: 113 G-----------VNFVQGGEEDKVEVLDDYFDGSV-ISDST---------MVESVHKNSN 151
G VN V G E V DD + ++ I DS N+N
Sbjct: 92 GKGIDFELGKEVVNSVHGFPEHGVVANDDSNECNLEIDDSVECSTSSSGGEGGGGSDNNN 151
Query: 152 Q----SVRFLHLSTRDPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALA 207
+ + F+H+++R PVE++ E+ E G +++R++ EVL EV +F+ SGWA+NQALA
Sbjct: 152 ELGKKNEEFMHVASRGPVELYREMCRVEWGPRLDRTEVEVLLEVCHWFAKSGWASNQALA 211
Query: 208 VYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEI 267
+YIG SFFPTAA KF + KKCP DVA+YLV+LGPSD+A++FLFPIFVEFC+E FPDEI
Sbjct: 212 IYIGMSFFPTAAHKFHKFLKKKCPTDVAKYLVYLGPSDEAMRFLFPIFVEFCLENFPDEI 271
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
KRFR+M+ESADLTKPHTWFPFAR MKRKIIYHCGPTNSGKTYNALQRFMEAK GIYCSPL
Sbjct: 272 KRFRSMVESADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMEAKSGIYCSPL 331
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMS 387
RLLAMEVFDKVNA G+YCSLLTGQEKK VPFSNH+ACTVEM S E+Y+VAVIDEIQMM+
Sbjct: 332 RLLAMEVFDKVNAKGIYCSLLTGQEKKRVPFSNHVACTVEMASAQELYEVAVIDEIQMMA 391
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
D+ RGYAWTRALLGL ADEIHLCGDPSVLD+VRKIC +TGDEL EQHYERFKPLVVEAKT
Sbjct: 392 DSNRGYAWTRALLGLKADEIHLCGDPSVLDIVRKICQDTGDELCEQHYERFKPLVVEAKT 451
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
LLG+ N+RSGDCVVAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA+LFNDQ
Sbjct: 452 LLGNFENIRSGDCVVAFSRREIFEVKLAIEKQTKHRCCVIYGALPPETRRQQASLFNDQS 511
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD 567
NE+DVLVASDAVGMGLNLNIRRV+F SL+KYNGDK++P+P SQVKQIAGRAGRRG +YPD
Sbjct: 512 NEYDVLVASDAVGMGLNLNIRRVIFNSLAKYNGDKMVPIPASQVKQIAGRAGRRGCLYPD 571
Query: 568 GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC 627
GL TT++LDDLDYLIECLKQPF+ VKKVGLFPF+EQVELF+GQL + TF Q+LEKFGENC
Sbjct: 572 GLATTMHLDDLDYLIECLKQPFDDVKKVGLFPFYEQVELFSGQLPDLTFPQILEKFGENC 631
Query: 628 RLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
RLDGSYFLC+H+HIKK+ANML KVQGLSL+D FNFCFAPVN+RDPKAMYHLLR+A+S+ +
Sbjct: 632 RLDGSYFLCQHNHIKKIANMLGKVQGLSLKDHFNFCFAPVNVRDPKAMYHLLRYATSFGQ 691
Query: 688 NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIA 747
PV++AMGMP+ SA+NDAELLDLET+HQVLSMYLWLS+ F EE FPY KK EAMA+ IA
Sbjct: 692 KLPVNVAMGMPRSSARNDAELLDLETRHQVLSMYLWLSNHFDEETFPYVKKVEAMASCIA 751
Query: 748 ELLGQSLTNANWKPESRQAGKPKLH-----------------QQREDGYDRPRSIIKSYE 790
+LLGQSL ANWKPESR G+PK ++RE GY R RS++K YE
Sbjct: 752 DLLGQSLVRANWKPESRIKGRPKTEKSEGGQLETRSEVELQTEKREMGYSRLRSLLKLYE 811
Query: 791 NRKRQEKTSLTLHTEKIPA 809
+KR EK+ L H++++ A
Sbjct: 812 -KKRHEKSLLLGHSKEVAA 829
>gi|326319838|emb|CBW45782.1| ORW1943Ba0077G13.10 [Oryza rufipogon]
Length = 734
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/656 (65%), Positives = 523/656 (79%), Gaps = 21/656 (3%)
Query: 163 DPVEVFGELRSTEKG---AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAA 219
D +++ E+ ++E +++ ++ ++ + + R F ++QALA+YI S FPT A
Sbjct: 71 DGKQLWREVSTSEPATGASRLPKATWDAVVALLRRFGKDPAMSDQALALYIPASAFPTYA 130
Query: 220 GKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADL 279
+FR + + + A++L+ L P+DDA L P F EFC+ DE+++ +++ +ADL
Sbjct: 131 RRFRHFLPARLSLESAEHLLSL-PADDAHALLLPAFAEFCVTHLADELRKHESVMAAADL 189
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T PH W+PFAR M+R+++YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAMEVFDKVN
Sbjct: 190 TAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVN 249
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
ALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E Y+VAV+DEIQMM+D RGYAWTRA+
Sbjct: 250 ALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAV 309
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL ADEIHLCGDPSVL +VRKIC++TGD+L YERFKPLVVEAKTLLGDL+NVRSGD
Sbjct: 310 LGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGD 369
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
C+VAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVLVASDAV
Sbjct: 370 CIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAV 429
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMGLNLNIRRVVFYSL+KYNGD+++PV SQVKQIAGRAGRRGSIYPDGLTTT LDDLD
Sbjct: 430 GMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLDDLD 489
Query: 580 YLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHD 639
YLI+CL+QPFE KKVGLFP FEQVE FA Q + TF +LL+KF ENCR+D +YF+C +
Sbjct: 490 YLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQE 549
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPK 699
IKKVANMLE++QGLSL+DR+NFCFAPVNIRDPKAMYHLLRFA++YS++ VSIAMGMPK
Sbjct: 550 SIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPK 609
Query: 700 GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANW 759
GSAKND ELLDLETKHQVLSMYLWLSH F+E+ FP+ +KAE M+ +IA+LL +SL A+W
Sbjct: 610 GSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSLAKASW 669
Query: 760 KPESRQAGKPKLHQQR----------------EDGYDRPRSIIKSYENRKRQEKTS 799
KP SRQ KP+ + EDGY+R S IK + RKR ++ S
Sbjct: 670 KPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPF-MRKRLDRLS 724
>gi|38344959|emb|CAD40979.2| OSJNBa0072F16.4 [Oryza sativa Japonica Group]
gi|116310057|emb|CAH67079.1| OSIGBa0097P08.9 [Oryza sativa Indica Group]
gi|116310442|emb|CAH67447.1| H0219H12.4 [Oryza sativa Indica Group]
Length = 734
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/656 (65%), Positives = 523/656 (79%), Gaps = 21/656 (3%)
Query: 163 DPVEVFGELRSTEKG---AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAA 219
D +++ E+ ++E +++ ++ ++ + + R F ++QALA+YI S FPT A
Sbjct: 71 DGKQLWREVSTSEPATGASRLPKATWDAVVALLRRFGKDPAMSDQALALYIPASAFPTYA 130
Query: 220 GKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADL 279
+FR + + + A++L+ L P+DDA L P F EFC+ DE+++ +++ +ADL
Sbjct: 131 RRFRHFLPARLSLESAEHLLSL-PADDAHALLLPAFAEFCVTHLADELRKHESVMAAADL 189
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T PH W+PFAR M+R+++YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAMEVFDKVN
Sbjct: 190 TAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVN 249
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
ALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E Y+VAV+DEIQMM+D RGYAWTRA+
Sbjct: 250 ALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAV 309
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL ADEIHLCGDPSVL +VRKIC++TGD+L YERFKPLVVEAKTLLGDL+NVRSGD
Sbjct: 310 LGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGD 369
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
C+VAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVLVASDAV
Sbjct: 370 CIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAV 429
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMGLNLNIRRVVFYSL+KYNGD+++PV SQVKQIAGRAGRRGSIYPDGLTTT LDDLD
Sbjct: 430 GMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLDDLD 489
Query: 580 YLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHD 639
YLI+CL+QPFE KKVGLFP FEQVE FA Q + TF +LL+KF ENCR+D +YF+C +
Sbjct: 490 YLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQE 549
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPK 699
IKKVANMLE++QGLSL+DR+NFCFAPVNIRDPKAMYHLLRFA++YS++ VSIAMGMPK
Sbjct: 550 SIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPK 609
Query: 700 GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANW 759
GSAKND ELLDLETKHQVLSMYLWLSH F+E+ FP+ +KAE M+ +IA+LL +SL A+W
Sbjct: 610 GSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSLAKASW 669
Query: 760 KPESRQAGKPKLHQQR----------------EDGYDRPRSIIKSYENRKRQEKTS 799
KP SRQ KP+ + EDGY+R S IK + RKR ++ S
Sbjct: 670 KPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPF-MRKRLDRPS 724
>gi|32492143|emb|CAE03376.1| OSJNBa0036B21.27 [Oryza sativa Japonica Group]
Length = 725
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/655 (65%), Positives = 520/655 (79%), Gaps = 20/655 (3%)
Query: 163 DPVEVFGELRSTEKG---AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAA 219
D +++ E+ ++E +++ ++ ++ + + R F ++QALA+YI S FPT A
Sbjct: 71 DGKQLWREVSTSEPATGASRLPKATWDAVVALLRRFGKDPAMSDQALALYIPASAFPTYA 130
Query: 220 GKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADL 279
+FR + + + A++L+ L P+DDA L P F EFC+ DE+++ +++ +ADL
Sbjct: 131 RRFRHFLPARLSLESAEHLLSL-PADDAHALLLPAFAEFCVTHLADELRKHESVMAAADL 189
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T PH W+PFAR M+R+++YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAMEVFDKVN
Sbjct: 190 TAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVN 249
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
ALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E Y+VAV+DEIQMM+D RGYAWTRA+
Sbjct: 250 ALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAV 309
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL ADEIHLCGDPSVL +VRKIC++TGD+L YERFKPLVVEAKTLLGDL+NVRSGD
Sbjct: 310 LGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGD 369
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
C+VAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVLVASDAV
Sbjct: 370 CIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAV 429
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMGLNLNIRRVVFYSL+KYNGD+++PV SQVKQIAGRAGRRGSIYPDGLTTT LDDLD
Sbjct: 430 GMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLDDLD 489
Query: 580 YLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHD 639
YLI+CL+QPFE KKVGLFP FEQVE FA Q + TF +LL+KF ENCR+D +YF+C +
Sbjct: 490 YLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQE 549
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPK 699
IKKVANMLE++QGLSL+DR+NFCFAPVNIRDPKAMYHLLRFA++YS++ VSIAMGMPK
Sbjct: 550 SIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPK 609
Query: 700 GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANW 759
GSAKND ELLDLETKHQVLSMYLWLSH F+E+ FP+ +KAE M+ +IA+LL +SL A+W
Sbjct: 610 GSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSLAKASW 669
Query: 760 KPESRQAGKPKLHQQR----------------EDGYDRPRSIIKSYENRKRQEKT 798
KP SRQ KP+ + EDGY+R S IK + + EK
Sbjct: 670 KPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPFMRKVVAEKA 724
>gi|326498319|dbj|BAJ98587.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 728
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/652 (64%), Positives = 521/652 (79%), Gaps = 22/652 (3%)
Query: 159 LSTRDPVEVFGELRSTEKG---AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFF 215
L DP +++ EL + E +++ ++ ++ + + R F+ A+Q LA+YI S F
Sbjct: 60 LPPLDPKQLWRELSTAEPATGSSRLPKATWDDVVALTRRFAKDPAIADQVLALYIPSSEF 119
Query: 216 PTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIE 275
PT A FR + ++ + A+ L+ L P +DA L P F E+C+ D++++ ++++
Sbjct: 120 PTYARHFRHFMPERLSQESAERLLSL-PGEDAHALLLPAFAEYCLNYHADKLRQNKSVMA 178
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ADLT PHTW+PFAR M+R+++YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAMEVF
Sbjct: 179 AADLTAPHTWYPFARAMRRRVVYHCGPTNSGKTHNALARFSAAKSGVYCSPLRLLAMEVF 238
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
DKVNALGVYC+L TGQE K VPFSNH+ACT+EM+ST+E+Y+VAV+DEIQMM D+ RGYAW
Sbjct: 239 DKVNALGVYCTLRTGQEVKEVPFSNHVACTIEMLSTEELYEVAVVDEIQMMGDSVRGYAW 298
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
TRA+LG+ ADEIHLCGDPSVL +VRKIC++TGD+L YERFKPLVVEAK+LLGDL+NV
Sbjct: 299 TRAVLGIKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKSLLGDLKNV 358
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
RSGDC+VAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVLVA
Sbjct: 359 RSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVA 418
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575
SDAVGMGLNLNIRRVVFYSLSKYNGD+++PV SQVKQIAGRAGRRGS+YPDGLTTT L
Sbjct: 419 SDAVGMGLNLNIRRVVFYSLSKYNGDRMVPVAASQVKQIAGRAGRRGSVYPDGLTTTFLL 478
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635
DDLDYLI+CL+QPFE +K+GLFP FEQVE+FA Q N TF LL+KF +NCR+D +YF+
Sbjct: 479 DDLDYLIQCLQQPFEEAQKIGLFPCFEQVEMFASQFPNLTFTDLLDKFRDNCRIDKTYFM 538
Query: 636 CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAM 695
C+ D IKKVANMLE+VQGLSL+DR+NFCFAPVNIRDPKAMYHLLRFA+ YS+ VSIAM
Sbjct: 539 CQQDGIKKVANMLERVQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATHYSQIRRVSIAM 598
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLT 755
GMPKGSA+ND ELLDLETKHQVLSMYLWLSH F+E+ FP+ +KAE MAT+IA+LLG+SL
Sbjct: 599 GMPKGSARNDTELLDLETKHQVLSMYLWLSHHFEEDNFPHVQKAEEMATNIADLLGKSLA 658
Query: 756 NANWKPESRQAGKPKLHQQRED------------------GYDRPRSIIKSY 789
A+WKPESRQ K + ++ E GY+R R + K++
Sbjct: 659 KASWKPESRQQTKQRREEKEESDSNAEQVSDDDAKNVSKVGYERTRPLPKTF 710
>gi|357167747|ref|XP_003581313.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Brachypodium distachyon]
Length = 712
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/648 (64%), Positives = 517/648 (79%), Gaps = 22/648 (3%)
Query: 163 DPVEVFGELRSTEKG---AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAA 219
D +++ EL ++E +++ ++ ++ + + R FS A+QALA+YI S FP A
Sbjct: 64 DSKQLWHELSTSEPATSSSRLPKATWDDVVSLIRRFSKDPAIADQALALYIPASAFPAYA 123
Query: 220 GKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADL 279
+F + + + A+ L+ L P++DA L P F E+C+ DE+++ ++++ +ADL
Sbjct: 124 KRFIHFIPPRLSRESAERLLSL-PAEDAHALLLPSFAEYCVTHLADELRKHKSVMSAADL 182
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T P TW+PFAR M+R+++YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAMEVFDKVN
Sbjct: 183 TAPQTWYPFARAMRRRVVYHCGPTNSGKTHNALARFSTAKSGVYCSPLRLLAMEVFDKVN 242
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
ALGVYC+L TGQE K VPFSNH+ACT+EM+ST+E+Y+VAV+DEIQMM+D+ RGYAWTRA+
Sbjct: 243 ALGVYCTLRTGQEIKEVPFSNHVACTIEMLSTEELYEVAVVDEIQMMADSVRGYAWTRAV 302
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL ADEIHLCGDPSVL +VRK+C++TGD+L YERFKPLVVEAKTLLGDL+NVRSGD
Sbjct: 303 LGLKADEIHLCGDPSVLKIVRKVCADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGD 362
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
C+VAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVLVASDAV
Sbjct: 363 CIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAV 422
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMGLNLNIRRVVFYSL+KYNGDK++PV SQVKQIAGRAGRRGS+YPDGLTTT DDLD
Sbjct: 423 GMGLNLNIRRVVFYSLTKYNGDKMVPVAASQVKQIAGRAGRRGSVYPDGLTTTFLSDDLD 482
Query: 580 YLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHD 639
YLI+CL++PFE +KVGLFP FEQVE+FA Q + TF LL KF ENCR+D +YF+C+ D
Sbjct: 483 YLIQCLQKPFEEAQKVGLFPCFEQVEMFASQFPDLTFTDLLNKFRENCRIDNTYFMCQQD 542
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPK 699
IKKVANMLE+VQGLSL+DR+NFCFAPVN RDPKAMYHLLRFA+ YS++ +IAMGMPK
Sbjct: 543 SIKKVANMLERVQGLSLKDRYNFCFAPVNTRDPKAMYHLLRFATHYSQSRRATIAMGMPK 602
Query: 700 GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANW 759
GSAKND ELLDLETKHQVLSMYLWLSH F+E+ FP+ +KAE MA +IA+LLG+SL W
Sbjct: 603 GSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMAVNIADLLGKSLAKVCW 662
Query: 760 KPESRQAGKPKLHQQRE------------------DGYDRPRSIIKSY 789
KPESRQ K + ++ E DGY+RPRS+ K++
Sbjct: 663 KPESRQQRKQRPEEKEENDSNVGHASDDDANNVSKDGYERPRSLSKTF 710
>gi|226500860|ref|NP_001151526.1| ATP-dependent RNA helicase SUV3 [Zea mays]
gi|195647420|gb|ACG43178.1| ATP-dependent RNA helicase SUV3 [Zea mays]
Length = 727
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/659 (63%), Positives = 533/659 (80%), Gaps = 22/659 (3%)
Query: 160 STRDPVEVFGELRSTEKGA---KINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFP 216
S+ DP +++ EL +++ ++ ++ ++ + + R F+ S ++QALA+Y+ S FP
Sbjct: 61 SSLDPKKLWRELSASDPAVGSCRLPKATWDAIVGLVRGFAKSPAISDQALALYVPSSAFP 120
Query: 217 TAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIES 276
+ +FR + + + + A +L+ L P++DA + L P F EFC F D++++ R+++ +
Sbjct: 121 SYVRRFRGFILPRLSRESAAHLLSL-PAEDAHELLLPAFAEFCFSNFADKLRQHRSVMAA 179
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADLT PHTW+PFAR M+R+I+YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAME+FD
Sbjct: 180 ADLTAPHTWYPFARAMRRRIVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEIFD 239
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
KVNALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E+Y+VAV+DEIQMM+D RG+AW+
Sbjct: 240 KVNALGVYCSLRTGQEVKEVPFSNHVACTIEMMSTEELYEVAVVDEIQMMADPVRGFAWS 299
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RA+LGL ADEIHLCGDPSVL +V+KIC++TGD+L YERFKPLVVEAKTLLGDL+N+R
Sbjct: 300 RAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQYERFKPLVVEAKTLLGDLKNIR 359
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
SGDCVVAFSR+EIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVL+AS
Sbjct: 360 SGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLIAS 419
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DAVGMGLNLNIRRVVFYSL+KYNG++++PVP SQVKQIAGRAGRRGS+YPDGLTTT D
Sbjct: 420 DAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQIAGRAGRRGSVYPDGLTTTFLKD 479
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DLDYLI+CL+QPFE +K G+FP FEQVE+FA Q N +F LL+KF ++CR+D +YF+C
Sbjct: 480 DLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNLSFNDLLDKFRDSCRIDKTYFMC 539
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ D IKKVANMLE+VQGL L+DR+NFCFAPVNIRDPKAMYHLLRFA++YS + V IAMG
Sbjct: 540 QQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSHSRRVGIAMG 599
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
+P+GSAKNDAELLDLETKHQVLSMYLWLSH F+E+ FP+ ++AE MA +IA+LLG+SL
Sbjct: 600 IPRGSAKNDAELLDLETKHQVLSMYLWLSHHFEEDNFPHVQQAENMAINIADLLGKSLAK 659
Query: 757 ANWKPESRQA------GKPKLHQQR----------EDGYDRPRSIIKSYENRKRQEKTS 799
A WKPESRQ GK + ++++ +GY+RPR++ K+ RK Q+K S
Sbjct: 660 ACWKPESRQQVRGRREGKDEYNEEQASNESANDVPTNGYERPRALDKTL--RKWQDKVS 716
>gi|115458774|ref|NP_001052987.1| Os04g0459800 [Oryza sativa Japonica Group]
gi|113564558|dbj|BAF14901.1| Os04g0459800 [Oryza sativa Japonica Group]
Length = 609
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/577 (70%), Positives = 479/577 (83%), Gaps = 17/577 (2%)
Query: 239 VWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIY 298
+ L P+DDA L P F EFC+ DE+++ +++ +ADLT PH W+PFAR M+R+++Y
Sbjct: 24 ILLLPADDAHALLLPAFAEFCVTHLADELRKHESVMAAADLTAPHAWYPFARAMRRRVVY 83
Query: 299 HCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF 358
HCGPTNSGKT+NAL RF AK G+YCSPLRLLAMEVFDKVNALGVYCSL TGQE K VPF
Sbjct: 84 HCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVNALGVYCSLRTGQEIKEVPF 143
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDV 418
SNH+ACT+EM+ST+E Y+VAV+DEIQMM+D RGYAWTRA+LGL ADEIHLCGDPSVL +
Sbjct: 144 SNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKI 203
Query: 419 VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK 478
VRKIC++TGD+L YERFKPLVVEAKTLLGDL+NVRSGDC+VAFSRREIFEVK+AIEK
Sbjct: 204 VRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEK 263
Query: 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
T H CCVIYGALPPETRRQQA LFN+QDNE+DVLVASDAVGMGLNLNIRRVVFYSL+KY
Sbjct: 264 FTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKY 323
Query: 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
NGD+++PV SQVKQIAGRAGRRGSIYPDGLTTT LDDLDYLI+CL+QPFE KKVGLF
Sbjct: 324 NGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLF 383
Query: 599 PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLED 658
P FEQVE FA Q + TF +LL+KF ENCR+D +YF+C + IKKVANMLE++QGLSL+D
Sbjct: 384 PCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQESIKKVANMLERIQGLSLKD 443
Query: 659 RFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVL 718
R+NFCFAPVNIRDPKAMYHLLRFA++YS++ VSIAMGMPKGSAKND ELLDLETKHQVL
Sbjct: 444 RYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPKGSAKNDTELLDLETKHQVL 503
Query: 719 SMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQR--- 775
SMYLWLSH F+E+ FP+ +KAE M+ +IA+LL +SL A+WKP SRQ KP+ +
Sbjct: 504 SMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSLAKASWKPTSRQQAKPRRENEEDND 563
Query: 776 -------------EDGYDRPRSIIKSYENRKRQEKTS 799
EDGY+R S IK + RKR ++ S
Sbjct: 564 VEQASDDNAKNDSEDGYERSISRIKPF-MRKRLDRPS 599
>gi|222628992|gb|EEE61124.1| hypothetical protein OsJ_15051 [Oryza sativa Japonica Group]
Length = 700
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/656 (63%), Positives = 502/656 (76%), Gaps = 55/656 (8%)
Query: 163 DPVEVFGELRSTEKG---AKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAA 219
D +++ E+ ++E +++ ++ ++ + + R F ++QALA+YI S FPT A
Sbjct: 71 DGKQLWREVSTSEPATGASRLPKATWDAVVALLRRFGKDPAMSDQALALYIPASAFPTYA 130
Query: 220 GKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADL 279
+FR + + +++ +++ +ADL
Sbjct: 131 RRFRHFLPARL-----------------------------------SLEKHESVMAAADL 155
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T PH W+PFAR M+R+++YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAMEVFDKVN
Sbjct: 156 TAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFDKVN 215
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
ALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E Y+VAV+DEIQMM+D RGYAWTRA+
Sbjct: 216 ALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWTRAV 275
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL ADEIHLCGDPSVL +VRKIC++TGD+L YERFKPLVVEAKTLLGDL+NVRSGD
Sbjct: 276 LGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRSGD 335
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
C+VAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVLVASDAV
Sbjct: 336 CIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASDAV 395
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMGLNLNIRRVVFYSL+KYNGD+++PV SQVKQIAGRAGRRGSIYPDGLTTT LDDLD
Sbjct: 396 GMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLDDLD 455
Query: 580 YLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHD 639
YLI+CL+QPFE KKVGLFP FEQVE FA Q + TF +LL+KF ENCR+D +YF+C +
Sbjct: 456 YLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMCHQE 515
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPK 699
IKKVANMLE++QGLSL+DR+NFCFAPVNIRDPKAMYHLLRFA++YS++ VSIAMGMPK
Sbjct: 516 SIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSIAMGMPK 575
Query: 700 GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANW 759
GSAKND ELLDLETKHQVLSMYLWLSH F+E+ FP+ +KAE M+ +IA+LL +SL A+W
Sbjct: 576 GSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSLAKASW 635
Query: 760 KPESRQAGKPKLHQQR----------------EDGYDRPRSIIKSYENRKRQEKTS 799
KP SRQ KP+ + EDGY+R S IK + RKR ++ S
Sbjct: 636 KPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPF-MRKRLDRPS 690
>gi|223974755|gb|ACN31565.1| unknown [Zea mays]
Length = 551
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/542 (71%), Positives = 463/542 (85%), Gaps = 18/542 (3%)
Query: 274 IESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAME 333
+ +ADLT PHTW+PFAR M+R+I+YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAME
Sbjct: 1 MAAADLTAPHTWYPFARAMRRRIVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAME 60
Query: 334 VFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
+FDKVNALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E+Y+VAV+DEIQMM+D RG+
Sbjct: 61 IFDKVNALGVYCSLRTGQEVKEVPFSNHVACTIEMMSTEELYEVAVVDEIQMMADPVRGF 120
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AW+RA+LGL ADEIHLCGDPSVL +V+KIC++TGD+L YERFKPLVVEAKTLLGDL+
Sbjct: 121 AWSRAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQYERFKPLVVEAKTLLGDLK 180
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
N+RSGDCVVAFSR+EIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVL
Sbjct: 181 NIRSGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVL 240
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
+ASDAVGMGLNLNIRRVVFYSL+KYNG++++PVP SQVKQIAGRAGRRGS+YPDGLTTT
Sbjct: 241 IASDAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQIAGRAGRRGSVYPDGLTTTF 300
Query: 574 NLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSY 633
DDLDYLI+CL+QPFE +K G+FP FEQVE+FA Q N +F LL+KF ++CR+D +Y
Sbjct: 301 LKDDLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNLSFNDLLDKFRDSCRIDKTY 360
Query: 634 FLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI 693
F+C+ D IKKVANMLE+VQGL L+DR+NFCFAPVNIRDPKAMYHLLRFA++YS + V I
Sbjct: 361 FMCQQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSHSRRVGI 420
Query: 694 AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
AMG+P+GSAKNDAELLDLETKHQVLSMYLWLSH F+E+ FP+ ++AE MA +IA+LLG+S
Sbjct: 421 AMGIPRGSAKNDAELLDLETKHQVLSMYLWLSHHFEEDNFPHVQQAENMAINIADLLGKS 480
Query: 754 LTNANWKPESRQA------GKPKLHQQR----------EDGYDRPRSIIKSYENRKRQEK 797
L A WKPESRQ GK + ++++ +GY+RPR++ K+ RK Q+K
Sbjct: 481 LAKACWKPESRQQVRGRREGKDEYNEEQASNESANDVPTNGYERPRALDKTL--RKWQDK 538
Query: 798 TS 799
S
Sbjct: 539 VS 540
>gi|414586894|tpg|DAA37465.1| TPA: ATP-dependent RNA helicase SUV3 [Zea mays]
Length = 627
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/564 (66%), Positives = 471/564 (83%), Gaps = 4/564 (0%)
Query: 160 STRDPVEVFGELRSTEKGA---KINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFP 216
S+ DP +++ EL +++ ++ ++ ++ + + R F+ S ++QALA+Y+ S FP
Sbjct: 61 SSLDPKKLWRELSASDPAVGSCRLPKATWDAIVGLVRGFAKSPAISDQALALYVPSSAFP 120
Query: 217 TAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIES 276
+ +FR++ + + + A +L+ L P++DA + L P F EFC F D++++ R+++ +
Sbjct: 121 SYVRRFRAFILPRLSRESAAHLLSL-PAEDAHELLLPAFAEFCFSNFADKLRQHRSVMAA 179
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADLT PHTW+PFAR M+R+I+YHCGPTNSGKT+NAL RF AK G+YCSPLRLLAME+FD
Sbjct: 180 ADLTAPHTWYPFARAMRRRIVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEIFD 239
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
KVNALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E+Y+VAV+DEIQMM+D RG+AW+
Sbjct: 240 KVNALGVYCSLRTGQEVKEVPFSNHVACTIEMMSTEELYEVAVVDEIQMMADPVRGFAWS 299
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RA+LGL ADEIHLCGDPSVL +V+KIC++TGD+L YERFKPLVVEAKTLLGDL+N+R
Sbjct: 300 RAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQYERFKPLVVEAKTLLGDLKNIR 359
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
SGDCVVAFSR+EIFEVK+AIEK T H CCVIYGALPPETRRQQA LFN+QDNE+DVL+AS
Sbjct: 360 SGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLIAS 419
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DAVGMGLNLNIRRVVFYSL+KYNG++++PVP SQVKQIAGRAGRRGS+YPDGLTTT D
Sbjct: 420 DAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQIAGRAGRRGSVYPDGLTTTFLKD 479
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DLDYLI+CL+QPFE +K G+FP FEQVE+FA Q N +F LL+KF ++CR+D +YF+C
Sbjct: 480 DLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNLSFNDLLDKFRDSCRIDKTYFMC 539
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ D IKKVANMLE+VQGL L+DR+NFCFAPVNIRDPKAMYHLLRFA++YS + V IAMG
Sbjct: 540 QQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSHSRRVGIAMG 599
Query: 697 MPKGSAKNDAELLDLETKHQVLSM 720
+P+GSAKN ELLDLETKHQVLS+
Sbjct: 600 IPRGSAKNFVELLDLETKHQVLSI 623
>gi|224141379|ref|XP_002324050.1| predicted protein [Populus trichocarpa]
gi|222867052|gb|EEF04183.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/440 (85%), Positives = 393/440 (89%), Gaps = 28/440 (6%)
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQ 351
MKRKIIYHCGPTNSGKTYNALQ+FMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSL TGQ
Sbjct: 1 MKRKIIYHCGPTNSGKTYNALQKFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLYTGQ 60
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCG 411
EKK VPFSNHIACTVEMVST+E+YDVAVIDEIQMM+D+CRGYAWTRALLGL ADEIHLCG
Sbjct: 61 EKKHVPFSNHIACTVEMVSTEELYDVAVIDEIQMMADSCRGYAWTRALLGLKADEIHLCG 120
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
DPSVLD+V+ ICSETGDEL+EQHYERFKPLVVEAKTLLGDL+NVRSGDC+VAFSRREIFE
Sbjct: 121 DPSVLDIVKNICSETGDELYEQHYERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFE 180
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
VKMAIEKHTNH CCVIYGALPPETRRQQANLFNDQDNE+DVLVASDAVGMGLNLNIRRVV
Sbjct: 181 VKMAIEKHTNHRCCVIYGALPPETRRQQANLFNDQDNEYDVLVASDAVGMGLNLNIRRVV 240
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
F SLSKYNGDKI+PVP SQVKQIAGRAGRRGS YPDGLTTTL L+DLDYLI+CLKQPF
Sbjct: 241 FNSLSKYNGDKIVPVPPSQVKQIAGRAGRRGSRYPDGLTTTLQLEDLDYLIDCLKQPF-- 298
Query: 592 VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV
Sbjct: 299 --------------------------HLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 332
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDL 711
QGLSLEDRFNFCFAPVN RDPKAMYHL RFA+ YS PVSIAMGMPKGSA+NDAEL DL
Sbjct: 333 QGLSLEDRFNFCFAPVNFRDPKAMYHLHRFAALYSIKVPVSIAMGMPKGSARNDAELQDL 392
Query: 712 ETKHQVLSMYLWLSHQFKEE 731
ETKHQVLS+YLWLS FK+E
Sbjct: 393 ETKHQVLSVYLWLSQHFKKE 412
>gi|168038100|ref|XP_001771540.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677267|gb|EDQ63740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 608
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/578 (62%), Positives = 447/578 (77%), Gaps = 2/578 (0%)
Query: 195 FSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPI 254
F S W ++QALA+YI FFPTA +FR +F + ++ L+ +GPS+ A+KFLFPI
Sbjct: 1 FLESRWVSDQALALYINSKFFPTAVSRFRKFFSSRATPELRGLLIQMGPSNAALKFLFPI 60
Query: 255 FVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQR 314
F EFCI EF EI R+R ++ +ADLTKP W+PFAR +KRKIIYH GPTNSGKTY AL+R
Sbjct: 61 FAEFCISEFSAEINRYRELVSTADLTKPDAWYPFARAIKRKIIYHQGPTNSGKTYMALKR 120
Query: 315 FMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM 374
FMEA GIYCSPLRLLAMEVFDKVNA G+YC+L TGQEKK++PF+NH+ACTVEM +
Sbjct: 121 FMEASNGIYCSPLRLLAMEVFDKVNAEGIYCNLHTGQEKKVLPFANHLACTVEMAYLSKQ 180
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH 434
++VAVIDE+QMMSD RG+AWTRA LGL ADEIH+CGDPS + ++R +C TGDEL E
Sbjct: 181 WEVAVIDEVQMMSDEYRGWAWTRAFLGLQADEIHVCGDPSAVPLLRSLCVATGDELIENE 240
Query: 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPE 494
YERFKPL +++K+L GD NV +GDC+VAFSR++IF+VK +E TN CCV+YGALPPE
Sbjct: 241 YERFKPLRLDSKSLNGDFSNVEAGDCIVAFSRKDIFDVKREVELATNQKCCVVYGALPPE 300
Query: 495 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQI 554
TR QQA LFND ++ +DVLVASDAVGMGLNLNIRRVVFYSL K++GD P+P QVKQI
Sbjct: 301 TRTQQAKLFNDPNSGYDVLVASDAVGMGLNLNIRRVVFYSLDKFDGDAKRPIPAPQVKQI 360
Query: 555 AGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY 614
AGRAGRRGSI+PDG+TT D+ YL + L+Q FE GLFP +EQVELFA QL
Sbjct: 361 AGRAGRRGSIFPDGVTTAFYSQDIPYLEQSLQQSFEPATAAGLFPVYEQVELFASQLPEI 420
Query: 615 TFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKA 674
+F QLLE+F E CRLDGSYFLCR+D++K+VA++L+KV+GLSLEDRFNFCF PVN+RDP++
Sbjct: 421 SFAQLLERFAETCRLDGSYFLCRYDNLKRVASVLDKVKGLSLEDRFNFCFTPVNVRDPQS 480
Query: 675 MYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
+ L R+A ++S+ PV + MG P SA+++ EL+DLET+HQVLSMYLWLS F EE+F
Sbjct: 481 LGALYRYALAFSQKIPVVVQMGAPLNSARDEFELMDLETRHQVLSMYLWLSQHFPEELFV 540
Query: 735 YAKKAEAMATDIAELLGQSLTNA--NWKPESRQAGKPK 770
KA MAT IA LLGQSL + W R+AG K
Sbjct: 541 QKAKAAEMATHIATLLGQSLVQSAGRWHGRQRKAGPKK 578
>gi|302761048|ref|XP_002963946.1| hypothetical protein SELMODRAFT_81713 [Selaginella moellendorffii]
gi|300167675|gb|EFJ34279.1| hypothetical protein SELMODRAFT_81713 [Selaginella moellendorffii]
Length = 633
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/605 (59%), Positives = 453/605 (74%), Gaps = 3/605 (0%)
Query: 188 LREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA 247
L V F+ GWA QALAVYI FFP A KFR +F KCP + L+ +GP D+A
Sbjct: 17 LGAVLDRFAERGWAKTQALAVYINSKFFPQAVSKFRKFFTAKCPVLLKDVLLKVGPCDEA 76
Query: 248 VKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGK 307
++LFPIF EFCI EF +EI R+R ++ SADLTKPH WFPF R MKRK+IYHCGPTNSGK
Sbjct: 77 EEYLFPIFAEFCISEFSNEITRYRELVTSADLTKPHAWFPFTRAMKRKVIYHCGPTNSGK 136
Query: 308 TYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVE 367
TY ALQRF++A+ GIYC PLRLLAME+++K N GVYCSL TGQE++ VPF+ H+A TVE
Sbjct: 137 TYTALQRFLQAETGIYCCPLRLLAMEIYEKSNMSGVYCSLHTGQERREVPFATHLASTVE 196
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
M + + VAVIDE+QM +D RG+AWTRA L L ADE+HLCGDPS L++ + +C+ T
Sbjct: 197 MAVLTKPWSVAVIDEVQMTADEFRGWAWTRAFLALRADEVHLCGDPSALELYKTLCAATC 256
Query: 428 DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVI 487
DE E HYERFKPL ++ + G+ + +GDCVVAFSR+EIF+VK+ IE+ T H CCV+
Sbjct: 257 DEFVEHHYERFKPLTIDRTSAKGNFDFIEAGDCVVAFSRKEIFQVKLEIEQRTKHKCCVV 316
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
YGALPPETR QQA LFND + +DVLVASDA+GMGLNLNIRRV+F SL K+NG++ IPVP
Sbjct: 317 YGALPPETRTQQAKLFNDPSSGYDVLVASDAIGMGLNLNIRRVIFNSLDKFNGEQRIPVP 376
Query: 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
SQVKQIAGRAGRRGS+YP+G TTL D+ YL+EC+KQPFE GLFP FEQ+ELF
Sbjct: 377 ASQVKQIAGRAGRRGSLYPEGQVTTLYASDIPYLVECMKQPFEDAPSAGLFPVFEQLELF 436
Query: 608 AGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV 667
A QL + TF QLL++F E+CRLDG+YFLC++D++KKVA L+ + GLSLED +NFCFAPV
Sbjct: 437 ASQLPDITFSQLLDRFSEHCRLDGTYFLCKNDNLKKVAAALDAIGGLSLEDEYNFCFAPV 496
Query: 668 NIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQ 727
N RDPK+M L RFAS+YS+ PV ++MGMP+ +A ++A + DLET+HQ+LSMYLWLS
Sbjct: 497 NSRDPKSMGSLQRFASAYSRKIPVRLSMGMPQRTASDNAGIYDLETRHQLLSMYLWLSQH 556
Query: 728 FKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGYDRPRSIIK 787
F FP +A MA+ IAE+LG+SL + E+R+ + + ++RE G R +K
Sbjct: 557 FPAPAFPERHQAAEMASKIAEMLGESLVLFTGE-EARK--RQEEMREREHGGGCGRESVK 613
Query: 788 SYENR 792
++R
Sbjct: 614 QSQSR 618
>gi|302769107|ref|XP_002967973.1| hypothetical protein SELMODRAFT_88381 [Selaginella moellendorffii]
gi|300164711|gb|EFJ31320.1| hypothetical protein SELMODRAFT_88381 [Selaginella moellendorffii]
Length = 633
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/567 (61%), Positives = 435/567 (76%)
Query: 188 LREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA 247
L V F+ GWA QALAVYI FFP A KFR +F KCP + L+ +GP D+A
Sbjct: 17 LGAVLDRFAERGWAKTQALAVYINSKFFPQAVSKFRKFFTAKCPVLLKDVLLKVGPCDEA 76
Query: 248 VKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGK 307
++LFPIF EFCI EF +EI R+R ++ SADLTKPH WFPF R MKRK+IYHCGPTNSGK
Sbjct: 77 EEYLFPIFAEFCISEFSNEITRYRELVTSADLTKPHAWFPFTRAMKRKVIYHCGPTNSGK 136
Query: 308 TYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVE 367
TY ALQRF++A+ GIYC PLRLLAME+++K N GVYCSL TGQE++ VPF+ H+A TVE
Sbjct: 137 TYTALQRFLQAETGIYCCPLRLLAMEIYEKSNMSGVYCSLHTGQERREVPFATHLASTVE 196
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
M + + VAVIDE+QM +D RG+AWTRA L L ADE+HLCGDPS L++ + +C+ T
Sbjct: 197 MAVLTKPWSVAVIDEVQMTADEFRGWAWTRAFLALRADEVHLCGDPSALELYKTLCAATC 256
Query: 428 DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVI 487
DE E HYERFKPL ++ + G+ + +GDCVVAFSR+EIF+VK+ IE+ T H CCV+
Sbjct: 257 DEFVEHHYERFKPLTIDRTSAKGNFDFIEAGDCVVAFSRKEIFQVKLEIEQRTKHKCCVV 316
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
YGALPPETR QQA LFND + +DVLVASDA+GMGLNLNIRRV+F SL K+NG++ IPVP
Sbjct: 317 YGALPPETRTQQAKLFNDPSSGYDVLVASDAIGMGLNLNIRRVIFNSLDKFNGEQRIPVP 376
Query: 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
SQVKQIAGRAGRRGS+YP+G TTL D+ YL+EC+KQPFE GLFP FEQ+ELF
Sbjct: 377 ASQVKQIAGRAGRRGSLYPEGQVTTLYASDIPYLVECMKQPFEDAPSAGLFPVFEQLELF 436
Query: 608 AGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV 667
A QL + TF QLL++F E+CRLDG+YFLC++D++KKVA L+ + GLSLED +NFCFAPV
Sbjct: 437 ASQLPDITFSQLLDRFSEHCRLDGTYFLCKNDNLKKVAAALDAIGGLSLEDEYNFCFAPV 496
Query: 668 NIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQ 727
N RDPK+M L RFAS+YS+ PV ++MGMP+ +A ++A + DLET+HQ+LSMYLWLS
Sbjct: 497 NSRDPKSMGSLQRFASAYSRKIPVRLSMGMPQRTASDNAGIYDLETRHQLLSMYLWLSQH 556
Query: 728 FKEEVFPYAKKAEAMATDIAELLGQSL 754
F FP +A MA+ IAE+LG+SL
Sbjct: 557 FPAPAFPERHQAAEMASKIAEMLGESL 583
>gi|218194975|gb|EEC77402.1| hypothetical protein OsI_16164 [Oryza sativa Indica Group]
Length = 465
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/451 (71%), Positives = 381/451 (84%), Gaps = 1/451 (0%)
Query: 202 ANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIE 261
++QALA+YI S FPT A +FR + + + A++L+ L P+DDA L P F EFC+
Sbjct: 2 SDQALALYIPASAFPTYARRFRHFLPARLSLESAEHLLSL-PADDAHALLLPAFAEFCVT 60
Query: 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKG 321
DE+++ +++ +ADLT PH W+PFAR M R+++YHCGPTNSGKT+NAL RF AK G
Sbjct: 61 HLADELRKHESVMAAADLTAPHAWYPFARAMPRRVVYHCGPTNSGKTHNALTRFAAAKSG 120
Query: 322 IYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVID 381
+YCSPLRLLAMEVFDKVNALGVYCSL TGQE K VPFSNH+ACT+EM+ST+E Y+VAV+D
Sbjct: 121 VYCSPLRLLAMEVFDKVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVD 180
Query: 382 EIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL 441
EIQMM+D RGYAWTRA+LGL ADEIHLCGDPSVL +VRKIC++TGD+L YERFKPL
Sbjct: 181 EIQMMADPVRGYAWTRAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPL 240
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQAN 501
VVEAKTLLGDL+NVRSGDC+VAFSRREIFEVK+AIEK T H CCVIYGALPPETRRQQA
Sbjct: 241 VVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAK 300
Query: 502 LFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561
LFN+QDNE+DVLVASDAVGMGLNLNIRRVVFYSL+KYNGD+++PV SQVKQIAGRAGRR
Sbjct: 301 LFNEQDNEYDVLVASDAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRR 360
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLE 621
GSIYPDGLTTT LDDLDYLI+CL+QPFE KKVGLFP FEQVE FA Q + TF +LL+
Sbjct: 361 GSIYPDGLTTTFLLDDLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLD 420
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQ 652
KF ENCR+D +YF+C + IKKVANMLE++Q
Sbjct: 421 KFRENCRVDSTYFMCHQESIKKVANMLERIQ 451
>gi|413918547|gb|AFW58479.1| hypothetical protein ZEAMMB73_533569 [Zea mays]
gi|413918551|gb|AFW58483.1| hypothetical protein ZEAMMB73_201464 [Zea mays]
gi|413918555|gb|AFW58487.1| hypothetical protein ZEAMMB73_960257 [Zea mays]
Length = 511
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/500 (64%), Positives = 398/500 (79%), Gaps = 1/500 (0%)
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++ M+ +ADLT P TW+P AR M+R+++YHCGPTNSGKT+NAL F AK G+YC
Sbjct: 4 DDLTARDLMMAAADLTAPQTWYPSARAMRRRVVYHCGPTNSGKTHNALASFSAAKSGVYC 63
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQ 384
SPLRLLAME+FDKVNA GV CSL TGQE K V F++H+ACT+EMVST+E+Y+VAV+DE+Q
Sbjct: 64 SPLRLLAMEIFDKVNATGVSCSLRTGQEVKEVAFASHLACTIEMVSTEEIYEVAVVDEVQ 123
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
MM+D RG AWTRALLGL A+EIHLCGD SVL V+RKIC++TGD+L YERFKPLVVE
Sbjct: 124 MMADPVRGSAWTRALLGLRAEEIHLCGDDSVLSVIRKICADTGDDLLVHQYERFKPLVVE 183
Query: 445 AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504
TL G +N+RSGD VVAFSR++IFE+K+AIE +T+H CCVIYGALPPETRRQQA LFN
Sbjct: 184 ENTLRGYFQNIRSGDWVVAFSRKKIFEIKLAIETYTHHKCCVIYGALPPETRRQQAELFN 243
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564
+ NE+DVLVA+DAVGMGLNLNIRRVVFY+L KY+G+K VP S VKQIAGRAGRRGS
Sbjct: 244 QEHNEYDVLVATDAVGMGLNLNIRRVVFYTLIKYDGEKTASVPASLVKQIAGRAGRRGSA 303
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFG 624
YP GL TT DL YL CL++P E +KVGLFP FEQ+E+FA Q TF LL K
Sbjct: 304 YPHGLATTFKY-DLCYLTRCLEEPLEEAEKVGLFPTFEQLEMFASQFPELTFNNLLNKLC 362
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
+ CR+D +YF+C+HD++KKVA+MLE V GLSL+ R+ FC APVN R+ +AM HLLRFA++
Sbjct: 363 DTCRIDDTYFICQHDNMKKVADMLEGVHGLSLKSRYGFCLAPVNTRNSEAMDHLLRFANN 422
Query: 685 YSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMAT 744
YS++ V++ + MP G A ND + LDLETKHQVLSMYLWL+ F E+ FP+ ++A+ M+T
Sbjct: 423 YSESHYVTMGLEMPSGYATNDTQFLDLETKHQVLSMYLWLAQHFGEDNFPHVQEAQTMST 482
Query: 745 DIAELLGQSLTNANWKPESR 764
+IA+LLGQSL WKP+ R
Sbjct: 483 NIADLLGQSLAKGCWKPQLR 502
>gi|413918542|gb|AFW58474.1| hypothetical protein ZEAMMB73_808258 [Zea mays]
Length = 441
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/440 (64%), Positives = 349/440 (79%), Gaps = 3/440 (0%)
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
ME+FDKVNA GV CSL TGQE K V F++H+ACT+EMVST+E+Y+VAV+DE+QMM+D R
Sbjct: 1 MEIFDKVNATGVSCSLRTGQEVKEVAFASHLACTIEMVSTEEIYEVAVVDEVQMMADPVR 60
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G AWTRALLGL A+EIHLCGD SVL V+RKIC++TGD+L YERFKPLVVE TL G
Sbjct: 61 GSAWTRALLGLRAEEIHLCGDDSVLSVIRKICADTGDDLLVHQYERFKPLVVEENTLRGY 120
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
+N+RSGD VVAFSR++IFE+K+AIE +T+H CCVIYGALPPETRRQQA LFN + NE+D
Sbjct: 121 FQNIRSGDWVVAFSRKKIFEIKLAIETYTHHKCCVIYGALPPETRRQQAELFNQEHNEYD 180
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTT 571
VLVA+DAVGMGLNL+IRRVVFY+L KY+G+K VP S VKQIAGRAGRRGS YP GL T
Sbjct: 181 VLVATDAVGMGLNLSIRRVVFYTLIKYDGEKTASVPASLVKQIAGRAGRRGSAYPHGLAT 240
Query: 572 TLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDG 631
T DL YL CL++P E +KVGLFP FEQ+E+FA Q TF LL K + CR+D
Sbjct: 241 TFKY-DLCYLTRCLEEPLEEAEKVGLFPTFEQLEMFASQFPELTFNNLLNKLCDTCRIDD 299
Query: 632 SYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV 691
+YF+C+HD++KKVA+MLE V GLSL+ R+ FC AP+N R+ +AM HLLRFA++YSK+ V
Sbjct: 300 TYFICQHDNMKKVADMLEGVHGLSLKSRYGFCLAPMNTRNSEAMDHLLRFANNYSKSHYV 359
Query: 692 SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLG 751
++ + MP G A ND + LDLETKHQVLSMYLWL+ F E+ FP+ ++A+ M+T+IA+LLG
Sbjct: 360 TMGLEMPSGYATNDTQFLDLETKHQVLSMYLWLAQHFGEDNFPHVQEAQTMSTNIADLLG 419
Query: 752 QSLTNANWKPESRQA--GKP 769
QSL WKP+ R G+P
Sbjct: 420 QSLAKGCWKPQLRYQFIGQP 439
>gi|307110287|gb|EFN58523.1| hypothetical protein CHLNCDRAFT_19567 [Chlorella variabilis]
Length = 681
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/562 (48%), Positives = 365/562 (64%), Gaps = 16/562 (2%)
Query: 191 VFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKF 250
+ R F NSG +QALA+Y+ + A +F+ + + ++ L+ L DD +
Sbjct: 118 LMRNFRNSGAVKDQALALYVNSKLYAEAVPRFQEFLLAAMDPELCSALMQLQVRDDQ-QA 176
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
LFP F +F +E + +IK +R MI++ DL PH WFP AR ++R+IIYH GPTNSGKTYN
Sbjct: 177 LFPYFAQFVLERYMADIKAYRDMIQTVDLRNPHQWFPVARALQRRIIYHAGPTNSGKTYN 236
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
ALQ A+ GIYC PLRLLAMEV+D NA G+YC+L+TGQE++ +P + H ACTVEMV+
Sbjct: 237 ALQAMRSAQSGIYCGPLRLLAMEVYDTFNADGLYCNLITGQERRELPGAEHTACTVEMVN 296
Query: 371 TDEMYDVAVIDEIQMMSD------------ACRGYAWTRALLGLMADEIHLCGDPSVLDV 418
DVAVIDEIQM+ D CRG+AWTRAL+G A+E+HLCGD S L +
Sbjct: 297 MQRRVDVAVIDEIQMIGDESRQELCCCPGICCRGWAWTRALMGAPANEVHLCGDGSALPL 356
Query: 419 VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK 478
VRKIC E G+ L Y+RF L VE L+G V+ GDC+VAFSR++I+ +K IE+
Sbjct: 357 VRKICEEMGETLEVNTYDRFTTLEVEPGGLVGGYSAVQPGDCIVAFSRKDIYNIKQFIEQ 416
Query: 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
T H CV+YGALPPETRRQQA LFN+ DN + V+VASDAVGMGLNLNIRR++F+S++K
Sbjct: 417 ETKHRACVVYGALPPETRRQQAKLFNEPDNAYRVMVASDAVGMGLNLNIRRIIFHSVNKR 476
Query: 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE--VVKKVG 596
G K +PV S +KQIAGRAGRR S +P GL T LN D+ L E + P + V G
Sbjct: 477 EGGKQVPVSVSMIKQIAGRAGRRSSQWPKGLATCLNPTDVPRLQEAIDVPLDQLVTPTAG 536
Query: 597 LFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL 656
LFP FE E+FAGQ + + LL F LD SYF C+ D + + A +L ++ GLS+
Sbjct: 537 LFPEFEHFEVFAGQRPDEPYSSLLGAFEREALLDSSYFFCKQDSVVQAAQLLGEL-GLSV 595
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQ 716
+D F+FC AP + D + LL FA+ YSK PV++ + +P + EL +E HQ
Sbjct: 596 KDMFSFCMAPASASDLRLAAALLHFATKYSKGLPVTLDISIPNRVPASTDELRHMEAAHQ 655
Query: 717 VLSMYLWLSHQFKEEVFPYAKK 738
V ++LWLS++F EVFP +K
Sbjct: 656 VAMLWLWLSYRFDPEVFPQREK 677
>gi|296082899|emb|CBI22200.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/273 (91%), Positives = 264/273 (96%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R+MI+SADLTKPHTWFPFAR MKRKIIYHCGPTNSGKTYNALQR+MEAKKGIYCSPLRLL
Sbjct: 199 RSMIKSADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRYMEAKKGIYCSPLRLL 258
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
AMEVFDKVNALG+YCSL TGQEKK VPFSNH +CTVEMVSTD++YDVAVIDEIQMMSD C
Sbjct: 259 AMEVFDKVNALGIYCSLHTGQEKKNVPFSNHTSCTVEMVSTDDIYDVAVIDEIQMMSDPC 318
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RGYAWTRALLGL ADEIHLCGDPSVL+VVRKICSETGDEL EQHYERFKPLVVEAKTLLG
Sbjct: 319 RGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQHYERFKPLVVEAKTLLG 378
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
+L+NVRSGDCVVAFSRREIFEVK+AIEKHTNH CCVIYGALPPETRRQQA+LFND DNE+
Sbjct: 379 ELQNVRSGDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPETRRQQASLFNDPDNEY 438
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI
Sbjct: 439 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 471
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 67/91 (73%), Gaps = 6/91 (6%)
Query: 724 LSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGYDRPR 783
+++ ++E FPY KKAE MAT IA+LLGQSL+ A WKPESRQAGKPK QQ+EDGY+RPR
Sbjct: 493 VANMLQKETFPYVKKAETMATGIADLLGQSLSKACWKPESRQAGKPKP-QQKEDGYERPR 551
Query: 784 SIIKSYENRKRQ-----EKTSLTLHTEKIPA 809
S++K ++ R+ + EK H+EK+ A
Sbjct: 552 SLVKLFDERRHEKSPEHEKFPQHEHSEKVAA 582
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/28 (89%), Positives = 27/28 (96%)
Query: 623 FGENCRLDGSYFLCRHDHIKKVANMLEK 650
F ENC+LDGSYFLCRHDHIKKVANML+K
Sbjct: 472 FSENCQLDGSYFLCRHDHIKKVANMLQK 499
>gi|384250636|gb|EIE24115.1| hypothetical protein COCSUDRAFT_28627 [Coccomyxa subellipsoidea
C-169]
Length = 651
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 267/576 (46%), Positives = 361/576 (62%), Gaps = 17/576 (2%)
Query: 195 FSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPI 254
FS S + A A+YI F TA+ +F +F + + LV L P + A LF +
Sbjct: 14 FSKSAKMRDSARALYINNQLFFTASTEFSKWFGRGMSAQLKDTLVALEPGE-AEDALFNL 72
Query: 255 FVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQR 314
F F + F D+IK++ I+ DL KPH W+P AR ++R+++YH GPTNSGKTYNAL+
Sbjct: 73 FAPFALNTFGDQIKKYSEAIKMLDLRKPHLWYPMARALQRRLVYHMGPTNSGKTYNALRA 132
Query: 315 FMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM 374
A+ G+YC PLRLLAMEV+D++NA G +C+L TGQE+K VPF+ H ACT+EM + +
Sbjct: 133 MCAAETGLYCGPLRLLAMEVYDELNASGTFCNLTTGQERKEVPFAQHTACTIEMTNLSKR 192
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH 434
DVAV+DEIQ + D RG+AWTRAL GL A+EIH+CGD S L +VR + + G+EL
Sbjct: 193 VDVAVVDEIQQIGDDSRGWAWTRALQGLAANEIHMCGDGSALPLVRTLAHQMGEELQVHS 252
Query: 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPE 494
YERF PL +EA+ L +V+ GDC+VAFSRR+I+++K IE T CV+YGALPPE
Sbjct: 253 YERFTPLAIEAEGLARGYLDVQPGDCIVAFSRRDIYDIKQLIEAGTGQRVCVVYGALPPE 312
Query: 495 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQI 554
RR QA LFND D+ +DVLVASDAVGMGLNLNIRR++F++L K +G + +Q K +
Sbjct: 313 MRRTQARLFNDPDSGYDVLVASDAVGMGLNLNIRRIIFHTLEKTDGSFARQIMATQTKGM 372
Query: 555 --AGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK--KVGLFPFFEQVELFAGQ 610
AGRAGRR S+Y GL T LN D+ L E + P E + GLFP FEQ+E FAG
Sbjct: 373 LCAGRAGRRNSVYGQGLVTCLNRADIPRLQEAVATPLEALSTPTAGLFPEFEQLEAFAGN 432
Query: 611 LSNYTFCQLLEK------------FGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLED 658
F +L + F R+DG+Y C+ + + + A +L KV+GLSL++
Sbjct: 433 QLEQDFHNILTRQAPLHTSLLSMLFAAEARVDGTYMFCKQESVIQAARLLSKVEGLSLQE 492
Query: 659 RFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVL 718
RF FC AP N+R+P A LLRFA Y+ V + + + EL DLE HQV+
Sbjct: 493 RFWFCMAPANLRNPVAAAALLRFAQKYAAKQQVPVDVPWKDRVPQTSQELCDLEAAHQVI 552
Query: 719 SMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
S+++WLSH+F EE F + E M I ++ + L
Sbjct: 553 SLWVWLSHRFDEEFFVGRPRVEEMCEQIISIMSEGL 588
>gi|301104419|ref|XP_002901294.1| ATP-dependent RNA helicase SUPV3L1, putative [Phytophthora
infestans T30-4]
gi|262100769|gb|EEY58821.1| ATP-dependent RNA helicase SUPV3L1, putative [Phytophthora
infestans T30-4]
Length = 817
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/620 (43%), Positives = 380/620 (61%), Gaps = 38/620 (6%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDV---AQYLVWLGPSDDAVK-----FLFPIFVEFC-- 259
+ ++ + AA FR F+ + P Q L+ G D VK +P FV++
Sbjct: 166 MNQAEWAIAAASFRKSFLSE-PSKYFKNQQELLAFGRDLDDVKRHNSFIFYPYFVDYAKA 224
Query: 260 -----IEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQR 314
++ D + + + DL PH +PFA MKRKIIYH GPTNSGKT+ AL+R
Sbjct: 225 NSYLPTDQDNDNVLSLQQL---TDLRLPHEMYPFATAMKRKIIYHEGPTNSGKTHQALER 281
Query: 315 FMEAKK--GIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTD 372
+A + GIYC PLRLLA+E+F+++NA G+Y SL+TGQEKKLVP+S H++CTVEM + +
Sbjct: 282 LKQAGEDGGIYCGPLRLLALEIFERLNADGLYTSLVTGQEKKLVPYSTHVSCTVEMANIN 341
Query: 373 EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE 432
+DVAV+DEIQ++ D RG+AWTRAL GL A+EIH+CG + +V+K TGD+
Sbjct: 342 RPWDVAVVDEIQLIGDPQRGWAWTRALFGLQANEIHVCGSGEAVHLVKKFAETTGDDFEL 401
Query: 433 QHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALP 492
+ YER PL + A T L ++RSGDCVVAFSRR+IF++K IE T CC+IYG LP
Sbjct: 402 RSYERRSPLEI-APTHLASYSHIRSGDCVVAFSRRDIFQIKRDIEVKTGQKCCIIYGQLP 460
Query: 493 PETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK--IIPVPGSQ 550
PETR QQA LFND++N+F++LVASDA+GMGLNLNIRRVVF ++ KY+G +I +P S
Sbjct: 461 PETRSQQARLFNDRNNDFNILVASDAIGMGLNLNIRRVVFATVKKYSGSSGGMIDIPPSL 520
Query: 551 VKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQ 610
KQIAGRAGR GS + G T + +DL+YL E + + GLFP EQ+E FA Q
Sbjct: 521 AKQIAGRAGRYGSDFASGEATCVLEEDLEYLKESYDEVPTPLTSAGLFPSSEQMEEFARQ 580
Query: 611 LSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNI 669
L T L++K+ RLDG YF+C H +K A +L + + L+L DRF FC +PV +
Sbjct: 581 LPGITDLADLVDKYVMLARLDGDYFMCNHQDMKDAATLLRETE-LTLSDRFTFCMSPVGL 639
Query: 670 RDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFK 729
R+P A L +A ++S V + + +PK + + L D+E K +++ +YLWLS +F
Sbjct: 640 RNPLARRVFLEYARAHSLGQSVRLDIYLPKYAPRTAEALGDVEIKAKIIDLYLWLSFRF- 698
Query: 730 EEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQA--------GKPKLHQQREDGYDR 781
E+ F A + T + EL+ Q L N + E ++ G+ + + DG DR
Sbjct: 699 EDTFVEKDLALELKTRVLELVEQGLVNTTYHREDKKTRWSSGAANGRRSASRGQFDG-DR 757
Query: 782 PRSIIKSYENRK--RQEKTS 799
R K ++R R++KT+
Sbjct: 758 FRQQTKDGDSRPNWRRDKTT 777
>gi|348689571|gb|EGZ29385.1| hypothetical protein PHYSODRAFT_537681 [Phytophthora sojae]
Length = 649
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/493 (48%), Positives = 328/493 (66%), Gaps = 8/493 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK--GIYCSPLRLLAMEVF 335
DL PH +P+A MKR+IIYH GPTNSGKT+ AL+R +A + GIYC PLRLLA+E++
Sbjct: 98 DLRLPHEMYPYATAMKRRIIYHEGPTNSGKTHQALERLKQAGEDGGIYCGPLRLLALEIY 157
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+++N+ G+Y SL+TGQEKK+VP+S H++CTVEM + + +DVAVIDEIQ++ D RG+AW
Sbjct: 158 ERMNSDGLYTSLVTGQEKKIVPYSTHVSCTVEMANINRPWDVAVIDEIQLIGDPQRGWAW 217
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
TRAL GL A EIH+CG + +V+K TGDE + YER PL + + T L + N+
Sbjct: 218 TRALFGLQAKEIHVCGSGEAVHLVKKFAETTGDEFELRSYERRSPLEI-STTHLKNYSNI 276
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
RSGDCVVAFSRR+IF++K IE T CC+IYG LPPETR QQA LFND++N+F++LVA
Sbjct: 277 RSGDCVVAFSRRDIFQIKRDIEIKTGQKCCIIYGQLPPETRSQQARLFNDRNNDFNILVA 336
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDK--IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
SDAVGMGLNLNIRRVVF ++ KY+G ++ +P S KQIAGRAGR GS + G T L
Sbjct: 337 SDAVGMGLNLNIRRVVFATVKKYSGGSGGMVDIPASLAKQIAGRAGRYGSDFASGEATCL 396
Query: 574 NLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGS 632
+DL+YL E + + GLFP EQ+E FA QL T L++K+ RLDG
Sbjct: 397 LEEDLEYLKESYDEVPTPLTSAGLFPSSEQMEEFAKQLPGITDLADLVDKYVMLARLDGD 456
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS 692
YF+C H +K A +L + L+L DRF FC +PV++R+P A L +A ++S V
Sbjct: 457 YFMCNHQDMKDAATLLRDTE-LTLSDRFTFCMSPVSLRNPLARKVFLEYARAHSLGQSVK 515
Query: 693 IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQ 752
+ + +PK + L D+E K +++ +YLWLS +F EE F A + + EL+ Q
Sbjct: 516 LDIYLPKYPPRTADALGDVEIKAKIIDLYLWLSFRF-EETFVEKDLALELKARVLELVEQ 574
Query: 753 SLTNANWKPESRQ 765
L N + E ++
Sbjct: 575 GLVNTTYNREEKK 587
>gi|452825753|gb|EME32748.1| ATP-dependent RNA helicase (mitochondrial) [Galdieria sulphuraria]
Length = 739
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/606 (41%), Positives = 371/606 (61%), Gaps = 32/606 (5%)
Query: 204 QALAVYIGKSFFPTAAGKFRSYFIKKCP-------DDVAQY---LVWLGPSDD--AVKFL 251
+A+ + I K +P A FR + + +DV Y L L DD A++ L
Sbjct: 122 KAIEIGISKEIYPRALRLFRKHVHEATGRKELYTREDVELYNVVLKALSQDDDIKALEEL 181
Query: 252 FPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA 311
FP F+E+ + FP+EI+ M E ADL PH FP AR +RKI+YH GPTNSGKTY A
Sbjct: 182 FPSFIEYTKQYFPEEIQVRNRMREYADLRLPHLLFPEARKRRRKIVYHFGPTNSGKTYFA 241
Query: 312 LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVST 371
++R AK G+Y PLRLLA E F+K+NA GV+ +L+TG+EKK++PF++HIACT+EM+ST
Sbjct: 242 MERLKSAKNGVYAGPLRLLAWEAFEKMNADGVFTNLMTGEEKKIIPFASHIACTIEMLST 301
Query: 372 DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELH 431
+E Y+VAV+DEIQM+ DA RG++WTR LLG+ A E+H+CGDPS ++++++ GDE
Sbjct: 302 EEEYEVAVLDEIQMIGDAQRGWSWTRGLLGVQASEVHVCGDPSTKELLKQLAQRCGDEFE 361
Query: 432 EQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGAL 491
E+ Y R L + K+L GDL ++ GD +V FSRR+++E K +E+ T CCVIYG+L
Sbjct: 362 EKEYFRQTSLEISRKSLNGDLNKLQDGDTIVVFSRRDVYETKYRVEQTTGKRCCVIYGSL 421
Query: 492 PPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG----DKIIPVP 547
PPETR QA LFND ++E+ +LVA+DA+GMGLNLNI+R++F SL K++G + P+
Sbjct: 422 PPETRSYQARLFNDPESEYKILVATDAIGMGLNLNIKRIIFASLEKFHGLSSSARKEPLS 481
Query: 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
+ ++QIAGRAGR SIYP G T L D+ L E + + GL P +Q+ELF
Sbjct: 482 FALIRQIAGRAGRAFSIYPHGEATCLYEHDIPRLQEAFQGSVPSIDSAGLMPTLDQMELF 541
Query: 608 AGQLS-NYTFCQLLEKFGENCRLDGSYFLCRHD--HIKKVANMLEKVQGLSLEDRFNFCF 664
A + N LL+ F E +LD + LC ++++A +L++ LSL+++F FC
Sbjct: 542 ASVVGDNVKLSTLLDLFAEYAKLDNLFSLCEQKFLEMRRIARLLQQAGTLSLKEQFEFCQ 601
Query: 665 APVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWL 724
APVNI DP M +LL FA + + + + + +G +L LE+++++ +Y +L
Sbjct: 602 APVNISDPFLMKYLLSFAKNVATGSRSELTVRPYQGKLLTQLDLQKLESRYRIFDLYSYL 661
Query: 725 SHQFKEEVFPYAKKAEAMATDIAELLGQSLT---------NANWKPESRQAGKPKLHQQR 775
S +F E FP + A A + L +LT N N P++ + +QR
Sbjct: 662 SEKFGREFFPDYQVALAYKRRTIQSLETALTEGVRFQDDLNKNTMPKNNSS----YEEQR 717
Query: 776 EDGYDR 781
+D + R
Sbjct: 718 QDNWFR 723
>gi|325185729|emb|CCA20210.1| ATPdependent RNA helicase SUPV3L1 putative [Albugo laibachii Nc14]
Length = 806
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/544 (42%), Positives = 338/544 (62%), Gaps = 23/544 (4%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAK------KGIYCSPLR 328
E DL PH +P + +KRKIIYH GPTNSGKT+NAL+R A G+YC PLR
Sbjct: 240 ELTDLRLPHELYPRSNGLKRKIIYHEGPTNSGKTHNALERLKNASIGGEYSGGLYCGPLR 299
Query: 329 LLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
LLA+E+++++N G Y SL+TGQEKK++P + H+A TVEM + + +DVAVIDE+Q++ D
Sbjct: 300 LLALEIYERMNLEGFYTSLITGQEKKIMPHATHVASTVEMANINVKWDVAVIDEVQLIGD 359
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWTRAL GL A EIH+CG ++++R TGD+ + Y+R L +E +
Sbjct: 360 LQRGWAWTRALFGLQAREIHVCGSGDAVNLIRNFAETTGDDFELKSYKRRSSLEIET-SH 418
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
+ L +++GDCVVAFSRREI+++K IE+ T CC++YG LPP+TR QQA LFND ++
Sbjct: 419 VSSLSQIQAGDCVVAFSRREIYQIKRDIERTTGMKCCIVYGLLPPQTRSQQARLFNDPNS 478
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK--IIPVPGSQVKQIAGRAGRRGSIYP 566
+ VLVASDA+GMGLNLNIRR++F ++ KYNG + + S VKQIAGRAGR G+ +
Sbjct: 479 GYSVLVASDAIGMGLNLNIRRIIFSNVKKYNGASGGMADISPSLVKQIAGRAGRYGTQFA 538
Query: 567 D-GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFG 624
D G ++ +DLDY+ +P ++ GLFP EQ+E FA L T +L++K+
Sbjct: 539 DVGKVSSFRKEDLDYIRTSFYEPLTPLRSAGLFPNSEQMEQFAAHLPGVTDLAELVDKYV 598
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
RLDG YF+C H +K+ A++L+ + L L DRF FC AP+N R+ A +AS+
Sbjct: 599 MLARLDGEYFMCNHADLKESADLLKDIP-LVLSDRFTFCMAPLNTRNMLARRIFQDYASA 657
Query: 685 YSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMAT 744
++K V + + +P+ + + L D+E K Q++ +YLWLS +F + F + A + T
Sbjct: 658 HAKLDRVKLDIYLPRYAPRTSEALRDVEIKAQIIDLYLWLSQRFP-DTFVEQELAITLKT 716
Query: 745 DIAELLGQSLTNANWKPESRQAGKPKLHQQREDGYDRPRSIIKSYENRKRQEKTSLTLHT 804
+ L+ Q L N + ++ Q P+ + E G +YE Q KT + T
Sbjct: 717 QVLSLVEQGLHNTTYNVKNEQNRSPRSIKFIEKG---------AYEQAYAQRKTYIR-QT 766
Query: 805 EKIP 808
++ P
Sbjct: 767 QRSP 770
>gi|296220503|ref|XP_002756336.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Callithrix jacchus]
Length = 786
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/566 (42%), Positives = 347/566 (61%), Gaps = 35/566 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G + V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAH--VDDLFPFFLRHAKQIFPVLECK 177
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 178 DDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 231
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V ++H+ACTVEM S Y+VAVI
Sbjct: 232 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPDGKQASHVACTVEMCSVTTPYEVAVI 291
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+EIHLCG+P+ +D+V ++ TG+E+ Q Y+R P
Sbjct: 292 DEIQMIRDPARGWAWTRALLGLCAEEIHLCGEPAAIDLVTELMFTTGEEVEVQDYKRLTP 351
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V + L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 352 ISVLDRA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 409
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIA
Sbjct: 410 KKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIA 469
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N +DL L E L +P + ++ GL P EQ+E+FA L + T
Sbjct: 470 GRAGRFSSQFKEGEVTTMNREDLSLLKEILNRPVDPIRAAGLHPTAEQIEMFAYHLPDTT 529
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 530 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVC 588
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 589 SSLLQFARQYSRNEPLTFAWLRRHIKWPLLPPKNIKDLVDLEAIHDVLDLYLWLSYRFM- 647
Query: 731 EVFPYAKKAEAMATDIAELLGQSLTN 756
++FP A + ++ ++ + N
Sbjct: 648 DMFPDASIIRDLQKELDAIIQDGVHN 673
>gi|196009822|ref|XP_002114776.1| hypothetical protein TRIADDRAFT_58600 [Trichoplax adhaerens]
gi|190582838|gb|EDV22910.1| hypothetical protein TRIADDRAFT_58600 [Trichoplax adhaerens]
Length = 681
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/525 (42%), Positives = 330/525 (62%), Gaps = 11/525 (2%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKR 269
I A KFRS I K ++ + + + +D V L+P F+++ +E+P I
Sbjct: 86 IEDDLLAKVARKFRSKAISKNNRELNETFIRVRNGEDKVMALWPYFLKYAKKEYP-LIGC 144
Query: 270 FRAMIESADLTKPHTWFPFAR-VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLR 328
+ ++ ++ P +W+ AR + RKIIYH GPTNSGKTY+AL +F +A+K IYC PLR
Sbjct: 145 IKDLLYHSNFRSPVSWYQEARNIAPRKIIYHAGPTNSGKTYHALHKFFKAEKAIYCCPLR 204
Query: 329 LLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAVIDEIQ 384
LLA E++ + V C L+TG+E+ V S H++CTVEM + +E YD+ +IDEIQ
Sbjct: 205 LLAHEIYRRSLEANVKCDLITGEERLYVDPNGFSSQHVSCTVEMANINEHYDIGIIDEIQ 264
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
M+ D RG+AWTRALLGL A E+HLCGDPS +D++RK+ GDE Q Y+R PL V+
Sbjct: 265 MIKDDLRGFAWTRALLGLCAFELHLCGDPSGIDLIRKLADSCGDEFEVQRYDRLVPLSVQ 324
Query: 445 AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504
+ G L NV GDCVVAFSR+E+F++K ++E T+H C +IYG LP TR QA+LFN
Sbjct: 325 KNSFDGKLSNVTKGDCVVAFSRKELFKLKYSVESKTDHKCAIIYGGLPSVTRAHQADLFN 384
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564
D +N+++VLVASDA+GMGLNLNI+R++F SL K++G +I + S +Q+AGRAGR S
Sbjct: 385 DPNNDYNVLVASDAIGMGLNLNIKRIIFNSLMKFDGLEITSLTPSHARQVAGRAGRFRSD 444
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFG 624
+ G TTL +DDL + L P E +++ GL + VELF+ L +F +L+ F
Sbjct: 445 FNIGEITTLFVDDLPIIQRLLDTPIEPIQRAGLGLTWSDVELFSYYLPEASFTDILDLFS 504
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
++ +F+CR++ K VA +++ V+GL L++++ FC AP++ R+P +L+FA+
Sbjct: 505 NLVKVGDKFFICRNEEFKNVAAIVDTVEGLLLKEKYIFCLAPIDHRNPLMSSAVLKFATH 564
Query: 685 YSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWL 724
K ++ A + P ++ +L LE + +L +YLWL
Sbjct: 565 VGKRTSITDASLKELIPYPFKMPDDEEKLFTLEAVYDILDLYLWL 609
>gi|355722682|gb|AES07652.1| suppressor of var1, 3-like 1 [Mustela putorius furo]
Length = 764
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/544 (43%), Positives = 338/544 (62%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 98 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLDCKDD 157
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 158 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 211
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ + + H+ACTVEM S YDVAVIDE
Sbjct: 212 LKLLAHEIFEKSNAAGVPCDLVTGEERVAIEPDGKQAAHVACTVEMCSVTTPYDVAVIDE 271
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+EIHLCG+ + +D+V ++ TG+E+ ++YER P+
Sbjct: 272 IQMIRDPGRGWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTGEEVEVRNYERLTPIS 331
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 332 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 389
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K G++ I P+ SQ QIAGR
Sbjct: 390 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEREIEPITTSQALQIAGR 449
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S Y +G TT+N +DL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 450 AGRFSSKYKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 509
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 510 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 568
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ + + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 569 LLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFI-DM 627
Query: 733 FPYA 736
FP A
Sbjct: 628 FPDA 631
>gi|410975257|ref|XP_003994050.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Felis
catus]
Length = 788
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/544 (43%), Positives = 339/544 (62%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 122 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 181
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 182 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 235
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 236 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVEPDGKQAAHVACTVEMCSVTTPYEVAVIDE 295
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ ++Y+R P+
Sbjct: 296 IQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYKRLTPIS 355
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 356 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 413
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K G+K I P+ SQ QIAGR
Sbjct: 414 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEIEPITTSQALQIAGR 473
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S Y +G TT+N +DL+ L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 474 AGRFSSKYKEGEVTTMNREDLNLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 533
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 534 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 592
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ + + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 593 LLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFI-DM 651
Query: 733 FPYA 736
FP A
Sbjct: 652 FPDA 655
>gi|291404244|ref|XP_002718491.1| PREDICTED: suppressor of var1, 3-like 1 [Oryctolagus cuniculus]
Length = 787
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 241/544 (44%), Positives = 337/544 (61%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV ++V + S V LFP F+ + FP D+
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 179
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+QR++ AK G+YC P
Sbjct: 180 LRKI------SDLRIPPNWYPEARAIRRKIIFHSGPTNSGKTYHAIQRYLSAKSGVYCGP 233
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA V C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 234 LKLLAHEIFEKSNAADVPCDLVTGEERVTVGPDGKQAAHVACTVEMCSVTTPYEVAVIDE 293
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ DA RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ +HY+R P+
Sbjct: 294 IQMIRDAARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRHYKRLTPIS 353
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 411
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND + +LVA+DA+GMGLNL+IRR++FYSL K G+K I P+ SQ QIAGR
Sbjct: 412 FNDPSDPCKILVATDAIGMGLNLSIRRIIFYSLLKPTVNEKGEKEIEPITTSQALQIAGR 471
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT+N +DL L E L +P E +K GL P EQ+E+FA L + T
Sbjct: 472 AGRFSSQFKEGEVTTMNREDLRLLKEILNRPVEPIKAAGLHPTAEQIEMFAYHLPDTTLS 531
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 532 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 590
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA +S+N P++ A + P KN EL+DLE H VL +YLWLS++F ++
Sbjct: 591 LLQFARQFSRNEPLTFAWLRRYIRWPLLPPKNIKELMDLEAVHDVLDLYLWLSYRFM-DM 649
Query: 733 FPYA 736
FP A
Sbjct: 650 FPDA 653
>gi|119574700|gb|EAW54315.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_b [Homo
sapiens]
Length = 788
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/546 (43%), Positives = 338/546 (61%), Gaps = 33/546 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAGKSHADDLFPFFLRHAKQIFPVLDCK 178
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 179 DDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 232
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VAVI
Sbjct: 233 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVI 292
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R P
Sbjct: 293 DEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTP 352
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 ISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 410
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ QIA
Sbjct: 411 KKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIA 470
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L + T
Sbjct: 471 GRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDAT 530
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVC 589
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 590 SSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFM- 648
Query: 731 EVFPYA 736
++FP A
Sbjct: 649 DMFPDA 654
>gi|432106720|gb|ELK32372.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial, partial [Myotis
davidii]
Length = 747
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/566 (41%), Positives = 344/566 (60%), Gaps = 33/566 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV +++ V LFP F+ + FP
Sbjct: 78 LFHQAFISFRNYILQSHSLDVDIHIILNDICFSAGKSHVDDLFPFFLRHAKQIFPVLECK 137
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR ++RK+I+H GPTNSGKTY+A+Q+++ AK G+YC
Sbjct: 138 DDLRKI------SDLRIPPNWYPEARAIQRKVIFHSGPTNSGKTYHAIQKYLSAKSGVYC 191
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ LV + H+ACTVEM S Y+VAVI
Sbjct: 192 GPLKLLAHEIFEKSNAEGVPCDLVTGEERVLVEPNGKQAAHVACTVEMCSVTTPYEVAVI 251
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ ++Y R P
Sbjct: 252 DEIQMIKDPARGWAWTRALLGLCAEEVHLCGEAAAIDLVTELLYTTGEEVEVRNYTRLTP 311
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 312 ISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 369
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIA
Sbjct: 370 KKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIA 429
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S Y +G TT+N +DL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 430 GRAGRFSSKYKEGEVTTMNREDLCLLKEILNKPVDPIKAAGLHPTAEQIEMFAYHLPDTT 489
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 490 LSNLIDIFVDFSQVDGQYFVCNLDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVC 548
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P N +L+DLE H VL +YLWLS++F
Sbjct: 549 SSLLQFARQYSRNEPLTFAWLRRYIKWPLHPPNNIKDLMDLEAVHDVLDLYLWLSYRFI- 607
Query: 731 EVFPYAKKAEAMATDIAELLGQSLTN 756
++FP A + ++ ++ + + N
Sbjct: 608 DMFPDASLVRDLQKELDGIIQEGVHN 633
>gi|73952813|ref|XP_546136.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
isoform 1 [Canis lupus familiaris]
Length = 788
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/564 (42%), Positives = 346/564 (61%), Gaps = 31/564 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 121 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 180
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 181 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 234
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 235 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVGPDGKQAAHVACTVEMCSVTTPYEVAVIDE 294
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ ++Y+R P+
Sbjct: 295 IQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYKRLTPIS 354
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V F++ +I+ V IE VIYG+LPP T+ QA
Sbjct: 355 V-LDHALESLDNLRPGDCIVCFNKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 412
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K G+K I P+ SQ QIAGR
Sbjct: 413 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEIEPITTSQALQIAGR 472
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S Y +G TT+N +DL L E LK+P +K GL P EQ+E+FA L + T
Sbjct: 473 AGRFSSKYKEGEVTTMNREDLSLLKEILKRPVNPIKAAGLHPTAEQIEMFAYHLPDTTLS 532
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 533 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 591
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ + + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 592 LLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFI-DM 650
Query: 733 FPYAKKAEAMATDIAELLGQSLTN 756
FP A + ++ ++ + + N
Sbjct: 651 FPDANFIRDLQKELDGIIQEGVHN 674
>gi|355562538|gb|EHH19132.1| hypothetical protein EGK_19777 [Macaca mulatta]
gi|355782877|gb|EHH64798.1| hypothetical protein EGM_18109 [Macaca fascicularis]
Length = 789
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/546 (43%), Positives = 338/546 (61%), Gaps = 33/546 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAGKSHVDDLFPFFLRHAKQIFPVLDCK 179
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 180 DDLRKI------SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 233
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VAVI
Sbjct: 234 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVHPDGKQASHVSCTVEMCSVTTPYEVAVI 293
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R P
Sbjct: 294 DEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTP 353
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 ISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 411
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIA
Sbjct: 412 KKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIA 471
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N +DL L E LK+P + + GL P EQ+E+FA L + T
Sbjct: 472 GRAGRFSSQFKEGEVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDAT 531
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 532 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYIFCTAPINKKQPFVC 590
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P +N +L+DLE H VL +YLWLS++F
Sbjct: 591 SSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPRNIKDLMDLEAVHDVLDLYLWLSYRFM- 649
Query: 731 EVFPYA 736
++FP A
Sbjct: 650 DMFPDA 655
>gi|397489940|ref|XP_003815969.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pan
paniscus]
Length = 786
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/548 (43%), Positives = 340/548 (62%), Gaps = 39/548 (7%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 174
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 175 CKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 228
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VA
Sbjct: 229 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVA 288
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 289 VIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVTELMYTTGEEVEVRDYKRL 348
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 349 TPISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 406
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 407 QAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 466
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L +
Sbjct: 467 IAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPD 526
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 527 ATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 585
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 586 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRF 645
Query: 729 KEEVFPYA 736
++FP A
Sbjct: 646 M-DMFPDA 652
>gi|384254154|gb|EIE27628.1| hypothetical protein COCSUDRAFT_11521 [Coccomyxa subellipsoidea
C-169]
Length = 574
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/488 (45%), Positives = 308/488 (63%), Gaps = 5/488 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DLT P +W+P AR+M+R+II H GPTNSGKT+ AL A G+YC PLRLLA EV +K
Sbjct: 54 DLTCPASWYPAARMMRRRIIAHMGPTNSGKTHAALLELKAAASGVYCGPLRLLAWEVAEK 113
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+NA V C+L+TGQE++ VP ++H ACTVEM S +VAV+DE+QM+ D RG+A+TR
Sbjct: 114 LNADNVPCNLITGQERRTVPGASHAACTVEMASVTRGVEVAVVDEVQMLGDGSRGHAFTR 173
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
ALLGL A +HLCGD + L ++R++ ++ GD L + YER PLV ++ L L++VR
Sbjct: 174 ALLGLPAATLHLCGDAAALPLLRQLVADAGDTLEVRTYERLLPLVPQSAALT-SLKSVRR 232
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GDCVVAFSRR++ +K I+ H H C++YGALP E R QQA LFN F+V+ ASD
Sbjct: 233 GDCVVAFSRRDVHAIKRVIDTHGAHQACIVYGALPAEARTQQATLFNAPRTGFNVMAASD 292
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577
AVGMGLNLNIRRV+F S+ K++G P+ +VKQIAGRAGR GS Y G T LN D
Sbjct: 293 AVGMGLNLNIRRVIFSSMEKFDGTSFRPLTPPEVKQIAGRAGRFGSRYSCGQVTCLNDAD 352
Query: 578 LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
+ YL CL +++ LFP ++Q+ LFA Q + LE+F + L +F
Sbjct: 353 MAYLHACLGAENPALERACLFPRYQQLALFAEQHPDLNLPDALEQFADRATLSDHFFFSD 412
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG- 696
++ + K+A ML + L L D + F +P + DP LL FA++YS+ VS A+
Sbjct: 413 YEAMHKLALMLRHLP-LPLRDAYTFAISPADPDDPIVSSALLSFATAYSQRGTVSAALAQ 471
Query: 697 -MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLT 755
+P A+N+AEL LE + VL +Y+WLSH+ E+ FP A +A L+ ++L
Sbjct: 472 SVPVRPARNEAELASLEAAYAVLDLYVWLSHRL-EDGFPGRTAAMQQRAAVAGLVEEALP 530
Query: 756 NANWKPES 763
PE+
Sbjct: 531 RILADPEA 538
>gi|114630826|ref|XP_521497.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pan
troglodytes]
gi|410215456|gb|JAA04947.1| suppressor of var1, 3-like 1 [Pan troglodytes]
gi|410255430|gb|JAA15682.1| suppressor of var1, 3-like 1 [Pan troglodytes]
gi|410336055|gb|JAA36974.1| suppressor of var1, 3-like 1 [Pan troglodytes]
Length = 786
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/548 (43%), Positives = 340/548 (62%), Gaps = 39/548 (7%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 174
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 175 CTDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 228
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VA
Sbjct: 229 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVA 288
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 289 VIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVTELMYTTGEEVEVRDYKRL 348
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 349 TPISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 406
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 407 QAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 466
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L +
Sbjct: 467 IAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPD 526
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 527 ATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 585
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 586 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRF 645
Query: 729 KEEVFPYA 736
++FP A
Sbjct: 646 M-DMFPDA 652
>gi|395820606|ref|XP_003783654.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Otolemur garnettii]
Length = 785
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/544 (43%), Positives = 337/544 (61%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHVILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 179
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 180 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 233
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 234 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVDPNGKQAAHVACTVEMCSITTPYEVAVIDE 293
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ ++YER P+
Sbjct: 294 IQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYERLTPIS 353
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 411
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGR 557
FND ++ +LVA+DA+GMGLNL+I+R++FYSL K + +I P+ SQ QIAGR
Sbjct: 412 FNDPNDPCKILVATDAIGMGLNLSIKRIIFYSLMKPTVNEKGEREIEPITTSQALQIAGR 471
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT+N DDL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 472 AGRFSSQFKEGEVTTMNRDDLGLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 531
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 532 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 590
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 591 LLQFARQYSRNEPLTFAWLRRYIKWPLVPPKNIKDLMDLEAVHDVLDLYLWLSYRFM-DM 649
Query: 733 FPYA 736
FP A
Sbjct: 650 FPDA 653
>gi|31543667|ref|NP_003162.2| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Homo
sapiens]
gi|74759699|sp|Q8IYB8.1|SUV3_HUMAN RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|23273588|gb|AAH36112.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Homo sapiens]
gi|119574699|gb|EAW54314.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_a [Homo
sapiens]
gi|123980202|gb|ABM81930.1| suppressor of var1, 3-like 1 (S. cerevisiae) [synthetic construct]
gi|123995015|gb|ABM85109.1| suppressor of var1, 3-like 1 (S. cerevisiae) [synthetic construct]
gi|158261855|dbj|BAF83105.1| unnamed protein product [Homo sapiens]
Length = 786
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/548 (43%), Positives = 340/548 (62%), Gaps = 39/548 (7%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 174
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 175 CKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 228
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VA
Sbjct: 229 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVA 288
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 289 VIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRL 348
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 349 TPISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 406
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 407 QAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 466
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L +
Sbjct: 467 IAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPD 526
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 527 ATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 585
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 586 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRF 645
Query: 729 KEEVFPYA 736
++FP A
Sbjct: 646 M-DMFPDA 652
>gi|426255672|ref|XP_004021472.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial [Ovis aries]
Length = 787
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/611 (41%), Positives = 364/611 (59%), Gaps = 52/611 (8%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 179
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR + RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 180 LRKI------SDLRIPPNWYPEARAIHRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 233
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 234 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVDPDGKQAAHVACTVEMCSVTTPYEVAVIDE 293
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+EIHLCG+ + +D+V ++ TG+++ + Y+R P+
Sbjct: 294 IQMIKDPARGWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTGEDVEVRTYKRLTPIS 353
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 411
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIAGR
Sbjct: 412 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEIEPITTSQALQIAGR 471
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT+N +DL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 472 AGRFSSKFKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 531
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 532 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 590
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ + + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 591 LLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFL-DM 649
Query: 733 FPYA-------KKAEAMATD----IAELLGQS-------LTNANWKPESRQAGKPKLHQQ 774
FP A K+ + + D I +L+ S L N + + +SR +G K +
Sbjct: 650 FPDASLVRDLQKELDGIIQDGVHNITKLIKISETHKLLNLQNLSAESQSRLSGAAKSQSR 709
Query: 775 REDGYDRPRSI 785
R G PR++
Sbjct: 710 RNRG---PRAV 717
>gi|194205953|ref|XP_001918024.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Equus
caballus]
Length = 786
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 245/608 (40%), Positives = 360/608 (59%), Gaps = 32/608 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + + V LFP F+ + FP D+
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFTAAHVDDLFPFFLRHAKQIFPVLECKDD 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 179 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVEPDGKQAAHVACTVEMCSVTTPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ + Y+R P+
Sbjct: 293 IQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRTYKRLTPIT 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIAGR
Sbjct: 411 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT+N +DL+ L E L +P + ++ GL P EQ+E+FA L + T
Sbjct: 471 AGRFSSKFKEGEVTTMNREDLNLLREILNRPVDPIRAAGLHPTAEQIEMFAYHLPDTTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA +S+N P++ + + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 590 LLQFARQFSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFI-DM 648
Query: 733 FPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGK-PKLHQQREDGYDRPRSIIKSYEN 791
FP A + ++ ++ + N + + K L + R +KS
Sbjct: 649 FPDASFVRDLQKELDGIIQDGVHNITKLIKISETHKLLNLESLSTESQSRLSGALKSQAR 708
Query: 792 RKRQEKTS 799
R R KTS
Sbjct: 709 RTRSTKTS 716
>gi|452824358|gb|EME31361.1| ATP-dependent RNA helicase (mitochondrial) [Galdieria sulphuraria]
Length = 700
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/525 (41%), Positives = 323/525 (61%), Gaps = 11/525 (2%)
Query: 242 GPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCG 301
G D PI ++ +++P ++ +++ D + P W+P AR +KR+II H G
Sbjct: 159 GEGDKVTMACLPIIAKYLEDKYPKQVHAHHRILKVVDFSHPEDWYPLAREIKRRIILHIG 218
Query: 302 PTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-----LGVYCSLLTGQEKKLV 356
PTNSGKT+ AL+ A+ GIYC PLRLLA E+ +++N V C LLTGQE+ +
Sbjct: 219 PTNSGKTHAALEALRAAQSGIYCGPLRLLAWEIHERLNKGDESHQCVPCDLLTGQEQTDI 278
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL 416
P + HI+CT+EM + V VIDEIQ++ D R +AWTRALLGL +E+HLCGDPS
Sbjct: 279 PDAQHISCTIEMAPVHRRFQVGVIDEIQLLGDNERAWAWTRALLGLAVEELHLCGDPSSE 338
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++VRK+ + T D L Q+YER L VE L L+ +++GDC+VAFS+ ++F+ K+ I
Sbjct: 339 NIVRKLINRTQDSLSVQYYERLSSLTVEEDRLTS-LQQLQAGDCLVAFSKADLFKWKVDI 397
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
E+ T C VIYG LPPE RRQQ+ LFN + +LVA+DA+GMGLNLNIRRV+F SL
Sbjct: 398 ERETGLKCSVIYGGLPPEVRRQQSMLFNHSNRSDRILVATDAIGMGLNLNIRRVIFSSLL 457
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
K++G ++ + SQV+QI GRAGR GS++PDGL T +N +DL+Y+ E + V + G
Sbjct: 458 KFDGKEVCSLSPSQVRQIGGRAGRFGSLFPDGLITAVNQEDLEYIRETFSKKLAPVPQAG 517
Query: 597 LFPFFEQVELFAGQ--LSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGL 654
LFP ++V+LFA + S +F + ++ R+DG++FLC D +K A ++E + L
Sbjct: 518 LFPSADKVQLFAEEKAASRSSFSMIWDEMANLARVDGTFFLCSFDDVKARAQVIEDLP-L 576
Query: 655 SLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKG-SAKNDAELLDLET 713
S+E ++ C PV++ PK F+ + V + M + A+N ++ DLE+
Sbjct: 577 SIETKYTLCMCPVDMGIPKQSVAFAEFSRELAFEGCVRLTKAMRQVYPAENWKDMNDLES 636
Query: 714 KHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
+++L MYLWL+ +F+ + F + A + T +L L + N
Sbjct: 637 TYKILDMYLWLAQRFR-DAFVDIENATMLRTKCCRVLQNCLNSRN 680
>gi|403273843|ref|XP_003928708.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 786
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/566 (42%), Positives = 345/566 (60%), Gaps = 35/566 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G + V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAH--VDDLFPFFLRHAKQIFPVLECK 177
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 178 DDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 231
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V ++H+ACTVEM S Y+VAVI
Sbjct: 232 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPDGKQASHVACTVEMCSVTTPYEVAVI 291
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+EIHLCG+P+ +D+V ++ TG+E+ + Y+R P
Sbjct: 292 DEIQMIRDPARGWAWTRALLGLCAEEIHLCGEPAAIDLVTELMFTTGEEVEVRDYKRLTP 351
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V +E VIYG+LPP + QA
Sbjct: 352 ISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQVEIR-GLESAVIYGSLPPGAKLAQA 409
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIA
Sbjct: 410 KKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIA 469
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N +DL L E L +P + ++ GL P EQ+E+FA L + T
Sbjct: 470 GRAGRFSSQFKEGEVTTMNREDLSLLKEILNRPVDPIRAAGLHPTAEQIEMFAYHLPDTT 529
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 530 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVC 588
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 589 SSLLQFARQYSRNEPLTFAWLRRHIKWPLLPPKNIKDLVDLEAIHDVLDLYLWLSYRFM- 647
Query: 731 EVFPYAKKAEAMATDIAELLGQSLTN 756
++FP A + ++ ++ + N
Sbjct: 648 DMFPDASVIRDLQKELDAIIQDGVHN 673
>gi|332639894|pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 431 bits (1107), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/568 (41%), Positives = 347/568 (61%), Gaps = 39/568 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 74 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 129
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 130 CKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 183
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VA
Sbjct: 184 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVA 243
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 244 VIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRL 303
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 304 TPISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 361
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 362 QAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L +
Sbjct: 422 IAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPD 481
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 482 ATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 540
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 541 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRF 600
Query: 729 KEEVFPYAKKAEAMATDIAELLGQSLTN 756
++FP A + ++ ++ + N
Sbjct: 601 M-DMFPDASLIRDLQKELDGIIQDGVHN 627
>gi|440896794|gb|ELR48623.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Bos grunniens
mutus]
Length = 789
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/566 (41%), Positives = 342/566 (60%), Gaps = 33/566 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV +++ V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAGKSHVDDLFPFFLRHAKQIFPVLECK 179
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR + RKII+H GPTNSGKTY+A+Q+++ AK G+YC
Sbjct: 180 DDLRKI------SDLRIPPNWYPEARAIHRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYC 233
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVI
Sbjct: 234 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVSVDPDGKQAAHVACTVEMCSVTTPYEVAVI 293
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+EIHLCG+ + +D+V ++ TG+++ + Y+R P
Sbjct: 294 DEIQMIKDPARGWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTGEDVEVRTYKRLTP 353
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 ISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 411
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIA
Sbjct: 412 KKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEIEPITTSQALQIA 471
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N +DL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 472 GRAGRFSSKFKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTT 531
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 532 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVC 590
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ + + P KN +L+DLE H VL +YLWLS++F
Sbjct: 591 SSLLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFL- 649
Query: 731 EVFPYAKKAEAMATDIAELLGQSLTN 756
++FP A + ++ ++ + N
Sbjct: 650 DMFPDASLVRELQKELDGIIQDGVHN 675
>gi|417404612|gb|JAA49050.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Desmodus rotundus]
Length = 786
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/544 (43%), Positives = 340/544 (62%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 120 LFHQAFISFRNYIMQSQALDVDVHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 179
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 180 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 233
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF----SNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 234 LKLLAHEIFEKSNADGVPCDLVTGEERVTVDPDGRQAAHVACTVEMCSVTTPYEVAVIDE 293
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ ++Y+R P+
Sbjct: 294 IQMIKDPARGWAWTRALLGLCAEEVHLCGEAAAIDLVTELLYMTGEEVEVRNYKRLTPIC 353
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V + L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 VLDQA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 411
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ QIAGR
Sbjct: 412 FNDPEDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGR 471
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S Y +G TT+N +DL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 472 AGRFSSKYKEGEVTTMNREDLRLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 531
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 532 NLIDIFVDFSQVDGHYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 590
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 591 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFI-DM 649
Query: 733 FPYA 736
FP A
Sbjct: 650 FPDA 653
>gi|301755872|ref|XP_002913774.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Ailuropoda melanoleuca]
gi|281346957|gb|EFB22541.1| hypothetical protein PANDA_001610 [Ailuropoda melanoleuca]
Length = 790
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/544 (43%), Positives = 337/544 (61%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 123 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 182
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 183 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 236
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF----SNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ + + H+ACTVEM S Y+VAVIDE
Sbjct: 237 LKLLAHEIFEKSNAAGVPCDLVTGEERVTIDADGKQAAHVACTVEMCSVTTPYEVAVIDE 296
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ ++Y+R P+
Sbjct: 297 IQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYKRLTPIS 356
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 357 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 414
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K G+K I P+ SQ QIAGR
Sbjct: 415 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEIEPITTSQALQIAGR 474
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S Y +G TT+N +DL L E L + + +K GL P EQ+E+FA L + T
Sbjct: 475 AGRFSSKYKEGEVTTMNREDLSLLKEILNRRVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 534
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 535 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 593
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ + + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 594 LLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDIYLWLSYRFI-DM 652
Query: 733 FPYA 736
FP A
Sbjct: 653 FPDA 656
>gi|383421101|gb|AFH33764.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Macaca
mulatta]
gi|384949046|gb|AFI38128.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Macaca
mulatta]
Length = 787
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/546 (43%), Positives = 339/546 (62%), Gaps = 35/546 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G + V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAH--VDDLFPFFLRHAKQIFPVLDCK 177
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 178 DDLRKI------SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 231
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VAVI
Sbjct: 232 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVHPDGKQASHVSCTVEMCSVTTPYEVAVI 291
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R P
Sbjct: 292 DEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTP 351
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 352 ISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 409
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIA
Sbjct: 410 KKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIA 469
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N +DL L E LK+P + + GL P EQ+E+FA L + T
Sbjct: 470 GRAGRFSSQFKEGEVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDAT 529
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 530 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYIFCTAPINKKQPFVC 588
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P +N +L+DLE H VL +YLWLS++F
Sbjct: 589 SSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPRNIKDLMDLEAVHDVLDLYLWLSYRFM- 647
Query: 731 EVFPYA 736
++FP A
Sbjct: 648 DMFPDA 653
>gi|60223057|ref|NP_001012480.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Rattus
norvegicus]
gi|81909565|sp|Q5EBA1.1|SUV3_RAT RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|59808213|gb|AAH89883.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Rattus norvegicus]
Length = 776
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 235/564 (41%), Positives = 346/564 (61%), Gaps = 31/564 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV ++V + S V LFP F+ + FP D+
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL +P W+P AR ++RKII+H GPTNSGKTY+A+QR++ A G+YC P
Sbjct: 179 LRQI------SDLRRPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H++CTVEM + Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ Q YER P+
Sbjct: 293 IQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTGEEVEVQKYERLTPIS 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V + L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 VLDRA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQARK 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIAGR
Sbjct: 411 FNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT++ DDL L E L +P + ++ GL P EQ+E+FA L T
Sbjct: 471 AGRFSSHFKEGEVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 NLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H V +YLWLS++F ++
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFI-DM 648
Query: 733 FPYAKKAEAMATDIAELLGQSLTN 756
FP + ++ ++ ++ + + N
Sbjct: 649 FPDSSFVRSLQKELDVIIQEGVHN 672
>gi|194042314|ref|XP_001928933.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Sus
scrofa]
Length = 789
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 235/544 (43%), Positives = 338/544 (62%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 122 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 181
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 182 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 235
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 236 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVEPDGKQAAHVACTVEMCSVTTPYEVAVIDE 295
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A EIHLCG+ + +D+V ++ TG+++ + Y+R P+
Sbjct: 296 IQMIKDPARGWAWTRALLGLCAKEIHLCGESAAIDLVTELMYTTGEDVEVRTYKRLTPIS 355
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 356 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 413
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G++ I P+ SQ QIAGR
Sbjct: 414 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEREIEPITTSQALQIAGR 473
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT++ +DL+ L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 474 AGRFSSKFKEGEVTTMHREDLNLLKEILSRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 533
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 534 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 592
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ + + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 593 LLQFARQYSRNEPLTFSWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFI-DM 651
Query: 733 FPYA 736
FP A
Sbjct: 652 FPDA 655
>gi|109089488|ref|XP_001110593.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Macaca mulatta]
Length = 787
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/546 (43%), Positives = 339/546 (62%), Gaps = 35/546 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G + V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAH--VDDLFPFFLRHAKQIFPVLDCK 177
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 178 DDLRKI------SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 231
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VAVI
Sbjct: 232 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVHPDGKQASHVSCTVEMCSVTTPYEVAVI 291
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R P
Sbjct: 292 DEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTP 351
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 352 ISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 409
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIA
Sbjct: 410 KKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIA 469
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N +DL L E LK+P + + GL P EQ+E+FA L + T
Sbjct: 470 GRAGRFSSQFKEGEVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDAT 529
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 530 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYIFCTAPINKKQPFVC 588
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P +N +L+DLE H VL +YLWLS++F
Sbjct: 589 SSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPRNIKDLMDLEAVHDVLDLYLWLSYRFM- 647
Query: 731 EVFPYA 736
++FP A
Sbjct: 648 DMFPDA 653
>gi|344275103|ref|XP_003409353.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Loxodonta africana]
Length = 787
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 244/609 (40%), Positives = 359/609 (58%), Gaps = 36/609 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G + V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAH--VDDLFPFFLRHAKQIFPVLECK 177
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC
Sbjct: 178 DDLRKI------SDLRIPPNWYPEARAIRRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYC 231
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K N GV C L+TG+E+ + + H+ACTVEM S Y+VAVI
Sbjct: 232 GPLKLLAHEIFEKSNIAGVPCDLVTGEERVTIEPDGKQAAHVACTVEMCSVTTPYEVAVI 291
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ Q+Y R P
Sbjct: 292 DEIQMIKDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVQNYNRLTP 351
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N++ GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 352 ISV-LDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 409
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIA
Sbjct: 410 KKFNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIA 469
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT++ +DL+ L E L +P E ++ GL P EQ+E+FA L + T
Sbjct: 470 GRAGRFSSKFKEGEVTTMHREDLNLLKEILNRPVEPIRAAGLHPTAEQIEMFAYHLPDTT 529
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 530 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFIC 588
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P KN +L+DLE H +L +YLWLS++F
Sbjct: 589 SSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLVDLEAVHDILDLYLWLSYRFM- 647
Query: 731 EVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGK-PKLHQQREDGYDRPRSIIKSY 789
++FP A + ++ ++ + + N ++ + + L R R +K
Sbjct: 648 DMFPDAGLIRDLQKELDGIIQEGVHNITKLIKTSEPQRLLHLESLRAGSQSRLSGTLKGQ 707
Query: 790 ENRKRQEKT 798
R R KT
Sbjct: 708 TRRTRGTKT 716
>gi|328771880|gb|EGF81919.1| hypothetical protein BATDEDRAFT_10090, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 454
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/454 (45%), Positives = 292/454 (64%), Gaps = 7/454 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
+DL P +P AR MKRKII H GPTNSGKTY AL+R+ IYC PLRLLA EV+
Sbjct: 1 SDLRTPAELYPQARAMKRKIIMHIGPTNSGKTYAALERYKAVDSAIYCGPLRLLAQEVYQ 60
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++NA G+ C+LLTG+E+++ + +CTVEM + +DVAV+DEIQ++ D RG+AWT
Sbjct: 61 RMNAAGIACNLLTGEERRVSDGVDKWSCTVEMALVNREFDVAVVDEIQLIGDQQRGWAWT 120
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
ALL L A E+HLCG+ + LD+VRK+C TGD L YER L V K+L G+ ++
Sbjct: 121 HALLALQAKEVHLCGEGTTLDIVRKLCKTTGDTLEINEYERLTSLTVAQKSLEGNFNQIK 180
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GD ++AFSR+ +F K +E +T + +IYG LPPE+R QA LFND +++ VLVAS
Sbjct: 181 PGDAIIAFSRKNVFNAKQFVELNTPYKAAIIYGGLPPESRADQAKLFNDPESDRQVLVAS 240
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNIRR+VFY++ K+NG KIIP+ SQ KQIAGRAGR G+ + +G T L
Sbjct: 241 DAIGMGLNLNIRRIVFYTMQKFNGTKIIPLTVSQTKQIAGRAGRFGTQWENGQVTCLETK 300
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
D+ L +K + VG+ P EQVE F+ L N T+ LL+KF + +LDG+YF+C
Sbjct: 301 DMALLHASMKMTAPRIMSVGITPTVEQVEQFSNSLPNDTYATLLDKFEDLAQLDGNYFMC 360
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
DH + +A +++ + L++ DR++F +P N +P +++FA ++S +S+
Sbjct: 361 NLDHHRAIAKLIQTIP-LNIRDRYHFVQSPCNPEEPFIKAAIVKFARAHSMGEELSLDQV 419
Query: 697 MPKGSAKND------AELLDLETKHQVLSMYLWL 724
M D +L LE KH+V +YLWL
Sbjct: 420 MLSDEEYIDHSDSPTTKLNALEVKHRVTILYLWL 453
>gi|221042840|dbj|BAH13097.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/505 (44%), Positives = 323/505 (63%), Gaps = 29/505 (5%)
Query: 251 LFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
LFP F+ + FP D++++ +DL P W+P AR M+RKII+H GPTNS
Sbjct: 27 LFPFFLRHAKQIFPVLDCKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNS 80
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNH 361
GKTY+A+Q++ AK G+YC P +LLA E+F+K NA GV C L+TG+E+ V ++H
Sbjct: 81 GKTYHAIQKYFSAKSGVYCGPPKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASH 140
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
++CTVEM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V +
Sbjct: 141 VSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVME 200
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+ TG+E+ + Y+R P+ V L L N+R GDC+V FS+ +I+ V IE
Sbjct: 201 LMYTTGEEVEVRDYKRLTPISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-G 258
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN-- 539
VIYG+LPP T+ QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K +
Sbjct: 259 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSIN 318
Query: 540 --GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
G++ + P+ SQ QIAGRAGR S + +G TT+N +DL L E LK+P + ++ G
Sbjct: 319 EKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAG 378
Query: 597 LFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL 656
L P EQ+E+FA L + T L++ F + ++DG YF+C D K A +++ + LSL
Sbjct: 379 LHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSL 437
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDL 711
R+ FC AP+N + P LL+FA YS+N P++ A + P KN +L+DL
Sbjct: 438 RVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDL 497
Query: 712 ETKHQVLSMYLWLSHQFKEEVFPYA 736
E H VL +YLWLS++F ++FP A
Sbjct: 498 EAVHDVLDLYLWLSYRFM-DMFPDA 521
>gi|149038689|gb|EDL92978.1| suppressor of var1, 3-like 1 (S. cerevisiae) [Rattus norvegicus]
Length = 632
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 225/525 (42%), Positives = 330/525 (62%), Gaps = 29/525 (5%)
Query: 251 LFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
LFP F+ + FP D++++ +DL +P W+P AR ++RKII+H GPTNS
Sbjct: 14 LFPFFLRHAKQIFPVLECKDDLRQI------SDLRRPPNWYPEARAIQRKIIFHSGPTNS 67
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNH 361
GKTY+A+QR++ A G+YC PL+LLA E+F+K NA GV C L+TG+E+ V + H
Sbjct: 68 GKTYHAIQRYLSATSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERLTVEPEGKQATH 127
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
++CTVEM + Y+VAVIDEIQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V +
Sbjct: 128 VSCTVEMCNVATPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTE 187
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+ TG+E+ Q YER P+ V + L L N+R GDC+V FS+ +I+ V IE
Sbjct: 188 LLYTTGEEVEVQKYERLTPISVLDRA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-G 245
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN-- 539
VIYG+LPP T+ QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K +
Sbjct: 246 LESAVIYGSLPPGTKLAQARKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSIN 305
Query: 540 --GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
G+K + P+ SQ QIAGRAGR S + +G TT++ DDL L E L +P + ++ G
Sbjct: 306 EKGEKELEPITTSQALQIAGRAGRFSSHFKEGEVTTMHRDDLALLKEILNRPVDPIQAAG 365
Query: 597 LFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL 656
L P EQ+E+FA L T L++ F + ++DG YF+C D K A +++ + LSL
Sbjct: 366 LHPTAEQIEMFAYHLPETTLSNLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIP-LSL 424
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDL 711
R+ FC AP+N + P LL+FA YS+N P++ A + P KN +L+DL
Sbjct: 425 RVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDL 484
Query: 712 ETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
E H V +YLWLS++F ++FP + ++ ++ ++ + + N
Sbjct: 485 EAVHDVFDLYLWLSYRFI-DMFPDSSFVRSLQKELDVIIQEGVHN 528
>gi|332218176|ref|XP_003258235.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial [Nomascus leucogenys]
Length = 781
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/546 (43%), Positives = 337/546 (61%), Gaps = 35/546 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G + V LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAH--VDDLFPFFLRHAKQIFPVLDCK 176
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 177 DDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 230
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+++ V ++H++CTVEM S Y+VAVI
Sbjct: 231 GPLKLLAHEIFEKSNAAGVPCDLVTGEDRVTVQPNGKQASHVSCTVEMCSVTTPYEVAVI 290
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A E+HLCG+P+ +D+V ++ TG+E+ + Y+R P
Sbjct: 291 DEIQMIRDPARGWAWTRALLGLCAKEVHLCGEPAAIDLVTELMYTTGEEVEVRDYKRLTP 350
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 351 ISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 408
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIA
Sbjct: 409 KKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIA 468
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+N DL L E LK+P + ++ GL P EQ+E+FA L + T
Sbjct: 469 GRAGRFSSRFKEGEVTTMNHKDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDAT 528
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C K A +++ + LSL R+ FC AP+N + P
Sbjct: 529 LSNLIDIFVDFSQVDGQYFVCNMADFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVC 587
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 588 SSLLQFARQYSRNEPLTFAWLRRYIRWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFM- 646
Query: 731 EVFPYA 736
++FP A
Sbjct: 647 DMFPDA 652
>gi|2801555|gb|AAB97370.1| putative ATP-dependent mitochondrial RNA helicase [Homo sapiens]
Length = 786
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/548 (43%), Positives = 337/548 (61%), Gaps = 39/548 (7%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 174
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 175 CKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 228
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL LA E+F+K NA GV C L TG+E+ V ++H++CTVEM S Y+VA
Sbjct: 229 YCGPLTSLAHEIFEKSNAAGVPCDLETGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVA 288
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 289 VIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRL 348
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 349 TPISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 406
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 407 QAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 466
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L +
Sbjct: 467 IAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPD 526
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 527 ATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 585
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 586 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRF 645
Query: 729 KEEVFPYA 736
++FP A
Sbjct: 646 M-DMFPDA 652
>gi|431904159|gb|ELK09581.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pteropus alecto]
Length = 785
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/562 (42%), Positives = 341/562 (60%), Gaps = 29/562 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 179
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+ AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 180 LRKI------SDLRIPPNWYQEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 233
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ + + H+ACTVEM S Y+VAVIDE
Sbjct: 234 LKLLAHEIFEKSNAAGVPCDLVTGEERVTIELNGKQAAHVACTVEMCSVTTPYEVAVIDE 293
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A E+HLCG+ + +D+V ++ TG+E+ ++Y+R P+
Sbjct: 294 IQMIKDPARGWAWTRALLGLCAKEVHLCGEAAAIDLVTELMYTTGEEVEVRNYKRLTPIS 353
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 411
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIAGR
Sbjct: 412 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLLKPSVNEKGEKEIEPITTSQALQIAGR 471
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S Y +G TT+N +DL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 472 AGRFSSKYKEGEVTTMNREDLRLLKEILNKPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 531
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 532 NLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 590
Query: 678 LLRFASSYSKNAPVSIA---MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
LL+FA Y + A S M P KN +L+DLE H VL +YLWLS++F ++FP
Sbjct: 591 LLQFARVYRRTALASWLRRYMKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFI-DMFP 649
Query: 735 YAKKAEAMATDIAELLGQSLTN 756
A + ++ ++ + + N
Sbjct: 650 DASLVRDLQKELDGIIQEGVHN 671
>gi|348575908|ref|XP_003473730.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cavia porcellus]
Length = 786
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 235/544 (43%), Positives = 337/544 (61%), Gaps = 31/544 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ DA V LFP F+ + FP ++
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFDAAHVDDLFPFFLRHAKQIFPVLECKED 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 179 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H++CTVEM S Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVEPNGKQAAHVSCTVEMCSVTTPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+EIHLCG+ + +D+V ++ TG+E+ + Y+R P+
Sbjct: 293 IQMIRDPARGWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTGEEVEVRKYKRLTPIS 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 V-LNHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKR 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND + +LVA+DA+GMGLNL+I+R++FYSL K G+K I P+ SQ QIAGR
Sbjct: 411 FNDPSDPCKILVATDAIGMGLNLSIKRIIFYSLLKPTVNEKGEKEIEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT+N +DLD L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 471 AGRFSSQFKEGEVTTMNREDLDLLKEILNRPVDPIKSAGLHPTAEQIEMFAYHLPDTTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG+YF+C K A +++ + LSL R+ FC AP++ + P
Sbjct: 531 NLIDIFVDFSQVDGNYFVCNMADFKFSAELIQHIP-LSLRVRYVFCTAPISKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F ++
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAIHDVLDLYLWLSYRFM-DM 648
Query: 733 FPYA 736
FP A
Sbjct: 649 FPDA 652
>gi|339235253|ref|XP_003379181.1| putative calcium binding EGF domain protein [Trichinella spiralis]
gi|316978157|gb|EFV61170.1| putative calcium binding EGF domain protein [Trichinella spiralis]
Length = 1281
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 244/583 (41%), Positives = 350/583 (60%), Gaps = 22/583 (3%)
Query: 214 FFPTAAGKFRSYFIKKC--PDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFR 271
FF A FR Y + P D+ L + + V LFP+F+ + FP ++
Sbjct: 201 FFLQALASFRRYCQESAVLPVDLHIMLADILQNSRHVDDLFPLFLRHARQVFP-HLECIE 259
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
+ +DL P W+P AR ++R++I+H GPTNSGKTY ALQR++ AK G+YC PL+LLA
Sbjct: 260 ELKNISDLRLPQNWYPEARSIQRRVIFHAGPTNSGKTYQALQRYLAAKSGVYCGPLKLLA 319
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLV---PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
EVF K NA GV C L+TG+E+ L S HI+CTVEM+ T Y+VAVIDEIQMM D
Sbjct: 320 SEVFHKSNAAGVPCDLITGEERCLANGQTCSEHISCTVEMLDTRVHYEVAVIDEIQMMRD 379
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLG+ ADEIH+CG+ + +D+V+++ GDE YER PL + +
Sbjct: 380 LQRGWAWTRALLGVCADEIHVCGELAAVDLVKELLVSLGDEFELHTYERKTPLKI-LDSP 438
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
LG L +++ DC+VAF+R ++F+V +E + +IYG+LPP T+ QA FND D+
Sbjct: 439 LGSLDSIQPYDCIVAFNRNDLFKVTRQVEA-SGRSVAMIYGSLPPGTKLAQARKFNDPDD 497
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKY----NGDK-IIPVPGSQVKQIAGRAGRRGS 563
DVLVA+DA+GMGLNL+IRRV+FYSL K +G+K + P+ SQ QIAGRAGR G+
Sbjct: 498 PCDVLVATDAIGMGLNLSIRRVIFYSLVKVTLNESGEKELEPISTSQALQIAGRAGRFGT 557
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKF 623
+ G TTL ++DL L L +P E + GLFP EQ+E+FA L T LL+ F
Sbjct: 558 FHESGEVTTLRMEDLPALKAILTKPTEPIPAAGLFPTLEQIEMFAYYLPKATLSNLLDIF 617
Query: 624 GENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFA 682
+D S +F+C D +K +A+M+E V L+L+ R+ FC AP++ + P LR+A
Sbjct: 618 VSLSAVDESRFFMCNVDDLKFLADMIEHVP-LTLKVRYIFCMAPISRKKPFVCGMFLRYA 676
Query: 683 SSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAK 737
+S+ P++ +G P + +L+ LE VL YLWL ++F ++FP +
Sbjct: 677 RKFSRGEPLTSDWLARTVGWPFSAPTKIVDLIHLEDVFDVLDTYLWLGYRFT-DMFPETE 735
Query: 738 KAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGYD 780
+ AM ++ L+ +SL N ++ Q QQ +G+D
Sbjct: 736 QVRAMQRELDVLIRESLQNVKRLLKTVQVAG-LFDQQGLNGFD 777
>gi|115455299|ref|NP_001051250.1| Os03g0746500 [Oryza sativa Japonica Group]
gi|108711051|gb|ABF98846.1| Helicase conserved C-terminal domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549721|dbj|BAF13164.1| Os03g0746500 [Oryza sativa Japonica Group]
gi|260800457|gb|ACX50964.1| ATP-dependent RNA helicase [Oryza sativa Japonica Group]
Length = 579
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/504 (43%), Positives = 323/504 (64%), Gaps = 9/504 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PH W+P AR KR + H GPTNSGKT+NAL+R + G+YC PLRLLA EV
Sbjct: 61 TDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQ 120
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C+L+TGQE++ + + H + TVEM Y AVIDEIQM+ RG+++T
Sbjct: 121 RLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRGFSFT 180
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLGL +DE+H+CGDP+V+ ++++I TGD + Q+YER PL V KT LG N++
Sbjct: 181 RALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPL-VPLKTTLGSFSNIK 239
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDCVV FSRR I+ +K IE H C V+YG+LPPETR +QA +FNDQD+ +VLVAS
Sbjct: 240 AGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVLVAS 299
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F +L K++G + +++KQIAGRAGR GS +P G T LN D
Sbjct: 300 DAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNSD 359
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
L L LK P ++++ GLFP F+ + L++ F +LE+F + +L YF+
Sbjct: 360 HLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDYFIA 419
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++++ L L D++ FC +PV+IRD + L++FA +Y+K V +
Sbjct: 420 DCEDMLKVAAIVDELP-LGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEI 478
Query: 697 MPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
G+ K+ +L +LE+ H+VL +Y+WLS + E+ +P + A + + + L+ +
Sbjct: 479 FTPGTLQVPKSHNQLKELESIHKVLELYVWLSFRL-EDSYPDRELAASQKSICSMLIEEY 537
Query: 754 LTNANWKPESRQ--AGKPK-LHQQ 774
L + W+ R+ KPK LHQ+
Sbjct: 538 LERSGWQQNGRKDFLQKPKRLHQE 561
>gi|126343373|ref|XP_001380624.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Monodelphis domestica]
Length = 777
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 239/595 (40%), Positives = 356/595 (59%), Gaps = 32/595 (5%)
Query: 164 PVEVFGELRSTEKGAKINRSDFEV-LREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKF 222
PV+ G + + GA++ R +V +R+V F + F A F
Sbjct: 63 PVKPLGPNAAGDVGAELTRPLNKVEVRKVLDKFYKRKEIQKLGTDYGLDARLFHQAFISF 122
Query: 223 RSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIE 275
R+Y ++ DV ++ + S V LFP F+ + FP D++++
Sbjct: 123 RNYILQSQSLDVDIHITLNDICFSAAHVDDLFPFFMRHAKQMFPMLACKDDLRKI----- 177
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+DL P W+P AR ++RKI++H GPTNSGKTY+A+QR++ AK G+YC PL+LLA E+F
Sbjct: 178 -SDLRLPPNWYPEARSLRRKIVFHAGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIF 236
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+K N GV C L+TG+E+ + + H+ACTVEM + Y+VAVIDEIQM+ D R
Sbjct: 237 EKSNDAGVLCDLVTGEERVIADPNGKPAAHVACTVEMCTVTAPYEVAVIDEIQMIKDPAR 296
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWTRALLGL A+EIHLCG+ + +D+V ++ TG+E+ Q+YER P+ V + L
Sbjct: 297 GWAWTRALLGLCAEEIHLCGEAAAIDIVTELMYTTGEEVEVQNYERLTPITVLNRA-LES 355
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L N++ GDC+V FS+ +I+ V IE VIYG+LPP T+ QA FND ++
Sbjct: 356 LDNLQPGDCIVCFSKNDIYSVSRQIETR-GLESAVIYGSLPPGTKLAQAKKFNDPNDPCK 414
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYP 566
+LVA+DA+GMGLNL+I+R++F SL K + G+K + P+ SQ QI+GRAGR S +
Sbjct: 415 ILVATDAIGMGLNLSIKRIIFNSLIKPSINEKGEKEMEPISTSQALQISGRAGRFSSKFK 474
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
+G TT+ +DL L E L +P E ++ GL P +Q+E+FA L + T L++ F +
Sbjct: 475 EGEVTTMYPEDLKLLKEILNKPVEPIEAAGLHPTADQIEMFAYHLPDTTLANLIDIFVDF 534
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++DG YF+C D K A++++ + LSL R+ FC AP+N + P LL+FA YS
Sbjct: 535 SQVDGQYFVCNMDDFKFSADLIQHIP-LSLRVRYVFCTAPINKKQPFVCSSLLQFARQYS 593
Query: 687 KNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYA 736
+N P++ A P + KN +L++LE H VL +YLWLS++F ++FP A
Sbjct: 594 RNEPLTFAWLRRYTRWPLQAPKNIKDLVELEAIHDVLDLYLWLSYRFV-DMFPDA 647
>gi|357115310|ref|XP_003559433.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Brachypodium distachyon]
Length = 572
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/516 (41%), Positives = 329/516 (63%), Gaps = 9/516 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
D+T PH W+P AR KRK+ H GPTNSGKT+NAL+R + G+YC PLRLLA EV
Sbjct: 54 TDMTDPHMWYPNAREKKRKVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAK 113
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C+L+TGQE++ + + H + TVE+ Y AVIDEIQM+ RG+++T
Sbjct: 114 RLNNADVPCNLITGQEREEIEGAKHSSVTVEIADVTTEYQCAVIDEIQMIGCKTRGFSFT 173
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLGL +DE+H+CGDP+ + +++++ TGD + Q+YER PLV K+ LG N++
Sbjct: 174 RALLGLCSDELHVCGDPAAVPIIQRMLEPTGDVVTVQYYERLSPLV-PLKSTLGSFSNIK 232
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GDC+V FSRREI+++K IE H C V+YG+LPPETR +QA +FND+ +E +VLVAS
Sbjct: 233 EGDCMVTFSRREIYKLKKKIEMEGKHLCSVVYGSLPPETRTKQATMFNDEASELNVLVAS 292
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F +L K++G ++ + ++KQIAGRAGR GS +P G T L+ +
Sbjct: 293 DAIGMGLNLNISRIIFSTLEKFDGVRMRELTVPEIKQIAGRAGRYGSKFPVGEVTCLHAE 352
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L LK P ++++ GLFP F+ + +++ F +LE+F E +L YF+
Sbjct: 353 DLPLLHSSLKLPSPIIERAGLFPTFDLLSVYSRLHGTDFFHPILERFLEKAKLSPDYFIA 412
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++++ L L D++ FC +PV++RD + L++FA +Y+K V +
Sbjct: 413 DCEDMLKVAAIVDELP-LGLYDKYIFCLSPVDVRDDISTQGLIQFAGNYAKKGTVRLKER 471
Query: 697 MPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
G+ K +L +LE+ H+VL +Y+WL ++F E+ FP + A + + + L+ +
Sbjct: 472 FTSGTLRVPKTHNQLKELESVHKVLELYVWLGYRF-EDSFPDRELAASQKSICSMLIEEY 530
Query: 754 LTNANWKPESRQAGKPKLHQQREDGYDRPRSIIKSY 789
L + W+ +Q K LH R+ + S ++ Y
Sbjct: 531 LERSGWQ---QQGQKRFLHSPRKLRQEYDASQLRGY 563
>gi|224111126|ref|XP_002315757.1| predicted protein [Populus trichocarpa]
gi|222864797|gb|EEF01928.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/493 (43%), Positives = 320/493 (64%), Gaps = 8/493 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DLT PH W+P AR RKI H GPTNSGKTY+AL++ + G+YC PLRLLA EV +
Sbjct: 63 DLTCPHAWYPVARRKNRKIFLHVGPTNSGKTYHALKQLESSPSGVYCGPLRLLAWEVAKR 122
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+N V C L+TGQE++ V + H A TVEM Y AV+DEIQM+ RG+++TR
Sbjct: 123 LNKANVPCDLITGQEREEVNGAKHKAVTVEMADVTSNYSCAVVDEIQMLGCMTRGFSFTR 182
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
ALLG+ ADE+HLCGDP+ + ++++I TGD++H Q+YER PLV K L G +N+++
Sbjct: 183 ALLGISADELHLCGDPAAVPLIQEILKPTGDDIHVQYYERLSPLVPSQKPL-GSFKNIQT 241
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GDC+V FSRREI+++K IE+ H C V+YG+LPPETR +QA +FND +EFDVLVASD
Sbjct: 242 GDCIVTFSRREIYKLKGQIERGRKHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVASD 301
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577
A+GMGLNLNI R++F ++ K++G ++ + S+VKQIAGRAGR GS +P G T L+ DD
Sbjct: 302 AIGMGLNLNISRIIFSTMKKFDGVEMRDLTISEVKQIAGRAGRYGSDFPVGEVTCLHADD 361
Query: 578 LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
L L LK P +++ GLFP F+ + +++ +++E F EN +L +YF+
Sbjct: 362 LPLLHSSLKSPSPILECAGLFPTFDLIFMYSRLHPKKGLYRIMEHFLENAKLSENYFIAN 421
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGM 697
+ + KVA +++ V +SL D++ F +PV++R+ + L +FA +Y++ V +
Sbjct: 422 CEEMLKVAAVVD-VLPISLHDKYLFVISPVDMRNEISSQGLTQFAQNYAQKGIVRLKEIF 480
Query: 698 PKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
G+ K ++ L +LE+ H+VL +Y+WLS + E+ FP + A + L+ + L
Sbjct: 481 TPGTLQVPKTESALKELESIHKVLDLYVWLSFRL-EDSFPDRELAASQKAICGLLIEEFL 539
Query: 755 TNANW--KPESRQ 765
W +P++R+
Sbjct: 540 ERFGWQKQPKTRK 552
>gi|449504697|ref|XP_002191074.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Taeniopygia guttata]
Length = 673
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/508 (45%), Positives = 319/508 (62%), Gaps = 29/508 (5%)
Query: 248 VKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
V LFP F+ + FP D + R + +DL P W+P AR ++RKII+H GPTNS
Sbjct: 24 VDDLFPFFLRHAKQIFPMLDCMDDLRKI---SDLRLPPNWYPDARAIQRKIIFHAGPTNS 80
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN----- 360
GKTY+A+QRF+ AK GIYC PL+LLA E+F K N V C L+TG+E+ F+N
Sbjct: 81 GKTYHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNDANVPCDLVTGEERV---FANEDSRQ 137
Query: 361 --HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDV 418
H+ACT+EM ST+ Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+CG+P+ +D+
Sbjct: 138 APHVACTIEMCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEPAAIDL 197
Query: 419 VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK 478
V ++ TG+E+ ++YER PL V L L N+R GDC+V FS+ +I+ + IE
Sbjct: 198 VTELMYTTGEEVEVRNYERLTPLTV-LDYALESLDNLRPGDCIVCFSKNDIYSISRQIEA 256
Query: 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
C VIYG+LPP T+ +QA FND D+ +LVA+DA+GMGLNL IRR++F S+ K
Sbjct: 257 R-GLECAVIYGSLPPGTKLEQAKKFNDPDDPCKILVATDAIGMGLNLCIRRIIFNSIVKP 315
Query: 539 N----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK 593
G+K I + SQ QIAGRAGR GS + G T ++ DDL L E L +P V+
Sbjct: 316 TVNEKGEKEIDSITTSQALQIAGRAGRFGSSFKQGEVTAMHRDDLARLKEILSEPVPPVQ 375
Query: 594 KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG 653
GL P EQ+E+FA L + T L++ F ++DG YF+C D K +A+M++ +
Sbjct: 376 AAGLHPTPEQIEMFAYHLPDATLSNLIDIFVSLSQVDGMYFVCNIDDFKFLADMIQHIP- 434
Query: 654 LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAEL 708
L+L R+ FC AP+N ++P LL+FA +S+N P++ P + KN EL
Sbjct: 435 LNLRSRYVFCTAPLNRKEPFVCTTLLKFARQFSRNEPLTFDWLCRHTKWPLAAPKNIKEL 494
Query: 709 LDLETKHQVLSMYLWLSHQFKEEVFPYA 736
+ LE H V +YLWLS++F ++FP A
Sbjct: 495 VHLEAVHDVFDLYLWLSYRFM-DMFPDA 521
>gi|351700124|gb|EHB03043.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Heterocephalus
glaber]
Length = 786
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/567 (42%), Positives = 345/567 (60%), Gaps = 32/567 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ A V LFP F+ + FP D+
Sbjct: 121 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFHAAHVDDLFPFFLRHAKQIFPVLECKDD 180
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q++ AK G+YC P
Sbjct: 181 LRKI------SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGP 234
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEK-KLVP---FSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ +VP + H++CTVEM S Y+VAVIDE
Sbjct: 235 LKLLAHEIFEKSNAAGVPCDLVTGEERVTVVPDGKQTAHVSCTVEMCSVTTPYEVAVIDE 294
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+EIHLCG+ + +D+V ++ TG+E+ ++Y+R P+
Sbjct: 295 IQMIRDPARGWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTGEEVEVRNYKRLTPIS 354
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 355 VLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 412
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND + +L+A+DA+GMGLNL+I+R++FYSL K G+K I P+ SQ QIAGR
Sbjct: 413 FNDPSDPCKILLATDAIGMGLNLSIKRIIFYSLLKPTINEKGEKEIEPITTSQALQIAGR 472
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK-KVGLFPFFEQVELFAGQLSNYTF 616
AGR S + +G TT+N DL L + L +P + VK K GL P EQ+E+FA L + T
Sbjct: 473 AGRFSSQFKEGEVTTMNHKDLGLLKDILSRPVDPVKVKSGLHPTAEQIEMFAYHLPDTTL 532
Query: 617 CQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY 676
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 533 SNLIDIFVDFSQVDGHYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCS 591
Query: 677 HLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEE 731
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F +
Sbjct: 592 SLLQFARQYSRNEPLTFAWLRRYIKWPLSPPKNIKDLVDLEAVHDVLDLYLWLSYRFM-D 650
Query: 732 VFPYAKKAEAMATDIAELLGQSLTNAN 758
+FP A + ++ ++ + N N
Sbjct: 651 MFPDAILIRDLQKELDGIIQDGVRNIN 677
>gi|63087685|emb|CAI92124.1| SUV3L1 protein [Mus musculus]
Length = 779
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/564 (41%), Positives = 343/564 (60%), Gaps = 31/564 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV ++V + S V LFP F+ + FP D+
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFSAAHVDGLFPFFLRHAKQIFPVLECKDD 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR +RKII+H GPTNSGKTY+A+QR++ A G+YC P
Sbjct: 179 LRKI------SDLRIPPNWYPEARARQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H++CTVEM + Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +++V ++ TG+E+ Q YER P+
Sbjct: 293 IQMIRDPARGWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPIS 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N++ GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 V-LDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQARK 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIAGR
Sbjct: 411 FNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT++ DDL L + L +P + ++ GL P EQ+E+FA L T
Sbjct: 471 AGRFSSHFKEGQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 NLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H V +YLWLS++F ++
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFI-DM 648
Query: 733 FPYAKKAEAMATDIAELLGQSLTN 756
FP + ++ ++ ++ + + N
Sbjct: 649 FPDSSLVRSLQKELDAIIQEGVHN 672
>gi|357480943|ref|XP_003610757.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula]
gi|355512092|gb|AES93715.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula]
Length = 570
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/495 (43%), Positives = 315/495 (63%), Gaps = 7/495 (1%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
E D+T PHTW+P AR +R++ H GPTNSGKTY AL++ + GIYC PLRLLA EV
Sbjct: 60 EITDMTCPHTWYPLARRKRRRVFLHVGPTNSGKTYQALKQLQSSASGIYCGPLRLLAWEV 119
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
++N V C L+TGQE+ V ++H A TVEM Y AVIDEIQM+ RGY+
Sbjct: 120 AKRLNKANVPCDLITGQERDEVEGAHHKAVTVEMADVSTDYKCAVIDEIQMLGCNTRGYS 179
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
+TRALLG+ ADE+HLCGDP+ + ++++I TGDEL Q+YER PLV K L L +
Sbjct: 180 FTRALLGIAADELHLCGDPAAVPLIQEILDITGDELEVQYYERLSPLV-PMKVPLRSLSD 238
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
VR+GDC+V FSRR+I+++K IE+ H C V+YG+LPPETR +QA++FND +EFDVLV
Sbjct: 239 VRNGDCIVTFSRRDIYKLKKRIEREGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLV 298
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
ASDA+GMGLNLNI R++F ++ K++G ++ + ++KQIAGRAGR GS +P G T ++
Sbjct: 299 ASDAIGMGLNLNISRIIFSTMQKFDGFQMRDLTVPEIKQIAGRAGRYGSNFPLGEVTCMS 358
Query: 575 LDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF 634
DDL L L P ++++ GL P +E + +++ F Q+LE F +N +L YF
Sbjct: 359 GDDLPLLHSALDSPSPILERAGLLPSYELLYMYSRLHPQAGFYQVLEHFVDNAKLSEKYF 418
Query: 635 LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA 694
+ D + KVA ++++ L L D++ FC +P ++ D + L +F +Y+K V +
Sbjct: 419 IVNCDQVLKVAAVVDEFP-LELRDKYLFCISPADMDDEISSQGLTQFVENYAKKGLVRLR 477
Query: 695 MGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLG 751
G+ K L DLE+ H+VL +Y+WLS + E+ FP + A++ + L+
Sbjct: 478 EIFTPGTLKVPTTPQALKDLESIHKVLDLYVWLSFRL-EDSFPDHELAKSQKALCSMLIE 536
Query: 752 QSLTNANW-KPESRQ 765
+ L W KP +R+
Sbjct: 537 EFLDRYGWQKPMARR 551
>gi|223995241|ref|XP_002287304.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976420|gb|EED94747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 504
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/506 (43%), Positives = 304/506 (60%), Gaps = 15/506 (2%)
Query: 266 EIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCS 325
+ +++R + E DLT PH W+P AR+ KRKII+H GPTNSGKTY+ALQR +AKKG+Y +
Sbjct: 1 DFEKYRQLEEHTDLTSPHEWYPHARLDKRKIIFHAGPTNSGKTYSALQRLKQAKKGMYLA 60
Query: 326 PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQM 385
PLRLLA E ++ + + G+Y L+TGQE + VPFS H + TVE+ DE +DV VIDEIQM
Sbjct: 61 PLRLLAAECYENLTSDGIYTDLITGQETRSVPFSTHRSSTVELACIDEDFDVVVIDEIQM 120
Query: 386 MSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEA 445
+ D+ RG+AWTRAL+G+ EIH+CG +V KI GD+ + Y RF L V
Sbjct: 121 ICDSFRGFAWTRALMGVRCKEIHVCGGLEAKSIVAKIAQMCGDDFEMKTYTRFGELRVLE 180
Query: 446 KTLL------GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499
+L G NV+ GDCVVAFSR +IF +K IE+ T+ CCVIYGALPP R +Q
Sbjct: 181 NSLAATSTSKGSYSNVQPGDCVVAFSRNDIFAIKREIEQSTHFKCCVIYGALPPAIRAEQ 240
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A FND ++E++VLVASDA+GMGLNL+I+R++F SL K NG+ I+ + S VKQIAGRAG
Sbjct: 241 ARRFNDPNSEYEVLVASDAIGMGLNLSIKRIIFNSLFKNNGESIVQLDHSLVKQIAGRAG 300
Query: 560 RRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY----- 614
RR S YP G TT + D+++L +C+ E ++K G+ P + LF L Y
Sbjct: 301 RRNSPYPHGEVTTRDPFDMEHLRKCMSTEIEPIQKAGIIPTANHIGLFDELLKEYGASKK 360
Query: 615 --TFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP 672
+ + L F E +L G++FLCR V+ L+ V S +F C +PVN P
Sbjct: 361 ERSLHETLRNFSEMAQLRGNFFLCRQKSFANVSKWLKDVDMPSTV-KFTLCMSPVNESCP 419
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
++ L+R+ Y + M A + L +L T H L ++LWL +
Sbjct: 420 RSKRVLMRYVEMYVSGKTPGVHRSMRPREATSFHNLTELCTVHHELELFLWLQSKLPTNA 479
Query: 733 FPYAKKAEAMATDIAELLGQSLTNAN 758
A +A AM D E + + L+ AN
Sbjct: 480 VEQA-RALAMKEDAIEKINEGLSMAN 504
>gi|31088872|ref|NP_852088.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Mus
musculus]
gi|81912937|sp|Q80YD1.1|SUV3_MOUSE RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|29612530|gb|AAH49796.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Mus musculus]
gi|148700153|gb|EDL32100.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 779
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/564 (41%), Positives = 343/564 (60%), Gaps = 31/564 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV ++V + S V LFP F+ + FP D+
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR +RKII+H GPTNSGKTY+A+QR++ A G+YC P
Sbjct: 179 LRKI------SDLRIPPNWYPEARARQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H++CTVEM + Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +++V ++ TG+E+ Q YER P+
Sbjct: 293 IQMIRDPARGWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPIS 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N++ GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 V-LDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQARK 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIAGR
Sbjct: 411 FNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT++ DDL L + L +P + ++ GL P EQ+E+FA L T
Sbjct: 471 AGRFSSHFKEGQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 NLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H V +YLWLS++F ++
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFI-DM 648
Query: 733 FPYAKKAEAMATDIAELLGQSLTN 756
FP + ++ ++ ++ + + N
Sbjct: 649 FPDSSLVRSLQKELDAIIQEGVHN 672
>gi|356538244|ref|XP_003537614.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 565
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/499 (43%), Positives = 319/499 (63%), Gaps = 7/499 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PHTW+P AR R+II H GPTNSGKT++AL++ + G+YC PLRLLA E+
Sbjct: 57 TDLTCPHTWYPQARKKHRRIILHVGPTNSGKTHHALKQLESSASGVYCGPLRLLAWEIAK 116
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C L+TGQE+ V +NH A TVEMV Y AVIDEIQM+ RGY++T
Sbjct: 117 RLNKAQVPCDLITGQERDEVDGANHKAVTVEMVDVSADYQCAVIDEIQMIGCITRGYSFT 176
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLG+ ADE+HLCGDP+ + ++++I TGDE+ Q YER PLV K LG NVR
Sbjct: 177 RALLGIAADELHLCGDPAAVPLIQEIMKITGDEIEVQFYERLSPLV-PLKVPLGSFSNVR 235
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDC+V FSR+EI+++K IEK H C V+YG+LPPETR +QA++FND +EFDVLVAS
Sbjct: 236 NGDCIVTFSRQEIYKLKKRIEKEGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVAS 295
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F ++ K++G ++ + ++KQIAGRAGR GS +P G T ++ +
Sbjct: 296 DAIGMGLNLNISRIIFSTMKKFDGFEVRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDEE 355
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L L P ++++ G+ P F+ + +++ F Q+L F +N +L +YF+
Sbjct: 356 DLPLLHSSLNSPSPILERAGILPTFDLMYMYSRLHPRNGFYQILAHFLDNAKLSENYFIV 415
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++++ L L +++ FC +P ++ D + L +FA +Y+K V +
Sbjct: 416 NCEQLLKVAAVIDELP-LGLHEKYLFCISPADMDDEISSQGLAQFAENYAKKGLVRLREI 474
Query: 697 MPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
GS K A L +LE+ H+VL +Y+WLS + EE FP + A + + L+ +
Sbjct: 475 FTPGSLKVPKTPAALKELESIHKVLDLYVWLSFRL-EESFPDHELAASQKAICSMLIEEF 533
Query: 754 LTNANW-KPESRQAGKPKL 771
L W KP +R+ K+
Sbjct: 534 LERLGWQKPMARRLPSHKM 552
>gi|328776802|ref|XP_624007.3| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Apis mellifera]
Length = 736
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/545 (42%), Positives = 329/545 (60%), Gaps = 36/545 (6%)
Query: 214 FFPTAAGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFL--FPIFVEFCIEEFP----- 264
F +A G FR Y I+ P D+ ++V +DA L +P F+++ + +P
Sbjct: 109 IFASAMGNFRKYCIESNNLPADL--HIVLSDIINDARNILDLYPYFLDYVKKMYPHIECI 166
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
DE+K+ +DL P W+P AR KRKII+H GPTNSGKTY ALQRF+ AK G+YC
Sbjct: 167 DELKKI------SDLRNPSKWYPIARSKKRKIIFHVGPTNSGKTYQALQRFISAKSGVYC 220
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKK----LVPFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA EVF+K N +G C L+TG+E K + +NHI+CTVEM + +YDVAVI
Sbjct: 221 GPLKLLATEVFNKCNFMGTPCDLITGEEHKYAKDVTCPANHISCTVEMANLQNVYDVAVI 280
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQ++ D RG+AWTRALLGL A+EIHLCG+ + + +++ IC T + + + Y+R P
Sbjct: 281 DEIQLICDPLRGWAWTRALLGLPANEIHLCGESAAIPIIQSICLTTSESVEIKEYKRLTP 340
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L +E L L+N+++GDC+V FSR EIF V AIEK H VIYG+LPP T+ QA
Sbjct: 341 LEIENSALYS-LKNIQAGDCIVCFSRNEIFTVSNAIEK-MGHEVAVIYGSLPPGTKLAQA 398
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK-----IIPVPGSQVKQIA 555
FND ++ +LVA++A+GMGLNL+IRR++FYSL + +K I + S QIA
Sbjct: 399 TRFNDPNDPCKILVATNAIGMGLNLHIRRIIFYSLIQPTINKKGEIDISTISVSTALQIA 458
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR G+ + G TT +DL L + L+Q E + + GL P +Q+EL++ L
Sbjct: 459 GRAGRYGTQWSKGFVTTYKPEDLSLLKKLLEQTPEDIHQGGLHPTPDQIELYSYYLPKAA 518
Query: 616 FCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKA 674
L+ F C LD S YF+C D K +A+M++ + L L R+ FC APVN + P
Sbjct: 519 LSNLINIFIALCELDDSLYFICNLDDFKFLADMIQHIP-LPLSTRYLFCCAPVNRKIPLT 577
Query: 675 MYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFK 729
L++A SKN P++I + P + ELL LE + +L +YLWLS++
Sbjct: 578 CTMFLKYARECSKNEPITILWLSNQIQWPPAIPTSLTELLRLEGIYDILDLYLWLSYRI- 636
Query: 730 EEVFP 734
+FP
Sbjct: 637 SNLFP 641
>gi|242008382|ref|XP_002424985.1| ATP-dependent RNA helicase SUV3, putative [Pediculus humanus
corporis]
gi|212508614|gb|EEB12247.1| ATP-dependent RNA helicase SUV3, putative [Pediculus humanus
corporis]
Length = 681
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 234/532 (43%), Positives = 325/532 (61%), Gaps = 32/532 (6%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
+FP F++ FP + + + DLT P W+P AR M RKII+HCGPTNSGKTYN
Sbjct: 144 IFPYFLQHVKSIFP-HLDCMEDLKKIGDLTSPSNWYPEARSMNRKIIFHCGPTNSGKTYN 202
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFS-------NHIA 363
A++ + +AK G+YC PL+LLA+E+F+K N G+ C L+TG+E V +S +HI+
Sbjct: 203 AMESYYQAKSGVYCGPLKLLAVEIFNKANDKGIQCDLVTGEE---VIYSSAEGDQADHIS 259
Query: 364 CTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKIC 423
CTVEM S + YDVAVIDEIQM+ D RG+AWTRALLGL A EIHLCG+ S +D+V I
Sbjct: 260 CTVEMCSLENTYDVAVIDEIQMIKDNQRGWAWTRALLGLKAKEIHLCGEESAVDLVDSIL 319
Query: 424 SETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHH 483
T + L + Y+R L ++A + L+NV GDC+V FS+R+IF V A+EK N +
Sbjct: 320 CTTNENLEVKKYKRLTELKLDAA--IESLKNVSPGDCIVCFSKRDIFNVTEALEKLGN-N 376
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY----N 539
VIYG LPP T+ + N FND +N F++LV++DA+GMGLNL IRRVVFYSL K N
Sbjct: 377 VAVIYGTLPPGTKYAECNKFNDPNNVFNILVSTDAIGMGLNLEIRRVVFYSLEKPVMNDN 436
Query: 540 G-DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
G +I+P+ SQ QIAGRAGR GS Y G TT + DL L + L + E GLF
Sbjct: 437 GIIEIVPISVSQALQIAGRAGRYGSRYEKGYVTTFHKKDLPLLEKILSETPEPAMSAGLF 496
Query: 599 PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLE 657
P +Q+EL++ L T L++ F +D S YF+C + K A+M+E + LSL
Sbjct: 497 PTVDQIELYSFYLPQSTLSNLMDIFINLSTVDDSMYFICNTNDFKIFADMIEHIP-LSLR 555
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLE 712
++ FC APVN ++ + L+FA YS+N+ +S + P S KN EL++LE
Sbjct: 556 VKYIFCSAPVNKKNQFSCSIFLKFAKMYSENSIISFQWLCKTINWPVSSPKNIKELIELE 615
Query: 713 TKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN-----ANW 759
H L +YLWLS++F + FP + + ++ ++ +S+ NW
Sbjct: 616 GVHDSLDLYLWLSYRFP-DYFPDGDSVKKIQKELDLIIQKSIIEKAKLFVNW 666
>gi|354475450|ref|XP_003499942.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Cricetulus griseus]
gi|344237682|gb|EGV93785.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Cricetulus
griseus]
Length = 779
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/564 (41%), Positives = 340/564 (60%), Gaps = 31/564 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV ++V + S V LFP F+ + FP ++
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFSAAHVDDLFPFFLRHAKQIFPVLECKED 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR ++RKI++H GPTNSGKTY+A+QR++ AK G+YC P
Sbjct: 179 LRKI------SDLRIPPNWYPEARAIRRKIVFHSGPTNSGKTYHAIQRYLSAKSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF----SNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E++ V + H++CTVEM S Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERQTVEAEGKQATHVSCTVEMCSVTTPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ YER P+
Sbjct: 293 IQMIRDLGRGWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTGEEVEVHKYERLTPIS 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 VLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQARK 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND + +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIAGR
Sbjct: 411 FNDPSDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT+ +DL L E L + + ++ GL P EQ+E+FA L T
Sbjct: 471 AGRFSSHFKEGEVTTMYREDLALLKEILNRAVDPIQAAGLHPTAEQIEMFAYHLPETTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 NLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H V +YLWLS++F ++
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFI-DM 648
Query: 733 FPYAKKAEAMATDIAELLGQSLTN 756
FP + + ++ ++ + N
Sbjct: 649 FPDSNLVRGLQKELDAIIQDGVHN 672
>gi|340376109|ref|XP_003386576.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Amphimedon queenslandica]
Length = 791
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/492 (43%), Positives = 298/492 (60%), Gaps = 17/492 (3%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADLT P W+P AR MKR + H GPTNSGKT+ AL+ F A GIYC+PLR+LA E++
Sbjct: 247 ADLTSPAQWYPAARAMKRHFVIHAGPTNSGKTHKALEAFYNASSGIYCAPLRMLAQEIYF 306
Query: 337 KVNALGVYCSLLTGQEKKLVP-----FSNHIACTVEMVST--DEMYDVAVIDEIQMMSDA 389
K N GV C L+TG+E+ V SNH +CT+EM ST E +DVA+IDE QM+ D
Sbjct: 307 KSNDQGVECDLITGEERIYVSGSPEKLSNHTSCTIEMASTAIGEEFDVAIIDEAQMVRDT 366
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWTRA+LG+ A EIHLCG+ SV+ ++R I GD + + YER PL+ ++L+
Sbjct: 367 ERGGAWTRAILGVPAKEIHLCGEESVISIIRSIAESVGDTVEVKRYERLTPLIPLKRSLI 426
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
G+ +R GDCV+ FSRR +FEVK IE+ T C ++YG LP RR+QA LFN +
Sbjct: 427 GNYYFIRPGDCVIVFSRRLVFEVKDHIERATGRRCAIVYGGLPSVNRREQAELFNSPTSG 486
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
FD+LVA+DA+GMGLNL+IRR++F+S+SK + + SQ+KQI+GRAGR GS + G+
Sbjct: 487 FDILVATDAIGMGLNLHIRRILFHSVSKVARGNLENLSSSQLKQISGRAGRYGS-FNVGI 545
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
TT D+ Y E K+ + K GL P EQ++LF+ L N +LL F +L
Sbjct: 546 VTTFFNRDMPYFQEAFKKKIADIDKAGLTPTLEQLQLFSKSLPNLKLHELLSVFSMAAKL 605
Query: 630 DGSYFLC--RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
DG YFLC + + ++ +L V L L+D FC PVN+ P +A+ S+
Sbjct: 606 DGRYFLCEDKMQEWRAISEVL-SVYNLDLKDAITFCLCPVNLNVPLLRKMFSIYAAQVSE 664
Query: 688 NAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
PV+ A+ P +N ++ E H+V+ YLWL +F E FP+++K +
Sbjct: 665 KKPVTYEFVKRALKWPFREPQNSSDFFIFEKAHEVMDTYLWLGQRFP-EYFPHSEKISLL 723
Query: 743 ATDIAELLGQSL 754
DI ++G SL
Sbjct: 724 QKDIENIIGSSL 735
>gi|402880625|ref|XP_003903899.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Papio
anubis]
Length = 787
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 232/546 (42%), Positives = 333/546 (60%), Gaps = 35/546 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW----LGPSDDAVKFLFPIFVEFCIEEFP----- 264
F A FR+Y ++ DV ++V G + V LFP F+ + FP
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAH--VDDLFPFFLRHAKQIFPVLDCK 177
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D++++ +DL P W+P AR ++RKII+H GPTNSGKTY+A+Q++ AK G+YC
Sbjct: 178 DDLRKI------SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYC 231
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVI 380
PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VAVI
Sbjct: 232 GPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPDGKQASHVSCTVEMCSVTTPYEVAVI 291
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ + Y+R P
Sbjct: 292 DEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVTELMXXXXXXXXVRDYKRLTP 351
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 352 ISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQA 409
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIA 555
FND + +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIA
Sbjct: 410 KKFNDPSDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSVNEKGEKELEPITTSQALQIA 469
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR S + +G TT+ +DL L E LK+P + + GL P EQ+E+FA L + T
Sbjct: 470 GRAGRFSSQFKEGEVTTMKHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDTT 529
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 530 LSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYIFCTAPINKKQPFVC 588
Query: 676 YHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL+FA YS+N P++ A + P + +N +L+DLE H VL +YLWLS++F
Sbjct: 589 SSLLQFARQYSRNEPLTFAWLRRYIKWPLLAPRNIKDLMDLEAVHDVLDLYLWLSYRFM- 647
Query: 731 EVFPYA 736
++FP A
Sbjct: 648 DMFPDA 653
>gi|115938145|ref|XP_786336.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 863
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 249/635 (39%), Positives = 367/635 (57%), Gaps = 44/635 (6%)
Query: 175 EKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIG--KSFFPTAAGKFRSYFIKKC-- 230
E GA + ++++ + +F S A Q LA G + F + FR Y ++
Sbjct: 117 ELGANLKNKKDDLMKILIKF---SKRPAIQKLAEEEGLDDNLFHQSFTSFRKYIMEVESL 173
Query: 231 -PD---DVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF 286
PD ++ LV G DD +FP F+ + FP + + + +DLT P W+
Sbjct: 174 EPDLHIVLSDILVGAGHIDD----IFPYFIRHARQIFP-ALDCMEDLKKISDLTDPAQWY 228
Query: 287 PFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCS 346
P AR + RKII+H GPTNSGKTY+AL+ + +AK G+YC PL+LLA EV K N G+ C
Sbjct: 229 PEARAIDRKIIFHAGPTNSGKTYHALESYSQAKSGVYCGPLKLLASEVHKKTNERGIMCD 288
Query: 347 LLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
L+TG+E+K +P S+H+ACTVEM S + Y+VAVIDEIQM+ D RG+AWTRALLG
Sbjct: 289 LVTGEERKYAHPDSIP-SSHVACTVEMTSVSQPYEVAVIDEIQMLRDPSRGWAWTRALLG 347
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
+ A EIHLCG+ + +D+V+++ TGDEL + Y+R PL + + L +L NVR GDC+
Sbjct: 348 VNAKEIHLCGEQAAIDLVKQLTLSTGDELEIREYKRLTPLQILDQP-LDNLENVRPGDCI 406
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
VAFS+ +++ + +E C VIYG+LPP + QA FND D+ +LVA+DA+GM
Sbjct: 407 VAFSKNDLYSISRQLEA-MGKECAVIYGSLPPGAKLSQAAKFNDPDDPCKILVATDAIGM 465
Query: 522 GLNLNIRRVVFYSLSK----YNGDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
GLNL+I+RV+F SL + G+K + + SQ QIAGRAGR + + +G TT + D
Sbjct: 466 GLNLSIKRVIFKSLIRPYINEKGEKEMHRLTTSQALQIAGRAGRFRTQFEEGEATTFHGD 525
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L E L P E ++ GL P EQ+ELFA L + T L+E F ++ +YF+C
Sbjct: 526 DLPLLKEILANPVEKIEAGGLHPTAEQIELFAYHLPDATLSNLIEIFINLSIVEKNYFVC 585
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI--- 693
D K +A+M++ V L L R+ FC AP+N + P L+FA YS+N P++
Sbjct: 586 NVDDFKFLADMIQHVP-LHLRARYVFCCAPINRKLPFICTMFLKFARQYSRNQPITFDWF 644
Query: 694 --AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLG 751
++G P KN +L+ LE H V+ +YLWLS++F ++FP + + ++ ++
Sbjct: 645 CRSVGWPLAVPKNIRDLMHLEAVHDVMDLYLWLSYRFM-DMFPDTALIQDVQAELDHIIQ 703
Query: 752 QSLTNAN---WKPESRQAG-----KPKLHQQREDG 778
+ N E+R G P + Q++ G
Sbjct: 704 MGVINITKLIRASETRSNGMTSIPDPDIEQKKSHG 738
>gi|432852834|ref|XP_004067408.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Oryzias latipes]
Length = 779
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 240/625 (38%), Positives = 361/625 (57%), Gaps = 45/625 (7%)
Query: 157 LHLSTRDPVE--VFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSF 214
L LST P E V EL T ++ ++L ++ AA+Q L +
Sbjct: 68 LSLSTEAPAEGSVGAELTQTLDKNEL----LKILNRFYKRKEMQKLAADQGLDARL---- 119
Query: 215 FPTAAGKFRSYFIKKCPDDVAQYLVWL-------GPSDDAVKFLFPIFVEFCIEEFP--D 265
F A FR + ++ P A + L G DD ++P F+ + FP D
Sbjct: 120 FHQAFISFRKHVLEM-PSLSADLHIILSDICFGAGHIDD----IYPYFMRHAKQIFPMLD 174
Query: 266 EIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCS 325
+ R + +DL P W+P AR ++RK+I+H GPTNSGKTY+A+QR++ AK G+YC
Sbjct: 175 CMDDLRKI---SDLRVPANWYPEARAIQRKVIFHAGPTNSGKTYHAIQRYLAAKSGVYCG 231
Query: 326 PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF----SNHIACTVEMVSTDEMYDVAVID 381
PL+LLA E+F+K N GV C L+TG+E+ + + H+ACT+EM S Y+VAVID
Sbjct: 232 PLKLLAHEIFEKSNNAGVPCDLVTGEERTFMDMDGRAAGHVACTIEMCSVTTPYEVAVID 291
Query: 382 EIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL 441
EIQM+ D RG+AWTRALLGL ADEIH+CG+P+ +D +R++ TG+E+ Y+R P
Sbjct: 292 EIQMIRDPSRGWAWTRALLGLCADEIHVCGEPAAVDFIRELMYTTGEEVEVHTYQRLTPF 351
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQAN 501
+ + L N+R GDC+V FS+ +I+ + IE C VIYG+LPP T+ QA
Sbjct: 352 SI-LNHAVESLDNLRPGDCIVCFSKNDIYSISRQIEA-KGLECAVIYGSLPPGTKLSQAK 409
Query: 502 LFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDKII-PVPGSQVKQIAG 556
FND D+ ++LVA+DA+GMGLNL+I+R++F SL K N G+K + + SQ QIAG
Sbjct: 410 KFNDPDDPCNILVATDAIGMGLNLSIKRIIFNSLVKPNVNEKGEKQMETISTSQALQIAG 469
Query: 557 RAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTF 616
RAGR S + +G TT++ DDL L E L + ++ GL P EQ+E+FA L + T
Sbjct: 470 RAGRFSSKFKEGEVTTMHRDDLPVLKEILSHAVDPIETAGLHPTAEQIEMFAYHLPDATL 529
Query: 617 CQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY 676
L++ F ++DG YF+C D K +A+M++ + L+L R+ FC AP+N +
Sbjct: 530 SNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIP-LNLRSRYVFCTAPINKKQSFVCT 588
Query: 677 HLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEE 731
L+FA +S++ P++ + + P + KN +L+ LE H VL +YLWLS++F +
Sbjct: 589 SFLKFARQFSRDEPLTFSWVCRHISWPLAAPKNIKDLVHLEAVHDVLDLYLWLSYRFM-D 647
Query: 732 VFPYAKKAEAMATDIAELLGQSLTN 756
+FP + ++ +++ Q + N
Sbjct: 648 MFPDTASIREIQQELDDIIQQGVRN 672
>gi|30682998|ref|NP_193215.2| ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis
thaliana]
gi|5823579|emb|CAB53782.1| mitochondrial RNA helicase [Arabidopsis thaliana]
gi|22655093|gb|AAM98137.1| RNA helicase like protein [Arabidopsis thaliana]
gi|31711986|gb|AAP68349.1| At4g14790 [Arabidopsis thaliana]
gi|332658099|gb|AEE83499.1| ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis
thaliana]
Length = 571
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/485 (44%), Positives = 308/485 (63%), Gaps = 7/485 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PHTW+P AR KRK+I H GPTNSGKTY+AL+ ++ G+YC PLRLLA EV
Sbjct: 72 TDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEVAK 131
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C L+TGQEK LV + H A TVEM +YD A+IDEIQM+ RG+A+T
Sbjct: 132 RLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQMVGCKQRGFAFT 191
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLG+ ADE+HLCGDP+V+ +V I TGD++ YER PL V K + + +++
Sbjct: 192 RALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPL-VPLKVPVSSVSSIK 250
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDC+V FSR++I+ K IE+ H C V+YG+LPPETR QA FND+ N+FDVLVAS
Sbjct: 251 TGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDETNDFDVLVAS 310
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F +L KY+G + + S++KQIAGRAGR S +P G T L+ +
Sbjct: 311 DAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFPIGEVTCLHKE 370
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L LK P ++++ GLFP F+ + ++ + Q+LE F EN +L +YF+
Sbjct: 371 DLPLLHSSLKSPSPILERAGLFPTFDLLSGYSQAHPTHGLYQILEHFVENAKLSSNYFIS 430
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++++ L L++++ F +PV++ D + L +FA ++SK V +
Sbjct: 431 NVEDMMKVAAIVDELP-LGLQEKYLFVVSPVDVNDEISGQGLAQFAQNFSKAGIVRLREI 489
Query: 697 MPKGSA---KNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
+ K EL +LE+ H+VL +Y+WLS + E+ FP ++ A I LL +
Sbjct: 490 LAPDRVKVPKTPTELKELESIHKVLDLYVWLSLRL-EDSFP-DREVAASQKSICNLLIEQ 547
Query: 754 LTNAN 758
N
Sbjct: 548 FLEGN 552
>gi|297800732|ref|XP_002868250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314086|gb|EFH44509.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 569
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/485 (44%), Positives = 310/485 (63%), Gaps = 7/485 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PHTW+P AR KRK+I H GPTNSGKTY+AL+ ++ G+YC PLRLLA EV
Sbjct: 72 TDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEVAK 131
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C L+TGQEK LV + H A TVEM +YD A+IDEIQM+ RG+A+T
Sbjct: 132 RLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQMVGCTQRGFAFT 191
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLG+ ADE+HLCGDP+V+ +V I TGD++ + YER PL V K + + +++
Sbjct: 192 RALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVRTYERLSPL-VPLKVHVSSVSSIK 250
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDC+V FSR++I+ K IE+ NH C V+YG+LPPETR QA FND+ N+FDVLVAS
Sbjct: 251 TGDCLVTFSRKDIYAYKKIIERAGNHLCSVVYGSLPPETRTAQATRFNDETNDFDVLVAS 310
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F +L K++G + + S++KQIAGRAGR S +P G T L+ +
Sbjct: 311 DAIGMGLNLNISRIIFSTLQKFDGSETRDLTVSEIKQIAGRAGRFRSKFPIGEVTCLHKE 370
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L LK P ++++ GLFP F+ + ++ + Q+LE F EN +L +YF+
Sbjct: 371 DLPLLHSSLKSPSPLLERAGLFPTFDLLSRYSQAHPKHGLYQILEHFVENAKLSSNYFIS 430
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++++ L L++++ F +PV+I D + L +FA ++SK V +
Sbjct: 431 NVEDMMKVAAIVDELP-LGLQEKYLFVVSPVDINDEISGQGLAQFAHNFSKAGVVRLREI 489
Query: 697 MPKGSA---KNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
+ K EL +LE+ H+VL +Y+WLS + E+ FP ++ A I +L +
Sbjct: 490 LAADRVKVPKTPTELKELESIHKVLDLYVWLSLRL-EDSFP-DREVAASQKSICNILIEQ 547
Query: 754 LTNAN 758
N
Sbjct: 548 FLEGN 552
>gi|395501390|ref|XP_003755078.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Sarcophilus harrisii]
Length = 779
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 242/596 (40%), Positives = 354/596 (59%), Gaps = 38/596 (6%)
Query: 164 PVEVFGELRSTEKGAKINR--SDFEVLREVFRFFSNSGWAANQALAVYIG--KSFFPTAA 219
PV+ G + + GA++ R + EV + + +F+ Q L G F A
Sbjct: 65 PVKPLGPSATGDVGAELTRPLNKAEVRKILDKFYKRK---EIQKLGTDYGLDARLFHQAF 121
Query: 220 GKFRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFP-----DEIKRFRA 272
FR++ ++ DV ++ S A V LFP F+ + FP D++++
Sbjct: 122 IGFRNFILQSQSLDVDIHITLNDISFGAAHVDDLFPFFMRHAKQMFPMLACKDDLRKI-- 179
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
+DL P W+P AR ++RKII+H GPTNSGKTY+A+QR++ AK G+YC PL+LLA
Sbjct: 180 ----SDLRLPPNWYPEARSIQRKIIFHSGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAH 235
Query: 333 EVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
E+F+K N GV C L+TG+E+ + + H+ACTVEM S + Y+VAVIDEIQM+ D
Sbjct: 236 EIFEKSNNAGVLCDLVTGEERVVTDPDGKPAAHVACTVEMCSVNSPYEVAVIDEIQMIKD 295
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A EIHLCG+ + +D+V ++ TG+E+ + YER P+ V
Sbjct: 296 PARGWAWTRALLGLCAKEIHLCGEAAAIDIVTELMYTTGEEVEVRKYERLTPITV-LNHA 354
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA FND D+
Sbjct: 355 LESLDNLRPGDCIVCFSKNDIYTVSRQIEAR-GLQSAVIYGSLPPGTKLAQAKKFNDPDD 413
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGS 563
+LVA+DA+GMGLNL+I+R++F SL K + G+K I P+ SQ QI+GRAGR S
Sbjct: 414 PCKILVATDAIGMGLNLSIKRIIFNSLIKPSINEKGEKEIEPISTSQALQISGRAGRFSS 473
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKF 623
+ +G TT+ +DL L E L +P E ++ GL P +Q+E+FA L + T L++ F
Sbjct: 474 KFKEGEVTTMYPEDLKLLKEILNRPVEPIEAAGLHPTADQIEMFAYHLPDTTLANLIDIF 533
Query: 624 GENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS 683
+ ++DG YF+C D K A++++ + LSL R+ F AP+N + P LL+FA
Sbjct: 534 VDFSQVDGQYFVCNMDDFKFSADLIQHIP-LSLRVRYVFGTAPINKKQPFVCSSLLQFAR 592
Query: 684 SYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
YS+N P++ + P KN +L++LE H VL +YLWLS++F ++FP
Sbjct: 593 QYSRNEPLTFSWLRRYARWPLQPPKNIKDLVELEAIHDVLDLYLWLSYRFV-DMFP 647
>gi|242032983|ref|XP_002463886.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor]
gi|241917740|gb|EER90884.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor]
Length = 542
Score = 417 bits (1072), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/497 (42%), Positives = 318/497 (63%), Gaps = 6/497 (1%)
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
A + DLT PH W+P AR KR + H GPTNSGKTY+AL+R + G+YC PLRLLA
Sbjct: 17 AKFDLTDLTHPHIWYPKAREKKRNVFLHVGPTNSGKTYSALKRLEASSSGVYCGPLRLLA 76
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
E+ ++N + V C+L+TGQE+ + + H + TVEM Y AVIDEIQM+ R
Sbjct: 77 REIAQRLNKVNVPCNLITGQERDEIEGAKHSSVTVEMADVTTDYQCAVIDEIQMVGCKSR 136
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
GY++TRALLGL +DE+H+CGDP+ + ++++I TGD + Q+YER PL V K+ LG
Sbjct: 137 GYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSPL-VPLKSPLGS 195
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
N+++GDC+V FSRR I+ +K IE+ H C V+YG+LPPETR +QA +FND ++ D
Sbjct: 196 FSNIKAGDCLVTFSRRGIYTLKKRIEREGKHLCSVVYGSLPPETRTKQATMFNDDTSDLD 255
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTT 571
VLVASDA+GMGLNLNI R++F ++ K++G + +++KQIAGRAGR GS +P G T
Sbjct: 256 VLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGRYGSKFPVGEVT 315
Query: 572 TLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDG 631
++ +DL L LK ++++ GLFP F+ + L++ F +LE+F E +L
Sbjct: 316 CVDAEDLPLLHSSLKSASPIIERAGLFPTFDLLSLYSRLHGTDFFHPVLERFLEKAKLSP 375
Query: 632 SYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV 691
YF+ + + KVA +++ L L D++ FC +PV+IRD ++ L++FA +Y++ V
Sbjct: 376 DYFIADCEDMLKVAAIVDDFP-LGLYDKYLFCISPVDIRDDISVQGLVQFAENYARKGIV 434
Query: 692 SIAMGMPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAE 748
+ G+ K D +L +LE+ H+VL +Y+WLS + ++ FP + A + + +
Sbjct: 435 RLKEIFTPGTLQVPKTDNQLKELESVHKVLELYVWLSFRM-DDSFPDREVAASQKSICSM 493
Query: 749 LLGQSLTNANWKPESRQ 765
L+ + L + W+P+ R+
Sbjct: 494 LIEEYLERSGWRPQGRR 510
>gi|110739278|dbj|BAF01552.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 571
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/485 (44%), Positives = 307/485 (63%), Gaps = 7/485 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PHTW+P AR KRK+I H GPTNSGKTY+AL+ ++ G+YC PLRLLA EV
Sbjct: 72 TDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEVAK 131
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C L+TGQEK LV + H A TVEM +YD A+IDEIQM+ RG+A+T
Sbjct: 132 RLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQMVGCKQRGFAFT 191
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLG+ ADE+HLCGDP+V+ +V I TGD++ YER PL V K + + +++
Sbjct: 192 RALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPL-VPLKVPVSSVSSIK 250
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDC+V FSR++I+ K IE+ H C V+YG+LPPETR QA FND+ N+FDVLVAS
Sbjct: 251 TGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDETNDFDVLVAS 310
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F +L KY+G + + S++KQIAGRAGR S +P G T L+ +
Sbjct: 311 DAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFPIGEVTCLHKE 370
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L LK P ++++ GLFP F+ + ++ + Q+LE F EN +L +YF+
Sbjct: 371 DLPLLHSSLKSPSPILERAGLFPTFDLLSGYSQAHPTHGLYQILEHFVENAKLSSNYFIS 430
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++++ L ++++ F +PV++ D + L +FA ++SK V +
Sbjct: 431 NVEDMMKVAAIVDELP-LGWQEKYLFVVSPVDVNDEISGQGLAQFAQNFSKAGIVRLREI 489
Query: 697 MPKGSA---KNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
+ K EL +LE+ H+VL +Y+WLS + E+ FP ++ A I LL +
Sbjct: 490 LAPDRVKVPKTPTELKELESIHKVLDLYVWLSLRL-EDSFP-DREVAASQKSICNLLIEQ 547
Query: 754 LTNAN 758
N
Sbjct: 548 FLEGN 552
>gi|449432684|ref|XP_004134129.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
gi|449504169|ref|XP_004162271.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 560
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/507 (42%), Positives = 317/507 (62%), Gaps = 6/507 (1%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R+ + DLT PH+W+P AR RKI H GPTNSGKT+NAL+R + G+YC PLRLL
Sbjct: 43 RSNFDFTDLTCPHSWYPNARKKHRKIFLHMGPTNSGKTHNALKRLESSDSGVYCGPLRLL 102
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
A EV ++N + C L+TGQE++ V + H A TVEM Y AVIDEIQM+
Sbjct: 103 AWEVAKRLNNAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSSYSCAVIDEIQMLGCKT 162
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RGY++TRALLGL ADEIHLCGD +V+ ++++I TGD++ Q+YER PL + LG
Sbjct: 163 RGYSFTRALLGLCADEIHLCGDAAVVPLIQEILKVTGDDIEVQYYERLSPL-IPLNIPLG 221
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
N+R GDC+V FSRR I+ K IE+ H C ++YG+LPPETR +QA +FND +EF
Sbjct: 222 SYSNIRKGDCIVTFSRRRIYGYKKEIERQGGHLCSIVYGSLPPETRTRQAMMFNDTTSEF 281
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLT 570
DVLVASDA+GMGLNLNI R++F ++ K++G ++ + ++KQIAGRAGR GS +P G
Sbjct: 282 DVLVASDAIGMGLNLNISRIIFSTMEKFDGFEMRELTVPEIKQIAGRAGRYGSKFPIGEV 341
Query: 571 TTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630
T ++ DDL L LK +++ GLFP FE + L++ + Q+LE F EN +L
Sbjct: 342 TCISGDDLPLLHSSLKSASPTIERAGLFPTFELMYLYSRLHPEHGLRQILEHFVENAKLS 401
Query: 631 GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP 690
+YF+ + + KVA +L+++ LSL D++ FC +P ++ D L +F Y+
Sbjct: 402 ENYFIVDCEVMLKVAAVLDEMP-LSLHDKYLFCISPADMDDEITSQGLTQFVQGYANKGI 460
Query: 691 VSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIA 747
V + +G+ K A L +LE+ H+VL +Y+WLS + EE FP ++A++ + +
Sbjct: 461 VRLREIFKEGTLKVPETPAALKELESIHKVLDLYVWLSFRL-EESFPDRERADSQKSFCS 519
Query: 748 ELLGQSLTNANWKPESRQAGKPKLHQQ 774
L+ + L + + +R+ K + +
Sbjct: 520 MLIEEFLGRSGMQIPTRRKLKSNIRSR 546
>gi|326923432|ref|XP_003207940.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Meleagris gallopavo]
Length = 717
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 229/533 (42%), Positives = 327/533 (61%), Gaps = 23/533 (4%)
Query: 251 LFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
LFP F+ + FP D + R + +DL P W+P AR ++RKII+H GPTNSGKT
Sbjct: 69 LFPFFLRHAKQIFPMLDCMDDLRKI---SDLRLPPNWYPEARAIQRKIIFHAGPTNSGKT 125
Query: 309 YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIAC 364
Y+A+QRF+ AK GIYC PL+LLA E+F K NA V C L+TG+E+ ++HIAC
Sbjct: 126 YHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNAANVPCDLVTGEERVYATEDARQASHIAC 185
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
T+EM ST+ Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+CG+ + +D+V ++
Sbjct: 186 TIEMCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEGAAIDLVTELMY 245
Query: 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHC 484
TG+E+ ++Y+R PL V L L N++ GDC+V FS+ +I+ V IE C
Sbjct: 246 TTGEEVEVRNYKRLTPLTV-LDYALESLDNLQPGDCIVCFSKNDIYSVSRQIEAR-GLEC 303
Query: 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK----YNG 540
VIYG+LPP T+ +QA FND ++ +LVA+DA+GMGLNL I+R++F S+ K G
Sbjct: 304 AVIYGSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKG 363
Query: 541 DK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
+K I + SQ QIAGRAGR GS + G TT++ DDL L E L + VK GL P
Sbjct: 364 EKEIDSITTSQALQIAGRAGRFGSSFKQGEVTTMHRDDLLQLKEILSESVPPVKAAGLHP 423
Query: 600 FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDR 659
EQ+E+FA L + T L++ F ++DG YF+C D K +A+M++ + L+L R
Sbjct: 424 TPEQIEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIP-LNLRSR 482
Query: 660 FNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETK 714
+ FC AP+N ++P LL+FA +S+N P++ P KN EL+ LE
Sbjct: 483 YVFCTAPLNRKEPFVCTTLLKFARQFSRNEPLTFDWLCRHTKWPLAPPKNIKELVHLEAV 542
Query: 715 HQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAG 767
H V +YLWLS++F ++FP A + + +++ + N + Q+G
Sbjct: 543 HDVFDLYLWLSYRFM-DMFPDAALVRDIQKKLDDIIQIGVCNITKLIRASQSG 594
>gi|414872750|tpg|DAA51307.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 577
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/504 (42%), Positives = 320/504 (63%), Gaps = 9/504 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PH W+P AR KR + H GPTNSGKTY+AL+R + G+YC PLRLLA EV
Sbjct: 59 TDLTHPHMWYPKAREKKRNVFLHVGPTNSGKTYSALKRLEASSSGVYCGPLRLLAREVAQ 118
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N + V C+L+TGQE+ + + H + TVEM Y AVIDEIQM+ RGY++T
Sbjct: 119 RLNKVNVPCNLITGQERNEIEGAKHSSVTVEMADMTTNYQCAVIDEIQMVGCKSRGYSFT 178
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLGL +DE+H+CGDP+ + ++++I TGD + Q+YER PL V K+ LG N++
Sbjct: 179 RALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSPL-VPLKSPLGSFSNIK 237
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDC+V+FSRR I+++K IE+ H C V+YG+LPPETR +QA +FND ++ +VLVAS
Sbjct: 238 AGDCLVSFSRRGIYKLKKRIEREGKHLCSVVYGSLPPETRTKQATMFNDDTSDLNVLVAS 297
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F ++ K++G + +++KQIAGRAGR GS +P G T LN
Sbjct: 298 DAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNPQ 357
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L LK ++++ GLFP F+ + L++ F +LE+F E +L YF+
Sbjct: 358 DLPLLHSSLKSASSIIERAGLFPTFDLLSLYSRLHGTDFFHPILERFLEKAKLSPDYFIT 417
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++ + L L D++ FC +PV++ D + L++FA +Y++ V +
Sbjct: 418 DCEDMLKVAAIVDDLP-LGLYDKYLFCMSPVDVSDDISAQGLVQFAENYARKGIVRLKEI 476
Query: 697 MPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
G+ K D +L +LE+ H+VL +Y+WLS + ++ FP + A + + + L+ +
Sbjct: 477 FTPGTLQVPKTDNQLKELESVHKVLELYVWLSFRM-DDSFPDREVAASQKSICSMLIEEY 535
Query: 754 LTNANWKPESRQ---AGKPKLHQQ 774
L W+P+ R+ G KL Q+
Sbjct: 536 LERFGWQPQDRRKVLGGAQKLLQE 559
>gi|340728105|ref|XP_003402370.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUV3
homolog, mitochondrial-like [Bombus terrestris]
Length = 738
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/558 (40%), Positives = 332/558 (59%), Gaps = 22/558 (3%)
Query: 214 FFPTAAGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFR 271
F +A G FR + I K P D+ L + + +FP F+ + +P I+
Sbjct: 106 IFTSAMGDFRKHCITSDKLPADLHIILSDIIQGSGNITDIFPYFLNHAKQMYP-HIECLD 164
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
+ + +DL P W+P AR KRKII+H GPTNSGKTY+AL+RF+ A+ G+YC PL+LLA
Sbjct: 165 ELRKISDLQNPLYWYPIARSKKRKIIFHAGPTNSGKTYHALERFISARSGVYCGPLKLLA 224
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDEIQMMS 387
EVF+K N+ G C L+TG+E + H++C+VEM + +Y+V VIDEIQ++
Sbjct: 225 HEVFNKCNSRGTPCDLITGEEHRYAKSETSPACHVSCSVEMANIQNVYEVGVIDEIQLIR 284
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
D RG+AWTRALLGL ADEIHLCG+ + + +V+ IC TG+ + + Y+R L VE +
Sbjct: 285 DPGRGWAWTRALLGLAADEIHLCGESAAISIVQSICLTTGESVEIKQYKRLTSLEVE-NS 343
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
L L+N++ GDC+V FSR EIF V AIEK H VIYG LPP T+ QA FND +
Sbjct: 344 ALCSLQNIQPGDCIVCFSRNEIFSVTNAIEK-MGHKVAVIYGNLPPGTKIAQAAKFNDVN 402
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRG 562
+ +LVA++A+GMGLNL+IRR++FYS+++ GD + S QIAGRAGR G
Sbjct: 403 DPCKILVATNAIGMGLNLHIRRIIFYSITQPTVSGKGDADTDTISVSSALQIAGRAGRYG 462
Query: 563 SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEK 622
+ +P G TT +D + + L+Q E +++ GL P +Q+EL+A L N L+
Sbjct: 463 TQWPKGFVTTYKPEDXSCIKKLLQQSPEEIEQAGLHPTADQIELYAYYLPNTPLSNLINI 522
Query: 623 FGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
F C+LD + YF+C D K +A+M++ + L L R+ FC AP+N + P L++
Sbjct: 523 FIALCKLDSTLYFICNLDDFKFLADMIQHIP-LPLRTRYVFCCAPINRKMPLTCSMFLKY 581
Query: 682 ASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYA 736
A SKN P +I + P N A+LL LE+ VL +YLWLS++ ++FP A
Sbjct: 582 ARQCSKNEPATILWLRKQINWPPRMPSNVADLLHLESIFDVLDVYLWLSYRM-PDLFPDA 640
Query: 737 KKAEAMATDIAELLGQSL 754
+ ++ +++ Q +
Sbjct: 641 DAVRTLQKEVDKIIEQGI 658
>gi|57529853|ref|NP_001006498.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Gallus
gallus]
gi|82233802|sp|Q5ZJT0.1|SUV3_CHICK RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|53133368|emb|CAG32013.1| hypothetical protein RCJMB04_16a1 [Gallus gallus]
Length = 794
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 254/670 (37%), Positives = 376/670 (56%), Gaps = 57/670 (8%)
Query: 166 EVFGEL-RSTEKGAKI-NRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFR 223
+V EL R +KG + N + F +E+ R + +G A F A FR
Sbjct: 67 DVGAELTRPLDKGEVLKNLNKFYKRKEIQRLGTENGLDAR----------LFHQAFISFR 116
Query: 224 SYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRA 272
Y ++ +++ G DD LFP F+ + FP D++++
Sbjct: 117 KYIMESSSVSADLHIILNDICCGAGHVDD----LFPFFLRHAKQIFPMLDCMDDLRKI-- 170
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
+DL P W+P AR ++RKII+H GPTNSGKTY+A+QRF+ AK GIYC PL+LLA
Sbjct: 171 ----SDLRLPPNWYPEARAIQRKIIFHAGPTNSGKTYHAIQRFLSAKSGIYCGPLKLLAH 226
Query: 333 EVFDKVNALGVYCSLLTGQEK----KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
E+F K NA V C L+TG+E+ + ++HIACT+EM ST+ Y+VAVIDEIQM+ D
Sbjct: 227 EIFQKSNAANVPCDLVTGEERVYASEDAKQASHIACTIEMCSTNTPYEVAVIDEIQMIRD 286
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A+EIH+CG+ + +D+V ++ TG+E+ ++Y+R PL V
Sbjct: 287 PARGWAWTRALLGLCAEEIHVCGEGAAIDLVTELMYTTGEEVEVRNYKRLTPLTV-LDYA 345
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
L L N++ GDC+V FS+ +I+ V IE C VIYG+LPP T+ +QA FND ++
Sbjct: 346 LESLDNLQPGDCIVCFSKNDIYSVSRQIEAR-GLECAVIYGSLPPGTKLEQAKKFNDPND 404
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSK----YNGDK-IIPVPGSQVKQIAGRAGRRGS 563
+LVA+DA+GMGLNL I+R++F S+ K G+K I + SQ QIAGRAGR GS
Sbjct: 405 PCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKGEKEIDSITTSQALQIAGRAGRFGS 464
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKF 623
+ G T ++ DDL L E L + VK GL P EQ+E+FA L + T L++ F
Sbjct: 465 SFKQGEVTAMHRDDLLQLKEILSEAVPPVKAAGLHPTPEQIEMFAYHLPDATLSNLIDIF 524
Query: 624 GENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS 683
++DG YF+C D K +A+M++ + L+L R+ FC AP+N ++P LL+FA
Sbjct: 525 VSLSQVDGLYFVCNIDDFKFLADMIQHIP-LNLRSRYVFCTAPLNRKEPFVCTTLLKFAR 583
Query: 684 SYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKK 738
+S+N P++ P KN EL+ LE H V +YLWLS++F ++FP A
Sbjct: 584 QFSRNEPLTFDWLCRHTKWPLAPPKNIKELVHLEAVHDVFDLYLWLSYRFM-DMFPDAAL 642
Query: 739 AEAMATDIAELLGQSLTNANWKPESRQAG-KPKLHQQREDGYDRPRS-----IIKSYENR 792
+ + +++ + N + Q+G P + +G+ R+ + + +
Sbjct: 643 VRDIQKKLDDIIQIGVCNITKLIRASQSGAAPGAAEVMSEGFPLSRTKRDARTVSDHRDA 702
Query: 793 KRQEKTSLTL 802
K E S+ L
Sbjct: 703 KSAEPLSIAL 712
>gi|332639893|pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/568 (41%), Positives = 338/568 (59%), Gaps = 39/568 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y + DV ++V +DD LFP F+ + FP
Sbjct: 74 LFHQAFISFRNYIXQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 129
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR +RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 130 CKDDLRKI------SDLRIPPNWYPDARAXQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 183
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVE S Y+VA
Sbjct: 184 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEXCSVTTPYEVA 243
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQ + D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 244 VIDEIQXIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVXELXYTTGEEVEVRDYKRL 303
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 304 TPISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 361
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+G GLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 362 QAKKFNDPNDPCKILVATDAIGXGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G TT N +DL L E LK+P + ++ GL P EQ+E FA L +
Sbjct: 422 IAGRAGRFSSRFKEGEVTTXNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEXFAYHLPD 481
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 482 ATLSNLIDIFVDFSQVDGQYFVCNXDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 540
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L DLE H VL +YLWLS++F
Sbjct: 541 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLXDLEAVHDVLDLYLWLSYRF 600
Query: 729 KEEVFPYAKKAEAMATDIAELLGQSLTN 756
+ FP A + ++ ++ + N
Sbjct: 601 XDX-FPDASLIRDLQKELDGIIQDGVHN 627
>gi|47218714|emb|CAG05686.1| unnamed protein product [Tetraodon nigroviridis]
Length = 728
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 234/591 (39%), Positives = 348/591 (58%), Gaps = 30/591 (5%)
Query: 186 EVLREVFRFFSNSGWAANQALAVYIG--KSFFPTAAGKFRSYFIK--KCPDDVAQYLVWL 241
EVL+ + RF+ Q LA G F A FR Y ++ P D+ + +
Sbjct: 43 EVLKALNRFYKRK---EMQKLASDHGLDARLFHQAFISFRKYVLEVTSLPADLHIIISDI 99
Query: 242 GPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYH 299
V ++P F+ + FP D + R + +DL P W+P AR ++RK+I+H
Sbjct: 100 CCGAGHVDDIYPYFMRHAKQIFPMLDCMDDLRKI---SDLRLPAHWYPEARAVQRKVIFH 156
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-- 357
GPTNSGKTY+A+QR++ AK G+YC PL+LLA E+F+K N GV C L+TG+E+ +
Sbjct: 157 AGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIFEKSNTAGVACDLVTGEERIFMDPE 216
Query: 358 --FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV 415
+ H+ACT+EM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+CG+ +
Sbjct: 217 GRSAGHVACTIEMCSVTTPYEVAVIDEIQMIRDPSRGWAWTRALLGLCAEEIHVCGESAA 276
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
++ VR++ TG+E+ Y+R P V + + L N+R GDC+V FS+ +I+ +
Sbjct: 277 VEFVRELMYTTGEEVEVHTYQRLTPFTVLDQA-VESLDNLRPGDCIVCFSKNDIYSISRQ 335
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
IE C VIYG+LPP T+ QA FND D+ +LVA+DA+GMGLNL+I+R++F SL
Sbjct: 336 IEIR-GLECAVIYGSLPPGTKLSQAKKFNDPDDPCKILVATDAIGMGLNLSIKRIIFNSL 394
Query: 536 SKYN----GDKII-PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
K N G+K + + SQ QIAGRAGR S + +G TTL+ DDL L E L +
Sbjct: 395 VKPNINEKGEKQMETISTSQALQIAGRAGRFSSKFKEGEVTTLHRDDLPVLKEILSHSVD 454
Query: 591 VVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650
++ GL P EQ+E+FA L + T L++ F ++DG YF+C D K +A+M++
Sbjct: 455 PIETAGLHPTAEQIEMFAYHLPDATLSNLVDIFVSLSQVDGLYFVCNIDDFKFLADMIQH 514
Query: 651 VQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKND 705
+ L+L R+ FC AP+N + P L+FA +S++ P++ + P + KN
Sbjct: 515 IP-LNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSRDEPLTFDWVCRHVNWPLAAPKNI 573
Query: 706 AELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
+L+ LE H VL +YLWLS++F ++FP + ++ E++ Q + N
Sbjct: 574 KDLVHLEAVHDVLDLYLWLSYRFM-DMFPDTAMVRKIQQELDEVIQQGVRN 623
>gi|281204259|gb|EFA78455.1| Mitochondrial RNA helicase [Polysphondylium pallidum PN500]
Length = 889
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/508 (42%), Positives = 326/508 (64%), Gaps = 12/508 (2%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
E ADL PH WFP AR +KRK + H GPTNSGKT+NAL+ A G+YC PLRLLA E+
Sbjct: 366 EMADLKYPHRWFPEARAIKRKFVLHVGPTNSGKTHNALEALKSADSGVYCGPLRLLAQEI 425
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+D++NA+ V C+LLTGQ+ +V + H+ACT+EM ST+ + DVAVIDE QM++D RG+A
Sbjct: 426 YDRLNAVDVKCNLLTGQQNLVVRDARHLACTIEMASTNRLVDVAVIDEFQMIADLGRGWA 485
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA+LGL A EIHLCGD + + ++ K+ TGD + ++YER PL VE+K+ + R
Sbjct: 486 WTRAVLGLPAREIHLCGDNTAVSLIEKLAKTTGDTIEVRYYERLAPLRVESKS-VDWRRT 544
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+ GDC+++FSRR+I E K IE+ C V+YGALPPETR QA LFN+ D+ +DVLV
Sbjct: 545 LEKGDCIISFSRRDILETKSLIERR-GLKCAVVYGALPPETRANQAQLFNEPDSGYDVLV 603
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
ASDA+GMGLNLNIRRV+F + K++G ++ + S+VKQIAGRAGR S +P+GL T+++
Sbjct: 604 ASDAIGMGLNLNIRRVIFSEIKKFDGKEMRKLVHSEVKQIAGRAGRFRSEFPEGLVTSVS 663
Query: 575 LDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN--YTFCQLLEKFGENCRLDGS 632
++ Y+ E L+ P V ++ G+FP Q+E FA L TF +LLE+F E LD
Sbjct: 664 SINIGYIKEQLELPNVVTERAGIFPQEAQLEQFARHLGKEVRTFSELLERFFECTNLDNL 723
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH--LLRFASSYSKNAP 690
YF+ D KVA +++ ++ L ++ ++ F AP+ +++ ++ +++ + + +
Sbjct: 724 YFMENTDDKIKVARLIDHIK-LPVKTKYAFIMAPLKLKEKESNIEKIYVKYTALFGRGVE 782
Query: 691 VSIAMGMPKGSAKNDAELLD----LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDI 746
V + P +++ +L + LE + +L +YLWL+ +F+ + F A ++ +
Sbjct: 783 VPHMVEEPICVSQDYNDLQNYLGRLEECYAILDLYLWLAQRFQVQ-FSQFDTAYQLSIQV 841
Query: 747 AELLGQSLTNANWKPESRQAGKPKLHQQ 774
+ + +L + SR+ K KL Q
Sbjct: 842 NQNITDTLIKLSNLKISRREEKQKLRNQ 869
>gi|134133261|ref|NP_001077033.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Danio
rerio]
gi|160358711|sp|A4IG62.1|SUV3_DANRE RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|134024870|gb|AAI34946.1| MGC162283 protein [Danio rerio]
Length = 763
Score = 414 bits (1064), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/588 (39%), Positives = 350/588 (59%), Gaps = 40/588 (6%)
Query: 186 EVLREVFRFFSN---SGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVW-- 240
E+L+ + RF+ A++Q L + F A FR Y ++ + +++
Sbjct: 90 ELLKVLNRFYKRKEMQKLASDQGLDARL----FHQAFVSFRKYVLEMNSLNADLHIILND 145
Query: 241 ----LGPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKR 294
G DD +FP F+ + FP D I R + +DL P W+P AR ++R
Sbjct: 146 ICCGAGHIDD----IFPYFMRHAKQIFPMLDCIDDLRKI---SDLRVPANWYPEARAIQR 198
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK 354
KI++H GPTNSGKTY+A++R++EAK G+YC PL+LLA E+++K NA GV C L+TG+E+
Sbjct: 199 KIVFHAGPTNSGKTYHAIKRYLEAKSGVYCGPLKLLAHEIYEKSNAAGVPCDLVTGEERI 258
Query: 355 LV----PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
V S HIA T+EM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+C
Sbjct: 259 FVDPEGKPSGHIASTIEMCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHVC 318
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G+ + +D + ++ TG+E+ +Y+R P + + + L N++ GDC+V FS+ +I+
Sbjct: 319 GEAAAVDFITELMFTTGEEVEVHNYKRLTPFSI-SNHAVESLDNLKPGDCIVCFSKNDIY 377
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ IE C VIYG+LPP T+ QA FND D+ +LVA+DA+GMGLNL+IRR+
Sbjct: 378 SISRQIEIR-GLECAVIYGSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRI 436
Query: 531 VFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+F SL K++ G+K + + SQ QIAGRAGR S++ +G TT++ DDL L E L
Sbjct: 437 IFNSLVKHSLNEKGEKEVDTISTSQALQIAGRAGRFSSVFKEGEVTTMHRDDLPVLKEIL 496
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645
+P + + GL P EQ+E+FA L T L++ F ++DG YF+C D K +A
Sbjct: 497 GKPVDPIATAGLHPTAEQIEMFAYHLPQATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLA 556
Query: 646 NMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKG 700
+M++ + L+L R+ FC AP+N + P L+FA +S++ P++ + P
Sbjct: 557 DMIQHIP-LNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSRDEPLTFNWVCRQVNWPLS 615
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAE 748
KN +L+ LE H VL +YLWLS++F ++FP + + + ++ E
Sbjct: 616 PPKNIKDLVHLEAVHDVLDLYLWLSYRFM-DMFPDSNQIREIQKELDE 662
>gi|160773213|gb|AAI55210.1| MGC162283 protein [Danio rerio]
Length = 718
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/588 (39%), Positives = 349/588 (59%), Gaps = 40/588 (6%)
Query: 186 EVLREVFRFFSN---SGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVW-- 240
E+L+ + RF+ A++Q L F A FR Y ++ + +++
Sbjct: 90 ELLKVLNRFYKRKEMQKLASDQGL----DARLFHQAFVSFRKYVLEMNSLNADLHIILND 145
Query: 241 ----LGPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKR 294
G DD +FP F+ + FP D I R + +DL P W+P AR ++R
Sbjct: 146 ICCGAGHIDD----IFPYFMRHAKQIFPMLDCIDDLRKI---SDLRVPANWYPEARAIQR 198
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK 354
KI++H GPTNSGKTY+A++R++EAK G+YC PL+LLA E+++K NA GV C L+TG+E+
Sbjct: 199 KIVFHAGPTNSGKTYHAIKRYLEAKSGVYCGPLKLLAHEIYEKSNAAGVPCDLVTGEERI 258
Query: 355 LV----PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
V S HIA T+EM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+C
Sbjct: 259 FVDPEGKPSGHIASTIEMCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHVC 318
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G+ + +D + ++ TG+E+ +Y+R P + + + L N++ GDC+V FS+ +I+
Sbjct: 319 GEAAAVDFITELMFTTGEEVEVHNYKRLTPFSI-SNHAVESLDNLKPGDCIVCFSKNDIY 377
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ IE C VIYG+LPP T+ QA FND D+ +LVA+DA+GMGLNL+IRR+
Sbjct: 378 SISRQIEIR-GLECAVIYGSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRI 436
Query: 531 VFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+F SL K++ G+K + + SQ QIAGRAGR S++ +G TT++ DDL L E L
Sbjct: 437 IFNSLVKHSLNEKGEKEVDTISTSQALQIAGRAGRFSSVFKEGEVTTMHRDDLPVLKEIL 496
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645
+P + + GL P EQ+E+FA L T L++ F ++DG YF+C D K +A
Sbjct: 497 GKPVDPIATAGLHPTAEQIEMFAYHLPQATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLA 556
Query: 646 NMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKG 700
+M++ + L+L R+ FC AP+N + P L+FA +S++ P++ + P
Sbjct: 557 DMIQHIP-LNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSRDEPLTFNWVCRQVNWPLS 615
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAE 748
KN +L+ LE H VL +YLWLS++F ++FP + + + ++ E
Sbjct: 616 PPKNIKDLVHLEAVHDVLDLYLWLSYRFM-DMFPDSNQIREIQKELDE 662
>gi|391343726|ref|XP_003746157.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Metaseiulus occidentalis]
Length = 694
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 235/615 (38%), Positives = 360/615 (58%), Gaps = 45/615 (7%)
Query: 160 STRDPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAA 219
S D + V EL GA+I+++ LR+ F A + S F A
Sbjct: 28 SNSDDINVGAEL-----GAEIDKNG---LRKALNEFHKRPEVIELAAENGLDSSLFQRAF 79
Query: 220 GKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRA 272
FR + D ++V L V +FP F+ + FP DE+K+
Sbjct: 80 QSFRQFCETSEKLDAEFHIVCSDLLRGSGHVTDIFPYFLRHAKQVFPHVECMDELKKI-- 137
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
+DL P W+P AR ++RK I+H GPTNSGKTY+A++ F+ A G+YC PL++LA+
Sbjct: 138 ----SDLRLPANWYPEARSVERKFIFHAGPTNSGKTYHAMEAFISASNGVYCGPLKMLAV 193
Query: 333 EVFDKVNALGVYCSLLTGQEKKL----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
EV+ K NA G C L+TG+E++ +P S+H+ACTVEM ST E DVA+IDEIQM+ D
Sbjct: 194 EVYQKTNARGTSCDLVTGEERRRPNGDMP-SSHVACTVEMTSTKEFVDVAIIDEIQMVKD 252
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLG+ A E+HLCG+ + + ++R+I + G+++ ++YER PLVVE K
Sbjct: 253 PQRGWAWTRALLGIPAKEVHLCGEEAAIPLIREILAPLGEQIEVRNYERLTPLVVE-KEA 311
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
L L N++ GDCVV F++ +I+ V + IE+ + C +IYG+L P T+ Q+ FND D+
Sbjct: 312 LRSLSNLQPGDCVVCFNKNDIYTVSLEIER-MDKQCAIIYGSLSPGTKSAQSEKFNDPDH 370
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-------KIIPVPGSQVKQIAGRAGRR 561
+LVA+DA+GMGLNL+IRR++FY+++K N + +++ V SQ QIAGRAGR
Sbjct: 371 PCKILVATDAIGMGLNLSIRRIIFYNVTKPNTNEKGVCEREVLSV--SQALQIAGRAGRF 428
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLE 621
G+ + +G TT+ DL L L E + GL P +Q+ELFA L + L++
Sbjct: 429 GTAWSEGRVTTMKPQDLPILTHLLNSKPETIAAAGLHPTADQIELFAYHLPHANLSNLID 488
Query: 622 KFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
F R++ + YF+C + +K +A++++ V L L R+ FC AP+N + P L+
Sbjct: 489 IFCSLSRMNNAQYFMCNVESLKYLADLIQHV-NLPLRARYVFCCAPINPKMPFVTTVFLK 547
Query: 681 FASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPY 735
+A YS+N PV+ +G P S +N EL+ LE V+ +YLWLS++F +++FP
Sbjct: 548 YARQYSRNEPVTCQRVHEIIGWPLKSPENIVELVHLEAVFDVVDLYLWLSYRF-QDLFPE 606
Query: 736 AKKAEAMATDIAELL 750
++ + ++ E++
Sbjct: 607 QERVRELQIELDEMI 621
>gi|383856403|ref|XP_003703698.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Megachile rotundata]
Length = 736
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/544 (41%), Positives = 327/544 (60%), Gaps = 32/544 (5%)
Query: 213 SFFPTAAGKFRSYFI--KKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----D 265
+ F +A G FR + + K P D+ + + + + +FP F+ + +P +
Sbjct: 102 AIFNSAMGHFRRFCVESKTLPTDLHIIISDISRNAGNITDIFPYFLRHAKQMYPHLDCLE 161
Query: 266 EIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCS 325
E+K+ +DL P W+P AR KRK+I+H GPTNSGKTY AL+RFM AK G+YC
Sbjct: 162 ELKKI------SDLRNPANWYPIARSRKRKLIFHSGPTNSGKTYQALRRFMSAKSGVYCG 215
Query: 326 PLRLLAMEVFDKVNALGVYCSLLTGQE----KKLVPFSNHIACTVEMVSTDEMYDVAVID 381
PL+LLA EVF+K N +G C L+TG+E K +NHI+C+VEMV+ Y+VA+ID
Sbjct: 216 PLKLLAAEVFNKCNQMGTPCDLITGEEHRYAKNASAPANHISCSVEMVNIQNTYEVAIID 275
Query: 382 EIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL 441
EIQ++ D RG+AWTRA LG+ ADEIHLCG+ S + ++ IC G++L + Y+R L
Sbjct: 276 EIQLIRDLTRGWAWTRAFLGIAADEIHLCGESSAIPIIESICLTIGEQLEVKTYKRLTKL 335
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQAN 501
+E L NV++GDC+V F++ +IF V AIEK VIYG+LPP T+ QA
Sbjct: 336 EIE-NIALRSFCNVQAGDCIVCFNKNDIFTVSNAIEK-LGKKVAVIYGSLPPGTKLAQAA 393
Query: 502 LFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAG 556
FND ++ +LVA++A+GMGLNL+IRR++FYSL++ + ++ + S QIAG
Sbjct: 394 RFNDPNDPCKILVATNAIGMGLNLHIRRIIFYSLTQPGLNEKGEIEVSLISVSSALQIAG 453
Query: 557 RAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTF 616
RAGR G+ + G TT +DL+ L + L++ + +++ GL P +Q+EL+A L N
Sbjct: 454 RAGRYGTQWETGFVTTFKYEDLNVLKQLLQKTPDEIEQAGLHPTPDQIELYAYYLPNAPL 513
Query: 617 CQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
L++ F CRLD S YF+C D K VA+M+E + L L ++ FC APVN + P
Sbjct: 514 SNLIDIFIALCRLDDSLYFICNLDDFKFVADMIEHIP-LPLRTKYVFCCAPVNRKVPFTC 572
Query: 676 YHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
LL++A SKN P++I + P N EL+ LE VL +YLWLS++
Sbjct: 573 NMLLKYARQCSKNTPITIQWLCLQIQWPSNVPINLVELVRLEAVFDVLDVYLWLSYRM-P 631
Query: 731 EVFP 734
++FP
Sbjct: 632 DMFP 635
>gi|324504471|gb|ADY41932.1| ATP-dependent RNA helicase SUV3 [Ascaris suum]
Length = 781
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 238/593 (40%), Positives = 346/593 (58%), Gaps = 38/593 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDD--VAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP--DEIKR 269
F TA FR+Y + P D +A L + V LF F+ + +P + I+
Sbjct: 135 LFMTAFRSFRTYCLTAKPLDPAIAVTLSDIVKQGQDVDSLFVYFLSHARKVYPHLESIED 194
Query: 270 FRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
R + +DLT+PH W+P AR + R+II+H GPTNSGKTY AL+RF EAK G+YC PL+L
Sbjct: 195 LRMI---SDLTQPHNWYPEARTIHRRIIFHAGPTNSGKTYEALKRFREAKSGVYCGPLKL 251
Query: 330 LAMEVFDKVNALGVYCSLLTGQEKKLV-----PFSNHIACTVEMVSTDEMYDVAVIDEIQ 384
LA EVF + N GV C ++TG+E++ P S H++ TVEM+ST DVAVIDEIQ
Sbjct: 252 LASEVFFRTNEQGVKCDMVTGEERRYAIDNRHP-SAHLSSTVEMLSTQMHVDVAVIDEIQ 310
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
M+ D RG+AWTRALLG+ ADE+HLCG+ S +++VR++ + G+ + Y+R L +
Sbjct: 311 MLRDEQRGWAWTRALLGVAADEVHLCGEASAINIVRELLNPIGEHVEVHEYKRKTSLSL- 369
Query: 445 AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504
A LG L NV+ GDC+V FSRR IF V +EK VIYG LPP T+ QA FN
Sbjct: 370 APHALGTLDNVQDGDCIVCFSRRAIFSVTKQLEK-IGVKPAVIYGDLPPGTKLSQAGKFN 428
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564
D ++ +VLVA+DA+GMGLNLNIRR++FYSL + ++I P QIAGRAGR G++
Sbjct: 429 DPNDATNVLVATDAIGMGLNLNIRRIIFYSLIRPPNGELI--PNYAALQIAGRAGRFGTV 486
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFG 624
Y +G T+ +D+ L E L QP ++ VG+ P FEQ+E F+ L N +F LL+ F
Sbjct: 487 YEEGKVMTVREEDMGILKEILSQPVSPIESVGIAPTFEQLETFSFHLPNASFINLLDIFV 546
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
C + +F+C + +K +A +++ + L L+ R+ FC APVN + A ++ A
Sbjct: 547 SVCSITDRFFICTVNQMKSLAELIDYIP-LPLKVRYTFCIAPVNPDEKLAASAFVKMARR 605
Query: 685 YSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKA 739
+S ++ +G P + +L+ LE + ++ +YLWLS +F ++FP +
Sbjct: 606 FSSGQALTFDWLCGVIGWPISPPEKLIDLVRLEQVYGIVDVYLWLSLRFP-DMFPDETEV 664
Query: 740 EAM-----------ATDIAELLGQSLTNANWKPESRQ-AGKPKLHQQREDGYD 780
+ T I ELLG + NA E+++ A K K +++ D D
Sbjct: 665 RTLERQLDLVIEDGVTRIIELLG--VDNAKEASEAKKLAEKMKTEKEKADFED 715
>gi|380021234|ref|XP_003694476.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Apis florea]
Length = 725
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 233/586 (39%), Positives = 340/586 (58%), Gaps = 43/586 (7%)
Query: 214 FFPTAAGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F +A FR + I+ + P D+ L + + + ++P F+++ + +P DE
Sbjct: 109 IFNSAMASFRKHCIESEQLPADLHIILSDIINNAGNIIDIYPYFLDYVKKMYPHIECLDE 168
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+K+ +DL P W+P AR KRKII+H GPTNSGKTY+ALQ+F+ AK G+YC P
Sbjct: 169 LKKI------SDLRNPSNWYPIARSRKRKIIFHVGPTNSGKTYHALQKFISAKSGVYCGP 222
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQE----KKLVPFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA EVF+K N++G C L+TG+E K + +NHI+C+VEM + +Y+VA+IDE
Sbjct: 223 LKLLANEVFNKCNSMGTPCDLITGEEHRYAKSITCPANHISCSVEMTNLQNVYEVAIIDE 282
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQ++ D RG+AWTRALLGL A+EIHLCG+ + + +++ IC TG+ + + Y+R L
Sbjct: 283 IQLIRDPTRGWAWTRALLGLAANEIHLCGESAAIPLIQSICLTTGESVEIKEYKRLTTLE 342
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
+E L L+N++ GDC+V FSR EIF V AIEK H VIYG+LPP T+ QA
Sbjct: 343 IENSALYS-LKNIQPGDCIVCFSRNEIFTVSKAIEK-MGHKVAVIYGSLPPGTKLAQAAK 400
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK-----IIPVPGSQVKQIAGR 557
FND + +LVA++A+GMGLNL+IRR++FYSL + ++ I + S QIAGR
Sbjct: 401 FNDPKDPCKILVATNAIGMGLNLHIRRIIFYSLVQPTINEKGEIDIDTISVSSALQIAGR 460
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR G+ + G TT +DL L + L+Q + +++ GL P +Q+EL+A L N
Sbjct: 461 AGRYGTQWSKGFVTTYKSEDLPLLKKLLEQTPQDIQQAGLHPTADQIELYAYYLPNAPLS 520
Query: 618 QLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY 676
L+ F C +D S YF+C D K +A+M++ + L L R+ FC APVN + P
Sbjct: 521 NLINIFIALCEVDDSLYFICNLDDFKFLADMIQHI-PLPLSTRYLFCCAPVNRKVPLTCS 579
Query: 677 HLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEE 731
L++A SKN PV+I + P ELL LE +L +YLWLS++
Sbjct: 580 MFLKYARQCSKNEPVTILWLRQQIKWPPQIPSTLVELLRLEGIFDILDVYLWLSYRI-SN 638
Query: 732 VFPYAKKAEAMATDI-----------AELLGQSLTNANWKPESRQA 766
+FP + ++ L QS T+A K E Q+
Sbjct: 639 LFPDGDSVRELQYELDKIIEKGIKKITRLFQQSKTDAENKEEQLQS 684
>gi|307185680|gb|EFN71602.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Camponotus floridanus]
Length = 719
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 246/604 (40%), Positives = 348/604 (57%), Gaps = 57/604 (9%)
Query: 161 TRDPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSG----WAANQALAVYI-GKSFF 215
T D + + EL G+ I ++D L + F+ A L Y+ G++F
Sbjct: 54 TPDDINIGAEL----TGSLIKKTD---LLRILNAFTQKAEIKELARQNGLDSYLQGQAF- 105
Query: 216 PTAAGKFRSYFI--KKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIK 268
FR Y I + P D+ L + V LFP F+ + FP D++K
Sbjct: 106 ----TNFRQYCIATESLPADLHIVLSDILQGAGNVTDLFPYFLRHAKQMFPHLDCLDDLK 161
Query: 269 RFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLR 328
+ DL P TW+P AR RKII+H GPTNSGKTY+AL+RF+ AK G+YC+PL+
Sbjct: 162 KI------GDLRSPATWYPLARAKNRKIIFHAGPTNSGKTYHALERFINAKSGVYCAPLK 215
Query: 329 LLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAVIDEIQ 384
LL E G C LLTG+E+K + +NH++C+VEMV+ + Y+VAVIDEIQ
Sbjct: 216 LLVAE--------GTPCDLLTGEERKYIKGADNAANHLSCSVEMVNLNSNYEVAVIDEIQ 267
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
+M D RG+AWTRALLG+ ADEIHLCG+ + +D+V+ IC G+ + + Y+R L +E
Sbjct: 268 LMRDLSRGWAWTRALLGIPADEIHLCGEAAAIDLVKAICFSAGENVEVRRYKRLTNLEIE 327
Query: 445 AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504
+ LG L N++ GDC+V FS+ +IF V ++E VIYG+LPP T+ QA FN
Sbjct: 328 NEA-LGSLINIKPGDCIVCFSKNDIFTVSRSLESRGT-EVAVIYGSLPPGTKLAQAAKFN 385
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK--YN--GDKIIPVPG-SQVKQIAGRAG 559
D N VLVA++A+GMGLNL+IRR++FYSL + YN G+K + + S QIAGRAG
Sbjct: 386 DPKNSCKVLVATNAIGMGLNLHIRRIIFYSLIQPTYNEKGEKEMDILSVSAALQIAGRAG 445
Query: 560 RRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
R G+ + G TT +DL L LKQ EV+ + GL P +Q+EL+A L N T L
Sbjct: 446 RYGTAWDTGYVTTFKREDLPTLKNLLKQTPEVITQAGLHPTADQIELYAYHLPNSTLSNL 505
Query: 620 LEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
++ F C +D S YF+C D K +A+M++ V L L R+ FC AP+N + P
Sbjct: 506 IDIFISLCTVDDSLYFMCNLDDFKFLADMIQHVP-LPLRTRYVFCCAPINRKLPYVCTMF 564
Query: 679 LRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVF 733
L+FA YSKN ++ + +G P + K +L+ LE VL +YLWLS++F ++F
Sbjct: 565 LKFARQYSKNDAITFSWLCQHIGWPFATPKTILDLVHLEGIFDVLDLYLWLSYRFM-DLF 623
Query: 734 PYAK 737
P A+
Sbjct: 624 PDAR 627
>gi|350420390|ref|XP_003492493.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Bombus impatiens]
Length = 729
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 229/563 (40%), Positives = 339/563 (60%), Gaps = 32/563 (5%)
Query: 214 FFPTAAGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F +A G FR + I+ K P D+ L + + +FP F+ + +P DE
Sbjct: 106 IFTSAMGNFRKHCIESDKLPADLHIILSDIIQGSGNITDIFPYFLNHAKQMYPHIDCLDE 165
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR +RKII+H GPTNSGKTY+AL+RF+ AK G+YC P
Sbjct: 166 LRKI------SDLRNPLYWYPIARSKRRKIIFHAGPTNSGKTYHALERFISAKSGVYCGP 219
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQE----KKLVPFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA EVF+K N+ G C L+TG+E K + +NH++C++EM + +Y+V VIDE
Sbjct: 220 LKLLANEVFNKCNSRGTPCDLVTGEEHKYAKNVTSPANHVSCSIEMANIQNIYEVGVIDE 279
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQ++ D RG+AWTRALLGL ADEIHLCG+ + + +V+ IC TG+ + + YER PL
Sbjct: 280 IQLIRDPNRGWAWTRALLGLAADEIHLCGESAAISIVQSICLTTGESVEIKQYERLTPLE 339
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
VE + L LR ++ GDC+V FSR EIF V AIEK H VIYG+LPP T+ QA
Sbjct: 340 VE-NSALCSLRKIQPGDCIVCFSRNEIFSVSSAIEK-MGHKVAVIYGSLPPGTKIAQAAR 397
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK-----IIPVPGSQVKQIAGR 557
FND ++ +LVA++A+GMGLNL+IRR++FYS+ + ++ + + S QIAGR
Sbjct: 398 FNDINDPCKILVATNAIGMGLNLHIRRIIFYSIVQPTINEKGEAGVDTISVSSALQIAGR 457
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR G+ + G TT +DL L + L+Q E +++ G+ P +Q+EL+A L N
Sbjct: 458 AGRYGTQWSKGFVTTYKPEDLPLLKKLLQQIPEEIEQAGVHPTPDQIELYAYYLPNAPLS 517
Query: 618 QLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY 676
L+ F C LD + YF+C D K +A+ ++ + L L R+ FC APVN + P
Sbjct: 518 NLINIFIALCELDSTLYFICNLDDFKFLADTIQHIP-LPLRTRYVFCCAPVNRKMPLTCS 576
Query: 677 HLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEE 731
LL++A SKN P ++ + P N A+LL LE+ VL +YLWLS++ +
Sbjct: 577 MLLKYARQCSKNEPATVLWLRRQINWPPKIPLNLADLLRLESIFDVLDVYLWLSYRM-PD 635
Query: 732 VFPYAKKAEAMATDIAELLGQSL 754
+FP A +++ ++ +++ Q +
Sbjct: 636 LFPDADAVKSLQEELDKIIEQGI 658
>gi|157116275|ref|XP_001658414.1| ATP-dependent RNA and DNA helicase [Aedes aegypti]
gi|108876556|gb|EAT40781.1| AAEL007512-PA [Aedes aegypti]
Length = 745
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 246/614 (40%), Positives = 350/614 (57%), Gaps = 39/614 (6%)
Query: 163 DPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKF 222
D + V EL G ++++ E+L+ + +F SN L I + A F
Sbjct: 52 DDINVGAEL----TGGTLDKA--EMLKVILKF-SNRKEIKFLCLENGIDSNLQQQAFTSF 104
Query: 223 RSYFIKK--CPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIE 275
R Y ++ P D+ L + V +FP F+ + FP D++K+
Sbjct: 105 RKYCMETDALPADLHVVLSDILQGAGHVDDIFPYFLRHVKQIFPHLECMDDLKKI----- 159
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+DL +P W+P AR + R+II+H GPTNSGKTY+A++RFM AK G+YC PL+LLA EV+
Sbjct: 160 -SDLRQPANWYPSARAINRRIIFHSGPTNSGKTYHAMERFMSAKSGVYCGPLKLLASEVY 218
Query: 336 DKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+K N G C L+TG+E+K S H+ACTVEM S Y+VAVIDEIQ++ D R
Sbjct: 219 NKSNQRGTPCDLVTGEERKFADPNGNASKHVACTVEMTSITTPYEVAVIDEIQLLKDVGR 278
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWTRALLGLMA+EIH+CG+P LD+++KIC T +EL ++Y+R L +E + L
Sbjct: 279 GWAWTRALLGLMAEEIHVCGEPGTLDLLQKICDTTNEELEVRNYKRLTALHIEDQA-LQT 337
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L NVR GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND +N
Sbjct: 338 LDNVRPGDCIVCFSKNDIYSVSREIEAR-GREVAVIYGGLPPGTKLAQAAKFNDPENSCK 396
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSK----YNGDK-IIPVPGSQVKQIAGRAGRRGSIYP 566
VLVA+DA+GMGLNL+IRRV+FYS+ K G+K + + SQ QIAGRAGR G +
Sbjct: 397 VLVATDAIGMGLNLSIRRVIFYSIIKPSVNQKGEKEMDTISVSQALQIAGRAGRYGMKWD 456
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
+G TT +DL L L Q + + + GL P + +EL+A L N T L+E F
Sbjct: 457 EGYVTTYKPEDLPTLKNILGQTPDPLTQAGLHPTADMIELYAYHLPNATLSNLMEIFVSL 516
Query: 627 CRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
+D S YF+C + K +A ++ V L L R+ FC AP+N + P L++A Y
Sbjct: 517 STVDDSLYFMCNTEDFKFLAETIQHVP-LPLRARYIFCCAPINRQMPFVCSMFLKYARRY 575
Query: 686 SKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
SKN PV+ G P + +L+ LE VL +YLWLS++F ++FP K
Sbjct: 576 SKNEPVTFDWLCNQCGWPFQLPRTIIDLVHLEAVFDVLDLYLWLSYRFP-DLFPDEKLVR 634
Query: 741 AMATDIAELLGQSL 754
+ ++ +++ Q +
Sbjct: 635 DIQKELDDIIQQGV 648
>gi|357626560|gb|EHJ76612.1| putative ATP-dependent RNA and DNA helicase [Danaus plexippus]
Length = 1069
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/565 (41%), Positives = 332/565 (58%), Gaps = 58/565 (10%)
Query: 234 VAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPF 288
++ LV G +D LFP F+ FP D++K+ +DL P W+P
Sbjct: 135 ISDILVGAGNVND----LFPYFLRHARLAFPHLDCLDDLKKI------SDLRTPANWYPE 184
Query: 289 ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLL 348
AR + RKII+H GPTNSGKTY+A+++F+ AK G+YC PL+LLA E++ K N+ G C L+
Sbjct: 185 ARNINRKIIFHAGPTNSGKTYHAMEKFLAAKSGVYCGPLKLLATEIYHKSNSKGTPCDLI 244
Query: 349 TGQE-------KKLV------------PF---------SNHIACTVEMVSTDEMYDVAVI 380
TG+E K LV PF S H+ACTVEM S ++ YDVA+I
Sbjct: 245 TGEERRHASQYKTLVDNVEDNKELDHEPFLLEEPVLTPSKHVACTVEMTSLNDTYDVAII 304
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG+AWTRA+LGL ADEIHLCG+ + +V ++C+ TG+EL + Y+R
Sbjct: 305 DEIQMLGDKGRGWAWTRAVLGLKADEIHLCGEAGAISLVEEMCNTTGEELEVRTYKRLTE 364
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L VE + LG L NV++GDC+V F++ +I+ V AIE+ VIYG+LPP T+ QA
Sbjct: 365 LKVE-NSALGTLDNVKAGDCIVCFNKNDIYSVSRAIEQR-GREVAVIYGSLPPGTKLAQA 422
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK----YNGDKIIPVPG-SQVKQIA 555
N FND ++ V+VA+DA+G+G+NL+IRR++FYSL K +GDK + V SQ QIA
Sbjct: 423 NKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINVDGDKEMDVISISQALQIA 482
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR GS + G TT +DL L L QP + V + GL P EQ+EL+A L + +
Sbjct: 483 GRAGRYGSAWETGYVTTFKSEDLATLKTLLSQPPDPVTQAGLHPTAEQMELYAYHLPHAS 542
Query: 616 FCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKA 674
L++ F C +D + YF+C + K +A M++ V L L R+ FC AP+N + P
Sbjct: 543 LSSLMDIFVHLCTVDATLYFMCNTEGFKFLAEMIQHVP-LPLRARYVFCCAPINNKLPFV 601
Query: 675 MYHLLRFASSYSKNAPV-----SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFK 729
L+ YS+N P+ S + P + + +L+ LE VL +YLWLS++F
Sbjct: 602 CATFLKMVRQYSRNEPITRNWMSNVVDWPLPAPRTIMDLVHLEAVFDVLELYLWLSYRFP 661
Query: 730 EEVFPYAKKAEAMATDIAELLGQSL 754
++FP K M ++ ++ Q +
Sbjct: 662 -DMFPDVKLVREMEVELDAIIQQGI 685
>gi|308800936|ref|XP_003075249.1| RNA helicase like protein (ISS) [Ostreococcus tauri]
gi|116061803|emb|CAL52521.1| RNA helicase like protein (ISS), partial [Ostreococcus tauri]
Length = 645
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/480 (42%), Positives = 300/480 (62%), Gaps = 6/480 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D+ P W+P AR M+R+I H GPTNSGKT+ A++R +A G+YC+PLRLLA E+ +
Sbjct: 39 DMRDPAAWYPLARSMRREITLHVGPTNSGKTHAAMERLKQAASGVYCAPLRLLAWEISES 98
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+NA+GV C+L+TGQE + P + H++ TVEM +YD AVIDE+Q++SD RGYA+TR
Sbjct: 99 MNAVGVACTLVTGQEIREAPNARHVSSTVEMSDVSSVYDCAVIDEVQLLSDPHRGYAYTR 158
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
ALLGL A E+HLCGDP V+ +V+KI TGD L + YER PL V ++ ++ +++VR
Sbjct: 159 ALLGLAAIELHLCGDPRVVPLVKKIVESTGDLLTVKEYERLSPLEVSSE-IVKSVKDVRE 217
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GD +VAFSR +++++K +EK +N CVIYGALPPE R +QA LFN ++ +DVL+ASD
Sbjct: 218 GDALVAFSRADVYKMKRELEKKSNFRACVIYGALPPEARSRQALLFNKPESGYDVLIASD 277
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLT-TTLNLD 576
A+GMGLNLN+RRV+F ++SK++G + +V+QIAGRAGR G Y G + TT+
Sbjct: 278 AIGMGLNLNVRRVIFTTMSKFDGVGTRHLEAPEVRQIAGRAGRYGLDYAGGGSVTTMKRS 337
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
+ L+ L+ + + G+ P EQVE + + + L+ +L Y +
Sbjct: 338 EHKILVNALEGELKPLDSAGIAPSLEQVEEYCAIHRGASLLEALQALSNKAKLASHYRMR 397
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
VA ML+K L+LED+F F APV+++DP LL F ++ + V + +
Sbjct: 398 NMSEPIAVAKMLKKFP-LALEDQFTFAIAPVDVKDPMVCAALLTFVKTFCTHGRVGVRLI 456
Query: 697 M--PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
P + KN +L LE+ H+ L +YLWL+ + + FP + A+A T A + L
Sbjct: 457 SLPPPRTPKNPIQLQKLESAHKCLDLYLWLARKL-PKAFPEPELADAYRTATATAISAGL 515
>gi|195446006|ref|XP_002070584.1| GK10952 [Drosophila willistoni]
gi|194166669|gb|EDW81570.1| GK10952 [Drosophila willistoni]
Length = 768
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 241/611 (39%), Positives = 343/611 (56%), Gaps = 44/611 (7%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE+ S +G L Y+ + F G FR Y
Sbjct: 76 ELVGKLEKSEILKILNK--FTQRREIKSLCSENG------LDSYLQQQAF----GSFRRY 123
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 124 CIEAENLPVDLHIIFSDIMQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 177
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 178 LRQPANWYTNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKA 237
Query: 339 NALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
N G C L+TG+E+K N H+ACTVEM S + Y+VAVIDEIQ + D RG+A
Sbjct: 238 NERGTPCDLVTGEERKFGISENSPASHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWA 297
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA LGL+ADE+H+CG+ L+++ KIC TG+ + + Y+R L VE T LG L N
Sbjct: 298 WTRAFLGLIADEVHVCGEAGSLELLEKICETTGETVEVRRYDRLTELTVE-NTALGSLDN 356
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
VR GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND +N V+V
Sbjct: 357 VRPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPENSCKVMV 415
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGL 569
A+DA+GMGLNL+IRR++FYSL K G++ I + S QIAGRAGR + + G
Sbjct: 416 ATDAIGMGLNLSIRRIIFYSLVKPTLNERGEREIDTISVSAALQIAGRAGRFRTQWEHGY 475
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
T DDL L L Q E +K+ GL P +Q+EL+A L N + L++ F C +
Sbjct: 476 VTAFKADDLSTLQRILGQTPEPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTV 535
Query: 630 DGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
D S YF+C D K +A M++ V L L R+ FC AP+N + P L+ A YS+N
Sbjct: 536 DDSLYFMCNIDDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSRN 594
Query: 689 APVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMA 743
P++ G P K +L+ LE V+ +YLWLS++F ++FP A
Sbjct: 595 EPITFDFIKRNCGWPFKLPKTILDLVHLEAIFDVMDLYLWLSYRFM-DLFPEAASVREAQ 653
Query: 744 TDIAELLGQSL 754
++ E++ Q +
Sbjct: 654 KELDEIIQQGV 664
>gi|195036898|ref|XP_001989905.1| GH18537 [Drosophila grimshawi]
gi|193894101|gb|EDV92967.1| GH18537 [Drosophila grimshawi]
Length = 767
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 244/639 (38%), Positives = 353/639 (55%), Gaps = 47/639 (7%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE+ S +G L Y+ + F G FR +
Sbjct: 72 ELVGKLEKSELLKILNK--FAQRREIKALCSENG------LDSYLQQQAF----GSFRRF 119
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 120 CIEAENLPVDIHIIFSDIMQGAGHINDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 173
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 174 LRQPANWYTNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKA 233
Query: 339 NALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
N G C L+TG+E+K N H+ACTVEM S + Y+VAVIDEIQ M D RG+A
Sbjct: 234 NERGTPCDLVTGEERKFGISENSPASHVACTVEMTSVNTPYEVAVIDEIQQMRDPQRGWA 293
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA LGL+ADE+H+CG+ LD++ KIC TG+ + + Y+R L VE+ + LG L N
Sbjct: 294 WTRAFLGLIADEVHVCGEAGALDLLEKICETTGETVEVRRYDRLTELTVES-SALGSLDN 352
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
V GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND +N V+V
Sbjct: 353 VMPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPENSCKVMV 411
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
A+DA+GMGLNL+IRR++FYSL K + +I + S QIAGRAGR + + G
Sbjct: 412 ATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREIDTISVSSALQIAGRAGRYRTQWEHGF 471
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
T DDL L L+Q E +K+ GL P +Q+EL+A L N + L++ F C +
Sbjct: 472 VTAFKSDDLKILQRILEQTPEPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTV 531
Query: 630 DGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
D S YF+C + K +A M++ V L L R+ FC AP+N + P L+ A YS+N
Sbjct: 532 DDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSRN 590
Query: 689 APVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMA 743
P++ G P K +L+ LE+ V+ +YLWLS++F ++F A
Sbjct: 591 EPITFDFIKRNCGWPPKLPKTILDLVHLESVFDVMDLYLWLSYRFM-DLFLEASSVREAQ 649
Query: 744 TDIAELLGQS---LTNANWKPESRQAGKPKLHQQREDGY 779
++ E++ Q +T E+ Q G+ +Q R Y
Sbjct: 650 KELDEIIQQGVFQITRLLKNTEAGQDGEIPSYQMRRATY 688
>gi|307214392|gb|EFN89463.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Harpegnathos saltator]
Length = 750
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/550 (42%), Positives = 328/550 (59%), Gaps = 22/550 (4%)
Query: 218 AAGKFRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFPDEIKRFRAMIE 275
A FR Y ++ V ++V DA V +FP F+ + FP I + +
Sbjct: 188 AFTNFRQYCLETETLPVDLHIVLSDILQDAGNVTDIFPYFLRHVKQMFP-HIDCLDDLKK 246
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+DL P W+P AR RKII+H GPTNSGKTY+AL+RF+ AK G+YC PL+LL EVF
Sbjct: 247 ISDLRSPANWYPLARAKNRKIIFHAGPTNSGKTYHALERFINAKSGVYCGPLKLLVGEVF 306
Query: 336 DKVNALGVYCSLLTGQE----KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
K N G C LLTG+E K L SNH++C+VEMV+ Y+VAVIDEIQ+M D R
Sbjct: 307 QKCNQNGTPCDLLTGEERTYAKGLDNPSNHLSCSVEMVNLQSNYEVAVIDEIQLMRDLNR 366
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWTRALLG+ ADEIHLCG+ + +D+V+ IC TG+++ + Y+R L +E + LG
Sbjct: 367 GWAWTRALLGIPADEIHLCGEAAAIDLVKAICLSTGEDVEIRRYKRLTQLEIENQA-LGS 425
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L NV+ GDC+V F++ +IF V ++E VIYG+LPP T+ QA FND N
Sbjct: 426 LNNVQPGDCIVCFNKNDIFTVSRSLESR-GIEVAVIYGSLPPGTKLAQAAKFNDPKNSCK 484
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYN----GDKIIPVPG-SQVKQIAGRAGRRGSIYP 566
VLVA++A+GMGLNL+IRR++FYSL + + G+K + V S QIAGRAGR G+ +
Sbjct: 485 VLVATNAIGMGLNLHIRRIIFYSLIQPSINEKGEKEMDVLSVSATLQIAGRAGRYGTAWT 544
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
G TT +DL L + L Q E++ + GL P +Q+EL+A L N L++ F
Sbjct: 545 TGYVTTFKQEDLRTLKDLLDQTPEIITQAGLHPTADQIELYAYHLPNSPLSNLMDIFVSL 604
Query: 627 CRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
+D S YF+C D K +A+M++ V L L R+ FC AP+N + P L+FA Y
Sbjct: 605 STVDNSLYFMCNLDDFKFLADMIQHVP-LPLRARYVFCCAPINKKSPYVCAMFLKFARQY 663
Query: 686 SKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
SKN ++ + +G P K +L+ LE VL +YLWLS++F ++FP AK
Sbjct: 664 SKNDAITFSWLCQHIGWPFAIPKTILDLVHLEGVFDVLDLYLWLSYRFM-DLFPDAKIVR 722
Query: 741 AMATDIAELL 750
+ ++ L+
Sbjct: 723 DVQKELDALI 732
>gi|195109112|ref|XP_001999134.1| GI23236 [Drosophila mojavensis]
gi|193915728|gb|EDW14595.1| GI23236 [Drosophila mojavensis]
Length = 767
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 237/611 (38%), Positives = 342/611 (55%), Gaps = 44/611 (7%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE+ S +G L Y+ + F G FR Y
Sbjct: 70 ELVGKLEKSELLKILNK--FAQRREIKALCSENG------LDSYLQQQAF----GSFRRY 117
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P DV + + +FP F+ FP D++K+ +D
Sbjct: 118 CIEAENLPVDVHITFSDIMQGAGHIDDIFPYFLRHAKTMFPHLDCMDDLKKI------SD 171
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+P AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 172 LRQPANWYPNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKA 231
Query: 339 NALGVYCSLLTGQEKKL----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
N G C L+TG+E+K +NH+ACTVEM S + Y+VAVIDEIQ + D RG+A
Sbjct: 232 NERGTPCDLVTGEERKFGISDTSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDQQRGWA 291
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA LGL+ADE+H+CG+ L+++ KIC TG+ + + Y+R L VE + LG L N
Sbjct: 292 WTRAFLGLIADEVHVCGEAGALELLEKICETTGETVEVRRYDRLTELTVE-DSALGSLDN 350
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
V GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND N V+V
Sbjct: 351 VMPGDCIVCFSKNDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPSNSCKVMV 409
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
A+DA+GMGLNL+IRR++FYSL K + +I + S QIAGRAGR + + G
Sbjct: 410 ATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREIDTISVSSALQIAGRAGRYRTQWEHGY 469
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
T +DL L L Q E +K+ GL P +Q+EL+A L N + L++ F C +
Sbjct: 470 VTAFKSEDLQTLQRLLSQTPEPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTV 529
Query: 630 DGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
D S YF+C + K +A M+ V L L R+ FC AP+N + P L+ A YS+N
Sbjct: 530 DDSLYFMCNIEDFKFLAEMINHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSRN 588
Query: 689 APVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMA 743
P++ G P + +L+ LE+ V+ +YLWLS++F ++FP A
Sbjct: 589 EPITFDFIKRNCGWPFKLPRTILDLVHLESVFDVMDLYLWLSYRFM-DLFPEAAHVREAQ 647
Query: 744 TDIAELLGQSL 754
++ E++ Q +
Sbjct: 648 KELDEIIQQGV 658
>gi|449268993|gb|EMC79805.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial, partial [Columba
livia]
Length = 588
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 231/560 (41%), Positives = 336/560 (60%), Gaps = 27/560 (4%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP--DEIKRFR 271
F A FR Y ++ +++ V LFP F+ + FP D + R
Sbjct: 29 LFHQAFISFRKYIMESSSVSADLHIILNDICCGHVDDLFPFFLRHAKQIFPMLDCMDDLR 88
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
+ +DL P W+P AR ++RKII+H GPTNSGKT++A+QRF+ AK GIYC PL+LLA
Sbjct: 89 KI---SDLRLPPNWYPDARAIQRKIIFHAGPTNSGKTHHAIQRFLSAKSGIYCGPLKLLA 145
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLVPFSN-------HIACTVEMVSTDEMYDVAVIDEIQ 384
E+F K N V C L+TG+E+ ++N HIACT+EM ST+ Y+VAVIDEIQ
Sbjct: 146 HEIFQKSNDANVPCDLVTGEERV---YANEDARPAPHIACTIEMCSTNTPYEVAVIDEIQ 202
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
M+ D RG+AWTRALLGL A+EIH+CG+P+ +D+V ++ TG+E+ ++Y+R PL V
Sbjct: 203 MIRDPARGWAWTRALLGLCAEEIHVCGEPAAIDLVTELMYTTGEEVEVRNYKRLTPLTV- 261
Query: 445 AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504
L L N+R GDCVV FS+ +I+ V IE C VIYG+LPP T+ +QA FN
Sbjct: 262 LDYALESLDNLRPGDCVVCFSKNDIYSVSRQIEAR-GLECAVIYGSLPPGTKLEQAKKFN 320
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAG 559
D ++ +LVA+DA+GMGLNL I+R++F S+ K G+K I + SQ QIAGRAG
Sbjct: 321 DPNDPCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKGEKEIDSITTSQALQIAGRAG 380
Query: 560 RRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
R GS + G TT++ +DL L E L++P VK GL P EQ+E+FA L + T L
Sbjct: 381 RYGSSFKQGEVTTMHREDLAQLKEILREPVPPVKAAGLHPTPEQIEMFAYHLPDATLSNL 440
Query: 620 LEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLL 679
++ F ++DG YF+C D K +A+M++ + L+L R+ FC AP+N ++P LL
Sbjct: 441 IDIFVSLSQVDGLYFVCNIDDFKFLADMIQHIP-LNLRSRYVFCTAPLNRKEPFVCTTLL 499
Query: 680 RFASSYSKN---APVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYA 736
+ + + + A + P + KN EL+ LE H V +YLWLS++F ++FP A
Sbjct: 500 KVSYFFLQKVTFAWLCRHTKWPLAAPKNIKELVHLEAVHDVFDLYLWLSYRFM-DMFPDA 558
Query: 737 KKAEAMATDIAELLGQSLTN 756
+ + + +++ ++N
Sbjct: 559 AQVRDIQKKLDDIIQVGVSN 578
>gi|346472467|gb|AEO36078.1| hypothetical protein [Amblyomma maculatum]
Length = 674
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/521 (42%), Positives = 320/521 (61%), Gaps = 20/521 (3%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L P F++ + FP ++ + + +DL P W+P AR ++RK+I+H GPTNSGKT+
Sbjct: 94 LVPYFLQHAKQIFP-HLECMEELQKISDLRLPANWYPEARAIQRKVIFHAGPTNSGKTHA 152
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTV 366
AL+RF A G+YC PL++LA+EVF K N G C L+TG+E++ ++H+ACTV
Sbjct: 153 ALERFQTANSGLYCGPLKMLAVEVFQKTNEKGTPCDLVTGEERRYALPDGQPASHVACTV 212
Query: 367 EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426
EM + YDVAVIDEIQMM D RG+AWTRALLGL A E+HLCG+ + + +VR + +
Sbjct: 213 EMATVHTPYDVAVIDEIQMMRDPQRGWAWTRALLGLAAKEVHLCGEAAAVGLVRTLLASL 272
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
G+EL + Y+R LVVE + L L ++ GDC+V FS+ +I++V + IE+ C V
Sbjct: 273 GEELEVRKYKRLTQLVVENRA-LESLEKIQPGDCIVCFSKSDIYQVSLHIERQ-GLECAV 330
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK----YNGDK 542
IYG LPP T+ QA+ FND + VLVA+DA+GMGLNL+I RV+FYSL K G++
Sbjct: 331 IYGGLPPGTKLAQAHKFNDPAHPCKVLVATDAIGMGLNLSIGRVIFYSLVKPALNERGER 390
Query: 543 II-PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601
+ + SQ QIAGRAGR GS + G TT+ DL L + L P E ++ GL P
Sbjct: 391 QLDTISSSQALQIAGRAGRFGSRFEVGRVTTMKPQDLPALKQILAAPVEQIQVAGLHPTA 450
Query: 602 EQVELFAGQLSNYTFCQLLEKFGENCRLDG-SYFLCRHDHIKKVANMLEKVQGLSLEDRF 660
EQ+ELFA L + T L++ F C++D SYF+C + K +A+M++ V L L R+
Sbjct: 451 EQIELFAYHLPHATLANLVDIFVSLCKVDASSYFMCNLEGFKFLADMIQHVP-LPLRARY 509
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKH 715
FC +P+N + P L+FA YS+N P++ +G P K +L+ LE
Sbjct: 510 VFCCSPINQKMPFVCSMFLKFARQYSRNEPLTCQWLGRNIGWPFAVPKAIMDLVHLEAVF 569
Query: 716 QVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
VL +YLWLS++F ++FP A+ AM ++ ++ + + N
Sbjct: 570 DVLDLYLWLSYRFP-DLFPDAEAVRAMQQELDLIIQKGVLN 609
>gi|410912098|ref|XP_003969527.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Takifugu rubripes]
Length = 775
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 229/589 (38%), Positives = 344/589 (58%), Gaps = 30/589 (5%)
Query: 186 EVLREVFRFFSNSGWAANQALAVYIG--KSFFPTAAGKFRSYFIKKC--PDDVAQYLVWL 241
EVL+ + RF+ Q LA G F A FR Y ++ P D+ + +
Sbjct: 92 EVLKALNRFYKRKEM---QKLASEHGLDARLFHQAFISFRKYVLEMTYLPADLHIIINDI 148
Query: 242 GPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYH 299
+ ++P F+ + FP D + R + +DL P W+P AR ++RK+I+H
Sbjct: 149 CCGAGHIDDIYPYFMRHAKQIFPMLDCLDDLRKI---SDLRLPAYWYPEARAIQRKVIFH 205
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-- 357
GPTNSGKTY A+QR++ AK G+YC PL+LLA E+F+K N GV C L+TG+E+ +
Sbjct: 206 AGPTNSGKTYQAIQRYLAAKSGVYCGPLKLLAHEIFEKSNTAGVMCDLVTGEERIFMEPE 265
Query: 358 --FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV 415
+ H+ACT+EM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+CG+ +
Sbjct: 266 GQAAAHVACTIEMCSVTTPYEVAVIDEIQMIRDPSRGWAWTRALLGLCAEEIHVCGESAA 325
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+D VR++ TG+E+ Y+R P V + + L +R GDC+V FS+ +I+ +
Sbjct: 326 VDFVRELMYTTGEEVEVHTYKRLTPFTVLDQA-VESLDKLRPGDCIVCFSKNDIYSISRQ 384
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
IE C VIYG+LPP T+ QA FND ++ ++VA+DA+GMGLNL+I+R++F SL
Sbjct: 385 IEIR-GLECAVIYGSLPPGTKLSQAKKFNDPNDPCKIMVATDAIGMGLNLSIKRIIFNSL 443
Query: 536 SKYN----GDKII-PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
K N G+K + + SQ QIAGRAGR S + +G TTL DDL L E L +
Sbjct: 444 VKPNINEKGEKHMETISTSQALQIAGRAGRFSSKFKEGEVTTLYRDDLPVLKEILSHSVD 503
Query: 591 VVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650
++ GL P EQ+E+FA L + T L++ F ++DG YF+C D K +A+M++
Sbjct: 504 PIESAGLHPTAEQIEMFAYHLPDATLSNLVDIFVSLSQVDGLYFVCNIDDFKFLADMIQH 563
Query: 651 VQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKND 705
+ L+L R+ FC AP+N + P L+FA +S++ P++ + P + KN
Sbjct: 564 IP-LNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSRDEPLTFDWVCRHVNWPLAAPKNI 622
Query: 706 AELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
+L+ LE H VL +YLWLS++F ++FP + ++ +++ Q +
Sbjct: 623 KDLVHLEAVHDVLDLYLWLSYRFM-DMFPDTAMVREIQQELDKVIQQGV 670
>gi|328875555|gb|EGG23919.1| Mitochondrial RNA helicase [Dictyostelium fasciculatum]
Length = 852
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/495 (42%), Positives = 308/495 (62%), Gaps = 12/495 (2%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
A+L PH WFP AR MKRK I H GPTNSGKT+NAL+R MEA+ G++C PLR+LA +V++
Sbjct: 347 ANLKHPHNWFPVARGMKRKFILHVGPTNSGKTHNALKRLMEAENGVFCGPLRMLAHQVYE 406
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
K+N + C+L TGQ+ + P + H A TVEM ST + DVAVIDE QM+SD RG+AWT
Sbjct: 407 KLNTENIPCNLTTGQQVIVTPNARHTAYTVEMASTRDEVDVAVIDEFQMLSDIDRGFAWT 466
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RA+LG+ A EIHLCGD + +++V+++ TGD + +Y+R PLVV+ K L +
Sbjct: 467 RAILGIPAKEIHLCGDNTSVELVKRMLDLTGDTIEVNYYDRLSPLVVDTKP--ASLGRLE 524
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GDCVVAFSRRE+ K ++EK C V+YGALPPE R QQ FND ++ V+VA+
Sbjct: 525 KGDCVVAFSRREVLTTKASLEKMYGKKCSVVYGALPPEARVQQTRAFNDTSSDVQVIVAT 584
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI+R++F ++ K++G + + S++KQIAGRAGR S Y G+ T N
Sbjct: 585 DAIGMGLNLNIKRIIFSTIKKFDGKQQRLLKHSELKQIAGRAGRFASAYNVGMVTCTNAR 644
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT--FCQLLEKFGENCRLDGSYF 634
DL + + L+ P ++ G+FP +EQ+E F+ N++ F +L+ F E+ LD YF
Sbjct: 645 DLPTIKKLLELPNVANERAGVFPQWEQLETFSTLQDNHSIPFSELMTMFIEHTELDNLYF 704
Query: 635 LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA 694
L + + A +++ + + + DR+ F AP+ + L++FA+ +S N V +
Sbjct: 705 LEDIEDKLRAAKLIDHL-DMEVSDRYIFIMAPIK-NGVEIEKKLVQFATQFSNNKEVRLR 762
Query: 695 MGMPK--GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAE---L 749
MP+ S +L++LE + + +YLWL +F+ F +KA + DI E L
Sbjct: 763 EKMPEFSSSVSKQKQLVELEIIYAISDLYLWLGQRFRSR-FQDVEKASQICNDINEAIPL 821
Query: 750 LGQSLTNANWKPESR 764
L Q + N K + R
Sbjct: 822 LLQDDRDTNSKKKKR 836
>gi|260787114|ref|XP_002588600.1| hypothetical protein BRAFLDRAFT_131755 [Branchiostoma floridae]
gi|229273765|gb|EEN44611.1| hypothetical protein BRAFLDRAFT_131755 [Branchiostoma floridae]
Length = 750
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/589 (39%), Positives = 347/589 (58%), Gaps = 30/589 (5%)
Query: 186 EVLREVFRFFSNSGWAANQALAVYIG--KSFFPTAAGKFRSYFIKK--CPDDVAQYLVWL 241
EVL+ + RF+ Q L G F FR + ++ P +V L +
Sbjct: 50 EVLKALNRFYKRK---EIQTLGAENGLDNHLFHQGFLSFRKWIVESDVLPPEVHIMLSDI 106
Query: 242 GPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYH 299
V +FP F++ C + FP D + R + +S D P +W+ AR + RKI++H
Sbjct: 107 LRGSGHVDDIFPYFMQHCKQIFPMLDCMDDLRKISDSRD---PASWYSEARAIHRKIVFH 163
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV--- 356
GPTNSGKTY+AL+RF +AK GIYC PL+LLA EV K N GV C L+TG+E+
Sbjct: 164 AGPTNSGKTYHALERFSQAKSGIYCGPLKLLANEVHQKTNDRGVPCDLVTGEERVYARED 223
Query: 357 -PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV 415
S H++CTVEM + + Y+VAV+DEIQM+ D RG+AWTRALLGL A+EIHLCG+P+
Sbjct: 224 GQPSGHVSCTVEMTNIHQPYEVAVVDEIQMIKDPQRGWAWTRALLGLCAEEIHLCGEPAA 283
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+D+V ++ TG+EL + Y+R L K LG L N+R GD +V FS+ +IF++
Sbjct: 284 IDLVTEMMLSTGEELEVRRYKRLTGLTY-LKEPLGSLNNLRPGDAIVCFSKADIFQLSRQ 342
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
IE C VIYG+LPP T+ QA FN+ D+ +LVA+DA+GMG+NL+I+RV+F SL
Sbjct: 343 IEA-MGKECAVIYGSLPPGTKLAQAKKFNNPDDPCKILVATDAIGMGINLSIKRVIFNSL 401
Query: 536 SK----YNGDKIIP-VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
K G+K + + SQ QI GRAGR G+ + DG TT++ +DL L + ++QP E
Sbjct: 402 IKPTLNEKGEKEMDNLSTSQALQIGGRAGRFGTHFQDGEVTTMHKEDLQTLHDIVQQPVE 461
Query: 591 VVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650
++ GL P EQVE+FA QL + + L++ F ++D YF+C + K +A+M++
Sbjct: 462 PIEAAGLHPTAEQVEMFAYQLPDASMSNLIDIFINLAQVDSRYFVCNIEDFKFLADMIQH 521
Query: 651 VQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKND 705
+ L+L R+ FC AP+N + P L+FA +S+ P++ +G P +
Sbjct: 522 IP-LNLRARYVFCCAPINKKQPFLCTSFLKFARQFSRGEPITFDWVCRLIGWPVAMPRTI 580
Query: 706 AELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
EL+ LE+ H VL +YLWLS++F ++FP + ++ L+ +S+
Sbjct: 581 RELMYLESIHDVLDVYLWLSYRFM-DMFPDGGLIRMIQRELDLLIQESV 628
>gi|356495782|ref|XP_003516752.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 600
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/499 (43%), Positives = 318/499 (63%), Gaps = 7/499 (1%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PHTW+P AR R++I H GPTNSGKT++AL++ + G+YC PLRLLA E+
Sbjct: 92 TDLTCPHTWYPQARRKHRRVILHVGPTNSGKTHHALKQLESSASGVYCGPLRLLAWEIAK 151
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C L+TGQE++ V +NH A TVEM Y AVIDEIQM+ RGY++T
Sbjct: 152 RLNKAQVPCDLITGQEREEVDGANHKAVTVEMADLSADYQCAVIDEIQMIGCTTRGYSFT 211
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLG+ ADE+HLCGDP+ + ++++I TGDE+ Q YER PLV LG NVR
Sbjct: 212 RALLGIAADELHLCGDPAAVPLIQEILKITGDEIEVQFYERLSPLV-PLNVPLGSFSNVR 270
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDC+V FSR+EI+++K IEK H C V+YG+LPPETR +QA++FND +EFDVLVAS
Sbjct: 271 NGDCIVTFSRQEIYKLKKRIEKEGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVAS 330
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F ++ K++G ++ + ++KQIAGRAGR GS +P G T ++ +
Sbjct: 331 DAIGMGLNLNISRIIFSTMKKFDGFEVRDLSVPEIKQIAGRAGRYGSNFPVGEVTCMDEE 390
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
DL L L P ++++ GL P F+ + +++ F Q+L F ++ +L +YF+
Sbjct: 391 DLLLLHSSLNSPSPILERAGLLPTFDLMYMYSRLHPRNGFYQILAHFLDHAKLSENYFIV 450
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + KVA +++++ L L +++ FC +P ++ D + L +FA +Y+K V +
Sbjct: 451 NCEQLLKVAAVIDELP-LGLHEKYLFCISPADMDDEISSQGLTQFAENYAKKGLVRLREI 509
Query: 697 MPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
GS K A L +LE+ H+VL +Y+WLS + EE FP + A + + L+ +
Sbjct: 510 FTPGSLKVPKTPAALKELESIHKVLDLYVWLSFRL-EESFPDHELAVSQKAICSMLIEEF 568
Query: 754 LTNANW-KPESRQAGKPKL 771
L W KP +R+ K+
Sbjct: 569 LERLGWQKPMARRLASHKM 587
>gi|195394872|ref|XP_002056063.1| GJ10732 [Drosophila virilis]
gi|194142772|gb|EDW59175.1| GJ10732 [Drosophila virilis]
Length = 767
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 243/645 (37%), Positives = 356/645 (55%), Gaps = 50/645 (7%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE+ S +G L Y+ + F G FR +
Sbjct: 72 ELVGKLEKSELLKILNK--FAQRREIKALCSENG------LDSYLQQQAF----GSFRRF 119
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 120 CIEAENLPADLHIIFSDIMHGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 173
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 174 LRQPANWYSNARAITRKIVFHAGPTNSGKTYHAMERYLGAKTGVYCGPLKLLATEVYNKA 233
Query: 339 NALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
N G C L+TG+E+K P +NH+ACTVEM S + Y+VAVIDEIQ + D RG+
Sbjct: 234 NERGTPCDLVTGEERKFGISENSP-ANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGW 292
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA LGL+ADE+H+CG+ L+++ KIC TG+ + + Y+R L VE+ + LG L
Sbjct: 293 AWTRAFLGLIADEVHVCGEAGALELLEKICETTGETVEVRRYDRLTELTVES-SALGSLD 351
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
NV GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND +N V+
Sbjct: 352 NVMPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPENSCKVM 410
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDG 568
VA+DA+GMGLNL+IRR++FYSL K + +I + S QIAGRAGR + + G
Sbjct: 411 VATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREIDTISVSSALQIAGRAGRYRTQWEHG 470
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
T +DL L L Q E +K+ GL P +Q+EL+A L N T L++ F C
Sbjct: 471 YVTAFKAEDLQTLQRILNQTPEPLKQAGLHPTADQIELYAYHLPNSTLSNLMDIFVNLCT 530
Query: 629 LDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
+D S YF+C + K +A M++ V L L R+ FC AP+N + P L+ A YS+
Sbjct: 531 VDDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 589
Query: 688 NAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
N P++ G P K +L+ LE+ V+ +YLWLS++F ++FP A
Sbjct: 590 NEPITFDFIKKNCGWPFKLPKTILDLVHLESVFDVMDLYLWLSYRFM-DLFPEAANVREA 648
Query: 743 ATDIAELLGQSLTNANWKPESRQAGK----PKLHQQREDGYDRPR 783
++ E++ Q + ++ +AG+ P +R PR
Sbjct: 649 QKELDEIIQQGVFQITRLLKNTEAGQDGEIPNYTMRRVTQIKEPR 693
>gi|242046656|ref|XP_002400702.1| ATP-dependent RNA and DNA helicase, putative [Ixodes scapularis]
gi|215497634|gb|EEC07128.1| ATP-dependent RNA and DNA helicase, putative [Ixodes scapularis]
Length = 719
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 225/546 (41%), Positives = 328/546 (60%), Gaps = 26/546 (4%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L P F+ FP ++ + + +DL P W+P AR +RK+++H GPTNSGKT+
Sbjct: 141 LLPYFLRHARTVFP-HLECMEELQKISDLRLPANWYPDARSRQRKVVFHAGPTNSGKTHR 199
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTV 366
AL+ F+ A+ G+YC PL++LA+EVF+K N G C LLTG+E++ ++H+ACTV
Sbjct: 200 ALESFVNARSGLYCGPLKMLAVEVFNKTNEKGTPCDLLTGEERRYARPDGQPADHLACTV 259
Query: 367 EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426
EM + YDVAV+DEIQM+ D RG+AWTRALLGL A+E+HLCG+ + L +V+ I +
Sbjct: 260 EMAAVHCPYDVAVVDEIQMVRDPQRGWAWTRALLGLNAEEVHLCGEEAALPLVQGILNSV 319
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
G+E+ + Y+R PL VE + L L VR GDC+V FS+ +IF+V + IEK C V
Sbjct: 320 GEEVEVRRYKRLTPLTVENRA-LESLDQVRPGDCLVCFSKNDIFQVSLQIEKQ-GLECAV 377
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK 542
IYG LPP T+ QA+ FND + +LVA+DA+GMGLNL+I RV+FYSL K + G++
Sbjct: 378 IYGGLPPGTKLAQASKFNDPSHPCKILVATDAIGMGLNLSIGRVIFYSLVKPSLNERGER 437
Query: 543 -IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601
+ + SQ QIAGRAGR GS + G TT DDL L + L P E ++ GL P
Sbjct: 438 EMDTISTSQALQIAGRAGRFGSQFASGRATTFRPDDLPLLRQILAAPVERIEAAGLHPTA 497
Query: 602 EQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRF 660
EQ+ELFA L + + L++ F C++D S YF+C + K +A+M++ V L L R+
Sbjct: 498 EQIELFAYHLPHASLANLVDIFVSLCKVDASAYFMCNLEAFKFLADMIQHVP-LPLRARY 556
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKH 715
FC +P+N + P L+FA YS+N P++ ++ P + +L LE
Sbjct: 557 VFCCSPINQKMPFVCSMFLKFARQYSRNEPLTYEWLGRSVDWPPAVPRTLVDLAHLEGVF 616
Query: 716 QVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS------LTNANWKPESRQAGKP 769
VL +YLWLS++F ++FP A+ M ++ ++ Q L A + ESR+
Sbjct: 617 DVLDLYLWLSYRFT-DLFPDAEAVRGMQRELDLVIQQGVLSMTQLLRAEPRRESREQTAE 675
Query: 770 KLHQQR 775
+L + R
Sbjct: 676 ELSRGR 681
>gi|323451361|gb|EGB07238.1| hypothetical protein AURANDRAFT_10272 [Aureococcus anophagefferens]
Length = 480
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/478 (45%), Positives = 290/478 (60%), Gaps = 21/478 (4%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK----GIYCSPLRLLA 331
+ADL P W+P AR+ +R++IYH GPTNSGKTY+AL+ A G+Y PLRLLA
Sbjct: 3 AADLRAPEEWYPKARLSRRRVIYHGGPTNSGKTYHALEALKRADADGGGGVYAGPLRLLA 62
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+EV++++NA G YCSL TGQE++ VPF+ H +CT+EMV +DVAV+DEIQM+ R
Sbjct: 63 LEVYERLNAAGCYCSLFTGQERREVPFATHASCTIEMVPVGRRWDVAVVDEIQMIGSPDR 122
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWTRAL GL A EIH+CG +V ++C TGD + YER PL E L G
Sbjct: 123 GHAWTRALHGLDAREIHVCGALDAAALVERLCGITGDAFELKEYERLTPLTTERAHLDG- 181
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIE-KHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
V+ GDCVV FSR +I V+ IE + + CCV+YG LPPETR QQA LFND+ + +
Sbjct: 182 WTGVKKGDCVVTFSRDDIHRVRREIETANEDMKCCVVYGQLPPETRAQQARLFNDEASGY 241
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGD---------KIIPVPGSQVKQIAGRAGRR 561
DVLVASDAVGMGLNLNI RV+F + KY+G+ ++ PV VKQIAGRAGR
Sbjct: 242 DVLVASDAVGMGLNLNIGRVLFRQILKYSGELSDEALDGTRLSPVEHQLVKQIAGRAGRM 301
Query: 562 GSIYPD--GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL--SNYTFC 617
+ + G T ++ DL Y+ L P + V + GLFP E + LFA +L ++
Sbjct: 302 ATAFSSGGGGVTAMDARDLSYVRAALAAPNDAVSRAGLFPPAEILALFAAELGDADMGLG 361
Query: 618 QLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY 676
++ F E C +D S Y++C D + KV L+ L L D FC AP N+ D A+
Sbjct: 362 DVVAAFVEACDIDESLYYVCGQDEVAKVVKKLDDDIRLDLADMLLFCTAPCNLNDRFAVS 421
Query: 677 HLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
L +A + + + +PKG ++L DL +KH VL +YLWL+ +F E FP
Sbjct: 422 MLNAYARARAGGGRCGPNVRLPKGRPSKLSDLHDLCSKHNVLDLYLWLAFRFP-ETFP 478
>gi|170035747|ref|XP_001845729.1| ATP-dependent RNA helicase SUV3, mitochondrial [Culex
quinquefasciatus]
gi|167878035|gb|EDS41418.1| ATP-dependent RNA helicase SUV3, mitochondrial [Culex
quinquefasciatus]
Length = 748
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 241/591 (40%), Positives = 339/591 (57%), Gaps = 33/591 (5%)
Query: 186 EVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKK--CPDDVAQYLVWLGP 243
E+L+ + +F SN L I + A FR Y ++ P D+ L +
Sbjct: 77 EMLKMILQF-SNRREIRFLCLENGIDSNLQSQAFTSFRRYCLETDALPADLHVVLSDILQ 135
Query: 244 SDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIY 298
V +FP F+ + FP D++K+ +DL +P W+P AR + RKII+
Sbjct: 136 GAGHVDDIFPYFLRHVKQIFPHLECMDDLKKI------SDLRQPANWYPSARGINRKIIF 189
Query: 299 HCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV-P 357
H GPTNSGKTY+A++RF+ AK G+YC PL+LLA EV++K N G C L+TG+E+K P
Sbjct: 190 HSGPTNSGKTYHAMERFLTAKSGVYCGPLKLLASEVYNKSNQRGTPCDLVTGEERKFADP 249
Query: 358 FSN---HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
N H+ACTVEM S Y+VAVIDEIQ++ D RG+AWTRALLGLMA+EIH+CG+P
Sbjct: 250 LGNPSKHVACTVEMTSITTPYEVAVIDEIQLLKDVGRGWAWTRALLGLMAEEIHVCGEPG 309
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
LD+++K+C T + L ++Y+R L +E L L NVR GDC+V FS+ +I+ V
Sbjct: 310 TLDLLQKMCDTTHETLEVRNYKRLTALHIEDHA-LQTLDNVRPGDCIVCFSKNDIYTVSR 368
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
IE VIYG LPP T+ QA FND DN VLVA+DA+GMGLNL+IRRV+FYS
Sbjct: 369 EIEAR-GREVAVIYGGLPPGTKLAQAAKFNDPDNSCKVLVATDAIGMGLNLSIRRVIFYS 427
Query: 535 LSK----YNGDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF 589
+ K G+K + + SQ QIAGRAGR G + +G TT +DL L L Q
Sbjct: 428 MIKPTVNQKGEKEMDTISVSQALQIAGRAGRYGMKWDEGYVTTFKPEDLPTLKNILGQTP 487
Query: 590 EVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANML 648
+ + + GL P + +EL+A L N T L+E F +D S YF+C + K +A +
Sbjct: 488 DPLTQAGLHPTADMIELYAYHLPNATLSNLMEIFVSLSIVDDSLYFICNTEDFKFLAETI 547
Query: 649 EKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAK 703
+ V L L R+ FC AP+N + P L++A YSKN PV+ G P +
Sbjct: 548 QHVP-LPLRARYIFCCAPINRQMPFVCSMFLKYARRYSKNEPVTFDWLCNQCGWPFQLPR 606
Query: 704 NDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
+L+ LE VL +YLWLS++F ++FP K + ++ +++ Q +
Sbjct: 607 TIIDLVHLEAVFDVLDLYLWLSYRFP-DLFPDEKLVRDIQKELDDIIQQGV 656
>gi|322802403|gb|EFZ22765.1| hypothetical protein SINV_08177 [Solenopsis invicta]
Length = 730
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/551 (41%), Positives = 329/551 (59%), Gaps = 39/551 (7%)
Query: 222 FRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFP-----DEIKRFRAMI 274
F+ Y + P V Y+V A + +FP F+ + FP D++K+
Sbjct: 119 FKQYCLGTEPLPVDLYVVLSDILQGAGNIADIFPYFISHAKQIFPHIDCLDDLKKI---- 174
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
+DL P +W+P AR RKII+H GPTNSGKTY+AL+RF+ AK G+YC+PL+LL EV
Sbjct: 175 --SDLRSPASWYPLARAKNRKIIFHAGPTNSGKTYHALERFITAKSGVYCAPLKLLVAEV 232
Query: 335 FDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
F K N G C LLTG+E+K V +NH++C+VEMV+ Y+VAVIDEIQ+M D
Sbjct: 233 FHKCNERGTPCDLLTGEERKYVKGHDNAANHLSCSVEMVNLQNNYEVAVIDEIQLMRDLN 292
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWTRALLG+ ADEIHLCG+ +++V+ IC TG+++ + Y+R L +E + +
Sbjct: 293 RGWAWTRALLGIPADEIHLCGEAGAIELVKSICVSTGEDVEVRRYKRLTELEIENQA-VE 351
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
L NV GDC+V F++ +I+ V ++E VIYG+LPP T+ QA FND +N
Sbjct: 352 TLNNVMPGDCIVCFNKNDIYTVSRSLESR-GKEVAVIYGSLPPGTKLAQAAKFNDPNNSC 410
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSK--YN--GDKIIPVPG-SQVKQIAGRAGRRGSIY 565
+LVA++A+GMGLNL+IRR++FYSL + +N G+K + V S QIAGRAGR G+++
Sbjct: 411 KILVATNAIGMGLNLHIRRIIFYSLIQPTFNEKGEKEMDVMSVSAALQIAGRAGRYGTVW 470
Query: 566 PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGE 625
G TT +DL L L Q E + + GL P +Q+EL+A L N T L++ F
Sbjct: 471 DTGYVTTFKREDLPTLKNLLSQTPEPITQAGLHPTADQIELYAYHLPNSTLSNLMDIFVS 530
Query: 626 NCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
C +D S YF+C D K +A+M++ V L L R+ FC AP+N + P FA
Sbjct: 531 LCTVDDSLYFMCNIDDFKFLADMIQHV-SLPLRARYVFCCAPINRKSP-------YFARQ 582
Query: 685 YSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKA 739
YSKN ++ +G P + +L+DLE VL +YLWLS++F ++FP A+
Sbjct: 583 YSKNDAITFNWLCQHIGWPFQMPRTIIDLVDLEGVFDVLDLYLWLSYRFM-DLFPDAETV 641
Query: 740 EAMATDIAELL 750
+ ++ L+
Sbjct: 642 RDIQKELDALI 652
>gi|397629726|gb|EJK69477.1| hypothetical protein THAOC_09261, partial [Thalassiosira oceanica]
Length = 617
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/364 (50%), Positives = 250/364 (68%), Gaps = 6/364 (1%)
Query: 258 FCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFME 317
+ E E + +R M DLT+P W+P AR+ +R+I++H GPTNSGKTYNAL+R
Sbjct: 142 LLVSERRSECEHYREMESHTDLTRPWEWYPRARLDRRRIVFHAGPTNSGKTYNALERLKR 201
Query: 318 AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDV 377
A +G+Y +PLRLLA E + ++N GVYCSLLTGQE++ VPF+ H + TVE+ DE YDV
Sbjct: 202 AGRGVYLAPLRLLAAECYTELNRDGVYCSLLTGQEQRTVPFATHTSSTVELADLDEDYDV 261
Query: 378 AVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
VIDEIQM+ D RGYAW+RAL+G+ EIH+CG P +D+V+KI D+ + YER
Sbjct: 262 VVIDEIQMIQDEFRGYAWSRALMGMRCKEIHVCGGPEAVDLVKKIAKNCNDDFEVRRYER 321
Query: 438 FKPLVVEAKTLL------GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGAL 491
F L VE +L G NV+ GDCVVAF++++IF +K IE+ T+H CCVIYG+L
Sbjct: 322 FTKLAVEDSSLAASPSAKGAYSNVKKGDCVVAFAKKDIFAIKREIERDTSHKCCVIYGSL 381
Query: 492 PPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQV 551
PPE R +QA LFNDQD+++D+LVASDA+GMGLNL IRR++ S+ K NG+ I+ + S
Sbjct: 382 PPEIRTEQARLFNDQDSDYDILVASDAIGMGLNLAIRRIILNSIYKNNGETIVKLDHSSC 441
Query: 552 KQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
KQIAGRAGRR S +P+G+ TT DL YL C++ E + + GL P + LF+ QL
Sbjct: 442 KQIAGRAGRRNSPFPNGVVTTRCPSDLKYLRTCMETDIEPLARAGLVPSPPHIALFSEQL 501
Query: 612 SNYT 615
+ Y+
Sbjct: 502 TAYS 505
>gi|218193743|gb|EEC76170.1| hypothetical protein OsI_13485 [Oryza sativa Indica Group]
Length = 628
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/553 (40%), Positives = 323/553 (58%), Gaps = 58/553 (10%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK-------GIYCSPLRL 329
DLT PH W+P AR KR + H GPTNSGKT+NAL+R + G+YC PLRL
Sbjct: 61 TDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSELLMNSVGVYCGPLRL 120
Query: 330 LAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
LA EV ++N V C+L+TGQE++ + + H + TVEM Y AVIDEIQM+
Sbjct: 121 LAREVAQRLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCR 180
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+++TRALLGL +DE+H+CGDP+V+ ++++I TGD + Q+YER PL V KT L
Sbjct: 181 SRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPL-VPLKTTL 239
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
G N+++GDCVV FSRR I+ +K IE H C V+YG+LPPETR +QA +FNDQD+
Sbjct: 240 GSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSN 299
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
+VLVASDA+GMGLNLNI R++F +L K++G + +++KQIAGRAGR GS +P G
Sbjct: 300 LNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGE 359
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
T LN D L L LK P ++++ GLFP F+ + L++ F +LE+F + +L
Sbjct: 360 VTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKL 419
Query: 630 DGSYFL------------------------------------------CRHDHIKKVANM 647
YF+ C KKVA +
Sbjct: 420 SPDYFIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAMRNKKPSQLACMQYRNKKVAAI 479
Query: 648 LEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGS---AKN 704
++++ L L D++ FC +PV+IRD + L++FA +Y+K V + G+ K+
Sbjct: 480 VDELP-LGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEIFTPGTLQVPKS 538
Query: 705 DAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESR 764
+L +LE+ H+VL +Y+WLS + E+ +P + A + + + L+ + L + W+ R
Sbjct: 539 HNQLKELESIHKVLELYVWLSFRL-EDSYPDRELAASQKSICSMLIEEYLERSGWQQNGR 597
Query: 765 Q--AGKPK-LHQQ 774
+ KPK LHQ+
Sbjct: 598 KDFLQKPKRLHQE 610
>gi|222625790|gb|EEE59922.1| hypothetical protein OsJ_12550 [Oryza sativa Japonica Group]
Length = 628
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 222/553 (40%), Positives = 323/553 (58%), Gaps = 58/553 (10%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK-------GIYCSPLRL 329
DLT PH W+P AR KR + H GPTNSGKT+NAL+R + G+YC PLRL
Sbjct: 61 TDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSELLMNSVGVYCGPLRL 120
Query: 330 LAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
LA EV ++N V C+L+TGQE++ + + H + TVEM Y AVIDEIQM+
Sbjct: 121 LAREVAQRLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCR 180
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+++TRALLGL +DE+H+CGDP+V+ ++++I TGD + Q+YER PL V KT L
Sbjct: 181 SRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPL-VPLKTTL 239
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
G N+++GDCVV FSRR I+ +K IE H C V+YG+LPPETR +QA +FNDQD+
Sbjct: 240 GSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSN 299
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
+VLVASDA+GMGLNLNI R++F +L K++G + +++KQIAGRAGR GS +P G
Sbjct: 300 LNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGE 359
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
T LN D L L LK P ++++ GLFP F+ + L++ F +LE+F + +L
Sbjct: 360 VTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKL 419
Query: 630 DGSYFL------------------------------------------CRHDHIKKVANM 647
YF+ C KKVA +
Sbjct: 420 SPDYFIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAMRNKKPSQLACMQYRNKKVAAI 479
Query: 648 LEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGS---AKN 704
++++ L L D++ FC +PV+IRD + L++FA +Y+K V + G+ K+
Sbjct: 480 VDELP-LGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEIFTPGTLQVPKS 538
Query: 705 DAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESR 764
+L +LE+ H+VL +Y+WLS + E+ +P + A + + + L+ + L + W+ R
Sbjct: 539 HNQLKELESIHKVLELYVWLSFRL-EDSYPDRELAASQKSICSMLIEEYLERSGWQQNGR 597
Query: 765 Q--AGKPK-LHQQ 774
+ KPK LHQ+
Sbjct: 598 KDFLQKPKRLHQE 610
>gi|312374358|gb|EFR21928.1| hypothetical protein AND_16014 [Anopheles darlingi]
Length = 766
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 227/555 (40%), Positives = 325/555 (58%), Gaps = 32/555 (5%)
Query: 222 FRSYFIKK--CPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMI 274
FR Y ++ P D+ L + V +FP F+ + FP D++K+
Sbjct: 110 FRKYCLETDALPADLHVVLSDILQGAGHVDDIFPYFLRHVKQIFPHLECMDDLKKI---- 165
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
+DL +P W+P AR M RK+I+H GPTNSGKTY+A++RF+ AK G+YC PL+LLA EV
Sbjct: 166 --SDLRQPANWYPNARGMNRKVIFHSGPTNSGKTYHAMERFLSAKSGVYCGPLKLLASEV 223
Query: 335 FDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
++K N G C L+TG+E+K S H+ACTVEM S + Y+VAVIDEIQ++ D
Sbjct: 224 YNKSNQRGTPCDLVTGEERKFANPEGKPSAHVACTVEMTSINTPYEVAVIDEIQLLKDVG 283
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWTRA LGLMA+EIH+CG+P D+++K+C T + + ++Y+R P +E + L+
Sbjct: 284 RGWAWTRAFLGLMAEEIHVCGEPGTADLLQKLCETTHESMEVRNYKRLTPFHIEDQALI- 342
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
L NV+ GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND +N
Sbjct: 343 TLDNVQPGDCIVCFSKNDIYSVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPNNSC 401
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSK----YNGDK-IIPVPGSQVKQIAGRAGRRGSIY 565
VLVA+DA+GMGLNL+IRRV+FYS+ K G+K + + SQ QIAGRAGR G +
Sbjct: 402 KVLVATDAIGMGLNLSIRRVIFYSMIKPTMNQKGEKEMDTISVSQALQIAGRAGRYGMKW 461
Query: 566 PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGE 625
+G TT +DL L L Q E + + GL P + +EL+A L N T L+E F
Sbjct: 462 EEGFVTTFKAEDLPTLRGILAQTPEPLSQAGLHPTADMIELYAYHLPNATLSNLMEIFVS 521
Query: 626 NCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
+D S YF+C + K +A ++ V L L R+ FC AP+N P L++A
Sbjct: 522 LSTVDDSLYFMCNTEDFKFLAETIQHVP-LPLRARYIFCCAPINRNMPFVCSMFLKYARR 580
Query: 685 YSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKA 739
YS+N PV+ G P + +L+ LE VL +YLWLS++F ++FP K
Sbjct: 581 YSRNEPVTFDWLCNQCGWPFQLPRTIIDLVHLEAVFDVLDLYLWLSYRFP-DLFPDEKLV 639
Query: 740 EAMATDIAELLGQSL 754
+ ++ +++ Q +
Sbjct: 640 RDIQRELDDIIQQGV 654
>gi|221329989|ref|NP_649452.3| CG9791 [Drosophila melanogaster]
gi|251757439|sp|Q9VN03.3|SUV3_DROME RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|220902988|gb|AAF52149.3| CG9791 [Drosophila melanogaster]
gi|372466679|gb|AEX93152.1| FI17837p1 [Drosophila melanogaster]
Length = 763
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/560 (40%), Positives = 325/560 (58%), Gaps = 34/560 (6%)
Query: 218 AAGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRF 270
A G FR + I+ P D+ + + +FP F+ FP D++K+
Sbjct: 110 AFGSFRRFCIEAENLPVDLHITFSDITQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI 169
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
+DL +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LL
Sbjct: 170 ------SDLRQPANWYSNARAITRKIVFHAGPTNSGKTYHAMERYLSAKTGVYCGPLKLL 223
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQM 385
A EV++K N G C L+TG+E+K +P +NH+ACTVEM S + Y+VAVIDEIQ
Sbjct: 224 ATEVYNKANERGTPCDLVTGEERKFGISESLP-ANHVACTVEMTSVNTPYEVAVIDEIQQ 282
Query: 386 MSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEA 445
+ D RG+AWTRA LGL+ADE+H+CG+P LD+++KIC TG+ + + Y+R L VE
Sbjct: 283 IRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTGETVEVRLYDRLTELTVE- 341
Query: 446 KTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND 505
T LG L N+ GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND
Sbjct: 342 NTALGSLDNIVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFND 400
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGR 560
N V+VA+DA+GMGLNL+IRR++FYSL K + + +I + S QIAGRAGR
Sbjct: 401 PANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREIDTISVSSALQIAGRAGR 460
Query: 561 RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLL 620
+ + G T +DL L L + E +K+ GL P +Q+EL+A L + + L+
Sbjct: 461 FRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQIELYAYHLPSSSLSNLM 520
Query: 621 EKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLL 679
+ F C +D S YF+C + K +A M++ V L L R+ FC AP+N + P L
Sbjct: 521 DIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHV-ALPLRARYVFCCAPINRKMPFVCSMFL 579
Query: 680 RFASSYSKNAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
+ A YS+N P++ G P K +L+ LE V+ +YLWLS++F ++FP
Sbjct: 580 KVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYLWLSYRFM-DLFP 638
Query: 735 YAKKAEAMATDIAELLGQSL 754
A ++ E++ Q +
Sbjct: 639 EAAYVRDAQKELDEIIQQGV 658
>gi|194743614|ref|XP_001954295.1| GF18203 [Drosophila ananassae]
gi|190627332|gb|EDV42856.1| GF18203 [Drosophila ananassae]
Length = 763
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 237/611 (38%), Positives = 339/611 (55%), Gaps = 44/611 (7%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L E +N+ F REV S +G L Y+ + F G FR Y
Sbjct: 70 ELVGKLEKAELLKILNK--FTQRREVKALCSENG------LDSYLQQQAF----GSFRRY 117
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 118 CIEAENLPVDLHIIFSDIMQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 171
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EVF+K
Sbjct: 172 LRQPANWYTNARAITRKIVFHAGPTNSGKTYHAMERYLTAKSGVYCGPLKLLATEVFNKA 231
Query: 339 NALGVYCSLLTGQEKKL----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
N G C L+TG+E+K +NH+ACTVEM S + Y+VAVIDEIQ + D RG+A
Sbjct: 232 NERGTPCDLVTGEERKFGISESSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWA 291
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA LGL+A+E+H+CG+ L ++ KIC TG+ + + Y+R L VE T LG L N
Sbjct: 292 WTRAFLGLIAEEVHVCGEAGSLGLLEKICETTGETVEVRRYDRLTELTVE-NTALGSLDN 350
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
V GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND N V+V
Sbjct: 351 VVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPANSCKVMV 409
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
A+DA+GMGLNL+IRR++FYSL K + +I + S QIAGRAGR + + G
Sbjct: 410 ATDAIGMGLNLSIRRIIFYSLVKPTMNEKGEREIDTISVSSALQIAGRAGRFRTQWEHGY 469
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
T +DL L L Q + +K+ GL P +Q+EL+A L N + L++ F C +
Sbjct: 470 VTAFKPEDLQILHRILSQTPDPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTV 529
Query: 630 DGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
D S YF+C + K +A M++ V L L R+ FC AP+N + P L+ A YS+N
Sbjct: 530 DDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSRN 588
Query: 689 APVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMA 743
P++ G P K +L+ LE V+ +YLWLS++F ++FP A
Sbjct: 589 EPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYLWLSYRFM-DLFPEANNVREAQ 647
Query: 744 TDIAELLGQSL 754
++ E++ Q +
Sbjct: 648 KELDEIIQQGV 658
>gi|307106856|gb|EFN55101.1| hypothetical protein CHLNCDRAFT_135006 [Chlorella variabilis]
Length = 548
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/459 (44%), Positives = 290/459 (63%), Gaps = 14/459 (3%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL P ++FP AR ++R ++ H GPTNSGKT+ ALQ A GIYC PLRLLA +V D+
Sbjct: 21 DLGNPASFFPTARALERTVVAHLGPTNSGKTHAALQELRRAASGIYCGPLRLLAWQVHDQ 80
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+++ G+ C+L+TGQE++ + H ACT EM ST + +VAV+DEIQM++D RG+A+TR
Sbjct: 81 LSSSGLPCNLVTGQERR-DEGAAHTACTTEMASTRSVVEVAVLDEIQMIADESRGWAFTR 139
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
ALLG+ A +H+CGDP+ L ++ +I +ETGD L + YER PLV A+ L L V+
Sbjct: 140 ALLGVPARTLHVCGDPAALPLLEQIVAETGDRLEVRRYERLSPLVA-ARRPLASLSQVQR 198
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GDCVVAFSRR++ ++ IE + H CCV+YGALPP+ R+ QA+LFN F+VL ASD
Sbjct: 199 GDCVVAFSRRDVHALRQEIEGYGQHRCCVVYGALPPDARQLQASLFNTPRTGFNVLAASD 258
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577
AVGMGLNL IRR++F SLSKY+G + +++KQ+AGRAGR GS +PDG+ T +D
Sbjct: 259 AVGMGLNLAIRRIIFTSLSKYDGTAERALTTAEIKQVAGRAGRYGSRFPDGIATATTPED 318
Query: 578 LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS----- 632
L+ L L+QP E + L P Q+E+ GQ +L +F E + GS
Sbjct: 319 LERLAAALQQPSEELASAYLLPSLAQLEMLHGQHPADKLPAILRRFEEAAQ--GSLARTQ 376
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS---KNA 689
Y R++ +A ML + LSL + + F +P + D LL FA+ Y+ + +
Sbjct: 377 YRYARYEEQYTLATMLRHLP-LSLREAWAFSISPADPDDAPVASALLTFATVYAHRGRVS 435
Query: 690 PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
P +I G P A+++ EL LE H+V +Y+WL+ +F
Sbjct: 436 PAAILHG-PVHEARSEMELQQLEAAHRVHDLYIWLAFRF 473
>gi|327277996|ref|XP_003223749.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Anolis carolinensis]
Length = 795
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/538 (40%), Positives = 327/538 (60%), Gaps = 29/538 (5%)
Query: 248 VKFLFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGP 302
V LFP F+ + FP D++++ +DL P W+P AR ++RKI++H GP
Sbjct: 150 VDDLFPFFMRHAKQIFPMLECMDDLRKI------SDLRLPPNWYPEARAIQRKIVFHAGP 203
Query: 303 TNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----F 358
TNSGKTY+A+QR++ AK GIYC PL+LLA E+F K N V C L+TG+E+ LV
Sbjct: 204 TNSGKTYHAIQRYLAAKSGIYCGPLKLLAHEIFQKSNDANVPCDLVTGEERVLVDPEGRP 263
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDV 418
+ H+ACT+EM S + Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+CG+ + +++
Sbjct: 264 AAHVACTIEMCSVNTPYEVAVIDEIQMIKDPSRGWAWTRALLGLCAEEIHVCGEAAAINL 323
Query: 419 VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK 478
V ++ TG+E+ + Y+R P+ V + L L + GDC+V FS+ +I+ V IE
Sbjct: 324 VTELMYTTGEEVEVRTYKRLTPIKVLDEA-LESLDKLCPGDCIVCFSKNDIYSVSRQIEA 382
Query: 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
C VIYG+LPP T+ QA FND + ++VA+DA+GMGLNL+I+R++F SL K
Sbjct: 383 R-GLECAVIYGSLPPGTKLTQAKKFNDPGDPCKIMVATDAIGMGLNLSIKRIIFNSLVKP 441
Query: 539 N----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK 593
G+K + + SQ QI+GRAGR +++ +G TT++ DDL L E L + + +
Sbjct: 442 TVNEKGEKEMDTITTSQALQISGRAGRFSTVFKEGEVTTMHRDDLPLLKEILSKSVDPIL 501
Query: 594 KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG 653
GL P EQ+E+FA L + T L++ F ++DG YF+C D K +A+M++ +
Sbjct: 502 TAGLHPTAEQIEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNVDDFKFLADMIQHIP- 560
Query: 654 LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAEL 708
L+L R+ FC AP+N + P LL+FA +S+N P++ + P +N +L
Sbjct: 561 LNLRARYVFCTAPINKKQPYVCTSLLKFARQFSRNEPLTFDWLCRHIHWPLTPPRNIKDL 620
Query: 709 LDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQA 766
+ LE H VL +YLWLS++F ++FP A + ++ +++ + N + QA
Sbjct: 621 VHLEAVHDVLDLYLWLSYRFM-DMFPDAALVRDIQKELDDIIQIGVLNITRLIRASQA 677
>gi|321456873|gb|EFX67971.1| hypothetical protein DAPPUDRAFT_63551 [Daphnia pulex]
Length = 734
Score = 397 bits (1021), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/521 (42%), Positives = 316/521 (60%), Gaps = 31/521 (5%)
Query: 251 LFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
L P F+ + FP D++K+ +DL P W+P AR + RKI++H GPTNS
Sbjct: 100 LLPYFIRHAKQTFPHLECLDDLKKI------SDLRLPANWYPEARALTRKIVFHSGPTNS 153
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF-----SN 360
GKTY+AL+RF +K G+YC PL+LLA EV+ K N GV C L+TG+E+ S+
Sbjct: 154 GKTYHALERFFNSKSGVYCGPLKLLASEVYYKSNQRGVPCDLVTGEERNFANATDKSPSS 213
Query: 361 HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVR 420
H++CTVEMVS + Y+VAVIDEIQM+ D RG+AWTRALLG++A+E+H+CG+ + +DVV+
Sbjct: 214 HVSCTVEMVSVNTPYEVAVIDEIQMLKDPSRGWAWTRALLGVVAEEVHVCGEAAAIDVVK 273
Query: 421 KICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHT 480
+I +E+ + Y+R L++E + LG L +R GDC+V F++++IF IE
Sbjct: 274 EILMSASEEIEMRRYKRLTELIIEDGS-LGTLDKIRPGDCLVCFNKQDIFWSMRQIEA-M 331
Query: 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN- 539
C VIYG+LPP T+ QA FND D+ VLVA+DA+GMGLNLNI RV+F SL K
Sbjct: 332 GIECAVIYGSLPPGTKLAQAKKFNDPDHPCKVLVATDAIGMGLNLNIGRVIFNSLIKPTT 391
Query: 540 ---GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKV 595
G+K + + SQ QIAGRAGR G+ + G TTL +DL L L Q E + +V
Sbjct: 392 NEKGEKEMDTISTSQALQIAGRAGRYGTQFSTGYVTTLKNEDLPTLKRLLSQHPEPINQV 451
Query: 596 GLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGL 654
GL P EQ+EL+A L + L++ F LD S YF+C + K +A+M++ V L
Sbjct: 452 GLHPTAEQIELYAYHLPHANLSNLIDIFVNLSTLDDSLYFICNINDFKFLADMIQHVP-L 510
Query: 655 SLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELL 709
L R+ FC AP+N + P L+FA YS+N +S +G+P EL+
Sbjct: 511 PLRARYVFCCAPINRKIPFVCSMFLKFARQYSRNEVLSFDWLGRQIGLPFSCPNTLLELV 570
Query: 710 DLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELL 750
LE+ VL +YLWLS++F +++FP A M ++ L+
Sbjct: 571 HLESVFDVLDLYLWLSYRF-QDLFPDASLVRDMQKELDCLI 610
>gi|189240823|ref|XP_001811917.1| PREDICTED: similar to ATP-dependent RNA and DNA helicase [Tribolium
castaneum]
gi|270013711|gb|EFA10159.1| hypothetical protein TcasGA2_TC012348 [Tribolium castaneum]
Length = 742
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/500 (43%), Positives = 302/500 (60%), Gaps = 29/500 (5%)
Query: 251 LFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
+FP F+ + FP D++++ +DL P W+P AR + RKII+H GPTNS
Sbjct: 140 IFPYFLRHAKQMFPHLECMDDLRKI------SDLRTPANWYPEARALNRKIIFHAGPTNS 193
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFS----NH 361
GKT++AL+ F+ AK G+YC PL+LLA EV+ K N+ G C L+TG+E+K S H
Sbjct: 194 GKTFHALESFITAKSGVYCGPLKLLAAEVYKKSNSRGTPCDLVTGEERKYADSSGQPSTH 253
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
++CTVEM S Y+VAVIDEIQM+ D RG+AWTRA LGL+A+EIHLCG+ +D++ +
Sbjct: 254 VSCTVEMASLTAPYEVAVIDEIQMVRDHQRGWAWTRAFLGLVAEEIHLCGEAGAIDLISQ 313
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+C T +++ +HY+R L VE T LG L NV GDC+V FS+ +I+ V IE T
Sbjct: 314 LCLTTNEDIEVRHYKRLTDLKVE-DTALGSLDNVMPGDCIVCFSKNDIYSVSRGIEA-TG 371
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK---- 537
VIYG LPP T+ QA FND +N +LVA+DA+GMGLNL+IRRV+FYSL K
Sbjct: 372 KEVAVIYGGLPPGTKLAQAAKFNDPENSCKILVATDAIGMGLNLSIRRVIFYSLIKPTMN 431
Query: 538 YNGDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
G+K + + S QIAGRAGR G+ + G TT +DL L L+ E + + G
Sbjct: 432 EKGEKEMDTISVSAALQIAGRAGRYGTQWEQGFVTTFKPEDLKTLKTLLESLPEPITQAG 491
Query: 597 LFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLS 655
L P EQ+EL+A L N T L++ F +D S YF+C + K +A+M++ V L
Sbjct: 492 LHPTAEQIELYAYHLPNSTLSNLMDIFVSLSTVDDSLYFMCNVEDFKFLADMIQHVP-LP 550
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLD 710
L R+ FC AP++ + P L+F YSKN P++ +G P K +L+
Sbjct: 551 LRARYVFCCAPISKKMPFVCTMFLKFTRQYSKNEPITFDWLCRNIGWPLQPPKTIIDLVH 610
Query: 711 LETKHQVLSMYLWLSHQFKE 730
LE VL +YLWLS++F +
Sbjct: 611 LEAVFDVLDLYLWLSYRFMD 630
>gi|427779903|gb|JAA55403.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 716
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 225/560 (40%), Positives = 328/560 (58%), Gaps = 22/560 (3%)
Query: 214 FFPTAAGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFR 271
F A FR Y ++ + P D+ L + L P F++ + FP ++
Sbjct: 92 LFHQAFVSFRRYCMESEQLPADLHIIFSDLLQGGRHLDDLVPYFLQHARQIFP-HLECME 150
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
+ + +DL P W+P AR ++RK+I+H GPTNSGKT+ AL+ F + G+YC PL++LA
Sbjct: 151 ELQKISDLRHPGNWYPEARAIQRKVIFHAGPTNSGKTHAALESFHNSNTGLYCGPLKMLA 210
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDEIQMMS 387
+EVF K N G C L+TG+E++ V + H+ACTVEM + YDVAVIDEIQMM
Sbjct: 211 VEVFQKTNEKGTPCDLVTGEERRCVLPDGQPAPHVACTVEMAAVHTPYDVAVIDEIQMMR 270
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
D RG+AWTRALLGL A E+HLCG+ + + +VR + S G+EL + Y+R L +E +
Sbjct: 271 DPQRGWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSLGEELEVRKYKRLTQLTIENRA 330
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
L L ++ GDCVV F++ +I++V + IE+ C VIYG LPP T+ QA FND
Sbjct: 331 -LESLEKIQPGDCVVCFNKSDIYQVSLQIERQ-GLECAVIYGGLPPGTKLAQAQKFNDPS 388
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDKII-PVPGSQVKQIAGRAGRRG 562
+ VLVA+DA+GMGLNL+I RV+FYSL K + G++ + + SQ QIAGRAGR G
Sbjct: 389 HPCKVLVATDAIGMGLNLSIGRVIFYSLVKPSLNERGERQMDTISTSQALQIAGRAGRFG 448
Query: 563 SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEK 622
S Y G TT+ DL L + L E ++ GL P EQ+ELFA L + T L++
Sbjct: 449 SRYEVGRATTMKPQDLPALKQILAASVEQIEAAGLHPTAEQIELFAYHLPHATLANLVDI 508
Query: 623 FGENCRLD-GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
F C++D SYF+C + K +A+M++ V L L R+ FC +P+N + P L+F
Sbjct: 509 FVSLCKVDSSSYFMCNLEGFKFLADMIQHVP-LPLRARYVFCCSPINQKMPFVCSMFLKF 567
Query: 682 ASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYA 736
A YS+N ++ + P K +L+ LE VL +YLWLS++F ++FP A
Sbjct: 568 ARQYSRNEQLTCQWLERNINWPLAVPKTIMDLVHLEAVFDVLDLYLWLSYRFP-DLFPDA 626
Query: 737 KKAEAMATDIAELLGQSLTN 756
+ AM ++ ++ + + N
Sbjct: 627 EAVRAMQQELDSIIQKGVLN 646
>gi|427788961|gb|JAA59932.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 679
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/521 (41%), Positives = 315/521 (60%), Gaps = 20/521 (3%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L P F++ + FP ++ + + +DL P W+P AR ++RK+I+H GPTNSGKT+
Sbjct: 94 LVPYFLQHARQIFP-HLECMEELQKISDLRHPGNWYPEARAIQRKVIFHAGPTNSGKTHA 152
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTV 366
AL+ F + G+YC PL++LA+EVF K N G C L+TG+E++ V + H+ACTV
Sbjct: 153 ALESFHNSNTGLYCGPLKMLAVEVFQKTNEKGTPCDLVTGEERRCVLPDGQPAPHVACTV 212
Query: 367 EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426
EM + YDVAVIDEIQMM D RG+AWTRALLGL A E+HLCG+ + + +VR + S
Sbjct: 213 EMAAVHTPYDVAVIDEIQMMRDPQRGWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSL 272
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
G+EL + Y+R L +E + L L ++ GDCVV F++ +I++V + IE+ C V
Sbjct: 273 GEELEVRKYKRLTQLTIENRA-LESLEKIQPGDCVVCFNKSDIYQVSLQIERQ-GLECAV 330
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK 542
IYG LPP T+ QA FND + VLVA+DA+GMGLNL+I RV+FYSL K + G++
Sbjct: 331 IYGGLPPGTKLAQAQKFNDPSHPCKVLVATDAIGMGLNLSIGRVIFYSLVKPSLNERGER 390
Query: 543 II-PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601
+ + SQ QIAGRAGR GS Y G TT+ DL L + L E ++ GL P
Sbjct: 391 QMDTISTSQALQIAGRAGRFGSRYEVGRATTMKPQDLPALKQILAASVEQIEAAGLHPTA 450
Query: 602 EQVELFAGQLSNYTFCQLLEKFGENCRLD-GSYFLCRHDHIKKVANMLEKVQGLSLEDRF 660
EQ+ELFA L + T L++ F C++D SYF+C + K +A+M++ V L L R+
Sbjct: 451 EQIELFAYHLPHATLANLVDIFVSLCKVDSSSYFMCNLEGFKFLADMIQHVP-LPLRARY 509
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKH 715
FC +P+N + P L+FA YS+N ++ + P K +L+ LE
Sbjct: 510 VFCCSPINQKMPFVCSMFLKFARQYSRNEQLTCQWLERNINWPLAVPKTIMDLVHLEAVF 569
Query: 716 QVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
VL +YLWLS++F ++FP A+ AM ++ ++ + + N
Sbjct: 570 DVLDLYLWLSYRFP-DLFPDAEAVRAMQQELDSIIQKGVLN 609
>gi|302798687|ref|XP_002981103.1| hypothetical protein SELMODRAFT_114130 [Selaginella moellendorffii]
gi|302801642|ref|XP_002982577.1| hypothetical protein SELMODRAFT_116710 [Selaginella moellendorffii]
gi|300149676|gb|EFJ16330.1| hypothetical protein SELMODRAFT_116710 [Selaginella moellendorffii]
gi|300151157|gb|EFJ17804.1| hypothetical protein SELMODRAFT_114130 [Selaginella moellendorffii]
Length = 480
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 210/457 (45%), Positives = 282/457 (61%), Gaps = 10/457 (2%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
PHTW+P+AR M+R+II + GPTNSGKT+ ALQ A GIYC PLRLLA EV +K+N+
Sbjct: 9 PHTWYPYARTMRRRIILYVGPTNSGKTFTALQSLQRASSGIYCGPLRLLAWEVAEKLNSH 68
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQ----MMSDACRGYAWTR 397
V CSLLTGQE+ + + H A TVEM Y+ AVIDEIQ M+ + RGYA+TR
Sbjct: 69 NVPCSLLTGQERNEIEGAQHKAMTVEMADITREYECAVIDEIQARTRMIGCSKRGYAFTR 128
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
AL GL A EIHLCGDP V+ +++ + T D L + Y R PLV K L D+R +R
Sbjct: 129 ALFGLAAKEIHLCGDPCVVTLIQNLLERTQDTLEVRCYTRLSPLV-PLKEPLRDIRRIRG 187
Query: 458 GDCVVAFSRREIFEVKMAIEK-HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GDC+V+FSR EI K IEK H +C V+YG+LPPETR +QA FN D +F +LVAS
Sbjct: 188 GDCIVSFSRDEIHTYKRDIEKLHPAINCSVVYGSLPPETRTKQAERFNKADEDFSILVAS 247
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI+R++F L K++G + QVKQIAGRAGR S YP G T L
Sbjct: 248 DAIGMGLNLNIQRIIFTKLDKFDGIARCYLSVMQVKQIAGRAGRFKSKYPVGEVTCLKGS 307
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
D+ +L L P V G+FP F+Q+ L+ N+ F +LEKF L +FLC
Sbjct: 308 DIAHLHRALATPTPAVVAAGVFPTFDQIGLYCTFYPNFPFSAILEKFIATVTLSSMFFLC 367
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
++ +A ML+ + L ++ RF FC PV+ + M LL FA +Y+ N V +
Sbjct: 368 DSSNLLAIARMLDDIP-LPMDSRFLFCTCPVDKDNRIIMGALLEFARNYAVNRNVPLKRL 426
Query: 697 MPKGSAK---NDAELLDLETKHQVLSMYLWLSHQFKE 730
+ + + +L +LE+ H+VL MY+WLS++ ++
Sbjct: 427 LTPATMRVPSTQKDLAELESLHKVLDMYIWLSYRLED 463
>gi|427779183|gb|JAA55043.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 689
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/521 (41%), Positives = 315/521 (60%), Gaps = 20/521 (3%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L P F++ + FP ++ + + +DL P W+P AR ++RK+I+H GPTNSGKT+
Sbjct: 131 LVPYFLQHARQIFP-HLECMEELQKISDLRHPGNWYPEARAIQRKVIFHAGPTNSGKTHA 189
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTV 366
AL+ F + G+YC PL++LA+EVF K N G C L+TG+E++ V + H+ACTV
Sbjct: 190 ALESFHNSNTGLYCGPLKMLAVEVFQKTNEKGTPCDLVTGEERRCVLPDGQPAPHVACTV 249
Query: 367 EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426
EM + YDVAVIDEIQMM D RG+AWTRALLGL A E+HLCG+ + + +VR + S
Sbjct: 250 EMAAVHTPYDVAVIDEIQMMRDPQRGWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSL 309
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
G+EL + Y+R L +E + L L ++ GDCVV F++ +I++V + IE+ C V
Sbjct: 310 GEELEVRKYKRLTQLTIENRA-LESLEKIQPGDCVVCFNKSDIYQVSLQIERQ-GLECAV 367
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK 542
IYG LPP T+ QA FND + VLVA+DA+GMGLNL+I RV+FYSL K + G++
Sbjct: 368 IYGGLPPGTKLAQAQKFNDPSHPCKVLVATDAIGMGLNLSIGRVIFYSLVKPSLNERGER 427
Query: 543 II-PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601
+ + SQ QIAGRAGR GS Y G TT+ DL L + L E ++ GL P
Sbjct: 428 QMDTISTSQALQIAGRAGRFGSRYEVGRATTMKPQDLPALKQILAASVEQIEAAGLHPTA 487
Query: 602 EQVELFAGQLSNYTFCQLLEKFGENCRLD-GSYFLCRHDHIKKVANMLEKVQGLSLEDRF 660
EQ+ELFA L + T L++ F C++D SYF+C + K +A+M++ V L L R+
Sbjct: 488 EQIELFAYHLPHATLANLVDIFVSLCKVDSSSYFMCNLEGFKFLADMIQHVP-LPLRARY 546
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKH 715
FC +P+N + P L+FA YS+N ++ + P K +L+ LE
Sbjct: 547 VFCCSPINQKMPFVCSMFLKFARQYSRNEQLTCQWLERNINWPLAVPKTIMDLVHLEAVF 606
Query: 716 QVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
VL +YLWLS++F ++FP A+ AM ++ ++ + + N
Sbjct: 607 DVLDLYLWLSYRFP-DLFPDAEAVRAMQQELDSIIQKGVLN 646
>gi|347970020|ref|XP_309651.5| AGAP003508-PA [Anopheles gambiae str. PEST]
gi|333466653|gb|EAA05399.5| AGAP003508-PA [Anopheles gambiae str. PEST]
Length = 819
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/524 (41%), Positives = 312/524 (59%), Gaps = 30/524 (5%)
Query: 251 LFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
+FP F+ + FP D++K+ +DL +P W+P AR M RK+I+H GPTNS
Sbjct: 148 IFPYFLRHVKQIFPHLECMDDLKKI------SDLRQPANWYPSARGMNRKVIFHSGPTNS 201
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNH 361
GKTY+A++RF+ AK G+YC PL+LLA EV++K N G C L+TG+E+K S H
Sbjct: 202 GKTYHAMERFLAAKSGVYCGPLKLLASEVYNKSNQRGTACDLVTGEERKFANPEGKPSAH 261
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
+ACTVEM S + Y+VAVIDEIQ++ D RG+AWTRA LGLMA+EIH+CG+P D+++K
Sbjct: 262 VACTVEMTSINTPYEVAVIDEIQLLKDVGRGWAWTRAFLGLMAEEIHVCGEPGTADLLQK 321
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+C T + L ++Y+R PL +E + L L NV GDC+V FS+ +I+ V IE
Sbjct: 322 LCETTHESLEVRNYKRLTPLHIEEQA-LQTLDNVLPGDCIVCFSKNDIYAVSREIEAR-G 379
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK---- 537
VIYG LPP T+ QA FND +N VLVA+DA+GMGLNL+IRRV+FYS+ K
Sbjct: 380 KEVAVIYGGLPPGTKLAQAAKFNDPNNSCKVLVATDAIGMGLNLSIRRVIFYSMIKPTMN 439
Query: 538 YNGDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
G+K + + S QIAGRAGR G + +G TT +DL L L Q + + + G
Sbjct: 440 QKGEKEMDTISVSAALQIAGRAGRYGMKWEEGYVTTFKAEDLPTLKGILGQTPDPLTQAG 499
Query: 597 LFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLS 655
L P + +EL+A L N T L+E F +D S YF+C + K +A ++ V L
Sbjct: 500 LHPTADMIELYAYHLPNATLSNLMEIFVSLSTVDDSLYFMCNTEDFKFLAETIQHVP-LP 558
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLD 710
L R+ FC AP+N P L++A YS+N PV+ G P + +L+
Sbjct: 559 LRARYIFCCAPINRNMPFVCSMFLKYARRYSRNEPVTFDWLCNQCGWPFQLPRTIIDLVH 618
Query: 711 LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
LE VL +YLWLS++F ++FP K + ++ +++ Q +
Sbjct: 619 LEAVFDVLDLYLWLSYRFP-DLFPDEKLVRDIQRELDDIIQQGV 661
>gi|345309135|ref|XP_003428795.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial-like [Ornithorhynchus anatinus]
Length = 778
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/501 (42%), Positives = 307/501 (61%), Gaps = 22/501 (4%)
Query: 251 LFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
LFP F+ + FP D + R + +DL P W+P AR ++RKII+H GPTNSGKT
Sbjct: 139 LFPFFMRHAKQIFPMLDCMDDLRKI---SDLRLPPNWYPEARAIQRKIIFHSGPTNSGKT 195
Query: 309 YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF----SNHIAC 364
Y+A+QR++ AK G+YC PL+LLA E+F+K N G+ C L+TG+E+ V + H+AC
Sbjct: 196 YHAIQRYLTAKSGVYCGPLKLLAHEIFEKSNNAGIPCDLITGEERVAVDPEGRQATHVAC 255
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
TVEM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+CG+ + +++V ++
Sbjct: 256 TVEMCSVTTPYEVAVIDEIQMIRDLSRGWAWTRALLGLCAEEIHVCGEAAAINLVTELMY 315
Query: 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHC 484
TG+E+ ++Y+R P V L L N++ GDC+V FS+ +I+ V IE
Sbjct: 316 TTGEEVEVRNYKRLTPFTV-LDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIR-GLES 373
Query: 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY----NG 540
VIYG+LPP T+ QA FND D+ +LVA+DA+GMGLNL ++R++ + S G
Sbjct: 374 AVIYGSLPPGTKLTQAKKFNDPDDPCKILVATDAIGMGLNLXVKRIILXTPSSNCINEKG 433
Query: 541 DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF 600
++ P+ SQ QIAGRAG + +G TT+ +D L E L +P E + GL P
Sbjct: 434 ERDEPITTSQGLQIAGRAGEFSFKFKEGEVTTMYREDXXLLKEILNRPVEPMAAAGLHPT 493
Query: 601 FEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRF 660
EQ+E+FA QL + T L++ F ++DG YF+C D K +A+M++ + L+L R+
Sbjct: 494 AEQIEMFAYQLPDATLSNLIDIFVSLSQVDGHYFVCNVDDFKFLADMIQHIP-LNLRVRY 552
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKH 715
FC AP+N + P LL+FA YS+N P++ P KN +L+ LE H
Sbjct: 553 VFCTAPINKKQPFVCTSLLKFARQYSRNEPLTFDWLCRHTSWPLVPPKNIKDLIHLEAVH 612
Query: 716 QVLSMYLWLSHQFKEEVFPYA 736
V +YLWLS++F ++FP A
Sbjct: 613 DVFDLYLWLSYRFV-DMFPDA 632
>gi|145341985|ref|XP_001416079.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576303|gb|ABO94371.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 471
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/460 (43%), Positives = 290/460 (63%), Gaps = 6/460 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D+ P +P AR M+R+I H GPTNSGKTY A+QR A G+YC+PLRLLA E+ +
Sbjct: 10 DMRDPAAAYPLARSMRREITLHVGPTNSGKTYAAMQRLKRAGSGVYCAPLRLLAWEISEN 69
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+N GV C+L+TGQE+++ P ++H +CTVEM ++ D AVIDEIQ++SD RGYA+TR
Sbjct: 70 MNREGVPCTLVTGQERRVAPNASHDSCTVEMSDLSKVMDCAVIDEIQLLSDPLRGYAYTR 129
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
ALLGL A E+HLCGDP V+ +VR+I TGD L + Y+R PL V ++ ++ +++VR
Sbjct: 130 ALLGLPALELHLCGDPRVVPLVRRIVKSTGDLLVVKEYDRLSPLEV-SRDIVKSVKDVRK 188
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GD VAFSR ++++K +E+ + H CVIYG LPPETR +QA LFN D+ +DVL+ASD
Sbjct: 189 GDAFVAFSRSAVYDLKRELEQKSPHRACVIYGGLPPETRSRQAELFNKPDSGYDVLIASD 248
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-GLTTTLNLD 576
A+GMGLNLNI+RV+F ++SK++G ++ + G + +QIAGRAGR G Y D G+ TT
Sbjct: 249 AIGMGLNLNIKRVIFTTMSKFDGSEMRKLAGPETRQIAGRAGRYGLNYADMGIVTTTKKA 308
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
D D L L+ E + + GL P EQVE + L+ ++ +L + +
Sbjct: 309 DYDLLAAALEGELEPLTQAGLAPSLEQVEEYCELRPEAGLVGALQALSDSAKLAPHFRMR 368
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN--APVSIA 694
+ VA +LEK+ L+L D F F APV+IRD + +++FA + + A V +
Sbjct: 369 DMEESIAVAKLLEKLP-LTLADHFLFSIAPVDIRDSMVVNAMMKFARVFCTHGRAGVRLI 427
Query: 695 MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
P + EL LE+ H+ L +YLWL+ + FP
Sbjct: 428 SLPPARTPTAPHELQKLESAHKCLDLYLWLARRLP-NAFP 466
>gi|443717288|gb|ELU08439.1| hypothetical protein CAPTEDRAFT_184427 [Capitella teleta]
Length = 774
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 229/569 (40%), Positives = 330/569 (57%), Gaps = 22/569 (3%)
Query: 191 VFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA--V 248
VFR S A I + A F+ + ++ V +++ ++ A V
Sbjct: 142 VFRLLSVDKSCMEVAAEKGITGDLYRKAMLDFKRFCVESIELPVEMHIILKDIANGAGHV 201
Query: 249 KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
+ P F+E I +P ++ + + +DL+ P W+P AR +KR+IIYH GPTNSGKT
Sbjct: 202 SDMLPFFMEHAIAMYP-HLRCLEDLKKISDLSSPVHWYPAARAVKRRIIYHSGPTNSGKT 260
Query: 309 YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV-PFSN---HIAC 364
Y ALQ+F A+ G+YC PLRLLA E+F + N G C L+TG+E+ V P N H++C
Sbjct: 261 YQALQKFFRAESGVYCGPLRLLANEIFHRSNREGTPCDLVTGEERICVDPDGNPACHVSC 320
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
TVEM S D Y+VAVIDEIQM+ D RG+AWTRALLG+ A+E+H+CG+ + + +R+I
Sbjct: 321 TVEMTSLDTPYEVAVIDEIQMLRDENRGWAWTRALLGINAEEVHVCGEGTAEEFIREIAE 380
Query: 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHC 484
GD YER PL V + LGDL+ V+ GD VV F++ +I++V +E
Sbjct: 381 SVGDTFEMNTYERLTPLEVMDEP-LGDLKYVQPGDAVVCFTKADIYKVSQKLET-IGIES 438
Query: 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKII 544
VIYG+LP T+ QAN FN+ ++ VLVA+DA+GMGLNL+I+R+VFYSL+K + D
Sbjct: 439 AVIYGSLPSGTKVSQANNFNNPNHPAKVLVATDAIGMGLNLSIQRIVFYSLNKPSVDGEG 498
Query: 545 PVPGSQVK-----QIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
S +K QIAGRAGR G GL TTL +DL L + + + ++KVGL P
Sbjct: 499 NFTKSSIKPHEALQIAGRAGRFGKTKKTGLVTTLFGEDLPKLKKLMATSIQKIEKVGLQP 558
Query: 600 FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLED 658
Q+ELFA L T L++ F C LD S YF+CR D K +A+++E V L L
Sbjct: 559 AVNQIELFAYHLPQSTLSNLIDIFMTLCSLDHSRYFMCRMDSFKTLADVIEGVP-LDLTV 617
Query: 659 RFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP-----VSIAMGMPKGSAKNDAELLDLET 713
R+ FC +P++ P + +L A +SK +P ++ + P S K A+L+ LE
Sbjct: 618 RYTFCCSPISTTKPFVIAAMLMMARRFSKGSPLTEKFLTSVIEWPLKSPKTLADLVHLED 677
Query: 714 KHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
VL +YLWL ++F ++F + ++ AM
Sbjct: 678 VFDVLDLYLWLGYRFP-DMFVHMEETRAM 705
>gi|194898433|ref|XP_001978803.1| GG12286 [Drosophila erecta]
gi|190650506|gb|EDV47761.1| GG12286 [Drosophila erecta]
Length = 712
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 234/612 (38%), Positives = 341/612 (55%), Gaps = 51/612 (8%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L E +N+ F RE+ S +G L Y+ + F G FR Y
Sbjct: 24 ELSGKLEKAELLKVLNK--FTQRREIKSLCSENG------LDAYLQQQAF----GSFRRY 71
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 72 CIEAENLPVDLHITFSDITQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 125
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 126 LRQPANWYSNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKA 185
Query: 339 NALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
N G C L+TG+E+K P +NH+ACTVEM S + Y+VAVIDEIQ + D RG+
Sbjct: 186 NERGTPCDLVTGEERKFGISEGSP-ANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGW 244
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA LGL+ADE+H+CG+P L++++KIC TG+ + + Y+R L VE T LG L
Sbjct: 245 AWTRAFLGLIADEVHVCGEPGALNLLQKICETTGETVEVRRYDRLTELTVE-NTALGSLD 303
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
NV SGDC+V FS+ +I+ V IE VIYG LPP T+ QA FND N V+
Sbjct: 304 NVVSGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPTNSCKVM 362
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDG 568
VA+DA+GMGLNL+IRR++FYSL K + + +I + S QIAGRAGR + + G
Sbjct: 363 VATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREIDTISVSSALQIAGRAGRFRTQWEHG 422
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
T +DL L + L Q E +K+ GL P +Q+EL+A L + + L++ F C
Sbjct: 423 YVTAFKTEDLQTLQQILAQTPEPLKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCT 482
Query: 629 LDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
+D S YF+C + K +A M++ V L L R+ FC AP+N + P L+ A YS+
Sbjct: 483 VDDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKVARQYSR 541
Query: 688 NAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
N P++ G P K +L+ LE V+ +Y ++ ++FP A
Sbjct: 542 NEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYRFM------DLFPEAAYVRDA 595
Query: 743 ATDIAELLGQSL 754
++ E++ Q +
Sbjct: 596 QKELDEIIQQGV 607
>gi|66815921|ref|XP_641977.1| hypothetical protein DDB_G0278937 [Dictyostelium discoideum AX4]
gi|60470089|gb|EAL68070.1| hypothetical protein DDB_G0278937 [Dictyostelium discoideum AX4]
Length = 904
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/495 (42%), Positives = 302/495 (61%), Gaps = 25/495 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
+DL +PH W+ AR KR II H GPTNSGKTYNAL+R ME++ G+YC PLRLLA EV+D
Sbjct: 386 SDLREPHKWYTEARKFKRNIILHVGPTNSGKTYNALKRLMESESGVYCGPLRLLAHEVYD 445
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
K+N G+ SL+TGQ + P S H +CT+EMVSTD+M +VAVIDE Q+MSD RG +WT
Sbjct: 446 KMNENGLDTSLMTGQLRINNPNSTHSSCTIEMVSTDKMVEVAVIDEFQLMSDTIRGQSWT 505
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RA+LG+ A E+HLCGD + +++V+KIC TGD L +YER LV++ + + + +++
Sbjct: 506 RAILGIPAVELHLCGDNTAIELVKKICEITGDTLTINNYERLSTLVIDEEP-IASMGDIK 564
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GDC++ F +++I K +EK C V+YG+LPP TR QQA LFN D DVL+A+
Sbjct: 565 KGDCLICFKKKDIIFYKNYLEKQ-GLKCAVVYGSLPPTTRVQQAKLFN-TDESVDVLIAT 622
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI RV+F +L KY+G+ + S+VKQIAGRAGR G+ YP G TT
Sbjct: 623 DAIGMGLNLNIGRVIFLTLKKYDGEVDRELYASEVKQIAGRAGRFGTKYPVGSVTTFTRK 682
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFA--GQLSNYTFCQLLEKFGENCRLDGSYF 634
DL + + + P + + G+ P +Q+E F+ Q N F ++L +F EN +D YF
Sbjct: 683 DLAKIRKDWQSPNIISDRAGISPLSQQIEKFSLLPQCKNLKFSEVLTEFMENTNIDKHYF 742
Query: 635 LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV-NIRDPKAMYHLLRFASSYSKNAPVSI 693
L +A + + +S++D+F F P+ N ++ H +++A YSK+ V++
Sbjct: 743 LGNFQEFITIAQITD-FTTMSVKDKFLFSQCPLSNSKNEIPTSHYIKYALGYSKDRKVNL 801
Query: 694 AMGM-------------PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
+ P + K L LE+ + V +YLWLS+ FP
Sbjct: 802 GFDIDKINNAEKRFNESPDDTKKFSEYLSTLESYYSVTDIYLWLSN-----YFPTHFIQV 856
Query: 741 AMATDIAELLGQSLT 755
A +++EL+ Q ++
Sbjct: 857 KNAIELSELISQRIS 871
>gi|405976562|gb|EKC41064.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Crassostrea gigas]
Length = 711
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/540 (41%), Positives = 317/540 (58%), Gaps = 27/540 (5%)
Query: 251 LFPIFVEFCIEEFPD-EIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTY 309
L+P F++F + +P E ++ +I DLT+P W+ AR MKRK+I+HCGPTNSGKTY
Sbjct: 163 LYPYFIDFAKKIYPQFEFQKDLQLI--CDLTQPANWYAEARRMKRKMIFHCGPTNSGKTY 220
Query: 310 NALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK--LVP--FSNHIACT 365
+AL+ FM AK G+YC PLRLLA+EVF+K V C L+TG+E++ P + H++CT
Sbjct: 221 HALKAFMAAKSGVYCGPLRLLAVEVFNKCLENNVPCDLITGEERRHHFGPDRPAAHVSCT 280
Query: 366 VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
VEM ST YDVAVIDEIQM+ D RG AWTR LLGL A EIHLCG+ + +++V++I +
Sbjct: 281 VEMTSTTTEYDVAVIDEIQMLRDMERGGAWTRVLLGLCAREIHLCGEEAAVNLVKRIVNT 340
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCC 485
TGD L + YER L + L+ L+ V +GDC+V FS+R I++V + +EK H+
Sbjct: 341 TGDTLEVRKYERLNRLRFDNNPLMS-LKEVTAGDCIVCFSKRTIYKVCIELEK-LGHNVA 398
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY----NGD 541
VIYG+LPP T+ QA FND + VLVA+DA+GMG+NL I+R++F + K NGD
Sbjct: 399 VIYGSLPPATKLAQAQKFNDPKDPCKVLVATDAIGMGINLKIKRIIFLEIQKLTRDENGD 458
Query: 542 KIIP-VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF 600
+P Q KQIAGRAGR GS GL T + L E ++Q E ++ GL P
Sbjct: 459 LNYSFIPTHQAKQIAGRAGRFGSGENVGLVTAHTEKKMIELKEIIQQDLEDIQAAGLLPT 518
Query: 601 FEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDR 659
EQ+E F L N++ +L F ++ YFLC ++ K++A +++ + L L R
Sbjct: 519 VEQLEQFYFYLPNFSMRDILGIFQYMSTVNSDMYFLCGLENFKELATLIDHID-LPLRVR 577
Query: 660 FNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS-----IAMGMPKGSAKNDAELLDLETK 714
+ FC APV+++ P +FA SYS P+ + P K L LE
Sbjct: 578 YQFCLAPVSVKSPFLSTLFTKFARSYSNGTPIDCKWLLLQTDYPWILPKTIKSLAKLEEV 637
Query: 715 HQVLSMYLWLSHQF------KEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGK 768
H+++ MYLWLS +F +E V K+ E + + E LG L P ++ GK
Sbjct: 638 HEIMDMYLWLSFRFEEIFCDRESVRGVQKQLEEVIEEGVEKLGVLLAQGTNHPPAKGKGK 697
>gi|225432734|ref|XP_002279035.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 572
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/498 (41%), Positives = 314/498 (63%), Gaps = 19/498 (3%)
Query: 243 PSDDAVKFLFPIFVEFCIEEFPDEIKRFRAM-----IESADLTKPHTWFPFARVMKRKII 297
P ++ F I V C + I++F + ++ DLT PHTW+P AR RK+I
Sbjct: 30 PFHRHLELRFRILVGVC-----NRIRQFSSSSSTSKLDFMDLTHPHTWYPNARRKSRKVI 84
Query: 298 YHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357
H GPTNSGKT++AL+R + GIYC PLRLLA EV ++N V C ++TGQE++ +
Sbjct: 85 MHVGPTNSGKTHHALKRLESSSSGIYCGPLRLLAWEVAKRLNKANVPCDMITGQEREEID 144
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLD 417
+ H A TVEM Y AVIDEIQM+ RG+++TRALLG+ DE+HLCGD S +
Sbjct: 145 GAKHKAMTVEMADVTSDYHCAVIDEIQMLGCRTRGFSFTRALLGISTDELHLCGDVSSVP 204
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
+++ I TGD+ Q+YER PLV L ++++GDC+V FSRR+I+++K IE
Sbjct: 205 LIQGILKVTGDDFEVQYYERLSPLV-PLNVPLRSFSDIQTGDCIVTFSRRQIYKLKRQIE 263
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
H C V+YG+LPPETR +QA +FND +EFDVLVASDA+GMGLNLNI R++F +L K
Sbjct: 264 NGGKHLCSVVYGSLPPETRTRQATMFNDATSEFDVLVASDAIGMGLNLNISRIIFSTLKK 323
Query: 538 YNG--DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKV 595
++G ++ + VP ++KQIAGRAGR GS +PDG T +N+ DL L LK V+++
Sbjct: 324 FDGIEERDLTVP--EIKQIAGRAGRFGSKFPDGEVTCMNVKDLPLLHSSLKSLSPVLERA 381
Query: 596 GLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLS 655
GLFP F+ + + + + Q+LE F +N +L +YF+ + + KVA +++++ L
Sbjct: 382 GLFPTFDLLFMHSRFHPTKSLYQMLEHFVDNAKLSSNYFIADCEEMLKVAAIVDELP-LG 440
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGS---AKNDAELLDLE 712
L D++ F +PV++ + + L++FA +Y+K V + G+ K+ + L +LE
Sbjct: 441 LHDKYLFVISPVDMNNDISSQGLIQFAQTYAKKGIVRLREIFTPGTLQVPKSHSALKELE 500
Query: 713 TKHQVLSMYLWLSHQFKE 730
+ +QVL +Y+WLS + ++
Sbjct: 501 SIYQVLDLYVWLSFRLED 518
>gi|125777467|ref|XP_001359616.1| GA22038 [Drosophila pseudoobscura pseudoobscura]
gi|121989826|sp|Q295E6.1|SUV3_DROPS RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|54639364|gb|EAL28766.1| GA22038 [Drosophila pseudoobscura pseudoobscura]
Length = 762
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 240/645 (37%), Positives = 349/645 (54%), Gaps = 55/645 (8%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE S +G L Y+ + F G FR Y
Sbjct: 70 ELVGKLEKSELLKILNK--FTQRRETKSLCSENG------LDSYLQQQAF----GSFRRY 117
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 118 CIEAENLPVDLHIIFSDIMQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 171
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 172 LRQPANWYTNARALTRKIVFHSGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKA 231
Query: 339 NALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
N G C L+TG+E+K P +NH+ACTVEM S + Y+VAVIDEIQ + D RG+
Sbjct: 232 NERGTPCDLVTGEERKFGISDNSP-ANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGW 290
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA LGL+ADE+H+CG+ L++++KIC TG+ + + Y+R L VE + LG L
Sbjct: 291 AWTRAFLGLIADEVHVCGEAGALELLQKICETTGETVEVRRYDRLTELTVE-DSALGSLD 349
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
NV GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND N V+
Sbjct: 350 NVMPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPANSCKVM 408
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDG 568
VA+DA+GMGLNL+IRR++FYSL K + +I + S QIAGRAGR + + G
Sbjct: 409 VATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREIDTISVSSALQIAGRAGRFRTQWEHG 468
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
T +DL L L Q E +K+ GL P +Q+EL+A L N + L++ F C
Sbjct: 469 YVTAFKSEDLQTLQRILAQTPEPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCT 528
Query: 629 LDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
+D S YF+C + K +A M++ V L L R+ FC AP+N + P L+ A YS+
Sbjct: 529 VDDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 587
Query: 688 NAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
N P++ G P K +L+ LE+ V+ +Y ++ ++FP A
Sbjct: 588 NEPITFEFIKSNCGWPFKLPKTILDLVHLESVFDVMDLYRFM------DLFPEAGNVREA 641
Query: 743 ATDIAELLGQ---SLTNANWKPESRQAGK-PKLHQQREDGYDRPR 783
++ E++ Q +T E+ Q G+ P +R PR
Sbjct: 642 QKELDEIIQQGVFQITRLLKNTEASQEGETPNYSMRRVTHVKEPR 686
>gi|195568145|ref|XP_002102078.1| GD19716 [Drosophila simulans]
gi|194198005|gb|EDX11581.1| GD19716 [Drosophila simulans]
Length = 758
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 230/619 (37%), Positives = 342/619 (55%), Gaps = 48/619 (7%)
Query: 164 PVEVFGELRSTEKGAKIN--RSDFEVLREVFRFFSN---SGWAANQALAVYIGKSFFPTA 218
PV+V + S + G++++ E+L+ + +F L Y+ + F
Sbjct: 55 PVQVHANMDSEDVGSELSGKLEKAELLKILNKFTQRREIKSLCNENGLDAYLQQQAF--- 111
Query: 219 AGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFR 271
G FR + I+ P D+ + + +FP F+ FP D++K+
Sbjct: 112 -GSFRRFCIEAENLPVDLHITFSDITQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI- 169
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
+DL +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA
Sbjct: 170 -----SDLRQPANWYSNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLA 224
Query: 332 MEVFDKVNALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
EV++K N G C L+TG+E+K P +NH+ACTVEM S + Y+VAVIDEIQ +
Sbjct: 225 TEVYNKANERGTPCDLVTGEERKFGISENSP-ANHVACTVEMTSVNTPYEVAVIDEIQQI 283
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
D RG+AWTRA LGL+ADE+H+CG+P LD+++KIC TG+ + + Y+R L VE
Sbjct: 284 RDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTGETVEVRRYDRLTELTVE-N 342
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
T LG L N+ GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND
Sbjct: 343 TALGSLDNIVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDP 401
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRR 561
N V+VA+DA+GMGLNL+IRR++FYSL K + + +I + S QIAGRAGR
Sbjct: 402 ANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREIDTISVSSALQIAGRAGRF 461
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLE 621
+ + G T +DL L L Q E +K+ GL P +Q+EL+A L + + L++
Sbjct: 462 RTQWEHGYVTAFKSEDLQTLQRILAQTPEPIKQAGLHPTADQIELYAYHLPSSSLSNLMD 521
Query: 622 KFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
F C +D S YF+C + K +A M++ V L L R+ FC AP+N + P L+
Sbjct: 522 IFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLK 580
Query: 681 FASSYSKNAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPY 735
A YS+N P++ G P K +L+ LE V+ +Y ++ ++FP
Sbjct: 581 VARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYRFM------DLFPE 634
Query: 736 AKKAEAMATDIAELLGQSL 754
A ++ E++ Q +
Sbjct: 635 AAYVRDAQKELDEIIQQGV 653
>gi|440793632|gb|ELR14811.1| helicase conserved Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 857
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/473 (45%), Positives = 286/473 (60%), Gaps = 44/473 (9%)
Query: 268 KRFRAMIESADLTKPHTWFPFARVMK--RKIIYHCGPTNSGK--------TYNALQRFME 317
+ FR M + DL PH W+P AR + R+I+ H GPTN T+ AL R
Sbjct: 279 RTFRRM--ATDLRHPHAWYPLARALPGGRRIVLHVGPTNRHAHARAFPSLTHEALTRLAA 336
Query: 318 AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDV 377
++ G+YC PLRLLA EVF ++N GV CSLLTGQ P + H+ACTVEM DV
Sbjct: 337 SRSGVYCGPLRLLAEEVFRRMNKEGVACSLLTGQRVVTDPTARHLACTVEMA------DV 390
Query: 378 AVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
A M+ D RG+AWTRALLGL A E+HLCG+ S++ +V+KIC +TG+ LH HY R
Sbjct: 391 AR----HMLGDQDRGWAWTRALLGLPAAEVHLCGNESIVPLVQKICQDTGERLHVHHYTR 446
Query: 438 FKPLVVEAKTLLGD--LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
PLVV + T LG +++R+GDCVVAFSR +I +K IE++T H CCV+YG LPP+T
Sbjct: 447 LSPLVV-SDTPLGRKWYKSLRAGDCVVAFSRADIHTLKREIERNTRHRCCVVYGNLPPQT 505
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R A LFND +E++VLVASDA+GMGLNLNI RVVF +L K++G K + S++KQIA
Sbjct: 506 R---AELFNDPASEYEVLVASDAIGMGLNLNISRVVFSTLHKFDGHKRRLLTDSEIKQIA 562
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615
GRAGR SI+P G T + DL + L + E + GL P FEQV +F+
Sbjct: 563 GRAGRYRSIFPTGEVTAFDGADLPRIRRALLRELEPLPSAGLAPTFEQVSMFSRVYPQSP 622
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
F +LL++ + YFLC +D VA ++E V LSL +RF F AP
Sbjct: 623 FYELLDELTLKAAVSSHYFLCGNDDRVSVAKLIESVP-LSLRERFKFSIAP--------- 672
Query: 676 YHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
FA+S++ V + + +G +K+ L +LE+ H VL +YLWLS++F
Sbjct: 673 -----FANSHASEGEVEMDLRPERGDSKS-GRLAELESFHHVLDLYLWLSYRF 719
>gi|195156822|ref|XP_002019295.1| GL12317 [Drosophila persimilis]
gi|194115886|gb|EDW37929.1| GL12317 [Drosophila persimilis]
Length = 764
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 239/645 (37%), Positives = 349/645 (54%), Gaps = 55/645 (8%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE S +G L Y+ + F G FR Y
Sbjct: 70 ELVGKLEKSELLKILNK--FTQRRETKSLCSENG------LDSYLQQQAF----GSFRRY 117
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 118 CIEAENLPVDLHIIFSDIMQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 171
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 172 LRQPANWYTNARALTRKIVFHSGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKA 231
Query: 339 NALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
N G C L+TG+E+K P +NH+ACTVEM S + Y+VAVIDEIQ + D RG+
Sbjct: 232 NERGTPCDLVTGEERKFGISDNSP-ANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGW 290
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA LGL+ADE+H+CG+ L++++KIC TG+ + + Y+R L VE + LG L
Sbjct: 291 AWTRAFLGLIADEVHVCGEAGALELLQKICETTGETVEVRRYDRLTELTVE-DSALGSLD 349
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
NV GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND N V+
Sbjct: 350 NVMPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPANSCKVM 408
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDG 568
VA+DA+GMGLNL+IRR++FYSL K + +I + S QIAGRAGR + + G
Sbjct: 409 VATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREIDTISVSSALQIAGRAGRFRTQWEHG 468
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
T +DL L L Q + +K+ GL P +Q+EL+A L N + L++ F C
Sbjct: 469 YVTAFKSEDLQTLQRILAQTPDPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCT 528
Query: 629 LDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
+D S YF+C + K +A M++ V L L R+ FC AP+N + P L+ A YS+
Sbjct: 529 VDDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 587
Query: 688 NAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
N P++ G P K +L+ LE+ V+ +Y ++ ++FP A
Sbjct: 588 NEPITFEFIKSNCGWPFKLPKTILDLVHLESVFDVMDLYRFM------DLFPEAGNVREA 641
Query: 743 ATDIAELLGQ---SLTNANWKPESRQAGK-PKLHQQREDGYDRPR 783
++ E++ Q +T E+ Q G+ P +R PR
Sbjct: 642 QKELDEIIQQGVFQITRLLKNTEASQEGETPNYSMRRVTHVKEPR 686
>gi|308491142|ref|XP_003107762.1| hypothetical protein CRE_12568 [Caenorhabditis remanei]
gi|308249709|gb|EFO93661.1| hypothetical protein CRE_12568 [Caenorhabditis remanei]
Length = 721
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 210/539 (38%), Positives = 320/539 (59%), Gaps = 31/539 (5%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQ----YLVWLGPSDDAVK---FLFPIFVEFCIEE 262
I F + FR Y PDD++ L+ L VK L+P F++ +
Sbjct: 100 INDKLFMRSFKSFREYC---TPDDLSSVDPALLILLSDISKGVKDCEMLYPFFLDHSKQV 156
Query: 263 FP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK 320
FP + + R + +DLT+PH W+P AR + RKI +H GPTNSGKTY+AL+RF EAK
Sbjct: 157 FPHLEAMDDLRII---SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKS 213
Query: 321 GIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYD 376
++C PL+LLA EVF + NALG+ C L+TG+E++ S H++ TVEM+ST +
Sbjct: 214 AVFCGPLKLLASEVFTRTNALGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVE 273
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +D+V+K+ G+ + ++Y+
Sbjct: 274 VVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEIRYYD 333
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL + K + N+ GDC+V FS++ +F +E++ VIYG LPP T+
Sbjct: 334 RKSPLTIADKA-IESYSNIEPGDCIVCFSKKAVFFNSKKLEEN-GIKPAVIYGDLPPGTK 391
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QA FND D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +++P + QIAG
Sbjct: 392 LAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--ELLPTYAAL--QIAG 447
Query: 557 RAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTF 616
RAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++Q+E F+ L +F
Sbjct: 448 RAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPIANVGIAPTYDQIETFSFHLPQASF 507
Query: 617 CQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY 676
+LL+ F C + +F+C ++++A ++++V L L+ R+ FC +P+N D +
Sbjct: 508 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVP-LPLKVRYTFCTSPLNTDDKRTAA 566
Query: 677 HLLRFASSYSKNAPVSIAMGM-----PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
++ A ++ ++ M P A +EL LE +++L Y+WLS +F +
Sbjct: 567 VFVKMARRFATGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEILDQYMWLSMRFPD 625
>gi|328705328|ref|XP_001949841.2| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Acyrthosiphon pisum]
Length = 767
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 215/525 (40%), Positives = 308/525 (58%), Gaps = 30/525 (5%)
Query: 251 LFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
+ P F+ + FP D++K+ +DL P W+P AR + RKII+H GPTNS
Sbjct: 140 ILPYFLRHAKQMFPHLECMDDLKKI------SDLRSPANWYPEARAINRKIIFHAGPTNS 193
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN----H 361
GKTY+AL++++ + G+YC PL+LLA EV+ K N G C L+TG+E+K N H
Sbjct: 194 GKTYHALEKYLSSNSGVYCGPLKLLATEVYRKSNERGTPCDLVTGEERKFADEKNEASKH 253
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
++CTVEM + + YD+AVIDEIQMM D RG+AWTRALLGL+A+EIH+CG+ +D+V+
Sbjct: 254 VSCTVEMANVNTPYDIAVIDEIQMMKDPSRGWAWTRALLGLVANEIHICGEEGAVDLVKG 313
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+ TG+++ Y+R L VE + + L N+ GDC+V FS+ +++ V IE
Sbjct: 314 LMITTGEDVQVCRYKRLTELTVE-NSAVCTLDNIVPGDCIVCFSKNDVYTVSRGIESR-G 371
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK---- 537
VIYG LPP T+ QA FND N VLVA+DA+GMGLNL+IRRV+FYSL K
Sbjct: 372 IEVAVIYGGLPPNTKLAQAQKFNDPKNSCSVLVATDAIGMGLNLSIRRVIFYSLIKPTLN 431
Query: 538 YNGDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
G+K + + SQ QIAGRAGR G+ Y G TT DL L L + E + K G
Sbjct: 432 EKGEKEMDTISVSQALQIAGRAGRYGTQYEKGCVTTFKPQDLPTLRNILSEKPEPILKAG 491
Query: 597 LFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLS 655
L P +Q+EL+A L N T L++ F +D S YF+C + K +A+M++ V L
Sbjct: 492 LHPTADQIELYAYHLPNSTLSNLVDIFISLSTVDDSLYFMCNIEDFKFLADMIQHVP-LP 550
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLD 710
L R+ FC AP+N + P L++A YSKN ++ +G P K +L+
Sbjct: 551 LRARYVFCCAPINRKMPFVCTMFLKYARQYSKNESITFDWLCKHIGWPFTIPKTIIDLVH 610
Query: 711 LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLT 755
LE VL +YLW S++F ++F A M +++ +++ Q +
Sbjct: 611 LEAVFDVLDLYLWFSYRF-SDLFLEANLVRDMQSELDDIIEQGVV 654
>gi|255552101|ref|XP_002517095.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223543730|gb|EEF45258.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 547
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 207/496 (41%), Positives = 304/496 (61%), Gaps = 31/496 (6%)
Query: 274 IESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAME 333
I+ DLT PH+W+P AR RK+ H GPTNSGKT++AL+R + GIYC PLRLLA E
Sbjct: 60 IDFTDLTCPHSWYPSARKKHRKVTLHVGPTNSGKTHHALKRLASSPSGIYCGPLRLLAWE 119
Query: 334 VFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
V +K+N V C L+TGQE++ V + H A TVEM Y AV+DEIQM+ RG+
Sbjct: 120 VANKLNKGQVPCDLITGQEREEVDGAKHKAVTVEMADVTSDYSCAVVDEIQMVGCKTRGF 179
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
++TRALLG+ ADE+HLCGDP+ + ++++I TGD
Sbjct: 180 SFTRALLGISADELHLCGDPAAVPLIQEILKVTGD------------------------- 214
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
++++GDC+V FSRREI+ +K IE H C V+YG+LPPETR +QA +FND +EFDVL
Sbjct: 215 DIKTGDCIVTFSRREIYRLKKIIESAGKHLCSVVYGSLPPETRTRQATMFNDASSEFDVL 274
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
VASDA+GMGLNLNI R++F ++ K++G ++ + ++KQIAGRAGR GS YP G T L
Sbjct: 275 VASDAIGMGLNLNISRIIFSTMKKFDGVEMRYLTVPEIKQIAGRAGRYGSNYPAGEVTCL 334
Query: 574 NLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSY 633
+ DDL L L+ P ++ GLFP F+ + +++ Q+LE F EN +L +Y
Sbjct: 335 DADDLSLLHSSLESPSPALESAGLFPTFDLMFMYSRLHPKKGLYQILEHFVENAKLSPNY 394
Query: 634 FLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI 693
F+ + + KVA +++++ LSL D++ FC +PV++ D + L +FA +Y+K V +
Sbjct: 395 FIADCEEVLKVAAVIDEMP-LSLNDKYLFCISPVDMNDEISSQGLTQFAENYAKKGIVRL 453
Query: 694 AMGMPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELL 750
G+ K L +LE+ H+VL +Y+WLS++ E+ FP + A + + L+
Sbjct: 454 KEIFTPGTLQVPKTQTALKELESVHKVLDLYVWLSYRL-EDSFPDRELAASQKAICSLLI 512
Query: 751 GQSLTNANW-KPESRQ 765
+ L W KP + +
Sbjct: 513 EEFLERLGWQKPRTTK 528
>gi|430811577|emb|CCJ30963.1| unnamed protein product [Pneumocystis jirovecii]
Length = 569
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/543 (39%), Positives = 314/543 (57%), Gaps = 41/543 (7%)
Query: 245 DDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTN 304
D A+K F F+ P EI R +++ +D+ P WFP AR ++R H GPTN
Sbjct: 35 DKALKKSFLTFLMVKKLSVP-EINRQKSI---SDMRYPSEWFPNARAIERSWYLHIGPTN 90
Query: 305 SGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP--FSNHI 362
SGKTY AL++ +A+ G + PLRLLA E+FDK+ G+ C+L+TG+E+K++ + HI
Sbjct: 91 SGKTYQALKKLEKARSGWFAGPLRLLAHEIFDKMMKKGIVCNLITGEEQKIIDKNAALHI 150
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEMV+ D++ D+ VIDE+QM++D RG+AWT+ LLG+ A EIHLCG+ S ++++ KI
Sbjct: 151 S-TVEMVNLDKLMDIIVIDEVQMIADPHRGWAWTQVLLGVQASEIHLCGEESSVELILKI 209
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
G+++ HY+R PL ++L GDL V SGDC+V FSRR+IF +K IE+ T
Sbjct: 210 AKSMGEKVKIYHYKRLNPLEPLKQSLYGDLTKVESGDCIVTFSRRDIFSLKKKIEEKTGQ 269
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
C V YG LPPETR +QA LFND +N++ VLVASDA+GMGLNLNIRR++F L K+NG K
Sbjct: 270 RCAVAYGGLPPETRNEQARLFNDPNNDYHVLVASDAIGMGLNLNIRRIIFERLKKWNGIK 329
Query: 543 IIPVPGSQVKQIAGRAGRRGSI---------YPDGLTTTLNLDDLDYLIECLKQPFEVVK 593
+P+P SQ+KQIAGRAGR I G T+L D+ L L QP +++K
Sbjct: 330 HLPIPVSQIKQIAGRAGRYKFIPTQNTSESSAAKGYVTSLQQKDIKSLHIALSQPIQMLK 389
Query: 594 KVGLFPFFEQVELFAGQLSNYTFCQL-LEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQ 652
K LFP E FA T L +++ + + G Y + + + +LE++
Sbjct: 390 KASLFPPLHIQESFASFFQPGTSLSLIIKRLKQLSKTTGFYIISDTTQQQNILELLEQIN 449
Query: 653 GLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKG---SAKNDAELL 709
L++ +R APVN++D L FA+ I +G PK + D E L
Sbjct: 450 NLTVSERLILSAAPVNLKDSGVKSAFLAFAT--------IIGLGKPKNILEIPEVDLECL 501
Query: 710 D------------LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNA 757
D LET H+ L ++LWLS +F + + + + + + ++L+
Sbjct: 502 DFEFDLELKQLERLETLHKTLLLFLWLSTRF-PSILLSGPECQDIKKECEHYINKNLSKI 560
Query: 758 NWK 760
N+K
Sbjct: 561 NYK 563
>gi|115532784|ref|NP_001040912.1| Protein C08F8.2, isoform b [Caenorhabditis elegans]
gi|82465144|emb|CAJ43433.1| Protein C08F8.2, isoform b [Caenorhabditis elegans]
Length = 719
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/493 (40%), Positives = 304/493 (61%), Gaps = 21/493 (4%)
Query: 249 KFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSG 306
+ L+P F++ + FP + + R + +DLT+PH W+P AR + RKI +H GPTNSG
Sbjct: 143 EMLYPFFLDHAKQVFPHLEAMDDLRII---SDLTRPHNWYPEARSVTRKIFFHAGPTNSG 199
Query: 307 KTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHI 362
KTY+AL+RF EAK ++C PL+LLA EVF + N LG+ C L+TG+E++ S H+
Sbjct: 200 KTYHALKRFGEAKSAVFCGPLKLLAAEVFHRTNELGIPCDLVTGEERRFAKDNHHPSQHL 259
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEM+ST +VAVIDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +D+V+K+
Sbjct: 260 SSTVEMLSTQMRVEVAVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKL 319
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
G+ + ++YER PL + K + N+ GDC+V FS+R IF +E++
Sbjct: 320 LEPIGETVEVRYYERKSPLAIADKA-IESYSNIEPGDCIVCFSKRSIFFNSKKLEEN-GI 377
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
VIYG LPP T+ QA FND D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +
Sbjct: 378 KPAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--E 435
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
++P + QIAGRAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++
Sbjct: 436 LLPTYAAL--QIAGRAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYD 493
Query: 603 QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
Q+E F+ L +F +LL+ F C + +F+C ++++A +++++ L L+ R+ F
Sbjct: 494 QIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQIP-LPLKVRYTF 552
Query: 663 CFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQV 717
C +P+N D + ++ A +S ++ + P A EL LE +++
Sbjct: 553 CTSPLNTEDKRTSAVFVKMARRFSTGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEI 612
Query: 718 LSMYLWLSHQFKE 730
L Y+WLS +F +
Sbjct: 613 LDQYMWLSMRFPD 625
>gi|115532782|ref|NP_001040911.1| Protein C08F8.2, isoform a [Caenorhabditis elegans]
gi|74962468|sp|Q17828.2|SUV3_CAEEL RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|3874155|emb|CAA97429.1| Protein C08F8.2, isoform a [Caenorhabditis elegans]
Length = 721
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/493 (40%), Positives = 304/493 (61%), Gaps = 21/493 (4%)
Query: 249 KFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSG 306
+ L+P F++ + FP + + R + +DLT+PH W+P AR + RKI +H GPTNSG
Sbjct: 145 EMLYPFFLDHAKQVFPHLEAMDDLRII---SDLTRPHNWYPEARSVTRKIFFHAGPTNSG 201
Query: 307 KTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHI 362
KTY+AL+RF EAK ++C PL+LLA EVF + N LG+ C L+TG+E++ S H+
Sbjct: 202 KTYHALKRFGEAKSAVFCGPLKLLAAEVFHRTNELGIPCDLVTGEERRFAKDNHHPSQHL 261
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEM+ST +VAVIDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +D+V+K+
Sbjct: 262 SSTVEMLSTQMRVEVAVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKL 321
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
G+ + ++YER PL + K + N+ GDC+V FS+R IF +E++
Sbjct: 322 LEPIGETVEVRYYERKSPLAIADKA-IESYSNIEPGDCIVCFSKRSIFFNSKKLEEN-GI 379
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
VIYG LPP T+ QA FND D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +
Sbjct: 380 KPAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--E 437
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
++P + QIAGRAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++
Sbjct: 438 LLPTYAAL--QIAGRAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYD 495
Query: 603 QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
Q+E F+ L +F +LL+ F C + +F+C ++++A +++++ L L+ R+ F
Sbjct: 496 QIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQIP-LPLKVRYTF 554
Query: 663 CFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQV 717
C +P+N D + ++ A +S ++ + P A EL LE +++
Sbjct: 555 CTSPLNTEDKRTSAVFVKMARRFSTGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEI 614
Query: 718 LSMYLWLSHQFKE 730
L Y+WLS +F +
Sbjct: 615 LDQYMWLSMRFPD 627
>gi|268536316|ref|XP_002633293.1| Hypothetical protein CBG06022 [Caenorhabditis briggsae]
Length = 721
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/493 (40%), Positives = 306/493 (62%), Gaps = 21/493 (4%)
Query: 249 KFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSG 306
+ L+P F++ + FP + + R + +DLT+PH W+P AR + RKI +H GPTNSG
Sbjct: 145 EMLYPFFLDHSKQVFPHLEAMDDLRII---SDLTRPHNWYPEARSIIRKIFFHAGPTNSG 201
Query: 307 KTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHI 362
KTY+AL+RF EAK ++C PL+LLA EVF++ NALG+ C L+TG+E++ S H+
Sbjct: 202 KTYHALKRFGEAKSAVFCGPLKLLATEVFNRTNALGIPCDLVTGEERRFAKDNHHPSQHL 261
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEM+ST +V VIDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +++V+K+
Sbjct: 262 SSTVEMLSTQMRVEVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAINIVKKL 321
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
G+ + ++Y+R PL + A + N+ GDC+V FS+R +F +E++
Sbjct: 322 LEPIGETVEVRYYDRKSPLTI-ADRAIESYSNIEPGDCIVCFSKRAVFFNSKKLEEN-GI 379
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
VIYG LPP T+ QA FND D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +
Sbjct: 380 KPAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--E 437
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
++P + QIAGRAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++
Sbjct: 438 LLPTYAAL--QIAGRAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPITNVGIAPTYD 495
Query: 603 QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
Q+E F+ L +F +LL+ F C + +F+C ++++A ++++V L L+ R+ F
Sbjct: 496 QIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVP-LPLKVRYTF 554
Query: 663 CFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGM-----PKGSAKNDAELLDLETKHQV 717
C +P+N D + ++ A ++ ++ M P A +EL LE ++V
Sbjct: 555 CTSPLNTDDKRTAAVFVKMARRFATGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEV 614
Query: 718 LSMYLWLSHQFKE 730
L Y+WLS +F +
Sbjct: 615 LDQYMWLSMRFPD 627
>gi|269849717|sp|Q61SU7.3|SUV3_CAEBR RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
Length = 721
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/493 (40%), Positives = 306/493 (62%), Gaps = 21/493 (4%)
Query: 249 KFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSG 306
+ L+P F++ + FP + + R + +DLT+PH W+P AR + RKI +H GPTNSG
Sbjct: 143 EMLYPFFLDHSKQVFPHLEAMDDLRII---SDLTRPHNWYPEARSIIRKIFFHAGPTNSG 199
Query: 307 KTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHI 362
KTY+AL+RF EAK ++C PL+LLA EVF++ NALG+ C L+TG+E++ S H+
Sbjct: 200 KTYHALKRFGEAKSAVFCGPLKLLATEVFNRTNALGIPCDLVTGEERRFAKDNHHPSQHL 259
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEM+ST +V VIDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +++V+K+
Sbjct: 260 SSTVEMLSTQMRVEVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAINIVKKL 319
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
G+ + ++Y+R PL + A + N+ GDC+V FS+R +F +E++
Sbjct: 320 LEPIGETVEVRYYDRKSPLTI-ADRAIESYSNIEPGDCIVCFSKRAVFFNSKKLEEN-GI 377
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
VIYG LPP T+ QA FND D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +
Sbjct: 378 KPAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--E 435
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
++P + QIAGRAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++
Sbjct: 436 LLPTYAAL--QIAGRAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPITNVGIAPTYD 493
Query: 603 QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
Q+E F+ L +F +LL+ F C + +F+C ++++A ++++V L L+ R+ F
Sbjct: 494 QIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVP-LPLKVRYTF 552
Query: 663 CFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGM-----PKGSAKNDAELLDLETKHQV 717
C +P+N D + ++ A ++ ++ M P A +EL LE ++V
Sbjct: 553 CTSPLNTDDKRTAAVFVKMARRFATGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEV 612
Query: 718 LSMYLWLSHQFKE 730
L Y+WLS +F +
Sbjct: 613 LDQYMWLSMRFPD 625
>gi|290996790|ref|XP_002680965.1| ATP dependent RNA helicase [Naegleria gruberi]
gi|284094587|gb|EFC48221.1| ATP dependent RNA helicase [Naegleria gruberi]
Length = 1040
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 229/612 (37%), Positives = 331/612 (54%), Gaps = 109/612 (17%)
Query: 255 FVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQR 314
F F + +P++ + +++ D+T P ++ + RKIIYH GPTNSGKT+ AL R
Sbjct: 338 FNTFVQQRYPEDYHLYTEALKTCDMTNPFNYYKKSIPFGRKIIYHMGPTNSGKTHAALTR 397
Query: 315 FMEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDE 373
+++ G+YC PLRLLA EVF K+N G C+L+TGQE++++P +NH+ACT+EM +E
Sbjct: 398 LSQSENGVYCGPLRLLAQEVFTKMNTQYGCKCNLMTGQERRIIPGANHVACTIEMADLNE 457
Query: 374 MYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKIC---------- 423
+YDVAV+DEIQM+SD RG AWTRALLGL A EIH+CGD S L +V+ +
Sbjct: 458 VYDVAVVDEIQMISDNQRGAAWTRALLGLQAREIHICGDGSALTIVKNLIFGGDNKLDAE 517
Query: 424 -------------------SETGDELHEQH------------------------YERFKP 440
++ L+ H Y R KP
Sbjct: 518 IEVVESENPNYDPTSESDNVDSNQNLYHYHQPVAANKLLQYTKSGIADSIDVIPYTRMKP 577
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L + +++L G ++N++ DC+V FSR EI+E+K IE +T CCVIYGALPPE R +QA
Sbjct: 578 LEISSESLQGSVQNIKDFDCIVTFSRNEIYEIKKMIEINTGIRCCVIYGALPPEVRTEQA 637
Query: 501 NLFNDQDNE----------FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK--IIPVPG 548
LFND N+ F VLVASDAVGMGLNLNI+RVVFY ++KY+ K + P+
Sbjct: 638 ELFNDSGNQDPEENGGQRDFTVLVASDAVGMGLNLNIKRVVFYRMTKYDYSKGGVAPLDV 697
Query: 549 SQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF- 607
S VKQIAGRAGRRG + G TT +DL YL +C+ P E + K GLFP ++QVE F
Sbjct: 698 SLVKQIAGRAGRRG-FHEIGQVTTFYENDLQYLHQCMNIPNEEITKAGLFPEWDQVESFS 756
Query: 608 ----AGQLSN------YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV-QGLSL 656
A +L+N + ++LEKF R+ +F C + +A ++ L+L
Sbjct: 757 KVYKAKELANNPEGSGISLYEVLEKFFALSRIHKDFFFCDVQQVLDLATSIDDAGPKLTL 816
Query: 657 EDRFNFCFAPV---------------NIRDPKA--------MYHLLRFASSYSKNAPVSI 693
+ +F+F APV + +P M ++LR + A V+
Sbjct: 817 KQKFDFVNAPVPGFDRAKEMHIRYVEDFSNPNIAAVPLNIDMENILRILDKIREKAKVTE 876
Query: 694 AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSH----QFKEEVFPYAKKAEAMATDIAE- 748
+ S L ++E H+++ +YLWL++ +F +E A+ E + T++ E
Sbjct: 877 QGFVNSVSVYLQEALKNIEFYHRMIDLYLWLANRYPLRFDKEAAEQAR--EVLMTELTES 934
Query: 749 LLGQSLTNANWK 760
LL Q+ N K
Sbjct: 935 LLNQTEENKKIK 946
>gi|426364980|ref|XP_004049568.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Gorilla gorilla gorilla]
Length = 774
Score = 381 bits (978), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/550 (40%), Positives = 325/550 (59%), Gaps = 55/550 (10%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 174
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 175 CKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 228
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEM--VSTDEMYD 376
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM V+T MY
Sbjct: 229 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPCMY- 287
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
+ C AL GL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+
Sbjct: 288 -------MLFKKLC------FALTGLCAEEVHLCGEPAAIDLVTELMYTTGEEVEVRDYK 334
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 335 RLTPISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTK 392
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQV 551
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ
Sbjct: 393 LAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQA 452
Query: 552 KQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
QIAGRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L
Sbjct: 453 LQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHL 512
Query: 612 SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD 671
+ T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N +
Sbjct: 513 PDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQ 571
Query: 672 PKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSH 726
P LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS+
Sbjct: 572 PFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSY 631
Query: 727 QFKEEVFPYA 736
+F ++FP A
Sbjct: 632 RFM-DMFPDA 640
>gi|14626299|gb|AAK71567.1|AC087852_27 putative mitochondrial RNA helicase [Oryza sativa Japonica Group]
Length = 557
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/476 (42%), Positives = 296/476 (62%), Gaps = 20/476 (4%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PH W+P AR KR + H GPTNSGKT+NAL+R + G+YC PLRLLA EV
Sbjct: 61 TDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAREVAQ 120
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++N V C+L+TGQE++ + + H + TVEM Y AVIDEIQM+ RG+++T
Sbjct: 121 RLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRGFSFT 180
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RALLGL +DE+H+CGDP+V+ ++++I TGD + Q+YER PL V KT LG N++
Sbjct: 181 RALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPL-VPLKTTLGSFSNIK 239
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
+GDCVV FSRR I+ +K IE H C V+YG+LPPETR +QA +FNDQD+ +VLVAS
Sbjct: 240 AGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVLVAS 299
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNLNI R++F +L K++G + +++KQIAGRAGR GS +P G T LN D
Sbjct: 300 DAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCLNSD 359
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
L L LK P ++++ GLFP F+ + L++ F +LE+F + +L YF+
Sbjct: 360 HLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDYFIA 419
Query: 637 RHDHI-----KKVANML-------EKVQGLSLEDRFNFCFAPVNIRDPKA---MYHLLRF 681
+ + K+ + L E VQ ++ ++ A + R+ + ++ ++F
Sbjct: 420 DCEDMLCCGQAKLGSTLVQPRSNAELVQEEAMRNKKPSQLACMQYRNKETISLIFFEMQF 479
Query: 682 ASSYSKNAPVSIAMGMPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
A +Y+K V + G+ K+ +L +LE+ H+VL +Y+WLS + E+ +P
Sbjct: 480 AENYAKKGIVRLKEIFTPGTLQVPKSHNQLKELESIHKVLELYVWLSFRL-EDSYP 534
>gi|195497028|ref|XP_002095927.1| GE25405 [Drosophila yakuba]
gi|194182028|gb|EDW95639.1| GE25405 [Drosophila yakuba]
Length = 758
Score = 380 bits (976), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/611 (37%), Positives = 336/611 (54%), Gaps = 49/611 (8%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE+ S +G L Y+ + F G FR Y
Sbjct: 70 ELSGKLEKSELLKILNK--FTQRREIKSLCSENG------LDAYLQQQAF----GSFRRY 117
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 118 CIEAENLPVDLHITFSDITQGAGHIDDIFPYFLRHARTVFPHLDCMDDLKKI------SD 171
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 172 LRQPANWYSNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKA 231
Query: 339 NALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
N G C L+TG+E+K N H+ACTVEM S + Y+VAVIDEIQ + D+ RG+A
Sbjct: 232 NERGTPCDLVTGEERKFGISENSPAYHVACTVEMTSVNTPYEVAVIDEIQQIRDSQRGWA 291
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA LGL+ADE+H+CG+P L ++ KIC TG+ + + Y R L VE T L L N
Sbjct: 292 WTRAFLGLIADEVHVCGEPGALGLLLKICETTGETVEVRQYNRLTELTVE-NTALVSLDN 350
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
V GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND +N V+V
Sbjct: 351 VVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPENSCKVMV 409
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGL 569
A+DA+GMGLNL+IRR++FYSL K + G++ I + S QIAGRAGR + + G
Sbjct: 410 ATDAIGMGLNLSIRRIIFYSLIKPSINARGEREIDTISVSSALQIAGRAGRFRTQWEHGY 469
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
T +DL L L Q E + + GL P +Q+EL+A L N + L++ F C +
Sbjct: 470 VTAFKTEDLQILQRILAQTPEPLMQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTV 529
Query: 630 DGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
D S YF+C + K +A M++ V L L R+ FC +P+N + P L+ A YS++
Sbjct: 530 DDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCSPINRKMPFVCSMFLKVARQYSRS 588
Query: 689 APVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMA 743
P++ G P K +L+ LE V+ +Y ++ ++FP A
Sbjct: 589 EPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYRFM------DLFPEAAYVRDAQ 642
Query: 744 TDIAELLGQSL 754
++ E++ Q +
Sbjct: 643 KELDEIIQQGV 653
>gi|412989959|emb|CCO20601.1| predicted protein [Bathycoccus prasinos]
Length = 745
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 216/578 (37%), Positives = 319/578 (55%), Gaps = 56/578 (9%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D+ KP W+P AR M+R+II H GPTNSGKT+ A++R A G+YCSPLRLLA E+ +
Sbjct: 153 DMKKPGKWYPLARTMQREIILHVGPTNSGKTHAAMERLKRASSGVYCSPLRLLAWEISES 212
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+N G C L+TGQE K V + HIACTVEMV +++ D AVIDEI ++ D RGYA+TR
Sbjct: 213 LNKFGTKCDLVTGQELKRVENAEHIACTVEMVDVNKVVDCAVIDEIHLIGDDFRGYAFTR 272
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL--RNV 455
ALLG A E+HLCGD S ++++ KIC +TGD+L ++YER PL V + +N+
Sbjct: 273 ALLGTPALEVHLCGDTSCVELIEKICKDTGDKLRIRNYERLSPLNVAEEHFSKKRLEQNI 332
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
GDC VAFSR+ ++ +K IE+ CVIYG LPPE R +QA LFN D+ +D+L+A
Sbjct: 333 EKGDCFVAFSRKAVYALKSEIERRVPLRACVIYGGLPPEARSRQAELFNKPDSGYDLLIA 392
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD---GLTTT 572
SDA+GMGLNLNIRR++F L+K++G +I + +VKQIAGRAGR Y D G+ TT
Sbjct: 393 SDAIGMGLNLNIRRIIFNELTKFDGVEIRQLSSPEVKQIAGRAGRYKMSYYDKGGGVVTT 452
Query: 573 LN------------------------LDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFA 608
+ + L ++ L P E +K GL P FEQ+ +
Sbjct: 453 TDDGMVLDGNRKNGDNAKSDIIKSSGVSGLQFIQNQLNAPVEALKTAGLAPTFEQILEYC 512
Query: 609 GQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN 668
++ T ++ + + Y + + D + ++A LE + G+ +ED + F +P +
Sbjct: 513 SKVEGATLEDAMKALSSDAIVPKYYKMRKSDEVIRLAKYLENL-GMEIEDHYTFSVSPTS 571
Query: 669 IRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAE----------------LLDLE 712
+ +M L+ FA ++ VS+ + +PK K+D + L LE
Sbjct: 572 VDCLHSMKTLMNFAKAFLNEGHVSVKL-IPKSVNKHDRKSRADAQTRMNQRSVGILATLE 630
Query: 713 TKHQVLSMYLWLSHQFKEEVFPYAKKAEAM----ATDIAELLGQSLTNANWKPESRQAGK 768
+H+ +YLW + + + FP AEA+ A I L + T A + SR+
Sbjct: 631 EQHRAYDLYLWFARRMSAQ-FPEYSLAEALRVMCAHSIDAELQKLSTTATIESNSRKKKS 689
Query: 769 PKLHQQREDGYDR----PRSIIKSYENRKRQEKTSLTL 802
K + + R I++S NR +E+ +L+L
Sbjct: 690 EKKEEGSSKPVKQIEELDRKILRSAINRVNEERKNLSL 727
>gi|195343379|ref|XP_002038275.1| GM10744 [Drosophila sechellia]
gi|194133296|gb|EDW54812.1| GM10744 [Drosophila sechellia]
Length = 620
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/552 (39%), Positives = 316/552 (57%), Gaps = 37/552 (6%)
Query: 164 PVEVFGELRSTEKGAKIN--RSDFEVLREVFRFFSN---SGWAANQALAVYIGKSFFPTA 218
PV+V + S + G++++ E+L+ + +F L Y+ + F
Sbjct: 55 PVQVHANMDSEDVGSELSGKLEKAELLKILNKFTQRREIKSLCNENGLDAYLQQQAF--- 111
Query: 219 AGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFR 271
G FR + I+ P D+ + + +FP F+ FP D++K+
Sbjct: 112 -GSFRRFCIEAENLPVDLHITFSDITQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI- 169
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
+DL +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA
Sbjct: 170 -----SDLRQPANWYSNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLA 224
Query: 332 MEVFDKVNALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
EV++K N G C L+TG+E+K P +NH+ACTVEM S + Y+VAVIDEIQ +
Sbjct: 225 TEVYNKANERGTPCDLVTGEERKFGISENSP-ANHVACTVEMTSVNTPYEVAVIDEIQQI 283
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
D RG+AWTRA LGL+ADE+H+CG+P LD+++KIC TG+ + + Y+R L VE
Sbjct: 284 RDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTGETVEVRRYDRLTELTVE-N 342
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
T LG L N+ GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND
Sbjct: 343 TALGSLDNIVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDP 401
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRR 561
N V+VA+DA+GMGLNL+IRR++FYSL K + + +I + S QIAGRAGR
Sbjct: 402 ANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREIDTISVSSALQIAGRAGRF 461
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLE 621
+ + G T +DL L L Q E +K+ GL P +Q+EL+A L + + L++
Sbjct: 462 RTQWEHGYVTAFKSEDLQTLQRILAQTPEPIKQAGLHPTADQIELYAYHLPSSSLSNLMD 521
Query: 622 KFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
F C +D S YF+C + K +A M++ V L L R+ FC AP+N + P L+
Sbjct: 522 IFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLK 580
Query: 681 FASSYSKNAPVS 692
A YS+N P++
Sbjct: 581 VARQYSRNEPIT 592
>gi|422294926|gb|EKU22226.1| atp-dependent rna helicase [Nannochloropsis gaditana CCMP526]
Length = 1027
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/504 (40%), Positives = 293/504 (58%), Gaps = 58/504 (11%)
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK----GIYCSPLR 328
++ D+ PH W+P+AR+M+RKIIYH GPTNSGKTY+ALQR A G+Y PLR
Sbjct: 321 LVRVCDMRLPHDWYPYARLMRRKIIYHAGPTNSGKTYHALQRLKMADPAKGGGLYLGPLR 380
Query: 329 LLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
LLA+E++D +N GVYCSLLTGQEK+L+PFS+H + TVEM S + YDVAV+DEIQM+ D
Sbjct: 381 LLALEIYDTLNEEGVYCSLLTGQEKRLIPFSDHTSATVEMCSLRQDYDVAVLDEIQMIGD 440
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A EIHLCG P ++VV ++C TGD+L + YER L + ++ L
Sbjct: 441 PERGHAWTRALLGLRAKEIHLCGGPEAVEVVSRLCQATGDDLEIRKYERMTELTIASEPL 500
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
L D V GDC+VAFS+ +I +K IE T+H CC++YG+LP ETR QA +FN++
Sbjct: 501 L-DYSKVMVGDCIVAFSKSDICSIKQEIEAKTSHKCCMVYGSLPSETRSAQAGIFNEEGT 559
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV----PGSQVKQIAGRAGRRGSI 564
FDVLVA+DA+GMGLNLNIRR++F+SL K + + V G+ +QIA R +
Sbjct: 560 GFDVLVATDAIGMGLNLNIRRIIFHSLIKVSDEGGAEVLHSGLGTATEQIA-----RAGL 614
Query: 565 YPDGLTTTLNLDDLDYLIEC------------------------LKQPFEV---VKKVGL 597
+P + L+D L+E L PF + +GL
Sbjct: 615 FP----SPEQLEDFASLLESQVGRIKGSGELGGEEERWQQRKKGLSSPFHASFFARDIGL 670
Query: 598 FPFFEQVELFAGQLSNYTFCQ-------------LLEKFGENCRLDGSYFLCRHDHIKKV 644
+ E + + Q +++ F + +Y +CR + +
Sbjct: 671 EMNRGKKEENGKEETGEEGQQKSEEEEEGLGLMEVMDSFFNMAEVSDTYHMCRSRSMASI 730
Query: 645 ANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKN 704
A+ L +V+ LS+ +R+ P++ RD AM L +FA++ + P+ +++ +P
Sbjct: 731 ASYLAQVKPLSIAERYILSSVPISSRDRFAMQMLYQFAAARAARRPMPLSVRLPASPPTT 790
Query: 705 DAELLDLETKHQVLSMYLWLSHQF 728
+ +L TKH VL YLWLSH+F
Sbjct: 791 LLGMNELCTKHSVLDAYLWLSHKF 814
>gi|255079218|ref|XP_002503189.1| predicted protein [Micromonas sp. RCC299]
gi|226518455|gb|ACO64447.1| predicted protein [Micromonas sp. RCC299]
Length = 481
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/470 (41%), Positives = 289/470 (61%), Gaps = 8/470 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D+ +P W+P AR M+R++ H GPTNSGKTY+A+Q+ A G+YCSPLRLLA EV +
Sbjct: 2 DMREPGAWYPLARAMRREVHLHVGPTNSGKTYSAIQQLKAADSGVYCSPLRLLAWEVAEG 61
Query: 338 VNAL-GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
+N GV C+++TGQEKK V + H+ACTVEM M DVAV+DE +M D RGYA+T
Sbjct: 62 LNNRDGVPCNMITGQEKKPVDGARHVACTVEMADIRRMVDVAVVDEAHLMGDPERGYAFT 121
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RA+LG+ A E+HLCGDP+++ +V+K+ E GD+L Y R +PL V T L ++NV+
Sbjct: 122 RAILGIPAKELHLCGDPAMVPLVQKVIEEVGDKLTVHRYTRLQPLKV-LDTPLRSIKNVK 180
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE-FDVLVA 515
SGDC+VAFSR+ + ++K + + CVIYG+LPPE R +QA LFND+ +DVL+A
Sbjct: 181 SGDCLVAFSRKAVHQLKRDVVRQAGLRACVIYGSLPPEARARQAELFNDRATTGYDVLIA 240
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575
SDA+GMGLNL+IRRVVF ++ K++G+++ + +VKQIAGRAGR G + +G TTT+
Sbjct: 241 SDAIGMGLNLSIRRVVFTTMRKFDGEQMRLLEPPEVKQIAGRAGRFGQGFGEGGTTTMVA 300
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635
+ L L + P + + + P E VE + + T + L + L YF+
Sbjct: 301 EQLPILRHAVAAPVVDLTRCSVAPTLEHVECYLEAVPGATLVEALTALCRDASLPPHYFM 360
Query: 636 CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLRFASSYSKNAPVSIA 694
D + A ++E++ LS+ED + F AP N+ D + L FA ++++ V +
Sbjct: 361 ATCDGMLAAAKLVERLP-LSVEDHWMFAVAPANVEDGGEGAKALWTFADAFARRGRVGVR 419
Query: 695 M--GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
+ P + + EL LE H +YLWLS + FP + A+A+
Sbjct: 420 IIKRPPARAPETQGELNVLEQAHAAYDLYLWLSMRHP-AAFPEMELAQAL 468
>gi|302828636|ref|XP_002945885.1| hypothetical protein VOLCADRAFT_41250 [Volvox carteri f.
nagariensis]
gi|300268700|gb|EFJ52880.1| hypothetical protein VOLCADRAFT_41250 [Volvox carteri f.
nagariensis]
Length = 507
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/476 (43%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DLT+P +W+P AR ++RK++ H GPTNSGKT+ ALQ A GIYC PLRLLA EV D+
Sbjct: 3 DLTRPASWYPLARSLQRKVVAHLGPTNSGKTHAALQALKSASSGIYCGPLRLLACEVADR 62
Query: 338 VNALGVYCSLLTGQEKKLVP--------FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
+ A G+ C L+TGQE + S+ + DVAV+DEIQM+ D
Sbjct: 63 LTAEGLPCHLVTGQEVRPATGPAGEPKQASHTAGAPGGGGAASWALDVAVLDEIQMLGDR 122
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWTRALLGL A E+H+ GDP+VL ++R + +E GDEL + Y R PLVV+++ L
Sbjct: 123 LRGWAWTRALLGLAAREVHVAGDPAVLPLLRALAAECGDELEVRRYRRLSPLVVQSEAL- 181
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND---Q 506
G + V GDC+VAFSRR + ++ + + T C++YGALPPE RRQQA LFN
Sbjct: 182 GSVARVAGGDCLVAFSRRSLHGLRREVARCTGREACLVYGALPPEARRQQAALFNADPAA 241
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYP 566
++ DVL ASDA+GMGLNLNIRRVVF SL+KY+G + P+ ++V+QIAGRAGR S +P
Sbjct: 242 ESGGDVLCASDAIGMGLNLNIRRVVFTSLTKYDGTAVRPLQPAEVRQIAGRAGRFSSSHP 301
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
G TTL +DL L L QP E + L P E + +A L F
Sbjct: 302 AGYVTTLRSEDLGALHRALAQPPEHITHACLLPSSEALAEYAALHPERPLATSLLTFAAT 361
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKV-QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
RL SY ++ + +A+ L ++ + +S E+ FC AP ++ DP LLRFA Y
Sbjct: 362 ARLGPSYMYGNYEGMYGIASALRELSEDMSYEEMMLFCTAPADMDDPVVASALLRFAQLY 421
Query: 686 SKN---APVSIAMG--MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYA 736
+ P I G P AEL LE H+V +Y+WL ++ PYA
Sbjct: 422 CRRGRVGPEDITEGREQPLLLRATPAELKRLEELHRVYDLYVWLFYR-----LPYA 472
>gi|291231755|ref|XP_002735830.1| PREDICTED: suppressor of var1, 3-like 1-like [Saccoglossus
kowalevskii]
Length = 772
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/592 (39%), Positives = 331/592 (55%), Gaps = 52/592 (8%)
Query: 163 DPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGW---AANQALAVYIGKSFFPTAA 219
D +++ EL S + K + +VL+ + +F++ Q L ++ F A
Sbjct: 75 DDIDIGAELTSVDLKEKKD----DVLQILNKFYTKREMRMLGVEQGLDAHL----FHQAF 126
Query: 220 GKFRSYFIKK--CPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRA 272
FR Y I+ P D+ L + + +FP ++ + FP D++K+
Sbjct: 127 ISFRRYVIESEHLPADLHIILSDILSDSGHIDDIFPYYMRHAKQVFPMLDCMDDLKKI-- 184
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
+DLT P + AR MKRKII+H GPTNSGKTY AL+RF AK G+YC PL+LLA
Sbjct: 185 ----SDLTTPANLYQEARAMKRKIIFHAGPTNSGKTYQALERFYTAKSGVYCGPLKLLAN 240
Query: 333 EVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
EV K NA SN + +V DE VAVIDEIQM+ DA RG
Sbjct: 241 EVHQKSNA-----------RSDATTISNIVPGSVPCKKGDE---VAVIDEIQMLKDAGRG 286
Query: 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL 452
+AWTRALLG+ ADEIH+CG+ + +D+V + ETG+++ YER PL + + L+ +L
Sbjct: 287 WAWTRALLGVCADEIHVCGEAAAIDLVNSLMLETGEDVEINRYERLTPLTILDEALV-NL 345
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
NV+ GDC+VAFS+ +I+++ +E+ C VIYG+LPP T+ QA FND D+ +
Sbjct: 346 DNVQPGDCIVAFSKNDIYKISRELERK-GKACAVIYGSLPPGTKLAQAQKFNDPDDPCKI 404
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPD 567
LVA+DAVGMGLNL+I+R++F S+ K + +I + SQ QIAGRAGR GS + D
Sbjct: 405 LVATDAVGMGLNLSIKRIIFNSVVKPTLNEKGEIEIDRLTTSQALQIAGRAGRYGSKFAD 464
Query: 568 GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC 627
G TTL DDL L E L P E ++ GL P EQ+ELFA QL + TF L++ F
Sbjct: 465 GEVTTLYPDDLPILKEILDNPVETIEAGGLHPTAEQIELFAYQLPDATFSNLVDIFVHLS 524
Query: 628 RLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
++ YF+C D K +A+M++ + L+L R+ FC AP+N + L+FA YS+
Sbjct: 525 EVNPHYFVCNLDDFKFLADMIQHIP-LALRARYTFCCAPINRKHLFVCTSFLKFARQYSR 583
Query: 688 NAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
N ++ + P EL+ LE H VL +YLW S++F ++FP
Sbjct: 584 NDALTFEWLCKHIRWPLKLPMTIKELMHLEAVHDVLDLYLWFSYRFM-DMFP 634
>gi|341894290|gb|EGT50225.1| hypothetical protein CAEBREN_30421 [Caenorhabditis brenneri]
Length = 742
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/552 (37%), Positives = 314/552 (56%), Gaps = 41/552 (7%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWL----GPSDDAVKFLFPIFVEFCIEEFP- 264
I F A FR Y K V L+ L D + L+P F++ + FP
Sbjct: 99 INDKLFMRAFKSFREYCTPKDLSSVDAALLILLSDISKGDKDCEMLYPFFLDHSKQVFPH 158
Query: 265 -DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
+ + R + +DLT+PH W+P AR + RKI +H GPTNSGKTY+AL+RF EAK ++
Sbjct: 159 LEAMDDLRII---SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKSAVF 215
Query: 324 CSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAV 379
C PL+LLA EVF++ N LG+ C L+TG+E++ S H++ TVEM+ST +V V
Sbjct: 216 CGPLKLLAAEVFNRTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVV 275
Query: 380 IDEIQMMSDACRGYAWTRALLGLMADE----------------IHLCGDPSVLDVVRKIC 423
IDEIQM+ D RG+AWTRALLG ADE IHLCG+P+ +D+V+K+
Sbjct: 276 IDEIQMLRDEQRGWAWTRALLGAAADEVSINVVFHNRRFIQLQIHLCGEPAAIDIVKKLL 335
Query: 424 SETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHH 483
G+ + ++YER PL + K + N+ GDC+V FS+R +F +E++
Sbjct: 336 EPIGETVEVRYYERKSPLAIGDKA-IESYSNIEPGDCIVCFSKRAVFFNSKKLEEN-GIK 393
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
VIYG LPP T+ QA FND D+E +VLVA+DA+GMGLNLNI+RV+F S ++
Sbjct: 394 PAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIKRVIFNSCTRQTE--- 450
Query: 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQ 603
+P QIAGRAGR G+ Y +G+ TT+ +DL L L + + + VG+ P ++Q
Sbjct: 451 -LLPTYAALQIAGRAGRFGTAYANGVATTMRKEDLGTLKAILSEKVDPIMNVGIAPTYDQ 509
Query: 604 VELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFC 663
+E F+ L +F +LL+ F C + +F+C ++++A ++++V L L+ R+ FC
Sbjct: 510 IETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVP-LPLKVRYTFC 568
Query: 664 FAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVL 718
+P+N D + ++ A +S ++ + P A N EL LE +++L
Sbjct: 569 TSPLNTDDKRTAAVFVKMARRFSTGQALTYDWLIDMLEWPPKPATNLNELALLEQNYEIL 628
Query: 719 SMYLWLSHQFKE 730
Y+WLS +F +
Sbjct: 629 DQYMWLSMRFPD 640
>gi|330800084|ref|XP_003288069.1| hypothetical protein DICPUDRAFT_33488 [Dictyostelium purpureum]
gi|325081893|gb|EGC35393.1| hypothetical protein DICPUDRAFT_33488 [Dictyostelium purpureum]
Length = 519
Score = 371 bits (952), Expect = e-99, Method: Compositional matrix adjust.
Identities = 196/460 (42%), Positives = 285/460 (61%), Gaps = 12/460 (2%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL +PH W+P AR +KRK I H GPTNSGKT++AL+R A G+YC PLRLLA EV++
Sbjct: 24 ADLKEPHLWYPEARAIKRKFILHTGPTNSGKTHHALERLKSADSGVYCGPLRLLAQEVYE 83
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
K+ GV CS+LTGQ + + P + HI+CT+E+ +T+EM +VAVIDE Q++SD+ RG WT
Sbjct: 84 KLADSGVECSMLTGQIRIVNPNAKHISCTIELANTEEMVEVAVIDEFQLISDSDRGLYWT 143
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RA+LG+ A EIHLCGD S +++RKIC TGD + YER PL +E + + ++
Sbjct: 144 RAILGIPALEIHLCGDGSSKELIRKICEITGDSYELRTYERLSPLEIEERP--ASISKLQ 201
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GDC+V FS++E E+K +E C ++YG+LPP R Q+A FND D+ ++L+A+
Sbjct: 202 KGDCLVTFSKKECIELKQQMES-KGKRCAIVYGSLPPIIRLQEAKRFNDTDDA-EILIAT 259
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-GLTTTLNL 575
D +GMGLNLNI RV+F S KY+G + +++QIAGRAGR S + G + +
Sbjct: 260 DCIGMGLNLNISRVIFTSTFKYDGRDFRKLKSPELRQIAGRAGRFKSDFNSCGKVSAFDR 319
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT--FCQLLEKFGENCRLDGSY 633
LD++ + E K+ GLFP EQ+ELF ++ + F ++L+ F + +D Y
Sbjct: 320 TGLDHIRKAFAAREEENKRAGLFPPAEQLELFGENIAKNSTKFSEILKSFVLSSNIDQHY 379
Query: 634 FLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI 693
FLC D +A L++++ +S+ D++ F +P I KAM+ L FA YS+ +
Sbjct: 380 FLCYFDRFLIIAEHLDEIK-MSIPDKYLFICSPFQIHRKKAMFFLKSFAFDYSEGKTIPF 438
Query: 694 AMG---MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
M +G N + L LE + + YLWL+HQF E
Sbjct: 439 PFNQSHMVEGHTAN-STLECLEDLYAISDGYLWLAHQFPE 477
>gi|428184255|gb|EKX53111.1| hypothetical protein GUITHDRAFT_84578 [Guillardia theta CCMP2712]
Length = 548
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 207/479 (43%), Positives = 283/479 (59%), Gaps = 33/479 (6%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DL PH W+P AR MKR+ + H GPTNSGKT+ ALQR + G YC PLRLLA EV+D
Sbjct: 9 TDLRSPHLWYPLARKMKRRWVLHIGPTNSGKTFEALQRLASVESGRYCGPLRLLAWEVYD 68
Query: 337 KV-NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
K+ V CSL+TGQEK P +NH + TVEM D++ DVAVIDE+QM+ RG+AW
Sbjct: 69 KLKTGAPVRCSLMTGQEKVFDPKANHTSSTVEMADLDKVIDVAVIDEVQMLESNDRGWAW 128
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
TRALLGL A EIHLCG+P +++ K+C DEL + YER L V +L G LRN+
Sbjct: 129 TRALLGLPAAEIHLCGEPRAQELITKLCDLCEDELEVKEYERLSSLSVANHSLEGSLRNI 188
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN-----EF 510
+ GDC+VAF R +I ++K IE T CCV+YG+LPP TR++QA LFN++ + F
Sbjct: 189 QRGDCIVAFGRSKIHQLKRDIEAKTPFRCCVVYGSLPPLTRQEQAKLFNERGSFPNGQSF 248
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLT 570
DVLVASDA+GMGLNL I RVVF SL K++G + + S+++QI GRAGR G+ +G+
Sbjct: 249 DVLVASDAIGMGLNLEISRVVFSSLRKFDGQEERLLTASEIRQIGGRAGRFGTNTVEGIV 308
Query: 571 TTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFA-------------GQLSNYTFC 617
T+L+ DL L K + K L P +E F LS T
Sbjct: 309 TSLHNKDLPLLKRSFKTELPQIAKACLRPEIVMLEDFVHSIRHVWPREEGEDSLSLDTAL 368
Query: 618 QLLEKFGENCRLDGSYFL-CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNI----RDP 672
QL + F + + S+FL D ++ +A +E V+ + L DRF+FC AP+++ R
Sbjct: 369 QLFKDFHQT---ESSFFLGTTIDELRDLAKTIESVK-MPLTDRFSFCLAPIDLSKEDRRR 424
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDA--ELLDLETKHQVLSMYLWLSHQFK 729
A Y + R YS+ V I+ + D +L + E H +L +Y WL+++F+
Sbjct: 425 AAFYEMARM---YSEKRLVRISQVATFNNRIPDTMFKLREAEETHVILELYAWLANRFE 480
>gi|303283830|ref|XP_003061206.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457557|gb|EEH54856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 474
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 196/471 (41%), Positives = 286/471 (60%), Gaps = 9/471 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D+T P W+P AR +KR + H GPTNSGKT+NALQR EA+ G+YCSPLRLLA EV +
Sbjct: 2 DMTNPGRWYPTARTIKRNVHLHVGPTNSGKTWNALQRLKEAESGVYCSPLRLLAWEVAEG 61
Query: 338 VNAL-GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
+N + C L+TGQEK + H+ACTVEM +M ++ VIDE +M DA RGYA+T
Sbjct: 62 LNKKDNLPCDLVTGQEKSRAQNARHVACTVEMADVHKMREIGVIDEGHLMGDAHRGYAFT 121
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RAL+GL E+H+CGDP+++ +V KI +E GD L Y+R + L V +T L L++V
Sbjct: 122 RALIGLPVKELHVCGDPAMVPLVEKIVAELGDTLTINRYDRLQELNV-IETPLKSLKDVE 180
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND-QDNEFDVLVA 515
+GDC+VAFSR+ + ++K +E+ C+IYG+LPPE R +QA LFN+ +++ +DVL+A
Sbjct: 181 AGDCLVAFSRKAVHQLKDQVEREAGKRACIIYGSLPPEARSKQAELFNNREESGYDVLIA 240
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575
SDA+GMGLNL+IRRV+F S+ K++G+ + + +VKQIAGRAGR G +G TT++
Sbjct: 241 SDAIGMGLNLSIRRVIFASMRKFDGEFLRNLEPPEVKQIAGRAGRYGKGSTEGGATTMSA 300
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635
D L + L P + + + P +Q+ L+ + L F + + YF+
Sbjct: 301 DTLPLMKAALAAPVVDLTRCSIAPTLDQIALYCEAKPDAGLVAALSAFTSDAKTSPHYFM 360
Query: 636 CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK--AMYHLLRFASSYSKNAPVSI 693
+ + A ++ + LSLED + F APV++ DP + L+ FA ++ K VS+
Sbjct: 361 NAAEQMTDAAKLVAHLP-LSLEDHWMFAVAPVSVADPSSPSARALVTFAEAFVKRGRVSV 419
Query: 694 AM--GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
+ P + AEL E H +YLW S + EVFP A+AM
Sbjct: 420 RIIDSPPMRAPATLAELDVHEQSHAAYDLYLWFSLRCP-EVFPERDLAQAM 469
>gi|301614881|ref|XP_002936914.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Xenopus (Silurana) tropicalis]
Length = 798
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 241/659 (36%), Positives = 357/659 (54%), Gaps = 91/659 (13%)
Query: 170 ELRSTEKGAKI----NRSDFEVLREVFRFFSNSGWAANQALAVYIG--KSFFPTAAGKFR 223
E+ T+ GA++ N+SD VL+ + +F+ Q L G F A FR
Sbjct: 125 EIGDTDIGAELTQPLNKSD--VLKTLNKFYKRK---EMQRLGAENGLDARLFHQAFISFR 179
Query: 224 SYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIE 275
Y ++ P V +++ +G DD LFP F+ + FP D + R +
Sbjct: 180 KYAMETDPLHVDLHIILNDICCGVGHVDD----LFPFFMRHAKQIFPMLDCMDDLRKI-- 233
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+DL P W+P AR ++RKII H GPTNSGKTY+A+QR++ AK G+YC PL+LLA E++
Sbjct: 234 -SDLRLPPNWYPEARAIQRKIIIHAGPTNSGKTYHAIQRYLSAKSGVYCGPLKLLAHEIY 292
Query: 336 DKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
K N GV C L+TG+E V S H ACT+EM S Y+VAVIDEIQM+ D R
Sbjct: 293 QKSNDSGVPCDLITGEELVFVDPEGRPSAHAACTIEMCSVTSPYEVAVIDEIQMIRDPSR 352
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWTRALLGL A+EIH+CG+ + +++V ++ TG+E+ ++YER PL + + L
Sbjct: 353 GWAWTRALLGLCAEEIHICGEGAAINLVTELMFTTGEEVEVRNYERLTPLKILDQA-LES 411
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L N+R GDC+V F++ +I+ V IE + C VIYG+LPP
Sbjct: 412 LDNLRPGDCIVCFNKNDIYSVSRQIEARS-LECAVIYGSLPP------------------ 452
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYP 566
++I+R++F SL K + G+K I + SQ QIAGRAGR S++
Sbjct: 453 ------------GVSIKRIIFNSLVKPSINEKGEKEIDTISTSQALQIAGRAGRFSSMFK 500
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
DG TT+ DDL L E +++P ++ GL P +Q+E+FA L + T L++ F
Sbjct: 501 DGEVTTMFRDDLPLLKEIMRKPVTAIETAGLHPTADQIEMFAYHLPDATLSNLIDIFVSL 560
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++DG YF+C D K VA+M++ + L+L R+ FC AP+N + P LL+FA +S
Sbjct: 561 SQVDGLYFVCNIDDFKFVADMIQHIP-LNLRARYVFCTAPINRKQPFVCTSLLKFARQFS 619
Query: 687 KNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYA----- 736
+N P++ + P S K +L+ LE+ H +L +YLWLS++F ++FP A
Sbjct: 620 RNEPLTFDWICRHINWPVASPKTIKDLVHLESVHDILDLYLWLSYRFM-DMFPDANLVRD 678
Query: 737 --KKAEAM----ATDIAELLGQSLTNANWKPESRQAGK-----PKL-HQQREDGYDRPR 783
K+ +++ +I +L+ S T A+ S G P L H G RPR
Sbjct: 679 IQKELDSIIQMGVYNITKLIRASETPASASDNSEAQGAHERSVPSLNHNMNSQGQRRPR 737
>gi|297737084|emb|CBI26285.3| unnamed protein product [Vitis vinifera]
Length = 612
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 209/542 (38%), Positives = 314/542 (57%), Gaps = 63/542 (11%)
Query: 243 PSDDAVKFLFPIFVEFCIEEFPDEIKRFRAM-----IESADLTKPHTWFPFARVMKRKII 297
P ++ F I V C + I++F + ++ DLT PHTW+P AR RK+I
Sbjct: 26 PFHRHLELRFRILVGVC-----NRIRQFSSSSSTSKLDFMDLTHPHTWYPNARRKSRKVI 80
Query: 298 YHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357
H GPTNSGKT++AL+R + GIYC PLRLLA EV ++N V C ++TGQE++ +
Sbjct: 81 MHVGPTNSGKTHHALKRLESSSSGIYCGPLRLLAWEVAKRLNKANVPCDMITGQEREEID 140
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQ--------------------------------- 384
+ H A TVEM Y AVIDEIQ
Sbjct: 141 GAKHKAMTVEMADVTSDYHCAVIDEIQAFRESNYWYSLLIFPVVAPSGVSHVHHVYNLLG 200
Query: 385 -----------MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQ 433
M+ RG+++TRALLG+ DE+HLCGD S + +++ I TGD+ Q
Sbjct: 201 LWFLLINYKKAMLGCRTRGFSFTRALLGISTDELHLCGDVSSVPLIQGILKVTGDDFEVQ 260
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
+YER PLV L ++++GDC+V FSRR+I+++K IE H C V+YG+LPP
Sbjct: 261 YYERLSPLV-PLNVPLRSFSDIQTGDCIVTFSRRQIYKLKRQIENGGKHLCSVVYGSLPP 319
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQV 551
ETR +QA +FND +EFDVLVASDA+GMGLNLNI R++F +L K++G ++ + VP ++
Sbjct: 320 ETRTRQATMFNDATSEFDVLVASDAIGMGLNLNISRIIFSTLKKFDGIEERDLTVP--EI 377
Query: 552 KQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
KQIAGRAGR GS +PDG T +N+ DL L LK V+++ GLFP F+ + + +
Sbjct: 378 KQIAGRAGRFGSKFPDGEVTCMNVKDLPLLHSSLKSLSPVLERAGLFPTFDLLFMHSRFH 437
Query: 612 SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD 671
+ Q+LE F +N +L +YF+ + + KVA +++++ L L D++ F +PV++ +
Sbjct: 438 PTKSLYQMLEHFVDNAKLSSNYFIADCEEMLKVAAIVDELP-LGLHDKYLFVISPVDMNN 496
Query: 672 PKAMYHLLRFASSYSKNAPVSIAMGMPKGS---AKNDAELLDLETKHQVLSMYLWLSHQF 728
+ L++FA +Y+K V + G+ K+ + L +LE+ +QVL +Y+WLS +
Sbjct: 497 DISSQGLIQFAQTYAKKGIVRLREIFTPGTLQVPKSHSALKELESIYQVLDLYVWLSFRL 556
Query: 729 KE 730
++
Sbjct: 557 ED 558
>gi|453081498|gb|EMF09547.1| hypothetical protein SEPMUDRAFT_72359 [Mycosphaerella populorum
SO2202]
Length = 745
Score = 366 bits (939), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 205/493 (41%), Positives = 282/493 (57%), Gaps = 45/493 (9%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL P+ WFP R+M R I H GPTNSGKTY+ALQR +AK G Y PLRLLA EVF +
Sbjct: 63 DLRYPNEWFPATRMMHRTIHLHVGPTNSGKTYHALQRLEQAKTGTYAGPLRLLAHEVFTR 122
Query: 338 VNALGVYCSLLTGQEKKLVPFS----------NHIACTVEMVSTDEMYDVAVIDEIQMMS 387
+NA G C+L+TG+E++L P S N ACTVEM+ ++ DVAVIDEIQM+
Sbjct: 123 LNAKGKPCALVTGEERRLPPGSQPDEPIEGAFNMTACTVEMMQLNKPLDVAVIDEIQMIG 182
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
+A RG+AWT+ LLG+MA E+HLCG+ + +++++C+ G++L Y+R PL V +
Sbjct: 183 NAERGWAWTQGLLGVMAREVHLCGEERTVPLIKELCASVGEKLEIHRYQRLSPLAVSDSS 242
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
L GDLR +R GDC+V+FS I ++ +EK T +YG+LPPETR QQA LFND D
Sbjct: 243 LDGDLRKLRKGDCIVSFSVMGIHALRKQVEKSTGRKVATVYGSLPPETRAQQARLFNDPD 302
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------- 560
N++D LVASDAVGMGLNL IRR++F S SK+NG + + +KQI GRAGR
Sbjct: 303 NDYDYLVASDAVGMGLNLAIRRIIFESSSKFNGVSRQRLSIADIKQIGGRAGRFRIAEQG 362
Query: 561 -------------RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
+G GL TTL D + + E +K GLFP +E F
Sbjct: 363 KIGAASAEELAAAKGEAANLGLVTTLERFDFPVVRAAMSAEPEPIKSAGLFPPAAILERF 422
Query: 608 AGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAP 666
AG T F +L + E ++ + LC +A+++E V+GLS+ DR C +P
Sbjct: 423 AGYFPPGTPFSYILTRLHELSQIHSRFHLCGLRDQVWIADIIEGVEGLSVSDRNILCSSP 482
Query: 667 VNIRDPKAMYHLL----RFASSYS-------KNAPVSIAMGMPKGSAKNDAELLDLETKH 715
D L+ R S+ S K P+ I +G+ + L +LE H
Sbjct: 483 AAKSDLDLWKQLMPAYARCISTQSGGNILDIKELPLEIMEAEIQGTREY---LRELERLH 539
Query: 716 QVLSMYLWLSHQF 728
+ + +YLWLS++F
Sbjct: 540 KGIVVYLWLSYRF 552
>gi|290980456|ref|XP_002672948.1| predicted protein [Naegleria gruberi]
gi|284086528|gb|EFC40204.1| predicted protein [Naegleria gruberi]
Length = 773
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 200/519 (38%), Positives = 303/519 (58%), Gaps = 32/519 (6%)
Query: 260 IEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAK 319
+++ D+I+ R +++ ADLT+PH +P R+ KRKII+H GPTNSGKTY+A Q AK
Sbjct: 213 LKDLEDQIEEER-ILKIADLTEPHQLYPLTRLKKRKIIFHIGPTNSGKTYSAFQALRNAK 271
Query: 320 KGIYCSPLRLLAMEVFDKV----NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMY 375
GIYC+PLRLLA E + K+ N L C L+TG K V + H T EM
Sbjct: 272 TGIYCAPLRLLATEAYVKLTSGDNPLST-CQLITGDFKIEVENATHTCSTTEMADISSEI 330
Query: 376 DVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHY 435
DVAVIDEIQ+++D RG++WT+ALLG+ A+E+HLCG+ VL ++ K+C +TGDEL + Y
Sbjct: 331 DVAVIDEIQLITDPDRGWSWTKALLGVRANEVHLCGEGRVLKLIEKLCQDTGDELEVKEY 390
Query: 436 ERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
R L + + L ++ GDC+V FSR+E+F +K IEK TN CV+YG LPP+T
Sbjct: 391 NRLTKLNITKQATLKSFNDLEKGDCIVCFSRKEVFRMKNEIEKSTNLRVCVVYGGLPPQT 450
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R QA LFN + + +DVLVA+DA+GMGLNLNIRRV+F + K++G ++ + ++KQI
Sbjct: 451 RIIQAALFNHERSPYDVLVATDAIGMGLNLNIRRVIFSATEKFDGKEVRTLTPHEIKQIG 510
Query: 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF-------EVVKKVGLFPFFEQVELFA 608
GRAGR S + +G T+ D + + Q F E + GLFP EQ++ F+
Sbjct: 511 GRAGRFNSAFEEGEVTSFRNGD----CKVIHQAFSYDPTLEEEALRAGLFPTDEQIDHFS 566
Query: 609 GQLSNYT----FCQLLEKFGENCRLD-GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFC 663
Q N +L KF E +++ G YF+C + K +AN++ ++ L+ +R F
Sbjct: 567 RQFDNENHRVRLSTILAKFYEITQVNKGKYFMCEIEEKKDIANIIHPIENLTTAERMIFV 626
Query: 664 FAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDA--ELLDLETKHQVLSMY 721
+P++ + ++A YS+ V + + P + +L +LE ++ L++Y
Sbjct: 627 KSPIDPDESLCKDMAFKWAKLYSEGKDVPLLLPNPNTMKPINTLIKLKELEVMYKCLNVY 686
Query: 722 LWLSHQF-----KEEVFPYAKKAEAMATDIAELLGQSLT 755
WLS++ +E F Y + + I E L Q+++
Sbjct: 687 SWLSYRLEPFKERERSFEYQEICRNL---IEEALKQTVS 722
>gi|440632056|gb|ELR01975.1| hypothetical protein GMDG_05144 [Geomyces destructans 20631-21]
Length = 897
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 228/593 (38%), Positives = 323/593 (54%), Gaps = 55/593 (9%)
Query: 248 VKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGK 307
+K+LF FV C + + R + DL P WFP R ++RK+ H GPTNSGK
Sbjct: 278 IKYLFTKFV--CDAKVSSQT--LRQQQKFVDLRYPIEWFPATRALQRKVHLHVGPTNSGK 333
Query: 308 TYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV--PFSNHIACT 365
TY+ALQR +A+ G+Y PLRLLA EV+ ++NA G CSL+TG+E++ P +CT
Sbjct: 334 TYHALQRLEQAESGLYAGPLRLLAHEVYSRLNAKGKPCSLITGEERRFPEGPTPTMSSCT 393
Query: 366 VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
VEMV + +VAVIDEIQMM D RG+AWT+A LG+ A EIH+CG+ + +++ +C
Sbjct: 394 VEMVPLNTEVEVAVIDEIQMMGDGFRGWAWTQAFLGVRAREIHICGELRTIPLIQNLCKL 453
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCC 485
GDEL YER PL K+L G L ++ GDC++ FSR I +K +E+ T C
Sbjct: 454 MGDELTVHRYERLTPLECMGKSLHGKLDKLKKGDCIILFSRVAIHAMKKEVERATGKRCA 513
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V+YG+LPPETR QQA LFND DNE+D LVASDAVGMGLNL IRRV+F +LSK++G
Sbjct: 514 VVYGSLPPETRAQQAALFNDPDNEYDYLVASDAVGMGLNLAIRRVIFEALSKFDGKSHRN 573
Query: 546 VPGSQVKQIAGRAGR--------------RGSIYPD-----GLTTTLNLDDLDYLIECLK 586
+P S++KQIAGRAGR G + GL TTL+ D L +
Sbjct: 574 IPISEIKQIAGRAGRYKTAAEAMKRKDGPTGEVSRQVGRNVGLATTLDAVDHALLKRAMG 633
Query: 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645
E +K G+FP ++ FA T ++ + E L+ + LC + +A
Sbjct: 634 TDVEPLKTAGIFPPSTILQKFAAYFPKGTPLSYIILRLNEFATLNPMFTLCDFNEQLLLA 693
Query: 646 NMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKND 705
+M+E L+L+D+ F AP N++ + ++ ++ N + + +P +
Sbjct: 694 DMIEPFN-LTLQDQLVFIAAPANVKR-REQRPIIEALAAIIANRSATDLLEIP----ALN 747
Query: 706 AELLD------------LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS 753
ELLD LE HQ +++YLWLS++F VF A + + + E + +S
Sbjct: 748 LELLDETLTEGKEYLSKLEALHQGITLYLWLSYRFA-GVFRSQALAFHIKSLVEEKINES 806
Query: 754 LTNANWKPESR---QAGKPKLHQQR--EDGYDRP-----RSIIKSYENRKRQE 796
L N ++ R QA K K Q++ ED P SYE+ RQE
Sbjct: 807 LANVPFEENRRRVVQALKLKALQKQAEEDALKAPAVETETHTPMSYEDEDRQE 859
>gi|169611102|ref|XP_001798969.1| hypothetical protein SNOG_08660 [Phaeosphaeria nodorum SN15]
gi|160702221|gb|EAT83828.2| hypothetical protein SNOG_08660 [Phaeosphaeria nodorum SN15]
Length = 1055
Score = 362 bits (929), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 201/501 (40%), Positives = 289/501 (57%), Gaps = 46/501 (9%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
E ADL P W+P R ++R + H GPTNSGKTY+AL+R +A GIY PLRLLA EV
Sbjct: 173 EVADLRHPAEWYPSTRQVQRTVHMHVGPTNSGKTYHALKRLEQASSGIYLGPLRLLAHEV 232
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
+ ++NA G C+L+TG+E+++ + +CTVEM + +DVAVIDEIQM+S RG
Sbjct: 233 YTRLNAKGKSCALITGEEQRIPEGDAPLMYSCTVEMAPLNSRFDVAVIDEIQMISHKERG 292
Query: 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL 452
+AWT+A LGL A EIHLCG+ + ++R++C+ GD++H YER PL VE +++ G L
Sbjct: 293 WAWTQAFLGLPAKEIHLCGEARTVPLMRELCALVGDKVHVHEYERLTPLQVEPRSMGGKL 352
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
N++ GDC+VAF+ I ++ IE+ T C ++YG+LPPETR QQA LFND DN++D
Sbjct: 353 DNLQKGDCIVAFTVVGIHALRKDIERRTGKKCAIVYGSLPPETRAQQARLFNDPDNDYDF 412
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY------- 565
LVASDA+GMGLNL IRRV+F S K NG +P+ S++KQIAGRAGR + +
Sbjct: 413 LVASDAIGMGLNLAIRRVIFESTVKSNGVNYVPLEISEIKQIAGRAGRYKTAHQAVNVDT 472
Query: 566 -----------------------PD----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
P+ G TTL+ D +L +++ + + GLF
Sbjct: 473 QKSIADAAVDPAIGLDDKPQPKEPETKTIGWVTTLDEVDHAHLKAGMRREPDPITTAGLF 532
Query: 599 PFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
P VE FA T F ++ + E + + LC +A+ + V+ LS++
Sbjct: 533 PPSLIVERFANYFPPGTPFSYIMLRLHEISEIHPRFHLCGLKDQLAIADTIHLVKNLSIQ 592
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGS-AKNDAE-------LL 709
DR C AP+N+R+ L A + N S+ + +P A DAE L+
Sbjct: 593 DRIQICAAPINMRNAPERAFLRSLAECIADNKSGSL-LDIPTLPLAVMDAEPSGKRLYLV 651
Query: 710 DLETKHQVLSMYLWLSHQFKE 730
+LE H++L YLWLS++F +
Sbjct: 652 ELENLHKMLVAYLWLSYRFPQ 672
>gi|414872749|tpg|DAA51306.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 485
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 188/460 (40%), Positives = 291/460 (63%), Gaps = 9/460 (1%)
Query: 321 GIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVI 380
G+YC PLRLLA EV ++N + V C+L+TGQE+ + + H + TVEM Y AVI
Sbjct: 11 GVYCGPLRLLAREVAQRLNKVNVPCNLITGQERNEIEGAKHSSVTVEMADMTTNYQCAVI 70
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ RGY++TRALLGL +DE+H+CGDP+ + ++++I TGD + Q+YER P
Sbjct: 71 DEIQMVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSP 130
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L V K+ LG N+++GDC+V+FSRR I+++K IE+ H C V+YG+LPPETR +QA
Sbjct: 131 L-VPLKSPLGSFSNIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVYGSLPPETRTKQA 189
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+FND ++ +VLVASDA+GMGLNLNI R++F ++ K++G + +++KQIAGRAGR
Sbjct: 190 TMFNDDTSDLNVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGR 249
Query: 561 RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLL 620
GS +P G T LN DL L LK ++++ GLFP F+ + L++ F +L
Sbjct: 250 YGSKFPVGEVTCLNPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYSRLHGTDFFHPIL 309
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
E+F E +L YF+ + + KVA +++ + L L D++ FC +PV++ D + L++
Sbjct: 310 ERFLEKAKLSPDYFITDCEDMLKVAAIVDDLP-LGLYDKYLFCMSPVDVSDDISAQGLVQ 368
Query: 681 FASSYSKNAPVSIAMGMPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAK 737
FA +Y++ V + G+ K D +L +LE+ H+VL +Y+WLS + ++ FP +
Sbjct: 369 FAENYARKGIVRLKEIFTPGTLQVPKTDNQLKELESVHKVLELYVWLSFRM-DDSFPDRE 427
Query: 738 KAEAMATDIAELLGQSLTNANWKPESRQ---AGKPKLHQQ 774
A + + + L+ + L W+P+ R+ G KL Q+
Sbjct: 428 VAASQKSICSMLIEEYLERFGWQPQDRRKVLGGAQKLLQE 467
>gi|198438453|ref|XP_002129406.1| PREDICTED: similar to suppressor of var1, 3-like 1 [Ciona
intestinalis]
Length = 677
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 204/538 (37%), Positives = 308/538 (57%), Gaps = 30/538 (5%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L P+F+E +P +K+F + +D+++P W+ AR +KRKI+YH GPTNSGKT+
Sbjct: 136 LLPLFIEHGCSVYPS-LKQFSDLRTISDISEPTLWYENARSIKRKIVYHAGPTNSGKTHA 194
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN----HIACTV 366
ALQRF EAK G+YCSPLRLLA EV K GV+C ++TG ++ N +ACTV
Sbjct: 195 ALQRFYEAKTGVYCSPLRLLAREVCQKARDHGVHCDMITGDDRDYHYHENDQASKVACTV 254
Query: 367 EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426
EM + Y++A+IDEIQM+SD RG+AWTRA LG+ A EIH+CG+ +D+VR++ E
Sbjct: 255 EMTNLFRRYEIAIIDEIQMLSDMERGWAWTRAFLGVCAPEIHVCGEARAVDIVRQLADEC 314
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
D Y+R L V+ K + N++ GDC++ F++ I+ + + + +
Sbjct: 315 NDSFEVVTYKRLGKLRVK-KHPVESFNNLKPGDCIICFNKSRIYSYQKKLNS-LGINSAI 372
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK---- 542
IYG+LPP T+ +QA FND+D+ +VL+ +DA+GMGLNLNIRR++F L K K
Sbjct: 373 IYGSLPPRTKLEQAKKFNDKDHPCNVLITTDAIGMGLNLNIRRIIFSDLYKTTLTKGGRR 432
Query: 543 -IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601
+ + S QIAGRAGR S Y DG T+L+ + L + L+Q +K GL P F
Sbjct: 433 ELKQLTTSHALQIAGRAGRFNSQYKDGEVTSLSSKHMPLLHKLLRQTAPEIKVAGLHPTF 492
Query: 602 EQVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKV---QGLSLE 657
E + FA L+ + +++ F C ++ +FLC +A LE +G+SL
Sbjct: 493 ELLAEFANVLNTKSLSEVIVMFIGMCEMNEKLFFLCSLKECHDIAEYLEDANACRGISLR 552
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV------SIAMGMPKGSAKNDAELLDL 711
D + FC +P++ + + + L F +SY+ N V S+ P AK+ E+ L
Sbjct: 553 DMYTFCSSPISSGNKEVLSVLAAFVNSYANNVAVTEQDVKSLLRWPPPQQAKSKTEIERL 612
Query: 712 ETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL-------TNANWKPE 762
E+ H+VL +Y+WLS++FK ++F + M + L+ S+ TNA+ K E
Sbjct: 613 ESLHEVLRLYMWLSYRFK-DIFRDMFAIKTMRRHVDRLIQNSVSSKSNSYTNAHRKVE 669
>gi|452002983|gb|EMD95440.1| hypothetical protein COCHEDRAFT_1126086 [Cochliobolus
heterostrophus C5]
Length = 794
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 202/507 (39%), Positives = 283/507 (55%), Gaps = 57/507 (11%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
E ADL P W+P R + R + H GPTNSGKTY+AL+R E K GIY PLRLLA EV
Sbjct: 161 EVADLRYPAEWYPATREIPRTVHMHVGPTNSGKTYHALKRLEEVKSGIYLGPLRLLAHEV 220
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNHI---ACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+ +++A G C+L+TG+E+++ P +CTVEM + +DVAVIDEIQM+S R
Sbjct: 221 YTRLDAKGKACALVTGEEQRM-PQGERAYMYSCTVEMAPLNTHFDVAVIDEIQMISHPER 279
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWT+A LGL A EIHLCG+ + ++R++C+ GD++H Y R PL VE K+L G
Sbjct: 280 GWAWTQAFLGLQAREIHLCGEARTVPLMRELCALVGDKIHVHEYNRLTPLKVEPKSLGGK 339
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L N++ GDC+VAF+ I ++ IE+ T C ++YG+LPPETR QQA LFND DNE+D
Sbjct: 340 LNNLQKGDCIVAFTVLGIHALRREIERKTGRKCAIVYGSLPPETRAQQARLFNDPDNEYD 399
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR----------- 560
LVASDA+GMGLNL I+RV+F S K +G K + S +KQIAGRAGR
Sbjct: 400 YLVASDAIGMGLNLAIKRVIFESTMKTDGVKYASLQISDLKQIAGRAGRYKTAHQAVNAD 459
Query: 561 -------RGSIYP---------------------DGLTTTLNLDDLDYLIECLKQPFEVV 592
G+I P G TTL +D YL +++ E +
Sbjct: 460 SKQVSVANGAIDPVIGLDDKHSDADEIKAPESKTVGWVTTLEHEDHKYLKSGMEKEPEEI 519
Query: 593 KKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
K GLFP + VE FA T F ++ + + + ++LC +A+ + V
Sbjct: 520 KAAGLFPPSQIVERFANYFPPGTPFSYIMLRLHDISNIHPRFYLCTLKDQLAIADAIHTV 579
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA----------PVSIAMGMPKGS 701
+ LS++DR C AP+N+R L R ++ P+ I M + S
Sbjct: 580 KNLSVQDRITICAAPINMRSAPERNFLRRLTECIAEGKSGNLLDIECLPLDI---MDQPS 636
Query: 702 AKNDAELLDLETKHQVLSMYLWLSHQF 728
+ + L LE H+++ YLWLS++F
Sbjct: 637 SGDREYLYKLEQLHKMIVCYLWLSYRF 663
>gi|396465720|ref|XP_003837468.1| hypothetical protein LEMA_P037020.1 [Leptosphaeria maculans JN3]
gi|312214026|emb|CBX94028.1| hypothetical protein LEMA_P037020.1 [Leptosphaeria maculans JN3]
Length = 794
Score = 358 bits (919), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 199/489 (40%), Positives = 270/489 (55%), Gaps = 37/489 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P WFP R + R + H GPTNSGKTY+AL+R +A GIY PLRLLA EV+
Sbjct: 163 ADLRYPAEWFPATRQIPRTVHLHVGPTNSGKTYHALKRLEQADTGIYLGPLRLLAHEVYT 222
Query: 337 KVNALGVYCSLLTGQEKKLVP---FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++ A G C+L+TG+E++L +CTVEM + +DVAVIDEIQM+S A RG+
Sbjct: 223 RLTAKGKSCALVTGEEQRLPEGDGLPGMFSCTVEMAPLNTRFDVAVIDEIQMISHAERGW 282
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWT+A LG+ A EIHLCG+ + ++R++ + GD++H Y R PL V K+L L
Sbjct: 283 AWTQAFLGIQAKEIHLCGEARTVPIMRELAALAGDKVHVHEYARLTPLQVMPKSLNRQLE 342
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDCVVAFS I ++ IEK T HC ++YG+LPPETR QQA LFND DN++D L
Sbjct: 343 KLEKGDCVVAFSVLGIHAIRREIEKKTGKHCAIVYGSLPPETRAQQAALFNDPDNDYDFL 402
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS---------- 563
VASDA+GMGLNL I+R++F SL K +G P+ S+VKQIAGRAGR +
Sbjct: 403 VASDAIGMGLNLAIKRIIFESLMKSDGLYYNPLQISEVKQIAGRAGRYKTAHQAVTTDTQ 462
Query: 564 --------------IYPD--GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
I P G TT DD + L + E + GLFP +E F
Sbjct: 463 ASDPTIALDDTPPFIEPKTVGWVTTFEKDDHERLKRAMAMEPEPIHTAGLFPPSLMIERF 522
Query: 608 AGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAP 666
A T F ++ + E C+L + LCR +A+ + V+ LS ++R C AP
Sbjct: 523 ANYFPPRTPFSYIMLRLHEICQLHSRFHLCRLRDQLDIADAIHPVKSLSTQERITLCNAP 582
Query: 667 VNIRDPKAMYHLLRFASSYSKN-------APVSIAMGMPKGSAKNDAELLDLETKHQVLS 719
N+R+ + A + N P M + L +LE H++L
Sbjct: 583 ANMREELEKSFMRSLADCIANNRAAHLLELPDLPLQAMDAKPGQERKYLYELERLHKMLI 642
Query: 720 MYLWLSHQF 728
YLWLS++F
Sbjct: 643 TYLWLSYRF 651
>gi|393911127|gb|EFO26445.2| hypothetical protein LOAG_02037 [Loa loa]
Length = 785
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 208/562 (37%), Positives = 318/562 (56%), Gaps = 31/562 (5%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFPDEI 267
+ + F A FR+Y + P D +V + A V L+P F+E +P +
Sbjct: 167 VNRKMFHAAYKSFRNYCLHASPLDPCIAVVISDILNKARDVDSLYPYFIEHAKRVYP-HL 225
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
+ + + +DLTKP+ W+P AR + R+I +H GPTNSGKTY ALQ+F AK G YC PL
Sbjct: 226 ECEKELKTLSDLTKPYNWYPKARELFRRIHFHAGPTNSGKTYEALQQFYRAKTGFYCCPL 285
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDEI 383
RLLA EV K N G+ C ++TG+E++ S+H+A TVEMV D +VAVIDEI
Sbjct: 286 RLLANEVCQKTNEQGIKCDMVTGEERRYAVDADSPSSHVAMTVEMVPVDVNVEVAVIDEI 345
Query: 384 QMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVV 443
QM+ D RG+AWTRALLG+ A+EIHLCG+ + +D+VR + G+ + YER PL V
Sbjct: 346 QMLRDQSRGWAWTRALLGIAAEEIHLCGEEAAVDIVRGLLDPIGEHVEVHRYERKTPLTV 405
Query: 444 EAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLF 503
K L L NV+ GDC+V FS +F V + K VIYGALPP T+ QA F
Sbjct: 406 N-KEALKKLDNVKDGDCLVCFSVSMLFSVAKTLMK-LGVQPTVIYGALPPWTKLNQAKTF 463
Query: 504 NDQDNEFDVLVASDAVGMGLNLNIRRVVF--YSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561
N+ + +V+VA+DAVGMGLNLNIRR++F + ++ + V Q+AGRAGR
Sbjct: 464 NEMSRKPNVMVATDAVGMGLNLNIRRIIFVQFPFGEHQAN-------YHVMQVAGRAGRF 516
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLE 621
S Y G TTL D+ L +K+P + ++ G+ P EQ+E F+ L + +F +++
Sbjct: 517 QSAYQKGWVTTLRPADMPLLEAFMKEPIKPIETAGIAPTSEQLETFSYHLPHASFLSIID 576
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN--IRDPKAMYHLL 679
F L + LC + +K+A +++ + LS++ ++ FC APV+ + + A +
Sbjct: 577 MFISISSLSKKFHLCDIEQFRKLAELIDDI-PLSIKVKYAFCTAPVDMEVDNGVARTCFV 635
Query: 680 RFASSYSKNAPVS-------IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
R A +++ ++ I +PK ++ LLD+ + ++ +YLWLS++F ++
Sbjct: 636 RIARRFAEGQAINYNWFCEIIQWPLPKPTSVT--MLLDMCKLYNLIDLYLWLSYKFP-DI 692
Query: 733 FPYAKKAEAMATDIAELLGQSL 754
FP ++ + I + ++L
Sbjct: 693 FPDRERVRLLGKLIESYINEAL 714
>gi|345491178|ref|XP_001607739.2| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUV3
homolog, mitochondrial-like [Nasonia vitripennis]
Length = 705
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 216/575 (37%), Positives = 316/575 (54%), Gaps = 65/575 (11%)
Query: 204 QALAVYIG--KSFFPTAAGKFRSYFIKK--CPDDVAQYLVWLGPSDDAVKFLFPIFVEFC 259
+ALA+ G K + A+ FR Y I+ P D+ + + + +FP F+
Sbjct: 95 RALAIEYGLDKYLWQEASTSFRRYCIESETLPVDLHVVVCDILQGVGNITDIFPYFMRHA 154
Query: 260 IEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQR 314
E FP D++K+ +DL P W+P AR + RKII+H GPTNSGKTY+AL+R
Sbjct: 155 KEIFPHIDCMDDLKKI------SDLRTPANWYPVARAITRKIIFHAGPTNSGKTYHALER 208
Query: 315 FMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVS 370
FM AK G+YC PL++LA EV++K N G C L+TG+E+K SNH+ACTVEM++
Sbjct: 209 FMSAKTGVYCGPLKMLATEVYNKSNKNGTPCDLVTGEERKYAKDENNPSNHVACTVEMMN 268
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
+ +VAVIDEIQ++ D RG+ TG+++
Sbjct: 269 LNHPCEVAVIDEIQLIQDPGRGWX-------------------------------TGEDV 297
Query: 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490
+ Y+R L +E L G L NV+ GDC+V F++ +I+ V +E+ N VIYG+
Sbjct: 298 EVRKYKRLTELEIEDAAL-GTLSNVQPGDCIVCFNKNDIYTVSRNLEQR-NMEVAVIYGS 355
Query: 491 LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK-----IIP 545
LPP T+ QA FND ++ VLVA+DA+GMGLNL+IRR++FYSL K + +K +
Sbjct: 356 LPPGTKLAQAAKFNDPNHPCKVLVATDAIGMGLNLHIRRLIFYSLIKPSINKKGEREMDT 415
Query: 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVE 605
+ S QIAGRAGR G+ + G TT +DL L L Q + + + GL P +Q+E
Sbjct: 416 ISVSSALQIAGRAGRYGTQWEKGFVTTFKPEDLPTLKSLLSQSPDTITQAGLHPTADQIE 475
Query: 606 LFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF 664
L+A L L++ F C +D S YF+C D K +A+M+E V L L R+ FC
Sbjct: 476 LYAYHLPKAPLSNLMDIFVSLCTVDDSMYFMCNIDDFKFLADMIEHVP-LPLRARYVFCC 534
Query: 665 APVNIRDPKAMYHLLRFASSYSKNAPVS-----IAMGMPKGSAKNDAELLDLETKHQVLS 719
AP+N + P L+FA Y KN P++ + +G P S K +L+ LE VL
Sbjct: 535 APINRKLPFVCTMFLKFARQYCKNEPITFNWLCLHIGWPLTSPKTLIDLVHLEAVFDVLD 594
Query: 720 MYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
+YLWLS++F ++FP + M ++ ++ QS+
Sbjct: 595 LYLWLSYRFP-DLFPEPNMVQDMQKELDSVIQQSI 628
>gi|189206057|ref|XP_001939363.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975456|gb|EDU42082.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 761
Score = 353 bits (905), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 204/537 (37%), Positives = 292/537 (54%), Gaps = 50/537 (9%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P R ++R + H GPTNSGKTY+AL+R E GIY PLRLLA EV+
Sbjct: 168 ADLRYPAEWYPATRGIQRTVHMHVGPTNSGKTYHALKRLEEVDSGIYLGPLRLLAHEVYT 227
Query: 337 KVNALGVYCSLLTGQEKKLV--PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
++NA G C+L+TG+E+++ + +CTVEM + +DVAVIDEIQM+S RG+A
Sbjct: 228 RLNAKGKPCALVTGEEQRMPDDTRARMFSCTVEMAPLNTPFDVAVIDEIQMISHQERGWA 287
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+A LGL A EIHLCG+ + ++R++C+ GD++H Y R PL ++L G+L
Sbjct: 288 WTQAFLGLQAREIHLCGEARTVPIMRELCALVGDKVHVHEYNRLTPLQPMDRSLQGNLNL 347
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+ GDCVVAFS I ++ IE+ T C ++YG LPPETR QQA LFND DN++D LV
Sbjct: 348 LEKGDCVVAFSVLAIHALRRLIERKTGKKCAIVYGGLPPETRAQQARLFNDPDNDYDYLV 407
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY--------- 565
ASDA+GMGLNL I+RV+F + K NG++++P+ S++KQIAGRAGR + +
Sbjct: 408 ASDAIGMGLNLAIKRVIFETTVKNNGEQLVPLQISEIKQIAGRAGRYKTAHQAITKDSEK 467
Query: 566 ------------------PD------------GLTTTLNLDDLDYLIECLKQPFEVVKKV 595
PD G TTL +DL L + + E +
Sbjct: 468 ASVADTAIDPVIGLDDKQPDTEEVVQAEPQTVGWATTLERNDLVSLKAGMNKEPEAITSA 527
Query: 596 GLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGL 654
GLFP VE FA T F +L + ++ + LC +A++L ++ L
Sbjct: 528 GLFPPSVIVERFASYFPPGTPFSYILLRLHTISEMNPRFHLCALREQLAIADVLHPLENL 587
Query: 655 SLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI--AMGMPKGS-----AKNDAE 707
S++DR C APV+ R L A+ + SI +P G A+
Sbjct: 588 SIQDRITLCAAPVSSRKANETKFLKELATYIADGKSGSILDCETLPLGVMDVPLARTREY 647
Query: 708 LLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESR 764
L LE H+++ YLWLS++F + A M + + + +LT ++ ESR
Sbjct: 648 LRSLEDLHKMIVCYLWLSYRFP-NILTTRSLANHMKKLVEDKIEYTLTQFSFTEESR 703
>gi|407918858|gb|EKG12120.1| Helicase [Macrophomina phaseolina MS6]
Length = 775
Score = 353 bits (905), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 196/512 (38%), Positives = 283/512 (55%), Gaps = 60/512 (11%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P WFP R M+RKII H GPTNSGKTY+AL+R +A+ G Y PLRLLA EV+
Sbjct: 88 ADLRYPTEWFPATRKMQRKIILHVGPTNSGKTYHALKRLEQAETGAYAGPLRLLAHEVYT 147
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++NA G C+L+TG+E++ P + ACTVEM+ DV VIDEIQM+ D RG+
Sbjct: 148 RMNAKGAACALITGEERRRPPGEDRPKLTACTVEMIPLHMTMDVCVIDEIQMIGDLDRGW 207
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWT+A+LG+ A E+HLCG+ + ++R++ + GDE+ YER L ++ + + D +
Sbjct: 208 AWTQAVLGVQAKELHLCGEARTVPLIRELAATMGDEVEVNTYERLTSLEMDTRHIGYDFK 267
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
N+R GDC+VAFS EI ++ I K T ++YG+LPPETR QA LFND ++ +D+L
Sbjct: 268 NLRKGDCIVAFSIMEIHALRQTIMKQTGKKVAIVYGSLPPETRAHQARLFNDPNSGYDIL 327
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------------- 560
VASDA+GMGLNL+++R++F S+ K+NG + + + +KQIAGRAGR
Sbjct: 328 VASDAIGMGLNLSVKRIIFASIHKFNGFEHVTLSIPHLKQIAGRAGRYKTAHEANKEAEK 387
Query: 561 ----------RGSIYPD--------------------------GLTTTLNLDDLDYLIEC 584
G+I D GL TTL + Y+ +
Sbjct: 388 APQNADAVDASGTILDDFASEQQSDAPNSETEQFEFAEPPPGGGLVTTLEKAHMRYVSKA 447
Query: 585 LKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKK 643
LK E +K GLFP +E FA T F +L + + R+ + +C
Sbjct: 448 LKDEPEAIKTAGLFPPDPIIERFANYFPPGTPFSYVLLRLHDISRVHKRFHICVLKDQLS 507
Query: 644 VANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS--SYSKNAPVSIAMG----- 696
+A+ ++ V GLS+ DR FC AP N++ K LL A + KN + G
Sbjct: 508 IADTIQAVDGLSVLDRITFCAAPANLKTDKDREVLLNLAKCVAEQKNGNLLDIEGFDWTL 567
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ + + N L LE+ H+ + +YLWLS++F
Sbjct: 568 LDRPISANREYLHKLESLHKAIVLYLWLSYRF 599
>gi|340960248|gb|EGS21429.1| hypothetical protein CTHT_0032870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 797
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 206/566 (36%), Positives = 308/566 (54%), Gaps = 33/566 (5%)
Query: 248 VKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGK 307
+K+ F F+ FP I + ADL P+ W+P R+M+R H GPTNSGK
Sbjct: 180 LKYAFQTFL--MRSRFPKAINELHMAL--ADLRFPYEWYPATRMMQRTFHLHVGPTNSGK 235
Query: 308 TYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI--ACT 365
TYNAL+ A+ GIY PLRLLA E + + A C+L+TG+E ++ ++ +CT
Sbjct: 236 TYNALKALENARTGIYAGPLRLLAHETWTRFKAKNKPCALITGEELRIPENTDTWFHSCT 295
Query: 366 VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
VEM + DVAVIDEIQM+++ RG+AWT+A+LG+ A E+HLCG+ V+D+++ IC+
Sbjct: 296 VEMTPLNTRVDVAVIDEIQMIANDERGWAWTQAVLGVQAKEVHLCGEERVVDLIQNICAR 355
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCC 485
G++ Y R L VE +L G RN+R GD VV+FSR + ++K IE T C
Sbjct: 356 LGEKCIVHRYNRLNGLEVEKNSLKGSFRNLRKGDAVVSFSRLTLHQLKAGIEHDTGRRCA 415
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
++YG+LPPETR QA LFND DNE+D LVASDA+GMGLNL +RRVVF ++ K++G +
Sbjct: 416 IVYGSLPPETRASQAALFNDPDNEYDFLVASDAIGMGLNLEVRRVVFETVHKFDGTNLRQ 475
Query: 546 VPGSQVKQIAGRAGRRGSIY-------------PDGLTTTLNLDDLDYLIECLKQPFEVV 592
+ ++KQI GRAGR + P GL T L+ +DL + + +
Sbjct: 476 LSVPEIKQIGGRAGRYRTAAKANVSDEEANQPPPPGLVTALDDEDLRVIRKAFNTDVSPI 535
Query: 593 KKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
K GL P +E F T +L + E RL G + +C ++A ++ K
Sbjct: 536 KTAGLRPPPAVLERFHAYFPPKTPTTFVLARLREMGRLSGLFHMCDISDALQIAELI-KP 594
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI---------AMGMPKGSA 702
LS+ DR F P+N+RD K + L FA ++ + A+ P+ A
Sbjct: 595 YDLSIPDRCVFLHVPINLRDSKQVDVLKAFAKCVAEMGSGHLLDFPELDLEALEAPRPKA 654
Query: 703 KNDAE--LLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWK 760
A+ L LE+ HQ ++MYLWLS+++ + VF A + + + + L N+
Sbjct: 655 GQQAQDYLRRLESLHQAITMYLWLSYRY-QGVFQSQNLAFKVKQMVEDKIADHLEQLNFV 713
Query: 761 PESRQAGKPKLHQQREDGYDRPRSII 786
PE +A + L ++ ++ R ++
Sbjct: 714 PEKHRARRKFLREKAAQAEEKEREVL 739
>gi|451856523|gb|EMD69814.1| hypothetical protein COCSADRAFT_32486 [Cochliobolus sativus ND90Pr]
Length = 753
Score = 351 bits (901), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 199/506 (39%), Positives = 280/506 (55%), Gaps = 55/506 (10%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
E ADL P W+P R + R + H GPTNSGKTY+AL+R E K GIY PLRLLA EV
Sbjct: 161 EVADLRYPAEWYPATREIPRTVHMHVGPTNSGKTYHALKRLEEVKSGIYLGPLRLLAHEV 220
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSN--HIACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
+ +++A G C+L+TG+E+++ +CTVEM + +DVAVIDEIQM+S RG
Sbjct: 221 YTRLDAKGKACALVTGEEQRMPQGERAYMYSCTVEMAPLNTHFDVAVIDEIQMISHPERG 280
Query: 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL 452
+AWT+A LGL A EIHLCG+ + ++R++C+ GD++H Y R PL VE K+L G L
Sbjct: 281 WAWTQAFLGLQAREIHLCGEARTVPLMRELCALVGDKIHVHEYNRLTPLKVEPKSLGGKL 340
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
++ GDC+VAF+ I ++ IE+ T C ++YG+LPPETR QQA LFND DNE+D
Sbjct: 341 NKLQKGDCIVAFTVLGIHALRREIERKTGKKCAIVYGSLPPETRAQQARLFNDPDNEYDY 400
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------------ 560
LVASDA+GMGLNL I+RV+F S K +G + S +KQIAGRAGR
Sbjct: 401 LVASDAIGMGLNLAIKRVIFESTMKTDGINYHSLQISDLKQIAGRAGRYKTAHQAVNADS 460
Query: 561 ------RGSIYP---------------------DGLTTTLNLDDLDYLIECLKQPFEVVK 593
G I P G TTL +D YL + + E +K
Sbjct: 461 KQVSVADGVIDPVIGLDDKHSNADEIKAPESKTVGWVTTLEHEDHKYLKSGMAKEPEEIK 520
Query: 594 KVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQ 652
GLFP + VE FA T F ++ + + + ++LC +A+++ V+
Sbjct: 521 AAGLFPPSQIVERFANYFPPGTPFSYIMLRLHDISNIHPRFYLCTLKDQLAIADVIHTVK 580
Query: 653 GLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA----------PVSIAMGMPKGSA 702
L ++DR C AP+N+R L R A ++ P++I M + S+
Sbjct: 581 NLGIQDRITVCAAPINMRSAPERNFLRRLAECIAEGKSGNLLDIECLPLNI---MDQPSS 637
Query: 703 KNDAELLDLETKHQVLSMYLWLSHQF 728
+ L LE H+++ YLWLS++F
Sbjct: 638 GDREYLYRLEQLHKMIVCYLWLSYRF 663
>gi|330932356|ref|XP_003303742.1| hypothetical protein PTT_16084 [Pyrenophora teres f. teres 0-1]
gi|311320053|gb|EFQ88169.1| hypothetical protein PTT_16084 [Pyrenophora teres f. teres 0-1]
Length = 766
Score = 351 bits (901), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 205/540 (37%), Positives = 291/540 (53%), Gaps = 54/540 (10%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P R ++R + H GPTNSGKTY+AL+R E GIY PLRLLA EV+
Sbjct: 167 ADLRYPAEWYPATREIQRTVHMHVGPTNSGKTYHALKRLEEVDSGIYLGPLRLLAHEVYT 226
Query: 337 KVNALGVYCSLLTGQEKKLV--PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
++NA G C+L+TG+E+++ + +CTVEM + ++DVAVIDEIQM+S RG+A
Sbjct: 227 RLNAKGKPCALITGEEQRMPDDTRARMFSCTVEMAPLNTLFDVAVIDEIQMISHEDRGWA 286
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+A LGL A EIHLCG+ + ++R++C+ GD++H Y R PL ++L G L
Sbjct: 287 WTQAFLGLKAREIHLCGEARTVPIMRELCALVGDKVHVHEYNRLTPLQPMDRSLNGKLEL 346
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+ GDC+V+FS I ++ IE+ T C ++YG+LPPETR QQA LFND DN++D LV
Sbjct: 347 LEKGDCIVSFSVLGIHALRRLIERKTGKKCAIVYGSLPPETRAQQARLFNDPDNDYDYLV 406
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY--------- 565
ASDA+GMGLNL I+RV+F S +K NG++I + S++KQIAGRAGR + +
Sbjct: 407 ASDAIGMGLNLAIKRVIFESTAKSNGEQIKRLQISEIKQIAGRAGRYKTAHQAITKDSEK 466
Query: 566 ------------------PD------------GLTTTLNLDDLDYLIECLKQPFEVVKKV 595
PD G TTL +DL L +K EV+
Sbjct: 467 ASVADTTIDPVIGLDDKQPDTEKAVQAEPQTIGWATTLEREDLASLKFGMKSEPEVITSA 526
Query: 596 GLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGL 654
G+FP VE FA T F ++ + ++ + LC +A+ L V+ L
Sbjct: 527 GIFPPSVIVERFASYFPPGTPFSYIMMRLQTISEINPRFHLCALKDQLAIADNLHLVENL 586
Query: 655 SLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI---------AMGMPKGSAKND 705
S++DR C APV+ R L A+ + P I M P A N
Sbjct: 587 SIQDRITLCAAPVSARKANETKFLKELATCIADGKPGGILDLKTLPLNVMDAP--LANNR 644
Query: 706 AELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQ 765
L LE H+++ YLWLS++F V A + + + +LT ++ +SRQ
Sbjct: 645 EYLRSLEDLHKMIVCYLWLSYRFP-NVLTTRSLANYTKKLVEDKIEDTLTQFSFTEQSRQ 703
>gi|170580023|ref|XP_001895080.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158598094|gb|EDP36072.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 635
Score = 351 bits (900), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 214/582 (36%), Positives = 322/582 (55%), Gaps = 44/582 (7%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFPDEI 267
+ + F A FR+Y + P D +V + A V L+P F++ +P +
Sbjct: 33 VNRKMFHAAYKSFRNYCLHASPLDPCIAIVISDILNKARDVDSLYPYFIDHAKRVYP-HL 91
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
+ + + +DLTKP+ W+P AR + R+I +H GPTNSGKTY ALQ+F +AK G YC PL
Sbjct: 92 ECEKELKTLSDLTKPYNWYPKARELFRRIHFHAGPTNSGKTYEALQQFYQAKTGFYCCPL 151
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLV-----PFSNHIACTVEMVSTDEMYDVAVIDE 382
RLLA EV +K N G+ C ++TG+E++ P S+H+A TVEMV D ++AVIDE
Sbjct: 152 RLLANEVCEKTNEKGIKCDMITGEERRYAIDADNP-SSHVAMTVEMVPVDVNVEIAVIDE 210
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLG+ A EIHLCG+ + +D+VR + G+ + YER PL
Sbjct: 211 IQMLRDQSRGWAWTRALLGIAAKEIHLCGEEAAVDIVRSLLDPIGEHVEVHRYERKTPLN 270
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V K L L NV+ GDC+V FS +F V ++ K VIYGALPP T+ QA
Sbjct: 271 VN-KEALKKLNNVKDGDCLVCFSVSMLFSVAKSLMK-LGVQPTVIYGALPPWTKLNQAKT 328
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVF--YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
FN+ + +V+VA+DAVGMGLNLNIRR++F + ++ + V Q+AGRAGR
Sbjct: 329 FNEMSRKPNVMVATDAVGMGLNLNIRRIIFVQFPFGEHQAN-------YHVMQVAGRAGR 381
Query: 561 RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLL 620
S Y G TTL D+ L +K+P + ++ G+ P EQ+E F+ L + +F ++
Sbjct: 382 FQSAYQKGWVTTLRPTDMRLLEAFMKEPIKPIETAGIAPTSEQLETFSYHLPHASFLSII 441
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV--NIRDPKAMYHL 678
+ F L + LC + +K+A +++ V LS++ ++ FC APV ++ + A
Sbjct: 442 DMFISISSLSKKFHLCDIEQFRKLAELIDDVP-LSIKVKYAFCTAPVDMDVDNGVARACF 500
Query: 679 LRFA-SSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAK 737
+R A + P SI M LLD+ + ++ +YLWLS++F ++FP +
Sbjct: 501 VRIARRQWPLPRPTSITM------------LLDMCKIYNLIDLYLWLSYKFP-DMFPDRE 547
Query: 738 KAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGY 779
+ + I + +L + S+Q + E GY
Sbjct: 548 RIRLLGKLIEGYINDALLTMSDITSSQQ-------DEEESGY 582
>gi|393241110|gb|EJD48633.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 220/584 (37%), Positives = 312/584 (53%), Gaps = 78/584 (13%)
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ + E+AD+ P FP R ++RKII H GPTNSGKTYNAL+ +K+G+Y P
Sbjct: 17 VQKLALLYEAADMRYPAELFPEPRRIRRKIIMHVGPTNSGKTYNALRALAASKRGVYAGP 76
Query: 327 LRLLAMEVFDKVNALGVY-------------------CSLLTGQEKKLVPFSNHI-ACTV 366
LRLLA EV+ ++N GV C+++TG+EK++V + +CTV
Sbjct: 77 LRLLAHEVYTRLNK-GVILPAGIERNPLDPDKLYPRACNMITGEEKRIVAEDAPLTSCTV 135
Query: 367 EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426
EM+ YDVAV+DEIQM+ D RG AWT A+LGLMADE+HLCG+ S + VV + ET
Sbjct: 136 EMLQWITHYDVAVVDEIQMIGDEQRGGAWTSAVLGLMADELHLCGEESAVPVVEALAKET 195
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
GDEL HYER PL + +L GD +R GDCVVAFSRR IF++K IE+ T+ C V
Sbjct: 196 GDELIVNHYERLSPLHAASSSLEGDFSKLREGDCVVAFSRRLIFDLKHKIEQSTSFRCAV 255
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
YG LPPE R +QA LFND DNE+ ++VASDA+GMGLNL I+R++FY+ K++G ++IP+
Sbjct: 256 AYGMLPPELRAEQAALFNDPDNEYGIMVASDAIGMGLNLKIKRIIFYTTQKWDGQQMIPL 315
Query: 547 PGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQ 603
S VKQIAGRAGR G+ T++ +DL + ++ P +K+ + P EQ
Sbjct: 316 SLSTVKQIAGRAGRFSLGAQQTSAGIATSMEPEDLPVIQLAMRIPTRPLKRAVIAPTPEQ 375
Query: 604 VE-----LFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG--LSL 656
V+ L AG + F E R+ + L + A +LE + G +S+
Sbjct: 376 VQAILQLLPAGTPPSVVF----EILPWMARVPNMFTLVDVAGAVQQAKLLETLGGGTMSI 431
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGM-------------- 697
+ + P +++ + R +Y S+ +G+
Sbjct: 432 SEYWVLLHTPAPLKEEVVTEAVSRLVPAYKDRQSTSLISILDGIGLMRILEQASKLRHLY 491
Query: 698 -PKGSAK---------NDAELLDLETKHQVLSMYLWLSHQF------KEEVFPYAKKAE- 740
+GS N L +LE H+VL MYLWLS++ +E F ++ E
Sbjct: 492 EAEGSTARQEHGNPPVNAPVLAELERMHRVLIMYLWLSYRLPVAFSEQERAFEIKQELER 551
Query: 741 AMATDIAELLGQSLTNANWKPESR----QAGKPKLHQQREDGYD 780
+A ++EL S T A P R AG P QR G D
Sbjct: 552 CIAFFLSELKPGSWTAA---PPHRFGQFVAGLPDKPTQRSGGED 592
>gi|449295757|gb|EMC91778.1| hypothetical protein BAUCODRAFT_52931, partial [Baudoinia
compniacensis UAMH 10762]
Length = 575
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 202/510 (39%), Positives = 288/510 (56%), Gaps = 49/510 (9%)
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
+IK +A+ ADL P WFP R M R + H GPTNSGKTY+ALQR +A++G+Y
Sbjct: 26 SDIKNQKAL---ADLRYPSEWFPATRTMHRTVHLHVGPTNSGKTYHALQRLEQAERGVYA 82
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKK---LVPFSNHI--ACTVEMVSTDEMYDVAV 379
PLRLLA EV+ ++NA G CSL+TG+EK+ L N + ACTVEM+ + DVAV
Sbjct: 83 GPLRLLAHEVYTRMNAKGRPCSLITGEEKRSSELKVGGNALMSACTVEMMPLNATMDVAV 142
Query: 380 IDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFK 439
IDEIQM+ +A RG+AWT+ALLG+ A E+HLCG+ + ++R++C+ GD+L Y+R
Sbjct: 143 IDEIQMIGNAERGWAWTQALLGVKAKEVHLCGEERTVPLIRELCASVGDKLEIHRYQRLS 202
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499
PL V ++L GDLR +R GDCVV+FS I ++ IE+ T +YG+LPPETR QQ
Sbjct: 203 PLEVAGESLNGDLRKLRKGDCVVSFSVMGIHALRRQIEQQTGRKVATVYGSLPPETRAQQ 262
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A LFN+ +NE+D LVASDAVGMGLNL I+R++F S SK++G + + + +KQIAGRAG
Sbjct: 263 ARLFNEPNNEYDFLVASDAVGMGLNLAIKRIIFESSSKFDGQQRRTLGVADIKQIAGRAG 322
Query: 560 R---------------------------------RGSIYPDGLTTTLNLDDLDYLIECLK 586
R G+ GL TT+ D + +
Sbjct: 323 RYRTASFNAKATEEKEDLAAKKGDPPFEKVENAASGNRDNVGLVTTIEPFDFPIVAAAMT 382
Query: 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645
E +K GLFP +E F+ T F +L + E ++ + LC +A
Sbjct: 383 AEPEPIKTAGLFPPSSVLERFSSYFPPGTPFSYILIRLHELSQMHNRFHLCGLKEQIFIA 442
Query: 646 NMLEKVQGLSLEDRFNFCFAPVNIRD---PKAMYHLLRFASSYSKNAPVSIAMGMPKGS- 701
+++E V+GL++ DR C AP R+ K M R ++ S + V I +
Sbjct: 443 DLIEPVKGLTISDRNIICNAPAGRREQIWQKLMPAFARCIANQSGGSIVDIEELPLELLE 502
Query: 702 ---AKNDAELLDLETKHQVLSMYLWLSHQF 728
+ + L++LE H+ + YLWLS++F
Sbjct: 503 AEVSASREYLVELERLHKGIVGYLWLSYRF 532
>gi|156120373|ref|NP_001095332.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Bos taurus]
gi|151555726|gb|AAI49120.1| SUPV3L1 protein [Bos taurus]
gi|296472119|tpg|DAA14234.1| TPA: suppressor of var1, 3-like 1 [Bos taurus]
Length = 535
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 266/423 (62%), Gaps = 24/423 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV +++ + S V LFP F+ + FP D+
Sbjct: 120 LFHQAFISFRNYIMQSHSLDVDIHIILNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 179
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR + RKII+H GPTNSGKTY+A+Q+++ AK G+YC P
Sbjct: 180 LRKI------SDLRIPPNWYPEARAIHRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGP 233
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H+ACTVEM S Y+VAVIDE
Sbjct: 234 LKLLAHEIFEKSNAAGVPCDLVTGEERVSVDPDGKQAAHVACTVEMCSVTTPYEVAVIDE 293
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+EIHLCG+ + +D+V ++ TG+++ + Y+R P+
Sbjct: 294 IQMIKDPARGWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTGEDVEVRTYKRLTPIS 353
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 354 V-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKK 411
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND D+ +LVA+DA+GMGLNL+IRR++FYSL K + G+K I P+ SQ QIAGR
Sbjct: 412 FNDPDDPCKILVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEIEPITTSQALQIAGR 471
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT+N +DL L E L +P + +K GL P EQ+E+FA L + T
Sbjct: 472 AGRFSSKFKEGEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLS 531
Query: 618 QLL 620
L+
Sbjct: 532 NLI 534
>gi|452979093|gb|EME78856.1| hypothetical protein MYCFIDRAFT_60464 [Pseudocercospora fijiensis
CIRAD86]
Length = 918
Score = 348 bits (894), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 216/578 (37%), Positives = 306/578 (52%), Gaps = 76/578 (13%)
Query: 221 KFRSYFIKKCPDDVAQYLVWLG--PSDDAVKF--LFPIFVEFCIEEFPDEIK-------- 268
+F + PD + + W G P D + LF +F E D IK
Sbjct: 166 QFSQKITRGSPD---EKVPWHGAEPQGDQAIWNDLFNVFREKGPNGLEDRIKYHFYEQVT 222
Query: 269 --RF-----RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKG 321
RF R + ADL P WFP R ++R I H GPTNSGKTY+ALQR +A+ G
Sbjct: 223 GSRFTASDIRNQKDIADLRYPSEWFPATRAVQRTIHLHVGPTNSGKTYHALQRLEQAESG 282
Query: 322 IYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL---VPFS---NHIACTVEMVSTDEMY 375
+Y PLRLLA EV+ ++NA G C+L+TG+E++ P + + ACTVEM +
Sbjct: 283 VYAGPLRLLAHEVYARLNAKGRQCALITGEERRAPTDTPDASSFDMTACTVEMTPLNCCM 342
Query: 376 DVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHY 435
DVAVIDEIQM+ ++ RG+AWT+ALLG+MA E+HLCG+ + ++++IC+ GD L Y
Sbjct: 343 DVAVIDEIQMIGNSHRGWAWTQALLGVMAKEVHLCGEERTVPLIKEICASVGDPLEIHRY 402
Query: 436 ERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
ER PL + K+L G L+ +R GDCV++FS I ++ IEK T +YG+LPPET
Sbjct: 403 ERLSPLQMSDKSLDGKLKELRKGDCVISFSVMGIHALRKQIEKSTGRKVATVYGSLPPET 462
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R QQA LFND +N++D LVASDAVGMGLNL I+R+VF S SK+NG + + + +KQI
Sbjct: 463 RAQQARLFNDPNNDYDFLVASDAVGMGLNLAIKRIVFESSSKFNGYQRETLSIADIKQIG 522
Query: 556 GRAGR--------------------RGSIYPD-------------GLTTTLNLDDLDYLI 582
GRAGR +G PD GL TTL D +
Sbjct: 523 GRAGRFRTSAQAAEAPASEADLAAAKGEPRPDQEMLDADDTPENVGLVTTLERFDFPIIR 582
Query: 583 ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHI 641
+ E +K G+FP +E FAG T F +L + E ++ + LC
Sbjct: 583 TAMGSEPEPIKSAGIFPPAPVLERFAGYFPPGTPFSYILARLHELSQMHPRFHLCGLKDQ 642
Query: 642 KKVANMLEKVQGLSLEDRFNFCFAPVNIRDP----KAMYHLLRFASSYS-------KNAP 690
+A+++E ++GLS+ D+ P N D K M + R ++ S +N P
Sbjct: 643 VWIADLIEGIEGLSIADKNILTSCPANKGDADMWIKLMPDMARCIANQSGGDLADLENLP 702
Query: 691 VSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ + G+ + L LE H+ + +YLWLS++F
Sbjct: 703 LEVLETEVTGTREY---LRALEQLHKGIVVYLWLSYRF 737
>gi|398392779|ref|XP_003849849.1| hypothetical protein MYCGRDRAFT_47262, partial [Zymoseptoria
tritici IPO323]
gi|339469726|gb|EGP84825.1| hypothetical protein MYCGRDRAFT_47262 [Zymoseptoria tritici IPO323]
Length = 731
Score = 348 bits (894), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 208/542 (38%), Positives = 290/542 (53%), Gaps = 56/542 (10%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P WFP R R+I H GPTNSGKTY+ALQR +A+ G Y PLRLLA EV+
Sbjct: 34 ADLRYPSEWFPATRRRPREIHLHVGPTNSGKTYHALQRLEQAESGCYAGPLRLLAHEVYT 93
Query: 337 KVNALGVYCSLLTGQEKKLV---PFSNH-----------------IACTVEMVSTDEMYD 376
++NA GV C L+TG+E++ P + +CTVEMV + D
Sbjct: 94 RMNAKGVPCRLVTGEERRSAEERPAATQEQPGKAGEVDSNLHRYLTSCTVEMVPLNTKVD 153
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
VAVIDEIQM+ D RG+AWT ALLG+ A E+HLCG+ + ++ +IC+ GD+LH HY+
Sbjct: 154 VAVIDEIQMIGDPDRGWAWTNALLGVQAKEVHLCGEERTVPLITEICASIGDKLHVHHYQ 213
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL V + +L GDL +R GDC+V+FS I ++ IEK T ++YG+LPPETR
Sbjct: 214 RLSPLQVASTSLNGDLSLLRKGDCIVSFSVVGIHALRREIEKRTGRKVAIVYGSLPPETR 273
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QQA LFND +N++D LVASDAVGMGLNL I+R++F S SK++G P+ + +KQI G
Sbjct: 274 AQQARLFNDPNNDYDFLVASDAVGMGLNLAIKRMIFESSSKFDGVARGPLSIAAIKQIGG 333
Query: 557 RAGR------------------RGSIYPDGLTTTLNLDDLDY--LIECLKQPFEVVKKVG 596
RAGR R PD + L+D DY ++ ++ E + G
Sbjct: 334 RAGRFPRAAQPTIDPHGVYIMNRAGDVPDNIGLVTTLEDFDYSVVLSAMRSEPEPLATAG 393
Query: 597 LFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLS 655
+FP +E FA T F +L + E ++ + LC VA+++E VQGL+
Sbjct: 394 IFPPTPVLERFASYFPPGTPFSYILTRLHELSQMHRRFHLCGLRDQVWVADLIEPVQGLT 453
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLL-RFASSYSKNA----------PVSIAMGMPKGSAKN 704
+ DR C P D + L+ FA + + P+ I + +
Sbjct: 454 INDRNMICACPAAKGDIELWRKLMPAFARCIATGSGGDVLDIEELPLDI---LDEADTIT 510
Query: 705 DAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESR 764
+L LE H+ L YLWLS++F VF A + + E + L N N + R
Sbjct: 511 REQLKKLEQLHKGLVAYLWLSYRFA-GVFRTRPLATHVKGLVEEKIEYVLANLNLDAKKR 569
Query: 765 QA 766
+A
Sbjct: 570 RA 571
>gi|296420756|ref|XP_002839934.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636142|emb|CAZ84125.1| unnamed protein product [Tuber melanosporum]
Length = 745
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 204/522 (39%), Positives = 298/522 (57%), Gaps = 47/522 (9%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
++AD+ P W+P AR KR H GPTNSGKTYNAL+R EA GIY PLRLLA E+
Sbjct: 170 KAADMRFPQEWYPMARQFKRTWHLHVGPTNSGKTYNALKRLEEAADGIYAGPLRLLAHEI 229
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNHIAC-TVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
F+++N+ G+ C+L+TG + ++V + I+ TVEMV + +VAV+DEIQM+ D RG+
Sbjct: 230 FERMNSKGIPCNLVTGDDMRIVSETAAISSSTVEMVDLNREVEVAVLDEIQMIGDEDRGW 289
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWT+ALLG+ A E+H+CG+ +D+++ + + GDE +Y+R PL V ++L GDL
Sbjct: 290 AWTQALLGVRAKEVHMCGEERTVDLIKSLAANVGDECIVHNYKRLGPLEVMKESLGGDLT 349
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
++ GDCVV FSR+ IF +K IEK T C VIYG+LPPETR QA FND ++ +DVL
Sbjct: 350 KIQKGDCVVTFSRKSIFAMKKEIEKVTGLRCAVIYGSLPPETRSLQARYFNDPESGYDVL 409
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSIYPD 567
VASDAVGMGLNL+I+R++F + K+NG + P+ +KQIAGRAGR + +I D
Sbjct: 410 VASDAVGMGLNLSIKRMIFETTIKWNGSEYEPISVPHIKQIAGRAGRYKVAVSKHNIQAD 469
Query: 568 ------------GLTTTLNLDDLDYLIECLKQPFEVVKK----VGLFPFFEQVELFAGQL 611
GL TT LD++DY + LK V K G+ P Q+E FA
Sbjct: 470 ETIAPLPAAPSVGLVTT--LDEVDY--KSLKYAMSVTPKPIATAGILPNSSQIEEFASLY 525
Query: 612 -SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
+ L+ E + +CR + K A +LE + GL + ++ FC AP+ R
Sbjct: 526 PPDKELSFTLKTMDEAMHTRKLFHICRVETQIKTAKLLEGITGLRILEKLQFCMAPIG-R 584
Query: 671 DPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD------------LETKHQVL 718
+ + + A N S+ + +P D E+LD LE+ H+ +
Sbjct: 585 NVTVQEAVRKMAECVGYNKDGSL-LEIP----NLDLEVLDIDNPKTMPVLQRLESLHKTI 639
Query: 719 SMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWK 760
++LWLS +F P + A+ + T E + +L+N ++
Sbjct: 640 LVWLWLSWRFPATFAPR-ETAQELKTICEEKIDIALSNVRFE 680
>gi|367045754|ref|XP_003653257.1| hypothetical protein THITE_2115480 [Thielavia terrestris NRRL 8126]
gi|347000519|gb|AEO66921.1| hypothetical protein THITE_2115480 [Thielavia terrestris NRRL 8126]
Length = 725
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 207/588 (35%), Positives = 316/588 (53%), Gaps = 44/588 (7%)
Query: 245 DDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTN 304
D +K+ F F+ FP + + ADL P+ W+P R+++R I H GPTN
Sbjct: 116 DRELKYAFQTFL--MRSRFPKAVNELHMAL--ADLRFPYEWYPATRMLQRTIHLHVGPTN 171
Query: 305 SGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI-- 362
SGKTYNALQ +A+ GIY PLRLLA E++++ A C+L+TG+E ++ ++
Sbjct: 172 SGKTYNALQALEKARTGIYAGPLRLLAHEIWNRFTAKKKPCALVTGEEVRIPTDADTWFH 231
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+CTVEM + DVAVIDEIQM++ RG+AWT+A LG+ A E+HLCG+ V+ +++ +
Sbjct: 232 SCTVEMTPMNARVDVAVIDEIQMIASEDRGWAWTQAFLGVQAKEVHLCGEERVVPLIQDL 291
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
C+ G+E Y+R PL V ++L G N++ GD VVAFSR + ++K IEK T
Sbjct: 292 CARIGEECIVHRYQRLNPLNVMDESLKGKFSNLQKGDAVVAFSRVSLHQLKAGIEKETGR 351
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
C ++YG LPPETR QA LFN+ +NE+D LVASDA+GMGLNL I+RVVF + K++G
Sbjct: 352 RCAIVYGNLPPETRASQAALFNNPNNEYDYLVASDAIGMGLNLEIKRVVFEASYKFDGVT 411
Query: 543 IIPVPGSQVKQIAGRAGR----------RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVV 592
P+ ++KQI GRAGR S GL TTL+ +DLD + + +
Sbjct: 412 FRPLTVPEIKQIGGRAGRFRTATRETAGDTSQPSPGLVTTLDEEDLDLIRAAFGKEAPPI 471
Query: 593 KKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
GLFP +E F T +L + E RL + +C + +A ++++
Sbjct: 472 PTAGLFPPPAVIERFHSYFPPRTPISFVLARLREMSRLSPRFHMCDFTNAMDIAEIIKQY 531
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----------MGMPKG 700
LS+ DR F P+N+RDP+ + L FA ++ + + P
Sbjct: 532 D-LSVSDRCVFLNVPMNLRDPRQVEALRAFAKCVAEMGSGHLLDFPEIDLEVLDLARPTA 590
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWK 760
++ L LE+ HQ ++MYLWLS+++ + VF +++ +A + EL+ + +
Sbjct: 591 PSQQVEYLHRLESLHQAITMYLWLSYRY-QGVF----QSQGLAFKVKELVEAKIAD---- 641
Query: 761 PESRQAGKPKLHQQREDGYDRPRSIIKSYENRKRQEKTSLTLHTEKIP 808
KL E + R + K +R+E+ L + E +P
Sbjct: 642 ------HLEKLSFVEEQQRSKRRRMRKLAARSERKERNLLAIDEELLP 683
>gi|225558448|gb|EEH06732.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus G186AR]
Length = 714
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 197/487 (40%), Positives = 279/487 (57%), Gaps = 43/487 (8%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR + R I H GPTNSGKTY AL+R AK G Y PLRLLA E++
Sbjct: 140 ADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIYT 199
Query: 337 KVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
++NA G+ C L+TG E ++ VP FSN TVEMV + +V VIDEIQM++D
Sbjct: 200 RLNAKGIPCGLVTGDEVRISQDQVPGIFSN----TVEMVPLGQDVEVGVIDEIQMIADPH 255
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWTRALLG A E+HLCG+ V+ ++R + GD+L HYER PL ++L G
Sbjct: 256 RGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKG 315
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++
Sbjct: 316 NLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDY 375
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---------- 560
D LVASDA+GMGLNL+ +R++F S+ + + + SQVKQI GRAGR
Sbjct: 376 DFLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLSVSQVKQIGGRAGRYRSATDSRNV 435
Query: 561 RGSIYPD---------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
+GS D G T+L DL Y+ + L E + GL P ++ F+
Sbjct: 436 KGSRVADSAKNAETNVGFVTSLEDVDLPYIRKALNTEPEPILSAGLLPPDYIIKGFSEHF 495
Query: 612 -SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
+N F +L++ ++D ++FL + A ++ V+GLS++D+ F AP ++R
Sbjct: 496 PANTPFAYILQRLHNIAQVDPNFFLNDCQSHAEAAEAIDSVKGLSMDDKLVFLSAPTHMR 555
Query: 671 DPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDAELLDLETKHQVLSM 720
DP+ F ++N P+ I + K + + + L LET H+ L +
Sbjct: 556 DPQMSTIFKEFVRCVAENRSGDLLEIGDLPIDI---LDKPVSGDKSYLATLETLHRSLVL 612
Query: 721 YLWLSHQ 727
YLWLS++
Sbjct: 613 YLWLSYR 619
>gi|240274878|gb|EER38393.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus H143]
Length = 730
Score = 345 bits (885), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 276/487 (56%), Gaps = 43/487 (8%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR + R I H GPTNSGKTY AL+R AK G Y PLRLLA E++
Sbjct: 156 ADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIYT 215
Query: 337 KVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
++NA G+ C L+TG E ++ VP FSN TVEMV + +V VIDEIQM++D
Sbjct: 216 RLNAKGIPCGLVTGDEVRISQDQVPGIFSN----TVEMVPLGQDVEVGVIDEIQMIADPH 271
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWTRALLG A E+HLCG+ V+ ++R + GD+L HYER PL ++L G
Sbjct: 272 RGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKG 331
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++
Sbjct: 332 NLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDY 391
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--- 567
D LVASDA+GMGLNL+ +R++F S+ + + + SQVKQI GRAGR S
Sbjct: 392 DFLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLSVSQVKQIGGRAGRYRSATDSRNV 451
Query: 568 ----------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
G T+L DL Y+ + L E + GL P ++ F+
Sbjct: 452 KGFGVAGSAKNAETNVGFVTSLEDVDLPYIRKALNTEPEPILSAGLLPPDYIIKGFSEHF 511
Query: 612 -SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
+N F +L++ ++D S+FL + A ++ V+GLS++D+ F AP ++R
Sbjct: 512 PANTPFAYILQRLHNIAQVDPSFFLNDCQSHAEAAEAIDSVKGLSMDDKLVFLSAPTHMR 571
Query: 671 DPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDAELLDLETKHQVLSM 720
DP+ F ++N P+ I + K + + + L LET H+ L +
Sbjct: 572 DPQMSTIFKEFVRCVAENRSGDLLEIGDLPIDI---LDKPVSGDKSYLATLETLHRSLVL 628
Query: 721 YLWLSHQ 727
YLWLS++
Sbjct: 629 YLWLSYR 635
>gi|448089344|ref|XP_004196783.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|448093613|ref|XP_004197814.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|359378205|emb|CCE84464.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|359379236|emb|CCE83433.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
Length = 739
Score = 345 bits (885), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 210/541 (38%), Positives = 304/541 (56%), Gaps = 45/541 (8%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL+ P WFP AR MKRK+I H GPTNSGKTYN+LQ+ +AK G Y PLRLLA E++++
Sbjct: 208 DLSNPAEWFPEARRMKRKLIMHVGPTNSGKTYNSLQKLAKAKSGYYAGPLRLLAREIYER 267
Query: 338 VNALGVYCSLLTGQEKKLVP-------FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
NA G+ C+L+TG+E +VP S + T+EM+ + D+ +IDEIQM++D
Sbjct: 268 FNAQGIKCNLITGEE--VVPSMDEFGKVSEISSGTIEMIPLHKKMDICIIDEIQMIADTR 325
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG AWT A+LG+ A EIH+CG+ S + ++ K+ TGDE+ Y+R L + K +
Sbjct: 326 RGEAWTNAVLGVQAREIHMCGEESAVSLISKLAEMTGDEIEIHRYKRLGKLSLMNKP-IN 384
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
L N+ GDCV+AFS+R+I E+K IEK TN VIYGALPPE R ++A FN D +
Sbjct: 385 SLGNLMKGDCVIAFSKRKILELKCEIEKTTNLKVGVIYGALPPEIRSKEAYSFNVGD--Y 442
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI--YPDG 568
DVLVASDAVGMGLNL I+R+VF++ K+NG + IP+ S+VKQIAGRAGR I +G
Sbjct: 443 DVLVASDAVGMGLNLKIKRIVFFATKKFNGSETIPLTISEVKQIAGRAGRYSEIEGESEG 502
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFP----FFEQVELFAGQLSNYTFCQLLEKFG 624
T + DLDYL + + +P +KK ++P + + F S Y+ EK
Sbjct: 503 FVTAIYKRDLDYLKKVMNKPISDLKKACVWPTNKVWTYYMSKFPKHTSFYSILSSFEKEN 562
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEK---VQGLSLEDRFNFCFAPVNIR--DPKAMYHLL 679
+N +D +YFL D ++ + + + +++D+ AP+NI P +
Sbjct: 563 DNLVMD-NYFLTSLDARYEILKLFLRNDLYKRTTIDDQLRLSLAPINISVASPLVVKTTF 621
Query: 680 RFASSYSKNAP----------VSIAMGMPKGSAKNDAE---LLDLETKHQVLSMYLWLSH 726
F + ++ +I PK +A D L LE H+++ M+LWLS
Sbjct: 622 SFFENITERKTKNIFDFKFLHTTILKSRPKFTATVDETVQCLQYLEENHKIILMFLWLSQ 681
Query: 727 QFKEEVFPYAKKAEAMATDIAELLGQSLTNA-NWKPESRQ---AGKPKLHQQREDGYDRP 782
++ +F + A M T I + + + L N SR+ + PK +RE RP
Sbjct: 682 RW-PTLFVDKESATEMKTLIEKRISEELLNLRRLTKTSRKPFISTNPKRKTKRE---LRP 737
Query: 783 R 783
R
Sbjct: 738 R 738
>gi|260941850|ref|XP_002615091.1| hypothetical protein CLUG_05106 [Clavispora lusitaniae ATCC 42720]
gi|238851514|gb|EEQ40978.1| hypothetical protein CLUG_05106 [Clavispora lusitaniae ATCC 42720]
Length = 716
Score = 345 bits (884), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 208/594 (35%), Positives = 329/594 (55%), Gaps = 49/594 (8%)
Query: 178 AKINRSDFEVLREVFR---------FFSNSGWAANQALAVYIGKSFFP---TAAGKFRSY 225
AK+ ++ E L E F ++ N + Q + + + F P A S
Sbjct: 87 AKLPKARLEQLVEEFETTFSEKCSAYYENPSSHSLQLRDISLAEYFRPHLDAAPPIILSV 146
Query: 226 FIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTW 285
++ P D+A++ + ++ A L +F + CI + + + + D+ P W
Sbjct: 147 YLNMYPTDLAEHRGYKNKTEIATAILTELFHQHCIGDLLHSLPEQEKIDTNWDIGNPAEW 206
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR MKRKII H GPTNSGKT+N+L+ F AK G Y PLRLLA E++++ G++C
Sbjct: 207 FPQARKMKRKIIMHVGPTNSGKTHNSLKAFAAAKSGYYAGPLRLLAREIYERFEGQGIHC 266
Query: 346 SLLTGQEKKLVP-------FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
+L+TG+E +VP SN + T+EM+ + D+ +IDEIQM++D RG AWT A
Sbjct: 267 NLITGEE--VVPSLDEYGSVSNLSSGTIEMIPLHKKMDICIIDEIQMLADPTRGSAWTNA 324
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG 458
+LG+ A E+HLCG+ S + +V+++ TGDEL + Y+R L + K +G L N++ G
Sbjct: 325 VLGVQAKEVHLCGEESAVALVKEMVKSTGDELVIKQYKRLGKLTMCQKP-VGRLENLQKG 383
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
DC++AFS+R+I E+K IE+ T+ VIYGALPPE R Q + FN E+DVLVASDA
Sbjct: 384 DCLIAFSKRKILELKCRIEQSTSLKVGVIYGALPPEIRSQASAKFN--SGEYDVLVASDA 441
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY--PDGLTTTLNLD 576
+GMGLNL I+R+VF+S+ K+NG ++P+ S KQIAGRAGR + +GL T
Sbjct: 442 IGMGLNLKIKRIVFWSIMKFNGSDMVPLSVSATKQIAGRAGRFSADQGESEGLVTAFKSK 501
Query: 577 DLDYLIECLKQPFEVVKKVGLFP----FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS 632
DL +L +++P + V+K ++P + V F L + EK N +LD +
Sbjct: 502 DLRFLQLAMREPIKNVEKACIWPPSEFWVHYVSSFRSPLPLSEAVKKFEKSIGNRKLD-N 560
Query: 633 YFLCRHDHIKKVANMLEK---VQGLSLEDRFNFCFAPVNIR--DPKAMYHLLRFASSYSK 687
YFL DH ++ ++L + + L++ED+ + P+N+ P + L+F S+
Sbjct: 561 YFLSEFDHQLEILDLLLRNRLSKSLTIEDQLSLASVPLNLHFAPPVVVETALKFFECISR 620
Query: 688 -------------NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
++ +S+ + S + L LET H+++ +++WLS ++
Sbjct: 621 CESKTVFDFDFLHSSILSMEPSITGSSERVFDTLQALETNHKLVLVFMWLSQRW 674
>gi|119192696|ref|XP_001246954.1| hypothetical protein CIMG_00725 [Coccidioides immitis RS]
gi|392863804|gb|EAS35434.2| mitochondrial ATP-dependent RNA helicase Suv3 [Coccidioides immitis
RS]
Length = 724
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 203/497 (40%), Positives = 281/497 (56%), Gaps = 44/497 (8%)
Query: 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKG 321
+F IK +A+ AD P W+P AR ++R I H GPTNSGKTY+AL+R EAK G
Sbjct: 156 KFSSRIKEQKAL---ADYRFPAEWYPAARALQRTIHLHVGPTNSGKTYHALKRLEEAKSG 212
Query: 322 IYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNHIACTVEMVSTDEM 374
Y PLRLLA EV+ + NA G+ C L+TG E K VP +SN TVEM
Sbjct: 213 FYAGPLRLLAHEVYSRFNAKGISCGLITGDEVK-VPEGTPPTLYSN----TVEMAPLGLE 267
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH 434
DVAVIDEIQM+ D RG+AWTRALLG A EIHLCG+ V+ ++R++ + TGD+L +
Sbjct: 268 VDVAVIDEIQMIGDRQRGWAWTRALLGAPAKEIHLCGEERVVPLIRELAALTGDKLEIHN 327
Query: 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPE 494
Y+R PL+ K+L G+L+ ++ GDCVVAFSR I +K IEK T ++YG LP E
Sbjct: 328 YKRLNPLIPMTKSLKGNLQKLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIVYGGLPAE 387
Query: 495 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQI 554
R QQA+LFN+ DN++D LVASDA+GMGLNL+ +R++F S+ K + + + SQVKQI
Sbjct: 388 IRSQQADLFNNPDNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPVGLERLSVSQVKQI 447
Query: 555 AGRAGRRGSIY-------PD---------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
GRAGR S+ P G T L DL ++ +CL+ E + G+
Sbjct: 448 GGRAGRYRSVADAMDKSKPSKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEPINAAGIL 507
Query: 599 PFFEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
P + F S+ F LL++ + +F+C H V +L+ V GLS+
Sbjct: 508 PQDSMITAFTDHFPSDTPFRYLLQRLWNVSQTHPRFFMC-DLHSSDVQEILDDVPGLSVT 566
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI---------AMGMPKGSAKNDAEL 708
D+ F AP + DP + L FA+ +++ ++ + +P KN L
Sbjct: 567 DKLVFLSAPTSTADPTSALTLKAFATCVAQHKSGALLDIPELHLEILDVPVSGNKN--YL 624
Query: 709 LDLETKHQVLSMYLWLS 725
LE+ H+ L +YLWLS
Sbjct: 625 RSLESLHRSLVLYLWLS 641
>gi|303312633|ref|XP_003066328.1| Helicase conserved C-terminal domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105990|gb|EER24183.1| Helicase conserved C-terminal domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 724
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 202/497 (40%), Positives = 281/497 (56%), Gaps = 44/497 (8%)
Query: 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKG 321
+F IK +A+ AD P W+P AR ++R I H GPTNSGKTY+AL+R EAK G
Sbjct: 156 KFSSRIKEQKAL---ADYRFPAEWYPAARALQRTIHLHVGPTNSGKTYHALKRLEEAKSG 212
Query: 322 IYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNHIACTVEMVSTDEM 374
Y PLRLLA EV+ + NA G+ C L+TG E K VP +SN TVEM
Sbjct: 213 FYAGPLRLLAHEVYSRFNAKGISCGLITGDEVK-VPEGTPPTLYSN----TVEMAPLGLE 267
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH 434
DVAVIDEIQM+ D RG+AWTRALLG A E+HLCG+ V+ ++R++ + TGD+L +
Sbjct: 268 VDVAVIDEIQMIGDRQRGWAWTRALLGAPAKEVHLCGEERVVPLIRELAALTGDKLEIHN 327
Query: 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPE 494
Y+R PL+ K+L G+L+ ++ GDCVVAFSR I +K IEK T ++YG LP E
Sbjct: 328 YKRLNPLIPMTKSLKGNLQKLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIVYGGLPAE 387
Query: 495 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQI 554
R QQA+LFN+ DN++D LVASDA+GMGLNL+ +R++F S+ K + + + SQVKQI
Sbjct: 388 IRSQQADLFNNPDNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPVGLERLSVSQVKQI 447
Query: 555 AGRAGRRGSIY-------PD---------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
GRAGR S+ P G T L DL ++ +CL+ E + G+
Sbjct: 448 GGRAGRYRSVADAMDKSKPSKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEPINAAGIL 507
Query: 599 PFFEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
P + F S+ F LL++ + +F+C H V +L+ V GLS+
Sbjct: 508 PQDSMITAFTDHFPSDTPFRYLLQRLWNVSQTHPRFFMC-DLHSSDVQEILDDVPGLSVT 566
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI---------AMGMPKGSAKNDAEL 708
D+ F AP + DP + L FA+ +++ ++ + +P KN L
Sbjct: 567 DKLVFLSAPTSTADPTSALTLKAFATCVAQHKSGALLDIPELHLEILDVPVSGNKN--YL 624
Query: 709 LDLETKHQVLSMYLWLS 725
LE+ H+ L +YLWLS
Sbjct: 625 RSLESLHRSLVLYLWLS 641
>gi|325094231|gb|EGC47541.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus H88]
Length = 732
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 276/487 (56%), Gaps = 43/487 (8%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR + R I H GPTNSGKTY AL+R AK G Y PLRLLA E++
Sbjct: 158 ADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIYT 217
Query: 337 KVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
++NA G+ C L+TG E ++ VP FSN TVEMV + +V VIDEIQM++D
Sbjct: 218 RLNAKGIPCGLVTGDEVRISQDQVPGIFSN----TVEMVPLGQDVEVGVIDEIQMIADPH 273
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWTRALLG A E+HLCG+ V+ ++R + GD+L HYER PL ++L G
Sbjct: 274 RGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKG 333
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++
Sbjct: 334 NLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDY 393
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--- 567
D LVASDA+GMGLNL+ +R++F S+ + + + SQVKQI GRAGR S
Sbjct: 394 DFLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLSVSQVKQIGGRAGRYRSATDSRNV 453
Query: 568 ----------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
G T+L DL Y+ + L E + GL P ++ F+
Sbjct: 454 KGFGVAGSAKNAETNVGFVTSLEDVDLPYIRKALNTEPEPILSAGLLPPDYIIKGFSEHF 513
Query: 612 -SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
+N F +L++ ++D S+FL + A ++ V+GLS++D+ F AP ++R
Sbjct: 514 PANTPFAYILQRLHNIAQVDPSFFLNDCQSHAEAAEAIDSVKGLSMDDKLVFLSAPTHMR 573
Query: 671 DPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDAELLDLETKHQVLSM 720
DP+ F ++N P+ I + K + + + L LET H+ L +
Sbjct: 574 DPQMSTIFKEFVRCVAENRSGDLLEIGDLPIDI---LDKPVSGDKSYLATLETLHRSLVL 630
Query: 721 YLWLSHQ 727
YLWLS++
Sbjct: 631 YLWLSYR 637
>gi|348509637|ref|XP_003442354.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Oreochromis niloticus]
Length = 553
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/458 (41%), Positives = 274/458 (59%), Gaps = 23/458 (5%)
Query: 186 EVLREVFRFFSNSGWAANQALAVYIG--KSFFPTAAGKFRSYFIK--KCPDDVAQYLVWL 241
E+L+ + RF+ Q LA G F A FR Y ++ P D+ L +
Sbjct: 95 ELLKVLNRFYKRKEM---QKLAADSGLDARLFHQAFISFRKYILEMTSLPADLHIILNDI 151
Query: 242 GPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYH 299
+ ++P F+ + FP D + R + +DL P W+P AR ++RK+I+H
Sbjct: 152 CCGAGHIDDIYPYFMRHAKQIFPMLDCMDDLRKI---SDLRVPANWYPEARAIQRKVIFH 208
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-- 357
GPTNSGKTY+A+QR++ AK G+YC PL+LLA E+F+K N GV C L+TG+E+ V
Sbjct: 209 AGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIFEKSNDAGVPCDLVTGEERTFVDPE 268
Query: 358 --FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV 415
+ H+ACT+EM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+CG+P+
Sbjct: 269 GRAAGHVACTIEMCSVTTPYEVAVIDEIQMIRDPSRGWAWTRALLGLCAEEIHVCGEPAA 328
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+D ++++ TG+E+ +Y+R P + + L N+R GDC+V FS+ +I+ +
Sbjct: 329 IDFIKELMFTTGEEVEVHNYQRLTPFSI-LDHAVESLDNLRPGDCIVCFSKNDIYSISRQ 387
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
IE C VIYG+LPP T+ QA FND D+ +LVA+DA+GMGLNL+I+R++F SL
Sbjct: 388 IEAR-GQECAVIYGSLPPGTKLSQAKKFNDPDDPCKILVATDAIGMGLNLSIKRIIFNSL 446
Query: 536 SKYN----GDKII-PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
K N G+K + + SQ QIAGRAGR S + +G TT++ DDL L E L +
Sbjct: 447 VKPNVNEKGEKQMETISTSQALQIAGRAGRFSSKFKEGEVTTMHRDDLPVLKEILSHSVD 506
Query: 591 VVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
++ GL P EQ+E+FA L + T L+ +N R
Sbjct: 507 PIETAGLHPTAEQIEMFAYHLPDATLSNLVLWTAKNAR 544
>gi|70997649|ref|XP_753564.1| mitochondrial ATP-dependent RNA helicase Suv3 [Aspergillus
fumigatus Af293]
gi|66851200|gb|EAL91526.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus fumigatus Af293]
Length = 765
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 280/475 (58%), Gaps = 24/475 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR ++R I H GPTNSGKTY+ALQR +K G Y PLRLLA EV+
Sbjct: 166 ADLRYPAEWYPQARALQRTIHLHVGPTNSGKTYHALQRLQASKNGFYAGPLRLLAQEVYH 225
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G+ CSL+TG + K+ ++ TVEMV+ + YDV VIDEIQM++D RG+A
Sbjct: 226 RFQASGIPCSLVTGDDVKIPEGQTPSIVSNTVEMVNLGQPYDVGVIDEIQMLADPKRGWA 285
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA+LG A E+HLCG+ + +VR++ + TGD L Y+R PL V +++ GDL+N
Sbjct: 286 WTRAVLGARAKELHLCGETRAVPLVRELAALTGDRLEIHRYKRLNPLKVMDQSIRGDLKN 345
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GDC+VAFSR I +K IEK T ++YG+LP E R QQA LFND DN++D LV
Sbjct: 346 LQKGDCLVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQAKLFNDPDNDYDFLV 405
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPD------ 567
ASDA+GMGLNL+I+R++F +L K ++ + ++KQI GRAGR R ++ D
Sbjct: 406 ASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIGGRAGRYRPAVQQDKKDNND 465
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS-NYTFCQLLE 621
GL T L DL Y+ E ++ + G+FP + F+ + F L++
Sbjct: 466 SDSNIGLVTCLEEVDLPYIREAMETEPPPLTAAGIFPPDPVFQKFSAYFPRDVPFEYLIK 525
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
+ E C ++ +FLC + A +++ V GL +ED+ F AP+ RD K+ F
Sbjct: 526 RLLEVCEVNPLFFLCDPRGQLENAEIIDSVVGLPIEDQVTFMAAPMYTRDRKSRSVACAF 585
Query: 682 ASSYSKNAPVSIAMGMP--------KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
A ++++ + + +P + + N L +LE H+ + +Y WLS++F
Sbjct: 586 AECVAEHSGGRL-LDIPDLNLEILEEPVSGNKDYLHELEGLHRSVILYSWLSYRF 639
>gi|346977041|gb|EGY20493.1| ATP-dependent RNA helicase SUV3 [Verticillium dahliae VdLs.17]
Length = 748
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 202/521 (38%), Positives = 297/521 (57%), Gaps = 49/521 (9%)
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D KR + M AD P WFP R ++R I H GPTNSGKTY+AL+ AK GIY
Sbjct: 159 DVTKRQKQM---ADFRYPMEWFPATRALQRTIHLHVGPTNSGKTYHALKALENAKSGIYG 215
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDE 382
PLRLLA EV+ + A G C+++TG+E+++ ++ I+CTVEM + + DVAVIDE
Sbjct: 216 GPLRLLAHEVYARFTAKGKPCAMVTGEEQRIPEGVDNYFISCTVEMTPLNRLVDVAVIDE 275
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWT+ALLG+MA E+HLCG+ +D+V+ ICS GD+ YER PL
Sbjct: 276 IQMIGDPERGWAWTQALLGVMAKEVHLCGEERAVDLVKSICSALGDKCVVHRYERLSPLQ 335
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
K+L GDL + GD VVAFSR + +K AIE+ T C ++YG+LPPETR QQA L
Sbjct: 336 TMKKSLKGDLSKLEKGDAVVAFSRVGLHGLKKAIEEKTGKRCAIVYGSLPPETRAQQAAL 395
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG--- 559
FND DNE+D LVASDA+GMGLNL ++R++F + +K++G + S++KQI GRAG
Sbjct: 396 FNDPDNEYDFLVASDAIGMGLNLEVKRIIFETAAKFDGVNFRGLSTSEIKQIGGRAGRFR 455
Query: 560 --RRGSIYPD-----------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVEL 606
R+ +I D GL TTL+ DL + E Q E ++ + P +E
Sbjct: 456 SARQAAISADGAETLVEKKNPGLVTTLDALDLPRVQEAFTQQAEPLEAAYINPPAFILER 515
Query: 607 FAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFA 665
F+ L T +L + E R+ + + +VA+++++ L++ +R + A
Sbjct: 516 FSEYLPPDTPLSFMLLRIRELARVSPMFLVDISSDALRVADIIQEFP-LTIHERLSILNA 574
Query: 666 PVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD--------------- 710
PV + +P ++ HL++ A+ N + G + D E+LD
Sbjct: 575 PVQLNEP-SVVHLVQAAA----NCLATRQGGALYDMQEIDLEILDATIADFDGDGRRYLR 629
Query: 711 -LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELL 750
+E H +++YLWLS++ FP ++A+A + EL+
Sbjct: 630 AIEVLHHSVTLYLWLSYR-----FPNVFSSQALAFHVKELV 665
>gi|327355966|gb|EGE84823.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis ATCC 18188]
Length = 761
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 195/501 (38%), Positives = 282/501 (56%), Gaps = 46/501 (9%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
F +K RA+ ADL P W+P AR + R I H GPTNSGKTY+AL+R +AK G
Sbjct: 176 FSSSLKEQRAL---ADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYHALKRLEKAKTGF 232
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYD 376
Y PLRLLA E++ ++NA G+ C L+TG E ++ +P +SN TVEM + +
Sbjct: 233 YAGPLRLLAHEIYTRLNAKGIPCGLVTGDEVRISQDQIPGIYSN----TVEMAPFGQDVE 288
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM++D RG+AWTRALLG A E+HLCG+ V+ ++R + GD+L HYE
Sbjct: 289 VGVIDEIQMIADPHRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYE 348
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL +++L G+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R
Sbjct: 349 RLNPLKAMSRSLKGNLSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIVYGSLPAEIR 408
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QQA+LFND +N++D LVASDA+GMGLNL+ +R++F S+ + + + SQVKQI G
Sbjct: 409 SQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLTVSQVKQIGG 468
Query: 557 RAGRRGSIYPD-------------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597
RAGR S G T+L DL Y+ + L E + GL
Sbjct: 469 RAGRYRSAKDTANTNSSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTEPEPILAAGL 528
Query: 598 FPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL 656
P V+ F+ T F +L++ ++D S+FL + A ++ ++GLS+
Sbjct: 529 LPPDHIVKRFSEHFPPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAEAIDSIKGLSM 588
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDA 706
+++ F AP ++RDP+ F ++N P+ + + K + +
Sbjct: 589 DEKLVFLSAPTHMRDPQMSNIFREFVRCVAENRSGDLLEIDDLPIDV---LDKPVSGDKG 645
Query: 707 ELLDLETKHQVLSMYLWLSHQ 727
L LET H+ L +YLWLS++
Sbjct: 646 YLATLETLHRSLVLYLWLSYR 666
>gi|119479159|ref|XP_001259608.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Neosartorya fischeri NRRL 181]
gi|119407762|gb|EAW17711.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Neosartorya fischeri NRRL 181]
Length = 776
Score = 342 bits (878), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 191/475 (40%), Positives = 278/475 (58%), Gaps = 24/475 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR ++R I H GPTNSGKTY+ALQR +K G Y PLRLLA EV+
Sbjct: 177 ADLRYPAEWYPQARALQRTIHLHVGPTNSGKTYHALQRLQASKSGFYAGPLRLLAQEVYH 236
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G+ CSL+TG + K+ ++ TVEMV+ + YDV VIDEIQM++D RG+A
Sbjct: 237 RFQASGIPCSLVTGDDVKIPEGQTPTIVSNTVEMVNLGQPYDVGVIDEIQMLADPKRGWA 296
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA+LG A E+HLCG+ V+ +VR++ + TGD L Y+R PL V +++ GDL+N
Sbjct: 297 WTRAVLGARAKELHLCGETRVVPLVRELAALTGDRLEIHRYKRLNPLKVMDQSIRGDLKN 356
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GDC+VAFSR I +K IEK T ++YG+LP E R QQA LFND DN++D LV
Sbjct: 357 LQKGDCLVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQAKLFNDPDNDYDFLV 416
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPD------ 567
ASDA+GMGLNL+I+R++F +L K ++ + ++KQI GRAGR R + D
Sbjct: 417 ASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIGGRAGRYRPAAQQDKKDNND 476
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS-NYTFCQLLE 621
GL T L DL Y+ E + + G+FP + F+ + F L++
Sbjct: 477 ADSNIGLVTALEEVDLPYIREAMDTEPPPLTAAGIFPPDPVFQKFSAYFPRDVPFEYLIK 536
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
+ E C ++ +FLC A +++ V GL +ED+ F AP+ RD K+ F
Sbjct: 537 RLLEVCEVNPLFFLCDPRGQLDNAEVIDSVVGLPIEDQVTFMAAPMYTRDRKSRSVACAF 596
Query: 682 ASSYSKNAPVSIAMGMP--------KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
A ++++ + + +P + + N L +LE H+ + +Y WLS++F
Sbjct: 597 AECVAEHSGGGL-LDIPDLNLEILEEPVSGNKDYLHELEGLHRSVILYSWLSYRF 650
>gi|320033564|gb|EFW15511.1| ATP-dependent RNA helicase SUV3 [Coccidioides posadasii str.
Silveira]
Length = 724
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 201/497 (40%), Positives = 281/497 (56%), Gaps = 44/497 (8%)
Query: 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKG 321
+F IK +A+ AD P W+P AR ++R I H GPTNSGKTY+AL+R EAK G
Sbjct: 156 KFSSRIKEQKAL---ADYRFPAEWYPAARALQRTIHLHVGPTNSGKTYHALKRLEEAKSG 212
Query: 322 IYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNHIACTVEMVSTDEM 374
Y PLRLLA EV+ + NA G+ C L+TG E K VP +SN TVEM
Sbjct: 213 FYAGPLRLLAHEVYSRFNAKGISCGLITGDEVK-VPEGTPPTLYSN----TVEMAPLGVE 267
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH 434
+VAVIDEIQM+ D RG+AWTRALLG A E+HLCG+ V+ ++R++ + TGD+L +
Sbjct: 268 VEVAVIDEIQMIGDRQRGWAWTRALLGAPAKEVHLCGEERVVPLIRELAALTGDKLEIHN 327
Query: 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPE 494
Y+R PL+ K+L G+L+ ++ GDCVVAFSR I +K IEK T ++YG LP E
Sbjct: 328 YKRLNPLIPMTKSLKGNLQKLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIVYGGLPAE 387
Query: 495 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQI 554
R QQA+LFN+ DN++D LVASDA+GMGLNL+ +R++F S+ K + + + SQVKQI
Sbjct: 388 IRSQQADLFNNPDNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPVGLERLSVSQVKQI 447
Query: 555 AGRAGRRGSIY-------PD---------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
GRAGR S+ P G T L DL ++ +CL+ E + G+
Sbjct: 448 GGRAGRYRSVADAMDKSKPSKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEPINAAGIL 507
Query: 599 PFFEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
P + F S+ F LL++ + +F+C H V +L+ V GLS+
Sbjct: 508 PQDSMITAFTDHFPSDTPFRYLLQRLWNVSQTHPRFFMC-DLHSSDVQEILDDVPGLSVT 566
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI---------AMGMPKGSAKNDAEL 708
D+ F AP + DP + L FA+ +++ ++ + +P KN L
Sbjct: 567 DKLVFLSAPTSTADPTSALTLKAFATCVAQHKSGALLDIPELHLEILDVPVSGNKN--YL 624
Query: 709 LDLETKHQVLSMYLWLS 725
LE+ H+ L +YLWLS
Sbjct: 625 RSLESLHRSLVLYLWLS 641
>gi|159126705|gb|EDP51821.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus fumigatus A1163]
Length = 765
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 279/475 (58%), Gaps = 24/475 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR ++R I H GPTNSGKTY+ALQR +K G Y PLRLLA EV+
Sbjct: 166 ADLRYPAEWYPQARALQRTIHLHVGPTNSGKTYHALQRLQASKNGFYAGPLRLLAQEVYH 225
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G+ CSL+TG + K+ ++ TVEMV+ + YDV VIDEIQM++D RG+A
Sbjct: 226 RFQASGIPCSLVTGDDVKIPEGQTPSIVSNTVEMVNLGQPYDVGVIDEIQMLADPKRGWA 285
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA+LG A E+HLCG+ + +VR++ + TGD L Y+R PL V +++ GDL+N
Sbjct: 286 WTRAVLGARAKELHLCGETRAVPLVRELAALTGDRLEIHRYKRLNPLKVMDQSIRGDLKN 345
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GDC+VAFSR I +K IEK T ++YG+LP E R QQA LFND DN++D LV
Sbjct: 346 LQKGDCLVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQAKLFNDPDNDYDFLV 405
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPD------ 567
ASDA+GMGLNL+I+R++F +L K ++ + ++KQI GRAGR R + D
Sbjct: 406 ASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIGGRAGRYRPAAQQDKKDNND 465
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS-NYTFCQLLE 621
GL T L DL Y+ E ++ + G+FP + F+ + F L++
Sbjct: 466 SDSNIGLVTCLEEVDLPYIREAMETEPPPLTAAGIFPPDPVFQKFSAYFPRDVPFEYLIK 525
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
+ E C ++ +FLC + A +++ V GL +ED+ F AP+ RD K+ F
Sbjct: 526 RLLEVCEVNPLFFLCDPRGQLENAEIIDSVVGLPIEDQVTFMAAPMYTRDRKSRSVACAF 585
Query: 682 ASSYSKNAPVSIAMGMP--------KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
A ++++ + + +P + + N L +LE H+ + +Y WLS++F
Sbjct: 586 AECVAEHSGGRL-LDIPDLNLEILEEPVSGNKDYLHELEGLHRSVILYSWLSYRF 639
>gi|171690328|ref|XP_001910089.1| hypothetical protein [Podospora anserina S mat+]
gi|170945112|emb|CAP71223.1| unnamed protein product [Podospora anserina S mat+]
Length = 815
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 202/546 (36%), Positives = 296/546 (54%), Gaps = 65/546 (11%)
Query: 261 EEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK 320
E FPD I I ADL P+ W+P R+++R + H GPTNSGKTYNAL+ AK
Sbjct: 191 ERFPDAINELHREI--ADLRFPYEWYPATRMLQRTVHLHVGPTNSGKTYNALKALEGAKT 248
Query: 321 GIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVA 378
GIY PLRLLA E++ + A G C+L+TG+E ++ + +CTVEM ++ DVA
Sbjct: 249 GIYAGPLRLLAHEIWSRFAAKGKPCALVTGEEVRIPEGVDRWFHSCTVEMSPLNKPVDVA 308
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
V+DEIQM++ RG+AWT+A+LGL A E+HLCG+ V+++++ +C+ GD Y+R
Sbjct: 309 VVDEIQMIASEDRGWAWTQAVLGLQAKELHLCGEDRVVELIQDLCARIGDRCIVHRYQRL 368
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
PL +K+L GD RN+ GD VVAFSR + ++K IE+ T C ++YG+LPPETR Q
Sbjct: 369 NPLETMSKSLRGDFRNLEKGDAVVAFSRVALHKLKAGIEQATGKRCAIVYGSLPPETRAQ 428
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRA 558
QA LFND +NE+D LVASDA+GMGLNL I+RV+F S SK++G+K+ + ++KQI GRA
Sbjct: 429 QAALFNDPNNEYDYLVASDAIGMGLNLEIKRVIFESSSKFDGNKVRSLTVPEIKQIGGRA 488
Query: 559 GRRGSIYPD-----------------------GLTTTLNLDDLDYLIECLKQPFEVVKKV 595
GR + + G T + DL + ++ + ++
Sbjct: 489 GRYRTASAEIASAQEGAAGGEEAVEAKVESNTGWVTAFDFRDLQDIQNAFQKEAKPIETA 548
Query: 596 GLFPFFEQVELFAGQLSNYTFCQ-LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGL 654
GLFP +E F T +L + E RL + LC D ++A+ ++ L
Sbjct: 549 GLFPPANIIERFHTYFPPRTPTSFVLTRLRELARLSPRFHLCDFDTALEIADAIQPYN-L 607
Query: 655 SLEDRFNFCFAPVNIRDPK---------------------AMYHLLRF----ASSYSKNA 689
S+ DR F PV+ R + HLL F S +
Sbjct: 608 SVADRCVFLNCPVSFRVSRDGESNGQREALQAFAKCVAEMGSGHLLDFDCIDLSILDMDE 667
Query: 690 PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAEL 749
+ M N A L LE HQ+++MYLWLS+++ E VF ++++MA + E+
Sbjct: 668 EKRMTM------FNNPAYLQSLERLHQIITMYLWLSYRY-EGVF----QSQSMAFKVKEI 716
Query: 750 LGQSLT 755
+ +T
Sbjct: 717 VEDRIT 722
>gi|378726355|gb|EHY52814.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 765
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/507 (38%), Positives = 282/507 (55%), Gaps = 41/507 (8%)
Query: 255 FVEFCI----EEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
F+++ + E+ P +K R DL P W+ AR ++R + H GPTNSGKTYN
Sbjct: 169 FIDYVLQKKAEQDPGNLKSVRP-----DLRYPTEWYTPARQIQRDVHLHIGPTNSGKTYN 223
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL-----VPFSNHIACT 365
AL+R E+ G Y PLRLLA EVF + A G+ C L+TG + +L V S A T
Sbjct: 224 ALKRLEESGSGFYAGPLRLLAHEVFSRFKAKGMACDLVTGDDVRLDDNEDVTLS---AST 280
Query: 366 VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
VEMV +VAVIDE+QMM+ RG+AWTRA LG A E+HLCG+ VL ++R++ +
Sbjct: 281 VEMVDVTTPVEVAVIDEVQMMASEDRGWAWTRAFLGANAKEVHLCGEARVLPLIRELTAS 340
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCC 485
TGD LH Y+R PL V AK+L G+L+N+R GDC+V FS + +K IE T C
Sbjct: 341 TGDSLHVHEYKRLNPLKVMAKSLGGNLKNLRKGDCIVTFSVFSLHAMKKQIELDTGRRCA 400
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
++YG+LPPETR QQA LFND DN++D LVASDA+GMGLNL+++R++F+ K+NG
Sbjct: 401 IVYGSLPPETRAQQAALFNDPDNDYDYLVASDAIGMGLNLSVKRIIFHGTLKFNGSYTEQ 460
Query: 546 VPGSQVKQIAGRAGRRGSIYPD----------------GLTTTLNLDDLDYLIECLKQPF 589
+ Q+KQI GRAGR S + GL TTLN +DL + + +
Sbjct: 461 LTVPQIKQIGGRAGRYRSSHQAMNNSSNKSDTATEANVGLVTTLNDEDLPIVRDAMNAED 520
Query: 590 EVVKKVGLFPFFEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANML 648
++ GL P + +E A +L F +L++ + + + LC ++A ++
Sbjct: 521 PPIRYAGLLPPGDFLEDMATRLPKGIPFEYILQRLRRSASIHRRFKLCSIRDQSRIARII 580
Query: 649 EKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS------IAMGMPKGSA 702
E V+GL+ R AP + + + A ++ V+ I + + +
Sbjct: 581 EPVRGLTTAQRIVLTAAPGHSASSEVTLAMKALARVIAEQRQVTVVDVPEINLEILEKPI 640
Query: 703 KNDAELL-DLETKHQVLSMYLWLSHQF 728
D E L LE H+VL ++LWLS++F
Sbjct: 641 SGDREYLQSLEDLHKVLILFLWLSYRF 667
>gi|332029211|gb|EGI69194.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Acromyrmex echinatior]
Length = 672
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/494 (40%), Positives = 284/494 (57%), Gaps = 34/494 (6%)
Query: 163 DPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKF 222
D + V EL G+ + ++D L ++ FSN A I A F
Sbjct: 64 DDINVGAEL----TGSSLKKTD---LLKILNIFSNKTEIKELAQQYGIHNYLQGQAFTNF 116
Query: 223 RSYFI--KKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIE 275
+ Y + + P D+ L + V +FP F+ + FP D++K+
Sbjct: 117 KQYCLGTESLPVDLYVVLSDILQGAGNVSDIFPYFISHAKKIFPHLDCLDDLKKI----- 171
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+DL P TW+P AR RKII+H GPTNSGKTY+AL+RF+ AK G+YC+PL+LL EVF
Sbjct: 172 -SDLRSPATWYPLARSKNRKIIFHAGPTNSGKTYHALERFITAKSGVYCAPLKLLVAEVF 230
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSN----HIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
K N G C LLTG+E+K V N H++C+VEM + Y+VAVIDEIQ+M D R
Sbjct: 231 YKCNERGTSCDLLTGEERKHVKGYNNPASHLSCSVEMANLQNNYEVAVIDEIQLMRDLNR 290
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWTRALLG+ ADEIHLCG+ + +++V+ IC TG+ + + Y+R L VE + +
Sbjct: 291 GWAWTRALLGIPADEIHLCGEDAAIELVKAICVSTGENVEVRRYKRLTQLKVENRA-VET 349
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L N+ GDC+V F++ +I+ V ++E VIYG+LPP T+ QA FND +N
Sbjct: 350 LNNIMPGDCIVCFNKNDIYNVSRSLESK-RKEVAVIYGSLPPGTKLAQAAKFNDPNNSCK 408
Query: 512 VLVASDAVGMGLNLNIRRVVFYSL----SKYNGDKIIPVPG-SQVKQIAGRAGRRGSIYP 566
+LVA++A+GMGLNL+IRR++FYSL S G+K + V S QIAGRAGR G+ +
Sbjct: 409 ILVATNAIGMGLNLHIRRIIFYSLIQPTSNEKGEKEMDVISVSAALQIAGRAGRYGTAWE 468
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLL--EKFG 624
G TT +DL L L Q E + + GL P +Q+EL+A L N + L+ ++
Sbjct: 469 TGYVTTFKREDLLTLKNLLSQTPETITQAGLHPTADQIELYAYHLPNSSLSNLMFARQYS 528
Query: 625 ENCRLDGSYFLCRH 638
+N + ++ LC+H
Sbjct: 529 KNDAITFNW-LCQH 541
Score = 39.3 bits (90), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 672 PKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSH 726
P + L FA YSKN ++ +G P K +L+ LE VL +YLWLS+
Sbjct: 514 PNSSLSNLMFARQYSKNDAITFNWLCQHIGWPFRMPKTIIDLVHLEGVFDVLDLYLWLSY 573
Query: 727 QFKEEVFPYAKKAEAMATDIAELL 750
+F ++FP A+ + ++ L+
Sbjct: 574 RFM-DLFPDAEIVRDIQKELDALI 596
>gi|367022578|ref|XP_003660574.1| hypothetical protein MYCTH_2299039 [Myceliophthora thermophila ATCC
42464]
gi|347007841|gb|AEO55329.1| hypothetical protein MYCTH_2299039 [Myceliophthora thermophila ATCC
42464]
Length = 777
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 193/538 (35%), Positives = 300/538 (55%), Gaps = 44/538 (8%)
Query: 248 VKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGK 307
+K+ F F+ FP + + ADL P+ W+P R+M+R I H GPTNSGK
Sbjct: 164 LKYAFQTFL--MRSRFPKAVNELHMAL--ADLRFPYEWYPATRMMQRTIHLHVGPTNSGK 219
Query: 308 TYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI--ACT 365
TYNAL+ A+ GIY PLRLLA E + + A C+L+TG+E ++ ++ +CT
Sbjct: 220 TYNALKALENARTGIYAGPLRLLAHETWSRFQAKNKPCALVTGEEVRIPADTDTWFHSCT 279
Query: 366 VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
VEM + DVAVIDEIQM+++ RG+AWT+A LG+ A E+HLCG+ V+ +++ +C+
Sbjct: 280 VEMTPLNARVDVAVIDEIQMIANDERGWAWTQAFLGVQAKEVHLCGEERVVPLIQDLCAR 339
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCC 485
G++ YER PL V K++ G N++ GD +VAFS+ I ++K IEK T C
Sbjct: 340 IGEKCIVHRYERLNPLQVMDKSMKGRFGNLQKGDAIVAFSKVSIHQLKAGIEKETGRRCA 399
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V+YG+LPPETR QA LFND +N++D LVASDA+GMGLNL ++RV+F S K++G P
Sbjct: 400 VVYGSLPPETRASQAALFNDPNNDYDFLVASDAIGMGLNLEVKRVIFESSFKFDGTAFRP 459
Query: 546 VPGSQVKQIAGRAGRRGSIYPD----------GLTTTLNLDDLDYLIECLKQPFEVVKKV 595
+ ++KQI GRAGR + + GL + L+ +DL + + + +
Sbjct: 460 LTIPEIKQIGGRAGRYRTAAQEMTGDTSKPAPGLVSALDDEDLQMINDAFQTEAPPIPTA 519
Query: 596 GLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGL 654
G+FP +E F T +L + E RL + +C + ++A++++ L
Sbjct: 520 GIFPPPSVIERFHSYFPPRTPISFVLARLREMSRLSPRFHMCDFSVVLQIADIIQPYD-L 578
Query: 655 SLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD---- 710
S+ DR F PVN+RDP+ + L FA ++ + G D E+LD
Sbjct: 579 SVSDRCVFLHVPVNLRDPRQVSALQAFAKCVAE-----LGSGRLLDFDVIDLEVLDEVRP 633
Query: 711 ------------LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
LE+ HQ ++MYLWLS+++ + VF +++ +A + E++ + + +
Sbjct: 634 SLPSEQVTYLHRLESLHQTITMYLWLSYRY-QGVF----QSQGLAFKVKEMVEEKIAD 686
>gi|315052550|ref|XP_003175649.1| ATP-dependent RNA helicase suv3 [Arthroderma gypseum CBS 118893]
gi|311340964|gb|EFR00167.1| ATP-dependent RNA helicase suv3 [Arthroderma gypseum CBS 118893]
Length = 771
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/477 (39%), Positives = 270/477 (56%), Gaps = 27/477 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P AR M+RKI H GPTNSGKTY+ALQR +AK G Y PLRLLA E++
Sbjct: 188 ADFRYPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYS 247
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC---TVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++N G+ C+L+TG E + VP S + TVEMV + +V VIDEIQM++D RG+
Sbjct: 248 RLNKKGISCALITGDEVR-VPESGPVKVYSNTVEMVPIGQEVEVGVIDEIQMIADPHRGW 306
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + ++R++ S GD L +Y+R PL A +L GD+R
Sbjct: 307 AWTRAVLGCQAQELHLCGEERAVPLIRRLVSLMGDTLEIHNYKRLNPLKTMASSLKGDIR 366
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 367 RLEKGDCIVAFSRVGIHSLKQEIEKTTGRRAAIVYGSLPAEIRAQQADLFNDPNNDYDFL 426
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
VASDA+GMGLNL+ +R++F S+ K I + S+VKQI GRAGR S
Sbjct: 427 VASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLSISEVKQIGGRAGRYRSAAQSSNSTNV 486
Query: 568 ------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLL 620
GL T L+ DL Y+ + E + G+ P ++ ++ T F +
Sbjct: 487 NEKENVGLVTCLDEADLPYIRAAMMAEAEPLDAAGILPLDSVIDSYSNMFPPDTPFGYIY 546
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
++ R D +F+C+ + +L+ +QGL++ D+ F AP+ DP +
Sbjct: 547 QRLERVSRTDSPFFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAPLRATDPVMARVIKA 606
Query: 681 FASSYSKNAPVSIAMGMP--------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
FA + + + +P K + +D E L LE H+ L +YLWL ++F
Sbjct: 607 FAECVGQQKSGRL-LDIPELDLEILDKPVSGDDKEYLRSLEALHRSLILYLWLGYRF 662
>gi|302406861|ref|XP_003001266.1| ATP-dependent RNA helicase SUV3 [Verticillium albo-atrum VaMs.102]
gi|261359773|gb|EEY22201.1| ATP-dependent RNA helicase SUV3 [Verticillium albo-atrum VaMs.102]
Length = 695
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 201/521 (38%), Positives = 296/521 (56%), Gaps = 49/521 (9%)
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D KR + M AD P WFP R ++R I H GPTNSGKTY+AL+ AK GIY
Sbjct: 159 DVTKRQKQM---ADFRYPMEWFPATRALQRTIHLHVGPTNSGKTYHALKALENAKSGIYG 215
Query: 325 SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDE 382
PLRLLA EV+ + A G C+++TG+E+++ ++ I+CTVEM + + DVAVIDE
Sbjct: 216 GPLRLLAHEVYARFTAKGKPCAMVTGEEQRIPEGVDNYFISCTVEMTPLNRLVDVAVIDE 275
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWT+ALLG+MA E+HLCG+ +D+V+ ICS GD+ YER PL
Sbjct: 276 IQMIGDPERGWAWTQALLGVMAKEVHLCGEERAVDLVKSICSALGDKCVVHRYERLSPLQ 335
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
K+L GDL + GD VVAFSR + +K AIE+ T C ++YG+LPPETR QQA L
Sbjct: 336 TMKKSLKGDLSKLEKGDAVVAFSRVGLHGLKKAIEEKTGKRCAIVYGSLPPETRAQQAAL 395
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG--- 559
FND DNE+D LVASDA+GMGLNL ++R++F + +K++G + S++KQI GRAG
Sbjct: 396 FNDPDNEYDFLVASDAIGMGLNLEVKRIIFETAAKFDGVNFRGLSTSEIKQIGGRAGRFR 455
Query: 560 --RRGSIYPD-----------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVEL 606
R+ + D GL TTL+ DL + E Q E ++ + P +E
Sbjct: 456 SARQAATSADGAETLVEKKNPGLVTTLDALDLPRVQEAFTQQAEPLEAAYINPPAFILER 515
Query: 607 FAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFA 665
F+ L T +L + E R+ + + +VA+++++ L++ +R + A
Sbjct: 516 FSEYLPPDTPLSFMLLRIRELARVSPMFLVDISSDALRVADIIQEFP-LTIHERLSILNA 574
Query: 666 PVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD--------------- 710
PV + +P ++ HL++ A+ N + G + D E+LD
Sbjct: 575 PVQLNEP-SVVHLVQAAA----NCLATRQGGALYDMQEIDLEILDATIADFDGDGRRYLR 629
Query: 711 -LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELL 750
+E H +++YLWLS++ FP ++A+A + EL+
Sbjct: 630 AIEVLHHSVTLYLWLSYR-----FPNVFSSQALAFHVKELV 665
>gi|320590452|gb|EFX02895.1| mitochondrial ATP-dependent RNA helicase [Grosmannia clavigera
kw1407]
Length = 780
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 202/537 (37%), Positives = 292/537 (54%), Gaps = 42/537 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P+ WFP R M+R I H GPTNSGKTY ALQ A+ GIY PLRLLA E++
Sbjct: 200 ADFRYPYEWFPATRSMQRTIHLHVGPTNSGKTYQALQALERARTGIYAGPLRLLAHEIYT 259
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
++ A G C+L+TG+E+++ + +CTVEM ++ DVAVIDEIQMM+D RG+A
Sbjct: 260 RMTAKGRACALITGEEQRIPEDGDSFFQSCTVEMTPLNKRVDVAVIDEIQMMADEDRGWA 319
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+ALLG+ A E+HLCG+ +D+VR +C+ GD+ YER L +K+L GD N
Sbjct: 320 WTQALLGVQAREVHLCGEDRAVDLVRALCARMGDKCVVHRYERLSALQTMSKSLRGDFGN 379
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+R GD VV+FSR + +K IEK T C ++YG+LPPETR QQA LFND DN++D LV
Sbjct: 380 LRKGDAVVSFSRVGLHTLKSGIEKMTGRRCAIVYGSLPPETRAQQAALFNDPDNDYDFLV 439
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY--------- 565
ASDA+GMGLNL I+RV+F + +K++G + S+++QI GRAGR +
Sbjct: 440 ASDAIGMGLNLEIKRVIFETATKHDGMSFRHLTVSEIRQIGGRAGRFRTASQAVKTAAAV 499
Query: 566 -----------------PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFA 608
G TL +DL + E ++ G+ P +E FA
Sbjct: 500 ASTPATTPATTLAKRWGTPGYVATLEDEDLSVVQGAFTTNAEPLQWAGIQPPTFAIERFA 559
Query: 609 GQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV 667
T F +L++ E R+ G + LC + VA++++ LS+ DR F AP
Sbjct: 560 RYFPPETPFSFILQRVRELSRISGRFRLCTPNESLDVADIIQPFP-LSIYDRCVFITAPC 618
Query: 668 NIRDP---KAMYHLLRFASSYSKNAPVSIA-MGMPKGSAKND-------AELLDLETKHQ 716
+RDP + + + R S S + I + + A D L LE H+
Sbjct: 619 ALRDPGQKEIIAAMARCVSQMSGGHLLDIPELNLEILDASRDDYHLGHQQYLARLEALHK 678
Query: 717 VLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQ 773
+++YLWLS+++ VF A + + + + + + L N + PE +Q L Q
Sbjct: 679 AITLYLWLSYRYV-GVFVSQDLAFHVKSLVEDKITEYLENLTFVPERQQQRAKTLRQ 734
>gi|452839024|gb|EME40964.1| hypothetical protein DOTSEDRAFT_91028 [Dothistroma septosporum
NZE10]
Length = 986
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 197/504 (39%), Positives = 279/504 (55%), Gaps = 55/504 (10%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P WFP R + R + H GPTNSGKTY+ALQR +AK G+Y PLRLLA EV+
Sbjct: 216 ADLRYPTEWFPATRTLHRTVHLHVGPTNSGKTYHALQRLEKAKSGVYAGPLRLLAHEVYS 275
Query: 337 KVNALGVYCSLLTGQEKKLVPFS-----NHI--ACTVEMVSTDEMYDVAVIDEIQMMSDA 389
++ A G CSL+TG+E++ V S H ACTVEMV ++ +VAVIDEIQM+ +
Sbjct: 276 RMTAKGKPCSLITGEERRAVDKSLKDDEEHTLSACTVEMVPLNKTMEVAVIDEIQMIGNP 335
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT+ALLG+ A E+HLCG+ + +++++C+ GD+L YER PL + +L
Sbjct: 336 ERGWAWTQALLGVKAKEVHLCGEARTVPLIKELCASVGDKLEIHRYERLSPLQMAESSLD 395
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
GDL +R GDC+V+FS I ++ IEK T +YG+LPPETR QA LFND +N+
Sbjct: 396 GDLTKLRKGDCIVSFSVMGIHALRRQIEKTTGRKVATVYGSLPPETRAAQARLFNDPNND 455
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR--------- 560
FD LVASDAVGMGLNL I+R++F + SK++G + + + +KQIAGRAGR
Sbjct: 456 FDYLVASDAVGMGLNLAIKRIIFETSSKFDGTQRRTLAIADIKQIAGRAGRFRTAAQASD 515
Query: 561 -----------RGSI-----------YPD--GLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
+G I +P+ GL TT+ D + ++ E ++ G
Sbjct: 516 APASEQDLTAAKGEIAAGPPSGKQGEFPENVGLVTTMERFDFPIVSAAMQSEPEPIQSAG 575
Query: 597 LFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLS 655
LFP +E F T F +L + E ++ + LC VA+++E V+GL+
Sbjct: 576 LFPPASVLERFTSYFPPGTPFSYMLTRLHELSQMHTRFHLCGLRDQIWVADLIEPVEGLT 635
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLL----RFASSYS-------KNAPVSIAMGMPKGSAKN 704
+ DR C +P + D HLL R ++ S K P+ I S +
Sbjct: 636 VADRNTICSSPASKADQDMWKHLLPAYARCIATQSGGNLFDIKELPLEILESEVSASREY 695
Query: 705 DAELLDLETKHQVLSMYLWLSHQF 728
L LE H+ + YLWLS++
Sbjct: 696 ---LRGLERLHKGIVNYLWLSYRM 716
>gi|295670045|ref|XP_002795570.1| ATP-dependent RNA helicase suv3 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284655|gb|EEH40221.1| ATP-dependent RNA helicase suv3 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 716
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 196/498 (39%), Positives = 280/498 (56%), Gaps = 43/498 (8%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
F ++ RA+ ADL W+P AR + R I H GPTNSGKTY+AL+R AK G
Sbjct: 131 FSSTLREQRAL---ADLRNATEWYPAARSLYRTIHLHVGPTNSGKTYHALKRLEAAKTGF 187
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYD 376
Y PLRLLA EV+ ++NA G+ CSL+TG E K+ +P +SN TVEMV + D
Sbjct: 188 YAGPLRLLAHEVYTRLNAKGIQCSLVTGDEVKISEGQIPGIYSN----TVEMVPLGQDVD 243
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM++D RG+AWTRALLG A E+HLCG+ V+ ++R + GD L HYE
Sbjct: 244 VGVIDEIQMIADPFRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDRLEIHHYE 303
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL K+L G+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R
Sbjct: 304 RLNPLKAMNKSLKGNLANLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIVYGSLPAEIR 363
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QQA+LFND +N++D LVASDA+GMGLNL+ +R++F S+ + + + SQ+KQI G
Sbjct: 364 SQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLSVSQIKQIGG 423
Query: 557 RAGR---------RGSIYPD-------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF 600
RAGR S P G T+L DL Y+ + L E + GL P
Sbjct: 424 RAGRYRPASHVTETDSCIPGKDAETNVGFVTSLEDVDLSYIRKALSAKPEPILSAGLLPP 483
Query: 601 FEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDR 659
++ F +N F +L++ +D ++F+ + ++A ++ ++GL ++D+
Sbjct: 484 DYVIKRFVEHFPANTPFSYVLQRLHNIALVDPNFFIADNQGRAQIAEAIDGIKGLGIDDK 543
Query: 660 FNFCFAPVNIRDPKAMYHLLRFASSYSKNA----------PVSIAMGMPKGSAKNDAELL 709
F AP ++RD + F ++N P+ I + K + + L
Sbjct: 544 MVFLSAPAHMRDHQMSTIFREFVRCVAENKSGDILDIGDLPLDI---LDKPVSGDKTYLA 600
Query: 710 DLETKHQVLSMYLWLSHQ 727
LET H+ L +YLWLS++
Sbjct: 601 TLETLHRSLVLYLWLSYR 618
>gi|340514593|gb|EGR44854.1| predicted protein [Trichoderma reesei QM6a]
Length = 786
Score = 338 bits (868), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 192/511 (37%), Positives = 294/511 (57%), Gaps = 30/511 (5%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D PH WFP R+M+R I H GPTNSGKTYNAL+ +K GIY PLRLLA EV+ +
Sbjct: 224 DFRFPHEWFPATRMMQRTIHVHVGPTNSGKTYNALKALENSKCGIYAGPLRLLATEVYQR 283
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
A + C+L+TG+E ++ ++ +CTVEM+ + +DVAVIDEIQM++D RG AW
Sbjct: 284 FKAKNIPCALITGEEVRIPEDADQYFSSCTVEMMPLNSRFDVAVIDEIQMIADHDRGNAW 343
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T A+LG+ A E+H+CG+ ++V++ +C+ GD+ YER PL K L GD ++
Sbjct: 344 TTAVLGVQAKEVHVCGEERAVNVIKAMCASIGDKCVVHRYERLSPLKTMDKALNGDYSSL 403
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GD +VAFSR + +K IE+ T C +IYG+LPPE R QQA LFND +N++D +VA
Sbjct: 404 QKGDAIVAFSRLNLHSLKQRIEEKTGRRCAIIYGSLPPEVRAQQAALFNDPNNDYDFVVA 463
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRAGR-RGSIYPD----- 567
SDA+GMGLNL IRRVV S++K++G ++++ P ++KQI GRAGR R + PD
Sbjct: 464 SDAIGMGLNLEIRRVVLESVTKFDGSQNRLLTFP--EIKQIGGRAGRYRSAQNPDGSTDE 521
Query: 568 ----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEK 622
GL TT++ DL + ++ + ++ + P VE FA T +L+K
Sbjct: 522 TEKVGLVTTMDKADLRSVQRAFQRTVDDIEAACIQPPAGIVERFASYFPPDTPLSYILKK 581
Query: 623 FGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKA---MYHLL 679
E + Y + + I ++A++++ + L++ DR FC+ PV +R +A + L
Sbjct: 582 IQETATVSSLYRIGLGNDILEIADIIQDIP-LTIHDRMTFCYLPVALRAERAVEVLRALA 640
Query: 680 RFASSYSKNAPVSIA--------MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEE 731
R ++ SK + I + + + L LE+ H ++ Y+WLS+++
Sbjct: 641 RIVATNSKGDLLDIEEIPLEFLDISFEEFAGTGQQYLSKLESLHVAVNQYVWLSYRYA-G 699
Query: 732 VFPYAKKAEAMATDIAELLGQSLTNANWKPE 762
VF A + T + E L ++L N+ E
Sbjct: 700 VFRSQALAFHVRTLVEEKLMETLERLNYSDE 730
>gi|296815444|ref|XP_002848059.1| ATP-dependent RNA helicase suv3 [Arthroderma otae CBS 113480]
gi|238841084|gb|EEQ30746.1| ATP-dependent RNA helicase suv3 [Arthroderma otae CBS 113480]
Length = 752
Score = 338 bits (867), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 272/477 (57%), Gaps = 27/477 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P AR M+RKI H GPTNSGKTY+ALQR +AK G Y PLRLLA E++
Sbjct: 170 ADFRFPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYS 229
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI---ACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++N G+ C+L+TG E + VP + + + TVEMV + +V VIDEIQM++D RG+
Sbjct: 230 RLNKKGISCALITGDEVR-VPEGDPVKIFSNTVEMVPIGQEVEVGVIDEIQMIADPHRGW 288
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + ++R++ S GD L +Y+R PL A +L GD++
Sbjct: 289 AWTRAVLGCQAQELHLCGEERAVPLIRRLVSLMGDTLEIHNYKRLNPLKTMASSLKGDIK 348
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDCVVAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 349 RLEKGDCVVAFSRVGIHSLKQEIEKTTGRRAAIVYGSLPAEIRAQQADLFNDPNNDYDFL 408
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPD----- 567
VASDA+GMGLNL+ +R++F S+ K I + S+VKQI GRAGR R + P
Sbjct: 409 VASDAIGMGLNLSCKRIIFESVMKRLPTGIQRLSISEVKQIGGRAGRYRSAAQPSNSSKN 468
Query: 568 ------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLL 620
GL T L+ DL Y+ + + + G+ P ++ ++ T F +
Sbjct: 469 DDKENVGLVTCLDEADLPYIRAAMMAEPQPLDAAGILPLDSAIDNYSNMFPPDTPFGYVY 528
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
++ R D +F+C+ + +L+ +QGL+ D+ F AP+ DP +
Sbjct: 529 QRLERVARTDSPFFMCKIQDTEATFGLLDNIQGLNAIDKMVFMSAPLRATDPVMARVIRA 588
Query: 681 FASSYSKNAPVSIAMGMP--------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
FA + + + +P K + +D E L LE H+ L +YLWL ++F
Sbjct: 589 FAECVGQQKSGGL-LDIPELDLEILDKPVSGDDKEYLRSLEALHRSLILYLWLGYRF 644
>gi|405119868|gb|AFR94639.1| mitochondrial RNA helicase [Cryptococcus neoformans var. grubii
H99]
Length = 828
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 211/535 (39%), Positives = 285/535 (53%), Gaps = 68/535 (12%)
Query: 272 AMIESADLTK--PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
+++ + DLT+ T F +R +KR H GPTNSGKTYNAL+ A G Y PLRL
Sbjct: 194 SILSATDLTRLIHSTDFLPSRAIKRHFHLHIGPTNSGKTYNALKALSIATTGAYAGPLRL 253
Query: 330 LAMEVFDKVN--------ALGVYCSLLTGQEKKLV-PFSNHIACTVEMVSTDEM----YD 376
LA EV++++N G C+LLTG+E+++V P + ++CTVEM+ + +D
Sbjct: 254 LAHEVWERMNLGSVGGLDGKGRECNLLTGEERRVVHPDAGLLSCTVEMLPLAGLSGTGFD 313
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM+ D RG AWT+A+LG+ A EIHLCGD + +D++R + + GD+L Y
Sbjct: 314 VVVIDEIQMLGDGQRGGAWTKAVLGVAAKEIHLCGDETTVDLLRGMIAFLGDDLTVHQYN 373
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL V ++L D V GDC+V FSR IFEVK +E C V+YGALPPETR
Sbjct: 374 RLTPLSVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALPPETR 433
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
+QA FND+D VLVASDAVGMGLNL IRR++F SLSK+NG +P+ Q+KQIAG
Sbjct: 434 AEQARDFNDEDGASKVLVASDAVGMGLNLKIRRIIFESLSKFNGKSQVPLSLMQIKQIAG 493
Query: 557 RAGR----------RGSIYPD------GLTTTLNLDDLDYLIECLKQPFEVVKKVGL-FP 599
RAGR PD G+ TTL DDL L E + + + L P
Sbjct: 494 RAGRFKTGNDLTKISNISAPDEAPAAGGIATTLAKDDLPILKELMTWSLPSISRAKLEIP 553
Query: 600 FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG-LSLED 658
V+L ++ T+ +LL F + S + HDH +A ++E + LSL +
Sbjct: 554 TSGLVQLSTLLPASTTYAELLSHFSALAKPPSSTIIAAHDHKLPLAELVEPFRDRLSLGE 613
Query: 659 RFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV---SIAMGM------------------ 697
FCFAPVN RD +A + Y++ V +I G+
Sbjct: 614 MDLFCFAPVNTRDERAKEIFVNLIEDYAEEGCVLIDNIFEGLQTNMLDTLDQVHEILVTL 673
Query: 698 ----PKGSAKNDA---------ELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKA 739
P G A + L LET H+ L +Y+WLS + E FP KA
Sbjct: 674 PPMPPPGQAGSKKASIPPFIINSLPVLETLHKTLVLYIWLSFRL-EVAFPDRPKA 727
>gi|403337506|gb|EJY67972.1| hypothetical protein OXYTRI_11514 [Oxytricha trifallax]
Length = 901
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 210/622 (33%), Positives = 317/622 (50%), Gaps = 118/622 (18%)
Query: 246 DAVKFLF------PIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYH 299
D KF++ ++ +F + F ++ + + ++ DLT PH WFP R MKRKI YH
Sbjct: 212 DKRKFMYRAKPYIELYTDFILRYFKEQFENSQQLVSMTDLTMPHEWFPETRKMKRKIFYH 271
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFS 359
GPTNSGKT A+QR MEAK G+YC+PLRLLA E+ + ++ G+ C+L+TGQEK+L+ S
Sbjct: 272 MGPTNSGKTRGAIQRLMEAKSGLYCAPLRLLAWEISETLSNYGIPCNLITGQEKQLMVDS 331
Query: 360 NHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVV 419
+H++CTVEM Y+VAVIDEIQM+ D RGYAWT ALLGL A EIH+ G+ L ++
Sbjct: 332 HHLSCTVEMADLQNEYEVAVIDEIQMIDDPERGYAWTNALLGLKAHEIHIVGEERALSLI 391
Query: 420 RKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKH 479
++ +TGDEL +YER L VE KT+ +SGDC++AFSRRE+F++K + KH
Sbjct: 392 DRMVQDTGDELFINNYERLSTLQVEHKTIRS-FSEFKSGDCIIAFSRRELFQIKSQLNKH 450
Query: 480 TN---------------HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
+HC +IYGALPPE+++ QA +FN++ + LVA+DA+GMGLN
Sbjct: 451 IRGQQQDKEQKQNDEEVNHCAIIYGALPPESKKNQAFMFNNRVGDIKYLVATDAIGMGLN 510
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584
L+I+R++F +LSK + V +KQIAGRAGR DG T DL + +
Sbjct: 511 LSIKRIIFSTLSKRVKGRTEQVNEFHIKQIAGRAGR---YIEDGYVTAFRDRDLQQIRQV 567
Query: 585 L-----KQPFEVVK----------------------------------KVGLFPFFEQVE 605
+ K+ EV + K ++ E E
Sbjct: 568 VGKYEKKKGNEVNEETTSQAEESSQRKNRREENLVMDSEEEQELGEEVKTKMYNSIEMEE 627
Query: 606 LF------AGQLSNYTFCQLLEKFGENCRL----------DGSYFLCRHDH-----IKK- 643
+F +L N F +L + C D YF + H I+K
Sbjct: 628 VFDENTIPIEKLKNRQFTKLQQHISRACLFPPFQMIQQFADDLYFSDKKQHRLSEVIQKF 687
Query: 644 -----------VANMLE-KVQGLSLED--------RFNFCFAPVNI-----RDPKAMYHL 678
+ N LE ++ SLED ++ F +P+ + + + + L
Sbjct: 688 EFLARLGQNYFIKNNLEIRILSDSLEDIPNFSLKDQYTFSLSPMKVPLNQRKKVRKLSQL 747
Query: 679 LRFASSYSKNAPV------SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
FA ++ V +I+ + ++ ++ +L LE H +L +YLWL H++ E
Sbjct: 748 RSFAEQFAAYGRVDLPPDFNISNIILNKTSYDENDLDTLEEMHNILEVYLWLGHKY-ESA 806
Query: 733 FPYAKKAEAMATDIAELLGQSL 754
F +A ++ +++ Q L
Sbjct: 807 FAEMDLCRIIAENVIKIIDQIL 828
>gi|226293916|gb|EEH49336.1| ATP-dependent RNA helicase suv3 [Paracoccidioides brasiliensis
Pb18]
Length = 761
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 195/498 (39%), Positives = 279/498 (56%), Gaps = 43/498 (8%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
F ++ RA+ ADL W+P AR + R I H GPTNSGKTY+AL+R AK G
Sbjct: 176 FSSTLREQRAL---ADLRNATEWYPAARSLYRTIHLHVGPTNSGKTYHALKRLEAAKTGF 232
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYD 376
Y PLRLLA EV+ ++NA G+ C L+TG E K+ +P +SN TVEMV + D
Sbjct: 233 YAGPLRLLAHEVYTRLNAKGITCGLVTGDEVKISEGQIPGIYSN----TVEMVPLGQDVD 288
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM++D RG+AWTRALLG A E+HLCG+ V+ ++R + GD L HYE
Sbjct: 289 VGVIDEIQMIADPFRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDRLEIHHYE 348
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL K+L G+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R
Sbjct: 349 RLNPLKAMNKSLKGNLANLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIVYGSLPAEIR 408
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QQA+LFND +N++D LVASDA+GMGLNL+ +R++F S+ + + + SQ+KQI G
Sbjct: 409 SQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLSVSQIKQIGG 468
Query: 557 RAGR---------RGSIYPD-------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF 600
RAGR S P G T+L DL Y+ + L E + GL P
Sbjct: 469 RAGRYRPASNVTETDSSIPGKDAETNVGFVTSLEDVDLSYIRKALSAEPEPILSAGLLPP 528
Query: 601 FEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDR 659
++ F +N F +L++ +D ++F+ + ++A ++ ++GL ++D+
Sbjct: 529 DYVIKRFVEHFPANTPFSYVLQRLHNIALVDPNFFIADNQGRAQIAEAIDGIKGLGIDDK 588
Query: 660 FNFCFAPVNIRDPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDAELL 709
F AP ++RD + F ++N P+ I + K + + L
Sbjct: 589 MVFLSAPAHMRDHQMSTIFREFVRCVAENRSGDILDIGDLPLDI---LDKPVSGDKTYLA 645
Query: 710 DLETKHQVLSMYLWLSHQ 727
LET H+ L +YLWLS++
Sbjct: 646 TLETLHRSLVLYLWLSYR 663
>gi|406868649|gb|EKD21686.1| hypothetical protein MBM_00799 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1001
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 207/556 (37%), Positives = 303/556 (54%), Gaps = 70/556 (12%)
Query: 221 KFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLT 280
+ R+ FIK+ +V L D +KF F E E+F + + + ADL
Sbjct: 248 RLRTAFIKR-------NMVGLA---DEMKFAF--MKEMSTEQFAEHHATHQQKL--ADLR 293
Query: 281 KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA 340
P WFP R ++R + H GPTNSGKTY+ALQR A GIY PLRLLA EV+ ++NA
Sbjct: 294 YPLEWFPATRALQRTVHLHIGPTNSGKTYHALQRLEAADSGIYAGPLRLLAHEVYTRLNA 353
Query: 341 LGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
G C+L+TG+E+++ + +CTVEMV + DVAVIDEIQMM D RG+AWT+A
Sbjct: 354 KGKPCALITGEERRIPENFPSVMNSCTVEMVPLNCTVDVAVIDEIQMMGDDERGWAWTQA 413
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG 458
LG+MA E+HLCG+ +++ +C+ GD+L YER PL + +L GDLRN+ G
Sbjct: 414 FLGVMAKEVHLCGETRTREIITDLCAAMGDKLVVHEYERLSPLKTQDHSLNGDLRNLEKG 473
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
D ++ FSR I +K +E+ T V+YG+LPPETR QQA LFND +N++D LVASDA
Sbjct: 474 DAIILFSRVAIHAMKQDVERITGKRAAVVYGSLPPETRAQQAALFNDPNNDYDYLVASDA 533
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---------RGS------ 563
VGMGLNL+I+RV+F + SK++G + ++KQIAGRAGR +G
Sbjct: 534 VGMGLNLSIKRVIFETTSKHDGVAHRIIKNHEIKQIAGRAGRFKTAQQAIDKGKDGDEQV 593
Query: 564 IYP------------DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
+ P G+ TTL DL + ++ + G+FP + + FA
Sbjct: 594 VDPLQLDTVKKPSPAGGMVTTLENFDLPIVRRAMRASVPPLASAGIFPPGDILLRFANYF 653
Query: 612 SNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
T F ++ + + L + LCR K+A+ +++ LS DR + AP+++R
Sbjct: 654 PPKTPFSYIILRLHDMASLGSHFHLCRLKDQIKIADAIQEFD-LSNMDRISLMSAPMSMR 712
Query: 671 DPKAMYHLLRFAS--SYSKNAPVSIAMGMPKGSAKNDAELL----------------DLE 712
D ++ + A+ + KN + + + +P D ELL D E
Sbjct: 713 DHGSIDFIKELANCIAEQKNGAL-LDLQVP------DLELLDRDIHDHANGSKGYLKDAE 765
Query: 713 TKHQVLSMYLWLSHQF 728
H+ L++YLWLS++F
Sbjct: 766 MLHRQLTLYLWLSYRF 781
>gi|358396700|gb|EHK46081.1| hypothetical protein TRIATDRAFT_88541 [Trichoderma atroviride IMI
206040]
Length = 762
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 197/536 (36%), Positives = 296/536 (55%), Gaps = 31/536 (5%)
Query: 268 KRFRAMIESA-----DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
+RF IE + D P+ WFP R M+R I H GPTNSGKTYNAL+ +K G+
Sbjct: 186 QRFPKNIEDSHKRLLDFRFPYEWFPATRTMQRTIHVHVGPTNSGKTYNALKALESSKCGV 245
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVI 380
Y PLRLLA EV+ + A + C+L+TG+E ++ ++ +CTVEM+ + +DVAVI
Sbjct: 246 YAGPLRLLATEVYQRFKAKNIPCALITGEEVRIPENTDQYFSSCTVEMIPLNTRFDVAVI 305
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM++DA RG AWT A+LG+ A E+H+CG+ + V++++C+ GD+ YER P
Sbjct: 306 DEIQMIADADRGNAWTAAVLGVQAKEVHVCGEERAVKVIQQMCASVGDKCVVHRYERLSP 365
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L K L D ++ GD +VAFSR + +K +IE+ T C +IYG+LPPE R QQA
Sbjct: 366 LKTMDKPLDNDYNLLQKGDAIVAFSRVNLHSLKTSIERKTGRRCAIIYGSLPPEVRAQQA 425
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
LFND DN++D +VASDA+GMGLNL IRRV+ S++K++G + + ++KQI GRAGR
Sbjct: 426 ALFNDPDNDYDFVVASDAIGMGLNLEIRRVIMESVTKFDGSQNRLLTFPEIKQIGGRAGR 485
Query: 561 -RGSIYPD---------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQ 610
R + PD GL TT+ DL + ++ E ++ + P VE FA
Sbjct: 486 YRSAQNPDGSTDESEKVGLVTTMERADLRSVQRAFQRTVEDIQAACIQPPAGIVERFASY 545
Query: 611 LSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNI 669
T +L+K E + Y + I ++A++++ + L++ DR FC+ PV +
Sbjct: 546 FPTDTPLSYILKKIQETATVSSLYKMGLGSDILEIADIIQDIP-LTIHDRLTFCYLPVAL 604
Query: 670 RDPKAMYHLLRFASSYSKNA----------PVSIAMGMPKG-SAKNDAELLDLETKHQVL 718
R +A+ L A + N+ P+ P+ S L LE H L
Sbjct: 605 RADRAVDVLRALAQVVATNSKGDLLDIEEIPLEFLDINPEDFSGSGQQYLSKLEALHVAL 664
Query: 719 SMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQ 774
+ Y+WLS+++ +F A + T + E L ++L N+ E + + QQ
Sbjct: 665 NQYVWLSYRY-SGMFRSQALAFHVRTLVEEKLMKTLEWLNYSDEQLERKRESKRQQ 719
>gi|19115541|ref|NP_594629.1| mitochondrial ATP-dependent RNA helicase Rpm2 [Schizosaccharomyces
pombe 972h-]
gi|74676199|sp|O94445.1|SUV3_SCHPO RecName: Full=ATP-dependent RNA helicase suv3, mitochondrial;
Flags: Precursor
gi|4056555|emb|CAA22590.1| mitochondrial ATP-dependent RNA helicase Rpm2 [Schizosaccharomyces
pombe]
Length = 647
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 270/470 (57%), Gaps = 24/470 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DL P W+P AR ++R II H GPTNSGKT+ AL+R KKGI+ PLRLLA E+++
Sbjct: 155 TDLKNPIEWYPGARKLRRHIIMHVGPTNSGKTHRALERLKTCKKGIFAGPLRLLAHEIYN 214
Query: 337 KVNALGVYCSLLTGQE-KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
++ A G+ C+L TG+E + PF ++CTVEM + +DVAVIDEIQMM+D RGYAW
Sbjct: 215 RLQANGIACNLYTGEEIRNDYPFPQVVSCTVEMCNLSTTFDVAVIDEIQMMADPSRGYAW 274
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T+ LLGL A EIHLCG+ SV+ +VR I T D+ YER PL V K+L G L +
Sbjct: 275 TQCLLGLQAKEIHLCGEESVVKLVRSIAKMTQDDFTVYRYERLNPLHVAEKSLNGKLSEL 334
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GDCVVAFSR+ IF +K I++ VIYG+LPPE R QQA+LFN + ++ ++L+A
Sbjct: 335 KDGDCVVAFSRKNIFTLKSKIDQALGKKSAVIYGSLPPEVRNQQASLFNSKSSDENILLA 394
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR---GSIYPDGLTTT 572
SDA+GMGLNL ++R+VF L K++G I +P Q+KQIAGRAGR GS G+ TT
Sbjct: 395 SDAIGMGLNLGVKRIVFSDLKKFSGVSTIDIPVPQIKQIAGRAGRHNPNGSKQSAGIVTT 454
Query: 573 LNLDDLDYLIECLKQP----FEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
L D L + P F FF + LF+ + + +++ + +
Sbjct: 455 LYQKDFAKLNRAMNLPTKNLFNACIGAKDDLFFRYLSLFSDDIPQKL---IFDRYFKLAK 511
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFC---------FAPVNIRDPKAMYHLL 679
+ + + L+ ++GL+++D+ +AP+ IR+ +
Sbjct: 512 TTTPFVVSEGALSTFIIEYLDHIKGLTIKDKIKLLGCPVLKHSKYAPLFIREIGCVIAQG 571
Query: 680 RFASSYS-KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ Y K+ P+ I + +G + EL LE H+++ Y+W S ++
Sbjct: 572 KRLQIYDLKSVPLEI---LERGIPTTETELQQLEQLHKLIVAYMWASIRY 618
>gi|213406782|ref|XP_002174162.1| ATP-dependent RNA helicase suv3 [Schizosaccharomyces japonicus
yFS275]
gi|212002209|gb|EEB07869.1| ATP-dependent RNA helicase suv3 [Schizosaccharomyces japonicus
yFS275]
Length = 663
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 199/495 (40%), Positives = 282/495 (56%), Gaps = 23/495 (4%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D+ PH +P AR M+RK I H GPTNSGKT+NA+ + KKGI+ PLRLLA E++ +
Sbjct: 173 DVEWPHDLYPPARSMRRKFIMHVGPTNSGKTHNAINKLKTCKKGIFAGPLRLLASEIYIR 232
Query: 338 VNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+NA G+ C+L+TG+E K + N +ACTVEM + YDVAVIDEIQ++SD RG+AW
Sbjct: 233 MNAEGIKCNLVTGEEVK-ADYENPQLLACTVEMADLHQQYDVAVIDEIQLISDENRGWAW 291
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T+ +LGL A EIHLCG+ S +++++K+ +T DE+ YER L V +L GDL NV
Sbjct: 292 TQCVLGLRAKEIHLCGEESAVELIKKLAEKTLDEVEVHRYERLNALRVSKTSLNGDLGNV 351
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GDCVVAFSRR IFE K +E+ N CCV+YG+LP E R+QQA FND +VL+A
Sbjct: 352 KDGDCVVAFSRRAIFEAKNTLEEFHNKKCCVVYGSLPLEIRKQQATDFNDPKIPANVLLA 411
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPD-----GL 569
SDAVGMGLNL+I+RVVF SL+K+ G +P +KQIAGRAGR + S D G
Sbjct: 412 SDAVGMGLNLSIQRVVFTSLAKFTGSSFEDIPVPLIKQIAGRAGRYKASNNQDEKQSAGE 471
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVG-LFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
T L + L L QP ++K+ G +FP E F + + L K
Sbjct: 472 VTCLYDYQMPILKRALSQPIRMLKQAGFMFPDDIWCEYFLTCPQDIPYSFLFRKMILLSN 531
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
+ +F C + +L+ ++ L++ +R P+ +R P + S
Sbjct: 532 IPPCFFHCLIKSQLPILEILKPIETLTIRERLLLTNIPIPLRWPTMKEFVYEIGEKLSLC 591
Query: 689 APVSI------AMGMPKGSAKNDAELL-DLETKHQVLSMYLWLSHQFKEEVFPYAKKAEA 741
PV + + + KN ++ L +E ++ L Y W+S + FP + EA
Sbjct: 592 TPVQLNDFEHFNLDVLNHKYKNQSDFLQQIELLYKKLDAYFWISLR-----FPCMFQTEA 646
Query: 742 MATDIAELLGQSLTN 756
A DI ++L + L +
Sbjct: 647 -AIDIKKILLKKLNS 660
>gi|225684290|gb|EEH22574.1| ATP-dependent RNA helicase SUV3 [Paracoccidioides brasiliensis
Pb03]
Length = 764
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 195/498 (39%), Positives = 279/498 (56%), Gaps = 43/498 (8%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
F ++ RA+ ADL W+P AR + R I H GPTNSGKTY+AL+R AK G
Sbjct: 179 FSSTLREQRAL---ADLRNATEWYPAARSLYRTIHLHVGPTNSGKTYHALKRLEAAKTGF 235
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYD 376
Y PLRLLA EV+ ++NA G+ C L+TG E K+ +P +SN TVEMV + D
Sbjct: 236 YAGPLRLLAHEVYTRLNAKGITCGLVTGDEVKISEGQIPGIYSN----TVEMVPLGQDVD 291
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM++D RG+AWTRALLG A E+HLCG+ V+ ++R + GD L HYE
Sbjct: 292 VGVIDEIQMIADPFRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDRLEIHHYE 351
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL K+L G+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R
Sbjct: 352 RLNPLKAMNKSLKGNLANLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIVYGSLPAEIR 411
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QQA+LFND +N++D LVASDA+GMGLNL+ +R++F S+ + + + SQ+KQI G
Sbjct: 412 SQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLSVSQIKQIGG 471
Query: 557 RAGR---------RGSIYPD-------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF 600
RAGR S P G T+L DL Y+ + L E + GL P
Sbjct: 472 RAGRYRPASNVTETDSSIPGKDAETNVGFVTSLEDVDLSYIRKALSAEPEPILSAGLLPP 531
Query: 601 FEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDR 659
++ F +N F +L++ +D ++F+ + ++A ++ ++GL ++D+
Sbjct: 532 DYVIKRFVEHFPANTPFSYVLQRLHNIALVDPNFFIADNQGRAQIAEAIDGIKGLGIDDK 591
Query: 660 FNFCFAPVNIRDPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDAELL 709
F AP ++RD + F ++N P+ I + K + + L
Sbjct: 592 MVFLSAPAHMRDHQMSTIFREFVRCVAENRSGDILDIGDLPLDI---LDKPVSGDKTYLA 648
Query: 710 DLETKHQVLSMYLWLSHQ 727
LET H+ L +YLWLS++
Sbjct: 649 TLETLHRSLVLYLWLSYR 666
>gi|347839231|emb|CCD53803.1| hypothetical protein [Botryotinia fuckeliana]
Length = 840
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 203/545 (37%), Positives = 292/545 (53%), Gaps = 64/545 (11%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P R M+R H GPTNSGKTY+ALQ+ A GIY PLRLLA EV+
Sbjct: 205 ADFRYPIEWYPATRAMQRTFHLHVGPTNSGKTYHALQKLEAANSGIYAGPLRLLAHEVYT 264
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ NA G CSL+TG+E+++ + +CTVEMV + DVAVIDEIQM+ D RG+A
Sbjct: 265 RFNAKGKPCSLITGEERRIPEGAKDTMKSCTVEMVPLNSKVDVAVIDEIQMIGDEERGWA 324
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG---- 450
WT+A+LG+ A E+HLCG+ D+++K+C+ GD+L +YER L V AK+L
Sbjct: 325 WTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMGDKLIIHNYERLGKLQVMAKSLTSRHSE 384
Query: 451 ----------DLRNVRSGDCVVAFSRREIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQ 499
+ + GD V+ FSR I +K AIE H C ++YG+LPPETR QQ
Sbjct: 385 RDGPSGKESTPVSKLEKGDAVILFSRMRIHAMKNAIEAHHRGKRCAIVYGSLPPETRAQQ 444
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A LFND DN++D LVAS+AVGMGLNL+I+RV+ S+ ++NG + +P S++KQIAGRAG
Sbjct: 445 AALFNDPDNDYDFLVASNAVGMGLNLSIKRVILESVKRHNGTDFMTLPISEIKQIAGRAG 504
Query: 560 R----RGSIY-----------------PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
R R +I P GL TT D + L + + + G+F
Sbjct: 505 RYKTARDAIEAGPIDVADGIPTKPTEPPVGLVTTFFKTDHEILSSAMSKEAAQMTTAGIF 564
Query: 599 PFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
P +E FA T F ++ + E L + LC+ +A+++++ L++
Sbjct: 565 PPANVIERFAEYFPKSTPFSYVILRLHELGSLSSEFHLCQLKEQAAIADIIQEFD-LTIR 623
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD------- 710
+R F APV++RDP + + FA S N I ++ ELLD
Sbjct: 624 NRLIFLAAPVSLRDPGVVNVVKAFARCVSNNTGGHIL-----NISELSLELLDEDPDTFT 678
Query: 711 -----------LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANW 759
+E H+ +++YLWLS++F VF A + + E + L A W
Sbjct: 679 RQNEREMYVRSIERLHKNITLYLWLSYRFT-GVFHSQALAFHIKGLVEEKIDLCLAKAEW 737
Query: 760 KPESR 764
+ ++R
Sbjct: 738 QEKAR 742
>gi|326474037|gb|EGD98046.1| mitochondrial ATP-dependent RNA helicase [Trichophyton tonsurans
CBS 112818]
Length = 772
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 270/477 (56%), Gaps = 27/477 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P AR M+RKI H GPTNSGKTY+ALQR +AK G Y PLRLLA E++
Sbjct: 188 ADFRYPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYS 247
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC---TVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++N G+ C+L+TG E + VP S + TVEMV + +V VIDEIQM++D RG+
Sbjct: 248 RLNKKGISCALITGDEVR-VPESGPVKVYSNTVEMVPIGQEVEVGVIDEIQMIADPHRGW 306
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + +++++ S GD L +Y+R PL A +L GD+R
Sbjct: 307 AWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMGDTLEIHNYKRLNPLKTMASSLKGDIR 366
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 367 RLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIVYGSLPAEIRAQQADLFNDPNNDYDFL 426
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
VASDA+GMGLNL+ +R++F S+ K I + S+VKQI GRAGR S
Sbjct: 427 VASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLSISEVKQIGGRAGRYRSAAQSSSSTNA 486
Query: 568 ------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLL 620
GL T L+ DL Y+ + E + G+ P ++ ++ T F +
Sbjct: 487 NEKENVGLVTCLDEADLPYIRAAMLAEAEPLDAAGILPLDSVIDNYSNMFPPDTPFGYIY 546
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
++ R D +F+C+ + +L+ +QGL++ D+ F AP+ DP +
Sbjct: 547 QRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAPLRATDPVMARVIKA 606
Query: 681 FASSYSKNAPVSIAMGMP--------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
FA + + + +P + + +D E L LE H+ L +YLWL ++F
Sbjct: 607 FAECVGQQKSGRL-LDIPELDLEILDRPVSGDDKEYLRSLEALHRSLILYLWLGYRF 662
>gi|58265860|ref|XP_570086.1| RNA helicase like protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110290|ref|XP_776201.1| hypothetical protein CNBD0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258871|gb|EAL21554.1| hypothetical protein CNBD0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226319|gb|AAW42779.1| RNA helicase like protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 828
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 207/535 (38%), Positives = 282/535 (52%), Gaps = 68/535 (12%)
Query: 272 AMIESADLTK--PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
+++ + DLT+ T F +R +KR H GPTNSGKTYNAL+ A G Y PLRL
Sbjct: 194 SILSATDLTRLTHSTDFLPSRAIKRHFHLHIGPTNSGKTYNALKALSMANTGAYAGPLRL 253
Query: 330 LAMEVFDKVN--------ALGVYCSLLTGQEKKLV-PFSNHIACTVEMVSTDEM----YD 376
LA EV++++N G C+LLTG+E+++V P + ++CTVEM+ + +D
Sbjct: 254 LAHEVWERMNLGSVGGLDGKGRECNLLTGEERRVVHPDAGLLSCTVEMLPLAGLSGTGFD 313
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM+ D RG AWT+A+LG+ A EIHLCGD + ++++R I + GD+L Y
Sbjct: 314 VVVIDEIQMLGDGQRGGAWTKAVLGVAAKEIHLCGDETTVELLRGIIASLGDDLTVHQYN 373
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL V ++L D V GDC+V FSR IFEVK +E C V+YGALPPETR
Sbjct: 374 RLTPLSVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALPPETR 433
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
+QA FND+ +LVASDAVGMGLNL IRR++F SLSK+NG +P+ Q+KQIAG
Sbjct: 434 AEQARDFNDEAGASKILVASDAVGMGLNLKIRRIIFESLSKFNGKSQVPLSLMQIKQIAG 493
Query: 557 RAGR----------RGSIYPD------GLTTTLNLDDLDYLIECLKQPFEVVKKVGL-FP 599
RAGR PD G+ TTL DDL L E + + + L P
Sbjct: 494 RAGRFKTGNDLTKISNIAAPDEAPAAGGVATTLAKDDLPILKELMTWSLPSISRAKLEIP 553
Query: 600 FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG-LSLED 658
V+L ++ T+ +LL F + + HDH +A ++E + LSL +
Sbjct: 554 TNGLVQLSTLLPASTTYAELLSHFSALAKPPSLTVIAAHDHKLPLAELVEPFRDRLSLGE 613
Query: 659 RFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI------------------------- 693
FCFAPVN RD +A + Y++ V +
Sbjct: 614 MDLFCFAPVNTRDERAKEIFVNLIEDYAEEGCVLVDNIFEGLQTNMLDTLDQVHDILTTL 673
Query: 694 -AMGMPKGSAKNDA--------ELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKA 739
M +P +A A L LET H+ L +Y+WLS + E FP KA
Sbjct: 674 PPMPLPGHAASKKASIPPFIINSLPVLETLHKTLVLYIWLSFRL-EVAFPDRSKA 727
>gi|321262547|ref|XP_003195992.1| RNA helicase like protein [Cryptococcus gattii WM276]
gi|317462467|gb|ADV24205.1| RNA helicase like protein, putative [Cryptococcus gattii WM276]
Length = 828
Score = 335 bits (860), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 215/564 (38%), Positives = 292/564 (51%), Gaps = 69/564 (12%)
Query: 272 AMIESADLTK--PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
+++ + DLT+ T F +R +KR H GPTNSGKTYNAL+ A G Y PLRL
Sbjct: 194 SILSATDLTRLTHSTDFLPSRAIKRHFHLHIGPTNSGKTYNALKALSMANTGAYAGPLRL 253
Query: 330 LAMEVFDKVN--------ALGVYCSLLTGQEKKLV-PFSNHIACTVEMVSTDEM----YD 376
LA EV++++N G C+LLTG+E+++V P + ++CTVEM+ + +D
Sbjct: 254 LAHEVWERMNLGSVGGLDGKGRECNLLTGEERRVVHPDAGLLSCTVEMLPLAGLGGAGFD 313
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM+ D RG AWT+A+LG+ A +IHLCGD + +D++R + + GD+L Y
Sbjct: 314 VVVIDEIQMLGDGQRGGAWTKAVLGVAAKDIHLCGDETTVDLLRGMIASLGDDLTVHKYN 373
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL V ++L D V GDC+V FSR IFEVK +E C V+YGALPPETR
Sbjct: 374 RLTPLSVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALPPETR 433
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
+QA FND+D +LVASDAVGMGLNL IRRV+F SLSK+NG +P+ Q+KQIAG
Sbjct: 434 AEQARDFNDEDGASKILVASDAVGMGLNLKIRRVIFESLSKFNGKSEVPLSLMQIKQIAG 493
Query: 557 RAGRRGS----------IYPD------GLTTTLNLDDLDYLIECLKQPFEVVKKVGL-FP 599
RAGR + PD G+ TTL DDL L E + + + L P
Sbjct: 494 RAGRFKTGNDLTKISDIATPDEAPAAGGVATTLAKDDLPILKELMTWSLPSISRAKLEIP 553
Query: 600 FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG-LSLED 658
V+L ++ T+ +LL F + + HDH +A ++E + LSL +
Sbjct: 554 TSGLVQLSTLLPASTTYAELLSHFSALAKPPSLTVIAAHDHKLPLAELVEPFRDRLSLGE 613
Query: 659 RFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI------------------------- 693
FCFAPVN RD +A + Y++ V +
Sbjct: 614 MDLFCFAPVNTRDERAKEIFINLIEDYAEEGCVLVDNIFEGLQTNMLDILNQVHEILSTL 673
Query: 694 -AMGMPK--GSAKNDA------ELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMAT 744
M +P GS K L LET H+ L +Y+WLS + E FP KA
Sbjct: 674 PPMPLPGQIGSKKASIPPFIINSLPVLETLHKTLVLYIWLSFRL-EVAFPDRPKAVEYKV 732
Query: 745 DIAELLGQSLTN-ANWKPESRQAG 767
E+L L KP + G
Sbjct: 733 KCEEVLEDCLERMPGLKPSKKSKG 756
>gi|358383047|gb|EHK20716.1| hypothetical protein TRIVIDRAFT_171151 [Trichoderma virens Gv29-8]
Length = 629
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 197/536 (36%), Positives = 301/536 (56%), Gaps = 34/536 (6%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D PH WFP R M+R I H GPTNSGKTY AL+ +K G+Y PLRLLA EV+ +
Sbjct: 69 DFRFPHEWFPATRAMQRTIHVHVGPTNSGKTYRALKALENSKCGVYAGPLRLLATEVYQR 128
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
A + C+L+TG+E ++ ++ +CTVEM+ + +DVAVIDEIQM++DA RG AW
Sbjct: 129 FKAKNIPCALITGEEVRIPEDADQYFSSCTVEMIPLNTRFDVAVIDEIQMIADADRGNAW 188
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T A+LG+ A E+H+CG+ + V++ +C+ GD+ YER PL K L GD ++
Sbjct: 189 TSAVLGVQAKEVHVCGEERAVKVIQAMCASIGDKCVVHRYERLSPLKTMDKALNGDYNSL 248
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GD +VAFSR + +K IE++T C +IYG+LPPE R QQA LFND DN++D +VA
Sbjct: 249 QKGDAIVAFSRLNLHALKQRIEQNTGRRCAIIYGSLPPEVRAQQAALFNDPDNDYDFVVA 308
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPD------- 567
SDA+GMGLNL IRRV+ S++KY+G + + ++KQI GRAGR R + PD
Sbjct: 309 SDAIGMGLNLEIRRVILESVTKYDGSQNRLLTFPEIKQIGGRAGRYRSAQNPDGSADETE 368
Query: 568 --GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFG 624
GL TT++ DL + ++ + ++ + P VE FA T +L++
Sbjct: 369 KVGLVTTMDRADLKSVQRAFQKSVDDIEAACIQPPAGIVERFASYFPPDTPLSFILKRIQ 428
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
E + Y + I ++A++++ + L++ DR FC+ PV +R +A+ L A
Sbjct: 429 ETATVSSLYRIGLGSDILEIADIIQDIP-LTIHDRLTFCYLPVALRADRAIDVLRALAQV 487
Query: 685 YSKNA----------PVS-IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVF 733
+ N+ P+ + + M K + L LE+ H ++ Y+WLS+++ VF
Sbjct: 488 VATNSKGDLLDIEEIPLEYLDLKMEDFQVK-EKYLAKLESLHVAVNQYVWLSYRYS-GVF 545
Query: 734 PYAKKAEAMATDIAELLGQSLTNANWKP---ESRQAGKPKLHQQREDGYDRPRSII 786
A + + + E L ++L N+ E R+ K L + R D R++I
Sbjct: 546 RSQALAFHVRSLVEEKLMETLERLNFSDEHLERRRKTKRLLAKSR----DASRTVI 597
>gi|320167149|gb|EFW44048.1| SUPV3L1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 611
Score = 335 bits (859), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 249/397 (62%), Gaps = 4/397 (1%)
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDV 418
S+H+ACT+EM D+++DVAVIDE+Q++ D RG+AWTRALLGL A EIH+CG+P L +
Sbjct: 200 SSHVACTIEMADVDKVFDVAVIDEVQLIGDRDRGWAWTRALLGLAAHEIHVCGEPRALSI 259
Query: 419 VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK 478
V + TG+++ YER PLVV ++ +L N+R GD ++AFSR+E+F K IE+
Sbjct: 260 VESLLKSTGEDVQVHTYERLTPLVVAPHSINRNLANLRRGDAIIAFSRKELFRWKAEIER 319
Query: 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
T C ++YG+LPP+TR QQA LFN D+ FD+LVA+DA+GMGLNLNI R++F +L K+
Sbjct: 320 ETRFRCAIVYGSLPPQTRAQQARLFNQPDSGFDILVATDAIGMGLNLNIGRIIFTTLQKF 379
Query: 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
NG + + S+V+QIAGRAGR S +P G TT +D+ LI+ P + + + GL
Sbjct: 380 NGVSNVTLSPSEVRQIAGRAGRFRSKFPRGEFTTFEPEDMGILIKQFNGPADSL-QAGLM 438
Query: 599 PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLED 658
FEQ+E + QL L KF + RLD YF+C K+ +L + LS +D
Sbjct: 439 ANFEQLEALSKQLPGADMLDLFTKFEDLARLDKRYFMCDSSDRKEAIKLLAPLN-LSFKD 497
Query: 659 RFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-AMGMPKGSAKNDAELLDLETKHQV 717
R+ F AP N+ + LL FA+ + N P+++ A+ +P ++ + L + E H++
Sbjct: 498 RYTFILAPANLENDYMRSCLLSFATGFEANRPITLAAITVPSTTSGAPSVLNEFEQCHKM 557
Query: 718 LSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
L +Y+WLS++F ++FP A+ + AE + + L
Sbjct: 558 LDLYMWLSYRFP-QLFPDRDAAKQLQAQCAERIMEGL 593
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 19/158 (12%)
Query: 260 IEEFPDEIKRFRAMI-------ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNAL 312
++ F + R+RA +D+ +P + AR M+RK I+H GPTNSGKTY+AL
Sbjct: 1 MQAFGQDFVRYRATTLDQSVVSRISDMRQPQLTYHQARSMQRKFIFHAGPTNSGKTYSAL 60
Query: 313 QRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTD 372
+RF EA +GIYC+PLRLLA+EV+D N G+ C L+TG+++K + + D
Sbjct: 61 KRFREANRGIYCAPLRLLALEVYDDTNNHGIPCDLVTGEDRKSGKGRPDEPQELNDSALD 120
Query: 373 EMY--------DVAVIDEIQMMSDACRGYAWTRALLGL 402
++ DVA + I +M G A T A+LGL
Sbjct: 121 KLLRLPHLPKGDVASANPISLMD----GDASTAAILGL 154
>gi|50307239|ref|XP_453598.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642732|emb|CAH00694.1| KLLA0D12034p [Kluyveromyces lactis]
Length = 751
Score = 335 bits (858), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 196/507 (38%), Positives = 286/507 (56%), Gaps = 27/507 (5%)
Query: 246 DAVKFLFPIFVEFCIEE--FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPT 303
D F+ + F E+ P + + D++ P WFP AR +KR II H GPT
Sbjct: 186 DQYYFILKNYFSFIKEQEIIPQMTPSWSLVDRGLDISNPSEWFPEARKLKRTIIMHVGPT 245
Query: 304 NSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE--KKLVPFSNH 361
NSGKTYNALQ+ +G Y PLRLLA EV+D+ G+ C+LLTG+E + L N
Sbjct: 246 NSGKTYNALQKLKNCPRGYYAGPLRLLAREVYDRFQNEGIRCNLLTGEEVIEDLDAMGNP 305
Query: 362 ---IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDV 418
+ TVEM+ + +D+ V+DE+QM+S+ RG+AWT A+LG+ A EIHLCG+ SVL +
Sbjct: 306 AGLTSGTVEMIPLNRDFDICVLDEVQMLSEKDRGWAWTNAILGVRAKEIHLCGEESVLPL 365
Query: 419 VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK 478
+ KI TGD L YER L VE + L L+ ++SGDCV+AFS++ I ++K+ IEK
Sbjct: 366 MDKIVKLTGDTLVVNRYERLGKLEVEHQPLANGLKGLKSGDCVIAFSKKSILDLKLRIEK 425
Query: 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
TN V+YG+LPPETR +QA LFN E+D+LVASDA+GMGLNL+I RVVF + K+
Sbjct: 426 ETNLKVAVVYGSLPPETRVKQAKLFN--SGEYDILVASDAIGMGLNLSINRVVFTASYKF 483
Query: 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLT-------TTLNLDDLDYLIECLKQPFEV 591
NG +++P+ S +KQI GRAGR DG + T ++ D L + + + P +
Sbjct: 484 NGVEVVPLTFSNIKQIGGRAGRFKGKKADGSSKESIGHVTAIDEDILRDVRKGINAPIQY 543
Query: 592 VKKVGLFPFFEQV-ELFAGQLSNYTFCQLLEKFGENCRLDG--SYFLCRHDHIKKVANML 648
++K ++P E V +L + LL KF + S+ L D KV +
Sbjct: 544 LEKAVVWPTDELVNDLLSYYPPGMKLTVLLNKFKTDILKSSTKSFELSYIDDKSKVVSTF 603
Query: 649 EKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK-------NAPVSIAMGMPKGS 701
E ++GL+L+D+ APV I +P M +F + ++ N P+ M +
Sbjct: 604 EDMRGLTLKDKLRLSNAPVRI-NPMVMNIFKKFCETIAERRTMSLLNYPLPFLMLHSRHI 662
Query: 702 AKNDAELLDLETKHQVLSMYLWLSHQF 728
+ L E HQ++++Y WL ++
Sbjct: 663 KDENVSLEFYEEFHQLINLYCWLHIRY 689
>gi|326478234|gb|EGE02244.1| mitochondrial ATP-dependent RNA helicase Suv3 [Trichophyton equinum
CBS 127.97]
Length = 772
Score = 334 bits (857), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 270/477 (56%), Gaps = 27/477 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P AR M+RKI H GPTNSGKTY+ALQR +AK G Y PLRLLA E++
Sbjct: 188 ADFRYPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYS 247
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC---TVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++N G+ C+L+TG E + VP S + TVEMV + +V VIDEIQM++D RG+
Sbjct: 248 RLNKKGISCALITGDEVR-VPESGPVKVYSNTVEMVPIGQEVEVGVIDEIQMIADPHRGW 306
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + +++++ S GD L +Y+R PL A +L GD+R
Sbjct: 307 AWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMGDTLEIHNYKRLNPLKTMASSLKGDIR 366
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 367 RLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIVYGSLPAEIRAQQADLFNDPNNDYDFL 426
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
VASDA+GMGLNL+ +R++F S+ K I + S+VKQI GRAGR S
Sbjct: 427 VASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLSISEVKQIGGRAGRYRSAAQSSSSTNA 486
Query: 568 ------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLL 620
GL T L+ DL Y+ + E + G+ P ++ ++ T F +
Sbjct: 487 NEKENVGLVTCLDEADLPYIRAAMLAEAEPLDAAGILPLDFVIDNYSNMFPPDTPFGYIY 546
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
++ R D +F+C+ + +L+ +QGL++ D+ F AP+ DP +
Sbjct: 547 QRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAPLRATDPVMARVIKA 606
Query: 681 FASSYSKNAPVSIAMGMP--------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
FA + + + +P + + +D E L LE H+ L +YLWL ++F
Sbjct: 607 FAECVGQQKSGRL-LDIPELDLEILDRPVSGDDKEYLRSLEALHRSLILYLWLGYRF 662
>gi|2244836|emb|CAB10258.1| RNA helicase like protein [Arabidopsis thaliana]
gi|7268225|emb|CAB78521.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 442
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/327 (50%), Positives = 217/327 (66%), Gaps = 11/327 (3%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DLT PHTW+P AR KRK+I H GPTNSGKTY+AL+ ++ G+YC PLRLLA EV
Sbjct: 112 TDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEVAK 171
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQM----------M 386
++N V C L+TGQEK LV + H A TVEM +YD A+IDEIQ
Sbjct: 172 RLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQASLARLWLKKST 231
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
C G+A+TRALLG+ ADE+HLCGDP+V+ +V I TGD++ YER PLV K
Sbjct: 232 RTFCLGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPLV-PLK 290
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
+ + ++++GDC+V FSR++I+ K IE+ H C V+YG+LPPETR QA FND+
Sbjct: 291 VPVSSVSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDE 350
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYP 566
N+FDVLVASDA+GMGLNLNI R++F +L KY+G + + S++KQIAGRAGR S +P
Sbjct: 351 TNDFDVLVASDAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFP 410
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVK 593
G T L+ +DL L LK P +++
Sbjct: 411 IGEVTCLHKEDLPLLHSSLKSPSPILE 437
>gi|310795139|gb|EFQ30600.1| hypothetical protein GLRG_05744 [Glomerella graminicola M1.001]
Length = 761
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/480 (38%), Positives = 278/480 (57%), Gaps = 29/480 (6%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL PH WFP R ++R + H GPTNSGKTY ALQ AK GIY PLRLLA E++
Sbjct: 166 ADLRFPHEWFPATRAIQRTVHLHVGPTNSGKTYRALQALESAKSGIYGGPLRLLAHEIYS 225
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH-IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+ A G C+L+TG+E+++ N+ I+CTVEM + + DVAV+DEIQM+ ++ RG+AW
Sbjct: 226 RFQAKGKACALVTGEEQRIPDADNYFISCTVEMTPLNRLVDVAVLDEIQMIGNSERGWAW 285
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T+A LG+MA E+HLCG+ V+D+++ ICS GD+ Y+R PL ++L DL +
Sbjct: 286 TQAFLGVMAKEVHLCGEERVVDLIKSICSSIGDKCIVHRYQRLSPLQTMKESLGNDLTKL 345
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GD +VAF+R + +K AIE+ T C ++YG+LPPETR QQA LFND DN++D LVA
Sbjct: 346 QKGDAIVAFNRIHLHGLKNAIEEATGRRCAIVYGSLPPETRAQQAALFNDPDNDYDFLVA 405
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-----------RGSI 564
SDA+GMGLNL I+RV+F + +K++G + + S+VKQI GRAGR G+
Sbjct: 406 SDAIGMGLNLEIKRVIFETATKHDGTQFRTLTTSEVKQIGGRAGRFKTARQAATDHNGTA 465
Query: 565 YPD----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQL 619
+ + G TTL+ +DL + + ++ + P +E FA T +
Sbjct: 466 HIEGKKMGYVTTLDNEDLPIIEKAFNSETAPLEVASIHPPAFIIEQFAEYFPPDTPLSFI 525
Query: 620 LEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLL 679
L + E + Y + + K+A+ +++ +++++R AP+++R+ L
Sbjct: 526 LLRLRELAPVSERYTVHVPEDNLKIADAIQEFP-MTIQERITILHAPISLRESGQKEILQ 584
Query: 680 RFASSYSKNAPVSIAMGMPKGSAKNDAELLD-----------LETKHQVLSMYLWLSHQF 728
A S + ++ P DA L D +ET HQ +++YLW+S++F
Sbjct: 585 AIAKCISTRSDGALYDIGPINLELLDATLEDFNNQGRRYLHSIETLHQAITLYLWVSYRF 644
>gi|336270658|ref|XP_003350088.1| hypothetical protein SMAC_00978 [Sordaria macrospora k-hell]
gi|380095483|emb|CCC06956.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 792
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 194/536 (36%), Positives = 301/536 (56%), Gaps = 42/536 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P+ WFP R ++R I H GPTNSGKTYNAL+ AK GIY PLRLLA E+F
Sbjct: 194 ADLRFPYEWFPATRQLQRTIHLHVGPTNSGKTYNALKALENAKSGIYAGPLRLLAHEIFT 253
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G C+L+TG+E+++ ++ +CTVEM + DVAVIDEIQM++D RG+A
Sbjct: 254 RFIAKGKPCALITGEEQRIPENADMFFRSCTVEMTPLNWKVDVAVIDEIQMIADEHRGWA 313
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+A+LG A E+HLCG+ V+D+++++C+ GD+ Y+R PL+ + + D +N
Sbjct: 314 WTQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRYQRLNPLLPMEEAVGTDFKN 373
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GD V++FSR + +K IE T C ++YG+LPPETR QA LFND +NE+D LV
Sbjct: 374 LQKGDAVISFSRVNLHALKAGIEGATGRKCAIVYGSLPPETRAAQAALFNDPNNEYDFLV 433
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-------------- 560
ASDA+GMGLNL I+RVVF S K++G P+ +VKQI GRAGR
Sbjct: 434 ASDAIGMGLNLEIKRVVFESAFKFDGSTQRPLTIPEVKQIGGRAGRYRTANDAVCSGNEG 493
Query: 561 -------RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS- 612
+ G T ++ DL+++ + L + + + G+ P +E FA
Sbjct: 494 EASVTSAQSKWGAPGFVTAMDEQDLEHIKKHLLKDAKPITAAGIMPPSHIIERFASLFPP 553
Query: 613 NYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP 672
+ +L + E RL S+ +C + +++N+L++ LS+ DR APV++R+
Sbjct: 554 DIPLAFVLSRLREMARLSSSFNICSFGDVLEISNVLKEF-NLSIYDRSVLLTAPVSLRE- 611
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPK--------------GSAKNDAELLDLETKHQVL 718
+A +LR + N + +P+ A+ D L+ LE H+ +
Sbjct: 612 QAQKDVLRAFAWSIANLSGGHLLEIPEIDLEVLEVDPSALTALARKD-HLVRLEGLHKAV 670
Query: 719 SMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQ 774
++YLWLS++++ VF + A + + + E + L A++ E +Q + L +Q
Sbjct: 671 TLYLWLSYRYR-GVFISQQLAFHVKSLVEEKITNCLEAADFDAERQQKRREILRRQ 725
>gi|219113047|ref|XP_002186107.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582957|gb|ACI65577.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 306
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/297 (54%), Positives = 215/297 (72%), Gaps = 6/297 (2%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DLTKPH W+P AR+ +RK+IYH GPTNSGKTY AL+R A KG+Y PLRLLA E+++K
Sbjct: 7 DLTKPHEWYPHARLNRRKVIYHGGPTNSGKTYEALERLKLANKGMYLGPLRLLAAEIYEK 66
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+ A GVYC+L TGQE++ +PF+ H A TVEM S + +DV VIDEIQM+ D RG+AWTR
Sbjct: 67 LTAAGVYCNLYTGQERREIPFATHGAATVEMASVVDDFDVVVIDEIQMIEDQERGFAWTR 126
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL----- 452
ALLG A EIH+CG ++V +I GD+ + Y+RF L V + L L
Sbjct: 127 ALLGSRAKEIHVCGGLEAKEIVERIAKACGDDFELRTYKRFAELKVSVQCLAKSLKDVNS 186
Query: 453 -RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
+NV++GDC+VAFSR +IF +K IE T++ CCVIYG+LPPETR +QA FN+ ++ +D
Sbjct: 187 YKNVQAGDCIVAFSRNDIFAIKREIETATSYKCCVIYGSLPPETRSEQARRFNNPNSGYD 246
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG 568
+LVASDA+ MGLNL+IRR++F S+ K++G I+ + S VKQI+GRAGRR S+YP G
Sbjct: 247 ILVASDAIAMGLNLSIRRIIFNSMYKHDGTGIVRLGHSAVKQISGRAGRRNSLYPFG 303
>gi|336471022|gb|EGO59183.1| hypothetical protein NEUTE1DRAFT_128634 [Neurospora tetrasperma
FGSC 2508]
gi|350292099|gb|EGZ73294.1| hypothetical protein NEUTE2DRAFT_107697 [Neurospora tetrasperma
FGSC 2509]
Length = 796
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 193/535 (36%), Positives = 301/535 (56%), Gaps = 40/535 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P+ WFP R ++R I H GPTNSGKTYNAL+ AK GIY PLRLLA E++
Sbjct: 198 ADLRFPYEWFPATRQLQRTIHLHVGPTNSGKTYNALKALENAKSGIYAGPLRLLAHEIYT 257
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G C+L+TG+E+++ ++ +CTVEM + DVAVIDEIQM++D RG+A
Sbjct: 258 RFTAKGKSCALITGEEQRIPEDADMFFRSCTVEMTPLNWKVDVAVIDEIQMIADEHRGWA 317
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+A+LG A E+HLCG+ V+D+++++C+ GD+ Y+R PL+ + + D +N
Sbjct: 318 WTQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRYQRLNPLLPMEQAVGTDFKN 377
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GD V++FSR + +K IE+ T C ++YG+LPPETR QA LFND +NE+D LV
Sbjct: 378 LQKGDAVISFSRVNLHSLKAGIEEATGRKCAIVYGSLPPETRAAQAALFNDPNNEYDFLV 437
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY--------- 565
ASDA+GMGLNL I+RVVF S K++G P+ +VKQI GRAGR +
Sbjct: 438 ASDAIGMGLNLEIKRVVFESAFKFDGMAHRPLTIPEVKQIGGRAGRYRTATDAVRSGKEE 497
Query: 566 ------------PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS- 612
G T ++ DL + + L+ + + G+ P +E FA S
Sbjct: 498 ETSATSAFSKWGAPGFVTAMDEQDLGVIRKHLQNDAKPIAAAGILPPSHIIERFASLFSP 557
Query: 613 NYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP 672
+ +L + E RL S+ +C ++++L++ LS+ DR APV++R+
Sbjct: 558 DIPLAFVLSRLREMARLSSSFNMCSFGEHLDISDVLKEFD-LSIYDRSVLLTAPVSLRE- 615
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPK--------GSAKNDAE-----LLDLETKHQVLS 719
K +LR + N + +P+ +++ D + LL LE H+ ++
Sbjct: 616 KGQKDILRAFAWSIANLSGGHLLEIPEVDLEALDVDASQLDPQGQKNYLLRLEGLHKAVT 675
Query: 720 MYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQ 774
+YLWLS++++ VF K A + + + E + L A+++ + +Q + L +Q
Sbjct: 676 LYLWLSYRYR-GVFVSQKLAFHVKSLVEEKITNCLEAADYEADKQQRRREMLRRQ 729
>gi|85107578|ref|XP_962405.1| hypothetical protein NCU06371 [Neurospora crassa OR74A]
gi|28924010|gb|EAA33169.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 791
Score = 332 bits (850), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 193/535 (36%), Positives = 301/535 (56%), Gaps = 40/535 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P+ WFP R ++R I H GPTNSGKTYNAL+ AK GIY PLRLLA E++
Sbjct: 193 ADLRFPYEWFPATRQLQRTIHLHVGPTNSGKTYNALKALENAKSGIYAGPLRLLAHEIYT 252
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G C+L+TG+E+++ ++ +CTVEM + DVAVIDEIQM++D RG+A
Sbjct: 253 RFTAKGKSCALITGEEQRIPEDADMFFRSCTVEMTPLNWKVDVAVIDEIQMIADEHRGWA 312
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+A+LG A E+HLCG+ V+D+++++C+ GD+ Y+R PL+ + + D +N
Sbjct: 313 WTQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRYQRLNPLLPMEQAVGTDFKN 372
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GD V++FSR + +K IE+ T C ++YG+LPPETR QA LFND +NE+D LV
Sbjct: 373 LQKGDAVISFSRVNLHSLKAGIEEATGRKCAIVYGSLPPETRAAQAALFNDPNNEYDFLV 432
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY--------- 565
ASDA+GMGLNL I+RVVF S K++G P+ +VKQI GRAGR +
Sbjct: 433 ASDAIGMGLNLEIKRVVFESAFKFDGMAHRPLTIPEVKQIGGRAGRYRTATDAVRSGKEE 492
Query: 566 ------------PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS- 612
G T ++ DL + + L+ + + G+ P +E FA S
Sbjct: 493 ETSATSAFSKWGAPGFVTAMDDQDLGVIRKHLQNDAKPIAAAGILPPSHIIERFASLFSP 552
Query: 613 NYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP 672
+ +L + E RL S+ +C ++++L++ LS+ DR APV++R+
Sbjct: 553 DIPLAFVLSRLREMARLSSSFNMCSFGEHLDISDVLKEFD-LSIYDRSVLLTAPVSLRE- 610
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPK--------GSAKNDAE-----LLDLETKHQVLS 719
K +LR + N + +P+ +++ D + LL LE H+ ++
Sbjct: 611 KGQKDILRAFAWSIANLSGGHLLEIPEVDLEALDVDASQLDPQGQKNYLLRLEGLHKAVT 670
Query: 720 MYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQ 774
+YLWLS++++ VF K A + + + E + L A+++ + +Q + L +Q
Sbjct: 671 LYLWLSYRYR-GVFVSQKLAFHVKSLVEEKITNCLEAADYEADKQQRRREMLRRQ 724
>gi|294658399|ref|XP_460737.2| DEHA2F08624p [Debaryomyces hansenii CBS767]
gi|202953098|emb|CAG89077.2| DEHA2F08624p [Debaryomyces hansenii CBS767]
Length = 743
Score = 332 bits (850), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 199/551 (36%), Positives = 307/551 (55%), Gaps = 46/551 (8%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DL+ P WFP AR MKRK I H GPTNSGKTYN+L++ +AK G Y PLRLLA E+++
Sbjct: 209 VDLSNPAEWFPEARKMKRKFIMHVGPTNSGKTYNSLRKLAKAKSGYYAGPLRLLAREIYE 268
Query: 337 KVNALGVYCSLLTGQEKKLVP-------FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
+ + G+ C+L+TG+E ++P S + T+EM+ + + D+ +IDEIQM++D
Sbjct: 269 RFHDQGIKCNLITGEE--VIPSIDSFGKISEISSGTIEMIPSHKKMDICIIDEIQMIADP 326
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWT A+LG+ A EIH+CG+ S + ++ K+ TGDE+ Y R L V K +
Sbjct: 327 RRGEAWTNAVLGVQAKEIHMCGEESAVPLILKLAKITGDEVEINKYNRLGKLTVSDKE-V 385
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
+ +N++ GDCV+AFS+R+I E+K IE+ TN VIYGALPPE R ++AN FN +
Sbjct: 386 SNFKNLQKGDCVIAFSKRKILELKCEIERSTNLKVGVIYGALPPEIRSKEANGFN--SGQ 443
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR--RGSIYPD 567
+DVLVASDAVGMGLNL I+R+VF++ K+NG++ IP+ S+ KQIAGRAGR + +
Sbjct: 444 YDVLVASDAVGMGLNLKIKRIVFFATKKFNGNETIPLTASETKQIAGRAGRFSKDEGESE 503
Query: 568 GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKF-GE 625
G T + DL +L + + +P + + K +P + + + YT F +L +F E
Sbjct: 504 GFVTAMYKKDLIFLKKMMNEPIQNLSKACTWPTDKVWTYYMSKFPKYTSFYDILAQFEKE 563
Query: 626 NCRLD-GSYFLCRHDHIKKVANMLEK---VQGLSLEDRFNFCFAPVNIR--DPKAMYHLL 679
L+ ++FL D ++ N+ + + ++ED+ APVNI P +
Sbjct: 564 TSSLEMENFFLTALDSRYEILNLFLRNDLYKKTTIEDQLRLSLAPVNINMSSPLVVDTAF 623
Query: 680 RFASSYSKNAP----------VSIAMGMPKGSAKNDA---ELLDLETKHQVLSMYLWLSH 726
+F + +K I PK +A ++ L LE H+++ ++LWLS
Sbjct: 624 KFFQNITKCETKNIFDFNFLHTEILKRRPKFTATTESTVQTLQSLEENHKLVLIFLWLSQ 683
Query: 727 QFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGYDRPRSII 786
++ +F + A T I + + + L N + + R G + RS
Sbjct: 684 RW-PTLFVDKESATETKTLIEKRISEELLNL----------RRLIKHSRSAGVEPRRSNP 732
Query: 787 KSYENRKRQEK 797
K ++ R Q+K
Sbjct: 733 KGFKFRANQQK 743
>gi|393220740|gb|EJD06226.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 643
Score = 332 bits (850), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 188/465 (40%), Positives = 264/465 (56%), Gaps = 41/465 (8%)
Query: 264 PDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
P ++ + D T P W+P AR+++RKI H GPTNSGKT+NAL+ +++G+Y
Sbjct: 16 PPVFSTLESLQNAVDHTHPEEWYPTARMLRRKIHMHVGPTNSGKTHNALRALAASRRGVY 75
Query: 324 CSPLRLLAMEVFDKVN-----ALGV-----------YCSLLTGQEKKLVPF-SNHIACTV 366
SPLRLLA E+FD++N LG C+L+TG+E +++ +N ++CTV
Sbjct: 76 ASPLRLLAYEIFDRLNNGRIVPLGADPSAPPETFKRLCNLVTGEEVRMISEDANLLSCTV 135
Query: 367 EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426
EM+ T + Y+VAV+DEIQM+SD RG AWT A+LGL A+EIHLCG+ + +V+++ +
Sbjct: 136 EMIDTSKRYEVAVVDEIQMLSDPERGGAWTAAVLGLHAEEIHLCGEAGAVPLVQEMLKDV 195
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
GDEL YER PL V +K+L GDL ++ GDCVV+FSR +F +K IE+ T C +
Sbjct: 196 GDELIVHRYERLTPLTVASKSLKGDLTKIQKGDCVVSFSRSMLFSLKEQIEEATGMRCAI 255
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
IYG LPPE R +QA FND D+ +DVLV SDA+GMGLNL I+R+VF S K++G +
Sbjct: 256 IYGRLPPEVRSEQAERFNDPDSGYDVLVGSDAIGMGLNLKIKRIVFESSQKWDGTNQRAL 315
Query: 547 PGSQVKQIAGRAGRRG----SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP--- 599
SQ+KQIAGRAGR G P G+ TT++ DL + + ++ V K + P
Sbjct: 316 SLSQLKQIAGRAGRFGMHGTDTDPGGVVTTIHERDLPTVRKAVESRSVPVSKRAILPTTQ 375
Query: 600 --FFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV----- 651
F +L Q T F + + RL Y L + + M E V
Sbjct: 376 NMFHSLEQLVRPQKQKQTKFSAVFDILRSTARLAPCYAL------RDLGKMAEDVVPVID 429
Query: 652 ---QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI 693
+ +LE+R APV RD RF +SY K V +
Sbjct: 430 TYCKDFTLEERLRVFLAPVIWRDGAVKMAAKRFINSYRKEMHVKL 474
>gi|71021827|ref|XP_761144.1| hypothetical protein UM04997.1 [Ustilago maydis 521]
gi|46100582|gb|EAK85815.1| hypothetical protein UM04997.1 [Ustilago maydis 521]
Length = 891
Score = 331 bits (849), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 191/468 (40%), Positives = 267/468 (57%), Gaps = 35/468 (7%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL P +P AR + R I H GPTNSGKT+ AL +A+ GI+ PLRLLA EV+D+
Sbjct: 304 DLRFPTHQYPRARTLIRNIHLHVGPTNSGKTHGALVALSKARTGIFAGPLRLLAHEVWDR 363
Query: 338 VNALGV-------YCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
N+ V C+L+TG+EK+ V P + I+CTVEMV+T DV VIDEIQM+ DA
Sbjct: 364 FNSGTVSPNVAARACNLVTGEEKRTVDPLAGLISCTVEMVATTRAVDVGVIDEIQMIGDA 423
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RGYAWT A+LGL A E+HLCG+ SV+ ++ I GD L Y+R PL V +++
Sbjct: 424 QRGYAWTNAVLGLAAKELHLCGEASVIPLIENIAKACGDHLTIHRYDRLTPLSVADESIH 483
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
DL ++ GDCVVAFSR IF +K IEK T C V YGALPPET+ +QA LFN + +
Sbjct: 484 NDLGQIQKGDCVVAFSRSGIFALKSDIEKRTGLRCAVAYGALPPETKAEQAKLFN--EGK 541
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-- 567
DV+VASDA+GMGLNL I+RVVF +L+K+NG + + + SQ+KQIAGRAGR G+ +
Sbjct: 542 LDVMVASDAIGMGLNLRIKRVVFDTLTKWNGKEEVTLSASQIKQIAGRAGRYGTQDKETN 601
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY-------T 615
GL TT + +L+ L L P + + + P E + + L + T
Sbjct: 602 KAELGGLVTTRHEHELEILRAALASPLLPITRAAIEPSSETLGQLSAMLPSVNGKSGPRT 661
Query: 616 FCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQG--LSLEDRFNFCFAPVNIRDP 672
QL R+D + +FL ++ ++E L++ +R F AP N RD
Sbjct: 662 LSQLYADVALLSRIDSTNFFLSDFSQKLTISPLIESASNGMLTVAERETFSNAPANTRDE 721
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSM 720
+ + L + +S+ V +A D +L++E QV+S+
Sbjct: 722 RVVAFLCKAVRQFSRGGLVDF------DTAVKDLGMLEVE--EQVVSL 761
>gi|402079298|gb|EJT74563.1| ATP-dependent RNA helicase SUV3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 783
Score = 331 bits (849), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 195/534 (36%), Positives = 286/534 (53%), Gaps = 40/534 (7%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
E D PH WFP R M R I H GPTNSGKTYNAL+ A+ G+Y PLRLLA EV
Sbjct: 205 ELTDFRFPHEWFPATRAMHRTIHLHVGPTNSGKTYNALKALETARTGVYAGPLRLLAHEV 264
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
+ ++ C+LLTG+E+++ + ACTVEM +++ DVAVIDEIQM+++ RG
Sbjct: 265 YTRLTKKDKICALLTGEEQRIPDGFQFMFAACTVEMTPLNDVLDVAVIDEIQMITNEDRG 324
Query: 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL 452
+AW +A LG+ A E+HLCG+ +D+++ +C GD Y R PL ++L GDL
Sbjct: 325 FAWAQAFLGVQAREVHLCGEERTVDLIQNLCQRIGDTCIIHKYNRLSPLQTMRRSL-GDL 383
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
RN+ GD VV+FSR + +K IEK T C V+YG+LPPETR +QA+LFND DN++D
Sbjct: 384 RNLEKGDAVVSFSRVGLHRLKAGIEKQTGRRCAVVYGSLPPETRAEQASLFNDPDNDYDY 443
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIY------ 565
LVASDA+GMGLNL I+RV+F +++K++G + +KQI GRAGR R + +
Sbjct: 444 LVASDAIGMGLNLEIKRVIFEAITKFDGTMHRDLGIPDIKQIGGRAGRFRSAAHEIKGGS 503
Query: 566 --------------PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
P GL TTL+ L + +K G+ P +E
Sbjct: 504 ATPLLDAPADRSEKPPGLVTTLDPKHLARVQHAFTVEVPQIKVAGILPPASSIEAIYSLF 563
Query: 612 SNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
T +L K + ++ +FLC +VA+ +E + + + DR AP + R
Sbjct: 564 PPGTPLSHVLVKIRQLAKVSSEFFLCDIKEWIEVADAIEGLP-MGIHDRCTLLNAPTS-R 621
Query: 671 DPKAMYHLLRFASSYSKNAPVSIAMGM----------PKGSAKNDAELLDLETKHQVLSM 720
D M L FA S+ + PK A L LE H+ +++
Sbjct: 622 D--TMESLKVFAKCISQQKGGHLLEIEELDLEVLERDPKEVTNPRAFLDRLEVAHKSVTL 679
Query: 721 YLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQ 774
YLWLS+++ + +FP A + + + + L +++PE+R A +L++Q
Sbjct: 680 YLWLSYRY-QGIFPSQTLAFEVKKRLEARIDEQLDRFDYRPEARAAATRRLYEQ 732
>gi|327299422|ref|XP_003234404.1| mitochondrial ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
gi|326463298|gb|EGD88751.1| mitochondrial ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
Length = 771
Score = 331 bits (849), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 184/477 (38%), Positives = 270/477 (56%), Gaps = 27/477 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P AR M+RKI H GPTNSGKTY+ALQR +AK G Y PLRLLA E++
Sbjct: 188 ADFRYPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYS 247
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC---TVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++N G+ C+L+TG E + VP + + TVEMV + +V VIDEIQM++D RG+
Sbjct: 248 RLNKKGISCALITGDEVR-VPENGPVKVYSNTVEMVPIGQEVEVGVIDEIQMIADPHRGW 306
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + +++++ S GD L +Y+R PL A +L GD+R
Sbjct: 307 AWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMGDTLEIHNYKRLNPLKTMASSLKGDIR 366
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 367 RLEKGDCIVAFSRVGIHSLKQEIEKVTGRRAAIVYGSLPAEIRAQQADLFNDPNNDYDFL 426
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
VASDA+GMGLNL+ +R++F S+ K I + S++KQI GRAGR S
Sbjct: 427 VASDAIGMGLNLSCKRIIFESVIKRLPTGIQRLSISEIKQIGGRAGRYRSAAQSSSSRIA 486
Query: 568 ------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLL 620
GL T L+ DL Y+ + E + G+ P ++ ++ T F +
Sbjct: 487 NEKENVGLVTCLDEADLPYIRAAMMAEAEPLDAAGILPLDSVIDNYSNMFPPDTPFGYIY 546
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
++ R D +F+C+ + +L+ +QGL++ D+ F AP+ DP +
Sbjct: 547 QRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAPLRATDPVMARVIKA 606
Query: 681 FASSYSKNAPVSIAMGMP--------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
FA + + + +P + + +D E L LE H+ L +YLWL ++F
Sbjct: 607 FAECVGQQKSGRL-LDIPELDLEILDRPVSGDDKEYLRSLEALHRSLILYLWLGYRF 662
>gi|425773436|gb|EKV11789.1| Mitochondrial ATP-dependent RNA helicase Suv3, putative
[Penicillium digitatum PHI26]
Length = 779
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/489 (40%), Positives = 280/489 (57%), Gaps = 33/489 (6%)
Query: 269 RFRAMI-----ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
RF A I E ADL P W+P AR M+R I H GPTNSGKTY+ALQR ++K G Y
Sbjct: 159 RFSAPILAAQQEVADLRWPAEWYPRARSMQRTIHLHVGPTNSGKTYHALQRLAKSKNGFY 218
Query: 324 CSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI----ACTVEMVSTDEMYDVAV 379
PLRLLA EV+ + A GV CSL+TG + K P + + + TVEMVS + YDV V
Sbjct: 219 AGPLRLLAQEVYHRFKADGVPCSLVTGDDVKF-PDDDQVPRITSNTVEMVSLGQEYDVGV 277
Query: 380 IDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFK 439
IDEIQM++++ RG+AWTRA LG E+HLCG+ + ++R++C+ TGD L YER
Sbjct: 278 IDEIQMIANSSRGWAWTRAFLGAQVAELHLCGETRAVPLIRELCALTGDNLEVHRYERLN 337
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499
L V +L G+L ++ GDC+V FSR+ I +K IEK T ++YG LP E R QQ
Sbjct: 338 ALEVMPHSLKGNLNSLEKGDCIVVFSRKGIHAMKADIEKTTGRRAAIVYGGLPAEIRTQQ 397
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGR 557
ANLFND DN++D LVASDA+GMGLNL+ +RV+F +L K G + + VP ++KQI GR
Sbjct: 398 ANLFNDPDNDYDFLVASDAIGMGLNLSCKRVIFDTLVKRVPTGLQRLTVP--EIKQIGGR 455
Query: 558 AGR--------RGSIYPD-GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFA 608
AGR + P+ GL + L DL Y+ + +K + G+FP FA
Sbjct: 456 AGRYRPANATESTNEEPNVGLISCLEEVDLPYIQQAMKLEPPPLSAAGIFPPESVFRKFA 515
Query: 609 GQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV 667
F L+++ E +++ +FLC + A +++ V+GL ED+ F +P+
Sbjct: 516 AYFPPGVPFEYLIKRVLEIAKVNPLFFLCDPSSQLENAEIIDTVKGLPFEDQLKFMVSPM 575
Query: 668 NIRDPKAMYHLLRFASSYSKN--------APVSIAMGMPKGSAKNDAELLDLETKHQVLS 719
+ + + A +++ A +++ + S ND L DLE+ H+ +
Sbjct: 576 DRKSSGSRDVTGAMADCVAEHLEGRLLDIAYLNLEVIEQPVSGSNDY-LHDLESLHRAVI 634
Query: 720 MYLWLSHQF 728
+YLWLS +F
Sbjct: 635 LYLWLSFRF 643
>gi|425772670|gb|EKV11066.1| Mitochondrial ATP-dependent RNA helicase Suv3, putative
[Penicillium digitatum Pd1]
Length = 779
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/489 (40%), Positives = 280/489 (57%), Gaps = 33/489 (6%)
Query: 269 RFRAMI-----ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
RF A I E ADL P W+P AR M+R I H GPTNSGKTY+ALQR ++K G Y
Sbjct: 159 RFSAPILAAQQEVADLRWPAEWYPRARSMQRTIHLHVGPTNSGKTYHALQRLAKSKNGFY 218
Query: 324 CSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI----ACTVEMVSTDEMYDVAV 379
PLRLLA EV+ + A GV CSL+TG + K P + + + TVEMVS + YDV V
Sbjct: 219 AGPLRLLAQEVYHRFKADGVPCSLVTGDDVKF-PDDDQVPRITSNTVEMVSLGQEYDVGV 277
Query: 380 IDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFK 439
IDEIQM++++ RG+AWTRA LG E+HLCG+ + ++R++C+ TGD L YER
Sbjct: 278 IDEIQMIANSSRGWAWTRAFLGAQVAELHLCGETRAVPLIRELCALTGDNLEVHRYERLN 337
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499
L V +L G+L ++ GDC+V FSR+ I +K IEK T ++YG LP E R QQ
Sbjct: 338 ALEVMPHSLKGNLNSLEKGDCIVVFSRKGIHAMKADIEKTTGRRAAIVYGGLPAEIRTQQ 397
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGR 557
ANLFND DN++D LVASDA+GMGLNL+ +RV+F +L K G + + VP ++KQI GR
Sbjct: 398 ANLFNDPDNDYDFLVASDAIGMGLNLSCKRVIFDTLVKRVPTGLQRLTVP--EIKQIGGR 455
Query: 558 AGR--------RGSIYPD-GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFA 608
AGR + P+ GL + L DL Y+ + +K + G+FP FA
Sbjct: 456 AGRYRPANATESTNEEPNVGLISCLEEVDLPYIQQAMKLEPPPLSAAGIFPPESVFRKFA 515
Query: 609 GQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV 667
F L+++ E +++ +FLC + A +++ V+GL ED+ F +P+
Sbjct: 516 AYFPPGVPFEYLIKRVLEIAKVNPLFFLCDPSSQLENAEIIDTVKGLPFEDQLKFMVSPM 575
Query: 668 NIRDPKAMYHLLRFASSYSKN--------APVSIAMGMPKGSAKNDAELLDLETKHQVLS 719
+ + + A +++ A +++ + S ND L DLE+ H+ +
Sbjct: 576 DRKSSGSRDVTGAMADCVAEHLEGRLLDIAYLNLEVIEQPVSGSNDY-LHDLESLHRAVI 634
Query: 720 MYLWLSHQF 728
+YLWLS +F
Sbjct: 635 LYLWLSFRF 643
>gi|156049155|ref|XP_001590544.1| hypothetical protein SS1G_08284 [Sclerotinia sclerotiorum 1980]
gi|154692683|gb|EDN92421.1| hypothetical protein SS1G_08284 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 805
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 198/552 (35%), Positives = 298/552 (53%), Gaps = 72/552 (13%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P WFP R M+R H GPTNSGKTY+ALQ+ A GIY PLRLLA EV+
Sbjct: 195 ADFRYPIEWFPATRAMQRTFHLHVGPTNSGKTYHALQKLEAANSGIYAGPLRLLAHEVYT 254
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
++NA G CSL+TG+E+++ + +CTVEMV + D+AVIDEIQM+ D RG+A
Sbjct: 255 RLNAKGKPCSLITGEERRIPDCGKDLMKSCTVEMVPLNTKVDIAVIDEIQMIGDEERGWA 314
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL----- 449
WT+A+LG+ A E+HLCG+ D+++K+C+ GD+L +Y+R L V L
Sbjct: 315 WTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMGDKLVIHNYDRLGKLQVMNNCLSTKNNE 374
Query: 450 ---------GDLRNVRSGDCVVAFSRREIFEVKMAIE-KHTNHHCCVIYGALPPETRRQQ 499
G + + GD ++ FSR +I +K IE +H C ++YG+LPPETR Q
Sbjct: 375 RDGPSEKGGGPVSKLEKGDAIILFSRMKIHAMKNKIEAQHKGKRCAIVYGSLPPETRALQ 434
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A LFND DN++D LVAS+A+GMGLNL+I+RV+ S+ +++G +I +P S++KQIAGRAG
Sbjct: 435 AALFNDPDNDYDFLVASNAIGMGLNLSIKRVILESIKRFDGTDLITLPLSEIKQIAGRAG 494
Query: 560 R----RGSIY-----------------PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
R R +I P GL TT +D L + + + G+F
Sbjct: 495 RYKTARDAIEAGPIDVTDGIPAKPTEPPVGLVTTFYKEDHKILSNAMSKEAAQMTSAGIF 554
Query: 599 PFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
P + +E FA + T F ++ + E + + LC+ +A++++ LS+
Sbjct: 555 PPADVIERFAERFPKSTPFSYIILRLHEIGSISSQFHLCKLKEHVDIADIIQDFS-LSIR 613
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD------- 710
+R F APV++RD + L FA + N G ++ D E+LD
Sbjct: 614 NRLVFLAAPVSVRDSGGVEVLRAFARCVANNTG-----GHVLDISELDIEVLDEDPDTFT 668
Query: 711 -----------LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQS----LT 755
+E H+ +++YLWLS++F VF ++A+A I L+ + L
Sbjct: 669 SQQQREIYVRKVEGLHKKITLYLWLSYRFT-GVF----HSQALAFHIKRLVEEKIDICLA 723
Query: 756 NANWKPESRQAG 767
A W+ ++R +
Sbjct: 724 KAEWQEKARMSA 735
>gi|45200857|ref|NP_986427.1| AGL240Wp [Ashbya gossypii ATCC 10895]
gi|44985555|gb|AAS54251.1| AGL240Wp [Ashbya gossypii ATCC 10895]
gi|374109672|gb|AEY98577.1| FAGL240Wp [Ashbya gossypii FDAG1]
Length = 708
Score = 330 bits (845), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 192/500 (38%), Positives = 286/500 (57%), Gaps = 40/500 (8%)
Query: 261 EEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK 320
E P + + D++ P WFP AR ++R I+ H GPTNSGKTY+AL++ + +
Sbjct: 185 EVLPKRVGSLSFSKRTLDISNPAEWFPEARKLRRTIVVHLGPTNSGKTYHALEKLKKCDR 244
Query: 321 GIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMY 375
G Y PLRLLA E++D+ + C+LLTG+E L N + TVEMV ++ +
Sbjct: 245 GYYAGPLRLLAREIYDRFQKDNIRCNLLTGEEVINDLDTLGNRAGLTSGTVEMVPLNQYF 304
Query: 376 DVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHY 435
D+ V+DEIQM++D RG+AWT ALLG+ A E+HLCG+PSVL ++++ + TGD+L Y
Sbjct: 305 DMVVLDEIQMLADEQRGWAWTNALLGVQASELHLCGEPSVLPFIQRLVAMTGDKLVINEY 364
Query: 436 ERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
+R L VE+K L ++ GDC+V+FS+R+ ++K+ IE+ VIYG+LPPET
Sbjct: 365 QRLGKLEVESKPLPERFHGLKKGDCLVSFSKRKTLDLKLQIERAKKCKVAVIYGSLPPET 424
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R QA +FN E D+LVASDA+GMGLNL+I+RV+F S K+NG ++IP+ SQ KQIA
Sbjct: 425 RVHQATMFN--RGEADILVASDAIGMGLNLSIKRVIFTSAMKWNGAELIPLTDSQTKQIA 482
Query: 556 GRAGRR-----------GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQV 604
GRAGR GS+ G T L+++ L+ + +K P + + L+P
Sbjct: 483 GRAGRYKVAGESDDAAGGSV---GKVTALDMETLEMIQNSMKAPVKYIPSAVLWP---PD 536
Query: 605 ELFAGQLSNY----TFCQLLEKFGENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLED 658
+ A L+ Y LLE F + + D + L + +V N++E + GLSLED
Sbjct: 537 RILAQILTKYPPGMKITTLLEHFDRDIKSNPDSLFILPNIESRIEVMNLIEGMDGLSLED 596
Query: 659 RFNFCFAPV-NIRDPKAMYHLLRFASSYSKNAPVS-----IAMGMPKGSAKNDAEL-LDL 711
AP+ ++ PK + + F + +K S I + A D +L LDL
Sbjct: 597 MMTLSNAPLRDLPIPKKAF--INFCETVAKKETRSIFDFKIPLNFLNAKAVTDEDLKLDL 654
Query: 712 -ETKHQVLSMYLWLSHQFKE 730
E H VL++Y+WL ++ +
Sbjct: 655 YEELHHVLTLYMWLQIRYPD 674
>gi|408393411|gb|EKJ72675.1| hypothetical protein FPSE_07075 [Fusarium pseudograminearum CS3096]
Length = 752
Score = 330 bits (845), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 269/482 (55%), Gaps = 35/482 (7%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D P+ WFP R M+RKI H GPTNSGKTY AL+ +K+G+Y PLRLLA EV+ +
Sbjct: 187 DFRFPYEWFPATRAMQRKIHVHVGPTNSGKTYRALKALEASKRGVYAGPLRLLANEVYQR 246
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHI---ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G+ C+LLTG+E + VP +CTVEMV +E +DVAVIDEIQM++D RG
Sbjct: 247 LTAKGLPCALLTGEEVR-VPSDTDTYFTSCTVEMVPVNEQFDVAVIDEIQMIADEDRGQG 305
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
W ALLG+ A E+HLCG+ + ++ IC+ GDE YER PL L+GD
Sbjct: 306 WATALLGVQAKEVHLCGEERTVKLIESICASIGDECIVHRYERLSPLEPMENALMGDYGK 365
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+ GD VVAFSR + +K+ IEK T C +IYG+LPPE R QQA LFND DN++D +V
Sbjct: 366 LEKGDAVVAFSRLNLHALKLTIEKKTGRRCAIIYGSLPPEVRVQQAALFNDPDNDYDFIV 425
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRAGRRGS--------- 563
ASDA+GMGLNL IRRV+ + +KY+G ++++ P ++KQI GRAGR +
Sbjct: 426 ASDAIGMGLNLEIRRVILETCAKYDGSHNRLLSYP--ELKQIGGRAGRYKTARNATEGTE 483
Query: 564 -----IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FC 617
I G TT++ DL + E + ++ + P VE F+ + T
Sbjct: 484 SEVTEIRKVGYVTTMDRQDLKIVREAFEANVPDIEYAYVTPPASVVERFSTYFPSQTPLS 543
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
+L + E + + L ++A+M++ + L++ DR F P+ R A+
Sbjct: 544 FILMRIKELASVSKLFRLHISTEKLEIADMIQDIP-LTIYDRLTFTNLPIAARAENAVPV 602
Query: 678 LLRFASSYSKNA----------PV-SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSH 726
L AS +KN P+ ++ + M K L LE+ HQ ++ Y+WLS+
Sbjct: 603 LRALASVVAKNGSGDLLSIKEIPLENLDLNMKTFERKPTEYLHKLESLHQAINQYIWLSY 662
Query: 727 QF 728
+F
Sbjct: 663 RF 664
>gi|212533311|ref|XP_002146812.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces marneffei ATCC 18224]
gi|210072176|gb|EEA26265.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces marneffei ATCC 18224]
Length = 746
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 188/473 (39%), Positives = 268/473 (56%), Gaps = 24/473 (5%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL P W+PFAR +R I H GPTNSGKTY AL+R EAK G Y PLRLLA EV+ +
Sbjct: 168 DLRYPAEWYPFARSRQRTIHLHVGPTNSGKTYRALKRLEEAKLGFYAGPLRLLAQEVYSR 227
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHI-ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
N G+ CSL+TG E + I + TVEMVS YDV VIDEIQM++D RG+AWT
Sbjct: 228 FNTQGISCSLVTGDEVRTPDTPPRIISNTVEMVSIYRDYDVGVIDEIQMIADPDRGWAWT 287
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
RA LG A E+HLCG+ + +++++ + GD L HY+R PL E K+L GDLR +R
Sbjct: 288 RAFLGSRAKELHLCGEERAVPLIKELATLMGDNLEIHHYQRLNPLRAETKSLNGDLRKLR 347
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GD +V FSR I +K AIEK T ++YG LP E R QQANLFND DN++D LVAS
Sbjct: 348 KGDAIVTFSRINIHALKNAIEKTTGKRAAIVYGGLPAEIRTQQANLFNDPDNDYDYLVAS 407
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---------RGSIYPD 567
DA+GMGLNL +RV+F +L K + + ++KQI GRAGR RG +
Sbjct: 408 DAIGMGLNLKCKRVIFQTLVKGGKGGLSRISIPEIKQIGGRAGRYRAANETGKRGDSEEE 467
Query: 568 --GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL-SNYTFCQLLEKFG 624
GL T+L DL ++ + L+ +K G+ + A + + L+ +
Sbjct: 468 NVGLVTSLEDVDLPFIQQALEFDPPPLKAAGIISTDAMLYRVASYFPPDVSLKFLINRVC 527
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY---HLLRF 681
++ +F+C + + A+ L++ +S+ED+ F +P+++RD M +R
Sbjct: 528 SISKVHPLFFMCNARNQLEAASFLDRCDRISIEDQLVFIASPLSVRDQALMTCARGYIRC 587
Query: 682 ASSYSKNAPVSIA------MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
++ S + I + +P K+ L +LE+ H+ L +YLWLS++
Sbjct: 588 VANNSSGRLLDIPELNLEILEVPVSGQKD--YLNELESLHKALILYLWLSYRM 638
>gi|121713500|ref|XP_001274361.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus clavatus NRRL 1]
gi|119402514|gb|EAW12935.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus clavatus NRRL 1]
Length = 633
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 276/474 (58%), Gaps = 23/474 (4%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR +R I H GPTNSGKTY+AL+R +K G Y PLRLLA EV+
Sbjct: 66 ADLRYPAEWYPQARSSQRTIHLHVGPTNSGKTYHALKRLQASKSGFYAGPLRLLAQEVYH 125
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ A G+ CSL+TG + K+ N ++ TVEMV+ + ++V VIDEIQM++D RG+A
Sbjct: 126 RFQASGIPCSLVTGDDVKIPEGQNPTIVSNTVEMVNLGQQFEVGVIDEIQMLADPKRGWA 185
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA+LG A E+HLCG+ V+ ++R++ + TGD+L YER L V +++ GDLR
Sbjct: 186 WTRAVLGARASELHLCGETRVVPLIRELAALTGDKLEIHRYERLNSLKVMDQSIRGDLRK 245
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GDC+V FSR I +K IEK T ++YG+LP E R QQA+LFND DN++D LV
Sbjct: 246 LQKGDCIVVFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQASLFNDPDNDYDFLV 305
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR----------RGSI 564
ASDA+GMGLNL+I+R++F +L K ++ + ++KQIAGRAGR G
Sbjct: 306 ASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIAGRAGRYRSAAQQNKDTGDD 365
Query: 565 YPD-GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS-NYTFCQLLEK 622
P+ G T+L DL Y+ + L + G+FP + FA + F ++++
Sbjct: 366 EPNVGWVTSLEEVDLPYIQQALDIEPPPITAAGIFPPDPVFQKFAAYFPRDVPFEYIIKR 425
Query: 623 FGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFA 682
E R+ +F+C + A +++ V GL +ED+ F +P+ RD + FA
Sbjct: 426 LLEVSRVHPLFFMCDPRSQLENAEVIDSVTGLPIEDQITFMASPMYTRDNSSRNVASAFA 485
Query: 683 SSYSKNAPVSIAMGMP-------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
+++ + + +P + + E L +LE H+ + +Y WLS++F
Sbjct: 486 ECVAEHTGGRL-LDIPDLNLEVLENAVSGSKEYLHELEGLHRSVILYSWLSYRF 538
>gi|242777745|ref|XP_002479096.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722715|gb|EED22133.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces stipitatus ATCC 10500]
Length = 746
Score = 328 bits (842), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 270/479 (56%), Gaps = 33/479 (6%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ DL P W+PF R +R I H GPTNSGKTY AL+R +AK G Y PLRLLA EV+
Sbjct: 165 ATDLRYPAEWYPFTRSKQRTIHLHVGPTNSGKTYRALKRLEQAKLGFYAGPLRLLAQEVY 224
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSNHI-ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ + GV CSL+TG E ++ + I + TVEMVS + YDV VIDEIQM++D RG+A
Sbjct: 225 TRFSTQGVPCSLVTGDEVRISDATPRIISNTVEMVSIYKDYDVGVIDEIQMIADPDRGWA 284
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRA LG A E+H+CG+ + +++++ + GD L Y+R PL E K+L GDLR
Sbjct: 285 WTRAFLGARAKELHVCGEERAVPLIKELTTLMGDNLEIHRYQRLNPLQAEEKSLNGDLRK 344
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+R GDC+V FSR I +K IEK T ++YG LP E R QQANLFND N +D LV
Sbjct: 345 LRKGDCIVTFSRINIHALKNEIEKSTGKRAAIVYGGLPAEIRTQQANLFNDPHNNYDFLV 404
Query: 515 ASDAVGMGLNLNIRRVVFYSLSK--YNGDKIIPVPGSQVKQIAGRAGR-RGSIYPD---- 567
ASDA+GMGLNL +R++F +L K NG I +P ++KQI GRAGR R + D
Sbjct: 405 ASDAIGMGLNLKCKRIIFQTLVKGGKNGLSRISIP--EIKQIGGRAGRYRAANETDPRDS 462
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP----FFEQVELFAGQLSNYTFCQ 618
GL T+L DL ++ + L+ + G+ P F+ F +S F
Sbjct: 463 EEENVGLVTSLEDVDLPFIKQALEFDPPPLTAAGVIPTDAMFYRVASYFPPDVS---FKF 519
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
L+ + R+ +F+C+ + A +L++ +S+ED+ F +P+ RDP +
Sbjct: 520 LVNRVCSVSRVHPLFFMCKARSQLEAAEILDRCDRMSIEDQLVFMASPLGKRDPALLASA 579
Query: 679 LRFASSYSKNAPVSI---------AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
F ++N + + P +++ L +LE+ H+ L +YLWLS++
Sbjct: 580 KGFIQCVARNTSGRLLDIPELNLEILEAPVSGSRD--YLNELESLHKSLILYLWLSYRM 636
>gi|429857984|gb|ELA32820.1| ATP-dependent RNA helicase suv3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 786
Score = 328 bits (841), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 184/486 (37%), Positives = 276/486 (56%), Gaps = 35/486 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD+ P WFP R M+R I H GPTNSGKTY AL+ AK GIY PLRLLA E++
Sbjct: 168 ADMRFPMEWFPATRAMQRTIHLHVGPTNSGKTYRALKALENAKSGIYGGPLRLLAHEIYM 227
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ G C+++TG+E+++ ++ I+CTVEM + M DVAVIDEIQM+ D RG+A
Sbjct: 228 RFQNKGKPCAMVTGEEQRIPEDEDNYFISCTVEMTPLNRMVDVAVIDEIQMIGDMDRGWA 287
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+ALLG+MA E+HLCG+ V+D+++ IC+ GDE Y+R PL ++L DL
Sbjct: 288 WTQALLGVMAKEVHLCGEERVVDLIKSICASIGDECIVHRYQRLSPLETMKQSLDNDLSK 347
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GD VVAF+R + +K AIE+ T C ++YG+LPPETR QQA LFND DN++D LV
Sbjct: 348 LQKGDAVVAFTRVNLHGLKNAIEEQTGRRCAIVYGSLPPETRAQQAALFNDPDNDYDFLV 407
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR----RGSIYPD--- 567
ASDA+GMGLNL I+RV+F + +K++G + + S++KQI GRAGR R + D
Sbjct: 408 ASDAIGMGLNLEIKRVIFETATKHDGTQFRVLNTSEIKQIGGRAGRYKTARQATTSDAGA 467
Query: 568 -------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY 614
G TTL+ DDL + + + E ++ + P +E F+
Sbjct: 468 DTNAVAPVEEKKMGYVTTLDPDDLQTIRKAFQNEAEPLETAVIHPPAFVIERFSEYFPPD 527
Query: 615 T-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN----- 668
T +L + E + Y + ++ ++A+ +++ +++++R APVN
Sbjct: 528 TPLSFILLRLRELAPVSERYSVHVNERSIEIADTIQEF-PMTVQERITILNAPVNKDKGQ 586
Query: 669 ---IRDPKAMYHLLRFASSYS-KNAPVSIAMGMPKGSAKNDAE--LLDLETKHQVLSMYL 722
+R R + Y K P+ + + D L +ET HQ +++YL
Sbjct: 587 KEIVRAIAKRIATRRNGALYDIKEIPLELLDASIDDIGQQDGRKYLRAIETLHQAITLYL 646
Query: 723 WLSHQF 728
W+S++F
Sbjct: 647 WVSYRF 652
>gi|389634037|ref|XP_003714671.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae 70-15]
gi|351647004|gb|EHA54864.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae 70-15]
gi|440474806|gb|ELQ43528.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae Y34]
gi|440487290|gb|ELQ67087.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae P131]
Length = 757
Score = 328 bits (841), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 186/487 (38%), Positives = 269/487 (55%), Gaps = 36/487 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
D P WFP R M+RKI H GPTNSGKTYNAL+ A G+Y PLRLLA EV+
Sbjct: 182 GDFQHPTEWFPGTRSMQRKIHLHVGPTNSGKTYNALKALESATTGVYAGPLRLLAHEVYT 241
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
++ A G C+LLTG+E++ + +CTVEM + + DVAVIDEIQM++D RG+A
Sbjct: 242 RMVAKGRSCALLTGEEQRWPEDTQSFISSCTVEMAPLNTVVDVAVIDEIQMIADPDRGWA 301
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT+A+LG+ A E+HLCG+ +D+++++ GDE YER PL +L GDL+
Sbjct: 302 WTQAVLGIQAREVHLCGEERTVDLIKRLAESMGDECIVHQYERLSPLEPMNSSLGGDLKK 361
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GD VVAFSR + +K IEK T C ++YG+LPPETR +QA LFND DNE+D +V
Sbjct: 362 LQKGDAVVAFSRIGLHALKRGIEKQTGKRCAIVYGSLPPETRAEQAALFNDPDNEYDYIV 421
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG--------------- 559
ASDA+GMGLNL IRRVVF + +K++G + + S++KQI GRAG
Sbjct: 422 ASDAIGMGLNLEIRRVVFDTTNKFDGSERRFLGESEIKQIGGRAGRFRSAAQAIQSATEG 481
Query: 560 -----RRGSIYPD-GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
RR P G T ++ DL + + + +K GL P +E F+ +
Sbjct: 482 DEEIARRAVSRPSVGYVTCVDDGDLRRIQKAFEVEVPPIKAAGLLPPAAIIEKFSSYFAQ 541
Query: 614 YT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP 672
T +L K E R YF+C D + A++++ + + DR AP++ +
Sbjct: 542 DTPLSHILLKIREVVRTSDDYFVCNFDDWIEAADIIQAFP-MPISDRLVLLSAPLDYKTK 600
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPK----------GSAKNDAELLDLETKHQVLSMYL 722
+ M + S +S+ G+ + +L LET H+ L +YL
Sbjct: 601 EFMRICAKCVSELKDGHLLSLD-GLELEVLDVDDTCFNKYRAQEQLNKLETLHKCLILYL 659
Query: 723 WLSHQFK 729
WLS++++
Sbjct: 660 WLSYRYQ 666
>gi|308451181|ref|XP_003088574.1| hypothetical protein CRE_04454 [Caenorhabditis remanei]
gi|308246503|gb|EFO90455.1| hypothetical protein CRE_04454 [Caenorhabditis remanei]
Length = 691
Score = 328 bits (841), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 190/539 (35%), Positives = 293/539 (54%), Gaps = 61/539 (11%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQ----YLVWLGPSDDAVK---FLFPIFVEFCIEE 262
I F + FR Y PDD++ L+ L VK L+P F++ +
Sbjct: 100 INDKLFMRSFKSFREYC---TPDDLSSVDPALLILLSDISKGVKDCEMLYPFFLDHSKQV 156
Query: 263 FP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK 320
FP + + R + +DLT+PH W+P AR + RKI +H GPTNSGKTY+AL+RF EAK
Sbjct: 157 FPHLEAMDDLRII---SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKS 213
Query: 321 GIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYD 376
++C PL+LLA EVF + NALG+ C L+TG+E++ S H++ TVEM+ST
Sbjct: 214 AVFCGPLKLLASEVFTRTNALGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQ---- 269
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
M EIHLCG+P+ +D+V+K+ G+ + ++Y+
Sbjct: 270 --------------------------MRVEIHLCGEPAAIDIVKKLLEPIGETVEIRYYD 303
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL + K + N+ GDC+V FS++ +F +E++ VIYG LPP T+
Sbjct: 304 RKSPLTIADKAI-ESYSNIEPGDCIVCFSKKAVFFNSKKLEEN-GIKPAVIYGDLPPGTK 361
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QA FND D+E VLVA+DA+GMGLNLNIRRV+F S ++ +P QIAG
Sbjct: 362 LAQAAKFNDPDDECSVLVATDAIGMGLNLNIRRVIFNSCTRQTE----LLPTYAALQIAG 417
Query: 557 RAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTF 616
RAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++Q+E F+ L +F
Sbjct: 418 RAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPIANVGIAPTYDQIETFSFHLPQASF 477
Query: 617 CQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMY 676
+LL+ F C + +F+C ++++A ++++V L L+ R+ FC +P+N D +
Sbjct: 478 VRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVP-LPLKVRYTFCTSPLNTDDKRTAA 536
Query: 677 HLLRFASSYSKNAPVSIAMGM-----PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
++ A ++ ++ M P A +EL LE +++L Y+WLS +F +
Sbjct: 537 VFVKMARRFATGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEILDQYMWLSMRFPD 595
>gi|116196278|ref|XP_001223951.1| hypothetical protein CHGG_04737 [Chaetomium globosum CBS 148.51]
gi|88180650|gb|EAQ88118.1| hypothetical protein CHGG_04737 [Chaetomium globosum CBS 148.51]
Length = 742
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 189/506 (37%), Positives = 279/506 (55%), Gaps = 29/506 (5%)
Query: 248 VKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGK 307
+K F +F+ + F +K A E ADL P+ W+P R+M+R I H GPTNSGK
Sbjct: 134 LKHAFQLFL--TRDRFSQGVKDLHA--ELADLRFPYEWYPATRMMQRTIHLHVGPTNSGK 189
Query: 308 TYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI--ACT 365
TYNAL+ ++ GIY PLRLLA E + + A C+L+TG+E ++ S+ +CT
Sbjct: 190 TYNALRALESSRTGIYAGPLRLLAHETWSRFVAKDRPCALVTGEEMRIPEDSDTWFHSCT 249
Query: 366 VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
VEM + DVAVIDEIQM++D RG+AWT+A LG+ A E+HLCG+ V+ +++ +C+
Sbjct: 250 VEMTPLNAKVDVAVIDEIQMIADDERGWAWTQAFLGVQAKEVHLCGEERVVPLIQDLCAR 309
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCC 485
G++ Y+R PL + +L G N++ GD +VAF++ I ++K IEK T C
Sbjct: 310 IGEKCVVHRYQRLNPLKMMDTSLKGKFGNLQKGDAIVAFTKLGIHQLKAGIEKTTGRRCA 369
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
++YG LPPETR QA LFND +N++D LVASDA+GMGLNL I+RV+F S K++G + P
Sbjct: 370 IVYGNLPPETRASQAALFNDPNNDYDFLVASDAIGMGLNLEIKRVIFESSYKFDGVNLRP 429
Query: 546 VPGSQVKQIAGRAGR----------RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKV 595
+ + KQI GRAGR + GL T L+ +DL L + ++
Sbjct: 430 LTTPETKQIGGRAGRFRTAAQAASGDNTAPSPGLITALDDEDLPTLKKAFHAEAGPIRTA 489
Query: 596 GLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGL 654
G+FP +E F T +L + RL + +C + + ++ K L
Sbjct: 490 GVFPPPAIIERFYSYFPPRTPISFVLARLQHLSRLSPRFHMCNFNDAFAIGELI-KGYDL 548
Query: 655 SLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS----------KNAPVSIA-MGMPKGSAK 703
S+ DR F PVN+RDP+ + L FA + KN + I P
Sbjct: 549 SVADRCVFLNVPVNLRDPQQISALQSFAKCVADLGTGHLLDFKNIDLDILDEDRPIARQA 608
Query: 704 NDAELLDLETKHQVLSMYLWLSHQFK 729
L LE+ H+ ++MYLWLS++++
Sbjct: 609 QVVYLQRLESLHRTIAMYLWLSYRYQ 634
>gi|148700154|gb|EDL32101.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 551
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/429 (41%), Positives = 264/429 (61%), Gaps = 18/429 (4%)
Query: 342 GVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
GV C L+TG+E+ V + H++CTVEM + Y+VAVIDEIQM+ D RG+AWTR
Sbjct: 20 GVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPARGWAWTR 79
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
ALLGL A+E+HLCG+ + +++V ++ TG+E+ Q YER P+ V L L N++
Sbjct: 80 ALLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPISV-LDHALESLDNLQP 138
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GDC+V FS+ +I+ V IE VIYG+LPP T+ QA FND ++ +LVA+D
Sbjct: 139 GDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQARKFNDPNDPCKILVATD 197
Query: 518 AVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
A+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIAGRAGR S + +G TT
Sbjct: 198 AIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKEGQVTT 257
Query: 573 LNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS 632
++ DDL L + L +P + ++ GL P EQ+E+FA L T L++ F + ++DG
Sbjct: 258 MHRDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFAQVDGQ 317
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS 692
YF+C D K A +++ + LSL R+ FC AP+N + P LL+FA YS+N P++
Sbjct: 318 YFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLT 376
Query: 693 IA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIA 747
A + P KN +L+DLE H V +YLWLS++F ++FP + ++ ++
Sbjct: 377 FAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFI-DMFPDSSLVRSLQKELD 435
Query: 748 ELLGQSLTN 756
++ + + N
Sbjct: 436 AIIQEGVHN 444
>gi|154299770|ref|XP_001550303.1| hypothetical protein BC1G_11511 [Botryotinia fuckeliana B05.10]
Length = 720
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/451 (40%), Positives = 256/451 (56%), Gaps = 40/451 (8%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P R M+R H GPTNSGKTY+ALQ+ A GIY PLRLLA EV+
Sbjct: 113 ADFRYPIEWYPATRAMQRTFHLHVGPTNSGKTYHALQKLEAANSGIYAGPLRLLAHEVYT 172
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ NA G CSL+TG+E+++ + +CTVEMV + DVAVIDEIQM+ D RG+A
Sbjct: 173 RFNAKGKPCSLITGEERRIPEGAKDTMKSCTVEMVPLNSKVDVAVIDEIQMIGDEERGWA 232
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG---- 450
WT+A+LG+ A E+HLCG+ D+++K+C+ GD+L +YER L V AK+L
Sbjct: 233 WTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMGDKLIIHNYERLGKLQVMAKSLTSRHSE 292
Query: 451 ----------DLRNVRSGDCVVAFSRREIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQ 499
+ + GD V+ FSR I +K AIE H C ++YG+LPPETR QQ
Sbjct: 293 RDGPSGKESTPVSKLEKGDAVILFSRMRIHAMKNAIEAHHRGKRCAIVYGSLPPETRAQQ 352
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A LFND DN++D LVAS+AVGMGLNL+I+RV+ S+ ++NG + +P S++KQIAGRAG
Sbjct: 353 AALFNDPDNDYDFLVASNAVGMGLNLSIKRVILESVKRHNGTDFMTLPISEIKQIAGRAG 412
Query: 560 R----RGSIY-----------------PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
R R +I P GL TT D + L + + + G+F
Sbjct: 413 RYKTARDAIEAGPIDVADGIPTKPTEPPVGLVTTFFKTDHEILSSAMSKEAAQMTTAGIF 472
Query: 599 PFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE 657
P +E FA T F ++ + E L + LC+ +A+++++ L++
Sbjct: 473 PPANVIERFAEYFPKSTPFSYVILRLHELGSLSSEFHLCQLKEQAAIADIIQEFD-LTIR 531
Query: 658 DRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
+R F APV++RDP + + FA S N
Sbjct: 532 NRLIFLAAPVSLRDPGVVNVVKAFARCVSNN 562
>gi|317158967|ref|XP_001827445.2| ATP-dependent RNA helicase SUV3 [Aspergillus oryzae RIB40]
gi|391866410|gb|EIT75682.1| RNA helicase SUV3, DEAD-box superfamily [Aspergillus oryzae 3.042]
Length = 746
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 272/478 (56%), Gaps = 28/478 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD+ P W+P AR ++R I H GPTNSGKTY AL++ +K G Y PLRLLA EV+
Sbjct: 177 ADMRFPAEWYPQARSIQRTIHLHVGPTNSGKTYQALKKLEASKSGFYAGPLRLLAQEVYH 236
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
+ A G CSL+TG + K +P ++ TVEMV+ + YDV VIDEIQM+ D RG+
Sbjct: 237 RFQANGTTCSLVTGDDVK-IPEGQAPTIVSNTVEMVNLGQPYDVGVIDEIQMIGDPKRGW 295
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+P V+ ++R++ + TGD+L YER PL V ++L GDL+
Sbjct: 296 AWTRAVLGARAKELHLCGEPRVVPLIRELAALTGDKLEIHRYERLNPLKVMDRSLRGDLK 355
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
N++ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +NE+D L
Sbjct: 356 NLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIVYGSLPAEIRTQQASLFNDPNNEYDYL 415
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
VASDA+GMGLNL+ +R++F +L K ++ + ++KQIAGRAGR S
Sbjct: 416 VASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLSVPEIKQIAGRAGRYRSAAQQQKKGKA 475
Query: 568 --------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ- 618
G T+L DL Y+ + + + G+FP + FA +
Sbjct: 476 AEYDGTNVGYVTSLEEVDLPYIHQAMGIEPPPITAAGVFPPEPIFQRFAAYFPQSVPLEY 535
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
++++ + ++ +F+C A +++ V GL ED+ F AP++ RD +
Sbjct: 536 IIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTVSGLRFEDQMTFMAAPMHTRDISSRDVA 595
Query: 679 LRFASSYSKNAPVSIAMGMP--------KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
FA +++ + + +P + + N L DLE H+ + +Y WLS +F
Sbjct: 596 CAFAQCVAEHTGGRL-LDIPDLNLEILEEPVSGNKEYLHDLEILHKSVILYSWLSFRF 652
>gi|328864082|gb|EGG13181.1| hypothetical protein MELLADRAFT_32543 [Melampsora larici-populina
98AG31]
Length = 609
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 202/572 (35%), Positives = 302/572 (52%), Gaps = 66/572 (11%)
Query: 209 YIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIK 268
+I +F P A + RS I + D L ++D++ F +
Sbjct: 4 WIISNFIPWATNECRSTLIHQDSDR------GLVDTEDSINLALQAF-----------LS 46
Query: 269 RFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLR 328
A+I D+ +P +P AR KR+I H GPTNSGKT++AL+ A G+Y PLR
Sbjct: 47 SLSALI---DMRRPQDKYPDARRYKRQIHLHVGPTNSGKTHSALRALHGAHTGVYAGPLR 103
Query: 329 LLAMEVFDKVNALGVY-------CSLLTGQEKKLVPFS-NHIACTVEMVSTDEMYDVAVI 380
LLA EVF ++N + C+L+TG+E++ V + ++CTVEM+S + YDV VI
Sbjct: 104 LLAHEVFTRMNKGQIAHDLAPRACNLVTGEEQRTVEIAAGLVSCTVEMLSPHQYYDVVVI 163
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG AWT+A+LG A E+HLCG+ SV++++RK+ + GDE Y+R P
Sbjct: 164 DEIQMIGDIYRGDAWTQAVLGTQAKELHLCGEESVIELIRKLSIDCGDEFILHEYQRLTP 223
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L V ++L GDL ++ GDCVV FSR I+ +K IE+ T+ + YG LPPE R ++A
Sbjct: 224 LKVSEQSLKGDLSQIQKGDCVVTFSRNNIYAIKKLIEEQTDLRVGMAYGGLPPEVREREA 283
Query: 501 NLFN-----DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
+FN + + +DVLV SDA+GMGLNL I+RV+F +L K++G + + + SQ+KQI
Sbjct: 284 RMFNLGSEIEGEGGYDVLVGSDAIGMGLNLKIKRVIFEALYKFDGQREVTLSTSQIKQIG 343
Query: 556 GRAGRRGSIYPD-------------------GLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
GRAGR G I P G TL ++ L +C+ PFE + +
Sbjct: 344 GRAGRFG-ILPTKVKSESNQSSEGEPITQCVGEVATLQESEMPLLRKCMVAPFEPITQAV 402
Query: 597 LFPFFEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLS 655
+ FE V+ A + F LL + + ++ +A++LE + LS
Sbjct: 403 IKAPFETVQGLARMVPPGVRFSTLLNLRRTLTVTSPIFAIGDENNAAGIADLLEDITNLS 462
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLLRFASSYS----------KNAPVSIAMGMPKGSAKND 705
L +R FC AP + R+P AM L +A+++S K P++ K
Sbjct: 463 LAERDLFCSAPASSRNPVAMTALRSWATAHSKRKLGNLSEIKTEPINEKKSKSKEKLDQQ 522
Query: 706 AELLDLETKHQVLSMYLWLSHQFKEEVFPYAK 737
+ L LE+ H+ L +YLWL + E F + K
Sbjct: 523 S-LFRLESLHKCLVLYLWLGFRLP-ETFTFMK 552
>gi|115401322|ref|XP_001216249.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190190|gb|EAU31890.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 630
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 187/477 (39%), Positives = 271/477 (56%), Gaps = 28/477 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR M+R I H GPTNSGKTY AL+R ++ G Y PLRLLA EV+
Sbjct: 65 ADLRFPAEWYPQARAMQRTIHLHVGPTNSGKTYRALKRLEASESGFYAGPLRLLAQEVYG 124
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
+ + G+ CSL+TG E K +P + TVEMV+ YDV VIDEIQM++D+ RG+
Sbjct: 125 RFQSTGLSCSLVTGDEVK-IPDGQSPRITSNTVEMVNLSHPYDVGVIDEIQMIADSRRGW 183
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + ++R++ + TGD+L YER PL V ++L GDLR
Sbjct: 184 AWTRAVLGSRAKELHLCGEQRAVPLIRELAALTGDKLEIHRYERLNPLKVADQSLKGDLR 243
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
N++ GDCVVAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 244 NLQKGDCVVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQASLFNDPNNDYDYL 303
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGRAGRRGSIYPD---- 567
VASDA+GMGLNL+++R+VF ++ K G + + VP ++KQIAGRAGR S
Sbjct: 304 VASDAIGMGLNLSVKRIVFETIVKRVPGGLQRLSVP--EIKQIAGRAGRYRSAAQHASKK 361
Query: 568 --------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL-SNYTFCQ 618
G+ T+L DL ++ + + + G+ P + FA
Sbjct: 362 NADENSNVGIVTSLEEVDLPHIRQAMGVEPPPLAAAGIIPPDPVYQRFAAYFPPGVPLEY 421
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD---PKAM 675
++++ E + +F+C + A +++ V GL ED+ F AP+ RD A
Sbjct: 422 IIKRLAEVSQTHPLFFMCDTRPQLENAEVIDTVSGLQFEDQLTFMAAPIQTRDIASRDAA 481
Query: 676 YHLLRFASSYSKNAPVSIA----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LR + +S + I + + + N L +LE H+ + +Y WL ++F
Sbjct: 482 IAFLRCVAEHSGGRLLDIPDLNLEILEQPVSGNKEYLHELEILHKSVILYSWLGYRF 538
>gi|388578789|gb|EIM19125.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 591
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 197/545 (36%), Positives = 289/545 (53%), Gaps = 62/545 (11%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D +P + AR M+RK+I H GPTNSGKT++AL AK GIY PLRLLA E+F +
Sbjct: 35 DFRQPSLKYSKARTMRRKLILHVGPTNSGKTHSALLALSRAKTGIYAGPLRLLAHEIFLR 94
Query: 338 VN------ALGV-----------YCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAV 379
+N +G C+L TG+E ++V P S +CTVEMV + DV V
Sbjct: 95 LNQGTISPGIGTDGKPLPPGPPKTCNLYTGEEVRIVDPESGLKSCTVEMVPLEHEIDVGV 154
Query: 380 IDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFK 439
IDEIQ+++D RG AWT A+LG+ A E+H+CG+ +V++++ +I ETGDE+ Y+R
Sbjct: 155 IDEIQLIADDSRGPAWTAAVLGMRAKELHICGEETVVELLERIAKETGDEIIVNRYKRLT 214
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499
L + L L+NVR GDCVV FSR I+ +K IE T C V YG LPPETR +Q
Sbjct: 215 ELRIGKP--LSTLKNVRKGDCVVTFSRSGIWALKRKIEDATGLRCAVAYGGLPPETRAEQ 272
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A LFND+D+ +DV+VASDA+GMGLNL IRRVVF ++ K+NG K +P+ SQ+KQIAGRAG
Sbjct: 273 AKLFNDKDSGYDVMVASDAIGMGLNLKIRRVVFETVHKWNGVKEVPLSISQMKQIAGRAG 332
Query: 560 RRGSIYPD-----------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
R G + G+ TTLN DL L + + K + +
Sbjct: 333 RYGVNEKENIIETNNAKVEDEDDQSGVATTLNPMDLQILERAISAKIPTINKAAIGISTD 392
Query: 603 QVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANML-EKVQGLSLEDRF 660
++ + S + L++ R+ +YF+ + ++ ++A + E + L ++D +
Sbjct: 393 ALKDLNNLMPSRASLGDLIKTLTGLLRVSNNYFVTSNQNLLQMAAIANEPLSQLPIDDAY 452
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKN---APVSIAMGMPKGSAKNDAELL-------- 709
F AP N RD + L RF + + P+ G+ K+ +++
Sbjct: 453 RFAMAPCNTRDANVVAALCRFIDAQASGETIEPIKSLEGLGLKELKDVEKVIGNPAYKKP 512
Query: 710 -------DLETKHQVLSMYLWLSHQFKEEVFPYAKK--AEAMATDIAELLGQSLTNANWK 760
LE+ H+ L +Y WLS +F Y ++ A+ + + L N W
Sbjct: 513 LSPDTLNSLESLHRSLVLYTWLSFRF---TLDYTRRSVAQDLKVRTERCIEYILENVTWI 569
Query: 761 PESRQ 765
+ RQ
Sbjct: 570 SKQRQ 574
>gi|156846264|ref|XP_001646020.1| hypothetical protein Kpol_1031p69 [Vanderwaltozyma polyspora DSM
70294]
gi|156116691|gb|EDO18162.1| hypothetical protein Kpol_1031p69 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 192/484 (39%), Positives = 278/484 (57%), Gaps = 47/484 (9%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
++ P WFP AR MKR II H GPTNSGKTY ALQR +A++G Y PLRLLA E++D+
Sbjct: 211 EIPNPIEWFPEARKMKRTIIMHLGPTNSGKTYRALQRLKQAQRGYYAGPLRLLAREIYDR 270
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIAC-------TVEMVSTDEMYDVAVIDEIQMMSDAC 390
G C+LLTG+E ++ N I TVEMV + +DV V+DEIQM++D
Sbjct: 271 FRLEGHRCNLLTGEE--VITDLNSIGTPAGLTSGTVEMVPLNRQFDVLVLDEIQMLADPE 328
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT A+LG A EIHLCG+ SVL +++KI TGD L Y+R L +E+ L
Sbjct: 329 RGWAWTNAVLGARAHEIHLCGEKSVLPLIKKIVDITGDNLIVNEYDRLGKLEIESDVLSR 388
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
LR++R GDCVVAFS++ I ++K+ IEK T H VIYG+LPPETR QQANLFN E+
Sbjct: 389 GLRSLRRGDCVVAFSKKTILDLKLKIEKQTKHKVAVIYGSLPPETRLQQANLFN--SGEY 446
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-------RGS 563
DVLVASDA+GMGLNL+I R++F + +K+NG ++I + S VKQIAGRAGR +
Sbjct: 447 DVLVASDAIGMGLNLSIDRIIFTTDTKFNGREMISLSSSNVKQIAGRAGRFKQENNGKNG 506
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEK 622
G T+ + + L + L+QP E ++ ++P E +L T +LL +
Sbjct: 507 NSTVGYVTSFDKEVLKSVKRGLEQPIEYIESAVIWPTDEINTQILNKLPPKTELSELLIE 566
Query: 623 FGENCRLDGSYFLCRHDHIKKVANMLE---KVQGLSLEDRFNFCFAPVNIRD-PKAMYHL 678
+ + + D ++ N++E +V G+ L D+ AP ++D P
Sbjct: 567 ISKELKKSSNNMFMLTD-LRNRLNLIEVFKEVDGIPLNDKLKLSNAP--MKDLPLVRLAF 623
Query: 679 LRFASSYSKNAPVSI-AMGMPKGSAKNDAELLDL-------------ETKHQVLSMYLWL 724
+F + + +I + +P ELLD E+ + +++++LWL
Sbjct: 624 KQFCETIANRKTKTILSYNLP-------FELLDFDCIYDDKYGLDMYESLYNIITLFLWL 676
Query: 725 SHQF 728
S+++
Sbjct: 677 SNRY 680
>gi|317035069|ref|XP_001401003.2| ATP-dependent RNA helicase SUV3 [Aspergillus niger CBS 513.88]
Length = 755
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 188/486 (38%), Positives = 285/486 (58%), Gaps = 32/486 (6%)
Query: 270 FRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
A + ADL +P W+P AR ++R I H GPTNSGKTY+AL+R +K+G Y PLRL
Sbjct: 170 LEAQKKVADLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRL 229
Query: 330 LAMEVFDKVNALGVYCSLLTGQEKKLV---PFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LA EVF + A G CSL+TG + K+ S ++ TVEMVS + Y+V V+DEIQM+
Sbjct: 230 LAQEVFHRFQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMI 289
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
+D RG+AWTRA+LG A E+HLCG+ + +++++ + TGD+L YER PL V+ +
Sbjct: 290 ADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNR 349
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
+L GDL+N++ GDC+V+FSR I +K IEK T ++YG+LP E R QQA+LFND
Sbjct: 350 SLKGDLKNLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIVYGSLPAEIRTQQASLFNDP 409
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGRAGR---- 560
DN++D LVASDA+GMGLNL+ +R++F +L K G + + VP ++KQI GRAGR
Sbjct: 410 DNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVP--EIKQIGGRAGRYRSA 467
Query: 561 -----RGSIYPD----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP---FFEQVELFA 608
GS D G T+L DL Y+ E ++ + G+ P +++V +
Sbjct: 468 AQQQENGSSSEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVSAGILPPDSVYQKVAAYF 527
Query: 609 GQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN 668
SN L+++ ++ +FLC + + A +++ V GL D+ F +P++
Sbjct: 528 P--SNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPMH 585
Query: 669 IR---DPKAMYHLLRFASSYSKNAPVSI-AMG---MPKGSAKNDAELLDLETKHQVLSMY 721
R A ++ + +S + I A+ + + + N L +LET H+ + +Y
Sbjct: 586 TRLIAGRDAAIAFIQCVAEHSDGRLLDIQALNLEILEEPVSGNKEYLNELETLHKSVILY 645
Query: 722 LWLSHQ 727
LWLS++
Sbjct: 646 LWLSYR 651
>gi|350639476|gb|EHA27830.1| hypothetical protein ASPNIDRAFT_185630 [Aspergillus niger ATCC
1015]
Length = 636
Score = 325 bits (833), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 188/486 (38%), Positives = 285/486 (58%), Gaps = 32/486 (6%)
Query: 270 FRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
A + ADL +P W+P AR ++R I H GPTNSGKTY+AL+R +K+G Y PLRL
Sbjct: 51 LEAQKKVADLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRL 110
Query: 330 LAMEVFDKVNALGVYCSLLTGQEKKLV---PFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LA EVF + A G CSL+TG + K+ S ++ TVEMVS + Y+V V+DEIQM+
Sbjct: 111 LAQEVFHRFQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMI 170
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
+D RG+AWTRA+LG A E+HLCG+ + +++++ + TGD+L YER PL V+ +
Sbjct: 171 ADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNR 230
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
+L GDL+N++ GDC+V+FSR I +K IEK T ++YG+LP E R QQA+LFND
Sbjct: 231 SLKGDLKNLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIVYGSLPAEIRTQQASLFNDP 290
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGRAGR---- 560
DN++D LVASDA+GMGLNL+ +R++F +L K G + + VP ++KQI GRAGR
Sbjct: 291 DNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVP--EIKQIGGRAGRYRSA 348
Query: 561 -----RGSIYPD----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP---FFEQVELFA 608
GS D G T+L DL Y+ E ++ + G+ P +++V +
Sbjct: 349 AQQQENGSSSEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVSAGILPPDSVYQKVAAYF 408
Query: 609 GQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN 668
SN L+++ ++ +FLC + + A +++ V GL D+ F +P++
Sbjct: 409 P--SNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPMH 466
Query: 669 IR---DPKAMYHLLRFASSYSKNAPVSI-AMG---MPKGSAKNDAELLDLETKHQVLSMY 721
R A ++ + +S + I A+ + + + N L +LET H+ + +Y
Sbjct: 467 TRLIAGRDAAIAFIQCVAEHSDGRLLDIQALNLEILEEPVSGNKEYLNELETLHKSVILY 526
Query: 722 LWLSHQ 727
LWLS++
Sbjct: 527 LWLSYR 532
>gi|46132986|ref|XP_389198.1| hypothetical protein FG09022.1 [Gibberella zeae PH-1]
Length = 752
Score = 325 bits (833), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 185/481 (38%), Positives = 270/481 (56%), Gaps = 33/481 (6%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D P+ WFP R M+RKI H GPTNSGKTY AL+ +K+G+Y PLRLLA EV+ +
Sbjct: 187 DFRFPYEWFPATRAMQRKIHVHVGPTNSGKTYRALKALEASKRGVYAGPLRLLANEVYQR 246
Query: 338 VNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+ A G+ C+LLTG+E ++ ++ +CTVEMV +E +DVAVIDEIQM++D RG W
Sbjct: 247 LTAKGLPCALLTGEEVRVPSDTDTYFTSCTVEMVPVNEQFDVAVIDEIQMIADEDRGQGW 306
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
ALLG+ A E+HLCG+ + ++ IC+ GDE YER PL L+GD +
Sbjct: 307 ATALLGVQAKEVHLCGEERTVKLIESICASIGDECIVHRYERLSPLEPMDNALMGDYGKL 366
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
GD VVAFSR + +K+ IEK T C +IYG+LPPE R QQA LFND DN++D +VA
Sbjct: 367 EKGDAVVAFSRMNLHALKLTIEKKTGRRCAIIYGSLPPEVRVQQAALFNDPDNDYDFIVA 426
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRAGRRGS---------- 563
SDA+GMGLNL IRRVV + +KY+G ++++ P ++KQI GRAGR +
Sbjct: 427 SDAIGMGLNLEIRRVVLETCAKYDGSHNRLLSYP--ELKQIGGRAGRYKTARNATEGTES 484
Query: 564 ----IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQ 618
I G TT++ DL + + + ++ + P VE F+ + T
Sbjct: 485 EVTEIRKVGYVTTMDRQDLKVVHKAFEADVPDIEYAYVTPPASVVERFSTYFPSQTPLSF 544
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
+L + E + + L ++A+M++ + L++ DR F P+ R A+ L
Sbjct: 545 ILMRIKELASVSKLFRLHISTEKLEIADMIQDIP-LTIYDRLTFTNLPIAARAENAVPVL 603
Query: 679 LRFASSYSKNA----------PV-SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQ 727
AS +KN P+ ++ + + K L LE+ HQ ++ Y+WLS++
Sbjct: 604 RALASVVAKNGSGDLLSIKEIPLENLDIDLKTFRGKPIEYLHKLESLHQAINQYIWLSYR 663
Query: 728 F 728
F
Sbjct: 664 F 664
>gi|392580456|gb|EIW73583.1| hypothetical protein TREMEDRAFT_12580, partial [Tremella
mesenterica DSM 1558]
Length = 710
Score = 325 bits (832), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 225/616 (36%), Positives = 315/616 (51%), Gaps = 97/616 (15%)
Query: 213 SFFP-TAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEF----CIEEFPDEI 267
SF P + + S +KK V Q L + P + AV + F + PD++
Sbjct: 61 SFLPEVVSDEEASVALKKAGFHVDQ-LKAIAPDNFAVPLEAALLRHFLSSISTQPLPDQL 119
Query: 268 K-RFRAMIESADLTKPHTWFPF------ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKK 320
K RA+++ D++ PF AR M R H GPTNSGKTY+AL+ A
Sbjct: 120 KEHIRALLDVTDISH----LPFSGEYISARSMSRHFHLHIGPTNSGKTYSALKALSRAGT 175
Query: 321 GIYCSPLRLLAMEVFDKVN--------ALGVYCSLLTGQEKKLV-PFSNHIACTVEMVST 371
G Y PLRLLA EV++++N G C+L+TG+E+++V P + I+CTVEM+
Sbjct: 176 GAYAGPLRLLAHEVWERLNLGTVGDMNGKGRECNLVTGEERRIVDPDAGLISCTVEMLPI 235
Query: 372 D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVV-RKICSET 426
YDV V+DEIQMM D RG AWT ++ L A EIHLCGD + + ++ R + S
Sbjct: 236 SGPLGSPYDVVVVDEIQMMGDPQRGSAWTNVVMKLRAHEIHLCGDETTVGLLKRMVASFG 295
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
GD+L Y+R PL V K+L + VR GDCVV FSR IF V+ +E C +
Sbjct: 296 GDQLTVHRYDRLTPLTVADKSLGSSYKGVRKGDCVVTFSRSGIFYVRREVESFAKKKCAM 355
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+YGALPPETR +QA FND++ +VLVASDAVGMGLNL I+R++F SL K+NG + +P+
Sbjct: 356 VYGALPPETRAEQARDFNDENGRAEVLVASDAVGMGLNLKIKRMIFSSLHKFNGKQDVPL 415
Query: 547 PGSQVKQIAGRAGRRG-----------------SIYPD------GLTTTLNLDDLDYLIE 583
+Q+KQIAGRAGR G SI PD G+ TT + DL L
Sbjct: 416 SLTQIKQIAGRAGRFGMSTTTPDPHATPQLDLPSIAPDEKPSEGGIVTTFHESDLPILRS 475
Query: 584 CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIK 642
L QP + + L FE + A L T F +LL+ + + L H
Sbjct: 476 LLHQPLPPITRATLDVPFENMSALAALLPPETKFSELLDHVYSLVLVPPNMTLGSMQHKL 535
Query: 643 KVANMLEKVQ-GLSLEDRFNFCFAPVNIRDPKAM--YHLLRFASSY-------------- 685
+A ++E+ + GL+L + +APVN RDP+A+ YH L AS+Y
Sbjct: 536 PLAKVVEEFRSGLTLSEMDLLTYAPVNGRDPRALGVYHSL--ASTYASVGHVTLDNMFDS 593
Query: 686 ---------------------SKNAPVSIAMGMPKGSAKNDAE-LLDLETKHQVLSMYLW 723
S P S PK ++ ++ L +ET H+ L +Y+W
Sbjct: 594 SGFYEQLRKMEKVINDLINPPSSREPQSQTQEKPKSVSQIISDNLPGMETLHKTLVLYIW 653
Query: 724 LSHQFKEEVFPYAKKA 739
LS++ +E FP +KA
Sbjct: 654 LSYR-REVSFPDREKA 668
>gi|83776193|dbj|BAE66312.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 635
Score = 325 bits (832), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 272/478 (56%), Gaps = 28/478 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD+ P W+P AR ++R I H GPTNSGKTY AL++ +K G Y PLRLLA EV+
Sbjct: 66 ADMRFPAEWYPQARSIQRTIHLHVGPTNSGKTYQALKKLEASKSGFYAGPLRLLAQEVYH 125
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
+ A G CSL+TG + K +P ++ TVEMV+ + YDV VIDEIQM+ D RG+
Sbjct: 126 RFQANGTTCSLVTGDDVK-IPEGQAPTIVSNTVEMVNLGQPYDVGVIDEIQMIGDPKRGW 184
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+P V+ ++R++ + TGD+L YER PL V ++L GDL+
Sbjct: 185 AWTRAVLGARAKELHLCGEPRVVPLIRELAALTGDKLEIHRYERLNPLKVMDRSLRGDLK 244
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
N++ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +NE+D L
Sbjct: 245 NLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIVYGSLPAEIRTQQASLFNDPNNEYDYL 304
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
VASDA+GMGLNL+ +R++F +L K ++ + ++KQIAGRAGR S
Sbjct: 305 VASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLSVPEIKQIAGRAGRYRSAAQQQKKGKA 364
Query: 568 --------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ- 618
G T+L DL Y+ + + + G+FP + FA +
Sbjct: 365 AEYDGTNVGYVTSLEEVDLPYIHQAMGIEPPPITAAGVFPPEPIFQRFAAYFPQSVPLEY 424
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
++++ + ++ +F+C A +++ V GL ED+ F AP++ RD +
Sbjct: 425 IIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTVSGLRFEDQMTFMAAPMHTRDISSRDVA 484
Query: 679 LRFASSYSKNAPVSIAMGMP--------KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
FA +++ + + +P + + N L DLE H+ + +Y WLS +F
Sbjct: 485 CAFAQCVAEHTGGRL-LDIPDLNLEILEEPVSGNKEYLHDLEILHKSVILYSWLSFRF 541
>gi|238506895|ref|XP_002384649.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus flavus NRRL3357]
gi|220689362|gb|EED45713.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus flavus NRRL3357]
Length = 635
Score = 325 bits (832), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 272/478 (56%), Gaps = 28/478 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD+ P W+P AR ++R I H GPTNSGKTY AL++ +K G Y PLRLLA EV+
Sbjct: 66 ADMRFPAEWYPQARSIQRTIHLHVGPTNSGKTYQALKKLEASKSGFYAGPLRLLAQEVYH 125
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
+ A G CSL+TG + K +P ++ TVEMV+ + YDV VIDEIQM+ D RG+
Sbjct: 126 RFQANGTTCSLVTGDDVK-IPEGQAPTIVSNTVEMVNLGQPYDVGVIDEIQMIGDPKRGW 184
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+P V+ ++R++ + TGD+L YER PL V ++L GDL+
Sbjct: 185 AWTRAVLGARAKELHLCGEPRVVPLIRELAALTGDKLEIHRYERLNPLKVMDRSLRGDLK 244
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
N++ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +NE+D L
Sbjct: 245 NLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIVYGSLPAEIRTQQASLFNDPNNEYDYL 304
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
VASDA+GMGLNL+ +R++F +L K ++ + ++KQIAGRAGR S
Sbjct: 305 VASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLSVPEIKQIAGRAGRYRSAAQQQKKGKA 364
Query: 568 --------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ- 618
G T+L DL Y+ + + + G+FP + FA +
Sbjct: 365 AENDGTNVGYVTSLEEVDLPYIHQAMGIEPPPITAAGVFPPEPIFQRFAAYFPQSVPLEY 424
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
++++ + ++ +F+C A +++ V GL ED+ F AP++ RD +
Sbjct: 425 IIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTVSGLRFEDQMTFMAAPMHTRDISSRDVA 484
Query: 679 LRFASSYSKNAPVSIAMGMP--------KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
FA +++ + + +P + + N L DLE H+ + +Y WLS +F
Sbjct: 485 CAFAQCVAEHTGGRL-LDIPDLNLEILEEPVSGNKEYLHDLEILHKSVILYSWLSFRF 541
>gi|134081681|emb|CAK46615.1| unnamed protein product [Aspergillus niger]
Length = 642
Score = 325 bits (832), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 188/486 (38%), Positives = 285/486 (58%), Gaps = 32/486 (6%)
Query: 270 FRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
A + ADL +P W+P AR ++R I H GPTNSGKTY+AL+R +K+G Y PLRL
Sbjct: 57 LEAQKKVADLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRL 116
Query: 330 LAMEVFDKVNALGVYCSLLTGQEKKLV---PFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LA EVF + A G CSL+TG + K+ S ++ TVEMVS + Y+V V+DEIQM+
Sbjct: 117 LAQEVFHRFQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMI 176
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
+D RG+AWTRA+LG A E+HLCG+ + +++++ + TGD+L YER PL V+ +
Sbjct: 177 ADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNR 236
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
+L GDL+N++ GDC+V+FSR I +K IEK T ++YG+LP E R QQA+LFND
Sbjct: 237 SLKGDLKNLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIVYGSLPAEIRTQQASLFNDP 296
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGRAGR---- 560
DN++D LVASDA+GMGLNL+ +R++F +L K G + + VP ++KQI GRAGR
Sbjct: 297 DNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVP--EIKQIGGRAGRYRSA 354
Query: 561 -----RGSIYPD----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP---FFEQVELFA 608
GS D G T+L DL Y+ E ++ + G+ P +++V +
Sbjct: 355 AQQQENGSSSEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVSAGILPPDSVYQKVAAYF 414
Query: 609 GQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN 668
SN L+++ ++ +FLC + + A +++ V GL D+ F +P++
Sbjct: 415 P--SNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPMH 472
Query: 669 IR---DPKAMYHLLRFASSYSKNAPVSI-AMG---MPKGSAKNDAELLDLETKHQVLSMY 721
R A ++ + +S + I A+ + + + N L +LET H+ + +Y
Sbjct: 473 TRLIAGRDAAIAFIQCVAEHSDGRLLDIQALNLEILEEPVSGNKEYLNELETLHKSVILY 532
Query: 722 LWLSHQ 727
LWLS++
Sbjct: 533 LWLSYR 538
>gi|164662192|ref|XP_001732218.1| hypothetical protein MGL_0811 [Malassezia globosa CBS 7966]
gi|159106120|gb|EDP45004.1| hypothetical protein MGL_0811 [Malassezia globosa CBS 7966]
Length = 587
Score = 324 bits (831), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 206/578 (35%), Positives = 301/578 (52%), Gaps = 82/578 (14%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL P + AR + R+I H GPTNSGKT+ AL +A+ G+Y PLRLLA EV+++
Sbjct: 11 DLRAPSLTYSSARSLTRQIHLHVGPTNSGKTHGALVTLSKARTGLYAGPLRLLAHEVWER 70
Query: 338 VNALGV-------YCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
+N + C+L TG+E ++V ++ ++CTVEM Y+VAVIDEIQM++D
Sbjct: 71 MNQGTISPSIQPRACNLRTGEEVRVVDEYAGLVSCTVEMADVTRAYEVAVIDEIQMIADI 130
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT+A+LGL A E+HLCG+ S + +++++ GDELH +Y R PL V + +L
Sbjct: 131 QRGFAWTQAVLGLPAKELHLCGEASAVPLIQRLVEMCGDELHIHNYNRLSPLHVASSSLR 190
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
GDL V GDCVVAFSR IF +K IE T C V YGALPPE + +QA LFN +
Sbjct: 191 GDLTKVEPGDCVVAFSRSTIFWLKEQIEARTGLQCAVAYGALPPEIKSEQAKLFN--SGK 248
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY---- 565
DV+VASDA+GMGLNL IRRV+F +LSK+NG + +P+ SQ+KQIAGRAGR G+
Sbjct: 249 LDVMVASDAIGMGLNLRIRRVIFDTLSKWNGKEQVPLSLSQIKQIAGRAGRYGTSRDKNE 308
Query: 566 -PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFA---------------- 608
P GL T N ++++YL L P + + P ++E A
Sbjct: 309 EPSGLVLTRNENEMEYLRAALAAPVRPITHAQIQPSTRKLESLALLLPRARTRGPSSSRR 368
Query: 609 -GQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG---LSLEDRFNFCF 664
+ + + LLE+F LD F +K + + + +G L+ ++ +
Sbjct: 369 RVSIHDNSVSTLLEEFHAFADLDAGVFSMADFVSQKAMSTIIEHRGRDRLTHAEKEKWSN 428
Query: 665 APVNIRDPKAMY------------HLLRFASSY----SKNAPVSIAMGMPKGSAK----- 703
PVN+RD +A+ L+RF + + A +IA M +
Sbjct: 429 TPVNMRDERAVAWVGNAIERYARGELVRFEACAKELGTMEAEEAIAQIMRDAQTRHKVAG 488
Query: 704 ----------------NDAELLDLETKHQVLSMYLWLSHQ------FKEEVFPYAKKAEA 741
N L+ LE+ H+ L++YLWL + F+ +V ++ EA
Sbjct: 489 SEQSVVMFAQQDETVLNIHTLMLLESLHRTLTLYLWLGFRFPLAFCFRHDVEARKQRTEA 548
Query: 742 MATDIAELL----GQSLTNANWKPESRQAGKPKLHQQR 775
E + Q LT K E+ K +H++R
Sbjct: 549 SIEFCLEAIRVRRAQRLTRLGRKEEAHVLLKKHVHRKR 586
>gi|392596329|gb|EIW85652.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 889
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 216/634 (34%), Positives = 309/634 (48%), Gaps = 101/634 (15%)
Query: 232 DDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARV 291
D+ L++ +D A P V + + + + ++ADL+ P WFP AR
Sbjct: 197 DEAMTQLLYTWAADPATSPTLPSTVRR------ESLAQMANLAKTADLSYPAEWFPVARA 250
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY------- 344
M+RK+I H GPTNSGKT+NAL+ A+ G+Y PLRLLA E+++++N +
Sbjct: 251 MRRKVIMHVGPTNSGKTHNALRALAAARCGVYAGPLRLLAHEIWERLNKGQIVPLGETPD 310
Query: 345 -----------------------------------------CSLLTGQEKKLVP-FSNHI 362
C+L TG+E ++V F+
Sbjct: 311 ADARPDENTNFDLEPKSAGAGAATAATVAVTKDGHAKYARACNLRTGEEIRIVEDFAELT 370
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+CTVEM+ D DVAVIDEIQM++D RG AWT A+LGL A E+HLCG+ + + VV I
Sbjct: 371 SCTVEMLELDAQPDVAVIDEIQMIADPERGPAWTHAVLGLPAKELHLCGEETAVPVVEAI 430
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
+TGDEL YER PL VE +L GD VR GDCVV FSR IF +K IE+ T
Sbjct: 431 LRDTGDELIVNRYERLSPLSVEESSLDGDWGLVRKGDCVVTFSRTGIFNIKREIEEATGL 490
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
C V YG LPPE R +QA LFND ++E+DV++ SDA+GMGLNL I+RVVF +L K++G +
Sbjct: 491 RCAVAYGKLPPEIRSEQAALFNDPNSEYDVMIGSDAIGMGLNLKIKRVVFETLRKFDGTR 550
Query: 543 IIPVPGSQVKQIAGRAGRRG-SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601
+ SQ+KQIAGRAGR G G TTL DL L + L P V L
Sbjct: 551 ERWLSLSQIKQIAGRAGRYGLHAEAGGTVTTLTPTDLPMLHKALATPAPAVPCAILDVGG 610
Query: 602 EQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLE-KVQGLSLEDR 659
++E + L +N + L+ R + + RH + ++A L+ + L+L ++
Sbjct: 611 ARLEALSHALPANASMEAHLQVPTYISRRQRPFGVVRHARLPQIAEFLDTRGTDLTLAEK 670
Query: 660 FNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPK-------------------- 699
+APV +D M L F Y V + + K
Sbjct: 671 MTLAYAPVAWQDQLTMEVLGEFCRMYRNTVLVDLFKALEKAPFVETLEGVEERAAALASS 730
Query: 700 ---------------------GSAKNDA-ELLDLETKHQVLSMYLWLSHQFKEEVFPYAK 737
G DA EL +ET H+VL +YLWL ++ + +
Sbjct: 731 GVAAATAGGDAGEGKVVVEAQGEEVTDARELQIIETLHKVLVLYLWLGNR-APAAYHQTE 789
Query: 738 KAEAMATDIAELLGQSLTNANWKPESRQAGKPKL 771
+A A+ T + L L + +W+ ++ GK ++
Sbjct: 790 QAFALKTRVERALDVGLQSMSWRRAAKAKGKARV 823
>gi|363749699|ref|XP_003645067.1| hypothetical protein Ecym_2529 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888700|gb|AET38250.1| Hypothetical protein Ecym_2529 [Eremothecium cymbalariae
DBVPG#7215]
Length = 727
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 185/480 (38%), Positives = 281/480 (58%), Gaps = 36/480 (7%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D++ P W+ AR +KRKI+ H GPTNSGKTYNAL++ +A +G Y PLRLLA EV+DK
Sbjct: 205 DISNPSEWYSGARKLKRKIVMHLGPTNSGKTYNALEKLKKATRGYYAGPLRLLAREVYDK 264
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHI-------ACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
+ C+LLTG+E ++ +HI + TVEM+ ++ +DV V+DEIQM++D
Sbjct: 265 FKQQNIRCNLLTGEE--IINDLDHIGNKAGLTSGTVEMIPLNQEFDVVVLDEIQMLADEQ 322
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT A LG + E+HLCG+ SVL +++K+ TGD+L Y R LV+E++ L
Sbjct: 323 RGWAWTNAFLGARSSEVHLCGERSVLPLIQKLVKITGDDLIVNEYSRLGKLVIESEPLSL 382
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ GDC+++FS+R+I +K+ +E+ TN+ VIYG+LPPETR +QAN+FN +
Sbjct: 383 GFSGLKKGDCLISFSKRKILNLKLKVERCTNYKVSVIYGSLPPETRIKQANMFNSGHS-- 440
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-----RGSIY 565
D+L+ASDAVGMGLNL+I+R+VF SK+NG ++ P+ +KQI GRAGR +
Sbjct: 441 DILIASDAVGMGLNLSIKRIVFTESSKWNGAEMQPLEDPIIKQIGGRAGRYKPKDNSDVN 500
Query: 566 PD-GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY----TFCQLL 620
P G T L+ + L + + P + ++P E+ L+ Y F L+
Sbjct: 501 PSKGYVTGLDDEILSAVRSGINAPITYLSSAIIWP---TEEIITSALAKYQPGTKFSTLI 557
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANM--LEKVQGLSLEDRFNFCFAPVNIRD-PKAMYH 677
E F + + D KK+ + EK++GLSL D +AP IRD P
Sbjct: 558 ENFNRDVTTKSNNLYTLADSSKKIEFIREYEKIEGLSLRDLIKLSYAP--IRDSPLLKTT 615
Query: 678 LLRFASSYSKNAPVSI---AMGMPKGSA---KNDAELLDL-ETKHQVLSMYLWLSHQFKE 730
L+F + +K S+ A+ + K ++ KN+ LD E H ++ M++WL+ ++ E
Sbjct: 616 FLKFCHTIAKKQTKSLLNYALPLDKLNSKYIKNEDVALDFYEELHHIVMMFMWLNIRYPE 675
>gi|358374212|dbj|GAA90806.1| mitochondrial ATP-dependent RNA helicase Suv3 [Aspergillus kawachii
IFO 4308]
Length = 640
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 186/484 (38%), Positives = 283/484 (58%), Gaps = 30/484 (6%)
Query: 270 FRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
A + ADL +P W+P AR ++R I H GPTNSGKTY+AL+R +K+G Y PLRL
Sbjct: 57 LEAQKKVADLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRL 116
Query: 330 LAMEVFDKVNALGVYCSLLTGQEKKLV---PFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LA EVF + A G CSL+TG + K+ S ++ TVEMVS + Y+V V+DEIQM+
Sbjct: 117 LAQEVFHRFQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMI 176
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
+D RG+AWTRA+LG A E+HLCG+ + +++++ + TGD+L YER PL V+ +
Sbjct: 177 ADPHRGWAWTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNR 236
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
+L GDL+N++ GDC+V+FSR I +K IEK+T ++YG+LP E R QQA+LFND
Sbjct: 237 SLKGDLKNLQKGDCLVSFSRVGIHALKADIEKNTGKRAAIVYGSLPAEIRTQQASLFNDP 296
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGRAGRRGSI 564
DN++D LVASDA+GMGLNL+ +R++F +L K G + + VP ++KQI GRAGR S
Sbjct: 297 DNDYDFLVASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVP--EIKQIGGRAGRYRSA 354
Query: 565 YPD-----------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP---FFEQVELFAGQ 610
G T+L DL Y+ E + + G+ P +++V +
Sbjct: 355 AQQQADSSEEDTNVGYVTSLEDIDLPYIREAMDSEPPPLVSAGILPPDSVYQKVAAYFP- 413
Query: 611 LSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR 670
SN L+++ ++ +FLC + + A +++ V GL D+ F +P++ R
Sbjct: 414 -SNVPLEYLIKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPMHTR 472
Query: 671 ---DPKAMYHLLRFASSYSKNAPVSI-AMG---MPKGSAKNDAELLDLETKHQVLSMYLW 723
A ++ + +S + I A+ + + + N L +LET H+ + +YLW
Sbjct: 473 LIAGRDAAIAFIKCVAEHSDGRLLDIQALNLEILEEPVSGNKEYLNELETLHKSVILYLW 532
Query: 724 LSHQ 727
LS++
Sbjct: 533 LSYR 536
>gi|190345490|gb|EDK37387.2| hypothetical protein PGUG_01485 [Meyerozyma guilliermondii ATCC
6260]
Length = 566
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 195/511 (38%), Positives = 292/511 (57%), Gaps = 36/511 (7%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
S DL+ P +WFP AR MKRK++ H GPTNSGKTYN+LQ ++K G Y PLRLLA E++
Sbjct: 50 SVDLSSPASWFPEARKMKRKLVLHVGPTNSGKTYNSLQELAKSKSGYYAGPLRLLAREIY 109
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSNHI-------ACTVEMVSTDEMYDVAVIDEIQMMSD 388
++ N G+ C+L+TG+E +VP + + + T+EM+ + D VIDEIQM++D
Sbjct: 110 ERFNQQGIRCNLITGEE--VVPSIDEVGKVSDISSGTIEMIPLHKPMDTCVIDEIQMIAD 167
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG AWT A+LG+ A IH+CG+ S + +++K+ + TGDEL + YER L V K
Sbjct: 168 DRRGSAWTGAVLGVQAKVIHMCGEQSAVPLIKKLANITGDELEIKTYERLGKLTVAQKE- 226
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
L L+ + GDCV+AFS+R+I E+K IEK T VIYGALPPE R ++AN FN
Sbjct: 227 LHSLKKLAKGDCVIAFSKRKILELKCEIEKMTKFRVGVIYGALPPEIRSKEANGFN--SG 284
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR--RGSIYP 566
++D+LVASDAVGMGLNL I+RVVF++ +K+NG + +P+ S KQIAGRAGR G
Sbjct: 285 QYDILVASDAVGMGLNLKIKRVVFFTTTKFNGSETVPLTASATKQIAGRAGRFSAGKGQS 344
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFG- 624
+G T L DL ++ + + +P + + K ++P + L+ + T F ++L +F
Sbjct: 345 EGFVTALKAKDLRHVRKMMAEPNQDLVKACIWPTNKIWMLYMSKFPQGTSFYEILSQFAH 404
Query: 625 ENCRLDGS-YFLCRHDHIKKVANMLEK---VQGLSLEDRFNFCFAPVNIRDPKAMY--HL 678
E + S +F+ D + + K + +ED+ AP+NIR +
Sbjct: 405 ETADVKMSDFFVTELDERFDILKLFLKKDLFKKTMIEDQLTLSLAPINIRMASKLIVDTA 464
Query: 679 LRFASSYSKNAPVSI----------AMGMPKGS--AKNDAELLD-LETKHQVLSMYLWLS 725
F + SK +I P+ S A+ E L LE H+++ ++LWLS
Sbjct: 465 FDFFETISKCETKTIFDFHFLHTKLLEQEPRKSTTAEETVERLRLLEENHKLVLIFLWLS 524
Query: 726 HQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
++ +F + A + T I + + + L N
Sbjct: 525 QRWP-TLFVDKESATDVKTLIEKRISEELIN 554
>gi|207340471|gb|EDZ68808.1| YPL029Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150128|emb|CAY86931.1| Suv3p [Saccharomyces cerevisiae EC1118]
gi|323352061|gb|EGA84600.1| Suv3p [Saccharomyces cerevisiae VL3]
gi|365762858|gb|EHN04391.1| Suv3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+R+I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKRKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>gi|403417869|emb|CCM04569.1| predicted protein [Fibroporia radiculosa]
Length = 673
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 211/582 (36%), Positives = 307/582 (52%), Gaps = 78/582 (13%)
Query: 264 PDEIKRFRAMIESADLTKPHTWFPFARVMK-RKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
P I + +ADL++P + +P AR K RK+I H GPTNSGKT+NAL+ A+ G+
Sbjct: 68 PRTIMTMSELFRAADLSRPASAYPVARAAKPRKVIMHVGPTNSGKTHNALRALAGAQSGV 127
Query: 323 YCSPLRLLAMEVFDKVN-----ALGV-------------------------------YCS 346
Y PLRLLA E+++++N LGV C+
Sbjct: 128 YAGPLRLLAHEIWERLNKGQIVPLGVEMDAHTEPDTRTNFDVGGPAIRKEASPQYARACN 187
Query: 347 LLTGQEKKLVPFSNHI-ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
LLTG+E+K+V S + +CTVEMVS + YDVAV+DEIQM++D RG AW+ A+LG+ A
Sbjct: 188 LLTGEEQKIVMESGALLSCTVEMVSVNAEYDVAVVDEIQMLADPDRGGAWSNAVLGISAR 247
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E+HLCG+ + + +V + +TGDEL Y R PL + L DL V+ GDCVV FS
Sbjct: 248 ELHLCGEETAVPLVEAMLRDTGDELIVNRYRRLTPLQAADEGLKNDLNLVQKGDCVVCFS 307
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R +IF K IE+ T C V YG LPPE R +QA LFND D+ +D+LVASDAVGMGLNL
Sbjct: 308 RTKIFTYKKRIEEATGMRCAVAYGRLPPEIRSEQAALFNDPDSGYDILVASDAVGMGLNL 367
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD---GLTTTLNLDDLDYLI 582
I+R++F ++ KY+G++++ + SQ+KQIAGRAGR G D G+ T + DL +
Sbjct: 368 KIKRIIFDTVRKYDGNRLVLLSTSQIKQIAGRAGRYGLHGKDEAGGIVTAMQDADLPDIR 427
Query: 583 ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQL-LEKFGENCRLDGSYFLCRHDHI 641
L P + ++ + + + L Q+ ++ + +L SY + +
Sbjct: 428 RALAAPMQPLRYARVQLLSQSIRYVMNTLPPGVSLQIAVDVYHYVAKLHPSYEIPDTRDL 487
Query: 642 KKVANMLEKV-QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI------- 693
+ ++++ + + S +R APV RDP A L +Y+ + VS+
Sbjct: 488 ENRISLIDPIGKNNSFNERMLLHMAPVPQRDPLAQDVLRCIVRTYNSSMRVSLRKAFQEA 547
Query: 694 -----------AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF------KEEVFPYA 736
A+ K L LET H+V+ MYLWLS++ +E+ F
Sbjct: 548 GVWDQYQDILTALRESKIQGDKSVMLGVLETVHKVIVMYLWLSYRQGVAFPDQEDAFLLK 607
Query: 737 KKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDG 778
++ EA A D L Q+LT P S GK +R+DG
Sbjct: 608 EETEA-AMDT---LLQALT-----PSS--VGKRHTRARRDDG 638
>gi|255724706|ref|XP_002547282.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135173|gb|EER34727.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 738
Score = 322 bits (825), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 188/527 (35%), Positives = 292/527 (55%), Gaps = 40/527 (7%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
++I + + D++ P WFP AR MKRKI+ H GPTNSGKTYN+L + ++K G
Sbjct: 196 LKEKIAKVSYQSSTIDISVPAEWFPEARKMKRKIVMHVGPTNSGKTYNSLVKLSKSKTGY 255
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF-------SNHIACTVEMVSTDEMY 375
Y PLRLLA EV+++ N GV C+L+TG+E +VPF S + T+EM+
Sbjct: 256 YAGPLRLLAREVYERFNDQGVGCNLITGEE--IVPFIDEHGKISGLASGTIEMIPLHRKM 313
Query: 376 DVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHY 435
D+ VIDEIQM++D+ RG WT A+LG++A EIHLCG+ S + +++KI TGDEL +H+
Sbjct: 314 DLCVIDEIQMIADSRRGSVWTNAVLGVLAHEIHLCGEESAVPLIQKIVEITGDELEVKHF 373
Query: 436 ERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
+R L VE + L ++ GDC+VAFS+R+I + K IE+ + V+YGALPPE
Sbjct: 374 KRLGKLTVEKTS--TRLSQLKKGDCLVAFSKRKIMDYKCRIEQESRLKVGVVYGALPPEI 431
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R Q+A FN E+DVLVASDAVGMGLNL I RVVF +SKY+G + + SQVKQIA
Sbjct: 432 RSQEAAKFN--RGEYDVLVASDAVGMGLNLKINRVVFSGISKYDGSVVKNLTVSQVKQIA 489
Query: 556 GRAGR--RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF--FEQVELFAGQL 611
GRAGR + + +G T L L Y+ ECL++P +++ ++P + + G+
Sbjct: 490 GRAGRYSKDTGSKEGFVTALQRSSLVYIQECLREPVSYLQQACIWPTNNIWRNYMVNGRT 549
Query: 612 SNYTFCQLLEKFGENCRLD--GSYFLCRHDHIKKVANML---EKVQGLSLEDRFNFCFAP 666
+L + G YF+ D ++ +++ + + +S++D+ C P
Sbjct: 550 DKVQLSDVLRSYFSTMLTTRHGLYFVSEWDQKVELLDLISSDKHLSRMSIDDQLTLCETP 609
Query: 667 VNIRDPKAMYHLLRFASSYSKNAP------------VSIAMGMPKGSAKNDAELL----- 709
+ + K +L+ + K + + + + +D +
Sbjct: 610 IGLAKAKGSQVMLQAVHDFFKTIVDRDCKSIFDYKFLDLELISQRAVINSDLNVTLKNVD 669
Query: 710 DLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
+LE H++L +++WLS +F +F + A M + + + + LTN
Sbjct: 670 NLENMHKMLLLFMWLSQRF-PTLFIDKESALEMKVLVEKRITEELTN 715
>gi|342180609|emb|CCC90085.1| putative RNA helicase [Trypanosoma congolense IL3000]
Length = 620
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 198/524 (37%), Positives = 288/524 (54%), Gaps = 44/524 (8%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R + + +P W+P AR M+R+ I+H GPTNSGKT+ AL+ ++AK G+YC+P++ L
Sbjct: 98 RKAPQRVTMHEPWDWYPKARFMRRRFIFHHGPTNSGKTHAALEELVKAKSGVYCAPIKAL 157
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
A +V+ VNA V C LL G E+K + H++CTVEM D DV VIDE+QMM D
Sbjct: 158 ASQVWKHVNAR-VPCDLLIGDERKFGGGAEHVSCTVEMTPIDYQVDVGVIDEVQMMGDRD 216
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET--GDELHEQHYERFKPLVVEAKTL 448
RG+AW RA+LGL A EIHLCG+ + +VRK+ T + L +ER PL V + TL
Sbjct: 217 RGWAWARAILGLPAREIHLCGEGRAIPLVRKLLHRTREANSLRLMSHERLVPLEV-SPTL 275
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN---- 504
GDLR V +GDC+V FSRR IF +K + + IYG++P R QA+ FN
Sbjct: 276 NGDLRLVENGDCLVCFSRRAIFTLKERLGRLPGVTPHYIYGSMPFSVREAQADAFNRGVR 335
Query: 505 ----DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
E VLV++DA+ GLN++I R++F S+ K++G +++ +P + + Q+AGRAGR
Sbjct: 336 DAIQRGSVEKHVLVSTDAIAYGLNMSIERIIFTSMKKFDGKQMVALPPATMVQVAGRAGR 395
Query: 561 RGSIYPDGL--TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF--------AGQ 610
G + L TTL+ D+ L + L P +V K GL P + +EL+ AG+
Sbjct: 396 FGVLRASALGRCTTLHADEFQALRDALGAPLPLVHKSGLLPTADILELYTEMVAREEAGK 455
Query: 611 LSN----YTFCQLLEKFGENCRLDGSYFLCRHDH-IKKVANMLEKVQGLSLEDRFNFCFA 665
S TF + ++ F C+L +F C + +VA L++V GLSL DR FC+
Sbjct: 456 TSGGDGRGTFYERVKDFSGQCQLSDIFFPCDLSRSLLQVAKELDRVPGLSLSDRILFCYV 515
Query: 666 PVNIRDPKAMYHLLR-FASSYSKNAPVSIAMGMPKGSAKNDAELLDLETK----HQVLS- 719
P+N RD K + LLR FA + PV + + G E L+ H++LS
Sbjct: 516 PLNDRD-KETFDLLRSFAQDHVDGGPVRLRIDEEFGKLSEQCEHLNSGVGDRRVHEMLSR 574
Query: 720 ---------MYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
MY WL+ +F F + + A+ +A + Q L
Sbjct: 575 MEGLYRHAEMYCWLAWRFG-STFTFLGEGLALKERLAAKMEQLL 617
>gi|259482438|tpe|CBF76922.1| TPA: mitochondrial ATP-dependent RNA helicase Suv3, putative
(AFU_orthologue; AFUA_5G10820) [Aspergillus nidulans
FGSC A4]
Length = 832
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 270/478 (56%), Gaps = 29/478 (6%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR ++R I H GPTNSGKTY+AL+R +K G Y PLRLLA EV+
Sbjct: 168 ADLRYPAEWYPQARAIQRTIHLHVGPTNSGKTYHALKRLESSKSGFYAGPLRLLAQEVYH 227
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC--TVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ + G+ SL+TG E +L + TVEMV+ + Y+V VIDEIQM++D RG+A
Sbjct: 228 RFKSSGIPVSLVTGDEVRLSEGEKAVVVSNTVEMVNLGQTYEVGVIDEIQMIADPRRGWA 287
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRALLG A E+HLCG+ V+ ++R++ + GD+L YER PL K+L GDL +
Sbjct: 288 WTRALLGAKATELHLCGETRVVPLIRQLAALAGDKLVIHRYERLNPLKAMNKSLKGDLTS 347
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GDC+V+FSR I +K IE+ T +IYG LP E R QQA+LFND +N++D LV
Sbjct: 348 LQKGDCIVSFSRVGIHALKADIERKTGRRAAIIYGGLPAEIRTQQASLFNDPNNDYDFLV 407
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGRAGRRGSIYPD----- 567
ASDA+GMGLNL+ RR++F ++ K +G K + VP ++KQI GRAGR S
Sbjct: 408 ASDAIGMGLNLSCRRIIFETVVKTLPSGLKRLTVP--EIKQIGGRAGRYRSAAQHGKDHQ 465
Query: 568 --------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL-SNYTFCQ 618
G T+L DL Y+ E L + G+ P E FA SN +
Sbjct: 466 QDNDNDNVGYVTSLEEVDLPYIQEALNTEPPPISAAGINPPDSVYEKFAAYFPSNASLAY 525
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
++++ E R++ +F+C + A +++ V GL D+ F AP+N R+
Sbjct: 526 MVKRLTEIARINNLFFMCDPSPNLENAEIIDAVPGLHFVDQLTFMAAPMNPREELGRRVA 585
Query: 679 LRFASSYSKNA--------PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ F ++ V++ + + + + N + LE H+ + +Y WLS++F
Sbjct: 586 MAFERCVLEHTNGRLLDIEEVNLEI-LEEPVSGNKEYMHKLEGLHRSVILYTWLSYRF 642
>gi|343425881|emb|CBQ69414.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 884
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/440 (41%), Positives = 250/440 (56%), Gaps = 28/440 (6%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL P +P AR + R I H GPTNSGKT+ AL +A+ GI+ PLRLLA EV+D+
Sbjct: 302 DLRFPVHQYPRARSLTRNIHLHVGPTNSGKTHGALVALSKARTGIFAGPLRLLAHEVWDR 361
Query: 338 VNALGV-------YCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
N+ V C+L+TG+EK+ V + ++CTVEMVST DV V+DEIQM+ DA
Sbjct: 362 FNSGTVSPEVAARACNLVTGEEKRTVDTLAGLVSCTVEMVSTQRAVDVGVVDEIQMIGDA 421
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RGYAWT A+LGL A E+HLCG+ SV+ ++ + + GD L YER PL V ++L
Sbjct: 422 QRGYAWTNAVLGLPAKELHLCGEASVIPLIEHMAAACGDHLTVHRYERLTPLSVADESLH 481
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
DL + GDC+VAFSR IF +K IE+ T C V YGALPPET+ +QA LFN +
Sbjct: 482 DDLTQIEKGDCIVAFSRSGIFALKRDIEQRTGLRCAVAYGALPPETKAEQAKLFN--AGK 539
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-- 567
DV+VASDA+GMGLNL I+RVVF +LSK+NG + + + SQ+KQIAGRAGR G+
Sbjct: 540 LDVMVASDAIGMGLNLRIKRVVFDTLSKWNGKEEVVLSASQIKQIAGRAGRYGTQDKSTK 599
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN--------Y 614
G+ TT + +LD L L P + + + P + + + L
Sbjct: 600 TADLGGVVTTRHEHELDILRAALASPLVPITRAAIQPSSDALSQLSAMLPGKDGKSSGLR 659
Query: 615 TFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQG--LSLEDRFNFCFAPVNIRD 671
T QL R+D +FL +++ ++E L++ +R F AP N RD
Sbjct: 660 TLSQLFGDVSLLSRIDSDHFFLSDFSQQLRISPLIESASSGMLTVGERETFSDAPANTRD 719
Query: 672 PKAMYHLLRFASSYSKNAPV 691
+ + L +S+ A V
Sbjct: 720 ERVVAFLCNGVRQFSRGALV 739
>gi|67537106|ref|XP_662327.1| hypothetical protein AN4723.2 [Aspergillus nidulans FGSC A4]
gi|40741575|gb|EAA60765.1| hypothetical protein AN4723.2 [Aspergillus nidulans FGSC A4]
Length = 785
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 184/478 (38%), Positives = 270/478 (56%), Gaps = 29/478 (6%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR ++R I H GPTNSGKTY+AL+R +K G Y PLRLLA EV+
Sbjct: 121 ADLRYPAEWYPQARAIQRTIHLHVGPTNSGKTYHALKRLESSKSGFYAGPLRLLAQEVYH 180
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC--TVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ + G+ SL+TG E +L + TVEMV+ + Y+V VIDEIQM++D RG+A
Sbjct: 181 RFKSSGIPVSLVTGDEVRLSEGEKAVVVSNTVEMVNLGQTYEVGVIDEIQMIADPRRGWA 240
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WTRALLG A E+HLCG+ V+ ++R++ + GD+L YER PL K+L GDL +
Sbjct: 241 WTRALLGAKATELHLCGETRVVPLIRQLAALAGDKLVIHRYERLNPLKAMNKSLKGDLTS 300
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GDC+V+FSR I +K IE+ T +IYG LP E R QQA+LFND +N++D LV
Sbjct: 301 LQKGDCIVSFSRVGIHALKADIERKTGRRAAIIYGGLPAEIRTQQASLFNDPNNDYDFLV 360
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKY--NGDKIIPVPGSQVKQIAGRAGRRGSIYPD----- 567
ASDA+GMGLNL+ RR++F ++ K +G K + VP ++KQI GRAGR S
Sbjct: 361 ASDAIGMGLNLSCRRIIFETVVKTLPSGLKRLTVP--EIKQIGGRAGRYRSAAQHGKDHQ 418
Query: 568 --------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL-SNYTFCQ 618
G T+L DL Y+ E L + G+ P E FA SN +
Sbjct: 419 QDNDNDNVGYVTSLEEVDLPYIQEALNTEPPPISAAGINPPDSVYEKFAAYFPSNASLAY 478
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
++++ E R++ +F+C + A +++ V GL D+ F AP+N R+
Sbjct: 479 MVKRLTEIARINNLFFMCDPSPNLENAEIIDAVPGLHFVDQLTFMAAPMNPREELGRRVA 538
Query: 679 LRFASSYSKNA--------PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ F ++ V++ + + + + N + LE H+ + +Y WLS++F
Sbjct: 539 MAFERCVLEHTNGRLLDIEEVNLEI-LEEPVSGNKEYMHKLEGLHRSVILYTWLSYRF 595
>gi|443894136|dbj|GAC71486.1| mitochondrial RNA helicase SUV3 [Pseudozyma antarctica T-34]
Length = 853
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 189/478 (39%), Positives = 267/478 (55%), Gaps = 39/478 (8%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL P +P AR + R I H GPTNSGKT+ AL +A+ G++ PLRLLA EV+D+
Sbjct: 273 DLRFPAHQYPHARTLMRSIHLHVGPTNSGKTHGALVALSKARTGVFAGPLRLLAHEVWDR 332
Query: 338 VNALGV-------YCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
N V C+L+TG+E++ V + ++CTVEMVS DV VIDEIQM+ DA
Sbjct: 333 FNTGTVSPGVAPRACNLVTGEEQRTVDALAGLVSCTVEMVSNSRTVDVGVIDEIQMIGDA 392
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT A+LGL A E+HLCG+ SV+ ++ K+ GD L YER PL V ++L
Sbjct: 393 QRGFAWTAAVLGLPAKELHLCGEASVIPLIEKLAEACGDHLTIHRYERLTPLSVADESLH 452
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
DL + GDC+VAFSR IF +K IE+ T C V YGALPPET+ +QA LFN + +
Sbjct: 453 NDLARIERGDCIVAFSRSGIFALKREIEQKTGLRCAVAYGALPPETKAEQAKLFN--EGK 510
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG----SIY 565
DV+VASDA+GMGLNL I+RVVF +L+K+NG + + + SQ+KQIAGRAGR G S
Sbjct: 511 LDVMVASDAIGMGLNLRIKRVVFDTLTKWNGSEEVTLSASQIKQIAGRAGRYGTQSASTK 570
Query: 566 P---DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY-------T 615
P G+ TT + +L+ L L P + + + P E + + L +
Sbjct: 571 PADLGGIVTTRHEHELEVLRAALASPLRPITRAAIQPPREALSQLSAMLPSAKPGGGLRA 630
Query: 616 FCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQG--LSLEDRFNFCFAPVNIRDP 672
QL R++ + YF+ ++ ++E L++ +R F AP N+RD
Sbjct: 631 LSQLYADVALLARIEAAHYFVADFSQQLAISPLVESASAGMLTVAERETFSNAPANMRDE 690
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+ + L + +S+ G+ + A DA L LE + Q++ L HQ E
Sbjct: 691 RVVAFLTSAVAQFSRG-------GLVRFDAAADA-LGMLEVEEQLVE----LMHQASE 736
>gi|322704688|gb|EFY96280.1| ATP-dependent RNA helicase SUV3 [Metarhizium anisopliae ARSEF 23]
Length = 645
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 267/478 (55%), Gaps = 28/478 (5%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D PH WFP R M+R I H GPTNSGKTYNAL+ +K G+Y PLRLLA EV+ +
Sbjct: 69 DFRFPHEWFPATRTMQRTIHVHVGPTNSGKTYNALKALENSKMGVYAGPLRLLATEVYQR 128
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+ A G C+L+TG+E ++ ++ +CTVEMV + +DVAVIDEIQM++D RG AW
Sbjct: 129 LTAKGRPCALITGEEVRIPEDTDQYFSSCTVEMVPLNTKFDVAVIDEIQMIADPERGNAW 188
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T A+LG+ A E+HLCG+ + +++ +C+ GD+ YER PL + GD N+
Sbjct: 189 TTAVLGVQAKEVHLCGEDRTVPLLQALCASIGDKCVVHRYERLSPLKTMDSAIKGDYSNL 248
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GD +VAFSR + +K +E T C +IYG+LPPE R QQA LFND +N++D +VA
Sbjct: 249 QKGDAIVAFSRLSLHVLKRNVETATGRRCAIIYGSLPPEVRVQQAALFNDPNNDYDFVVA 308
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-------- 567
SDA+GMGLNL IRRVV S++K++G++ + ++KQI GRAGR +
Sbjct: 309 SDAIGMGLNLEIRRVVLESITKFDGNQNRLLTYPEIKQIGGRAGRYRTAQSAVGVNAEEA 368
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLE 621
GL TT++ DL + ++ ++ + P VE FA T +L
Sbjct: 369 EKEKIGLVTTMDQADLRNVERAFQKKVNDIEYASIQPPAGIVERFASYFPPDTPLSFILM 428
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
+ + Y L + ++A++++ + L++ DR FC+ PV +R A+ L
Sbjct: 429 RIKAAATVGPRYRLNISSDVLEIADIIQDLP-LTIYDRLTFCYLPVALRAEGAVDVLRAL 487
Query: 682 ASSYSKNA----------PVS-IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
A + N+ P+ + + M S + L LE H ++ YLWLS+++
Sbjct: 488 ARVVANNSAGDLLSIKEIPLEFLEVKMEDYSGGSQEYLSKLEALHVAINQYLWLSYRY 545
>gi|302896154|ref|XP_003046957.1| hypothetical protein NECHADRAFT_46281 [Nectria haematococca mpVI
77-13-4]
gi|256727885|gb|EEU41244.1| hypothetical protein NECHADRAFT_46281 [Nectria haematococca mpVI
77-13-4]
Length = 764
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/508 (36%), Positives = 278/508 (54%), Gaps = 37/508 (7%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D P+ WFP R M+R I H GPTNSGKTY AL+ +K+G+Y PLRLLA EV+ +
Sbjct: 193 DFRFPYEWFPATRTMQRTIHLHVGPTNSGKTYRALKALENSKRGVYAGPLRLLANEVYQR 252
Query: 338 VNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+ A G+ C+L+TG+E ++ ++ +CTVEM+ +E YDVAVIDEIQM++D RG W
Sbjct: 253 LQAKGLPCALMTGEEVRIPQDTDTYFTSCTVEMIPVNEPYDVAVIDEIQMIADPDRGSGW 312
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T ALLG+MA E+HLCG+ + +++ IC+ GDE YER PL ++ + D +
Sbjct: 313 TTALLGVMAKEVHLCGEERTVKLIQSICAAIGDECIVHRYERLSPLETMSEAIDEDYNRL 372
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
GD +VAFSR + +K IEKHT C +IYG+LPPE R QQA LFND +N++D +VA
Sbjct: 373 EKGDAIVAFSRMNLHALKTTIEKHTGRRCAIIYGSLPPEVRVQQAALFNDPNNDYDFIVA 432
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR----RGSIYPD---- 567
SDA+GMGLNL IRRV+ S++KY+G++ + ++KQI GRAGR R + D
Sbjct: 433 SDAIGMGLNLEIRRVILDSVTKYDGNQNRHLTYPELKQIGGRAGRYRTARQATEADNGAD 492
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLE 621
G TT+ DL + + + + + P VE F+ T +L
Sbjct: 493 DGRKVGYVTTMARQDLKNVHRAFRSSVDDIDAAYVTPPAAAVERFSTYFPKDTPLSFILM 552
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
+ E + ++ L ++A+ ++ + L++ DR C PV R +M L
Sbjct: 553 RIRELASVSKNFRLGIAPDKLEIADAIQHIP-LTIYDRLTLCHLPVWQRAENSMDVLRAL 611
Query: 682 ASSYSKNA-------------PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
A S+N + I + KG+ + L LE+ H ++ Y+WLS++F
Sbjct: 612 AKIISENGRGDLLSIKEIPLESLDIDLKNFKGTPID--YLHKLESLHVAINQYVWLSYRF 669
Query: 729 KEEVFPYAKKAEAMATDIAELLGQSLTN 756
+ +A+A + L+ Q L +
Sbjct: 670 SGMF-----RDQALAFHVRSLVEQKLVD 692
>gi|146419707|ref|XP_001485814.1| hypothetical protein PGUG_01485 [Meyerozyma guilliermondii ATCC
6260]
Length = 566
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 194/510 (38%), Positives = 291/510 (57%), Gaps = 36/510 (7%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DL+ P +WFP AR MKRK++ H GPTNSGKTYN+LQ ++K G Y PLRLLA E+++
Sbjct: 51 VDLSSPASWFPEARKMKRKLVLHVGPTNSGKTYNSLQELAKSKSGYYAGPLRLLAREIYE 110
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHI-------ACTVEMVSTDEMYDVAVIDEIQMMSDA 389
+ N G+ C+L+TG+E +VP + + + T+EM+ + D VIDEIQM++D
Sbjct: 111 RFNQQGIRCNLITGEE--VVPSIDEVGKVSDISSGTIEMIPLHKPMDTCVIDEIQMIADD 168
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWT A+LG+ A IH+CG+ S + +++K+ + TGDEL + YER L V K L
Sbjct: 169 RRGSAWTGAVLGVQAKVIHMCGEQSAVPLIKKLANITGDELEIKTYERLGKLTVAQKE-L 227
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
L+ + GDCV+AFS+R+I E+K IEK T VIYGALPPE R ++AN FN +
Sbjct: 228 HLLKKLAKGDCVIAFSKRKILELKCEIEKMTKFRVGVIYGALPPEIRSKEANGFN--SGQ 285
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR--RGSIYPD 567
+D+LVASDAVGMGLNL I+RVVF++ +K+NG + +P+ S KQIAGRAGR G +
Sbjct: 286 YDILVASDAVGMGLNLKIKRVVFFTTTKFNGSETVPLTASATKQIAGRAGRFSAGKGQLE 345
Query: 568 GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFG-E 625
G T L DL ++ + + +P + + K ++P + L+ + T F ++L +F E
Sbjct: 346 GFVTALKAKDLRHVRKMMAEPNQDLVKACIWPTNKIWMLYMSKFPQGTSFYEILSQFAHE 405
Query: 626 NCRLDGS-YFLCRHDHIKKVANMLEK---VQGLSLEDRFNFCFAPVNIRDPKAMY--HLL 679
+ S +F+ D + + K + +ED+ AP+NIR +
Sbjct: 406 TADVKMSDFFVTELDERFDILKLFLKKDLFKKTMIEDQLTLSLAPINIRMASKLIVDTAF 465
Query: 680 RFASSYSKNAPVSI----------AMGMPKGS--AKNDAELLD-LETKHQVLSMYLWLSH 726
F + SK +I P+ S A+ E L LE H+++ ++LWLS
Sbjct: 466 DFFETISKCETKTIFDFHFLHTKLLEQEPRKSTTAEETVERLRLLEENHKLVLIFLWLSQ 525
Query: 727 QFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
++ +F + A + T I + + + L N
Sbjct: 526 RWP-TLFVDKESATDVKTLIEKRISEELIN 554
>gi|254566389|ref|XP_002490305.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Komagataella
pastoris GS115]
gi|238030101|emb|CAY68024.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Komagataella
pastoris GS115]
gi|328350701|emb|CCA37101.1| hypothetical protein PP7435_Chr1-0967 [Komagataella pastoris CBS
7435]
Length = 807
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 201/526 (38%), Positives = 286/526 (54%), Gaps = 73/526 (13%)
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
I++ + D+T P WFP AR MKRK I H GPTNSGKTYNAL R ++K G Y P
Sbjct: 244 IQKQNMTFNTIDITNPVEWFPEARKMKRKFIMHVGPTNSGKTYNALLRLEQSKTGYYAGP 303
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNH---IACTVEMVSTDEMYDVAV 379
LRLLA EV++K GV C+LLTG+E ++P F N + TVEMV T E++DV V
Sbjct: 304 LRLLAREVYEKFQKKGVRCNLLTGEE--VIPDYDDFGNQAGLTSGTVEMVPTTELFDVVV 361
Query: 380 IDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFK 439
+DEIQM+SD RG +WT ++G++A EIHLCG+ S + ++++I ETGDE+ Y R
Sbjct: 362 LDEIQMISDPDRGQSWTNVVIGVLAKEIHLCGEESSVPLIKRIIQETGDEIEVNKYNRLG 421
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499
LVV+ K + D+ ++R GDC+V+FS+ I K IE T C VIYGALPPE R ++
Sbjct: 422 QLVVDDKPI--DISDLRRGDCIVSFSKNMILNTKSHIEDVTKFKCGVIYGALPPEVRSRE 479
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A FN D E+D++VASDA+GMGLNLNI RVVF + KY+G I + SQ KQI GRAG
Sbjct: 480 AQKFN--DGEYDLIVASDAIGMGLNLNINRVVFTTSQKYDGRSNIILSDSQFKQIGGRAG 537
Query: 560 RRG-------SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE-QVELFAGQL 611
R G + P G + + D LD + + E +++ L+P E ++ ++
Sbjct: 538 RFGVKSSTDSNKPPIGHVSAFDADILDNIRSGINAKIEYLQRAMLWPTDELWIKYYSMFP 597
Query: 612 SNYTFCQLLEKFGENCR-LDGS---YFLCRHDHIKKVA-----NMLEK-VQG-LSLEDRF 660
T Q+LE+F E+ + L+ S F KK A N L+K +Q + D+
Sbjct: 598 RGTTLVQMLERFEEDLKTLNASSNGLFQVSPTEFKKEAGNFFCNQLDKNLQSHFLITDQI 657
Query: 661 NFCFAPVNI------------------------------RDPKAMYHLLRFASSYSKNAP 690
P+++ RD K++ +SK
Sbjct: 658 RMLNVPISLDTEQSMNAHQNYLTGIKVDAIRDYLETVINRDVKSILDTKVITMLFSK--- 714
Query: 691 VSIAMGMPKGSAKNDA--------ELLDLETKHQVLSMYLWLSHQF 728
V+ P+ K +A EL LET H+++++Y WLS+++
Sbjct: 715 VTCPSKPPEAKNKRNAGRGKPQYEELRSLETIHKLITVYTWLSYRY 760
>gi|388856167|emb|CCF50158.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial [Ustilago
hordei]
Length = 868
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 194/548 (35%), Positives = 282/548 (51%), Gaps = 87/548 (15%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL +P+ + AR + R I H GPTNSGKT+ AL +A+ GI+ PLRLLA EV+D+
Sbjct: 280 DLRRPYYQYTRARSLIRNIHLHVGPTNSGKTHGALVALSKARTGIFAGPLRLLAHEVWDR 339
Query: 338 VNALGV-------YCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
N+ V C+L+TG+E++ V P + ++CTVEMVST DV V+DEIQM++D
Sbjct: 340 FNSGTVSPGVPARACNLMTGEEQRTVDPLAGLVSCTVEMVSTMSSVDVGVVDEIQMIADP 399
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWT +LGL A E+HLCG+ SV+ ++ + GD L YER PL V ++L
Sbjct: 400 HRGSAWTNVVLGLPAKELHLCGEASVIPLIESLAKACGDHLTVHRYERLTPLSVAEESLD 459
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
DL + GDC+VAFSR IF +K IE+ T C V YGALPPET+ +QA LFN + +
Sbjct: 460 DDLGKIERGDCIVAFSRSAIFALKKDIERRTGLRCAVAYGALPPETKAEQAKLFN--EGK 517
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-- 567
DV+VASDA+GMGLNL I+RV+F +L+K+NG + I + SQ+KQIAGRAGR G+
Sbjct: 518 LDVMVASDAIGMGLNLGIKRVIFDTLTKWNGKEEITLSASQIKQIAGRAGRYGTQDKSTK 577
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY-------T 615
G+ TT + +L+ L L P + + + P + + L
Sbjct: 578 KADLGGVVTTRHEYELEILRSALASPLLPITRAAIQPTSGTLSSLSAMLPGAGGGEGLRM 637
Query: 616 FCQLLEKFGENCRLD-GSYFLCRHDHIKKVANMLEKVQG--LSLEDRFNFCFAPVNIRDP 672
Q+ R+D G++F+ ++ ++E L+LE+R F +P N RD
Sbjct: 638 LSQIFTDVALLSRIDSGNFFMSDFSQQSSISPLIESASSGLLTLEERATFSSSPANRRDE 697
Query: 673 KAMYHLLRFASSYSKNAPV----------------------------------------- 691
+ M L +S+ V
Sbjct: 698 RLMAFLSNIVRQFSRGGLVDFDTAAKDLGMLEVEDEVVTLMRQAIAAREQDAQPTKEGKE 757
Query: 692 ---------SIAMGMPKGSAK----NDAELLDLETKHQVLSMYLWLSHQF------KEEV 732
+++ + +GS+ N LL LE+ H+ ++YLWLS +F +++V
Sbjct: 758 ELPLIAYLNNVSGSLTQGSSAHPFINVTTLLMLESLHRCFTLYLWLSFRFPLAFCWRKDV 817
Query: 733 FPYAKKAE 740
KKAE
Sbjct: 818 NERKKKAE 825
>gi|409046629|gb|EKM56109.1| hypothetical protein PHACADRAFT_63855, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 532
Score = 319 bits (817), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 202/510 (39%), Positives = 279/510 (54%), Gaps = 72/510 (14%)
Query: 286 FPFAR-VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN----- 339
FP R +RKII H GPTNSGKTYNAL+ A+ GIY PLRLLA E+F+++N
Sbjct: 1 FPLTRQAPRRKIIMHVGPTNSGKTYNALRALAAAEYGIYAGPLRLLAHEIFERLNNGQIV 60
Query: 340 ALGV-----------------------------------YCSLLTGQEKKLVP-FSNHIA 363
LG C+LLTG+E++ V + ++
Sbjct: 61 PLGQDPDADAEPDEDINLDVAPNGEKPAVQKKGNKRYVRACNLLTGEEQRTVEEGAGLLS 120
Query: 364 CTVEMVSTDEM-YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
CTVEM M YDVAV+DEIQM++D RG AW+ ALL L A EIHLCG+ + + VV I
Sbjct: 121 CTVEMTPGGAMQYDVAVVDEIQMIADPERGPAWSSALLSLNAKEIHLCGEETAVPVVESI 180
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
+TGDEL Y+R PL V ++L GD R GDC +AFSR IFEVK IE+ T
Sbjct: 181 VRDTGDELEVNRYQRLSPLTVAQESLNGDFSKARKGDCFIAFSRSRIFEVKKEIERATKM 240
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
C V YG LPPE R +QA+LFN D +D++V +DA+GMGLNL I+R+VF + +K+NG +
Sbjct: 241 KCAVAYGRLPPELRTEQASLFNKPDTGYDIMVGTDAIGMGLNLKIKRIVFDTTTKWNGHE 300
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPD----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598
+ P+ S +KQIAGRAGR G ++ D G+ TTL +DL + + L+ + +K +
Sbjct: 301 MAPLSLSSIKQIAGRAGRFG-MHDDNDASGVATTLWENDLPVVADALRATAQPIKYARIH 359
Query: 599 PFFEQVELFAGQLSNYTFCQLLE-KFGENCRLDGSYFLCRHDHIKKVANMLEKVQ-GLSL 656
P E+ E L T E FG R+ S+ + I + ++++K GL+L
Sbjct: 360 PTQERFEQVVQVLPAGTPLSAAELVFGYVSRIHPSFEMQNVRDIAQAFDIVDKTAGGLTL 419
Query: 657 EDRFNFCFAPVNIRDPKAM---YHLLRFASSYSKNAPVSI-----AMGMPKGSAK-NDAE 707
DR AP+ RDP+ + HL+R Y+++ V A G+ K + DAE
Sbjct: 420 GDRHLLRLAPIQWRDPEMLEMTSHLIRI---YTQSLAVDYRQLLKATGVQKILKEIEDAE 476
Query: 708 ----------LLDLETKHQVLSMYLWLSHQ 727
L LE H+V+ +YLWLS++
Sbjct: 477 CMGNRPPAWGLSALELAHKVVIVYLWLSYR 506
>gi|302680394|ref|XP_003029879.1| hypothetical protein SCHCODRAFT_78341 [Schizophyllum commune H4-8]
gi|300103569|gb|EFI94976.1| hypothetical protein SCHCODRAFT_78341 [Schizophyllum commune H4-8]
Length = 625
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 203/571 (35%), Positives = 296/571 (51%), Gaps = 79/571 (13%)
Query: 265 DEIKRFRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D I + R + +A +P W FP AR +KRKII H GPTNSGKT+NAL+ AK GI
Sbjct: 9 DAIMQVRRL--TAATRRPFIWEEFPHARHLKRKIIMHVGPTNSGKTHNALRALAAAKLGI 66
Query: 323 YCSPLRLLAMEVFDKVNALGVY-------------------------------------- 344
Y PLRLLA E+++++N +
Sbjct: 67 YAGPLRLLAYEIWERLNLGQIVPAGMLEPPPRRPGQVAAEELADSALDFGTERPAARRDI 126
Query: 345 -------CSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
C+++TG+E K++ P++ + T+EM+S YDVAV+DEIQM++D RG AWT
Sbjct: 127 NPQYARQCNMVTGEEHKIIDPYARLSSVTIEMLSFQSSYDVAVVDEIQMIADDQRGCAWT 186
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
A+LGL A E+HLCG+ + + +V+++ ++TGDEL YER PL VE ++L GD +R
Sbjct: 187 NAVLGLAAKELHLCGEDTAIPLVQELIAQTGDELVINRYERLTPLEVEKESLKGDFSKIR 246
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GDCVV FSR++IF+VK IEK T C V+YG LPPE R +QA LFND D+ +DVLV S
Sbjct: 247 KGDCVVCFSRQKIFQVKEEIEKATGLRCAVVYGGLPPEVRSEQATLFNDPDSGYDVLVGS 306
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTL 573
DA+GMGLNL I RVVF + K++G K + + SQ KQIAGRAGR G P G TTL
Sbjct: 307 DAIGMGLNLKIGRVVFSTCQKHDGRKQVALSLSQTKQIAGRAGRYGLHGGDKPVGYVTTL 366
Query: 574 NLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGS 632
DD++++ + L + +++ GL E L + F L+ +
Sbjct: 367 REDDMEHVRQALAAENQPLQRAGLNARNELYSAVRAALPRGSKFDLWLDALQYTSTIPSR 426
Query: 633 YFLCRHDHIKKVANMLEKVQG---LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA 689
+ I+++ + ++G + L D F AP+ RD + R K+
Sbjct: 427 LRYTDQEQIRRLMADVIDMEGTDTMRLVDITTFVAAPIGWRDAEQATIARRLLMLREKHM 486
Query: 690 PVSIAMGM-------------------PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
V + + + +G A ++ L+ LE H++LS Y+WL ++
Sbjct: 487 RVDLQLLLRDTGLLITLTDVERRMKRGKQGGAAAESMLMQLERLHKILSAYVWLG--LRQ 544
Query: 731 EV-FPYAKKAEAMATDIAELLGQSLTNANWK 760
V F A +AE + + + L WK
Sbjct: 545 PVQFCSAGEAEQLKHRVEAAMEWVLHALTWK 575
>gi|344233399|gb|EGV65271.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 535
Score = 318 bits (815), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 187/509 (36%), Positives = 287/509 (56%), Gaps = 34/509 (6%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
S D + P W+P R MKRKI+ H GPTNSGKTY +L++ + G Y PLRLLA E++
Sbjct: 24 SIDFSNPAQWYPETRKMKRKIVMHVGPTNSGKTYQSLKKLEKCSSGYYAGPLRLLAREIY 83
Query: 336 DKVNALGVYCSLLTGQEKKLVP-------FSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
+ N G+ C+L+TG+E +V S + T+EMV + D+ +IDEIQM++D
Sbjct: 84 ENFNGRGINCNLVTGEE--VVARVDDDGKISQITSGTIEMVPLFKKMDLCIIDEIQMLAD 141
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG AWT ALLG+ A E+H+CG+ +D+VR+I + TGDE+ YER L V ++ +
Sbjct: 142 DMRGEAWTSALLGVQAKEVHVCGEERSVDLVRRIATLTGDEIEINRYERLGKLEVASQPV 201
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
G L ++ GDCV+AFS+R+I ++K+AIEK T VIYGALPPE R +QA+ FN
Sbjct: 202 RG-LERLKPGDCVIAFSKRKILQLKVAIEKSTKLKVAVIYGALPPEIRSEQAHGFN--SG 258
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR--RGSIYP 566
+FDVLVASDAVGMGLNL I+R+VF + K+NG + + S V+QI GRAGR
Sbjct: 259 KFDVLVASDAVGMGLNLAIKRIVFSTTQKFNGTSVASLTQSAVRQIGGRAGRFSHDKSKS 318
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
G+ T +N DL Y+ + + P E + K ++P E + + T + + K +N
Sbjct: 319 GGVITAMNKKDLAYIKKHMDGPVEDIPKACVWPTNEVWTSYISKFHPNTSMESILKDIDN 378
Query: 627 CRLDG-SYFLCRHDHIKKVANMLEK---VQGLSLEDRFNFCFAPV--NIRDPKAMYHLLR 680
++ ++FL + + +L +Q LS+ED+ APV NI P + L++
Sbjct: 379 GPINSDNFFLTNIESRMGIMELLSADGIMQQLSIEDQLKLSIAPVNLNINSPLVLGTLIK 438
Query: 681 FASSYSKNA----------PVSIAMGMP---KGSAKNDAELLDLETKHQVLSMYLWLSHQ 727
+ + + P+ I P A++ L LE H+++ +++WL+ +
Sbjct: 439 YIRNLVETKSMSILTVDFLPLEILRSKPLRLSPVAESLQVLTVLEDTHKLVLLFMWLAQR 498
Query: 728 FKEEVFPYAKKAEAMATDIAELLGQSLTN 756
+ +F + A + I + +G+ L+N
Sbjct: 499 W-PYLFVDVESAHDWKSLIEKRIGEELSN 526
>gi|241951316|ref|XP_002418380.1| ATP-dependent RNA helicase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223641719|emb|CAX43680.1| ATP-dependent RNA helicase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 722
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 190/514 (36%), Positives = 294/514 (57%), Gaps = 49/514 (9%)
Query: 249 KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
+ L IF+++ IE E + D + P WFP AR MKRKII H GPTNSGKT
Sbjct: 182 QLLHKIFLQYRIENASFEKAK-------VDFSNPAEWFPEARKMKRKIIMHVGPTNSGKT 234
Query: 309 YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNH 361
YN+L + ++K G Y PLRLLA E+++K N+ G+ C+L+TG+E +VP S
Sbjct: 235 YNSLIKLSKSKTGYYAGPLRLLAREIYEKFNSQGIGCNLITGEE--VVPSIDKYGKVSGI 292
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
+ T+EM+ + D+ VIDEIQM+SD RG WT A+LG++A EIHLCG+ S + ++K
Sbjct: 293 ASGTIEMIPLHKKMDLCVIDEIQMISDPLRGSVWTNAVLGVLAHEIHLCGEESAVPFIQK 352
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+ TGDEL + ++R L VE ++ +L ++ GDC+V FS+++I + K IE++T
Sbjct: 353 MVKITGDELEIKKFDRLGKLTVEKSSI--NLLQLKKGDCLVVFSKKKILKYKCDIERNTR 410
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
VIYGALPPE R Q+A+ FN + E+DVLVASDA+GMGLNL I R+VF ++K+NG
Sbjct: 411 LKVGVIYGALPPEIRSQEASKFN--NGEYDVLVASDAIGMGLNLKINRIVFSGVNKFNGS 468
Query: 542 KIIPVPGSQVKQIAGRAGRRGSIY--PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
+ + SQVKQIAGRAGR + + +G T L+ L Y+ +CLK P + K ++P
Sbjct: 469 TLQKLSVSQVKQIAGRAGRFSAQHGSKEGFVTALHRSSLVYINQCLKTPVSEILKASIWP 528
Query: 600 ---FFEQVELFAGQLSNYTFCQLLEKFGENCR--LDGSYFLCRHDHIKKVANMLEKVQGL 654
+ Q A + + E F N + ++F+ D ++ N++ K + L
Sbjct: 529 TNGIWRQY--MANNPKKNSLSSVYENFLTNVLKFQNDNFFISELDQKVQLLNLVSKDRFL 586
Query: 655 S---LEDRFNFCFAPVNIR---DPKAMYH-LLRFASSYSKNAPVSIA------MGMPKGS 701
S ++D+ P++ R +PK + + +++F + K SI + + +
Sbjct: 587 STMIIDDQLTISETPISFRTSNNPKLLQNTVIQFYKTIVKRDCKSILDFGFLDLELLSQT 646
Query: 702 AKNDAELL-------DLETKHQVLSMYLWLSHQF 728
+ D ++ LE H+++ ++LWLS +F
Sbjct: 647 SFVDTNVMVPLQKVEKLEDMHKLVLLFLWLSQRF 680
>gi|448513963|ref|XP_003867030.1| Suv3 protein [Candida orthopsilosis Co 90-125]
gi|380351368|emb|CCG21592.1| Suv3 protein [Candida orthopsilosis Co 90-125]
Length = 718
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 200/554 (36%), Positives = 303/554 (54%), Gaps = 78/554 (14%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L+ ++E+ IE P E ++MI D + P WFP AR MKRKII H GPTNSGKTY+
Sbjct: 185 LYKDYLEYKIETTPYE----KSMI---DFSNPAQWFPEARKMKRKIIMHVGPTNSGKTYH 237
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNHIA 363
+LQ+ + K G Y PLRLLA E++++ N G+ C+L+TG+E ++P S +
Sbjct: 238 SLQKLSKVKTGYYAGPLRLLAREIYERFNNQGIGCNLITGEE--VIPSIDEYGRVSGLAS 295
Query: 364 CTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKIC 423
T+EM+ + D+ VIDEIQM+ DA RG WT A+LG++A EIHLCG+ S + ++ K+
Sbjct: 296 GTIEMIPLHKKMDLCVIDEIQMIGDAQRGSVWTNAVLGVLAHEIHLCGEESAVPLIEKLV 355
Query: 424 SETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHH 483
TGDEL + ++R L +E K L+ ++ GDC+V FS+R+I E K +IE+ T
Sbjct: 356 KITGDELVVKKFDRLGKLTMEKKP--TSLKTLKKGDCLVVFSKRKILEYKCSIEQETKLK 413
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
+IYGALPPE R Q+A FN E+DVLVASDA+GMGLNL I R+VF ++K+NG ++
Sbjct: 414 VGMIYGALPPEIRAQEAVRFN--SGEYDVLVASDAIGMGLNLKINRIVFSGINKFNGSEV 471
Query: 544 IPVPGSQVKQIAGRAGRRGSIY--PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601
+ SQVKQIAGRAGR + + +GL T L L Y+ ECL+ P ++K L+P
Sbjct: 472 ENLTTSQVKQIAGRAGRFSAEHGSKEGLVTALQRSSLLYIKECLETPIVELEKACLWP-- 529
Query: 602 EQVELFAGQLSNYT----FCQLLEKFGENCRLDGS---YFLCRHDHIKKVANMLEK---V 651
++ ++NY+ + L F N L+ YFL + + ++ K +
Sbjct: 530 -TGLVWKYYMTNYSTESPLSETLSHFI-NSTLNFKSELYFLADLEVKTGILEIISKDKLL 587
Query: 652 QGLSLEDRFNFCFAPVNI----------------------RDPKAMY-------HLLRFA 682
+ ++++D+ PV+I RD K ++ HLL
Sbjct: 588 KNMTIDDQLTLSETPVSIHGPMNRELVIPTVKKFFKNIVERDCKTIFDFGFLDLHLLSAK 647
Query: 683 SSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
+KN +S+ + LE+ H++ ++LWLS +F +F K A +
Sbjct: 648 PLLNKNIKISL------------GNVEKLESMHKLTLLFLWLSQRFP-TLFIDKKSAMEL 694
Query: 743 ATDIAELLGQSLTN 756
+ + + + L N
Sbjct: 695 KALVEKRITEELNN 708
>gi|322702017|gb|EFY93765.1| ATP-dependent RNA helicase SUV3 precursor [Metarhizium acridum CQMa
102]
Length = 717
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/478 (37%), Positives = 266/478 (55%), Gaps = 28/478 (5%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D PH WFP R M+R I H GPTNSGKTYNAL+ +K G+Y PLRLLA EV+ +
Sbjct: 141 DFRFPHEWFPATRTMQRTIHVHVGPTNSGKTYNALKALENSKTGVYAGPLRLLATEVYQR 200
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+ A G C+L+TG+E ++ ++ +CTVEMV + +DVAVIDEIQM++D RG AW
Sbjct: 201 LTAKGRPCALITGEEIRIPEDTDQYFSSCTVEMVPLNTKFDVAVIDEIQMIADPERGNAW 260
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T A+LG+ A+E+HLCG+ + +++ +C+ GD+ YER PL + GD N+
Sbjct: 261 TTAVLGVQANEVHLCGEDRTVPLLQALCASIGDKCVVHRYERLSPLKTMDSAIKGDYSNL 320
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GD +VAFSR + +K IE T C +IYG+LPPE R QQA LFND +N++D +VA
Sbjct: 321 QKGDAIVAFSRLSLHVLKRNIETATGRRCAIIYGSLPPEVRVQQAALFNDPNNDYDFVVA 380
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-------- 567
SDA+GMGLNL IRRVV S++K++G++ + ++KQI GRAGR +
Sbjct: 381 SDAIGMGLNLEIRRVVLESITKFDGNQNRLLTYPEIKQIGGRAGRYRTAQSAVGVNAEEA 440
Query: 568 -----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLE 621
GL TT++ DL + + ++ ++ + P VE FA T +L
Sbjct: 441 EKEKVGLVTTMDQADLRNVEKAFQKKVNDIEYASIQPPAGIVERFASYFPPDTPLSFILM 500
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
+ + Y L ++A++++ + L++ DR FC+ PV +R A+ L
Sbjct: 501 RIKAAATVGPRYRLNVSSDALEIADIIQDLP-LTIYDRLTFCYLPVALRAEGAVDVLRAL 559
Query: 682 ASSYSKNA----------PVS-IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
A + N+ P+ + + M L LE H ++ Y+WLS+++
Sbjct: 560 ARVLANNSAGDLLSIKEIPLEFLEVKMEDYPGGPQEYLSKLEALHVAINQYIWLSYRY 617
>gi|320581988|gb|EFW96207.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Ogataea
parapolymorpha DL-1]
Length = 690
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 175/421 (41%), Positives = 249/421 (59%), Gaps = 15/421 (3%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAM-IESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTY 309
L P++ + E+ + + M + S +L P+ W+P AR +KRKII H GPTNSGKTY
Sbjct: 93 LRPLYAQQVYEDSSNSQNYNKNMTLNSLNLDNPYAWYPEARKLKRKIIMHVGPTNSGKTY 152
Query: 310 NALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP--FSNH---IAC 364
NAL+R + KG Y PLRLLA EVF+K G+ C+L+TG+E L + N +
Sbjct: 153 NALKRLETSSKGYYAGPLRLLAREVFEKFQNKGIRCNLMTGEEVLLDSDKYGNKAGLTSG 212
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
T+EM+ E +DV V+DEIQM+ D RG AWT +LG A EIHLCG+ S + +V K+ +
Sbjct: 213 TIEMIPMSEPFDVVVVDEIQMIGDPFRGSAWTNVILGARAKEIHLCGEVSAVPLVEKLVA 272
Query: 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHC 484
TGD++ +Y R L V+++ + L V+ GDC+VAFS+++I +K IE+ TN C
Sbjct: 273 MTGDDIEINNYNRLGKLAVDSEAI--SLDEVQRGDCIVAFSKKQILTIKAQIERDTNLKC 330
Query: 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKII 544
VIYGALPPETR Q+A +FN D E+DV+VASDA+GMGLNL I RVVF +L KY+G ++
Sbjct: 331 AVIYGALPPETRSQEARMFN--DGEYDVVVASDAIGMGLNLKINRVVFTTLEKYDGRRMT 388
Query: 545 PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQ- 603
+ S +KQI GRAGR G G T L DL+ + ++ P E + K L+P Q
Sbjct: 389 ALSNSSIKQIGGRAGRFGIGEGVGHITALTEADLNKIRVVMQAPIEYLDKAVLWPSDPQW 448
Query: 604 VELFAGQLSNYTFCQLLEKF----GENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDR 659
+ ++ N + KF ++ R + + R H+ +M + + LED
Sbjct: 449 MHYYSMFPKNTKLITMFRKFEADLDKSMRTNPKESIFRIQHMDDQMSMAKFINERHLEDD 508
Query: 660 F 660
F
Sbjct: 509 F 509
>gi|409077774|gb|EKM78139.1| hypothetical protein AGABI1DRAFT_76572, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 439
Score = 315 bits (807), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 227/341 (66%), Gaps = 17/341 (4%)
Query: 264 PDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
PD + R + A + +P FPF R ++RK+I H GPTNSGKT++AL+ AK G+Y
Sbjct: 81 PDVLATLRHLGTVA-VRRPAEEFPFTRRIQRKVIMHVGPTNSGKTHHALRALAAAKTGVY 139
Query: 324 CSPLRLLAMEVFDKVN---------ALGVYCSLLTGQEKKLVP-FSNHIACTVEMVSTDE 373
PLRLLA E+++++N +++TG+EKK+V ++ ++CTVEM+S+
Sbjct: 140 AGPLRLLAHEIWERLNLDSRPSTNSKYARATNMITGEEKKVVEHYAGLLSCTVEMLSSRM 199
Query: 374 MYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQ 433
YDV VIDEIQM+ D RG+AWT A+LGL A E+HLCG+ S + +V+ + ETGD+L +
Sbjct: 200 EYDVGVIDEIQMIGDPQRGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIR 259
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
YER PL+VE ++L GDL V+ GDCV+AFSR IF +K IEK + C V+YG LPP
Sbjct: 260 QYERLTPLLVEEESLGGDLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPP 319
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQV 551
E R +QA LFND D+ FDV++ SDA+GMGLNL IRR++F +++K +G IP+ SQ
Sbjct: 320 EIRSEQAALFNDPDSGFDVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKIPLSISQT 379
Query: 552 KQIAGRAGRRG-SIYPD---GLTTTLNLDDLDYLIECLKQP 588
KQIAGRAGR G SI P G TTL+ DL ++ + L P
Sbjct: 380 KQIAGRAGRYGHSIDPSNSCGYVTTLHPKDLPFVKDALSHP 420
>gi|255715361|ref|XP_002553962.1| KLTH0E11176p [Lachancea thermotolerans]
gi|238935344|emb|CAR23525.1| KLTH0E11176p [Lachancea thermotolerans CBS 6340]
Length = 744
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 185/486 (38%), Positives = 270/486 (55%), Gaps = 40/486 (8%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
E D++ P WFP AR +RKII H G TNSGKTY ALQR + +G Y PLRLLA EV
Sbjct: 209 EDVDISNPAEWFPEARKWRRKIIMHIGSTNSGKTYRALQRLKQCDRGYYAGPLRLLAREV 268
Query: 335 FDKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDA 389
+++ + C+LLTG+E ++L N + TVEMV + +DV V+DEIQMM D
Sbjct: 269 YERFKNEQIKCNLLTGEEVIEELDEMGNPAGLTSGTVEMVPLSQKFDVVVLDEIQMMGDP 328
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT ALLG +A E+HLCG+ S L +V+KI TGDEL YER L +E L
Sbjct: 329 DRGWAWTNALLGSIAREVHLCGEKSALPLVQKITKMTGDELIVNEYERLGELRIEENALK 388
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
L+ +R GDCVVAFS++ I ++K+ IEK T+ V+YG+LPPETR QQAN+FN E
Sbjct: 389 DGLKGLRKGDCVVAFSKKRILDLKLQIEKQTDLKVAVVYGSLPPETRIQQANMFN--SGE 446
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR--------- 560
+DVLVASDAVGMGLNL+I RV+F + K+NG +++ + S VKQI GRAGR
Sbjct: 447 YDVLVASDAVGMGLNLSIERVIFTTHMKFNGQEMMELTSSNVKQIGGRAGRFKVSRTPAN 506
Query: 561 ---RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY--- 614
G GL T ++ L + ++ P E ++ ++P E G+L +
Sbjct: 507 SVDGGKKASVGLVTGVDTKVLAAVKSGMEAPIEYLQSAVVWPTDE----ICGKLMTHFPP 562
Query: 615 --TFCQLLEKFGENCRLDGSYFLCRHDHIKKV--ANMLEKVQGLSLEDRFNFCFAPVNIR 670
+LL+ + + D ++ ++ E ++G+ ++ APV +
Sbjct: 563 GTQVSELLQTLAADVEKRSAKLFTLSDLKNRLNSISLFEHMEGIPFFEKLRLSNAPV--K 620
Query: 671 D-PKAMYHLLRFASSYSK-------NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYL 722
D P ++F + + + P S ++ P+ + L E+ H ++ +Y
Sbjct: 621 DFPTVKKAYVQFCRTIEQRQTKSLLSYPFSFSILDPRYINSDKYSLEHYESLHNIIMLYF 680
Query: 723 WLSHQF 728
WLS+++
Sbjct: 681 WLSNRY 686
>gi|426199143|gb|EKV49068.1| hypothetical protein AGABI2DRAFT_201173, partial [Agaricus bisporus
var. bisporus H97]
Length = 439
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/341 (47%), Positives = 227/341 (66%), Gaps = 17/341 (4%)
Query: 264 PDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
PD + R + A + +P FPF R ++RK+I H GPTNSGKT++AL+ AK G+Y
Sbjct: 81 PDVLATLRHLGTVA-VRRPAEEFPFTRRIQRKVIMHVGPTNSGKTHHALRALAAAKTGVY 139
Query: 324 CSPLRLLAMEVFDKVN---------ALGVYCSLLTGQEKKLVP-FSNHIACTVEMVSTDE 373
PLRLLA E+++++N +++TG+EKK+V ++ ++CT+EM+S+
Sbjct: 140 AGPLRLLAHEIWERLNLDSRPSTNSKYARATNMITGEEKKVVEHYAGLLSCTIEMLSSRM 199
Query: 374 MYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQ 433
YDV VIDEIQM+ D RG+AWT A+LGL A E+HLCG+ S + +V+ + ETGD+L +
Sbjct: 200 EYDVGVIDEIQMIGDPQRGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIR 259
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
YER PL+VE ++L GDL V+ GDCV+AFSR IF +K IEK + C V+YG LPP
Sbjct: 260 QYERLTPLLVEEESLGGDLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPP 319
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQV 551
E R +QA LFND D+ FDV++ SDA+GMGLNL IRR++F +++K +G +P+ SQ
Sbjct: 320 EIRSEQAALFNDPDSGFDVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKVPLSISQT 379
Query: 552 KQIAGRAGRRG-SIYPD---GLTTTLNLDDLDYLIECLKQP 588
KQIAGRAGR G SI P G TTL+ DL ++ + L P
Sbjct: 380 KQIAGRAGRYGHSIDPSNSCGYVTTLHPKDLPFVKDALSHP 420
>gi|400593909|gb|EJP61799.1| ATP-dependent RNA helicase SUV3 [Beauveria bassiana ARSEF 2860]
Length = 769
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/502 (36%), Positives = 276/502 (54%), Gaps = 45/502 (8%)
Query: 268 KRFRAMIESA-----DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
KRF +E + +L PH WFP R M+RKI H GPTNSGKTYNAL+ +K+G+
Sbjct: 185 KRFSKGVEESQANILNLRFPHEWFPATRSMQRKIHVHVGPTNSGKTYNALKALEASKRGV 244
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEMVSTDEMYDVAVI 380
Y PLRLLA EV+ ++ A + C+L+TG+E ++ ++ +CTVEMV + +DVAVI
Sbjct: 245 YAGPLRLLAAEVYHRLRAKNLPCALITGEEVRIPEDTDEYFSSCTVEMVPLNRKFDVAVI 304
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ + RG AWT A LG+ A E+H+CG+ + ++ +C+ GDE YER P
Sbjct: 305 DEIQMIGNEERGNAWTTAFLGVQAKEVHVCGEERTVSLIENLCATIGDECIVHRYERLSP 364
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L + L G + GD +VAFSR + +K +E+ T C +IYG LPPE R QQA
Sbjct: 365 LKTMSTALEGKYSRLEKGDAIVAFSRLSLHALKRQVEQETGRRCAIIYGTLPPEVRVQQA 424
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRA 558
LFND DN++D +VASDA+GMGLNL I+RV+F S+ K++G +++ VP + KQI GRA
Sbjct: 425 ALFNDPDNDYDYVVASDAIGMGLNLEIKRVIFESVHKFDGVQHRMLSVP--EFKQIGGRA 482
Query: 559 GR----------RGSI---YPD-----GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF 600
GR GS+ PD G T ++ D+ + + + E ++ + P
Sbjct: 483 GRYRSAQAAQVGEGSVADPAPDVEQKVGYVTAMDRQDVRSITKAFQHDVEDIQHAYIQPP 542
Query: 601 FEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDR 659
VE FA T +L + + Y L ++A++++ + LS+ DR
Sbjct: 543 PSVVERFASYFPPDTPLSFILTRIKAAANVSPLYRLNISSSALEIADIIQDLP-LSIYDR 601
Query: 660 FNFCFAPVNIRDPKAMYHLLRFASSYSKNA----------PVSIAMGMP--KGSAKNDAE 707
+ C P+++ ++ L A + N P+ + + +P + S K E
Sbjct: 602 QSICHMPISLSSEGSIAALRAMARVIAHNEAGELLSIKEIPLEV-LDLPFMQLSGKEATE 660
Query: 708 -LLDLETKHQVLSMYLWLSHQF 728
L LE+ H L+ Y+WLS++F
Sbjct: 661 YLYKLESLHMALNGYIWLSYRF 682
>gi|68486418|ref|XP_712944.1| hypothetical protein CaO19.4519 [Candida albicans SC5314]
gi|68486481|ref|XP_712911.1| hypothetical protein CaO19.11994 [Candida albicans SC5314]
gi|46434331|gb|EAK93744.1| hypothetical protein CaO19.11994 [Candida albicans SC5314]
gi|46434367|gb|EAK93779.1| hypothetical protein CaO19.4519 [Candida albicans SC5314]
Length = 720
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 189/518 (36%), Positives = 287/518 (55%), Gaps = 57/518 (11%)
Query: 249 KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
+ L IF+++ IE E + D + P WFP AR MKRKII H GPTNSGKT
Sbjct: 176 QLLHKIFLQYRIENASFEKPK-------VDFSNPAEWFPEARKMKRKIIMHVGPTNSGKT 228
Query: 309 YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNH 361
YN+L + ++K G Y PLRLLA E+++K N+ G+ C+L+TG+E +VP S
Sbjct: 229 YNSLIKLSKSKTGYYAGPLRLLAREIYEKFNSQGIGCNLITGEE--VVPSIDKYGKVSGI 286
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
+ T+EM+ + D+ VIDEIQM++D RG WT A+LG++A EIHLCG+ S + ++K
Sbjct: 287 ASGTIEMIPLHKKMDLCVIDEIQMIADPLRGSVWTNAVLGVLAHEIHLCGEESAVPFIQK 346
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+ TGDEL + + R L VE L+ ++ GDC+V FS+++I + K IE++T
Sbjct: 347 MVEITGDELEIKKFNRLGKLTVEKSN--TSLQQLKKGDCLVVFSKKKILKFKCDIERNTR 404
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
VIYGALPPE R Q+A+ FN + E+DVLVASDA+GMGLNL I R+VF ++K+NG
Sbjct: 405 LKVGVIYGALPPEIRSQEASKFN--NGEYDVLVASDAIGMGLNLKINRIVFSGVNKFNGS 462
Query: 542 KIIPVPGSQVKQIAGRAGRRGSIY--PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
+ + SQVKQIAGRAGR + + +G T L+ L Y+ +CLK P + K ++P
Sbjct: 463 TVEKLSVSQVKQIAGRAGRFSAQHGSKEGFVTALHRSSLVYIDQCLKTPVSEISKACIWP 522
Query: 600 FFE-QVELFAGQLSNYTFCQLLEKFGENCR--LDGSYFLCRHDHIKKVANMLEKVQGLS- 655
+ A + + E F N ++F+ D ++ N++ K + LS
Sbjct: 523 TSNIWRQYMANDPRKSSLSSVYENFLTNVLKFQSDNFFISELDQKVQLLNLVAKNRLLST 582
Query: 656 --LEDRFNFCFAPVNIR---DPKAMYH-LLRFASS-------------------YSKNAP 690
++D+ P+N R +PK + + +++F + S+N+
Sbjct: 583 MIIDDQLTISETPINFRTSVNPKLLKNTVIKFYETIVKRDCKSILDFDFLDLELLSQNSF 642
Query: 691 VSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
V + +P LE H+++ ++LWLS +F
Sbjct: 643 VGTDVMVPLQKVDK------LEDMHRLVLLFLWLSQRF 674
>gi|426200746|gb|EKV50670.1| hypothetical protein AGABI2DRAFT_200532 [Agaricus bisporus var.
bisporus H97]
Length = 525
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 227/348 (65%), Gaps = 17/348 (4%)
Query: 281 KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN- 339
+P FPF R ++RK+I H GPTNSGKT++AL+ AK G+Y PLRLLA E+++++N
Sbjct: 97 RPAEEFPFTRRIQRKVIMHVGPTNSGKTHHALRALAAAKTGVYAGPLRLLAHEIWERLNL 156
Query: 340 --------ALGVYCSLLTGQEKKLVP-FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
+++TG+EKK+V ++ ++CTVEM+S YDV VIDEIQM+ D
Sbjct: 157 DSRPSTNSKYARATNMITGEEKKVVEHYAGLLSCTVEMLSFRMEYDVGVIDEIQMIGDPQ 216
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT A+LGL A E+HLCG+ S + +V+ + ETGD+L + YER PL+VE ++L G
Sbjct: 217 RGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIRQYERLTPLLVEEESLGG 276
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
DL V+ GDCV+AFSR IF +K IEK + C V+YG LPPE R +QA LFND D+ F
Sbjct: 277 DLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPPEIRSEQAALFNDPDSGF 336
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRAGRRG-SIYPD 567
DV++ SDA+GMGLNL IRR++F +++K +G +P+ SQ KQIAGRAGR G SI P
Sbjct: 337 DVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKVPLSISQTKQIAGRAGRYGHSIDPS 396
Query: 568 ---GLTTTLNLDDLDYLIECLKQP-FEVVKKVGLFPFFEQVELFAGQL 611
G TTL+ DL ++ + L P + + P E +E F L
Sbjct: 397 NSCGYVTTLHPKDLPFVKDALSHPSTPTLSHAYVGPTVESMEAFCAAL 444
>gi|72387850|ref|XP_844349.1| RNA helicase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359316|gb|AAX79756.1| RNA helicase, putative [Trypanosoma brucei]
gi|70800882|gb|AAZ10790.1| RNA helicase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 626
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 186/516 (36%), Positives = 282/516 (54%), Gaps = 44/516 (8%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
+ +P W+P AR M+R+ I+H GPTNSGKT+ AL+ ++AK G+YC+P++ LA +V+ ++
Sbjct: 112 MGEPWDWYPKARFMRRRFIFHHGPTNSGKTHAALEELVKAKSGVYCAPIKALAAQVWKRI 171
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
NA V C LL G E++ + H++CTVEM D DV VIDE+QM+ D RG+AWTRA
Sbjct: 172 NA-SVPCDLLIGDERQFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIGDGDRGWAWTRA 230
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGD--ELHEQHYERFKPLVVEAKTLLGDLRNVR 456
+LGL A EIHLCG+ + ++R + +T + L ++R PL A L GDLR V
Sbjct: 231 ILGLPAREIHLCGEERAIPLIRSLLYKTRELKGLRLVPHQRLAPLRTSA-ALGGDLRQVE 289
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN--------DQDN 508
+GDC+V FSR+ IF +K +EK IYG++P R QA+ FN +D+
Sbjct: 290 NGDCLVCFSRKMIFAMKSQLEKLPGVAAHYIYGSMPFAVREAQADAFNRGVREAVEGKDS 349
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD- 567
+ VLV++DA+ GLN++I R++F S+ K++G ++ +P + Q+AGRAGR G + +
Sbjct: 350 KKHVLVSTDAIAYGLNMSIERIIFVSMKKFDGKQMTSLPQATTVQVAGRAGRFGVLRANT 409
Query: 568 -GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF------------AGQLSNY 614
G TTL+ DD L + +++ GL P + +EL+ +G +
Sbjct: 410 FGRCTTLHADDFPTLESAINARLSPLQRAGLLPTADILELYVTMNSDKKRLKTSGVVPQD 469
Query: 615 TFCQLLEKFGENCRLDGSYFLCRHDH-IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
F ++ F C+ +F C + +VA L+ V GLSL DR FC+ PVN R+ K
Sbjct: 470 VFYGHVKDFSSQCKTSDLFFPCDLSRSLLQVARELDAVPGLSLTDRILFCYVPVNTRN-K 528
Query: 674 AMYHLLR-FASSYSKNAPVSIAMG----MPKGSAKNDAELLDLETKHQVLS--------- 719
+ LLR FA ++ PV + + G + D E H++LS
Sbjct: 529 DTFDLLRCFARDHATGGPVRLRIDEEFEQLVGQCAHLKTHKDSERAHRILSRMEDLYRHA 588
Query: 720 -MYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
MY WLS +F F Y + A+ I + + L
Sbjct: 589 EMYCWLSWRFG-NTFIYLEAGSALKERIVAKMDELL 623
>gi|150865139|ref|XP_001384238.2| mitochondrial RNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149386395|gb|ABN66209.2| mitochondrial RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 640
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 183/508 (36%), Positives = 282/508 (55%), Gaps = 34/508 (6%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL+ P WFP AR MKRKI+ H GPTNSGKTYN+L++ EAK G Y PLRLLA E+++K
Sbjct: 132 DLSNPAQWFPEARKMKRKIVMHVGPTNSGKTYNSLKKLAEAKTGYYAGPLRLLAREIYEK 191
Query: 338 VNALGVYCSLLTGQE-----KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
+ V C+L+TG+E K S + T+EM+ + DV VIDEIQM++D RG
Sbjct: 192 FLSTNVRCNLITGEEIIPCMDKFGKVSGISSGTIEMIPLHKKMDVCVIDEIQMIADPGRG 251
Query: 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL 452
WT ALLG++A EIHLCG+ S + +++K+ TGDE+ + Y+R L V K +
Sbjct: 252 SIWTNALLGVLAKEIHLCGEESAVPLIKKLAKMTGDEVEVKQYKRLGELKVTDKAI--SY 309
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
+ GDC+VAFS+ +I ++K IE+ TN V+YGALPPE R +Q+ FN EFD+
Sbjct: 310 NKLEKGDCLVAFSKHKILQLKCEIERRTNLSVGVVYGALPPEIRSEQSRKFN--SGEFDI 367
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY--PDGLT 570
LVASDAVGMGLNL I+R++F ++ K++G ++ + S VKQIAGRAGR + G
Sbjct: 368 LVASDAVGMGLNLKIKRIIFQTVRKFDGKEMTNLTVSSVKQIAGRAGRYSETHGMQTGYV 427
Query: 571 TTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN----YTFCQLLEKFGEN 626
+ L DL Y+ + + P ++K ++P F+ + + + S Y E+ ++
Sbjct: 428 SALTSRDLMYIKQAMNAPIRELEKAAIWPTFDIWKQYMAKFSKDESLYDSLLQFERETKD 487
Query: 627 CRLDGSYFLCRHDHIKKVANMLEK--VQGLSLEDRFNFCFAPVNIR--DPKAMYHLLRFA 682
R++ Y D + + L + + + ++D+ P+N+ P+ ++
Sbjct: 488 KRMEHYYVATVDDKAELMKLFLRENLYKKVPIDDQLILSLCPINLNMSSPEVTEMTFKYI 547
Query: 683 SSYSKNAPVSI----------AMGMPKGSA----KNDAELLDLETKHQVLSMYLWLSHQF 728
+ + +I P ++ K+ A L LE H+V+ M+LWLS +F
Sbjct: 548 KNVHQRTTKTIFDFGFIDHKLLTTSPNIASVHFDKSAALLRLLEDHHKVVLMFLWLSQRF 607
Query: 729 KEEVFPYAKKAEAMATDIAELLGQSLTN 756
+F + A + T I + + Q L++
Sbjct: 608 -PTLFVDKESATELKTLIEKRIQQELSH 634
>gi|238882216|gb|EEQ45854.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 720
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 191/523 (36%), Positives = 284/523 (54%), Gaps = 67/523 (12%)
Query: 249 KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
+ L IF+++ IE E + D + P WFP AR MKRKII H GPTNSGKT
Sbjct: 176 QLLHKIFLQYRIENASFEKPK-------VDFSNPAEWFPEARKMKRKIIMHVGPTNSGKT 228
Query: 309 YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNH 361
YN+L + ++K G Y PLRLLA E+++K N+ G+ C+L+TG+E +VP S
Sbjct: 229 YNSLIKLSKSKTGYYAGPLRLLAREIYEKFNSQGIGCNLITGEE--VVPSIDKYGKVSGI 286
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
+ T+EM+ + D+ +IDEIQM++D RG WT A+LG++A EIHLCG+ S + ++K
Sbjct: 287 ASGTIEMIPLHKKMDLCIIDEIQMIADPLRGSVWTNAVLGVLAHEIHLCGEESAVPFIQK 346
Query: 422 ICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+ TGDEL + + R L VE L+ ++ GDC+V FS+++I + K IE++T
Sbjct: 347 MVEITGDELEIKKFNRLGKLTVEKSN--TSLQQLKKGDCLVVFSKKKILKFKCDIERNTR 404
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
VIYGALPPE R Q+A+ FN + E+DVLVASDA+GMGLNL I R+VF ++K+NG
Sbjct: 405 LKVGVIYGALPPEIRSQEASKFN--NGEYDVLVASDAIGMGLNLKINRIVFSGVNKFNGS 462
Query: 542 KIIPVPGSQVKQIAGRAGRRGSIY--PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
+ + SQVKQIAGRAGR + + +G T L+ L Y+ +CLK P + K ++P
Sbjct: 463 TVEKLSVSQVKQIAGRAGRFSAQHGSKEGFVTALHRSSLVYIDQCLKTPVSEISKACIWP 522
Query: 600 FFE-QVELFAGQLSNYTFCQLLEKFGENCR--LDGSYFLCRHDHIKKVANMLEKVQGLS- 655
+ A + + E F N ++F+ D ++ N++ K + LS
Sbjct: 523 TSNIWRQYMANDPRKSSLSSVYENFLTNVLKFQSDNFFISELDQKVQLLNLVAKNRLLST 582
Query: 656 --LEDRFNFCFAPVNIR---DPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKN------ 704
++D+ P+N R +PK + KN + + K K+
Sbjct: 583 MIIDDQLTISETPINFRTSVNPKLL-----------KNTVIEFYETIVKRDCKSILDFDF 631
Query: 705 -DAELLD------------------LETKHQVLSMYLWLSHQF 728
D ELL LE H+++ ++LWLS +F
Sbjct: 632 LDLELLSQNSFVGTDVMVPLQKVDKLEDMHRLVLLFLWLSQRF 674
>gi|403213420|emb|CCK67922.1| hypothetical protein KNAG_0A02330 [Kazachstania naganishii CBS
8797]
Length = 741
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 271/479 (56%), Gaps = 25/479 (5%)
Query: 274 IESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAME 333
I S D++ P WFP AR M+R I+ H GPTNSGKTY AL++ + +KG Y PLRLLA E
Sbjct: 211 ITSIDISNPTKWFPEARKMRRHIVMHLGPTNSGKTYRALKQLQQVEKGYYGGPLRLLARE 270
Query: 334 VFDKVNALGVYCSLLTGQE-----KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
V+D+ + G+ C+LLTG+E ++ + + T+EM+ + +DV V+DEIQMM+D
Sbjct: 271 VYDRFKSQGIRCNLLTGEEIVDDLDQMGNRAGLTSGTIEMIPLNRDFDVVVLDEIQMMAD 330
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWT ALLG+ E+H+CG+PS L+++RK+C + YER L VE++ +
Sbjct: 331 EERGWAWTNALLGVRGKEVHVCGEPSTLELIRKVC-QLXXXXXXNKYERLGDLTVESQPI 389
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
LG + +R GDC+VAFS+++I ++K+ IE+ T VIYG+LPPETR QQA+LFN
Sbjct: 390 LGQMSKLRKGDCLVAFSKKKILDLKLKIERETGFSVAVIYGSLPPETRVQQADLFN--SG 447
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-------R 561
++D+LVASDA+GMGLNL+I RV+F + K+NG ++IP+ S ++QI GRAGR
Sbjct: 448 KYDILVASDAIGMGLNLSIDRVIFTTDKKFNGSEMIPLTNSNIRQIGGRAGRFKEQSSTG 507
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQ-VELFAGQLSNYTFCQLL 620
G+ G T L + E ++ P E ++ ++P E +L N LL
Sbjct: 508 GNSRSQGHITGWTHAVLKSVREGIESPVEPLQNAIIWPTDEICTQLMVRYPPNTKLGYLL 567
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVAN--MLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
E+F D K+A + E + +S D+ APV P
Sbjct: 568 EQFAARLAKSRDQVFKLSDLGDKLATIALFEHIPDISFPDKLRLSTAPVKRLLPLVKAAF 627
Query: 679 LRFASSYSKNAPVS-IAMGMP------KGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
++F + ++ ++ P KG DA L E + +++Y WL++++ +
Sbjct: 628 IQFCETIAQRRTRGLLSYDFPFHLLDYKGITDEDATLEQYEALYHTITLYFWLANRYTQ 686
>gi|312069312|ref|XP_003137623.1| hypothetical protein LOAG_02037 [Loa loa]
Length = 683
Score = 311 bits (798), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 176/416 (42%), Positives = 241/416 (57%), Gaps = 26/416 (6%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDA--VKFLFPIFVEFCIEEFPDEI 267
+ + F A FR+Y + P D +V + A V L+P F+E +P +
Sbjct: 167 VNRKMFHAAYKSFRNYCLHASPLDPCIAVVISDILNKARDVDSLYPYFIEHAKRVYP-HL 225
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
+ + + +DLTKP+ W+P AR + R+I +H GPTNSGKTY ALQ+F AK G YC PL
Sbjct: 226 ECEKELKTLSDLTKPYNWYPKARELFRRIHFHAGPTNSGKTYEALQQFYRAKTGFYCCPL 285
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDEI 383
RLLA EV K N G+ C ++TG+E++ S+H+A TVEMV D +VAVIDEI
Sbjct: 286 RLLANEVCQKTNEQGIKCDMVTGEERRYAVDADSPSSHVAMTVEMVPVDVNVEVAVIDEI 345
Query: 384 QMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVV 443
QM+ D RG+AWTRALLG+ A+EIHLCG+ + +D+VR + G+ + YER PL V
Sbjct: 346 QMLRDQSRGWAWTRALLGIAAEEIHLCGEEAAVDIVRGLLDPIGEHVEVHRYERKTPLTV 405
Query: 444 EAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLF 503
K L L NV+ GDC+V FS +F V + K VIYGALPP T+ QA F
Sbjct: 406 N-KEALKKLDNVKDGDCLVCFSVSMLFSVAKTLMK-LGVQPTVIYGALPPWTKLNQAKTF 463
Query: 504 NDQDNEFDVLVASDAVGMGLNLNIRRVVF--YSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561
N+ + +V+VA+DAVGMGLNLNIRR++F + ++ + V Q+AGRAGR
Sbjct: 464 NEMSRKPNVMVATDAVGMGLNLNIRRIIFVQFPFGEHQAN-------YHVMQVAGRAGRF 516
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
S Y G TTL D+ L +K+P + ++ G+ P EQV+ Y FC
Sbjct: 517 QSAYQKGWVTTLRPADMPLLEAFMKEPIKPIETAGIAPTSEQVK--------YAFC 564
>gi|172798|gb|AAA35135.1| SUV3 [Saccharomyces cerevisiae]
Length = 737
Score = 311 bits (797), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 190/475 (40%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+++I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ LD+ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLDVYESLYNIITLYFWLSNRY 683
>gi|341880409|gb|EGT36344.1| hypothetical protein CAEBREN_06112 [Caenorhabditis brenneri]
Length = 658
Score = 311 bits (797), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 183/536 (34%), Positives = 280/536 (52%), Gaps = 80/536 (14%)
Query: 210 IGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWL----GPSDDAVKFLFPIFVEFCIEEFP- 264
I F A FR Y K V L+ L D + L+P F++ + FP
Sbjct: 99 INDKLFMRAFKSFREYCTPKDLSSVDAALLILLSDISKGDKDCEMLYPFFLDHSKQVFPH 158
Query: 265 -DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
+ + R + +DLT+PH W+P AR + RKI +H GPTNSGKTY+AL+RF EAK ++
Sbjct: 159 LEAMDDLRII---SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKSAVF 215
Query: 324 CSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAV 379
C PL+LLA EVF++ N LG+ C L+TG+E++ S H++ TVEM+ST +V V
Sbjct: 216 CGPLKLLAAEVFNRTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVV 275
Query: 380 IDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFK 439
IDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +D+V+K+ G+ + ++YER
Sbjct: 276 IDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKS 335
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499
PL + K + N+ GDC+V FS+R +F +E++ VIYG LPP T+ Q
Sbjct: 336 PLAIGDKAI-ESYSNIEPGDCIVCFSKRAVFFNSKKLEEN-GIKPAVIYGDLPPGTKLAQ 393
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
A FND D+E +VLVA+DA+
Sbjct: 394 AAKFNDPDDECNVLVATDAI---------------------------------------- 413
Query: 560 RRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
G+ LN+ +D ++ VG+ P ++Q+E F+ L +F +L
Sbjct: 414 --------GMGLNLNIKRVDPIM-----------NVGIAPTYDQIETFSFHLPQASFVRL 454
Query: 620 LEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLL 679
L+ F C + +F+C ++++A ++++V L L+ R+ FC +P+N D + +
Sbjct: 455 LDLFVSVCSVSDHFFICTVYDMRELAVLIDQVP-LPLKVRYTFCTSPLNTDDKRTAAVFV 513
Query: 680 RFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+ A +S ++ + P A N EL LE +++L Y+WLS +F +
Sbjct: 514 KMARRFSTGQALTYDWLIDMLEWPPKPATNLNELALLEQNYEILDQYMWLSMRFPD 569
>gi|261327511|emb|CBH10486.1| RNA helicase, putative [Trypanosoma brucei gambiense DAL972]
Length = 626
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/516 (35%), Positives = 281/516 (54%), Gaps = 44/516 (8%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
+ +P W+P AR M+R+ I+H GPTNSGKT+ AL+ ++AK G+YC+P++ LA +V+ ++
Sbjct: 112 MGEPWDWYPKARFMRRRFIFHHGPTNSGKTHAALEELVKAKSGVYCAPIKALAAQVWKRI 171
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
NA V C LL G E++ + H++CTVEM D DV VIDE+QM+ D RG+AWTRA
Sbjct: 172 NA-SVPCDLLIGDERQFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIGDGDRGWAWTRA 230
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGD--ELHEQHYERFKPLVVEAKTLLGDLRNVR 456
+LGL A EIHLCG+ + ++R + +T + L ++R PL A L GDLR V
Sbjct: 231 ILGLPAREIHLCGEERAIPLIRSLLYKTRELKGLRLVPHQRLAPLRTSA-ALGGDLRQVE 289
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN--------DQDN 508
+GDC+V FSR+ IF +K +EK IYG++P R QA+ FN +D+
Sbjct: 290 NGDCLVCFSRKMIFAMKSQLEKLPGVAAHYIYGSMPFAVREAQADAFNRGVREAVEGKDS 349
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD- 567
+ VLV++DA+ GLN++I R++F S+ K++G ++ +P + Q+AGRAGR G + +
Sbjct: 350 KKHVLVSTDAIAYGLNMSIERIIFVSMKKFDGKQMTSLPQATTVQVAGRAGRFGVLRANT 409
Query: 568 -GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF------------AGQLSNY 614
G TTL+ DD L + +++ GL P + +EL+ +G +
Sbjct: 410 FGRCTTLHADDFPTLESAINARLSPLQRAGLLPTADILELYVTMNSDKKRLKTSGVVPQD 469
Query: 615 TFCQLLEKFGENCRLDGSYFLCRHDH-IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
F ++ F C+ +F C + +VA L+ V GLSL DR FC+ PVN R+ K
Sbjct: 470 VFYGHVKDFSSQCKTSDLFFPCDLSRSLLQVARELDAVTGLSLTDRILFCYVPVNTRN-K 528
Query: 674 AMYHLLR-FASSYSKNAPVSIA--------------MGMPKGSAKNDAELLDLETKHQVL 718
+ LLR FA ++ PV + + K S + L +E ++
Sbjct: 529 DTFDLLRCFARDHATGGPVRLRIDEEFEQLVGQCAHLKTHKDSVRAHRILSRMEDLYRHA 588
Query: 719 SMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
MY WLS +F F Y + A+ I + + L
Sbjct: 589 EMYCWLSWRFG-NTFIYLEAGSALKERIVAKMDELL 623
>gi|443924800|gb|ELU43759.1| ATP-dependent RNA helicase suv3 [Rhizoctonia solani AG-1 IA]
Length = 608
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/343 (46%), Positives = 208/343 (60%), Gaps = 48/343 (13%)
Query: 270 FRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRL 329
A+ ++ DL W+P AR M+RKII H GPTNSGKTYNALQ A+ G+Y PLRL
Sbjct: 192 LEALRQATDLRHMIEWYPLARSMRRKIIMHVGPTNSGKTYNALQALAGAESGVYAGPLRL 251
Query: 330 LAMEVFDKVNA-----------------------------------------------LG 342
LA EV+ ++N G
Sbjct: 252 LAHEVWTRINRGSIAPKSETVDLDDAAPSMVVTESQDPDSGAVPIPVPAPPPAPPKVYAG 311
Query: 343 VYCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
C+L+TG+++++V P + ++CTVEM+ ++ V VIDEIQM++D RG AWT A+LG
Sbjct: 312 RPCNLITGEDQRIVSPNATTVSCTVEMIPKHLVWSVGVIDEIQMLADPQRGGAWTSAVLG 371
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L A E+HLCG+ +V+D+VR++C TGDEL YER PL V +L G L+NV GDCV
Sbjct: 372 LAAKELHLCGEDTVVDLVRELCRMTGDELIVNRYERLTPLEVAPYSLEGKLKNVERGDCV 431
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
V FSR +IF K IEK T C V+YG LPPE R +QA LFND+++ +DV+VASD+VGM
Sbjct: 432 VTFSRNDIFMTKRKIEKETGLRCAVVYGRLPPEVRSEQAQLFNDEESGYDVIVASDSVGM 491
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564
GLNL I+RVVF K+NG + +P+ +KQIAGRAGR G I
Sbjct: 492 GLNLKIKRVVFLKTDKWNGKQDVPLSVPLIKQIAGRAGRFGLI 534
>gi|407850937|gb|EKG05094.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 623
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 187/510 (36%), Positives = 287/510 (56%), Gaps = 42/510 (8%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R E + +P W+P AR M+R+ ++H GPTNSGKT+ AL+ ++AK G+YC+PL+ L
Sbjct: 103 RKAPEKVTMHEPWDWYPKARFMRRRFVFHYGPTNSGKTHAALETLVKAKSGVYCAPLKAL 162
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
A +V+ +++A V C LL G E++ + H++CTVEM D DV VIDE+QM++D
Sbjct: 163 AAQVWKRIDA-SVPCDLLIGDERRFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIADRD 221
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD--ELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A EIHLCG+ + ++RK+ +T + L + R PL V + +L
Sbjct: 222 RGWAWTRALLGLPAREIHLCGEERAIPLIRKVLYKTHELQRLEVVPHRRLVPLEV-SPSL 280
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND--- 505
GDLR + +GD +V FSRR IF++K +E + IYG++P R QA+ FN+
Sbjct: 281 DGDLRRIENGDTLVCFSRRAIFDMKKKLESISGMAPHCIYGSMPFSVREAQADAFNNGTR 340
Query: 506 -----QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ + VL+++DA+ GLN++I R++F S+ K++G +++ +P + + Q+AGRAGR
Sbjct: 341 DVIEGKSGKKHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQMVTLPQATILQVAGRAGR 400
Query: 561 RGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF-----AGQLSN 613
G + + G TTL+L+D L E + ++K GL P E +EL+ A + S
Sbjct: 401 FGVLRTHKFGRCTTLDLNDFAVLREAVNSRLPSLQKAGLLPTAEVLELYIRLREAEEGSR 460
Query: 614 YT------FCQLLEKFGENCRLDGSYFLCRHDH-IKKVANMLEKVQGLSLEDRFNFCFAP 666
T F Q + +F E C+ +F C + +VA LE V LSL DR FC+ P
Sbjct: 461 VTENNLSSFYQRMREFSECCQASDLFFPCDLSRSLLQVAKELEAVTDLSLSDRILFCYVP 520
Query: 667 VNIRDPKAMYHLLR-FASSYSKNAPVSIAMGMPKGSAKNDAELL---DLETKHQVLS--- 719
+N R K Y LLR F ++ V + + +L+ D HQVL+
Sbjct: 521 LNDRG-KETYDLLRAFGHDHAAGRHVVLRIDEEFERLVKQCDLVCSGDTRRAHQVLTRME 579
Query: 720 -------MYLWLSHQFKEEVFPYAKKAEAM 742
MY WL+ +F + F + + A A+
Sbjct: 580 HLYRAAEMYCWLAWRFG-KTFVHLETATAL 608
>gi|389741138|gb|EIM82327.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 781
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 199/546 (36%), Positives = 276/546 (50%), Gaps = 86/546 (15%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D T FP ARVM+RKII H GPTNSGKTY AL+ A G Y PLRLLA E++
Sbjct: 192 AVDFTTVADSFPEARVMRRKIIMHVGPTNSGKTYRALRALAAAPVGAYAGPLRLLAHEIY 251
Query: 336 DKVNALGVY-----------------------------------------CSLLTGQEKK 354
+++N + CS++TG++ K
Sbjct: 252 ERLNTGQIVPAGIDPEAQPELADDTSNLDIPAGETKPAIRKVGDPRYIRPCSMITGEDVK 311
Query: 355 LVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
L+P +N ACT+EM++T + YDV VIDEIQM++D+ RG++WT A+LG A E+HLCG+ +
Sbjct: 312 LIPNANLYACTIEMIATSKRYDVVVIDEIQMITDSERGHSWTAAVLGTAASELHLCGEDT 371
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
+ ++ + TGDEL YER PL V K+L GDL V GDC+V FSR +IF++K
Sbjct: 372 AVPIIEALAKMTGDELIVNRYERLSPLEVAEKSLEGDLTKVTKGDCIVTFSRSKIFQLKD 431
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
A+EK T C V YG LPPE R +QA FND D+E VL+ SDA+GMGLNL IRRV+ S
Sbjct: 432 AVEKKTGLKCAVAYGRLPPEMRNEQARQFNDPDSEIGVLIGSDAIGMGLNLKIRRVIISS 491
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK- 593
++K++G+K + SQ KQIAGRAGR G + G+ TTL+ DL L E + P ++
Sbjct: 492 MAKFDGEKETRLSTSQTKQIAGRAGRFG-MEASGIATTLHPADLPLLREAINAPSVPLRY 550
Query: 594 -KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC--RHDHIKKVANMLEK 650
+VG V +F G ++ L E C D K N++E
Sbjct: 551 ARVGWL-----VGVFEGVMAALPPGTTLSTAREALIYASVVPTCFEMMDANDKSTNLVEF 605
Query: 651 V----QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI------------- 693
V + L + +R P +D L ++Y A V +
Sbjct: 606 VDSIAKDLPISERQMLSLCPFPFQDAVTRDILGSIYATYRDQAKVDLRRLLETDPHAQRI 665
Query: 694 ---------AMGMPKGSAKND--------AELLDLETKHQVLSMYLWLSHQFKEEVFPYA 736
AM P+G K + L++LE+ H+VL Y WL H + F
Sbjct: 666 LALLNQVLEAMEDPEGKIKEEITMKTGWQQHLIELESLHKVLVAYSWL-HMHRSLAFFSN 724
Query: 737 KKAEAM 742
+AE +
Sbjct: 725 HQAEQL 730
>gi|354546901|emb|CCE43633.1| hypothetical protein CPAR2_212770 [Candida parapsilosis]
Length = 716
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 191/528 (36%), Positives = 294/528 (55%), Gaps = 81/528 (15%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L+ ++E+ I+ P E +++I D + P WFP AR MKRKI+ H GPTNSGKT++
Sbjct: 183 LYKDYLEYKIQTTPYE----KSLI---DFSNPAQWFPEARKMKRKIVMHVGPTNSGKTHH 235
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNHIA 363
+LQ+ + G Y PLRLLA E++++ N G+ C+L+TG+E ++P S +
Sbjct: 236 SLQKLSTVRTGYYAGPLRLLAREIYERFNDQGIGCNLITGEE--VIPSIDEYGRVSGLAS 293
Query: 364 CTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKIC 423
T+EM+ + D+ VIDEIQM+ DA RG WT A+LG++A EIHLCG+ S + ++ K+
Sbjct: 294 GTIEMIPLHKKMDLCVIDEIQMIGDAQRGSVWTNAVLGVLAHEIHLCGEESAVPLIEKLV 353
Query: 424 SETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHH 483
TGDEL + ++R L +E K L+ ++ GDC+V FS+R+I E K IE+ T
Sbjct: 354 EITGDELEVKKFDRLGKLTMEKKP--TSLKTLKKGDCLVVFSKRKILEYKCRIEQETKLK 411
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
+IYGALPPE R Q+A FN + E+DVLVASDA+GMGLNL I R+VF ++K+NG ++
Sbjct: 412 VGMIYGALPPEIRAQEAARFN--NGEYDVLVASDAIGMGLNLKINRIVFSGINKFNGSEV 469
Query: 544 IPVPGSQVKQIAGRAGR----RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
+ SQVKQIAGRAGR GS +GL T L L Y+ ECL+ P ++K L+P
Sbjct: 470 ENLTTSQVKQIAGRAGRFSVEHGS--REGLVTALQRSSLLYIKECLESPIAELEKACLWP 527
Query: 600 FFEQVELFAGQLSNYT----FCQLLEKF---GENCRLDGSYFLCRHDHIKKVANMLEK-- 650
++ ++NY+ + L +F N + D YFL + + +++ K
Sbjct: 528 ---TDLVWKYYMTNYSTTSPLSETLSRFISSTSNFKSD-LYFLADLEVKTGILDIISKDK 583
Query: 651 -VQGLSLEDRFNFCFAPVNIRDP----------------------KAMY-------HLLR 680
++ ++++D+ P++I P K ++ HLL
Sbjct: 584 LLKNMTIDDQLTLSETPISIHGPMNRELVIPTVKKFFKTIVERSCKTVFDFGFLDLHLLS 643
Query: 681 FASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+KN + +P G+ + LE+ H+++ + LWLS +F
Sbjct: 644 AKPMLNKN------IKIPLGNVE------QLESMHKLILLSLWLSQRF 679
>gi|449543322|gb|EMD34298.1| hypothetical protein CERSUDRAFT_125481, partial [Ceriporiopsis
subvermispora B]
Length = 806
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 202/615 (32%), Positives = 309/615 (50%), Gaps = 79/615 (12%)
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMK-RKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
D I + +ADL +P+ ++P AR+ + R +I H GPTNSGKT+NAL+ AK G+Y
Sbjct: 196 DTIAVMTELFRAADLAQPYRFYPRARIGRPRTVIMHVGPTNSGKTHNALRALAAAKTGVY 255
Query: 324 CSPLRLLAMEVFDKVN-----ALGV----------------------------------- 343
PLRLLA E+F+++N GV
Sbjct: 256 GGPLRLLAAEIFERLNRGQIVPAGVDPNADAGAEPDTDSTVDVGDAREAGQVVIRKTGTE 315
Query: 344 ----YCSLLTGQEKKLVPFS-NHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
C+++TG+E+K + ++CTVEM + YDVAV+DEIQ+++D RG AWT A
Sbjct: 316 RYARTCNMITGEEQKFMGDDVGLLSCTVEMTPLNRDYDVAVLDEIQLIADPDRGGAWTAA 375
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG 458
+LGL A E+HLCG+ + + +++ + +TGD L Y+R PL V A+T LGDL + G
Sbjct: 376 VLGLNARELHLCGEETAVPLIQAMLRDTGDRLIVNRYQRLTPLKV-AETNLGDLTQLEKG 434
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
DC+V FSR+ I +K +EK T C V YG LPPE R +QA LFND +N + +L+ SDA
Sbjct: 435 DCIVTFSRKGILNIKKLVEKGTGMQCAVAYGRLPPEIRNEQAALFNDPENNYGILIGSDA 494
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--GLTTTLNLD 576
+G+GLNL I+R++F S+ K++G+K+ P+P + +KQIAGRAGR G D G+ TT +
Sbjct: 495 IGLGLNLKIKRMIFESVRKFDGNKLSPLPVALIKQIAGRAGRFGLHSDDSGGVVTTFAEE 554
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFL 635
DLD + E L P K + E + L N +L+ RL Y L
Sbjct: 555 DLDIVREALAAPMGEHKFARMNLSSEIFRAISTALPPNSPSATVLQVMHYVSRLHPRYSL 614
Query: 636 CRHDHIKKVANMLEKVQ-GLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI- 693
+K + ++ V + D+ F AP RDP + + R Y + V +
Sbjct: 615 FDMTQVKNIFEFIDVVAPDVPAADQILFTQAPTPWRDPYGVDIIGRMMLRYRTDLRVDLY 674
Query: 694 --------------AMGMPKGSAKNDAELLD----LETKHQVLSMYLWLSHQFKEEVFPY 735
A + +G L D LE+ H+V++ YLW S++ K FP+
Sbjct: 675 ASLQDSTLWNKFVEAEAIQRGDKPEPKSLADVLNILESVHKVVTFYLWTSYR-KPLAFPH 733
Query: 736 AKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGYDRPRSIIKSYENRKRQ 795
K+ + L+ +W + G+ LH++ D + +S + +++ R
Sbjct: 734 MKEGFDLKEKTERLM-------DWCLDRMTTGEGGLHRRTRDDRIQYKSGVDVRQDKLRS 786
Query: 796 -EKTSLTLHTEKIPA 809
T+ + K P+
Sbjct: 787 ASATASEMSKNKAPS 801
>gi|365987095|ref|XP_003670379.1| hypothetical protein NDAI_0E03190 [Naumovozyma dairenensis CBS 421]
gi|343769149|emb|CCD25136.1| hypothetical protein NDAI_0E03190 [Naumovozyma dairenensis CBS 421]
Length = 761
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 188/483 (38%), Positives = 268/483 (55%), Gaps = 47/483 (9%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
+++ P WF AR MKR II H GPTNSGKTY ALQ+ ++ G Y PLRLLA EV+D
Sbjct: 242 VNISDPAEWFVEARKMKRHIIMHLGPTNSGKTYKALQKLKTSESGYYAGPLRLLAREVYD 301
Query: 337 KVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+ G+ C+LLTG+E K L N + TVEM+ ++ +DV V+DEIQMM+D R
Sbjct: 302 TFKSQGIRCNLLTGEEIIKDLDSMGNSAKLTSGTVEMIPLNKKFDVIVLDEIQMMNDEDR 361
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWT ALLG+ A E+HLCG+ S L ++ KI TGD L YER L VE++ L
Sbjct: 362 GWAWTNALLGVQAREVHLCGEKSALPLISKIIKLTGDRLTINEYERLGELKVESEVLKRG 421
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L ++R GDC+VAFS+++I ++K+ IE TN VIYG+LPPETR QQA LFN + E
Sbjct: 422 LYSLRKGDCIVAFSKKKILDLKLQIEAKTNLKVAVIYGSLPPETRVQQAQLFN--EGECH 479
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDG 568
VLVASDA+GMGLNL+I R++F + KYNG +++ + S +KQI GRAGR G+ G
Sbjct: 480 VLVASDAIGMGLNLSIDRIIFTTDLKYNGKELMKLTNSNIKQIGGRAGRFKFEGNGPAIG 539
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
++L+ + LD + E ++ P E +KK ++P + E QL+ +F +
Sbjct: 540 SISSLHTEVLDSVKEGIEAPIEYLKKAVIWPTDKICE------------QLMIRFPPGTK 587
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLS----------------LEDRFNFCFAPVNIRDP 672
+ G D ++ +N L KV GL D+ APV P
Sbjct: 588 V-GVLLQTLSDQLEAGSNKLFKVSGLDNKFNVIKLFEDMEDIPFLDKLKLSNAPVK-NLP 645
Query: 673 KAMYHLLRFASSYSK-------NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLS 725
+F + SK + P + K +D L E + ++ ++ WLS
Sbjct: 646 MVQEAFSQFCLTISKKETRTLLSYPFPFYILQYKNITNDDYGLERYEALYNIIMLFFWLS 705
Query: 726 HQF 728
+++
Sbjct: 706 NRY 708
>gi|323302785|gb|EGA56591.1| Suv3p [Saccharomyces cerevisiae FostersB]
Length = 648
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 125 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 184
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 185 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 244
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 245 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 304
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+++I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 305 GIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 362
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 363 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 422
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 423 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTI 481
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 482 SDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 539
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 540 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 594
>gi|323335091|gb|EGA76381.1| Suv3p [Saccharomyces cerevisiae Vin13]
Length = 737
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 275/475 (57%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+ +I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKXKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>gi|6325228|ref|NP_015296.1| Suv3p [Saccharomyces cerevisiae S288c]
gi|2506501|sp|P32580.2|SUV3_YEAST RecName: Full=ATP-dependent RNA helicase SUV3, mitochondrial;
Flags: Precursor
gi|1039448|gb|AAB68158.1| Suv3p: mitochondrial ATP-dependent DExH box helicase [Saccharomyces
cerevisiae]
gi|190407918|gb|EDV11183.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Saccharomyces cerevisiae RM11-1a]
gi|285815508|tpg|DAA11400.1| TPA: Suv3p [Saccharomyces cerevisiae S288c]
gi|392295982|gb|EIW07085.1| Suv3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 737
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+++I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>gi|71655679|ref|XP_816399.1| RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70881524|gb|EAN94548.1| RNA helicase, putative [Trypanosoma cruzi]
Length = 623
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 184/510 (36%), Positives = 288/510 (56%), Gaps = 42/510 (8%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R E + +P W+P AR M+R+ ++H GPTNSGKT+ AL+ ++AK G+YC+PL+ L
Sbjct: 103 RKAPEKVTMHEPWDWYPKARFMRRRFVFHYGPTNSGKTHAALETLVKAKSGVYCAPLKAL 162
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
A +V+ +++A V C LL G E++ + H++CTVEM D DV VIDE+QM++D
Sbjct: 163 AAQVWKRIDA-SVPCDLLIGDERRFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIADRD 221
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD--ELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A EIHLCG+ + ++RK+ +T + L ++R PL V + +L
Sbjct: 222 RGWAWTRALLGLPAREIHLCGEERAIPLIRKVLYKTHELQRLEVVPHKRLVPLEV-SPSL 280
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND--- 505
GDLR + +GD +V FSRR IF++K +E + IYG++P R QA+ FN+
Sbjct: 281 DGDLRRIENGDTLVCFSRRAIFDMKKKLENISGMAPHCIYGSMPFSVREAQADAFNNGTR 340
Query: 506 -----QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ + VL+++DA+ GLN++I R++F S+ K++G +++ +P + + Q+AGRAGR
Sbjct: 341 DVIEGKSGKKHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQMVTLPQATILQVAGRAGR 400
Query: 561 RGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF--------AGQ 610
G + + G TTL+ +D L E + ++K GL P E +EL+ G+
Sbjct: 401 FGVLRSHKFGRCTTLDSNDFAVLCEAVNSRLPSLQKAGLLPTAEVLELYIRLREAEEGGR 460
Query: 611 LSN---YTFCQLLEKFGENCRLDGSYFLCRHDH-IKKVANMLEKVQGLSLEDRFNFCFAP 666
++ +F Q + +F E C+ +F C + +VA LE V LSL DR FC+ P
Sbjct: 461 VTENNLASFYQRMREFSECCQASDLFFPCDLSRSLLQVAKELEAVTDLSLSDRILFCYVP 520
Query: 667 VNIRDPKAMYHLLR-FASSYSKNAPVSIAMGMPKGSAKNDAELL---DLETKHQVLS--- 719
+N R K Y LLR F ++ V + + +L+ D HQVL+
Sbjct: 521 LNDRG-KETYDLLRAFGHDHAAGRHVVLRIDEEFERLVKQCDLVCSGDTRRAHQVLTRME 579
Query: 720 -------MYLWLSHQFKEEVFPYAKKAEAM 742
MY WL+ +F + F + + A A+
Sbjct: 580 HLYRVAEMYCWLAWRFG-KTFVHLETATAL 608
>gi|151942764|gb|EDN61110.1| suppressor of var1 [Saccharomyces cerevisiae YJM789]
gi|256270509|gb|EEU05693.1| Suv3p [Saccharomyces cerevisiae JAY291]
Length = 737
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+++I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGDV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>gi|345570647|gb|EGX53468.1| hypothetical protein AOL_s00006g334 [Arthrobotrys oligospora ATCC
24927]
Length = 821
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 195/292 (66%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
A+ + P W+P R MKR H GPTNSGKTYNAL++ EAKKGIYC PLRLLA EV+
Sbjct: 204 ANFSHPAEWYPKTRTMKRTWHLHVGPTNSGKTYNALKKLEEAKKGIYCGPLRLLAHEVYS 263
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
++NA G+ C+L TG+EK+ A TVEM + DVAVIDEIQM+SD RG+AWT
Sbjct: 264 RLNAKGIKCNLRTGEEKRATEDVTLWAATVEMAQLETQLDVAVIDEIQMLSDPERGWAWT 323
Query: 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR 456
+A+LGLMA E+HLCG+ + +V K+ GD+L Y+R L V ++L GD +
Sbjct: 324 QAVLGLMAKELHLCGEERAVGIVEKLARLCGDDLVIHRYQRLGKLQVMNESLNGDFSKIE 383
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GDC+V FSR++I +K +E+ T C ++YGALP ETR QA FND N +DVLVAS
Sbjct: 384 KGDCIVGFSRKDIHTLKRFVEQVTGLKCAIVYGALPAETRATQAKYFNDPKNNYDVLVAS 443
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG 568
DA+G+GLNL+I+RV+F ++ K+NG + + + +QIAGRAGR S D
Sbjct: 444 DAIGLGLNLSIKRVIFSTMFKFNGQENVEISIPLTRQIAGRAGRYRSAADDA 495
>gi|346318514|gb|EGX88117.1| ATP-dependent RNA helicase SUV3 [Cordyceps militaris CM01]
Length = 761
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 187/543 (34%), Positives = 291/543 (53%), Gaps = 41/543 (7%)
Query: 256 VEFCIEEFPDEIKRFRAMIESA-----DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
+++C + F + +RF +E++ +L PH WFP R M+R I H GPTNSGKTY
Sbjct: 171 IQYCFQSFVTQ-QRFSRGVEASQADLLNLRYPHEWFPATRAMQRTIHVHVGPTNSGKTYT 229
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI--ACTVEM 368
AL+ + G+Y PLRLLA EV+ ++ A + C+L+TG+E ++ ++ +CTVEM
Sbjct: 230 ALKALEASTCGVYAGPLRLLAAEVYHRLRAKNLPCALITGEEVRIPEDTDRYFSSCTVEM 289
Query: 369 VSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD 428
+ ++ +DVAVIDEIQM+ +A RG AWT A LG+ A ++H+CG+ + ++ +C+ GD
Sbjct: 290 MPLNKRFDVAVIDEIQMIGNADRGSAWTTAFLGVQAKDVHVCGEERTVALIESLCATIGD 349
Query: 429 ELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIY 488
+ YER PL + L G + GD +VAFSR + +K +E+ T C +IY
Sbjct: 350 KCVVHRYERLSPLKTMSTALEGRYHQLEKGDAIVAFSRVSLHALKRQVEQETGRRCAIIY 409
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPV 546
G LPPE R QQA LFND DN++D +VASDA+GMGLNL I+RV+F S+ K++G +++ V
Sbjct: 410 GTLPPEVRVQQAALFNDPDNDYDFVVASDAIGMGLNLEIKRVIFESVYKFDGFQHRMLSV 469
Query: 547 PGSQVKQIAGRAGRRGSIYPD--------------GLTTTLNLDDLDYLIECLKQPFEVV 592
P + KQI GRAGR S G T ++ D+ L + +Q E +
Sbjct: 470 P--EFKQIGGRAGRYRSAQQAQDDATPADNAEQKVGYVTAMDRQDVRALTKAFQQDVEDI 527
Query: 593 KKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
K + P VE FA T LL + + + L ++A++++ +
Sbjct: 528 KHAYIQPPPSVVERFASYFPPDTPLSFLLMRIKAAATVSPHFRLNISSSALEIADIIQDL 587
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA----------PVSIA-MGMPKG 700
LS+ DR + C P+++ ++ L A + N P+ + + + +
Sbjct: 588 P-LSIYDRLSICHMPISLSSEGSVAALKAMARVVAHNESGDLLSIREIPLEVLDLRLTEL 646
Query: 701 SAKNDAE-LLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANW 759
S K + L LE+ H L+ Y+WLS++F +F + A T + E L SL N+
Sbjct: 647 SGKEATDYLYKLESLHMALNGYIWLSYRFT-GLFRSIELAFHARTLVEEKLIDSLEKLNF 705
Query: 760 KPE 762
E
Sbjct: 706 TDE 708
>gi|344302882|gb|EGW33156.1| hypothetical protein SPAPADRAFT_71052 [Spathaspora passalidarum
NRRL Y-27907]
Length = 693
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 179/499 (35%), Positives = 285/499 (57%), Gaps = 45/499 (9%)
Query: 266 EIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCS 325
+I+ R+ ++ D + P W+P AR MKRKI+ H GPTNSGKTY++L + +A+ G Y
Sbjct: 166 KIRTTRSESKTIDFSNPSEWYPNARKMKRKIVMHVGPTNSGKTYHSLLKLEKARSGYYAG 225
Query: 326 PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNHIACTVEMVSTDEMYDVA 378
PLRLLA E+F+K GV C+L+TG+E ++P S A TVEM+ ++ D+
Sbjct: 226 PLRLLAREIFEKFQQRGVSCNLVTGEE--IIPSYDDNGVISEISAGTVEMIPLNKKMDIC 283
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG AWT ALLG++A EIHLCG+ S + +V+KI + TGDEL + ++RF
Sbjct: 284 VIDEIQMIGDHQRGAAWTNALLGVLAKEIHLCGEESAVQLVKKIVAVTGDELEIKRFKRF 343
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
L V+ + + ++ GDCVVAFS+++I ++K IE++T ++YG+LPPE R +
Sbjct: 344 GKLTVQNR--ITSFTTLKKGDCVVAFSKKKILDLKNQIEQNTRLKVGIVYGSLPPEIRSK 401
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRA 558
+A FN + E+DVLVASDA+GMGLNL I+R+VF S+ K+NG + + SQVKQIAGRA
Sbjct: 402 EAQSFN--NGEYDVLVASDAIGMGLNLKIKRIVFQSVKKFNGKDLQGLSDSQVKQIAGRA 459
Query: 559 GRRGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNY-- 614
GR + +G T L++ L Y+ + +P ++K L+P ++ ++N+
Sbjct: 460 GRYFAKDGMQEGFVTALDMPTLKYVRNAMAKPVVQLEKAALWP---TPAVWKHHMANWDT 516
Query: 615 --TFCQLLEKFGENC-RLDGSYFLCRHDHIKKVANMLEKVQ------GLSLEDRFNFCFA 665
+ L +F + +L + I+K +L + + ++D+
Sbjct: 517 NEPYLDTLYRFAKKVPKLKLKDYFISPMEIEKRCELLSMFKPGKLHDKIEIDDQITLSDV 576
Query: 666 PVNIRDPKA--MYHLLR-FASSYSKNAP--------VSIAMGMPKGSAKNDAE-----LL 709
P+ +RD +Y+ +R S + N + + + + S D + +
Sbjct: 577 PLRLRDDHGGPVYNAMREMVESVATNKSRGLLHYSFIDLKLLEMEPSRSFDVDEPMQRVQ 636
Query: 710 DLETKHQVLSMYLWLSHQF 728
LE H ++ +++WLS +F
Sbjct: 637 QLEIMHNLILVFMWLSQRF 655
>gi|366991679|ref|XP_003675605.1| hypothetical protein NCAS_0C02490 [Naumovozyma castellii CBS 4309]
gi|342301470|emb|CCC69239.1| hypothetical protein NCAS_0C02490 [Naumovozyma castellii CBS 4309]
Length = 739
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 182/473 (38%), Positives = 268/473 (56%), Gaps = 27/473 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
+++ P WF AR ++R II H GPTNSGKTY ALQ+ A+ G Y PLRLLA E++D
Sbjct: 217 VNISNPAEWFSEARKIRRHIIMHIGPTNSGKTYKALQKLKTAESGYYAGPLRLLAREIYD 276
Query: 337 KVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+ + G+ C+LLTG+E + L N + TVEMV ++ +D+ V+DEIQMMSD R
Sbjct: 277 RFKSEGIRCNLLTGEEVIRDLDDMGNSAKLTSGTVEMVPLNKKFDIVVLDEIQMMSDEDR 336
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWT ALLG A E+HLCG+ S L +VRKI TGD+L YER L VE K++
Sbjct: 337 GWAWTNALLGAQAREVHLCGEKSTLPLVRKIVEMTGDQLTINEYERLGGLNVEKKSIKTK 396
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L+ + GDC+VAFS+++I ++K+ IE T+ VIYG+LPPETR QQANLFN E D
Sbjct: 397 LKGLERGDCIVAFSKKKILDLKLEIEAKTDMKVAVIYGSLPPETRVQQANLFN--SGEAD 454
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS---IYPDG 568
+LVASDA+GMGLNL+I R++F + K+NG ++I + S +KQI GRAGR S P G
Sbjct: 455 ILVASDAIGMGLNLSIDRIIFSTDLKFNGKELINLSSSNIKQIGGRAGRFKSHDEDRPTG 514
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
++ + L + E ++ P E +K ++P + E + T +L + +
Sbjct: 515 YISSFDSAVLQSVKEGIEAPIEYLKSAVIWPTDKICEQLLMRFPPGTPPSVLLQTLSDQL 574
Query: 629 LDGSYFLCRHDHIK---KVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLRFASS 684
GS + + ++K +V + E + + D+ APV +D P F +
Sbjct: 575 EKGSKKIFKVSNLKDKFEVIKIFEHMDDIPFLDKLKLSNAPV--KDLPMVKKAFYNFCQT 632
Query: 685 YSK---------NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+K N P + KN E+ E + ++ ++ WLS+++
Sbjct: 633 IAKGQTRGLLTYNIPFKLLDYRYITDDKNGLEV--YEALYNIIMLFFWLSNRY 683
>gi|34582378|sp|O74727.1|SUV3_SACDO RecName: Full=ATP-dependent RNA helicase SUV3, mitochondrial;
Flags: Precursor
gi|3688566|emb|CAA09716.1| suv3 protein [Saccharomyces douglasii]
Length = 737
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 273/475 (57%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WF AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE------KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
D+ + V C+LLTG+E K P + + TVEMV ++ +DV V+DEIQMMSDA
Sbjct: 274 DRFQSEKVRCNLLTGEEVIRDLDDKGNP-AGLTSGTVEMVPINQKFDVVVLDEIQMMSDA 332
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT ALLG+++ E+HL G+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 333 DRGWAWTNALLGVVSKEVHLVGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEDKPVK 392
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
++ +R GDCVVAFS++++ ++K+ IEK TN VIYG+LPPETR QQA LFN + E
Sbjct: 393 DGIKGLRKGDCVVAFSKKKVLDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGE 450
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI----- 564
+D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR S
Sbjct: 451 YDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSKSTSGG 510
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 511 VPQGFITSFESKVLKSVRKAIESPIEYLKTAVTWPTDEICAQLMTQFPPGTPTSDLLQTI 570
Query: 624 GENCRL--DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELERSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>gi|302495911|ref|XP_003009969.1| hypothetical protein ARB_03895 [Arthroderma benhamiae CBS 112371]
gi|291173491|gb|EFE29324.1| hypothetical protein ARB_03895 [Arthroderma benhamiae CBS 112371]
Length = 796
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 174/465 (37%), Positives = 254/465 (54%), Gaps = 41/465 (8%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P AR M+RKI H GPTNSGKTY+ALQR +AK G Y PLRLLA E++
Sbjct: 197 ADFRYPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYS 256
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC---TVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++N G+ C+L+TG E + VP S + TVEMV + +V VIDEIQM++D RG+
Sbjct: 257 RLNKKGISCALITGDEVR-VPESGPVKVYSNTVEMVPIGQEVEVGVIDEIQMIADPHRGW 315
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + +++++ S GD L +Y+R PL +L GD+R
Sbjct: 316 AWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMGDTLEIHNYKRLNPLKTMTSSLKGDIR 375
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 376 RLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIVYGSLPAEIRAQQADLFNDPNNDYDFL 435
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
VASDA+GMGLNL + S S NG++ V GL T L
Sbjct: 436 VASDAIGMGLNLAAQ-----SSSSTNGNEKENV---------------------GLVTCL 469
Query: 574 NLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGS 632
+ DL Y+ + E + G+ P ++ ++ T F + ++ R D
Sbjct: 470 DEADLPYIRAAMMAEAEPLDAAGILPLDSVIDNYSNMFPPDTPFGYIYQRLERVSRTDPP 529
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS 692
+F+C+ + +L+ +QGL++ D+ F AP+ DP + FA +
Sbjct: 530 FFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAPLRATDPVMARVIKAFAECVGQQKSGR 589
Query: 693 IAMGMP--------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
+ + +P + + +D E L LE H+ L +YLWL ++F
Sbjct: 590 L-LDIPELDLEILDRPVSGDDKEYLRSLEALHRSLILYLWLGYRF 633
>gi|407404477|gb|EKF29914.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 623
Score = 306 bits (783), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 183/510 (35%), Positives = 287/510 (56%), Gaps = 42/510 (8%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R E + +P W+P AR M+R+ ++H GPTNSGKT+ AL+ ++AK G+YC+PL+ L
Sbjct: 103 RKAPEKVTMHEPWDWYPKARFMRRRFVFHYGPTNSGKTHAALETLVKAKSGVYCAPLKAL 162
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
A +V+ +++A V C LL G E++ + H++CTVEM D DV VIDE+QM++D
Sbjct: 163 AAQVWKRIDA-SVPCDLLIGDERRFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIADRD 221
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD--ELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A EIHLCG+ + ++RK+ +T + L ++R PL V + +L
Sbjct: 222 RGWAWTRALLGLPAREIHLCGEERAIPLIRKVLYKTRELQRLEVVPHKRLVPLEV-SPSL 280
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND--- 505
GDLR + +GD +V FSR+ IF++K +E + IYG++P R QA+ FN+
Sbjct: 281 DGDLRRIENGDTLVCFSRKAIFDMKKKLENISGMAPHCIYGSMPFSVREAQADAFNNGTR 340
Query: 506 -----QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ + VL+++DA+ GLN++I R++F S+ K++G +++ +P + + Q+AGRAGR
Sbjct: 341 DVIEGKSGKKHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQMVVLPQATILQVAGRAGR 400
Query: 561 RGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF----------- 607
G + + G TTL+ +D L E + ++K GL P E +EL+
Sbjct: 401 FGVLRSHKFGRCTTLDSNDFAVLREAVNSRLPSLQKAGLLPTAEVLELYIRLREAEEGNR 460
Query: 608 AGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDH-IKKVANMLEKVQGLSLEDRFNFCFAP 666
+ + +F Q + +F E C+ +F C + +VA LE V LSL DR FC+ P
Sbjct: 461 VTENNLASFYQRMREFSECCQASDLFFPCDLSRSLLQVAKELEAVTDLSLSDRILFCYVP 520
Query: 667 VNIRDPKAMYHLLR-FASSYSKNAPVSIAMGMPKGSAKNDAELL---DLETKHQVLS--- 719
+N R K Y LLR FA ++ V + + +L+ D HQVL+
Sbjct: 521 LNDRG-KETYDLLRAFAYDHAAGRQVVLRIDEDFERLVKQCDLVCSGDTRRAHQVLTRME 579
Query: 720 -------MYLWLSHQFKEEVFPYAKKAEAM 742
MY WL+ +F + F + + A A+
Sbjct: 580 HLYRAAEMYCWLAWRFG-KTFVHLETATAL 608
>gi|342872115|gb|EGU74512.1| hypothetical protein FOXB_14957 [Fusarium oxysporum Fo5176]
Length = 763
Score = 306 bits (783), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 178/486 (36%), Positives = 266/486 (54%), Gaps = 40/486 (8%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D P+ WFP R M+R I H GPTNSGKTY AL+ +K+G+Y PLRLLA EV+ +
Sbjct: 196 DFRFPYEWFPATRAMQRTIHVHVGPTNSGKTYRALKALENSKRGVYAGPLRLLANEVYQR 255
Query: 338 VNALGVYCSLLTGQEKKLVPFSNH--IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+ A G+ C+LLTG+E +L ++ +CTVEMV ++ +DVAVIDEIQM++D RG AW
Sbjct: 256 LTAKGLPCALLTGEEVRLPEDTDTYFTSCTVEMVPFNDRFDVAVIDEIQMLADPDRGNAW 315
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T ALLG+ A E+HLCG+ + +++ IC+ GD+ Y+R PL L GD +
Sbjct: 316 TTALLGVQAKEVHLCGEERTVSLIQSICAGIGDKCIVHRYDRLSPLEPMNDALDGDYSRL 375
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
GD +VAFSR + +K IEK T C +IYG+LPPE R QQA LFND DN++D +VA
Sbjct: 376 EKGDAIVAFSRLNLHALKRTIEKKTGRRCAIIYGSLPPEVRVQQAALFNDPDNDYDFIVA 435
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRAGRRGSIYPD------ 567
SDA+GMGLNL IRRV+ +++K++G ++++ P ++KQI GRAGR ++
Sbjct: 436 SDAIGMGLNLEIRRVILEAVAKFDGSHNRMLTYP--ELKQIGGRAGRYRTVRNAAEAGTN 493
Query: 568 -----------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT- 615
G TT++ DL + + ++ + P +E F+ T
Sbjct: 494 ADVAVEEETKVGYVTTMDTQDLRSVHRAFGAKVDDIEAAYISPPAAAIERFSTYFPKGTP 553
Query: 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAM 675
+L + E + Y + ++A+ ++ + L++ DR F P+N R A+
Sbjct: 554 LSFILMRIRELASVSKQYRIHISPDKLEIADHIQDIP-LTIYDRLLFTNLPINARAQNAV 612
Query: 676 YHLLRFASSYS----------KNAP---VSIAMGMPKGSAKNDAELLDLETKHQVLSMYL 722
L A + K P + I KG++ L LE+ H ++ Y+
Sbjct: 613 PVLRALARIVANSEDGGLLKIKEIPLENLEIDFKTFKGTSME--YLHRLESLHAAINQYI 670
Query: 723 WLSHQF 728
WLS++F
Sbjct: 671 WLSYRF 676
>gi|302655081|ref|XP_003019335.1| hypothetical protein TRV_06616 [Trichophyton verrucosum HKI 0517]
gi|291183051|gb|EFE38690.1| hypothetical protein TRV_06616 [Trichophyton verrucosum HKI 0517]
Length = 766
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 174/465 (37%), Positives = 254/465 (54%), Gaps = 41/465 (8%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
AD P W+P AR M+RKI H GPTNSGKTY+ALQR +AK G Y PLRLLA E++
Sbjct: 201 ADFRYPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYS 260
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIAC---TVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
++N G+ C+L+TG E + VP S + TVEMV + +V VIDEIQM++D RG+
Sbjct: 261 RLNKKGISCALITGDEVR-VPDSGPVKVYSNTVEMVPIGQEVEVGVIDEIQMIADPHRGW 319
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA+LG A E+HLCG+ + +++++ S GD L +Y+R PL A +L GD+R
Sbjct: 320 AWTRAVLGCQAQELHLCGEERAVPLIQRLVSLMGDTLEIHNYKRLNPLKTMASSLKGDIR 379
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
+ GDC+VAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++D L
Sbjct: 380 RLEKGDCIVAFSRVGIHSLKQEIEKATGRRAAIVYGSLPAEIRAQQADLFNDPNNDYDFL 439
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
VASDA+GMGLNL + S NG++ V GL T L
Sbjct: 440 VASDAIGMGLNLAAQ-----SSGSANGNEKENV---------------------GLVTCL 473
Query: 574 NLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGS 632
+ DL Y+ + E + G+ P ++ ++ T F + ++ R D
Sbjct: 474 DEADLPYIRAAMMAEAEPLDAAGILPLDSVIDNYSNMFPPDTPFGYIYQRLERVSRTDPP 533
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS 692
+F+C+ + +L+ +QGL++ D+ F AP+ DP + FA +
Sbjct: 534 FFMCKIQDTEATFGLLDNIQGLNVIDKMVFMSAPLRATDPVMARVIKAFAECVGQQKSGR 593
Query: 693 IAMGMP--------KGSAKNDAELL-DLETKHQVLSMYLWLSHQF 728
+ + +P + + +D E L LE H+ L +YLWL ++F
Sbjct: 594 L-LDIPELDLEILDRPVSGDDKEYLRSLEALHRSLILYLWLGYRF 637
>gi|401623187|gb|EJS41293.1| suv3p [Saccharomyces arboricola H-6]
Length = 737
Score = 305 bits (781), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 275/475 (57%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WF AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFSEARKIRRHIIMHIGPTNSGKTYKALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE------KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
D+ V C+LLTG+E K P + + TVEMV ++ +DV V+DEIQMMSDA
Sbjct: 274 DRFQNEKVRCNLLTGEEVIRDLDDKGNP-AGLTSGTVEMVPLNQKFDVVVLDEIQMMSDA 332
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT ALLG+++ E+HLCG+ SVL +++ I TGD+L YER L VE +
Sbjct: 333 DRGWAWTNALLGVVSKEVHLCGEKSVLPLIKNIVKMTGDKLTINEYERLGKLSVEDNPVK 392
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
G ++ +R GDCVVAFS+++I ++K+ IEK TN VIYG+LPPETR QQA+LFN + E
Sbjct: 393 GGIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQASLFN--NGE 450
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI----- 564
+D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR S
Sbjct: 451 YDIMVASDAIGMGLNLSIDRVVFTTDMKYNGEELMEMTSSQIKQIGGRAGRFKSKSPSGD 510
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E ++ +P E Q T LL+
Sbjct: 511 VPQGFITSFESRVLKSVRKAIEAPVEYLRTAVTWPTDEICAQLMTQFPPGTPASVLLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L + KV + E ++ + D+ APV +D P +
Sbjct: 571 ADELEKSSDKLFTLSDLKNKLKVIALFEHMEDIPFLDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>gi|349581785|dbj|GAA26942.1| K7_Suv3ap, partial [Saccharomyces cerevisiae Kyokai no. 7]
Length = 608
Score = 305 bits (780), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 222/335 (66%), Gaps = 14/335 (4%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+++I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
P G T+ L + + ++ P E +K +P
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWP 545
>gi|323346239|gb|EGA80529.1| Suv3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 648
Score = 305 bits (780), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 221/335 (65%), Gaps = 14/335 (4%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+ +I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKXKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
P G T+ L + + ++ P E +K +P
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWP 545
>gi|336368066|gb|EGN96410.1| hypothetical protein SERLA73DRAFT_186151 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380797|gb|EGO21950.1| hypothetical protein SERLADRAFT_475024 [Serpula lacrymans var.
lacrymans S7.9]
Length = 584
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 184/500 (36%), Positives = 267/500 (53%), Gaps = 64/500 (12%)
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN-----ALGV--- 343
M+RK+I H GPTNSGKT+ AL+ A+ G+Y PLRLLA E+++++N LGV
Sbjct: 1 MRRKVIMHVGPTNSGKTHMALRALAAARVGVYAGPLRLLAHEIWERLNKGQIVPLGVDPD 60
Query: 344 ---------------------------------YCSLLTGQEKKLVPFS-NHIACTVEMV 369
C+L TG+E + V S ++CTVEM+
Sbjct: 61 DEAQPDTTLIADVVNTEGSRPTVRKEGSSKYARECNLRTGEEARYVSDSAGLLSCTVEMI 120
Query: 370 STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDE 429
+ DVAV+DEIQM++D RG AWT A+LGL A E+HLCG+ + + ++ ++ +TGDE
Sbjct: 121 TESAELDVAVVDEIQMIADTDRGAAWTHAVLGLPARELHLCGEETAVPIIEELLKDTGDE 180
Query: 430 LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYG 489
L + YER PLVV+ ++L GDL V+ GDCVV FSR IF +K +E+ T C V YG
Sbjct: 181 LIVKRYERLTPLVVQEESLEGDLNRVQKGDCVVTFSRSNIFALKQKVERATGLRCAVAYG 240
Query: 490 ALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGS 549
LPPE R +QA LFND ++ +DV++ SDA+GMGLNL I+R+VF +L K++GD+ + S
Sbjct: 241 RLPPEIRSEQAALFNDPNSGYDVMIGSDAIGMGLNLKIKRIVFEALRKFDGDRERMLSTS 300
Query: 550 QVKQIAGRAGRRG-SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFA 608
Q+KQIAGRAGR G P G TTLN DDL L L P + + L ++ +
Sbjct: 301 QIKQIAGRAGRYGLHGEPGGFVTTLNADDLPALRSALSMPADPLTMARLVIKSSWLDSVS 360
Query: 609 GQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK-VQGLSLEDRFNFCFAP 666
L + + + E G ++ + + ++A ++ L+ ED+ + AP
Sbjct: 361 QVLPPDASLLTIFEVPGYVSKVRQPFQATTQHRLDEMAKFVDTFANDLTFEDKLLYMSAP 420
Query: 667 VNIRDPKAMYHLLRFASSYSKNAPVSIAMG----------------MPKGSAK---NDAE 707
++ DP + L RF Y V I M G + +
Sbjct: 421 ISWSDPAFLEVLKRFVRMYQSQIRVDIYTALRSAPFLPMLTEIEELMSTGQLRFSPSPKT 480
Query: 708 LLDLETKHQVLSMYLWLSHQ 727
L LET H+VL +Y+WL ++
Sbjct: 481 LPTLETLHKVLVLYMWLGNR 500
>gi|365757986|gb|EHM99853.1| Suv3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 648
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 275/475 (57%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WF AR ++R II H GPTNSGKTY AL++ +G Y PLRLLA EV+
Sbjct: 125 NVDITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALRKLKSVDRGYYAGPLRLLAREVY 184
Query: 336 DKVNALGVYCSLLTGQE------KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
D+ V C+LLTG+E K P + + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 185 DRFQNEKVRCNLLTGEEVIRDLDDKGNP-AGLTSGTVEMVPINQKFDVVVLDEIQMMSDV 243
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K ++
Sbjct: 244 DRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLTVEDKPVV 303
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
++ +R GDCVVAFS+++I ++K+ IEK T+ VIYG+LPPETR QQA+LFN E
Sbjct: 304 DGIKGLRKGDCVVAFSKKKILDLKLKIEKDTSLKVAVIYGSLPPETRVQQASLFN--KGE 361
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS-----I 564
+DV+VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR S
Sbjct: 362 YDVMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSTSDD 421
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 422 IPQGFITSFESKVLKSIRKAIESPVEYLKTAVTWPTDEICAHLMTQFPPGTPASALLQTI 481
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L + K+ + E+++ + D+ APV +D P +
Sbjct: 482 SDELEKSSDKLFTLSDLKNKVKIIGLFEQMEDIPFLDKLKLSNAPV--KDMPMVTNAFTK 539
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 540 FCETIAKRHTRGLLSYQLPFNLLNYNCIPNESYSLEVYESLYNIITLYFWLSNRY 594
>gi|367006372|ref|XP_003687917.1| hypothetical protein TPHA_0L01260 [Tetrapisispora phaffii CBS 4417]
gi|357526223|emb|CCE65483.1| hypothetical protein TPHA_0L01260 [Tetrapisispora phaffii CBS 4417]
Length = 739
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/333 (45%), Positives = 214/333 (64%), Gaps = 12/333 (3%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
+ + P WFP AR M+R II H GPTNSGKTY ALQ+ A+ G Y PLRLLA EV+D
Sbjct: 218 STILNPAEWFPEARKMRRNIIMHLGPTNSGKTYRALQKLKSAEVGYYAGPLRLLAREVYD 277
Query: 337 KVNALGVYCSLLTGQE-----KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+ G+ C+LLTG+E ++ + + T+EMVS + +DV V+DEIQM++D R
Sbjct: 278 RFKTEGLRCNLLTGEEIIEDLSEIGTPAGITSGTIEMVSMSKTFDVVVLDEIQMLADNDR 337
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWT ALLG+ A E+HLCG+ S L V++KI TGD L Y+R L+VE + D
Sbjct: 338 GWAWTNALLGVKAKEVHLCGEKSALPVIKKIVESTGDNLIVHEYDRLGNLIVEKSPMNND 397
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
+ +R GDCV+AFS+++I ++K+ +E+ T VIYG+LPPETR QQA LFN + E+D
Sbjct: 398 FKGLRKGDCVIAFSKKKILDLKLTVERETKLKVGVIYGSLPPETRVQQARLFN--NGEYD 455
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-----RGSIYP 566
VLVASDAVGMGLNL I RV+F + K+NG ++ + S +KQI GRAGR +
Sbjct: 456 VLVASDAVGMGLNLAIDRVIFTTDLKFNGKELQELTSSNIKQIGGRAGRYKHNDSSNEVA 515
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
G T+ + D L + + ++ P E ++ ++P
Sbjct: 516 IGKVTSFHGDVLTTIRKGMEAPIEYIESATIWP 548
>gi|336369621|gb|EGN97962.1| hypothetical protein SERLA73DRAFT_91128 [Serpula lacrymans var.
lacrymans S7.3]
Length = 509
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/382 (43%), Positives = 234/382 (61%), Gaps = 9/382 (2%)
Query: 299 HCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY---CSLLTGQEKKL 355
H GPTNSGKT++AL+ A GIY PLRLLA E+++++N +Y C+L+TG+E K+
Sbjct: 2 HVGPTNSGKTHHALRALAAAPTGIYAGPLRLLAHEIWERLNLGQIYARGCNLITGEEVKI 61
Query: 356 VPFSNHI-ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
V + + +CTVEM+ T+ +YDVAV+DEIQM+ D+ RG+AWT A+LGL A EIHLCG+ +
Sbjct: 62 VDENARLYSCTVEMIKTNMLYDVAVVDEIQMIGDSERGFAWTEAVLGLNAREIHLCGEET 121
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
+ +V + ET D+L YER PL VE ++L G+L +R GDC+V FSRR IF++K
Sbjct: 122 AVPLVEAMLRETNDDLVVNRYERLTPLEVEKQSLGGNLSKIRKGDCIVTFSRRSIFQMKR 181
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
+EK C +YG LPPE R +QA+LFND +N FD+L+ SDA+GMGLNL IRR++
Sbjct: 182 DVEKTMGVTCATVYGRLPPEVRSEQADLFNDANNGFDILIGSDAIGMGLNLKIRRIIIAQ 241
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
+ KY+ + + + S KQIAGRAGR G P GLTTTLN +DL +L +K P
Sbjct: 242 VRKYHDNHVQYLSISSTKQIAGRAGRFGLHGKESPVGLTTTLNEEDLPFLTRTMKLPIPS 301
Query: 592 VKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650
+K + P + A L ++ + +L +Y + N L+
Sbjct: 302 LKTARITPSNPSLVATASALPPHSAMNTIFLAHAYTSKLAPTYRYIYSGATRVCTNYLDA 361
Query: 651 -VQGLSLEDRFNFCFAPVNIRD 671
+QG+S+ D AP+ RD
Sbjct: 362 YIQGVSMTDFEVMLAAPIPWRD 383
>gi|401840253|gb|EJT43151.1| SUV3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 737
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 275/475 (57%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WF AR ++R II H GPTNSGKTY AL++ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALRKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE------KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
D+ V C+LLTG+E K P + + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFQNEKVRCNLLTGEEVIRDLDDKGNP-AGLTSGTVEMVPINQKFDVVVLDEIQMMSDV 332
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K ++
Sbjct: 333 DRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLTVEDKPVV 392
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
++ +R GDCVVAFS+++I ++K+ IEK T+ VIYG+LPPETR QQA+LFN E
Sbjct: 393 DGIKGLRKGDCVVAFSKKKILDLKLKIEKDTSLKVAVIYGSLPPETRVQQASLFN--KGE 450
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS-----I 564
+DV+VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR S
Sbjct: 451 YDVMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSTSDD 510
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 511 IPQGFITSFESKVLKSVRKAIESPVEYLKTAVTWPTDEICAHLMTQFPPGTPASALLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L + K+ + E+++ + D+ APV +D P +
Sbjct: 571 SDELEKSSDKLFTLSDLKNKVKIIGLFEQMEDIPFLDKLKLSNAPV--KDMPMVTNAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYQLPFNLLNYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>gi|149248272|ref|XP_001528523.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448477|gb|EDK42865.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 739
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 191/548 (34%), Positives = 297/548 (54%), Gaps = 65/548 (11%)
Query: 252 FPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA 311
+ + ++ I+ P E K D + P WFP AR MKRKI+ H GPTNSGKTY +
Sbjct: 203 YQYYEKYTIQTTPFESKEI-------DFSNPTEWFPEARKMKRKIVMHVGPTNSGKTYRS 255
Query: 312 LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP-------FSNHIAC 364
L + ++K G Y PLRLLA E++++ N GV C+L+TG+E ++P S +
Sbjct: 256 LVQLSKSKTGYYAGPLRLLAREIWERFNKQGVGCNLITGEE--IIPSIDEYGHISGVASG 313
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
T+EM+ + D+ VIDEIQM+ D RG WT A+LG++A EIHLCG+ S + ++ K+
Sbjct: 314 TIEMIPLHKTMDLCVIDEIQMIQDEQRGSVWTNAVLGVLAREIHLCGEESAVPLIEKLVK 373
Query: 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHC 484
TGD+L + ++R L VE++ + DL ++R GDC+VAF++R+I E K +EK+TN
Sbjct: 374 YTGDDLEIKRFKRMGKLTVESQPV--DLYSLRKGDCLVAFAKRKILEYKSKLEKNTNLRV 431
Query: 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKII 544
V+YG LPPE R Q+A FN ++DVLVASDAVGMGLNL I+R+VF S +KYNG ++
Sbjct: 432 GVVYGGLPPEIRAQEAEKFN--TGKYDVLVASDAVGMGLNLKIKRIVFSSTNKYNGTELK 489
Query: 545 PVPGSQVKQIAGRAGR----RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF 600
+ SQVKQIAGRAGR +GS +G T L + L ++ + + P E + + ++P
Sbjct: 490 NLTPSQVKQIAGRAGRFSVEKGS--QEGFVTALTRESLVFIKKNMDTPIEYLSRARIWP- 546
Query: 601 FEQV--ELFAGQLSNYTFCQLLEKF-GENCRLDGSYFLCRHDHIKKVANMLEKVQ----- 652
E V A Q + + + +F E + + + + +VA LE +Q
Sbjct: 547 SELVWKHYMANQSTTESLYETFTRFLSEKMKFEHEDY-----ELSEVAPKLEILQIISDD 601
Query: 653 ----GLSLEDRFNFCFAPVNIR--------DPKAMYHLLRFASSYSKNA--------PVS 692
+++ D+F P+N+R P L S+ P+
Sbjct: 602 KYLRNMTINDQFVLAETPINLRGVLGNELIQPIIKMFLQNVVDRQSRTIFEFSLLQDPLI 661
Query: 693 IAMGMPKGSAKNDAELLD----LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAE 748
I + + K+ ++ LE H+++ ++LWLS ++ +F + A + + +
Sbjct: 662 IEVLSSRPILKSVESTMENVEILEAIHKLVLVFLWLSQRY-STLFIDKQSATELKALVEK 720
Query: 749 LLGQSLTN 756
L + L N
Sbjct: 721 RLSEELRN 728
>gi|392567821|gb|EIW60996.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 645
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 228/631 (36%), Positives = 316/631 (50%), Gaps = 121/631 (19%)
Query: 263 FPDEI-KRFRAMIESADLTKPHTW-FPFARVMK-RKIIYHCGPTNSGKTYNALQRFMEAK 319
P EI R +A+ +ADL+ +TW +P R + RK I H GPTNSGKT+NAL+ AK
Sbjct: 26 IPQEIVSRMQALFRAADLSH-NTWEYPLTRRSRPRKFIMHVGPTNSGKTHNALRALAAAK 84
Query: 320 KGIYCSPLRLLAMEVFDKVN-----ALGVY------------------------------ 344
+GIY PLRLLA E+FD++N LG+
Sbjct: 85 RGIYAGPLRLLAYEIFDRLNKGQIVPLGMEPDPEDEPDSQSNIDLGEAAVTGQSVIVTKS 144
Query: 345 --------CSLLTGQEKKLVP-FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
C+++TG+E+K+V + ++CTVEM + +DVAVIDEIQ+++D RG AW
Sbjct: 145 GNPKYARPCNMVTGEEQKIVSDNAPLLSCTVEMTPHLDTWDVAVIDEIQLIADKNRGGAW 204
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T A+LG+ A EIHLCG+ S + V+ I + GD L YER PLVV ++L GDL V
Sbjct: 205 TSAVLGINAAEIHLCGEESAIPVIEAIIRDLGDTLEINRYERLTPLVVAEESLGGDLSKV 264
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GDC VAFSR IF +K IE+ C + YG LPPE R +QA LFND +++DVLV
Sbjct: 265 QKGDCAVAFSRTGIFGMKSRIEEENKMRCALAYGRLPPEIRAEQAALFNDPKSDYDVLVG 324
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTT 572
SDA+GMGLNL I+RV+F +++K++G + + SQ+KQIAGRAGR G P G+ TT
Sbjct: 325 SDAIGMGLNLKIKRVIFEAVAKFDGGRSRVMSSSQIKQIAGRAGRFGMHGDDTPGGVVTT 384
Query: 573 LNLDDLDYLIECLKQPFEVVK----KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
L+ DL+ + + L P+E ++ +GL F V S T +
Sbjct: 385 LHAGDLEIVRKALAAPYEPIRYARISMGLPDFLRVVRALPPGFSQMTVADVF-------- 436
Query: 629 LDGSYFLCRHDHIK-KVANMLEK--------VQGLSLEDRFNFCFAPVNIRDPKAM---- 675
Y H ++ N LE + L+LE+R AP RD A+
Sbjct: 437 ---VYVSKLHPRMEYHAVNELETCFKFIDQFIDCLTLENRLLAQNAPCPWRDDNAVRGAQ 493
Query: 676 ----YHLLRFASSYS---------KNAPVSIAMGMPKGSAKND-----AELLDLETKHQV 717
H F S KN ++ M M S K D A L LET H+V
Sbjct: 494 AIMELHREHFRVSLEGALQRAGILKNINNALVM-MENDSLKCDSKQIVAALAKLETVHKV 552
Query: 718 LSMYLWLSHQFKEEVFPYAKKAEAMA------TDIA-----ELLGQSLTNANWKPESRQA 766
+ +YLW S++F FP +AMA T++A E+L Q NA P A
Sbjct: 553 IVLYLWYSYRFS-VAFP----DQAMAFELRRLTELAMDWCLEVLHQMRINA---PNPAVA 604
Query: 767 GKPKLHQQREDGYDRPRSIIKSYENRKRQEK 797
+ + ++R D I + +R EK
Sbjct: 605 ARKSVLERRSTTGDE----IATKRESRRHEK 631
>gi|406607580|emb|CCH41051.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 863
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 269/476 (56%), Gaps = 29/476 (6%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D++ P W+P AR ++RK+I H GPTNSGKTY+ALQR ++ G Y PLRLLA E++
Sbjct: 213 NVDISNPEEWYPEARKIRRKLILHMGPTNSGKTYHALQRLKQSNDGYYAGPLRLLAREIY 272
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSNHI-----ACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
DK + G+ C+L+TG+E + I + TVEM+ ++ ++V V+DEIQM++D
Sbjct: 273 DKFKSEGIRCNLVTGEEVIEDRDESGIEASLSSGTVEMIPVNQRFEVVVLDEIQMIADKF 332
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AW+ ALLG ADEIHLCG+ SV+ ++++I TGDE+ YER L +E + + G
Sbjct: 333 RGWAWSHALLGAQADEIHLCGEESVIPLIKRIAETTGDEVIINRYERLGELQIEDQPVTG 392
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
L + GDC+VAFS++ I K I+ T+ C VIYGALP ETR +A FN + E+
Sbjct: 393 GLNGLEKGDCIVAFSKKRIMAYKEEIQNKTDLKCGVIYGALPAETRATEAERFN--NGEY 450
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLT 570
DVLVASDA+GMGLNL+I RV+F S K++GD++ + QVKQI GRAGR + DG
Sbjct: 451 DVLVASDAIGMGLNLSINRVIFDSHKKFDGDQLRALESPQVKQIGGRAGRFKAPGADGKK 510
Query: 571 -------TTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQL-LEK 622
+ D L+++ E + P +++ ++P L+ T ++ LE
Sbjct: 511 SKSLGKISAFYPDTLEFIRESMSTPTIFLERADVWPSDTIWSLYTSTFPKQTRLKIVLET 570
Query: 623 FGENCRLDGSYFLCRHDHIKKVANMLEKV-QGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
F +N Y + +VA+ L ++ + + D+ AP++ P+ + F
Sbjct: 571 FHKNVEDTKLYRISTLRDRLEVAHALNEISNSMLVGDQLRMSTAPLSSTLPRYHAVIEHF 630
Query: 682 ASSYSKNAPVSI---------AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
++ SI + P A+ D +L E H+ + ++LW+ +++
Sbjct: 631 GNNVIHGFTKSILDFAFLNFSCLNRP---ARQD-DLSTYEELHKYVLLFLWMHNRY 682
>gi|50293791|ref|XP_449307.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528620|emb|CAG62281.1| unnamed protein product [Candida glabrata]
Length = 724
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 179/485 (36%), Positives = 269/485 (55%), Gaps = 42/485 (8%)
Query: 274 IESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAME 333
+ S D + P WFP AR ++R II H GPTNSGKT+ +LQ+ A +G Y PLRLLA E
Sbjct: 205 VHSVDFSNPAEWFPEARKIRRHIIMHVGPTNSGKTFRSLQKLKAADRGYYAGPLRLLARE 264
Query: 334 VFDKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSD 388
V++K V C+LLTG+E K L N + T+EM+ ++ +DV V+DEIQMM+D
Sbjct: 265 VYEKFKHENVRCNLLTGEEVIKDLDEMGNEANLTSGTIEMIPLNQNFDVVVLDEIQMMAD 324
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWT ALLG A E+H CG+ S + +++KI TGD+L YER LVVE + L
Sbjct: 325 LDRGWAWTNALLGAKAKEVHCCGEASTIPLIKKIVEMTGDKLTINEYERMGKLVVEEEAL 384
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
+++ GDCVVAFS++ I ++K+ IEK T VIYG+LPPETR +QANLFN
Sbjct: 385 TKGYHSLKKGDCVVAFSKKAILDLKLEIEKKTELKAAVIYGSLPPETRVKQANLFN--SG 442
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIY-- 565
EFD+L+ASDA+GMGLNL+I RVVF + K++G ++ + S +KQI GRAGR + +I+
Sbjct: 443 EFDILIASDAIGMGLNLSIDRVVFTTSKKFDGRDMVDMTSSAIKQIGGRAGRFKQNIHDN 502
Query: 566 ---PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLE 621
P G T + + L + E + P E + +P E + T C+ LLE
Sbjct: 503 GELPVGYITAVKPNVLKAVREAINAPIEYLTSATTWPTDEICTHVMTRFMPGTTCKTLLE 562
Query: 622 KFGENCRLDGS--YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHL 678
+ + + +C +++ ++ ++ D+ AP ++D P
Sbjct: 563 TIAADIEQSSNKLFQICDLKARMSAIEIIDSMEDITFSDKLRLSNAP--LKDFPLVKAAF 620
Query: 679 LRFASSYSKNAPVSIAMGMPKG--SAKNDAELLDL-------------ETKHQVLSMYLW 723
+F +IA G +G S + ++L+L E + ++ ++ W
Sbjct: 621 KKFCD--------TIARGHTRGLLSYRFPFDILNLKYIYTEKHGLEEYEALYNIIMLFFW 672
Query: 724 LSHQF 728
LS+++
Sbjct: 673 LSNRY 677
>gi|170085747|ref|XP_001874097.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651649|gb|EDR15889.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 833
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 172/479 (35%), Positives = 248/479 (51%), Gaps = 81/479 (16%)
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
+ ++AD + H +P AR M RK+I H GPTNSGKT++AL+ +K+G+Y PLRLLA
Sbjct: 183 LAQAADRSFLHEQYPAARKMHRKVIMHVGPTNSGKTHHALRALAASKRGVYAGPLRLLAH 242
Query: 333 EVFDKVN-----------------------------------ALGVYCSLLTGQEKKLV- 356
EV++++N A C+++TG+E+K+V
Sbjct: 243 EVWERLNLGQIVPLGMDEPPITLTPTATDDVTPSSPSKSKQTAYARVCNMITGEEQKIVS 302
Query: 357 ---PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413
P ++CTVEM++ + Y +AVIDEIQM++D RG WT A+LG++A+E+HLCG+
Sbjct: 303 DDAPL---LSCTVEMLNFNTRYQIAVIDEIQMIADPQRGSGWTSAVLGILAEELHLCGEE 359
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVK 473
+ + VV+ + +TGDE+ + YER PL V +L GDL V GDC+V F R IF +K
Sbjct: 360 TAVPVVQALLKDTGDEVVIRRYERLTPLKVAETSLGGDLGKVEKGDCIVTFKRSSIFAIK 419
Query: 474 MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFY 533
+E+ T C V+YG LPPE R +QA LFND + +DV+V SDA+GMGLNL IRR++F
Sbjct: 420 KEVERKTGMKCAVVYGRLPPEIRSEQAALFNDPGSGYDVMVGSDAIGMGLNLKIRRIIFE 479
Query: 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-------GLTTTLNLDDLDYLIECLK 586
L+KY+ P+ SQ+KQIAGRAGR G G TTL+ DL L L
Sbjct: 480 CLTKYSAGAFQPLSTSQIKQIAGRAGRYGQHLSSSSSSSHCGYATTLHPADLPTLSSALS 539
Query: 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVAN 646
+PF+ V + S TF L + L H +I ++
Sbjct: 540 KPFKPVHHAHI------------TYSTTTFSALRSLLPPSSAGSTKTVLSAHAYIGRLPK 587
Query: 647 MLEKV--------------------QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
+ +G+++ +R APV RD + + RF Y
Sbjct: 588 FVRYTYDAQVDQACECVDLYGGDANEGMTVRERLKHLSAPVGWRDEVMIGVMARFLGMY 646
>gi|367009990|ref|XP_003679496.1| hypothetical protein TDEL_0B01560 [Torulaspora delbrueckii]
gi|359747154|emb|CCE90285.1| hypothetical protein TDEL_0B01560 [Torulaspora delbrueckii]
Length = 739
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 165/333 (49%), Positives = 217/333 (65%), Gaps = 12/333 (3%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
D++ P WFP AR MKR II H GPTNSGKTY ALQ+ +A +G Y PLRLLA E++D
Sbjct: 208 VDISNPTEWFPEARKMKRHIIMHIGPTNSGKTYQALQKLKKADRGYYAGPLRLLAREIYD 267
Query: 337 KVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
+ GV C+LLTG+E + L N + TVEMV + +DV V+DEIQMM+D R
Sbjct: 268 RFQEEGVRCNLLTGEEVIQDLDVAGNPAGITSGTVEMVPLTQNFDVVVLDEIQMMADLDR 327
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWT ALLG A EIH+CG+ S L V+RKI GD+L YER L VE K L
Sbjct: 328 GWAWTHALLGARAREIHVCGEKSTLPVIRKIAEMAGDKLTVNEYERLGQLQVEPKALNKG 387
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L+++R GDCVVAFS+++I ++K+ IEK T+ VIYG+LPPETR QQANLFN D +D
Sbjct: 388 LKSLRKGDCVVAFSKKKILDLKLKIEKETSLKVAVIYGSLPPETRIQQANLFNTGD--YD 445
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-----RGSIYP 566
VLVASDA+GMGLNL+I R+VF + K+NG +++ + S +KQI GRAGR G P
Sbjct: 446 VLVASDAIGMGLNLSIDRIVFTTNVKFNGLELVDLTSSNIKQIGGRAGRFKANADGGEIP 505
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
G T L+ L + + ++ P + + ++P
Sbjct: 506 KGYITALDPRVLKSVRQGIEAPIKYLSSAVIWP 538
>gi|254577005|ref|XP_002494489.1| ZYRO0A02706p [Zygosaccharomyces rouxii]
gi|238937378|emb|CAR25556.1| ZYRO0A02706p [Zygosaccharomyces rouxii]
Length = 738
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 212/335 (63%), Gaps = 12/335 (3%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
+ D++ P WF AR MKR II H GPTNSGKTY ALQ+ A +G Y PLRLLA E+
Sbjct: 208 DDVDISNPVEWFAEARKMKRHIIMHIGPTNSGKTYRALQQLKHANRGYYAGPLRLLAREI 267
Query: 335 FDKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDA 389
+D+ GV C+LLTG+E L N + TVEMV + +DV V+DEIQMM+D
Sbjct: 268 YDRFQKDGVRCNLLTGEEVIHDLDSAGNPAGLTSGTVEMVPLTQDFDVVVLDEIQMMADL 327
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AW+ ALLG A E+H+CG+ S L +++ I TGD+L YER L VE L
Sbjct: 328 DRGWAWSNALLGAKAREVHVCGEKSTLPLIKNIIKMTGDKLTVNEYERLGKLKVEDWVLP 387
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
+++R GDCVVAFS++ I ++K+ IEK TN VIYG+LPPETR QQA+LFN E
Sbjct: 388 KGYKSLRKGDCVVAFSKKRILDLKLRIEKDTNLKVAVIYGSLPPETRIQQAHLFN--SGE 445
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-----RGSI 564
+D++VASDA+GMGLNL+I RV+F + K+NG +++ + S +KQI GRAGR +G
Sbjct: 446 YDIMVASDAIGMGLNLSIDRVIFTTDVKFNGKELVELSSSNIKQIGGRAGRFKSGSQGQD 505
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599
P G TT + L + + P + ++ ++P
Sbjct: 506 IPQGFITTFDPSVLSTIRRGMDAPIDYLQSAVIWP 540
>gi|118388031|ref|XP_001027116.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308886|gb|EAS06874.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 770
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/556 (33%), Positives = 282/556 (50%), Gaps = 82/556 (14%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTK---PHTWFPFARVMKRKIIYHCGPTNSGK 307
L+ +F F + K++ IE +L + PH + R MKRKIIYH GPTNSGK
Sbjct: 235 LYDLFFAFAAQNLG---KKYEESIEIYNLLQIEEPHHLYQDTRKMKRKIIYHYGPTNSGK 291
Query: 308 TYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVE 367
T++AL+ M AK GIYC PLRLLA E++ K G+ C+L+TGQEK + P S +CT E
Sbjct: 292 THSALETLMSAKSGIYCGPLRLLAREIYQKFKQRGLNCNLITGQEKLIEPDSQFYSCTTE 351
Query: 368 M--VSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
+ D +D AVIDEIQ + D RG AWT+A LGL A EIH+CGD L +V +C +
Sbjct: 352 IGCQKIDLDFDCAVIDEIQYLGDQERGAAWTKAFLGLKAKEIHVCGDGRALQLVENMCKQ 411
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG-------------------DCVVAFSR 466
GD+ YER L VE K +L++++ G DC++ FS
Sbjct: 412 VGDQFETVKYERMSQLTVEDKPF--ELQDLQEGVYIYLQNLQFMPIQINKMKDCLICFSV 469
Query: 467 REIFEVKMAIEKHTN-----------HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
E K + + N + C +IYG P E +++QA LFN++ +++ LVA
Sbjct: 470 NEAISFKRIVNNYINSKNPDNPQSQENQCSIIYGRQPAEIKKEQAELFNNRTHKY--LVA 527
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575
++A+G+GLNLNIRRVVF + +K + + + +++ QIAGRAGR DGL T N
Sbjct: 528 TNAIGLGLNLNIRRVVFTTFTKNHQSQRKGIDSNEILQIAGRAGRYRE---DGLVTARN- 583
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS------NYTFCQLLEKFGENCRL 629
+ ++K FP +EQ+E F LS ++ +KF L
Sbjct: 584 --------------QTIQKAAFFPTYEQIEGFRDWLSQGKKKKQIKLSEVFQKFVNYSTL 629
Query: 630 DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN----IRDPKAMYHLLRFASSY 685
G+YF+ A+++E GLSL D+F F AP+ + ++ L FA Y
Sbjct: 630 QGAYFIENEREFCHKADLIEDY-GLSLSDQFTFSQAPMRFGKVFEKERELFQL--FAQKY 686
Query: 686 SKNAPVSI---------AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYA 736
+ +++ + + N L E+ + +L +Y+WL ++F E+ FP
Sbjct: 687 AMGQEIALPNLLKDDDKIKNIKQQQQANKDSLTIYESLYYILELYIWLGNKFGEDRFPDM 746
Query: 737 KKAEAMATDIAELLGQ 752
+ A + I ++ +
Sbjct: 747 QLAHNKKSVICSMMNE 762
>gi|390598472|gb|EIN07870.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 764
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 173/452 (38%), Positives = 245/452 (54%), Gaps = 43/452 (9%)
Query: 264 PDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
PD + + S DL+ P FP AR M+RKII H GPTNSGKT+NAL+ A+ G+Y
Sbjct: 158 PDTTESMHNLYASTDLSYPAERFPNARSMRRKIIMHVGPTNSGKTHNALRALAAARTGVY 217
Query: 324 CSPLRLLAMEVFDKVN------------------ALGV-------------------YCS 346
PLRLLA E+++++N A+G C+
Sbjct: 218 AGPLRLLAHEIWERLNKGQIVPLGAPESLADADDAIGPDIGDGIPAAHRDPRAPYARQCN 277
Query: 347 LLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
L+TG+E+++V + +CTVEM+S +MYDV V+DEIQ++ D RG AWT A+L L A
Sbjct: 278 LVTGEEQRIVNEAAGLTSCTVEMLSPLQMYDVGVVDEIQLIKDDDRGGAWTSAVLSLCAK 337
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E+HLCGD + + ++ I +TGDEL Y+R PL V K+L + +NV+ GDCVV FS
Sbjct: 338 ELHLCGDETAVPIIEDIVKDTGDELIINRYQRLTPLHVAPKSLESNFKNVKKGDCVVTFS 397
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R IF+VK IE+ T C V YG LPPE R +QA LFND + +DV+V SDA+G+GLNL
Sbjct: 398 RNNIFQVKEQIEEETGLRCAVAYGRLPPELRSKQAALFNDPKSGYDVIVGSDAIGLGLNL 457
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLI 582
I RVVF ++ K++G+ +P +KQIAGRAGR G G+ T L+ +D+ L
Sbjct: 458 KINRVVFEAMHKWDGETTQVLPTPLIKQIAGRAGRYGLHGQGNAGGVVTCLHEEDMPILR 517
Query: 583 ECLKQPFEVVKKVGL-FPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHI 641
++ P + ++ L E +F N T E R Y
Sbjct: 518 AAMEAPLDQQREARLHINAAEADPVFQALPRNTTTSAAFEALHHLGRTRPPYLFVLDAKY 577
Query: 642 KKVANMLEKVQG-LSLEDRFNFCFAPVNIRDP 672
++ +++ G L+L +R AP +R P
Sbjct: 578 RRRTEFVDRFAGDLTLAERMTLLNAPFQLRGP 609
>gi|340053225|emb|CCC47513.1| putative RNA helicase, fragment, partial [Trypanosoma vivax Y486]
Length = 623
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 268/497 (53%), Gaps = 41/497 (8%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R + + +P W+P AR M+R+ +YH GPTNSGKT+ AL+ ++AK G+YC+PL+ L
Sbjct: 117 RKAPQKVTMHEPWNWYPKARFMRRRFVYHYGPTNSGKTHAALEELVKAKSGVYCAPLKAL 176
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
A +V+ ++ V C LL G E++ + H++CTVEM D D+ VIDE+QM+S+
Sbjct: 177 AAQVWKYIDT-KVPCDLLIGDERRFGGGAEHVSCTVEMTPIDYQVDIGVIDEVQMISERD 235
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD--ELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A EIHLCG+ + +VR + +T + L ++R PL + +L
Sbjct: 236 RGWAWTRALLGLPAREIHLCGEERAIPLVRNLLYKTRELSGLRLVSHKRLVPLDI-CSSL 294
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
GDL+ V +GDC+V FSR+ IF K +EK IYG++P R QA FN+ N
Sbjct: 295 NGDLKQVENGDCLVCFSRKSIFGFKSKLEKTPGVVPHYIYGSMPFSVREAQAQAFNNGVN 354
Query: 509 EF--------DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
VL+++DA+ GLN+ I RVVF ++ K++G + + + Q+AGRAGR
Sbjct: 355 SVVHGVSSQKHVLISTDAIAYGLNMGIERVVFTTMKKFDGKETKTLSQATTVQVAGRAGR 414
Query: 561 RG--SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS------ 612
G P GL TTL+ DDL L + ++K GL P + +EL+ G S
Sbjct: 415 FGVSRTKPLGLCTTLHADDLPLLKDAFSGLPAPLQKAGLLPTADILELYVGMNSTTKAAV 474
Query: 613 ------NYTFCQLLEKFGENCRLDGSYFLCRHDH-IKKVANMLEKVQGLSLEDRFNFCFA 665
+ F + ++ F +C+ +F C + ++A +LE V L+L DR FC+
Sbjct: 475 DVGIPDSSAFYERIKDFARHCQSSDLFFPCDISRSLLEIARVLESVHDLTLSDRILFCYV 534
Query: 666 PVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKND----AELLDLETKHQVL--- 718
P++ R + L FA ++ PV + + S + E+ DL T ++L
Sbjct: 535 PLSDRSSATLNLLRAFAQEHAAGNPVRLRIDEKFESLSYEYDRLGEMADLSTVQRILEQL 594
Query: 719 -------SMYLWLSHQF 728
MY WL+ +F
Sbjct: 595 ESIYRQAEMYCWLAWRF 611
>gi|444319274|ref|XP_004180294.1| hypothetical protein TBLA_0D02720 [Tetrapisispora blattae CBS 6284]
gi|387513336|emb|CCH60775.1| hypothetical protein TBLA_0D02720 [Tetrapisispora blattae CBS 6284]
Length = 758
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 184/482 (38%), Positives = 261/482 (54%), Gaps = 31/482 (6%)
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
A+ D++ P WFP AR +KR I+ H GPTNSGKTY ALQ + G Y PLRLLA
Sbjct: 205 AIDTDIDISNPAEWFPEARKLKRTIVLHLGPTNSGKTYRALQTLKSSGNGYYAGPLRLLA 264
Query: 332 MEVFDKVNALGVYCSLLTGQE-----KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
EV+D+ A G C+LLTG+E K+ + + T+EMV +D+AV DEIQMM
Sbjct: 265 REVYDRFKAEGFRCNLLTGEEVIQDLDKMGNPAGITSGTIEMVPLHRNFDIAVFDEIQMM 324
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
+D RG+AWT ALLG+ A E+HLCG+ S L +++++ TGD L YER L VE
Sbjct: 325 ADPDRGWAWTIALLGVQAREVHLCGEKSALPLLKELVKMTGDNLVINEYERLGKLTVEKN 384
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
L + + GDC+VAFS+++I ++K+ IEK T V+YG+LPPETR QQANLFN
Sbjct: 385 PLNNNFALLEKGDCIVAFSKKKILDLKLEIEKRTKLKVAVVYGSLPPETRIQQANLFN-- 442
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIY 565
+DV+VASDA+GMGLNL IRRVVF + K+NG ++ + S +KQI GRAGR +
Sbjct: 443 SGTYDVVVASDAIGMGLNLAIRRVVFTTNMKFNGKEMESLTSSNIKQIGGRAGRFKADCN 502
Query: 566 PDGLTTTLNLDD---LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTF-CQLLE 621
+ + + D L + ++ P E + ++P E QL + T +L E
Sbjct: 503 KEDIRGYITATDRYVLASVNNGIEAPIEYLTACCIWPTDEICNNIMKQLPSGTLMSELFE 562
Query: 622 KFGENCRLDGSYF----LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMY 676
K LD Y L + KV +EK+ +S ++ C AP ++D P
Sbjct: 563 KIS--ILLDKKYNKFFKLSDLSNKLKVIKTMEKLNNISFSEKLRLCNAP--MKDFPLTKD 618
Query: 677 HLLRFASSYSKNAPVSI--------AMGMPKGSAKNDAE--LLDLETKHQVLSMYLWLSH 726
F + S+ SI + K + D E L E + + ++Y WL +
Sbjct: 619 AFKLFCETISRGETKSILSYPLPFKILTYDKINDDKDKEYSLEQYEAMYSIFTLYSWLHN 678
Query: 727 QF 728
++
Sbjct: 679 RY 680
>gi|395323837|gb|EJF56292.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 793
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 203/558 (36%), Positives = 288/558 (51%), Gaps = 95/558 (17%)
Query: 264 PDEIKRFRAMIESADLTKPHTWFPFAR-VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
P + R +++ +ADL+ + R RK I H GPTNSGKT+NAL+ AK+G+
Sbjct: 170 PKALARMQSLFRAADLSNAGWEYTHTRGAPPRKFIMHVGPTNSGKTHNALRALAAAKRGV 229
Query: 323 YCSPLRLLAMEVFDKVN-----ALGV---------------------------------- 343
Y PLRLLA E+FD++N LG+
Sbjct: 230 YAGPLRLLAFEIFDRLNKGQIVPLGMEPDPQAEPDSQSNIDLGDGAEKGKAVIVKTGNPR 289
Query: 344 ---YCSLLTGQEKKLVP-FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
C+++TG+E K+V + ++CTVEM +DVAV+DEIQ++SD RG AWT A+
Sbjct: 290 YARQCNMVTGEEHKIVSDTAPLLSCTVEMTPHATYFDVAVVDEIQLISDRQRGGAWTAAV 349
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL A EIHLCG+ S + ++ + +TGD L Y R PLVV K+L GD+ ++ GD
Sbjct: 350 LGLNAREIHLCGEESAVPLIEALVKQTGDTLEVNRYNRLTPLVVADKSLNGDISRIKKGD 409
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
CVV FSR +FE++ IE+ T C + YG LPPE R +QA LFND ++ +DVLV SDAV
Sbjct: 410 CVVTFSRMGLFELQKNIEEATKMRCALAYGRLPPEIRSEQAALFNDPNSGYDVLVGSDAV 469
Query: 520 GMGLNLNIRRVVFYSLSKYNGDK-IIPVPGSQVKQIAGRAGRRGSIYPD--GLTTTLNLD 576
GMGLNL IRRVVF ++SK++G + P+ SQ+KQIAGRAGR G D G+ TTL+
Sbjct: 470 GMGLNLKIRRVVFETVSKFDGTRGQRPLSASQIKQIAGRAGRFGMHGDDTAGIVTTLHPG 529
Query: 577 DLDYLIECLKQPFEVVKKVGLFPFFEQ----VELFAGQLSNYTFCQLLEKFGENCRLDGS 632
DLD + E L FE + L E VE + SN T ++
Sbjct: 530 DLDLVREALATSFEPLHTARLNMTMESYRKIVEALPWESSNITVAEVY------------ 577
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF----------APVNIRDPKAMY------ 676
+++ R + + ++ E QG D F C +P RD A+
Sbjct: 578 HYVSRMSPLFEFQSIHELEQGFLFIDDFADCLTLPMRLLATNSPTPWRDDFAVTGARTMM 637
Query: 677 ------------HLLRFASSYSK-NAPVSIAMG-MPKGSAKNDAELL-DLETKHQVLSMY 721
+LR K N+ + + G +P + K+ +L LET H+V+++Y
Sbjct: 638 EIYRDSFRVPIDEMLRRGRLLKKLNSALVLMEGRVPAFTQKDVVPVLAHLETLHKVIALY 697
Query: 722 LWLSHQFKEEVFPYAKKA 739
LW S++ FP +KA
Sbjct: 698 LWFSYRHP-VAFPDQEKA 714
>gi|50556074|ref|XP_505445.1| YALI0F15147p [Yarrowia lipolytica]
gi|49651315|emb|CAG78254.1| YALI0F15147p [Yarrowia lipolytica CLIB122]
Length = 718
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 196/539 (36%), Positives = 294/539 (54%), Gaps = 57/539 (10%)
Query: 224 SYFIKKCPDDVAQYLVWLGPSDDAV--KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTK 281
++ + + ++L WL D + LF +++ + ++R R I DL
Sbjct: 171 NHVVNRTQKPSVEFLKWLAQEDSILCEHHLFRSYIKDLLISRGFSVER-RGKI---DLRH 226
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P +P AR++ RKII H GPTNSGKTY AL+R +AK G Y PLRLLA E +D++
Sbjct: 227 PEELYPDARMITRKIICHLGPTNSGKTYRALERLKKAKSGYYAGPLRLLARETYDRIKDE 286
Query: 342 GVYCSLLTGQE--------KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
G+ +L TG+E + P + A T+EM+ T+++ +V VIDEIQM++D RG+
Sbjct: 287 GLPINLKTGEEVINCEDEFGRPAPLT---AGTIEMIDTNQLMEVCVIDEIQMLNDQSRGW 343
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AW A+LG+ A E+HLCG+ SV++++ KI ++TGD L YER L +E + L L+
Sbjct: 344 AWLNAVLGVQAKEVHLCGEESVVNMIEKIVAKTGDTLEINRYERLGTLEMERRP-LKSLK 402
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
VR+GDCVVAFSR+++FE + IE T C +IYGALPPETR Q+ FN NE VL
Sbjct: 403 EVRAGDCVVAFSRKKVFEFRQEIEATTGKKCSIIYGALPPETRVTQSRDFNSGVNE--VL 460
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYN--GDKIIPVPGSQVKQIAGRAGRR--------GS 563
VA+DAVGMGLNL+I R++F ++ KY+ GD + P Q KQIAGRAGR GS
Sbjct: 461 VATDAVGMGLNLSINRIIFAAIRKYDGLGDFNLLEP-PQTKQIAGRAGRYKVPGSDKVGS 519
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEK 622
+ GL T+++ Y+ ECL P ++ + + P +LFA +S +L+ +
Sbjct: 520 V---GLVTSMSNQQSKYVAECLAAPTIMLSTLYVKP---HDDLFAPLVSGVKGLAKLMAR 573
Query: 623 FGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFN----------FCFAPVNIRDP 672
+ L Y L + +++ QGLSL+ N +C A V
Sbjct: 574 MNQLTDLSVDYRLPSFESQLELSEAC--FQGLSLDQALNISGLPFGNAKYCEAQV----- 626
Query: 673 KAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD-LETKHQVLSMYLWLSHQFKE 730
AM + + Y+ A +++ A E L +E H+++S Y WL +++ +
Sbjct: 627 LAMTRAMALGTVYT-TAQLALPALQEYFLAPVAVERLKIMEDLHKMISAYRWLQNRYPQ 684
>gi|410082243|ref|XP_003958700.1| hypothetical protein KAFR_0H01550 [Kazachstania africana CBS 2517]
gi|372465289|emb|CCF59565.1| hypothetical protein KAFR_0H01550 [Kazachstania africana CBS 2517]
Length = 746
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 270/474 (56%), Gaps = 24/474 (5%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
ES +T P WFP R ++R II H GPTNSGKTY AL+R E +G Y PLRLLA EV
Sbjct: 206 ESISITDPIDWFPETRKIRRHIIMHLGPTNSGKTYRALKRLGEVDRGYYGGPLRLLAREV 265
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNH------IACTVEMVSTDEMYDVAVIDEIQMMSD 388
+D+ + G C+LLTG+E + H + TVEM+ + +DV V+DEIQM+ D
Sbjct: 266 YDRFKSEGTRCNLLTGEEV-INDLDEHGEKAGLTSGTVEMIPYSQDFDVVVLDEIQMLGD 324
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AW+ ALLG+ A EIHLCG+ SVL V++KI + TGD+L YER L VE+++L
Sbjct: 325 EDRGWAWSNALLGVKAKEIHLCGEKSVLPVIKKITALTGDKLTINEYERLGELSVESRSL 384
Query: 449 L-GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
G++RN+R GDC+VAFS+++I ++K+ IE+ T VIYG+LPPETR QQA+LFN +
Sbjct: 385 KNGNMRNLRKGDCLVAFSKKKILDLKLKIERETKFKVAVIYGSLPPETRLQQASLFN--N 442
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD 567
E+++LVASDA+GMGLNL I R++F + K+NG +++ + S ++QI GRAGR +
Sbjct: 443 GEYEILVASDAIGMGLNLAIDRIIFMTDVKFNGKELVNLTASNIRQIGGRAGRYKDTKDE 502
Query: 568 ---GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQ-VELFAGQLSNYTFCQLLEKF 623
G T L + + ++ P + K+ ++P E +L LL+KF
Sbjct: 503 PSKGFITATKSSVLKSIRDGMEAPMSYLDKIVVWPTDEICAKLMVRYPPRTKLSFLLKKF 562
Query: 624 GENCRLDGSYFLCRHDHIKKVA--NMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
E D K+ ++ E++ + ++ APV P +F
Sbjct: 563 EEQLENHSKQLFKLPDLESKLKTIDLFERMNTIPFHEKLRLSTAPVK-DAPLVKDAFKQF 621
Query: 682 ASSYSKNAPVSIA------MGMPKGSAKNDA-ELLDLETKHQVLSMYLWLSHQF 728
+ S+ S+ + +N+ +L E+ + +++++ WLS+++
Sbjct: 622 CETISERYTKSLLSYDFPFHTLDYSYIQNERYDLEHYESLYNIITLFFWLSNRY 675
>gi|336382398|gb|EGO23548.1| hypothetical protein SERLADRAFT_415998 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1368
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 169/437 (38%), Positives = 243/437 (55%), Gaps = 42/437 (9%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
D+++ R ++RK I H GPTNSGKT++AL+ A GIY PLRLLA E+++
Sbjct: 806 GDVSRASGGTTIRRGLRRKFIMHVGPTNSGKTHHALRALAAAPTGIYAGPLRLLAHEIWE 865
Query: 337 KVNALGVY------------------------------------CSLLTGQEKKLVPFSN 360
++N + C+L+TG+E K+V +
Sbjct: 866 RLNLGQIVPAGIEEEAPPASDSAFDVSPEKASLTKVGNPKYARGCNLITGEEVKIVDENA 925
Query: 361 HI-ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVV 419
+ +CTVEM+ T+ +YDVAV+DEIQM+ D+ RG+AWT A+LGL A EIHLCG+ + + +V
Sbjct: 926 RLYSCTVEMIKTNMLYDVAVVDEIQMIGDSERGFAWTEAVLGLNAREIHLCGEETAVPLV 985
Query: 420 RKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKH 479
+ ET D+L YER PL VE ++L G+L +R GDC+V FSRR IF++K +EK
Sbjct: 986 EAMLRETNDDLVVNRYERLTPLEVEKQSLGGNLSKIRKGDCIVTFSRRSIFQMKRDVEKT 1045
Query: 480 TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN 539
C +YG LPPE R +QA+LFND +N FD+L+ SDA+GMGLNL IRR++ + KY+
Sbjct: 1046 MGVTCATVYGRLPPEVRSEQADLFNDANNGFDILIGSDAIGMGLNLKIRRIIIAQVRKYH 1105
Query: 540 GDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
+ + + S KQIAGRAGR G P GLTTTLN +DL +L +K P +K
Sbjct: 1106 DNHVQYLSISSTKQIAGRAGRFGLHGKESPVGLTTTLNEEDLPFLTRTMKLPIPSLKTAR 1165
Query: 597 LFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK-VQGL 654
+ P + A L ++ + +L +Y + N L+ +QG+
Sbjct: 1166 ITPSNPSLVATASALPPHSAMNTIFLAHAYTSKLAPTYRYIYSGATRVCTNYLDAYIQGV 1225
Query: 655 SLEDRFNFCFAPVNIRD 671
S+ D AP+ RD
Sbjct: 1226 SMTDFEVMLAAPIPWRD 1242
>gi|239606254|gb|EEQ83241.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis ER-3]
Length = 730
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/501 (36%), Positives = 261/501 (52%), Gaps = 77/501 (15%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
F +K RA+ ADL P W+P AR + R I H GPTNSGKTY+AL+R +AK G
Sbjct: 176 FSSSLKEQRAL---ADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYHALKRLEKAKTGF 232
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYD 376
Y PLRLLA E++ ++NA G+ C L+TG E ++ +P +SN TVEM + +
Sbjct: 233 YAGPLRLLAHEIYTRLNAKGIPCGLVTGDEVRISQDQIPGIYSN----TVEMAPFGQDVE 288
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM++D R GLM GD+L HYE
Sbjct: 289 VGVIDEIQMIADPHRA--------GLM-----------------------GDKLEIHHYE 317
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL +++L G+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R
Sbjct: 318 RLNPLKAMSRSLKGNLSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIVYGSLPAEIR 377
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QQA+LFND +N++D LVASDA+GMGLNL+ +R++F S+ + + + SQVKQI G
Sbjct: 378 SQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLTVSQVKQIGG 437
Query: 557 RAGRRGSIYPD-------------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597
RAGR S G T+L DL Y+ + L E + GL
Sbjct: 438 RAGRYRSAKDTANTNSSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTEPEPILAAGL 497
Query: 598 FPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL 656
P V+ F+ T F +L++ ++D S+FL + A ++ ++GLS+
Sbjct: 498 LPPDHIVKRFSEHFPPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAEAIDSIKGLSM 557
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDA 706
+++ F AP ++RDP+ F ++N P+ + + K + +
Sbjct: 558 DEKLVFLSAPTHMRDPQMSNIFREFVRCVAENRSGDLLEIDDLPIDV---LDKPVSGDKG 614
Query: 707 ELLDLETKHQVLSMYLWLSHQ 727
L LET H+ L +YLWLS++
Sbjct: 615 YLATLETLHRSLVLYLWLSYR 635
>gi|261188656|ref|XP_002620742.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis SLH14081]
gi|239593100|gb|EEQ75681.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis SLH14081]
Length = 730
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/501 (36%), Positives = 261/501 (52%), Gaps = 77/501 (15%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
F +K RA+ ADL P W+P AR + R I H GPTNSGKTY+AL+R +AK G
Sbjct: 176 FSSSLKEQRAL---ADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYHALKRLEKAKTGF 232
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYD 376
Y PLRLLA E++ ++NA G+ C L+TG E ++ +P +SN TVEM + +
Sbjct: 233 YAGPLRLLAHEIYTRLNAKGIPCGLVTGDEVRISQDQIPGIYSN----TVEMAPFGQDVE 288
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM++D R GLM GD+L HYE
Sbjct: 289 VGVIDEIQMIADPHRA--------GLM-----------------------GDKLEIHHYE 317
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL +++L G+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R
Sbjct: 318 RLNPLKAMSRSLKGNLSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIVYGSLPAEIR 377
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QQA+LFND +N++D LVASDA+GMGLNL+ +R++F S+ + + + SQVKQI G
Sbjct: 378 SQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLTVSQVKQIGG 437
Query: 557 RAGRRGSIYPD-------------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597
RAGR S G T+L DL Y+ + L E + GL
Sbjct: 438 RAGRYRSAKDTANTNSSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTEPEPILAAGL 497
Query: 598 FPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL 656
P V+ F+ T F +L++ ++D S+FL + A ++ ++GLS+
Sbjct: 498 LPPDHIVKRFSEHFPPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAEAIDSIKGLSM 557
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN----------APVSIAMGMPKGSAKNDA 706
+++ F AP ++RDP+ F ++N P+ + + K + +
Sbjct: 558 DEKLVFLSAPTHMRDPQMSNIFREFVRCVAENRSGDLLEIDDLPIDV---LDKPVSGDKG 614
Query: 707 ELLDLETKHQVLSMYLWLSHQ 727
L LET H+ L +YLWLS++
Sbjct: 615 YLATLETLHRSLVLYLWLSYR 635
>gi|169866863|ref|XP_001840016.1| ATP-dependent RNA helicase suv3 [Coprinopsis cinerea okayama7#130]
gi|116498902|gb|EAU81797.1| ATP-dependent RNA helicase suv3 [Coprinopsis cinerea okayama7#130]
Length = 846
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 201/568 (35%), Positives = 286/568 (50%), Gaps = 95/568 (16%)
Query: 264 PDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
P + + ++E+ D F R M+RK+I H GPTNSGKT++AL+ A G+Y
Sbjct: 241 PSTLDQMTKLVEATDRRYVAEQFVETRRMQRKVIMHVGPTNSGKTHHALRALAAAPYGVY 300
Query: 324 CSPLRLLAMEVFDKVN-----------------------ALGVYCSL------------- 347
PLRLLA E+++++N AL + +L
Sbjct: 301 AGPLRLLAHEIWERLNLGHIVPKGVEDGTYKNDDAPYLKALPHFSTLSELGNPEYARLTN 360
Query: 348 -LTGQEKKLVPFSNHI-ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+TG+E+K+V I +CTVEM+S YDVAV+DEIQM++D RG WT A+LGL A
Sbjct: 361 MITGEEQKIVSDEAKILSCTVEMLSFHRTYDVAVVDEIQMITDPQRGSGWTNAVLGLAAK 420
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E+HLCG+ + + +V + +TGDEL + YER PL VE ++L GD V+ GDC+V F+
Sbjct: 421 EVHLCGEETAVPIVEALLKDTGDELIVKRYERLTPLKVEEESLGGDYSKVQKGDCIVVFN 480
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R+ IF VK +E T C V+YG LPPE R +QA+LFND D+ +DVL+ SDA+GMGLNL
Sbjct: 481 RKGIFAVKKKVEALTGLRCAVVYGRLPPEIRSEQASLFNDPDSGYDVLIGSDAIGMGLNL 540
Query: 526 NIRRVVFYSLSKYN--GDKIIPVPGSQVKQIAGRAGRRG-SIYPDGLTTTLNLDDLDYLI 582
IRRV+F S+ K++ G+ ++ + SQVKQIAGRAGR G P G TTL+ +DL YL
Sbjct: 541 KIRRVIFDSVKKFSAGGESLLSI--SQVKQIAGRAGRFGLHEEPGGYATTLHEEDLPYLR 598
Query: 583 ECLKQPFEVVKKVGLFPF-FEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHI 641
E + PF P F ++ A TF LL N + L H
Sbjct: 599 EAVGSPF--------IPLPFARITFDAN-----TFSNLLSVLPPNSST-STVILAHHYAG 644
Query: 642 KKVANMLEKVQGLSLEDRFNFC----------------FAPVNIRDPKAMYHLLRFASSY 685
+ + + L FNF APV RDP + + F
Sbjct: 645 RLPPKVRYQDTDFELTSTFNFIDEFSDTLTARERVLHLNAPVTWRDPLTVAMVRTFLEQA 704
Query: 686 SKNAPVSIA--------MGMPKGSAK----------NDAELLDLETKHQVLSMYLWLSHQ 727
V + M + +G K N +L LE+ H+ L +Y+W+S
Sbjct: 705 RDKMYVDLPAALKTTRFMDIMEGIEKEMKNESIPRSNLRDLSTLESFHKSLVLYIWMS-- 762
Query: 728 FKEEV-FPYAKKAEAMATDIAELLGQSL 754
F+ + +P + A + + +L SL
Sbjct: 763 FRAPILYPQFQLATELKARLERVLEWSL 790
>gi|403160469|ref|XP_003320970.2| hypothetical protein PGTG_02012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170259|gb|EFP76551.2| hypothetical protein PGTG_02012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 545
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/361 (42%), Positives = 214/361 (59%), Gaps = 31/361 (8%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D+ +P +P AR KR+I H GPTNSGKT++AL+ A G+Y PLRLLA EVF +
Sbjct: 134 DIRRPEDLYPDARRYKRQIHLHVGPTNSGKTHSALRALHSAHTGVYAGPLRLLAHEVFTR 193
Query: 338 VNALGVY-------CSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
+NA + C+LLTG+E+++ P + +CTVEM+S + YDV VIDEIQM+ D
Sbjct: 194 INAGQIAPDLAPRPCNLLTGEEQRISSPTAGLTSCTVEMLSCQQFYDVVVIDEIQMIGDH 253
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWT+A+LG+ A E+HLCG+ SV+ ++ + + DE Y+R PL V +L
Sbjct: 254 FRGDAWTQAVLGVQAKELHLCGEESVVGLIESLANSCQDEFILHRYQRLTPLKVADSSLK 313
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN----- 504
GDL V+ GDC+V FSR I+ +K AI+ T+ + YG LPPE R ++A +FN
Sbjct: 314 GDLSKVQRGDCLVTFSRNNIYALKKAIQSATDLRVGMAYGGLPPEVREREAQMFNLGSQV 373
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564
+ + +DVLV SDA+GMGLNL I+RV+F SL K++G + + SQ+KQI GRAGR G I
Sbjct: 374 EGEGGYDVLVGSDAIGMGLNLKIKRVIFQSLHKFDGRNEVALSTSQIKQIGGRAGRFG-I 432
Query: 565 YPD-----------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
P G T+N D+ L + PFE +++ L F VE
Sbjct: 433 LPKNAGPGESGESREEGRTVGEVLTMNETDMSLLRRSMAAPFEKIERAVLKAPFTTVEGL 492
Query: 608 A 608
A
Sbjct: 493 A 493
>gi|414872748|tpg|DAA51305.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 394
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 243/396 (61%), Gaps = 21/396 (5%)
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
M+ RGY++TRALLGL +DE+H+CGDP+ + ++++I TGD + Q+YER PLV
Sbjct: 1 MVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSPLV-P 59
Query: 445 AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504
K+ LG N+++GDC+V+FSRR I+++K IE+ H C V+YG+LPPETR +QA +FN
Sbjct: 60 LKSPLGSFSNIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVYGSLPPETRTKQATMFN 119
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564
D ++ +VLVASDA+GMGLNLNI R++F ++ K++G + +++KQIAGRAGR GS
Sbjct: 120 DDTSDLNVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGRYGSK 179
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFG 624
+P G T LN DL L LK ++++ GLFP F+ + L++ F +LE+F
Sbjct: 180 FPVGEVTCLNPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYSRLHGTDFFHPILERFL 239
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
E +L YF+ + + KVA +++ + L L D++ FC +PV+ FA +
Sbjct: 240 EKAKLSPDYFITDCEDMLKVAAIVDDLP-LGLYDKYLFCMSPVD------------FAEN 286
Query: 685 YSKNAPVSIAMGMPKGS---AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEA 741
Y++ V + G+ K D +L +LE+ H+VL +Y+WLS + ++ FP + A +
Sbjct: 287 YARKGIVRLKEIFTPGTLQVPKTDNQLKELESVHKVLELYVWLSFRM-DDSFPDREVAAS 345
Query: 742 MATDIAELLGQSLTNANWKPESRQ---AGKPKLHQQ 774
+ + L+ + L W+P+ R+ G KL Q+
Sbjct: 346 QKSICSMLIEEYLERFGWQPQDRRKVLGGAQKLLQE 381
>gi|353234529|emb|CCA66553.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 762
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 228/378 (60%), Gaps = 24/378 (6%)
Query: 219 AGKFRSYFIKKCPDDVAQYLVWL--------GPSDDAVKFLFPIFVEFCIEEFPDEIKRF 270
AG+ + P+++ + W GP++ + L F++ ++
Sbjct: 143 AGRIKEELHSSSPEELDKLWRWEDLQNRMENGPNEAIDRALMARFLKIMPHVDQEQFGFL 202
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
+A+ ++ LT P P AR ++RKII H GPTNSGKTY+AL+ A+ G Y PLRLL
Sbjct: 203 QAVDDALLLTHPAELHPAARQVQRKIILHVGPTNSGKTYHALRALAGAQYGCYAGPLRLL 262
Query: 331 AMEVFDKVNALGV-------------YCSLLTGQEKKLVP-FSNHIACTVEMVSTDEMYD 376
A E+F ++N + C+L+TG++ K++ + I+ TVEMV +D
Sbjct: 263 ATEIFGRLNNGDIAPTGADPTKKYPRVCNLITGEDVKILDDEAGLISATVEMVPLTRKFD 322
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
V VIDEIQM++++ RG AWT+ALLGL A+EIHLCG+ S +++++++ GDE+ YE
Sbjct: 323 VVVIDEIQMIANSERGGAWTQALLGLNAEEIHLCGEESAVELIKELVKPAGDEVIVNRYE 382
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
R PL + K+L +L ++R GDC+VAFSR+ IF +K IE T C VIYG LPPE R
Sbjct: 383 RLTPLQIAPKSLGNNLADIRPGDCIVAFSRKSIFGLKHLIESKTGLRCAVIYGKLPPEVR 442
Query: 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556
QA FN D + VL+ASDA+GMGLNL I+RV+F +L K++G K + + S++KQIAG
Sbjct: 443 VDQAAKFNAGDVDHSVLIASDAIGMGLNLKIKRVLFSTLKKWDGYKNVTISLSEIKQIAG 502
Query: 557 RAGRRGSIYPD--GLTTT 572
RAGR G D G+ TT
Sbjct: 503 RAGRYGLHDADSVGIATT 520
>gi|406694623|gb|EKC97947.1| RNA helicase like protein [Trichosporon asahii var. asahii CBS
8904]
Length = 700
Score = 285 bits (729), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 178/451 (39%), Positives = 245/451 (54%), Gaps = 39/451 (8%)
Query: 269 RFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLR 328
R RA+++ D++ AR M R H GPTNSGKTY+AL+ +AK G+Y PLR
Sbjct: 208 RLRALLQITDISNVAQTHVAARSMNRNFHLHMGPTNSGKTYSALKALSKAKTGVYAGPLR 267
Query: 329 LLAMEVFDKVN--------ALGVYCSLLTGQEKKLVPF-SNHIACTVEMVSTD-----EM 374
LLA EV++++N G C+LLTG+E++LV + ++CTVEM+ E
Sbjct: 268 LLAHEVWERINLGTVGGMDGEGRACNLLTGEERRLVAQDAGLMSCTVEMMPLQGFMGGEP 327
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK-ICSETGDELHEQ 433
+DV VIDEIQM+ D+ RG AW A++G+ A EIHLCGD + ++ + I GD L
Sbjct: 328 WDVVVIDEIQMLGDSERGAAWANAVMGVAAKEIHLCGDETTEKLLHEMIAGFKGDTLTVH 387
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
Y R PL + K+L D++ V++GDCVV FSR +F +K IE+ V+YGALPP
Sbjct: 388 KYNRLTPLKIADKSLHSDMKKVQAGDCVVTFSRSNVFALKNQIERQLGTKAAVVYGALPP 447
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQ 553
ETR +QA FN + VLVASDAVGMGLNL I R++F +L K+NG + +P+ S KQ
Sbjct: 448 ETRAEQARDFN--EGRAQVLVASDAVGMGLNLKINRIIFETLWKWNGKQEVPLSVSSAKQ 505
Query: 554 IAGRAGR----RGSIYPD------------GLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597
IAGRAGR R S D G TTL+ DD L L + VK+ +
Sbjct: 506 IAGRAGRFGQQRTSAAVDTATTGDAPGDTGGTVTTLHEDDFALLKSLLGRTLPSVKRAVI 565
Query: 598 FPFFEQVELFAGQL-SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG-LS 655
P E + L + +F L+E F +L L +A +LE + L+
Sbjct: 566 EPPSEALTALQPLLPAKTSFESLIEHFWALAKLPPRTVLASSTSKTTIAPILEPFRNILT 625
Query: 656 LEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
L + AP+ RD K +RF S+ S
Sbjct: 626 LSELQLLANAPLPARDEKT----VRFFSTLS 652
>gi|16197971|gb|AAL13756.1| LD23445p [Drosophila melanogaster]
Length = 499
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/398 (40%), Positives = 230/398 (57%), Gaps = 15/398 (3%)
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
M S + Y+VAVIDEIQ + D RG+AWTRA LGL+ADE+H+CG+P LD+++KIC TG
Sbjct: 1 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 60
Query: 428 DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVI 487
+ + + Y+R L VE T LG L N+ GDC+V FS+ +I+ V IE VI
Sbjct: 61 ETVEVRLYDRLTELTVE-NTALGSLDNIVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVI 118
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-----K 542
YG LPP T+ QA FND N V+VA+DA+GMGLNL+IRR++FYSL K + + +
Sbjct: 119 YGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGERE 178
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
I + S QIAGRAGR + + G T +DL L L + E +K+ GL P +
Sbjct: 179 IDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTAD 238
Query: 603 QVELFAGQLSNYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFN 661
Q+EL+A L + + L++ F C +D S YF+C + K +A M++ V L L R+
Sbjct: 239 QIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHV-ALPLRARYV 297
Query: 662 FCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAM-----GMPKGSAKNDAELLDLETKHQ 716
FC AP+N + P L+ A YS+N P++ G P K +L+ LE
Sbjct: 298 FCCAPINRKMPFVCSMFLKVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFD 357
Query: 717 VLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
V+ +YLWLS++F ++FP A ++ E++ Q +
Sbjct: 358 VMDLYLWLSYRFM-DLFPEAAYVRDAQKELDEIIQQGV 394
>gi|294954454|ref|XP_002788176.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239903391|gb|EER19972.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 661
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 187/528 (35%), Positives = 265/528 (50%), Gaps = 52/528 (9%)
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
K R + + +L FP R I +H GPTNSGKTY A+Q A +G+YC PL
Sbjct: 106 KNLRHLADLKNLDAKTPAFP------RVIHFHEGPTNSGKTYAAMQALRTASRGVYCGPL 159
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQ-----EKKLVPFSNHIACTVEMVSTDEM--YDVAVI 380
RLLA + F+ + A+G+ L+TGQ E H++CTVEM YDV VI
Sbjct: 160 RLLAWQCFEDLKAMGLDSDLITGQLDASAENTETGVGTHLSCTVEMCPGPGSVEYDVGVI 219
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDE---LHEQHYER 437
DE+Q++ D RG AWTRA+L L A EIHLCGD ++V + + + Y R
Sbjct: 220 DEVQLVGDRERGGAWTRAILALPAREIHLCGDGRATELVETLLGTYRPNDVVVRHKPYSR 279
Query: 438 FKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRR 497
PL + K + G R++R GDCVV FSR +I VK IE+ T CV+YG LPPETRR
Sbjct: 280 LSPLFLSGKAI-GSYRSLRKGDCVVVFSRWDIMRVKADIERSTRWRVCVVYGTLPPETRR 338
Query: 498 QQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGR 557
Q N FN Q EFDVLVASD +G+GLN NIRRV+F ++ KY+G + + ++ +QI GR
Sbjct: 339 DQINSFNRQ--EFDVLVASDCIGLGLNFNIRRVIFSTVHKYDGIETRQLLPTEFRQIGGR 396
Query: 558 AGRRG--SIYPDGLTTTLNLDDLDYL-----IECLKQPF--EVVKKVGLFPFFEQVELF- 607
AGR G + G+ ++ D L L +E + F EV ++ + Q L
Sbjct: 397 AGRYGLSAGAEGGVVACMHEDHLPALFAGFGLEWTEDTFEKEVPNQLIISDTVTQAALLP 456
Query: 608 -AGQLSNYTFCQLLEKFGENCRLDGSYF-----------LCR----HDHIKKVANMLEKV 651
+ LS + C+ GE C F +C + + +A L +
Sbjct: 457 ESSILSAF-HCEAAAALGEECLSAAKVFSTFADVAHTDPICYLGTWSNRMANIAKCLADI 515
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY--SKNAPVSIAMGMPKGSAKNDAELL 709
+ LS + FC APV+ DP + L FA S + P+ M + + +
Sbjct: 516 EELSFQQVVEFCSAPVDPNDPIVLSGLRTFAQSLVATNQVPLPDNMVFDAQTPTTVSAVF 575
Query: 710 DLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNA 757
LE Q+ +YLWL+ + V+ K+A ++ E ++TNA
Sbjct: 576 HLERICQIYDLYLWLARRSNPLVYRSEKEAREARAEVVE----AITNA 619
>gi|398022484|ref|XP_003864404.1| RNA helicase, putative [Leishmania donovani]
gi|322502639|emb|CBZ37722.1| RNA helicase, putative [Leishmania donovani]
Length = 687
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/557 (31%), Positives = 273/557 (49%), Gaps = 88/557 (15%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
+ KP W+P AR+M+R+ I+H GPTNSGKT+ AL+ M A+ G+YC+PL+ LA +V+ +V
Sbjct: 126 MHKPWDWYPHARLMRRRFIFHYGPTNSGKTHAALEALMRARSGVYCAPLKALASQVWHRV 185
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
V C LL G E+ + H++CTVEM D DV V+DEIQMM+D RG+AWTRA
Sbjct: 186 KE-RVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMMTDRDRGWAWTRA 244
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDE--LHEQHYERFKPLVVEAKTLLGDLR--N 454
LLGL A EIHLCG+ L +++ + T + L ++R PL V + +L LR
Sbjct: 245 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEHKRLVPLTV-SPSLRSRLRPET 303
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF---- 510
V +GDC V FS++++ +++ + + + IYGA+P + R +A FN E+
Sbjct: 304 VENGDCFVCFSKKQVLDLRDNLNRLSGVTSSAIYGAMPFQVREAEAARFNRGVTEYINAS 363
Query: 511 ------------------------------------DVLVASDAVGMGLNLNIRRVVFYS 534
VLV++DA+ GLN+NI R+VF +
Sbjct: 364 ASCSANAKNNAAGCSTTSSPGTRPRESSPETATPTKHVLVSTDAIAYGLNMNIERMVFTT 423
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVV 592
L K++G + +P + V+QIAGR+GR G + G T L+ D+ + E +
Sbjct: 424 LRKFDGKAMAELPAATVQQIAGRSGRFGLTRQHAVGRCTVLHERDMAAFRAAMSAQLEPL 483
Query: 593 KKVGLFPFFEQVELFAG--------------QLSNYTFCQLLEKFGENCRLDGSYFLCR- 637
K GL P + ++LFA LS +F +L+ F +C ++F C
Sbjct: 484 AKAGLLPTADILQLFAELESAKSRKAGKPTVDLSGGSFFELMSTFAASCVESHNFFPCDI 543
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV------ 691
H + +VA +LE V LSL DR FC+ P++ ++ ++ +A+ ++ PV
Sbjct: 544 HRSLLRVAELLEPVCNLSLTDRIVFCYLPLSDTSAASLQLIVAYATDHAAGKPVPLRFDV 603
Query: 692 ---------------SIAMGMPKGSAKNDAELLDLETK----HQVLSMYLWLSHQFKEEV 732
+ P + + DL T+ + MY WLS +F +
Sbjct: 604 WCTELMQRAEREETCGVGASSPGQRQQQQLSVRDLATELERCFRQAEMYCWLSWRFSKTF 663
Query: 733 FPYAKKAEAMATDIAEL 749
+ E A+ A L
Sbjct: 664 VERERGLELKASITAAL 680
>gi|117924245|ref|YP_864862.1| helicase domain-containing protein [Magnetococcus marinus MC-1]
gi|117608001|gb|ABK43456.1| helicase domain protein [Magnetococcus marinus MC-1]
Length = 789
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/480 (38%), Positives = 261/480 (54%), Gaps = 19/480 (3%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H FP AR R+ + GPTNSGKTY ALQR +A G Y +PLRLLA+EV D +N G
Sbjct: 258 HNLFP-ARENYRRFTLYLGPTNSGKTYQALQRLKDAATGCYLAPLRLLALEVADTLNEWG 316
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGL 402
V CS++TG+E+ LV + H A T+EM+ST YDVAVIDE QM+ DA RG+AWT+A+LG+
Sbjct: 317 VPCSMVTGEERILVQGAKHTASTIEMLSTHTRYDVAVIDEAQMVGDADRGWAWTQAILGV 376
Query: 403 MADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVV 462
A E+ + PS V+ K+ T + ER PL +K + L + G +V
Sbjct: 377 RAKEVCVIAAPSARPVIEKLLRLTEEPWDVVELERLTPLQTMSKPVEA-LAEMEPGTALV 435
Query: 463 AFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522
AFSR ++ +K +E+ T C +YGALPPE RR QA LFN E LVA+DA+GMG
Sbjct: 436 AFSRAQVLRLKAEVEQATGKKCAALYGALPPEVRRMQARLFN--SGEAPYLVATDAIGMG 493
Query: 523 LNLNIRRVVFYSLSKY-NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581
LNL I+ ++F K N + + P +V+QIAGRAGR G G T +
Sbjct: 494 LNLPIKTILFAQDRKMINRTEHLLTP-MEVRQIAGRAGRFGK-NEVGYVGTYRIGTAHIK 551
Query: 582 IECLKQPFEVVKKVGLFPFFEQVELFAGQL---SNYTFCQLLEKFGENCRLDGS-YFLCR 637
L PF+ VKK L P + + A QL +L F + + D + Y L
Sbjct: 552 QALLAVPFD-VKKAHLAPNLDHLTAIA-QLQEDQKLRLTRLFTLFIKTVKPDPALYELAD 609
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGM 697
D +A + ++ + L L RF APV +R + ++ +KN+P+++ +
Sbjct: 610 LDDQTTLARIADRHKQLDLPTRFMLSAAPVPLRATVVVTAFEHMVAAIAKNSPITLQDAL 669
Query: 698 PKGSAKNDA-ELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMA----TDIAELLGQ 752
P K D L+ LE +++++Y WL H +E++FP +AE + T+I LLG+
Sbjct: 670 PTPPHKADPNRLVKLEDAVKIVNLYCWL-HFRQEQLFPDLAEAEGLRAHLNTEINTLLGR 728
>gi|401428675|ref|XP_003878820.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495069|emb|CBZ30372.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 687
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/476 (34%), Positives = 257/476 (53%), Gaps = 63/476 (13%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
+ +P W+P AR+M+R+ I+H GPTNSGKT+ AL+ M+A+ G+YC+PL+ LA +V+ +V
Sbjct: 126 MHRPWDWYPQARLMRRRFIFHYGPTNSGKTHAALEALMQARSGVYCAPLKALAAQVWHRV 185
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
V C LL G E+ + H++CTVEM D DV V+DEIQMM+D RG+AWTRA
Sbjct: 186 KE-RVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMMADRDRGWAWTRA 244
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDE--LHEQHYERFKPLVVEAKTLLGDLR--N 454
LLGL A EIHLCG+ L +++ + T + L ++R PLVV + +L LR
Sbjct: 245 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEHKRLVPLVV-SPSLCSRLRLET 303
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF---- 510
V +GDC V FS++++ +++ + + IYGA+P + R +A FN E+
Sbjct: 304 VENGDCFVCFSKKQVLDLQDNLNRLPGVTSSAIYGAMPFQVREAEAARFNRGVTEYINAF 363
Query: 511 ------------------------------------DVLVASDAVGMGLNLNIRRVVFYS 534
VLV++DA+ GLN+NI RVVF +
Sbjct: 364 ASCSANAKNNAADCSTTSPRGTQPRESSPETATPTKHVLVSTDAIAYGLNMNIERVVFTT 423
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVV 592
L K++G ++ +P + V+QIAGR+GR G + G T L+ D+ + E +
Sbjct: 424 LRKFDGKGMVELPAATVQQIAGRSGRFGLTRQHTVGRCTVLHECDMTAFSVAMSTQLEPL 483
Query: 593 KKVGLFPFFEQVELF----------AGQ----LSNYTFCQLLEKFGENCRLDGSYFLCR- 637
K GL P + ++LF AG+ S+ +F +L+ +F +C ++F C
Sbjct: 484 AKAGLLPTGDILQLFAELESAKARKAGKPTLGPSDGSFFELMSRFAASCAGSQNFFPCDI 543
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI 693
H + ++A +LE V+ LSL DR FC+ P++ ++ ++ +A+ ++ PV +
Sbjct: 544 HRSLLRLAELLEPVRDLSLTDRIVFCYLPLSDTSAASLQLIVAYATDHAAGKPVPL 599
>gi|401885058|gb|EJT49189.1| RNA helicase like protein [Trichosporon asahii var. asahii CBS
2479]
Length = 772
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 184/527 (34%), Positives = 262/527 (49%), Gaps = 56/527 (10%)
Query: 269 RFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLR 328
R RA+++ D++ AR M R H GPTNSGKTY+AL+ +AK G+Y PLR
Sbjct: 189 RLRALLQITDISNVAQTHVAARSMNRNFHLHMGPTNSGKTYSALKALSKAKTGVYAGPLR 248
Query: 329 LLAMEVFDKVN--------ALGVYCSLLTGQEKKLVPF-SNHIACTVEMVSTD-----EM 374
LLA EV++++N G C+LLTG+E++LV + ++CTVEM+ E
Sbjct: 249 LLAHEVWERINLGTVGGMDGEGRACNLLTGEERRLVAQDAGLMSCTVEMMPLQGFMGGEP 308
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK-ICSETGDELHEQ 433
+DV VIDEIQM+ D+ RG AW A++G+ A EIHLCGD + ++ + I GD L
Sbjct: 309 WDVVVIDEIQMLGDSERGAAWANAVMGVAAKEIHLCGDETTEKLLHEMIAGFKGDTLTVH 368
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
Y R PL + K+L D++ V++GDCVV FSR +F +K IE+ V+YGALPP
Sbjct: 369 KYSRLTPLKIADKSLHSDMKKVQAGDCVVTFSRSNVFALKNQIERQLGTKAAVVYGALPP 428
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQ 553
ETR +QA FN + VLVASDAVGMGLNL I R++F +L K+NG + P +
Sbjct: 429 ETRAEQARDFN--EGRAQVLVASDAVGMGLNLKINRIIFETLWKWNGSRRCPFDTATTGD 486
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
G G G TTL+ DD L L + VK+ + P E + L
Sbjct: 487 APGDTG--------GTVTTLHEDDFALLKSLLGRTLPSVKRAVIEPPSEALTALQPLLPA 538
Query: 614 YT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG-LSLEDRFNFCFAPVNIRD 671
T F L+E F +L L +A +LE + L+L + AP+ RD
Sbjct: 539 KTSFESLIEHFWALAKLPPRTVLASSTSKTTIAPILEPFRNILTLSELQLLANAPLPARD 598
Query: 672 PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELL---------------------- 709
K + Y+K V + + + N +++
Sbjct: 599 EKTVRFFSTMVWQYAKEYHVDLHAAIQRTGLLNSLDVIEKLMAKLDGPPKVPPQSHERRV 658
Query: 710 ------DLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELL 750
+LE+ H+ L YLWLS +F E FP + A M + ++L
Sbjct: 659 LIQKVPELESLHKCLVNYLWLSFRF-ELAFPDRELAAEMKSRTEKML 704
>gi|300855087|ref|YP_003780071.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300435202|gb|ADK14969.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 585
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 170/460 (36%), Positives = 254/460 (55%), Gaps = 44/460 (9%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R MKRK H G TN+GKTYNA++R AKKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYIETRHMKRKFYIHLGDTNTGKTYNAVERLKTAKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C LLTG+E+ L S HI+CT+E ++ E YD+AVIDEIQM+SD RG AW+RALLG
Sbjct: 190 GIICDLLTGEEEVLKIGSTHISCTIEKLNLKEHYDIAVIDEIQMISDKQRGMAWSRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L DEIH+CG + D+++ I ++ DE + Y+R PL VE K D +++ GD V
Sbjct: 250 LKCDEIHICGALNAKDIIKTIINDCEDEYEIKEYKRSIPLEVENKKFNYD--DIKEGDAV 307
Query: 462 VAFSRREIFEVKMAIEKHTNH--HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
V FS++ + E+ +++++ +IYG LPPE R+ Q F ++ E VLV +DA+
Sbjct: 308 VVFSKKRVLEIA---QRYSSKGIKASMIYGDLPPEVRKMQYEQFTNK--ETKVLVTTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMG+NL IRR++F ++ K++G+++ + +VKQ++GRAGR G IY G + D D
Sbjct: 363 GMGVNLPIRRIIFINIKKFDGEEVRELTSQEVKQVSGRAGRIG-IYDIGYVASAG-DTQD 420
Query: 580 YLIECLKQ-----------PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
++ L+ P + + K+ P E++ L+ + EK +
Sbjct: 421 FIKSKLEAGDEKIKRAVIGPSDAILKIKSLPLNEKLALWGTR---------EEKLDYYTK 471
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
+D S ++ D IKK L ED++N P ++ M L + N
Sbjct: 472 MDISEYILILDKIKKYK--------LKEEDQWNLLKVPFDVSREDLMNGFLEYVDELFIN 523
Query: 689 APVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
S + P+ N L DLE +Q ++MY S F
Sbjct: 524 KQDS--LFKPQCFVGN---LDDLEIYYQKINMYYSFSKIF 558
>gi|156087308|ref|XP_001611061.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
gi|154798314|gb|EDO07493.1| ATP-dependent RNA helicase, putative [Babesia bovis]
Length = 678
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 181/550 (32%), Positives = 280/550 (50%), Gaps = 39/550 (7%)
Query: 245 DDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTN 304
D + L P ++ E P F ADLT+P + R +RK+I H GP N
Sbjct: 120 DSTCETLTPYLSQYMQNELPRATLAFHGAKHLADLTRPLEGYQ-PRSFRRKVIAHLGPPN 178
Query: 305 SGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIAC 364
SGKTY A R + AK G+YC+PLRLLA E+ ++ G+ CSLLTGQ+ + H+AC
Sbjct: 179 SGKTYEAHLRLLGAKSGVYCAPLRLLAWEMQQRLQDEGIQCSLLTGQDVSITTKDTHMAC 238
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
TVEM + Y AVIDE+QM+ D+ RG+AWTRA LGL E+H+CG S + + C+
Sbjct: 239 TVEMTQLNRDYGCAVIDEMQMIGDSNRGFAWTRAFLGLRTPELHICGSTSCYLLAKSFCN 298
Query: 425 ETGDELHEQHYERFKPL-VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHH 483
GD L + + R + +++ + DL GDC+V F+R + AIE+ +
Sbjct: 299 MAGDLLEVKEHTRLGTVSILDEPVKISDL---LPGDCIVCFARNTALRIATAIERQCFKN 355
Query: 484 -------CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
VIYG+LPPETR+QQ N FN + + +LVASD +GMG+N+ I+RV+F+SL+
Sbjct: 356 DGSKPASTVVIYGSLPPETRKQQINDFNSRKKQ--ILVASDVIGMGVNVRIKRVIFHSLT 413
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVG 596
KY+G + + ++V+QIAGRAGR +G DD+ +L +++ + ++
Sbjct: 414 KYDGSRYRMLTAAEVQQIAGRAGRYSLNCGNGYVGCTREDDIVHLKRLMRRKEDQLESAY 473
Query: 597 LFPFFEQVELFAGQLSNY-----TFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
+ P + + F + T + ++ + + + L I KVAN L ++
Sbjct: 474 IAPSTDTLSAFIDAVRGVTDPPGTLSECIKIYRSMAQSTQMFKLLDMKSILKVANALSQI 533
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS-------KNAPVSIAMGMPKG---- 700
+ L + F P+ P L FA S+S +N AM + +
Sbjct: 534 E-LPTRTIVEYLFVPLG-SQPALQLILRTFALSHSVVNNVKLRNVIHEDAMELLENCENF 591
Query: 701 SAKNDAE-LLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEA---MATDIAELLGQSLT- 755
+ +N E + LE +Q+L Y+WL ++F + + A +A + E L QSL
Sbjct: 592 TVQNIKEHIRQLEMLYQILDAYVWLGYKFPDVYVDHVAAASVKGKIARTLHERLEQSLAS 651
Query: 756 --NANWKPES 763
N + PE+
Sbjct: 652 GDNMDGIPET 661
>gi|146099298|ref|XP_001468607.1| putative RNA helicase [Leishmania infantum JPCM5]
gi|134072975|emb|CAM71694.1| putative RNA helicase [Leishmania infantum JPCM5]
Length = 687
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 176/557 (31%), Positives = 273/557 (49%), Gaps = 88/557 (15%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
+ KP W+P AR+M+R+ I+H GPTNSGKT+ AL+ M A+ G+YC+PL+ LA +V+ +V
Sbjct: 126 MHKPWDWYPHARLMRRRFIFHYGPTNSGKTHAALEALMRARSGVYCAPLKALASQVWHRV 185
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
V C LL G E+ + H++CTVEM D DV V+DEIQMM+D RG+AWTRA
Sbjct: 186 KE-RVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMMTDRDRGWAWTRA 244
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDE--LHEQHYERFKPLVVEAKTLLGDLR--N 454
LLGL A EIHLCG+ L +++ + T + L ++R PL V + +L LR
Sbjct: 245 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEHKRLVPLTV-SPSLRSRLRPET 303
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF---- 510
V +GDC V FS++++ +++ + + + IYGA+P + R +A FN E+
Sbjct: 304 VENGDCFVCFSKKQVLDLRDNLNRLSGVTSSAIYGAMPFQVREAEAARFNRGVTEYINAS 363
Query: 511 ------------------------------------DVLVASDAVGMGLNLNIRRVVFYS 534
VLV++DA+ GLN+NI R+VF +
Sbjct: 364 ASCSANAKNNAAGCSTTSSPGTRPRESSPETATPTKHVLVSTDAIAYGLNMNIERMVFTT 423
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVV 592
L K++G + +P + V+QIAGR+GR G + G T L+ D+ + E +
Sbjct: 424 LRKFDGKAMAELPAATVQQIAGRSGRFGLTRQHAVGRCTVLHECDMAAFRAAMSAQLEPL 483
Query: 593 KKVGLFPFFEQVELFAG--------------QLSNYTFCQLLEKFGENCRLDGSYFLCR- 637
K GL P + ++LFA LS +F +L+ F +C ++F C
Sbjct: 484 AKAGLLPTGDILQLFAELESAKSRKAGKPTLDLSGGSFFELMSTFAASCVESHNFFPCDI 543
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV------ 691
H + +VA +LE V LSL DR FC+ P++ ++ ++ +A+ ++ PV
Sbjct: 544 HRSLLRVAELLEPVCNLSLTDRIVFCYLPLSDTSAASLQLIVAYATDHAAGKPVPLRFDV 603
Query: 692 ---------------SIAMGMPKGSAKNDAELLDLETK----HQVLSMYLWLSHQFKEEV 732
+ P + + DL T+ + MY WLS +F +
Sbjct: 604 WCTELMQRAEREETCGVGASSPGQRQQQQLSVRDLATELERCFRQAEMYCWLSWRFSKTF 663
Query: 733 FPYAKKAEAMATDIAEL 749
+ E A+ A L
Sbjct: 664 VERERGLELKASITAAL 680
>gi|209542618|ref|YP_002274847.1| helicase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530295|gb|ACI50232.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 815
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 175/496 (35%), Positives = 270/496 (54%), Gaps = 21/496 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK++ AL+ A+ G+ +PLRLLA E + + A GV
Sbjct: 298 FKTARALKRRITLVTGPTNSGKSHTALEALARAESGMALAPLRLLAHEFREALTARGVPT 357
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +P S H+A TVEM DVA+IDE QM+SD RG AWT A++G A
Sbjct: 358 SLATGEERIDIPGSRHLAATVEMCPLHNPVDVAMIDEAQMLSDPDRGAAWTAAIMGAPAR 417
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +VR+I GD L E H ER PLV ++ + L++++ D ++AFS
Sbjct: 418 HLFVLGAPDCIPMVRRIAELCGDPLDEVHLERKGPLVTASEPV--RLQDLKPHDALIAFS 475
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ V+YGAL PE RR +A FN D E D+L+A+DA+GMGLNL
Sbjct: 476 RREVLDLRAALLAR-GRRVAVVYGALSPEVRRAEAQRFN--DGEADILIATDAIGMGLNL 532
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
IRRV+F +L K++G + + +VKQI GRAGR G + G+ L I +
Sbjct: 533 TIRRVIFTALRKFDGTQTRDLNAQEVKQIGGRAGRYGK-HEQGVVAVLAGAGSASFIRAM 591
Query: 586 --KQPFEVVK-KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHDH 640
P E+ + + P + ++ A ++ + + +L + D +Y L +
Sbjct: 592 MAAPPAELADLRPQVQPDADIIQAVAAEIGSESLFGVLARIRRAVLRPDDPNYRLANMEQ 651
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKG 700
+A LE V GLSL R+ + PV+ RD + L+ +A+ ++ PV + G +
Sbjct: 652 AFAIATALEGVSGLSLAQRWVYAMCPVDDRD-NGIQRLIHWAADHAAGRPV-VPPGPGRL 709
Query: 701 SAKNDAELLDL---ETKHQVLSMYLWLSHQFKEEVFPY---AKKAEAMATD-IAELLGQS 753
+ AE ++L E +H+ L + WLS +F + +P A+ A A D I ++L Q
Sbjct: 710 PPPDRAERIELERAEKRHKRLVAWRWLSLRFP-DAYPAREDAEDATARLNDWIEDVLRQQ 768
Query: 754 LTNANWKPESRQAGKP 769
+ + E + G+P
Sbjct: 769 SSRSRAGGEEPRPGQP 784
>gi|162148002|ref|YP_001602463.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786579|emb|CAP56161.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
Length = 821
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 256/463 (55%), Gaps = 17/463 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK++ AL+ A+ G+ +PLRLLA E + + A GV
Sbjct: 304 FKTARALKRRITLVTGPTNSGKSHTALEALARAESGMALAPLRLLAHEFREALTARGVPT 363
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +P S H+A TVEM DVA+IDE QM+SD RG AWT A++G A
Sbjct: 364 SLATGEERIDIPGSRHLAATVEMCPLHNPVDVAMIDEAQMLSDPDRGAAWTAAIMGAPAR 423
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +VR+I GD L E H ER PLV ++ + L++++ D ++AFS
Sbjct: 424 HLFVLGAPDCIPMVRRIAELCGDPLDEVHLERKGPLVTASEPV--RLQDLKPHDALIAFS 481
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ V+YGAL PE RR +A FN D E D+L+A+DA+GMGLNL
Sbjct: 482 RREVLDLRAALLAR-GRRVAVVYGALSPEVRRAEAQRFN--DGEADILIATDAIGMGLNL 538
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
IRRV+F +L K++G + + +VKQI GRAGR G + G+ L I +
Sbjct: 539 TIRRVIFTALRKFDGTQTRDLNAQEVKQIGGRAGRYGK-HEQGVVAVLAGAGSASFIRAM 597
Query: 586 --KQPFEVVK-KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHDH 640
P E+ + + P + ++ A ++ + + +L + D +Y L +
Sbjct: 598 MAAPPAELADLRPQVQPDADIIQAVAAEIGSESLFGVLARIRRAVLRPDDPNYRLANMEQ 657
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKG 700
+A LE V GLSL R+ + PV+ RD + L+ +A+ ++ PV + G +
Sbjct: 658 AFAIATALEGVSGLSLAQRWVYAMCPVDDRD-NGIQRLIHWAADHAAGRPV-VPPGPGRL 715
Query: 701 SAKNDAELLDL---ETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
+ AE ++L E +H+ L + WLS +F + +P + AE
Sbjct: 716 PPPDRAERIELERAEKRHKRLVAWRWLSLRFP-DAYPAREDAE 757
>gi|428673345|gb|EKX74258.1| ATP-dependent RNA and DNA helicase, putative [Babesia equi]
Length = 691
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 174/524 (33%), Positives = 271/524 (51%), Gaps = 33/524 (6%)
Query: 257 EFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFM 316
+F P + + M AD+ P F ++ R +I H GP NSGKT++A +R
Sbjct: 137 DFARLHMPQLLITYNNMKHLADIRHPELEFSGEKLSCRHVILHVGPPNSGKTHDAYRRLE 196
Query: 317 EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYD 376
+ GIYCSPLRLLA E+ +K+N V C+LLTGQE+ + H++CTVEM + +YD
Sbjct: 197 CSSTGIYCSPLRLLAWEIQNKLNKSNVSCALLTGQERVINDTETHLSCTVEMAPLNNIYD 256
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE 436
A++DE+QM+ D RGYAWTRA LGL A E+H+CG+ S L + RK+ +GD L + +
Sbjct: 257 CAIVDEMQMIGDPVRGYAWTRAFLGLKAKEVHVCGNESCLPLARKLVDISGDTLEIKRHA 316
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK-----HTNHH--CCVIYG 489
R LV+ K LL + ++ GDCVV FSR ++F ++ IE T H ++YG
Sbjct: 317 RLSNLVILDKELL--IEELKPGDCVVCFSRFDVFSLRNKIESTKYNWDTMDHSKTSIVYG 374
Query: 490 ALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGS 549
+LPPE R Q FN++ + +L++SDA+GMG+N+ IRR++F+SL KY+G++ + S
Sbjct: 375 SLPPEVRCDQIQKFNERKAK--ILISSDAIGMGVNVRIRRIIFHSLKKYDGNEKRTLNIS 432
Query: 550 QVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAG 609
+V+QIAGRAGR G L D L + + P + K + P + F+
Sbjct: 433 EVQQIAGRAGRYSMSCGHGEVGCLQERDTMLLKKLMVSPQPPIDKAIIAPSTSVISAFST 492
Query: 610 QLSNY----TFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFA 665
++N F ++ + + +C + ++A +L ++ L + + F
Sbjct: 493 SVTNVAGNTNFSDSIKLLFSMVKTGEIFEVCDFAPLNRIARVLRAIE-LPISTLVEYIFV 551
Query: 666 PVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKND---------------AELLD 710
P+ + L FA S+S V + + S +D
Sbjct: 552 PLGTGMLPILV-LRTFAISHSILNSVKLNNIFTEESLSDDKFYSVEHNKHAEDAYTHFKT 610
Query: 711 LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
LE +Q L +YLWLS +F +V+ A + T IA + + L
Sbjct: 611 LELLYQTLEIYLWLSIKFP-KVYVDKDAAAVIKTKIANAMSKYL 653
>gi|393760256|ref|ZP_10349068.1| helicase domain-containing protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162068|gb|EJC62130.1| helicase domain-containing protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 1066
Score = 275 bits (703), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 162/470 (34%), Positives = 252/470 (53%), Gaps = 29/470 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR ++R +++ GPTNSGKT+ AL+ MEA+ G+Y +PLRLLAMEV D++ G+ C
Sbjct: 556 FSLARGIRRHLVFRLGPTNSGKTHEALEALMEARSGVYLAPLRLLAMEVRDRLMNAGIPC 615
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L+TG+E+ +VP + H ACTVEM+ VAV+DEIQM+ D RG+AWT AL+G+ A
Sbjct: 616 NLVTGEERVMVPGAQHTACTVEMMDPTMEVRVAVLDEIQMLQDEQRGWAWTAALVGVPAR 675
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-----VVEAKTLLG---------- 450
+ +CGD SVL ++ + + + ER PL VE G
Sbjct: 676 TLFVCGDASVLRPCERLVRSMEETMELEFTERKTPLEVMPYPVEPPPATGRQGRQPAAWR 735
Query: 451 -------DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLF 503
+ + V GD VVAF+R+++ + A + IYGAL PE RR ++ F
Sbjct: 736 GRKDRQREAQGVSKGDAVVAFTRKDVLTLS-ARYRAQGWKVATIYGALAPEVRRTESERF 794
Query: 504 NDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563
+ E DVLVA+DA+GMGLNL IRRV+F ++ K++G + + ++++QIAGRAGR G
Sbjct: 795 S--QGEADVLVATDAIGMGLNLPIRRVLFSTVHKFDGRSMRVLNATEIRQIAGRAGRYG- 851
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVK-KVGLFPFFEQVELFAGQLSNYTFCQLLEK 622
+YP G ++ DL+++ L+ V ++ + P E V+ A L N +L+
Sbjct: 852 LYPKGYVGAMDKQDLNHIRTQLQTEAPSVDLRLPIAPSPEHVQALAALLDNNNIGAVLQY 911
Query: 623 FGENCRLDGSYFLCR--HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
F + D F D I+ + L L ++F F APV++ + + R
Sbjct: 912 FAQKVASDSPLFQTAGLKDAIELGFWVDRLAPKLELREKFTFACAPVSVDKDTELDYFKR 971
Query: 681 FASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
S+Y P+++ + + + L D E + +S+Y W S +F +
Sbjct: 972 CLSAYVAQRPMALPPAPSWLKSASPSRLEDAELLSKQISLYAWFSMKFPQ 1021
>gi|157876001|ref|XP_001686365.1| putative RNA helicase [Leishmania major strain Friedlin]
gi|68129439|emb|CAJ07982.1| putative RNA helicase [Leishmania major strain Friedlin]
Length = 655
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 252/476 (52%), Gaps = 63/476 (13%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
+ KP W+P AR+M+R+ I+H GPTNSGKT+ AL+ + A+ G+YC+PL+ LA +V+ +V
Sbjct: 93 MHKPWDWYPQARLMRRRFIFHYGPTNSGKTHAALEALVRARSGVYCAPLKALAAQVWHRV 152
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
V C LL G E+ + H++CTVEM D DV V+DEIQM++D RG+AWTRA
Sbjct: 153 KE-RVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMIADRDRGWAWTRA 211
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDE--LHEQHYERFKPLVVEAKTLLGDLR--N 454
LLGL A EIHLCG+ L +++ + T + L ++R PL V + +L LR
Sbjct: 212 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEHKRLVPLAV-SPSLRSRLRPET 270
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF---- 510
V +GDC V FS++++ ++ + + IYGA+P + R +A FN ++
Sbjct: 271 VENGDCFVCFSKKQVLSLRDNLNRLPGVKSFAIYGAMPFQVREAEAARFNRGVTDYINAS 330
Query: 511 ------------------------------------DVLVASDAVGMGLNLNIRRVVFYS 534
VLV++DA+ GLN+NI R+VF +
Sbjct: 331 TSCSANAKNNTAGCSTTSPPGTRPRESSPETATPTKHVLVSTDAIAYGLNMNIERMVFTT 390
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVV 592
L K++G ++ +P + V+QIAGR+GR G + G T L+ D+ + E +
Sbjct: 391 LRKFDGKGMVELPAATVQQIAGRSGRFGLTRQHAVGRCTVLHESDMAAFGAAMSAQPEPL 450
Query: 593 KKVGLFPFFEQVELFAG--------------QLSNYTFCQLLEKFGENCRLDGSYFLCR- 637
K GL P + ++LFA LS +F +L+ +F +C ++F C
Sbjct: 451 AKAGLLPTGDILQLFAELESAKSRKASTPTLDLSGGSFFELMSRFAASCAESQNFFPCDI 510
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI 693
H + +VA +LE V+ LSL DR FC+ P++ ++ ++ +A+ ++ PV +
Sbjct: 511 HRSLLRVAELLEPVRNLSLTDRIMFCYLPLSDMSAASLQLIVAYATDHAAGKPVPL 566
>gi|410728685|ref|ZP_11366799.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410596687|gb|EKQ51346.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 585
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 225/374 (60%), Gaps = 29/374 (7%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P +P AR MKRK H G TN+GKTYNAL+R AKKG+Y SPLR+LA+E ++K+N
Sbjct: 130 PKDEYPAARSMKRKFYIHLGDTNTGKTYNALERLKRAKKGVYLSPLRILALENYEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C L TG+E+ + + HI+CT+E V+ E YD+AVIDEIQM+SD RG AW++A+LG
Sbjct: 190 GVICDLQTGEEEIINVGATHISCTIEKVNLKEHYDIAVIDEIQMISDTFRGMAWSKAVLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L DEIH+CG + ++ I ++ DE + Y+R PL VE K NV+ GD +
Sbjct: 250 LQCDEIHICGAANAKFILETIINDCKDEYEIKEYKRAIPLEVEFKNF--SYGNVQEGDAI 307
Query: 462 VAFSRREIFEVKMAIEKHTNH--HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
V FS++ + E+ E+++ +IYG LPPE R+ Q F ++ E +LV +DA+
Sbjct: 308 VVFSKKRVLEIA---EEYSGRGIKASIIYGDLPPEVRKMQYEQFVNK--ETKILVTTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL--NLD- 576
GMG+NL IRR++F S+ K++G+++ + +VKQ+ GRAGR G IY G ++ N D
Sbjct: 363 GMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQVGGRAGRLG-IYDVGYIASVGGNADI 421
Query: 577 ---DLDYLIECLKQ----PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
LD E +KQ P EV+ K+ P E++ L++ + EK ++
Sbjct: 422 IKSKLDTKDETIKQAVIGPSEVILKIRSLPLDEKLALWSTR---------EEKLDYYTKM 472
Query: 630 DGSYFLCRHDHIKK 643
D S ++ D IKK
Sbjct: 473 DVSEYILILDRIKK 486
>gi|150017290|ref|YP_001309544.1| helicase domain-containing protein [Clostridium beijerinckii NCIMB
8052]
gi|149903755|gb|ABR34588.1| helicase domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 585
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 168/459 (36%), Positives = 250/459 (54%), Gaps = 38/459 (8%)
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
+ P + AR MKRK H G TN+GKTYNAL+R AKKG+Y SPLR+LA+E F+K+N
Sbjct: 128 SNPKDEYRQARSMKRKFYIHLGDTNTGKTYNALERLKSAKKGVYLSPLRILALENFEKLN 187
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
GV C LLTG+E+ + S H +CT+E V+ E YD+AVIDEIQM+SD RG AW++AL
Sbjct: 188 REGVICDLLTGEEEIINVGSTHTSCTIEKVNLKEHYDIAVIDEIQMISDPFRGMAWSKAL 247
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL DEIH+CG + ++ I S+ DE + Y R PL VE K +V+ GD
Sbjct: 248 LGLQCDEIHICGAANAKYILETIISDCKDEYEIREYTRAIPLEVEYKNF--SYNDVQEGD 305
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
VV FS++ + E+ N +IYG LPPE R+ Q F ++ E +LV +DA+
Sbjct: 306 AVVVFSKKRVLEIAEEYSSR-NIKASIIYGDLPPEVRKMQYEQFINK--ETKILVTTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL--NLD- 576
GMG+NL IRR++F S+ K++G+++ + ++KQ+ GRAGR G IY G ++ N D
Sbjct: 363 GMGVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQVGGRAGRLG-IYDVGYIASVGGNADI 421
Query: 577 ---DLDYLIECLKQ----PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
L+ E +KQ P E + K+ P E++ L++ + EK ++
Sbjct: 422 IKSKLETEDEVIKQAVIGPSEAILKIRSLPLNEKLALWSTR---------TEKLDYYTKM 472
Query: 630 DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA 689
D S ++ D ++K L+ E +++ P ++ + M L + N
Sbjct: 473 DVSEYILILDRLRKYK--------LNEEIQWDLLKVPFDVSRDELMNAFLNYVDELFVNK 524
Query: 690 PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ P+ + L DLE +Q ++MY S F
Sbjct: 525 QKELF--KPQNF---NGGLDDLEIYYQKINMYYSFSKIF 558
>gi|402225788|gb|EJU05849.1| P-loop containing nucleoside triphosphate hydrolase protein,
partial [Dacryopinax sp. DJM-731 SS1]
Length = 281
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 184/270 (68%), Gaps = 6/270 (2%)
Query: 299 HCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN-----ALGVYCSLLTGQEK 353
H GPTNSGKT+ ALQ + A+ G+Y PLRLLA E++ +VN L C+LLTG+E+
Sbjct: 2 HVGPTNSGKTHQALQALVRARTGVYAGPLRLLAHEIWKRVNTGQIDGLARTCNLLTGEEQ 61
Query: 354 KLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGD 412
+ V ++H+ACTVEM DV V+DEIQ+++D RG +W + LLG A E+H+CG+
Sbjct: 62 RWVGERASHLACTVEMTPCGTELDVVVLDEIQLLADPDRGSSWMQVLLGANAQEVHVCGE 121
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
+ + +V++I E GD + + YER PL + ++L GDL ++ GD +VAF+R IF++
Sbjct: 122 DTAVGLVQRIAEECGDVVEVRRYERLTPLKMAKQSLNGDLTKIQPGDAIVAFNRNHIFQI 181
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + T H + YGA+PPE R QQA +FND + +VLVASDA+GMGLNL I+RV+F
Sbjct: 182 AKQVTEKTGHATALAYGAMPPEVRNQQARIFNDPGSSLNVLVASDAIGMGLNLKIKRVIF 241
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
+ ++K+NG +++ + SQ KQIAGRAGR G
Sbjct: 242 HRMTKWNGTEVVELSPSQAKQIAGRAGRFG 271
>gi|253998438|ref|YP_003050501.1| helicase domain-containing protein [Methylovorus glucosetrophus
SIP3-4]
gi|253985117|gb|ACT49974.1| helicase domain protein [Methylovorus glucosetrophus SIP3-4]
Length = 497
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 250/458 (54%), Gaps = 14/458 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR M+R ++ GPTNSGKTY ALQ +A G+Y +PLRLLAMEV D++ GV C
Sbjct: 8 FPVARGMRRHFHFYLGPTNSGKTYEALQVLQQAASGVYLAPLRLLAMEVRDRLMEAGVPC 67
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L+TG+E+ VP + H ACTVEM+ D++ DVAVIDEIQM+ D RGYAWT AL+G+ A
Sbjct: 68 NLVTGEERHWVPGARHTACTVEMMRPDQVVDVAVIDEIQMLQDEARGYAWTAALVGVPAQ 127
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN-------VRSG 458
++ +CG +V + + + ER PL++E + G+ N ++ G
Sbjct: 128 QVFVCGSDAVTPICLALLESLNEPWQLTRLERKTPLILEEHAICGERYNRARLKGKLQKG 187
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
D V+AF+R+++ + I + IYGAL PE RR ++ F E DVLVA+DA
Sbjct: 188 DAVIAFTRKDVLTLSARI-RQWGLSVASIYGALSPEVRRTESRRFA--SGEADVLVATDA 244
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578
+GMGLNL IRRVVF ++ K++G + ++ +QIAGRAGR G IYP G + D+L
Sbjct: 245 IGMGLNLPIRRVVFTTVHKFDGVASRLIGPTETRQIAGRAGRYG-IYPTGFVAAVEADEL 303
Query: 579 DYLIECLKQPFEV-VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
+L L ++++ + + + + ++ +LLE+F + L
Sbjct: 304 LHLQHMLTTSDSAELQQLPVAANWPDIARLSQRVHTARIGELLERFSRQALESDLFHLTS 363
Query: 638 HDHIKKVANML-EKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + +++ ++ + L D+F F APV+ M + ++ +++ + +
Sbjct: 364 AEGQIALGHLIDQQAPHMPLADKFRFSCAPVSFDKRHEMDYFIQCLKAHADHKRRRLPED 423
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
+ + L E Q +S+Y WL+ ++ + FP
Sbjct: 424 VAWLDSSGPQYLEQAEQFSQDISLYAWLAFKYP-QTFP 460
>gi|313200515|ref|YP_004039173.1| helicase domain-containing protein [Methylovorus sp. MP688]
gi|312439831|gb|ADQ83937.1| helicase domain protein [Methylovorus sp. MP688]
Length = 502
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 249/458 (54%), Gaps = 14/458 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR M+R ++ GPTNSGKTY ALQ +A G+Y +PLRLLAMEV D++ GV C
Sbjct: 13 FPVARGMRRHFHFYLGPTNSGKTYEALQVLQQAASGVYLAPLRLLAMEVRDRLMEAGVPC 72
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L+TG+E+ VP + H ACTVEM+ D++ DVAVIDEIQM+ D RGYAWT AL+G+ A
Sbjct: 73 NLVTGEERHWVPGARHTACTVEMMRPDQVVDVAVIDEIQMLQDEARGYAWTAALVGVPAQ 132
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN-------VRSG 458
++ +CG +V + + + ER PL++E + G+ N ++ G
Sbjct: 133 QVFVCGSDAVTPICLALLESLDEPWQLTRLERKTPLILEEHAICGERYNRARLKGKLQKG 192
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
D V+AF+R+++ + I + IYGAL PE RR ++ F E DVLVA+DA
Sbjct: 193 DAVIAFTRKDVLTLSARI-RQWGLSVASIYGALSPEVRRTESRRFA--SGEADVLVATDA 249
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578
+GMGLNL IRRVVF ++ K++G + ++ +QIAGRAGR G IYP G + D+L
Sbjct: 250 IGMGLNLPIRRVVFTTVHKFDGVASRLIGPTETRQIAGRAGRYG-IYPTGFVAAVEADEL 308
Query: 579 DYLIECLKQPFEV-VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
+L L ++++ + + + + ++ +LLE F + L
Sbjct: 309 LHLQHMLTTSDSAELQQLPVAANWPDIARLSQRVHTARIGELLESFSRQALESDLFHLTS 368
Query: 638 HDHIKKVANML-EKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
+ + +++ ++ + L D+F F APV+ M + ++ +++ + +
Sbjct: 369 AEGQIALGHLIDQQAPHMPLADKFRFSCAPVSFDKRHEMDYFIQCLKAHAAHKRRRLPED 428
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
+ + L E Q +S+Y WL+ ++ + FP
Sbjct: 429 VAWLDSSGPQYLEPAEQFSQDISLYAWLAFKYP-QTFP 465
>gi|422346769|ref|ZP_16427683.1| hypothetical protein HMPREF9476_01756 [Clostridium perfringens
WAL-14572]
gi|373226314|gb|EHP48641.1| hypothetical protein HMPREF9476_01756 [Clostridium perfringens
WAL-14572]
Length = 585
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 259/462 (56%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R +KRK H G TN+GKTY A+QR E +KG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ L + H++CT+E + E YDVAVIDEIQM+ D+ RGYAWTRALLG
Sbjct: 190 GVKCNLLTGEEEILFEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++++I + GD+ Y R PL+VE ++ +NV+ GD +
Sbjct: 250 LYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESF--HPKNVQEGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ +M I+ C +IYG LPPE R++Q F N+ +L+ +
Sbjct: 308 VLFSKKKVLQMAEQYSQMGIK------CSIIYGDLPPEVRKKQYEEFITGKNK--ILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMG+NL I+R++F S+SK++G+++ + +VKQIAGRAGR+G IY G T +
Sbjct: 360 DAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKG-IYDTGYVATYRDN 418
Query: 577 D---------LDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
D I+ + P + + ++ P E++ L++ + + +
Sbjct: 419 KEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSAKKCEVPYYR-------- 470
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L + +K +LE++Q + P +I M L F
Sbjct: 471 -KMDISEYLIILERLKSYK-LLEEIQ-------WELLKIPFDISKDDLMNQFLNFVDQLF 521
Query: 687 KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
N + P+ + L DLET +Q+++MY S +F
Sbjct: 522 INDQEELF--KPQCYS---GTLYDLETYYQMVNMYYSFSKRF 558
>gi|354593623|ref|ZP_09011666.1| helicase Domain-Containing Protein [Commensalibacter intestini
A911]
gi|353672734|gb|EHD14430.1| helicase Domain-Containing Protein [Commensalibacter intestini
A911]
Length = 775
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 262/485 (54%), Gaps = 17/485 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK+Y AL+ E++ GI +PLRLLA E + +N +
Sbjct: 299 FVTARSLKRRITIVTGPTNSGKSYTALKTMAESESGIALAPLRLLAHEFREALNERDIAT 358
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E++L+P S +A TVEM D DVA+IDE QM++D RG AWT A++G+ A
Sbjct: 359 SLKTGEERQLIPNSKFLAATVEMCPMDNPVDVALIDEAQMLTDPDRGAAWTAAIMGVPAR 418
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +V+ I D E +R L + + L + SGD ++AFS
Sbjct: 419 HVFVLGSPECIPLVKNIARLCDDPWEEISLQRKSVLQTASSPI--RLNQLHSGDALIAFS 476
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ AI H VIYGAL PE RR +A FN D E ++L+A+DA+GMGLNL
Sbjct: 477 RREVLDLR-AILMQKGHRVAVIYGALSPEVRRAEAKRFN--DGEAEILIATDAIGMGLNL 533
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+I+RV+F ++ K++G + +VKQI GRAGR G + D D++ L
Sbjct: 534 SIKRVIFSTIYKFDGTSRRLLTSQEVKQIGGRAGRYGKHETGTVGLLAGAGDPDFIRRQL 593
Query: 586 KQPFEVVKKVGLFPFFEQ----VELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHD 639
+ E K+ L P + V+L A ++++ + +L + D +Y L +
Sbjct: 594 EAAPE--KQKDLRPLVQPDSDIVQLIANEINSDSLFGVLTRLKRAVLRPDDPNYRLAPME 651
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG--M 697
+A+ LE VQ L L++R+ + PV+ RD + L+R+A+ ++ V+ +
Sbjct: 652 ETFAIASALEGVQDLELKNRWTYSVCPVDDRD-NGIQRLIRWAADHAAGKTVAAPSSGKL 710
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNA 757
P S + EL E +H+ L + WLS +F +++P + AE ++ + + L
Sbjct: 711 PNPSQASRQELERAEKRHKRLVAWRWLSLRFP-DIYPDLESAEKTTRELNDWIESVLRQQ 769
Query: 758 NWKPE 762
K E
Sbjct: 770 RRKAE 774
>gi|110802850|ref|YP_699375.1| helicase domain-containing protein [Clostridium perfringens SM101]
gi|110683351|gb|ABG86721.1| helicase domain protein [Clostridium perfringens SM101]
Length = 585
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 161/462 (34%), Positives = 259/462 (56%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R +KRK H G TN+GKTY A+QR E +KG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+LLTG+E+ L + H++CT+E + E YDVAVIDEIQM+ D+ RGYAWTRALLG
Sbjct: 190 GIKCNLLTGEEEILFEDATHVSCTIEKANIHEKYDVAVIDEIQMIDDSQRGYAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++++I + GD+ Y R PL+VE ++ +NV+ GD +
Sbjct: 250 LYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESF--HPKNVKEGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ +M I+ C +IYG LPPE R++Q F N+ +L+ +
Sbjct: 308 VLFSKKKVLQMAEQYSQMGIK------CSIIYGDLPPEVRKKQYEEFITGKNK--ILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMG+NL I+R++F S+SK++G+++ + +VKQIAGRAGR+G IY G T +
Sbjct: 360 DAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKG-IYDTGYVATYRDN 418
Query: 577 D---------LDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
D I+ + P + + ++ P E++ L++ + + +
Sbjct: 419 KEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSTKKCEVPYYR-------- 470
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L + +K +LE++Q + P +I M L F
Sbjct: 471 -KMDISEYLIILERLKSYK-LLEEIQ-------WELLKIPFDISKDDLMNQFLNFVDQLF 521
Query: 687 KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
N + P+ + L DLET +Q+++MY S +F
Sbjct: 522 INDQEELF--KPQCYS---GTLYDLETYYQMVNMYYSFSKRF 558
>gi|18311084|ref|NP_563018.1| helicase domain-containing protein [Clostridium perfringens str.
13]
gi|18145767|dbj|BAB81808.1| probable ATP-dependent RNA helicase [Clostridium perfringens str.
13]
Length = 585
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 259/462 (56%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R +KRK H G TN+GKTY A+QR E +KG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ L + H++CT+E + E YDVAVIDEIQM+ D+ RGYAWTRALLG
Sbjct: 190 GVKCNLLTGEEEILFEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++++I + GD+ Y R PL+VE ++ +NV+ GD +
Sbjct: 250 LYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESF--HPKNVQEGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ +M I+ C +IYG LPPE R++Q F N+ +L+ +
Sbjct: 308 VLFSKKKVLQMAEQYSQMGIK------CSIIYGDLPPEVRKKQYEEFITGKNK--ILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMG+NL I+R++F S+SK++G+++ + +VKQIAGRAGR+G IY G T +
Sbjct: 360 DAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKG-IYDTGYVATYRDN 418
Query: 577 D---------LDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
D I+ + P + + ++ P E++ L++ + + +
Sbjct: 419 KEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSTKKCEVPYYR-------- 470
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L + +K +LE++Q + P +I M L F
Sbjct: 471 -KMDISEYLIILERLKSYK-LLEEIQ-------WELLKIPFDISKDDLMNQFLNFVDQLF 521
Query: 687 KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
N + P+ + L DLET +Q+++MY S +F
Sbjct: 522 INDQEELF--KPQCYS---GTLYDLETYYQMVNMYYSFSKRF 558
>gi|168215730|ref|ZP_02641355.1| helicase domain protein [Clostridium perfringens NCTC 8239]
gi|182382198|gb|EDT79677.1| helicase domain protein [Clostridium perfringens NCTC 8239]
Length = 585
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 259/462 (56%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R +KRK H G TN+GKTY A+QR E +KG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ L + H++CT+E + E YDVAVIDEIQM+ D+ RGYAWTRALLG
Sbjct: 190 GVKCNLLTGEEEILFEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++++I + GD+ Y R PL+VE ++ +NV+ GD +
Sbjct: 250 LYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESF--HPKNVQEGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ +M I+ C +IYG LPPE R++Q F N+ +L+ +
Sbjct: 308 VLFSKKKVLQMAEQYSQMGIK------CSIIYGDLPPEVRKKQYEEFITGKNK--ILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMG+NL I+R++F S+SK++G+++ + +VKQIAGRAGR+G IY G T +
Sbjct: 360 DAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKG-IYDTGYVATYRDN 418
Query: 577 D---------LDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
D I+ + P + + ++ P E++ L++ + + +
Sbjct: 419 KEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSTKKCEVPYYR-------- 470
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L + +K +LE++Q + P +I M L F
Sbjct: 471 -KMDISEYLIILERLKSYK-LLEEIQ-------WELLKIPFDISKDDLMNQFLNFVDQLF 521
Query: 687 KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
N + P+ + L DLET +Q+++MY S +F
Sbjct: 522 INDQEELF--KPQCYS---GTLYDLETYYQMVNMYYSFSKRF 558
>gi|110799948|ref|YP_696782.1| helicase [Clostridium perfringens ATCC 13124]
gi|168208805|ref|ZP_02634430.1| helicase domain protein [Clostridium perfringens B str. ATCC 3626]
gi|168212860|ref|ZP_02638485.1| helicase domain protein [Clostridium perfringens CPE str. F4969]
gi|169343663|ref|ZP_02864662.1| helicase domain protein [Clostridium perfringens C str. JGS1495]
gi|182623912|ref|ZP_02951700.1| helicase domain protein [Clostridium perfringens D str. JGS1721]
gi|422875018|ref|ZP_16921503.1| helicase domain-containing protein [Clostridium perfringens F262]
gi|110674595|gb|ABG83582.1| helicase domain protein [Clostridium perfringens ATCC 13124]
gi|169298223|gb|EDS80313.1| helicase domain protein [Clostridium perfringens C str. JGS1495]
gi|170713065|gb|EDT25247.1| helicase domain protein [Clostridium perfringens B str. ATCC 3626]
gi|170715472|gb|EDT27654.1| helicase domain protein [Clostridium perfringens CPE str. F4969]
gi|177910805|gb|EDT73159.1| helicase domain protein [Clostridium perfringens D str. JGS1721]
gi|380304013|gb|EIA16306.1| helicase domain-containing protein [Clostridium perfringens F262]
Length = 585
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 259/462 (56%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R +KRK H G TN+GKTY A+QR E +KG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ L + H++CT+E + E YDVAVIDEIQM+ D+ RGYAWTRALLG
Sbjct: 190 GVKCNLLTGEEEILFEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++++I + GD+ Y R PL+VE ++ +NV+ GD +
Sbjct: 250 LYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESF--HPKNVQEGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ +M I+ C +IYG LPPE R++Q F N+ +L+ +
Sbjct: 308 VLFSKKKVLQMAEQYSQMGIK------CSIIYGDLPPEVRKKQYEEFITGKNK--ILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMG+NL I+R++F S+SK++G+++ + +VKQIAGRAGR+G IY G T +
Sbjct: 360 DAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKG-IYDTGYVATYRDN 418
Query: 577 D---------LDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
D I+ + P + + ++ P E++ L++ + + +
Sbjct: 419 KEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSTKKCEVPYYR-------- 470
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L + +K +LE++Q + P +I M L F
Sbjct: 471 -KMDISEYLIILERLKSYK-LLEEIQ-------WELLKIPFDISKDDLMNQFLNFVDQLF 521
Query: 687 KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
N + P+ + L DLET +Q+++MY S +F
Sbjct: 522 INDQEELF--KPQCYS---GTLYDLETYYQMVNMYYSFSKRF 558
>gi|168205910|ref|ZP_02631915.1| helicase domain protein [Clostridium perfringens E str. JGS1987]
gi|170662616|gb|EDT15299.1| helicase domain protein [Clostridium perfringens E str. JGS1987]
Length = 585
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 259/462 (56%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R +KRK H G TN+GKTY A+QR E +KG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ L + H++CT+E + E YDVAVIDEIQM+ D+ RGYAWTRALLG
Sbjct: 190 GVKCNLLTGEEEILFEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++++I + GD+ Y R PL+VE ++ +NV+ GD +
Sbjct: 250 LYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESF--HPKNVQEGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ +M I+ C +IYG LPPE R++Q F N+ +L+ +
Sbjct: 308 VLFSKKKVLQMAEQYSQMGIK------CSIIYGDLPPEVRKKQYEEFITGKNK--ILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMG+NL I+R++F S+SK++G+++ + +VKQIAGRAGR+G IY G T +
Sbjct: 360 DAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKG-IYDTGYVATYRDN 418
Query: 577 D---------LDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
D I+ + P + + ++ P E++ L++ + + +
Sbjct: 419 KEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSTKKCEVPYYR-------- 470
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L + +K +LE++Q + P +I M L F
Sbjct: 471 -KMDISEYLIILERLKSYK-LLEEIQ-------WELLKIPFDISKDDLMNQFLNFVDQLF 521
Query: 687 KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
N + P+ + L DLET +Q+++MY S +F
Sbjct: 522 INDQEELF--KPQCYS---GTLYDLETYYQMVNMYYSFSKRF 558
>gi|209965410|ref|YP_002298325.1| RNA helicase RhrA [Rhodospirillum centenum SW]
gi|31322740|gb|AAP22927.1| RhrA [Rhodospirillum centenum]
gi|209958876|gb|ACI99512.1| RNA helicase RhrA [Rhodospirillum centenum SW]
Length = 740
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 167/498 (33%), Positives = 276/498 (55%), Gaps = 27/498 (5%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR + R+++ GPTNSGKT+ A+Q +A G+Y +PLRLLA+EV D++N G
Sbjct: 249 FPLARALGRRLVLVIGPTNSGKTHRAMQALRQAPTGVYLAPLRLLALEVMDRLNREGTPT 308
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+LLTG+E+ VP + H++ T+EM+ + DVAVIDE+QM++D RG+AWT AL+G+ A
Sbjct: 309 TLLTGEEEIRVPDARHLSSTIEMLDPEATVDVAVIDEVQMLADRDRGWAWTAALMGVPAK 368
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-VVEAKTLLGDLRNVRSGDCVVAF 464
++L G P V +V + + G+ L ER +PL ++E + D V GD ++AF
Sbjct: 369 TVYLLGAPEVRPLVERAAAHLGEPLEVVELERKQPLHMIEERLEWSD---VGRGDALIAF 425
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
SRRE+ V+ ++ VIYGAL P+ RR++A FN E DV++A+DA+GMGLN
Sbjct: 426 SRREVHAVRDTVQAR-GLTAAVIYGALAPDVRRREAERFN--TGEADVVIATDAIGMGLN 482
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--GLTTTLNLDDLDYLI 582
L +RRV+F +L K++G ++ + ++VKQIAGRAGR G G+ L ++
Sbjct: 483 LPVRRVLFTTLEKFDGVEMRSLHPAEVKQIAGRAGRFGHFEAGEFGVVGRGTPQALRMIV 542
Query: 583 ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF-LCRHDHI 641
F + + P V AG++ +++ L++ F R GS F + + +
Sbjct: 543 TRPDTSFGPKTALTVRPTRAMVARLAGRVGSHSLSLLIDCFA-AARTAGSPFRVADLEPL 601
Query: 642 KKVANMLEKVQGLSLEDRFNFCFAPVNI-RDPKA-MYHLLRFASSYSKNAPVSIAMGMPK 699
+K+A +L++ + + ED+ + F P ++ +D A +H + A + PV + +
Sbjct: 602 RKLAAVLDEKE-IGFEDKLSLLFVPADLDKDVDARFFHRICRAVETGEAVPVGLVVPARV 660
Query: 700 GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP-----YAKKAEAMATDIAELLGQSL 754
G + + LE + +Y W S +F + FP ++AE ++ ++E+L +
Sbjct: 661 GMLDD----MSLEELSRTCDLYYWASRKFPRQ-FPDRTVVQERRAE-VSRRLSEILAAAA 714
Query: 755 TNANWKPESRQA--GKPK 770
P+ +Q G P+
Sbjct: 715 RTRGRTPKPKQGFRGAPR 732
>gi|291525366|emb|CBK90953.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
17629]
gi|291527047|emb|CBK92633.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
Length = 647
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/333 (44%), Positives = 208/333 (62%), Gaps = 6/333 (1%)
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
K R I + +P FP A+ MKR I H GPTNSGKTY AL+R A+ G+Y PL
Sbjct: 139 KELRREIVTLVPARPELEFPKAQSMKRHFILHIGPTNSGKTYQALERLKLAQNGVYLGPL 198
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMS 387
RLLA+EV++K+N G+ C++LTGQE V S A TVEM+ D+ YD+AVIDE QM++
Sbjct: 199 RLLALEVYEKMNDAGIPCTMLTGQECLEVSDSRITASTVEMLDCDKEYDIAVIDEAQMVA 258
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
D RG++WTRA+LG +A EIH+C P DVV + + DE + YER L +E K
Sbjct: 259 DDDRGHSWTRAILGTLAGEIHICMSPVAKDVVIHLINLCHDEYEIREYERKTALKLEDKP 318
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
++VR GD + FS++ + + +E++ VIYG+LPPE RR+Q LFN++
Sbjct: 319 -FSFPQDVREGDAFIVFSKKSVLNIAGRLEEN-GIKPSVIYGSLPPEIRRRQMTLFNEKK 376
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD 567
+ V+V++DA+GMGLNL +RR+VF + K++G P+ S++KQIAGRAGR G +Y
Sbjct: 377 TQ--VVVSTDAIGMGLNLPVRRIVFLEVEKFDGVSRRPLVISEIKQIAGRAGRFG-LYDT 433
Query: 568 GLTTTLNLDDLDYLIECLKQPFEVVKKVGL-FP 599
G T L +L+YL L P + + V L FP
Sbjct: 434 GYVTALGQKNLNYLKNTLNIPEQDIDIVSLGFP 466
>gi|154286238|ref|XP_001543914.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407555|gb|EDN03096.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 636
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 171/256 (66%), Gaps = 10/256 (3%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P W+P AR + R I H GPTNSGKTY AL+R AK G Y PLRLLA E++
Sbjct: 158 ADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIYT 217
Query: 337 KVNALGVYCSLLTGQEKKL----VP--FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
++NA G+ C L+TG E ++ VP FSN TVEMV + +V VIDEIQM++D
Sbjct: 218 RLNAKGIPCGLVTGDEVRISQDQVPGIFSN----TVEMVPLGQDVEVGVIDEIQMIADPH 273
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWTRALLG A E+HLCG+ V+ ++R + GD+L HYER PL ++L G
Sbjct: 274 RGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKG 333
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
+L N++ GDCVVAFSR I +K IEK T ++YG+LP E R QQA+LFND +N++
Sbjct: 334 NLSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDY 393
Query: 511 DVLVASDAVGMGLNLN 526
D LVASDA+GMGLN N
Sbjct: 394 DFLVASDAIGMGLNFN 409
>gi|188590617|ref|YP_001921407.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum
E3 str. Alaska E43]
gi|251777622|ref|ZP_04820542.1| helicase domain protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|188500898|gb|ACD54034.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum
E3 str. Alaska E43]
gi|243081937|gb|EES47827.1| helicase domain protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 585
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 164/460 (35%), Positives = 248/460 (53%), Gaps = 40/460 (8%)
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T P + R MKRK H G TN+GKTYNA++R AK G+Y SPLR+LA+E F+++N
Sbjct: 128 TNPKDEYIHTRHMKRKFYIHLGDTNTGKTYNAIERLKTAKNGVYLSPLRILALENFERLN 187
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
GV C LLTG+E+ + + H +CT+E V+ E YD+AVIDEIQM+SD RG AW++A+
Sbjct: 188 KEGVVCDLLTGEEEIIKVGATHASCTIEKVNLKEHYDIAVIDEIQMISDTHRGMAWSKAV 247
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL DEIH+CG + ++ K+ + DE + Y+R PL VE K + +V+ GD
Sbjct: 248 LGLQCDEIHICGASNAKYILEKMLKDCNDEYEIKDYKRSIPLEVEYKNF--NYNDVKDGD 305
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
+V FS++ + E+ + VIYG LPPE RR Q F ++ E VLV +DA+
Sbjct: 306 AIVVFSKKRVLEIAEDYSRE-GIKASVIYGDLPPEVRRMQYEQFVNK--ETKVLVTTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY-----------PDG 568
GMG+NL IRR+VF S+ K++G+++ + +VKQ+ GRAGR G IY D
Sbjct: 363 GMGVNLPIRRIVFMSIRKFDGEEVRELTSQEVKQVGGRAGRIG-IYDVGYIAGVGGTADF 421
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
+ + L +D + + + + P E + K+ P E++ L++ + EK +
Sbjct: 422 IKSKLEAED-NIIRKAVVGPSEAILKIKSLPLNEKLALWSTR---------EEKLDYYTK 471
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
+D S ++ D IKK L ED ++ P ++ M L + N
Sbjct: 472 MDISEYILILDKIKKYK--------LKEEDEWDLLKVPFDVSRDDLMETFLNYVDELFIN 523
Query: 689 APVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ +P+ N L +LE +Q ++MY S F
Sbjct: 524 KQDELF--IPQCYTGN---LDELEIYYQKVNMYYSFSKIF 558
>gi|5103037|dbj|BAA78770.1| probable ATP-dependent RNA helicase [Clostridium perfringens]
Length = 585
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 258/462 (55%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R +KRK H G TN+GKTY A+QR E +KG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLHTRRLKRKFYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ L + H++CT+E + E YDVAVIDEIQM+ D+ RGYAWTRALLG
Sbjct: 190 GVKCNLLTGEEEILFEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++++I + GD+ Y R PL+VE ++ +NV+ GD +
Sbjct: 250 LYCTEIHICGAFNAKNILKEIIEDCGDDYEIIEYHRDIPLIVEDESF--HPKNVQEGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ +M I+ C +IYG LPPE R++Q F N+ +L+ +
Sbjct: 308 VLFSKKKVLQMAEQYSQMGIK------CSIIYGDLPPEVRKKQYEEFITGKNK--ILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMG+NL I+R++F S+SK++G+++ + +VKQIAGRAGR+G IY G T +
Sbjct: 360 DAIGMGVNLPIKRIIFLSISKFDGEQMRELTSQEVKQIAGRAGRKG-IYDTGYVATYRDN 418
Query: 577 D---------LDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
D I+ + P + + ++ P E++ L++ + + +
Sbjct: 419 KEFIEERLEEEDISIKRAVLGPSDAILEIDNLPLNEKLALWSTKKCEVPYYR-------- 470
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L + +K +LE++Q + P +I M L F
Sbjct: 471 -KMDISEYLIILERLKSYK-LLEEIQ-------WELLKIPFDISKDDLMNQFLNFVDQLF 521
Query: 687 KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
N P+ + L DLET +Q+++MY S +F
Sbjct: 522 INDQEE--RFKPQCYS---GTLYDLETYYQMVNMYYSFSKRF 558
>gi|238923919|ref|YP_002937435.1| putative ATP dependent RNA helicase [Eubacterium rectale ATCC
33656]
gi|238875594|gb|ACR75301.1| putative ATP dependent RNA helicase [Eubacterium rectale ATCC
33656]
Length = 647
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 149/333 (44%), Positives = 207/333 (62%), Gaps = 6/333 (1%)
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
K R I + +P FP A+ MKR I H GPTNSGKTY AL+R A+ G+Y PL
Sbjct: 139 KELRREIVTLVPARPELEFPKAQSMKRHFILHIGPTNSGKTYQALERLKLAQNGVYLGPL 198
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMS 387
RLLA+EV++K+N G+ C++LTGQE V S A TVEM+ D+ YD+AVIDE QM++
Sbjct: 199 RLLALEVYEKMNDAGIPCTMLTGQECLEVSDSRITASTVEMLDCDKEYDIAVIDEAQMVA 258
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
D RG++WTRA+LG +A EIH+C P DVV + + DE + YER L +E K
Sbjct: 259 DDDRGHSWTRAILGTLAGEIHICMSPVAKDVVIHLINLCHDEYEIREYERKTALKLEDKP 318
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
++VR GD + FS++ + + +E++ VIYG+LPPE RR+Q LFN++
Sbjct: 319 -FSFPQDVREGDAFIVFSKKSVLNIAGRLEEN-GIKPSVIYGSLPPEIRRRQMTLFNEKK 376
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD 567
+ V+V++DA+GMGLNL +RR+VF + K++G P+ S++KQIAGRAGR G +Y
Sbjct: 377 TQ--VVVSTDAIGMGLNLPVRRIVFLEVEKFDGVSRRPLVISEIKQIAGRAGRFG-LYDT 433
Query: 568 GLTTTLNLDDLDYLIECLKQPFEVVKKVGL-FP 599
G T L +L YL L P + + V L FP
Sbjct: 434 GYVTALGQKNLSYLKNTLNIPEQDIDIVSLGFP 466
>gi|358056046|dbj|GAA98391.1| hypothetical protein E5Q_05077 [Mixia osmundae IAM 14324]
Length = 759
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 137/321 (42%), Positives = 197/321 (61%), Gaps = 24/321 (7%)
Query: 289 ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-------- 340
AR + R I H GPTNSGKT+NAL+ ++ G Y PLR+LA EVF + N+
Sbjct: 194 ARAIPRTIHVHVGPTNSGKTHNALRALADSDNGAYAGPLRMLAHEVFHRFNSGDIKGKRG 253
Query: 341 LGVYCSLLTGQE-KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
+ C+L+TG++ +++ P + ++CT+EMV ++ DV VIDEIQ+M+ RG AWT AL
Sbjct: 254 QSLQCNLITGEDIRQVSPEAGLVSCTIEMVPIKKLMDVTVIDEIQLMALHDRGAAWTGAL 313
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
+ L A +H+CG+PS + ++ KI + GD + Y+R PL + K LG L+ + GD
Sbjct: 314 INLQARNVHVCGEPSAVGLIYKIARQCGDNVVLHEYDRLSPLTLSKKA-LGSLKQLERGD 372
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
C+VAFSR+ IF++K IE+ TN V YG LPPE R QA FN D E D+++ SDA+
Sbjct: 373 CLVAFSRKRIFQLKRDIERDTNLRVAVAYGGLPPEVRTSQAKSFN--DGEVDIMIGSDAL 430
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY------------PD 567
GMGLNL++RR++F ++ K++G++ IP+ KQIAGRAGR G +
Sbjct: 431 GMGLNLHVRRMIFSAMEKWDGERAIPLNVPLTKQIAGRAGRYGKQFLVEGRPVDPPEKSQ 490
Query: 568 GLTTTLNLDDLDYLIECLKQP 588
G TTL DDL +L + P
Sbjct: 491 GFVTTLRSDDLPFLETAINAP 511
>gi|451819288|ref|YP_007455489.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785267|gb|AGF56235.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 585
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 252/460 (54%), Gaps = 44/460 (9%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR MKRK H G TN+GKTYNALQR AKKG+Y SPLR+LA+E ++++N+
Sbjct: 130 PKDEYLIARSMKRKFYIHLGDTNTGKTYNALQRLKSAKKGVYLSPLRILALENYERLNSE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+L+TG+E+ + + H +CT+E V+ E Y++AVIDEIQM+SD RG AW++A+LG
Sbjct: 190 GVLCNLMTGEEEIINEAATHTSCTIEKVNLREHYEIAVIDEIQMISDPFRGMAWSKAVLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L DEIH+CG + ++ I + D+ + Y R PL VE K +++ GD +
Sbjct: 250 LQCDEIHICGAANAKYILETIIKDCKDDFEIKEYTRAIPLEVEFKNF--SYNDIQEGDAI 307
Query: 462 VAFSRREIFEVKMAIEKHTNH--HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
V FS++ + E+ E++++ VIYG LPPE R+ Q F ++ E +LV +DA+
Sbjct: 308 VVFSKKRVLEIA---EEYSSRGIKASVIYGDLPPEVRKMQYTQFVNK--ETKILVTTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN----- 574
GMG+NL IRR++F S+ K++G+++ + ++KQ+ GRAGR G IY G ++
Sbjct: 363 GMGVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQVGGRAGRIG-IYDVGYIASVGGNASV 421
Query: 575 -LDDLDYLIECLKQ----PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
D L+ + ++Q P E + K+ P E++ L++ + EK ++
Sbjct: 422 IKDKLEIEDQVIQQAVIGPTEAILKIKSLPLNEKLALWSTR---------EEKMDYYTKM 472
Query: 630 DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA 689
D S +L D IK LS E +++ P ++ + M L + N
Sbjct: 473 DVSEYLLILDKIKNYK--------LSEEIQWDLLKVPFDVSSDELMNTFLDYVDELFINK 524
Query: 690 PVSIAMGMP-KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ KGS L DLE +Q ++MY S F
Sbjct: 525 QEELFKPQCFKGS------LDDLEIYYQKINMYYSFSKIF 558
>gi|293376698|ref|ZP_06622921.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325845178|ref|ZP_08168486.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
gi|292644655|gb|EFF62742.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325488774|gb|EGC91175.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
Length = 586
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 262/458 (57%), Gaps = 40/458 (8%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R MKRK H G TN+GKTY+A++ ++K+GIY +PLRLLA+E ++ +N
Sbjct: 131 PKDEYKKTRQMKRKFYLHLGETNTGKTYHAIEALKKSKRGIYLAPLRLLALENYENLNQS 190
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
+ C LLTG+E+ +V +NHI+CT+E + +++YDVAVIDE+Q++ D RG +WT+A+LG
Sbjct: 191 QIPCHLLTGEEEIIVTNANHISCTIEKLDLNQLYDVAVIDEVQLIGDVIRGASWTKAILG 250
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
LM+ +IH+CG + ++ ++ + G+E + Y R PL +E + N +GD +
Sbjct: 251 LMSQDIHICGALNTKKLLIQLIEDCGEEYEIKEYYRNTPLKLEQTPY--QMNNPSAGDAL 308
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
+AFS++++ E+ + + VIYG LPPE RR Q ++F+ ++E +L+ +DA+GM
Sbjct: 309 IAFSKKKVLELSRYYQDR-GYKVSVIYGDLPPEVRRLQYSMFSSGESE--LLITTDAIGM 365
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN------- 574
G+NL I+R+VF SL K++G+ I + +VKQIAGRAGR+G IY G T+++
Sbjct: 366 GVNLPIKRIVFTSLKKFDGEDIRELTSQEVKQIAGRAGRKG-IYEVGYVTSIDEYLGRLQ 424
Query: 575 --LDDLDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDG 631
L+ D LIE + P E++ ++ P E++ +++ +++ Q ++D
Sbjct: 425 EKLECEDRLIEKAIIGPTELLLQIKGIPLIEKLAIWSMYYDEFSYYQ---------KMDV 475
Query: 632 SYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV 691
S++L + IK LS D++ P+N +P+ + LL F V
Sbjct: 476 SHYLFILEQIKPYK--------LSQNDQWKVMKLPINFTNPELLNLLLFFIEE------V 521
Query: 692 SIAMGMPKGSAKNDAELLD-LETKHQVLSMYLWLSHQF 728
+ K +E LD LE +Q +++Y S F
Sbjct: 522 FVDGNFELTKPKIHSEDLDLLEIHYQEVNLYYNFSKSF 559
>gi|429764545|ref|ZP_19296859.1| helicase protein [Clostridium celatum DSM 1785]
gi|429187827|gb|EKY28729.1| helicase protein [Clostridium celatum DSM 1785]
Length = 453
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 207/318 (65%), Gaps = 7/318 (2%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R MKRKI H G TN+GKTYNA++R AKKG+Y SPLR+LA+E ++K+N
Sbjct: 130 PKDEYMITRRMKRKIYIHLGDTNTGKTYNAVERLKTAKKGVYLSPLRILALENYEKLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C L+TG+E+ + + HI+CT+E V+ + YD+AVIDEIQM++D RG AW+RA+LG
Sbjct: 190 GVVCDLMTGEEEIIKENATHISCTIEKVNLKQNYDIAVIDEIQMINDNQRGIAWSRAVLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L +EIH+CG + +++ K+ + D+ + Y R PL VE K +V+ GD +
Sbjct: 250 LRCNEIHICGAMNAKELLIKMLDDCEDDYEIKEYHRNIPLEVETKNF--SYNDVQEGDAI 307
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
V FS++ + E+ + + N +IYG LPPE R+ Q F +++N+ VLV +DA+GM
Sbjct: 308 VVFSKKRVLEIAQSY-SNNNVKTSIIYGDLPPEVRKMQYEQFINKENK--VLVTTDAIGM 364
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581
G+NL IRR++F S+ K++G+++ + ++KQ+AGRAGR+G IY G ++ D + +
Sbjct: 365 GVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQVAGRAGRKG-IYDIGYVAGVS-DTHNII 422
Query: 582 IECLKQPFEVVKKVGLFP 599
L++ EV+K+ + P
Sbjct: 423 SRKLEEKDEVIKQAVIGP 440
>gi|384484725|gb|EIE76905.1| hypothetical protein RO3G_01609 [Rhizopus delemar RA 99-880]
Length = 378
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 157/412 (38%), Positives = 222/412 (53%), Gaps = 42/412 (10%)
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
M S DVAVIDEIQ+++D RG+AWT+ALLGL A EIHLCG+ + + ++RKIC +
Sbjct: 1 MASIGRPLDVAVIDEIQLIADPNRGWAWTQALLGLKAKEIHLCGEEAAVPLIRKICEDLD 60
Query: 428 DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVI 487
+E+ Y R P V L DL + GDCVVAFSR IF++K IE T C V
Sbjct: 61 EEVVVNKYGRLTPYTVSDMPLKSDLSQIEKGDCVVAFSRMNIFDLKKRIEAQTGLKCAVA 120
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
YG+LPPETR QA FND D+ DVLVASDAVGMGLNLNI+RVVF ++ K++G ++ P+
Sbjct: 121 YGSLPPETRALQAKSFNDPDSGIDVLVASDAVGMGLNLNIKRVVFSNIKKFDGKEVRPIS 180
Query: 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
Q+KQIAGRAGR G+ Y +G+ T LN DL Y+ E + P VEL
Sbjct: 181 IPQLKQIAGRAGRFGTAYGNGIVTALNRADLRYIKEAVAAP--------------NVEL- 225
Query: 608 AGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV 667
++ N TF LL +A+ LE+++ L L DR+ F APV
Sbjct: 226 --EMPNETFSGLL----------------------LIADNLEEIR-LPLRDRYQFVTAPV 260
Query: 668 NIRDPKAMYHLLRFASSYSKNAPVSI--AMGMPKGSAKNDAELLDLETKHQVLSMYLWLS 725
+ R ++M + A +S+ ++ + +P + + L LE H+ + +Y+WLS
Sbjct: 261 STRSDESMELIKILARKFSQKKICTLDELIELPTNPPTSPSGLKALEESHKQIMLYMWLS 320
Query: 726 HQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQRED 777
++ + A ++ + L+ L + R+ K RED
Sbjct: 321 TRYPDTFITTQDDATSIKSQCEHLIDDGLKLSRASQSIRKGRKHPRPHFRED 372
>gi|347539189|ref|YP_004846614.1| helicase domain containing protein [Pseudogulbenkiania sp. NH8B]
gi|345642367|dbj|BAK76200.1| helicase domain protein [Pseudogulbenkiania sp. NH8B]
Length = 658
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 174/505 (34%), Positives = 270/505 (53%), Gaps = 24/505 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F A+ M+R I GPTNSGKT+ A++ +A G Y +PLRLLA+E + ++ GV
Sbjct: 164 FTLAQSMRRHFIAVLGPTNSGKTHAAMEHLAQAGTGAYLAPLRLLALENYQRLLDAGVAV 223
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+++KL P + H+A TVEM++ + DVAVIDEIQ++ D RG AWT A+ G+ A
Sbjct: 224 SLITGEQRKLHPDATHVASTVEMLNPNRPLDVAVIDEIQLLDDPDRGAAWTAAVCGVPAS 283
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
++L G + + G L + +R PLV+E K LG L+N+++GD ++AFS
Sbjct: 284 TVYLLGALEAEPAIEALVKRVGGTLEVKKLQRKSPLVMEKKP-LGSLKNLQAGDVLIAFS 342
Query: 466 RREIFEVK-MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
RRE+ + AIE+ IYG L PE R+ QA F D E ++V +DA+GMGLN
Sbjct: 343 RREVLNWRDQAIEQ--GFAVSAIYGNLSPEVRQAQAERFI--DGETKIVVGTDAIGMGLN 398
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584
RRV+F + SK++G +P + KQIAGRAGR G+ + G L+ +
Sbjct: 399 TPARRVIFTTASKWDGYSEGEIPAALAKQIAGRAGRFGA-HEAGYVAGLDSHTHQIIANL 457
Query: 585 LKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH--DH 640
LK+ E + G + P + ++ A LLE F ++ + +FL + D
Sbjct: 458 LKETTEPLPASGFYVAPSLDYLQQIAAATGQSKLQALLELFTKHINVHDEFFLPANLADQ 517
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS--SYSKNAPVSIAMGMP 698
I+K A L+ + L+L DRF F PV+ + P L +A + + AP+ GM
Sbjct: 518 IEK-ARWLDALP-LTLADRFTFSLCPVSTKIPMLERALQDWAQYRADGREAPLLRMEGM- 574
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
+N EL LE ++ + Y WL ++ + FP+ + A+ + ++ + L N
Sbjct: 575 --GGRN--ELQYLEDTCKLYAAYAWLGYRMA-DTFPHGEMAQTLMQSTSDKIDALLQAQN 629
Query: 759 WKPESRQAGKPKLHQQREDGYDRPR 783
+ R+A + Q+R+ G +PR
Sbjct: 630 TRRHGRRAPQ---DQRRQPGSGKPR 651
>gi|224826875|ref|ZP_03699974.1| helicase domain protein [Pseudogulbenkiania ferrooxidans 2002]
gi|224600862|gb|EEG07046.1| helicase domain protein [Pseudogulbenkiania ferrooxidans 2002]
Length = 658
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 174/505 (34%), Positives = 270/505 (53%), Gaps = 24/505 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F A+ M+R I GPTNSGKT+ A++ +A G Y +PLRLLA+E + ++ GV
Sbjct: 164 FTLAQSMRRHFIAVLGPTNSGKTHAAMEHLAQAGTGAYLAPLRLLALENYQRLLDAGVAV 223
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+++KL P + H+A TVEM++ + DVAVIDEIQ++ D RG AWT A+ G+ A
Sbjct: 224 SLITGEQRKLHPDATHVASTVEMLNPNRPLDVAVIDEIQLLDDPDRGAAWTAAVCGVPAS 283
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
++L G + + G L + +R PLV+E K LG L+N+++GD ++AFS
Sbjct: 284 TVYLLGALEAEPAIEALVKRVGGTLEVKKLQRKSPLVMEKKP-LGSLKNLQAGDVLIAFS 342
Query: 466 RREIFEVK-MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
RRE+ + AIE+ IYG L PE R+ QA F D E ++V +DA+GMGLN
Sbjct: 343 RREVLNWRDQAIEQ--GFAVSAIYGNLSPEVRQAQAERFI--DGETKIVVGTDAIGMGLN 398
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584
RRV+F + SK++G +P + KQIAGRAGR G+ + G L+ +
Sbjct: 399 TPARRVIFTTASKWDGYSEGEIPAALAKQIAGRAGRFGA-HEAGYVAGLDSHTHQIIANL 457
Query: 585 LKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH--DH 640
LK+ E + G + P + ++ A LLE F ++ + +FL + D
Sbjct: 458 LKETTEPLPASGFYVAPSLDYLQQIAAATGQSKLQALLELFTKHINVHDEFFLPANLADQ 517
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS--SYSKNAPVSIAMGMP 698
I+K A L+ + L+L DRF F PV+ + P L +A + + AP+ GM
Sbjct: 518 IEK-ARWLDALP-LTLADRFTFSLCPVSTKIPMLERALQDWAQYRADGREAPLLRMEGM- 574
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
+N EL LE ++ + Y WL ++ + FP+ + A+ + ++ + L N
Sbjct: 575 --GGRN--ELQYLEDTCKLYAAYAWLGYRMA-DTFPHGEMAQTLMQSTSDKIDALLQAQN 629
Query: 759 WKPESRQAGKPKLHQQREDGYDRPR 783
+ R+A + Q+R+ G +PR
Sbjct: 630 TRRHGRRAPQ---DQRRQPGSGKPR 651
>gi|302875702|ref|YP_003844335.1| helicase domain-containing protein [Clostridium cellulovorans 743B]
gi|307689134|ref|ZP_07631580.1| helicase domain-containing protein [Clostridium cellulovorans 743B]
gi|302578559|gb|ADL52571.1| helicase domain protein [Clostridium cellulovorans 743B]
Length = 585
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 258/464 (55%), Gaps = 40/464 (8%)
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
+ P + AR +KRK H G TN+GKTYNA+ + A G+Y SPLR+LA+E ++K+N
Sbjct: 128 SNPKNEYKEARRIKRKFYLHLGDTNTGKTYNAMNKLKAASSGVYLSPLRILALENYEKLN 187
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
GV C+L TG+E+ ++ + H ACT+E + YDVA+IDEIQM++D RG AWT+AL
Sbjct: 188 KEGVLCNLETGEEEVIIEGAKHTACTIEKLDIKNEYDVAIIDEIQMINDDQRGAAWTKAL 247
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL A EIH+CG + +++++I + + Y+R PLVVE K+ + +V+ GD
Sbjct: 248 LGLKAIEIHICGALNSKEILKEILEDCDEVFEIIEYKRNLPLVVEEKSF--NYNDVQVGD 305
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
+V FS++++ ++ A K + VIYG LPPE RR+Q + F NE ++L+ +DA+
Sbjct: 306 ALVVFSKKKVLKL-AAYYKELDKKVSVIYGDLPPEVRRKQYDQF--ISNEAEILITTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMG+NL IRR++F + K++G+++ + +VKQIAGRAGR G IY G + ++ +
Sbjct: 363 GMGVNLPIRRIIFMDVRKFDGNQLRYLTTQEVKQIAGRAGRLG-IYDIGYVASYK-ENQN 420
Query: 580 YLIECLK-----------QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
YL E L P E + K+ P E++ ++A + F + +
Sbjct: 421 YLSEYLSVRDDEIESAVLGPSEEILKIQCLPLAEKLAIWAEKEEELPFYR---------K 471
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
+D S +L D +K LS D++ P ++ + + M + SY
Sbjct: 472 MDVSEYLIVLDAVKGYK--------LSERDQWQLLKIPFDVSNVEIMQTFI----SYIDE 519
Query: 689 APVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
V + K S K EL +LET +Q +S+Y S FK E+
Sbjct: 520 LFVLKNKILTKPSLKF-LELTELETFYQKISLYYSFSKVFKIEM 562
>gi|359412285|ref|ZP_09204750.1| helicase domain-containing protein [Clostridium sp. DL-VIII]
gi|357171169|gb|EHI99343.1| helicase domain-containing protein [Clostridium sp. DL-VIII]
Length = 585
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 168/462 (36%), Positives = 253/462 (54%), Gaps = 48/462 (10%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR MKRK H G TN+GKTYNALQR +AKKG+Y SPLR+LA+E F+++N
Sbjct: 130 PKDEYLKARGMKRKFYIHLGDTNTGKTYNALQRLKKAKKGVYLSPLRILALENFERLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C LLTG+E+ + + H +CT+E V+ E YD+AVIDEIQM+SD RG AW++A+LG
Sbjct: 190 GVICDLLTGEEEIVNLGATHTSCTIEKVNLKEHYDIAVIDEIQMISDPFRGMAWSKAVLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L DEIH+CG + ++ I + D+ + Y R PL +E K + GD +
Sbjct: 250 LKCDEIHICGAANARFILETIIKDCKDDYEIKEYTRAIPLEIEYKNF--SYNDAVEGDAI 307
Query: 462 VAFSRREIFEVKMAIEKHTNH--HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
V FS++ + E+ E++++ VIYG LPPE R+ Q F +++N+ +LV +DA+
Sbjct: 308 VVFSKKRVLEIA---EEYSSRGIRTSVIYGDLPPEVRKMQYEQFINKENK--ILVTTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL--NLD- 576
GMG+NL IRR++F S+ K++G+++ + +VKQ+ GRAGR G IY G ++ N D
Sbjct: 363 GMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQVGGRAGRIG-IYDVGYIASVGGNADV 421
Query: 577 ---DLDYLIECLKQ----PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
L+ E +KQ P E + K+ P E++ L++ + EK ++
Sbjct: 422 IKAKLETEDEIIKQAVIGPSEAILKIRSLPLNEKLALWSTR---------EEKLDYYKKM 472
Query: 630 DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA 689
D S +L D +KK L E +++ P ++ + M L + N
Sbjct: 473 DISEYLIILDRVKKYK--------LREEIQWDLLKVPFDVSRDELMDAFLNYVDELFINK 524
Query: 690 PVSIAMGMP---KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ P KGS L DLE +Q ++MY S F
Sbjct: 525 QEE--LFKPECFKGS------LDDLEIYYQKVNMYYSFSKIF 558
>gi|319956822|ref|YP_004168085.1| helicase domain-containing protein [Nitratifractor salsuginis DSM
16511]
gi|319419226|gb|ADV46336.1| helicase domain protein [Nitratifractor salsuginis DSM 16511]
Length = 939
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 168/492 (34%), Positives = 273/492 (55%), Gaps = 25/492 (5%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR +KRKI +H GPTNSGKTY A++R +A+ G Y +PLRLLA+E ++ + G+
Sbjct: 426 FPLARRLKRKITFHAGPTNSGKTYAAMERLKKAETGYYLAPLRLLALEGYEDLRHSGIAA 485
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+E+ + S HI+ T+EM++T+ + VIDEIQM+ D RG+AW AL+G A
Sbjct: 486 SLITGEEEIVDEESTHISSTIEMLNTEVEVECCVIDEIQMIDDRDRGWAWANALIGAPAK 545
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E+ L G + ++ V+++C G+EL +ER PL + + + + +VAFS
Sbjct: 546 EVILTGSENAIEAVQEVCDYLGEELEVIRFERKNPLELMKHPV--STKKIEPNTAIVAFS 603
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R+E+ +K + N V+YG L PE RR++A F + +++ VLVA+DA+ MGLNL
Sbjct: 604 RKEVLSLKQQLSNRYN--VSVVYGNLSPEVRREEARRFREGESQ--VLVATDAIAMGLNL 659
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
IR ++F +K++G + + S++ QIAGRAGR G ++ G L+ L +
Sbjct: 660 PIRTILFAKDNKFDGLRRRELTTSEILQIAGRAGRYG-LHEHGYVGALDAGTLQTIAARF 718
Query: 586 KQPFEVVKKVGLFPF-----FEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDH 640
P ++ PF E V L L ++LE F +N +G + D
Sbjct: 719 HAPLPPIR----LPFSVMASLEHVLLIGEILETDKLLEILEFFAQNMEFEGPFQAANIDS 774
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP--KAMYHLLRFASSYSKNAPVSI--AMG 696
+ +VA ++++ + L L R++ APV+I P ++++H R+ K PV
Sbjct: 775 MMEVAAIVDEYE-LDLRSRYHLACAPVSISSPYIESVFH--RYLGHLEKGEPVPYIPPRE 831
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
+P + N+ ELL+ E + + +S+YLWLS +F+E+ FP +KA + + SL
Sbjct: 832 LPDFAVSNE-ELLNAEDRVKEVSLYLWLSFKFREQ-FPDTEKAREARERLNHFIENSLQK 889
Query: 757 ANWKPESRQAGK 768
++ R+ G+
Sbjct: 890 GDFVKRCRRCGR 901
>gi|187933176|ref|YP_001886414.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum B
str. Eklund 17B]
gi|187721329|gb|ACD22550.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum B
str. Eklund 17B]
Length = 585
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 247/460 (53%), Gaps = 40/460 (8%)
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T P + R MKRK H G TN+GKTYNA++R AK G+Y SPLR+LA+E F+++N
Sbjct: 128 TNPKDEYIHTRHMKRKFYIHLGDTNTGKTYNAIERLKTAKNGVYLSPLRILALENFERLN 187
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
GV C LLTG+E+ + + H +CT+E V+ E YD+AVIDEIQM+SD RG AW++A+
Sbjct: 188 KEGVVCDLLTGEEEIIKVGATHASCTIEKVNLKEHYDIAVIDEIQMISDTHRGMAWSKAV 247
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LGL DEIH+CG + ++ K+ + DE + Y+R PL VE K + +V+ GD
Sbjct: 248 LGLQCDEIHICGASNAKYILEKMLKDCNDEYEIKDYKRSIPLEVEYKNF--NYNDVKDGD 305
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
+V FS++ + E+ + VIYG LPPE RR Q F ++ E VLV +DA+
Sbjct: 306 AIVVFSKKRVLEIAEDYSRE-GIKASVIYGDLPPEVRRMQYEQFVNK--ETKVLVTTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY-----------PDG 568
GMG+NL IRR++F S+ K++G+++ + +VKQ+ GRAGR G IY D
Sbjct: 363 GMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQVGGRAGRIG-IYDVGYIAGVGGTADF 421
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
+ + L +D + + + + P + + K+ P E++ L++ + EK +
Sbjct: 422 IKSKLEAED-NIIRKAVVGPSDAILKIKSLPLNEKLALWSTR---------EEKLDYYTK 471
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
+D S ++ D IKK L E ++ P ++ M L + N
Sbjct: 472 MDISEYILILDKIKKYK--------LKEETEWDLLKVPFDVSRDDLMETFLNYVDELFIN 523
Query: 689 APVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ +P+ N L +LE +Q ++MY S F
Sbjct: 524 KQDELF--IPQCYTGN---LDELEIYYQKVNMYYSFSKIF 558
>gi|239628719|ref|ZP_04671750.1| helicase domain-containing protein [Clostridiales bacterium
1_7_47_FAA]
gi|239518865|gb|EEQ58731.1| helicase domain-containing protein [Clostridiales bacterium
1_7_47FAA]
Length = 593
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 204/320 (63%), Gaps = 8/320 (2%)
Query: 281 KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA 340
KP +P AR MKR+ I H GPTNSGKT++AL+R E G Y PLRLLA+EV+DK+N+
Sbjct: 89 KPEEEYPGAREMKRRFILHVGPTNSGKTHDALERLKECGHGAYFGPLRLLALEVYDKLNS 148
Query: 341 LGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
G+ CS++TG+E VP + ACTVEM++ + +D+ V+DE QM++D RG+ WTRA+L
Sbjct: 149 EGLACSMITGEETLEVPGAVCQACTVEMLNDHDYFDIVVVDECQMVADPYRGHNWTRAVL 208
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
GL A+EIHLC P D++ ++ GD+ ++R L +E K R+++ GD
Sbjct: 209 GLRAEEIHLCMAPEAEDIIVQMIKRCGDQFRVVRHKRNTRLTLETKP-YNLKRDLKKGDA 267
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
++ FS++ + + +E HC VIYG+LPP TRR+Q F + E DV+V++DA+G
Sbjct: 268 LIVFSKKSVLALAAHLENEGT-HCSVIYGSLPPATRREQVRRFLAK--ETDVVVSTDAIG 324
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL IRR+VF K++G + ++KQIAGRAGR G +Y +G T +D+LD
Sbjct: 325 MGLNLPIRRIVFVETRKFDGVGKRTLNPEEIKQIAGRAGRYG-LYDEGFVTA--IDELDA 381
Query: 581 LIECLKQ-PFEVVKKVGLFP 599
+ + L + P ++K FP
Sbjct: 382 IKDGLSRLPIPIMKAYVGFP 401
>gi|374289652|ref|YP_005036737.1| putative helicase [Bacteriovorax marinus SJ]
gi|301168193|emb|CBW27782.1| putative helicase [Bacteriovorax marinus SJ]
Length = 878
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 251/464 (54%), Gaps = 36/464 (7%)
Query: 289 ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLL 348
AR +KR IIYH GPTNSGKTY+A++ +AK G Y +PLRLLA E++D +N+ G +LL
Sbjct: 336 ARDIKRTIIYHMGPTNSGKTYHAIEALSKAKTGCYLAPLRLLAGELYDTLNSKGAKTTLL 395
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
TG+E + H + T+EM E++D VIDEIQM++D RG+AWTRAL+ + + EIH
Sbjct: 396 TGEEVIENEGATHFSSTIEMARFGEVFDCCVIDEIQMITDKQRGWAWTRALVNIFSPEIH 455
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
+CGDPS ++V++I GDEL + Y R L V+ K ++ + + D ++ FSRR
Sbjct: 456 VCGDPSAYELVKQIADLCGDELVVKEYTRMTELNVQPKPIV--VGQLEKNDALIVFSRRN 513
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
K +EK ++YG L PE RR+QA F++ E D++V++DA+ MG+NL +R
Sbjct: 514 ALRFKRDLEK-VGFKVSIVYGRLSPEVRREQARKFDE--GETDIIVSTDAISMGMNLPVR 570
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN--------LDD--- 577
R+VF +LSK+ + S++KQIAGRAGR G +P G TTL+ ++D
Sbjct: 571 RIVFSTLSKFIDGHEFIISQSEIKQIAGRAGRFGR-FPTGFVTTLSKVENGIKEINDALS 629
Query: 578 --LDYLIECLKQP-FEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF 634
L +C+ P ++ KV L L + + L F ++
Sbjct: 630 AELSQSTQCMVGPDLDIYNKVN-------NALADNNLPDLKLSEFLRLF-HTMDFKKPFY 681
Query: 635 LCRHDHIKKVANMLEKVQ---GLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV 691
+ + ++A M+E LS + F F APVN + + + + S Y K+ +
Sbjct: 682 CVQLKEMIELAEMVEDTDTEGALSSSEIFGFACAPVNQGLLEHVQYYMWILSHYVKSQDI 741
Query: 692 SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPY 735
+ P S +D + L ET + + +Y WL+ F + F +
Sbjct: 742 ---LNEPIDSKSSDIDYL--ETSIKCVELYQWLARHFSNKNFLF 780
>gi|258574047|ref|XP_002541205.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901471|gb|EEP75872.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 462
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 214/382 (56%), Gaps = 27/382 (7%)
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
M + DVAVIDEIQM+ D RG+AWTRALLG A E+HLCG+ V+ ++R++ + TG
Sbjct: 1 MAPLGQEVDVAVIDEIQMIGDLHRGWAWTRALLGAPAKEVHLCGEERVVPLIRELAALTG 60
Query: 428 DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVI 487
D+L HY+R PL+ +K+L G LR ++ GDCVVAFSR I +K IEK T ++
Sbjct: 61 DKLTIHHYKRLNPLIPMSKSLKGSLRGLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIV 120
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
YG+LP E R QQA+LFND +N++D LVASDA+GMGLNL+ +R++F S+ K + + +
Sbjct: 121 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPSGLQRLS 180
Query: 548 GSQVKQIAGRAGR--------RGSIYPD------GLTTTLNLDDLDYLIECLKQPFEVVK 593
SQVKQI GRAGR S+ P GL T L DL ++ +CL E +
Sbjct: 181 VSQVKQIGGRAGRYRSAAEAIDSSLSPSEENQNVGLVTCLEEVDLPHIQKCLNADPEPIS 240
Query: 594 KVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQ 652
G+ P + F+ + T F LL++ + + +FLC K V +L+ V
Sbjct: 241 AAGILPLDSMILNFSNRFPPTTPFAYLLQRLWKVAQTHPRFFLCELQS-KTVQEILDSVV 299
Query: 653 GLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI---------AMGMPKGSAK 703
GLS D+ F AP + DP L FA+ +++ S+ + P K
Sbjct: 300 GLSPADKLVFLSAPTSTADPTNALTLRAFATCVARHTSGSLLDIPELNLQILDAPVSGDK 359
Query: 704 NDAELLDLETKHQVLSMYLWLS 725
N L LE+ H+ L +YLWLS
Sbjct: 360 N--YLRALESLHRSLVLYLWLS 379
>gi|225386707|ref|ZP_03756471.1| hypothetical protein CLOSTASPAR_00455 [Clostridium asparagiforme
DSM 15981]
gi|225047185|gb|EEG57431.1| hypothetical protein CLOSTASPAR_00455 [Clostridium asparagiforme
DSM 15981]
Length = 710
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 214/348 (61%), Gaps = 12/348 (3%)
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
K + I+ A KP +P AR MKR+ I H GPTNSGKT++AL+R + G Y PL
Sbjct: 151 KTIQKGIKEAIQQKPELEYPGAREMKRRFILHIGPTNSGKTHDALERLKQCAHGAYFGPL 210
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMS 387
RLLA+EV+D++N G+ CS++TG+E +P + ACTVEM++ E +D+AV+DE QM++
Sbjct: 211 RLLALEVYDRLNTEGLACSMITGEETLEIPGALCQACTVEMLNDHEYFDIAVVDECQMIA 270
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVV-EAK 446
D RG+ WTRA+LGL A+EIHLC P D+V ++ GD+ ++R L + E
Sbjct: 271 DPYRGHNWTRAILGLRAEEIHLCMAPEAEDIVVQMIRRCGDQFKIIRHKRNTRLTLQEEP 330
Query: 447 TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506
+LG R+++ GD ++ FS++ + + +E HC VIYG LPP TRR+Q F +
Sbjct: 331 YVLG--RDLKKGDALIVFSKKSVLALAAHLENQ-GVHCSVIYGNLPPATRREQVRRFLAK 387
Query: 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYP 566
+ E V+V++DA+GMGLNL IRR+VF K++G + ++KQIAGRAGR G +Y
Sbjct: 388 ETE--VVVSTDAIGMGLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIAGRAGRYG-LYD 444
Query: 567 DGLTTTLNLDDLDYLIECLKQ-PFEVVKKVGLFPFFEQVELFAGQLSN 613
+G +DD+D + + L + P ++K FP EQ+ Q+
Sbjct: 445 EGFVAA--VDDVDVIADGLSRLPLPIMKAYVGFP--EQLLSLPAQIDT 488
>gi|403221522|dbj|BAM39655.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 679
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 166/496 (33%), Positives = 259/496 (52%), Gaps = 43/496 (8%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEK 353
RK+ H GP NSGKT+ A+ R +AK GIYCSPLRLLA E+ ++N V C+LLTGQEK
Sbjct: 166 RKVYVHIGPPNSGKTHEAISRLSKAKNGIYCSPLRLLAWEMHSRLNRSNVPCALLTGQEK 225
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413
+ NHI+CTVEMV + Y+VAV+DE+QM+ D RGYAWT+A GL E+H+CG
Sbjct: 226 -VDNNENHISCTVEMVPYERSYEVAVLDEMQMVGDRTRGYAWTKAFWGLKTKELHICGSN 284
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVK 473
+ L + RK+ GD L + R L V + L ++ GDCVV FSR E F+++
Sbjct: 285 ACLTLARKLADIRGDTLEVYEHARLGKLKVLDNVV--KLESLEPGDCVVCFSRNEAFKLR 342
Query: 474 MAIEKHTNHH-------------------CCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
IE ++YG+LPPETR +Q FN++D + +L+
Sbjct: 343 DQIESTVYEWDPRDTTIGNTQRKNGDRPITSIVYGSLPPETRCKQIESFNNRDTK--ILI 400
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
ASD +GMG+N++IRR++F L+KY+G + + ++V+QIAGRAGR G +G + +
Sbjct: 401 ASDVIGMGVNVSIRRIIFNKLTKYDGSESRVLNAAEVQQIAGRAGRYGLECGEGEVSCVR 460
Query: 575 LDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL-----SNYTFCQLLEKFGENCRL 629
DL L E + ++K + P E E F L S ++ + + ++
Sbjct: 461 KKDLPVLKELMSTEPPQIEKAVISPSPEVFEAFNLALNQATGSRHSLSDVTQLITSMAKV 520
Query: 630 DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA 689
++ +C + VA LE + L E ++ P+ P + +A+S++
Sbjct: 521 GKNFAMCDFVQVNTVAKCLEGIN-LPFEVYKHYLLVPMG--SPLTSLVVRAYAASHALLN 577
Query: 690 PVSIAMGMPKGSAK----------NDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKA 739
V I+ + + + + E+ LE ++ L +Y WLS++F V+
Sbjct: 578 KVKISNIINEACLELNFDDLNRISANEEVKRLELLYEALDIYTWLSNKFP-SVYVDGNAV 636
Query: 740 EAMATDIAELLGQSLT 755
+ T I+ +L + L+
Sbjct: 637 AELKTKISAVLSRLLS 652
>gi|404370561|ref|ZP_10975883.1| hypothetical protein CSBG_02133 [Clostridium sp. 7_2_43FAA]
gi|226913306|gb|EEH98507.1| hypothetical protein CSBG_02133 [Clostridium sp. 7_2_43FAA]
Length = 585
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 231/384 (60%), Gaps = 32/384 (8%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR + RKI H G TN+GKTY A++R AK G+Y SPLR+LA+E ++K+N
Sbjct: 130 PKDEYRLARNINRKIYIHLGETNTGKTYTAMERLKVAKNGVYLSPLRILALENYEKLNNS 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ L + H +CT+E + YD+A+IDEIQM+ D+ RG AWTRALLG
Sbjct: 190 GVICNLLTGEEEILKEGATHTSCTIEKADLKKEYDIAIIDEIQMIDDSQRGAAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L +EIH+CG + VV KI + D+ + Y+R PL V+ + GD +
Sbjct: 250 LRCNEIHICGALNAKRVVEKIIEDCNDDYEFKEYKRSIPLEVQESNF--NYNYAEEGDAI 307
Query: 462 VAFSRREIFEVKMAIEKHTNH--HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
V FS++++ ++ E++++ +IYG LPPE RR+Q ++F +++N+ VL+ +DA+
Sbjct: 308 VVFSKKKVLQIA---EQYSDMGIKASIIYGDLPPEVRRKQYDMFINKENK--VLITTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
GMG+NL I+R+VF + K++G++I + +VKQ+AGRAGR+G IY G T+ D+
Sbjct: 363 GMGVNLPIKRIVFLDIQKFDGEEIRYLTSQEVKQVAGRAGRKG-IYEVGYVATVR-DNQK 420
Query: 580 YLIECLKQPFEVVKKVGL-----------FPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
++ E L++ +++K L P E++ L+A + + + + +
Sbjct: 421 FIKEKLEEKDKIIKAAVLGPSDAILNIKNLPLNEKLALWATREDSIDYYR---------K 471
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQ 652
+D + +L D IKK + EK+Q
Sbjct: 472 MDINEYLIILDSIKKYK-LKEKIQ 494
>gi|355678524|ref|ZP_09061015.1| hypothetical protein HMPREF9469_04052 [Clostridium citroniae
WAL-17108]
gi|354812478|gb|EHE97094.1| hypothetical protein HMPREF9469_04052 [Clostridium citroniae
WAL-17108]
Length = 668
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/320 (43%), Positives = 205/320 (64%), Gaps = 8/320 (2%)
Query: 281 KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA 340
KP +P AR MKR+ I H GPTNSGKT++AL+R E G Y PLRLLA+EV+DK+NA
Sbjct: 158 KPEEEYPGAREMKRRFILHVGPTNSGKTHDALERLKECGHGAYFGPLRLLALEVYDKLNA 217
Query: 341 LGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
G+ CS++TG+E VP S +CTVEM++ E +D+ V+DE QM++D RG+ WTRA+L
Sbjct: 218 EGLPCSMITGEETLEVPGSICQSCTVEMLNDHEYFDIVVVDECQMIADPYRGHNWTRAVL 277
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
GL ADEIHLC P D+V ++ GD+ ++R L +E+K R+++ GD
Sbjct: 278 GLRADEIHLCMAPEAEDIVVQMIKRCGDQYRVVRHKRNTRLTMESKP-YNLKRDLKKGDA 336
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
++ FS++ + + +E + HC VIYG+LPP TRR+Q F ++ E V+V++DA+G
Sbjct: 337 LIVFSKKSVLALAAHLE-NEGIHCSVIYGSLPPATRREQVRRFLAKETE--VVVSTDAIG 393
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL IRR+VF K++G + ++KQIAGRAGR G +Y +G + +D+ +
Sbjct: 394 MGLNLPIRRIVFVETRKFDGVNKRTLTPEEIKQIAGRAGRFG-LYDEGFVSA--IDEPEV 450
Query: 581 LIECLKQ-PFEVVKKVGLFP 599
+ + L + P ++K FP
Sbjct: 451 IRDGLSRLPIPIMKAYVGFP 470
>gi|357054823|ref|ZP_09115903.1| hypothetical protein HMPREF9467_02875 [Clostridium clostridioforme
2_1_49FAA]
gi|355383869|gb|EHG30942.1| hypothetical protein HMPREF9467_02875 [Clostridium clostridioforme
2_1_49FAA]
Length = 665
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 210/338 (62%), Gaps = 11/338 (3%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
P IKR ++ES KP +P AR MKR+ I H GPTNSGKT++AL+R E + G
Sbjct: 142 IPKTIKR--GILESVK-QKPEQEYPGAREMKRRFILHVGPTNSGKTHDALERLKECRHGA 198
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDE 382
Y PLRLLA+EV+DK+N G+ CS++TG+E VP + +CTVEM++ E +D+ V+DE
Sbjct: 199 YFGPLRLLALEVYDKLNTEGLSCSMVTGEETLEVPGAVCQSCTVEMLNDHEYFDIVVVDE 258
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
QM++D RG+ WTRA+LGL A+EIHLC P D+V ++ GD ++R L
Sbjct: 259 CQMIADPYRGHNWTRAVLGLRAEEIHLCMAPEAEDIVVQMIKRCGDRYRVVRHKRNTRLT 318
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
+E K R+++ GD ++ FS++ + + +E + HC VIYG+LPP TRR+Q
Sbjct: 319 MEKKP-YNLKRDLKKGDALIVFSKKSVLALAAHLE-NEGIHCSVIYGSLPPATRREQVRR 376
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
F ++ E V+V++DA+GMGLNL IRR+VF K++G + ++KQIAGRAGR G
Sbjct: 377 FLARETE--VVVSTDAIGMGLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIAGRAGRYG 434
Query: 563 SIYPDGLTTTLNLDDLDYLIECL-KQPFEVVKKVGLFP 599
+Y +G +D+ + + + L + P ++K FP
Sbjct: 435 -LYDEGFVAA--IDEAEVIEDGLSRMPMPIMKAYVGFP 469
>gi|392378293|ref|YP_004985453.1| putative helicase [Azospirillum brasilense Sp245]
gi|356879775|emb|CCD00701.1| putative helicase [Azospirillum brasilense Sp245]
Length = 755
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 249/461 (54%), Gaps = 34/461 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR M RK+ GPTNSGKT+ A+ R EA G Y +PLRLLA+E + + G C
Sbjct: 200 FATARAMVRKLRLFVGPTNSGKTHAAMDRLAEAPSGCYLAPLRLLALEGQEALETRGRAC 259
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+E+ + P ++ + T+EMV+T +++ VIDEIQM+ D RG+AWT+A+ G+ A
Sbjct: 260 SLVTGEERDVRPGASFTSSTIEMVNTSKVWGACVIDEIQMIGDPDRGWAWTQAVAGVAAP 319
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
EI + G + V+++ + G+EL + R PL V+ + + L NVR GD V+AFS
Sbjct: 320 EILMTGSADAIPYVQRLATALGEELEVVEFTRKSPLRVQEERV--PLENVRRGDAVIAFS 377
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R+++ ++ + +H VIYGAL PE RR +A F +D DVLVA+DA+GMGLNL
Sbjct: 378 RKDVMGLRRELLAR-DHTVAVIYGALSPEVRRAEARRF--RDGTADVLVATDAIGMGLNL 434
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+ RVV + KY+G + + S+++QI GRAGR G ++ +G L ++++ + L
Sbjct: 435 PVARVVLSTTRKYDGREERDLNSSEIRQIGGRAGRFG-MHEEGRVAVLEGENINPVRRAL 493
Query: 586 KQPFEVVK--KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKK 643
P + + + P VE A +L + ++L G+ L R + +
Sbjct: 494 TTPPVPPEDPRTWISPNLTHVEAIARELDTDSLAKVLRTAGQE--------LLRANQTFR 545
Query: 644 VANMLEKVQGLSLEDRFNFCFA--------PVNIRDPKAMYHLLRFASSYSKNAPVSIAM 695
+ ++ +++Q + DR A P+++RD + LR + ++ N +
Sbjct: 546 MTDLEQRIQAATAVDRAKLPLAERDMLARCPIDVRD----QNNLRLLALWATNQGKGVRN 601
Query: 696 GMPKGSAK------NDAELLDLETKHQVLSMYLWLSHQFKE 730
P + + D EL E + L+ Y WL+++F +
Sbjct: 602 SAPDAAERFHHRVGTDVELEKAERAVKELTAYAWLAYRFPD 642
>gi|293375148|ref|ZP_06621436.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325838835|ref|ZP_08166682.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
gi|292646254|gb|EFF64276.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325490698|gb|EGC93007.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
Length = 588
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 158/453 (34%), Positives = 260/453 (57%), Gaps = 44/453 (9%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR +KRKI H G TN+GKT+ A++R +++KG+Y +PLR+LA+E+++++N
Sbjct: 131 PKDEYQEARNLKRKIYLHLGQTNTGKTHRAIERLKQSQKGVYLAPLRILALEIYERLNKE 190
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+LLTG+E+ ++P +NH + TVE V+ D+ YDVAVIDEIQM+ D RG +WTRALLG
Sbjct: 191 GVPCTLLTGEEEVIIPEANHQSSTVEKVNLDQTYDVAVIDEIQMIGDYQRGSSWTRALLG 250
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ ++ + GDE YER PLV+E + + ++ + GD
Sbjct: 251 LRCSEIHVCGALNAKEILLEMIKDCGDEFEVIEYERLVPLVIEKEPF--NHQDTQEGDAF 308
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
+ FS+R++ ++ K + VIYG LPPE R+ Q F + N +LV++DA+GM
Sbjct: 309 ILFSKRKVLQLAKQY-KEMGINASVIYGDLPPEVRKMQYYDFVHKKNL--ILVSTDAIGM 365
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-----------LT 570
G+NL IRR+VF +L K++G++ + +VKQIAGRAGR G IY G L
Sbjct: 366 GVNLPIRRIVFMNLCKFDGEEERFLTSQEVKQIAGRAGRIG-IYEVGYVAGYGRSYSFLK 424
Query: 571 TTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630
+ ++D D + + + P EV+ ++ P E++ L++ ++
Sbjct: 425 EKIEMED-DPIEQAVIGPSEVLLQIEGLPLKEKLALWS-----------------TMPVE 466
Query: 631 GSYFLCRHDHIKKVANMLEKVQGLSLED--RFNFCFAPVNIRDPKAMYHLLRFASSYSKN 688
Y+ R I+ +L+KV+ L++ + P+++ + + + LL F SY
Sbjct: 467 TLYY--RKMDIRDYILVLDKVRRYKLDEYVEWKLMKLPIDVHNDEVLSTLLFFIESYF-- 522
Query: 689 APVSIAMGMPKGSAKNDAELLDLETKHQVLSMY 721
V +P+ + L +LET +Q +++Y
Sbjct: 523 --VQKVGEVPRPHL-GEVNLSNLETYYQEVNLY 552
>gi|156402846|ref|XP_001639801.1| predicted protein [Nematostella vectensis]
gi|156226931|gb|EDO47738.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 209/336 (62%), Gaps = 7/336 (2%)
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
G+++DE+H+CG+ + + +++++ GDE HY+R L V +L G L VR GDC
Sbjct: 1 GVVSDEVHVCGEDTAVGLIKRLAKTCGDEFEVFHYDRLSQLQVLPYSLGGQLHQVRPGDC 60
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFS+RE+F+++ IEK C ++YG LPP TR +QA FN+ D+E +L+ASDA+G
Sbjct: 61 IVAFSQRELFKLRQRIEKAKVTKCAIVYGGLPPATRVEQAAKFNNPDDEHKILIASDAIG 120
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNLNI+R++F+++ K++G + + S VKQIAGRAGR GS YP G TTL L
Sbjct: 121 MGLNLNIKRIIFHAMEKFDGQSVTQLTASHVKQIAGRAGRYGSEYPKGEVTTLYASSLPT 180
Query: 581 LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDG-SYFLCRHD 639
L + + QP + V++ GL P EQ+E+ + QL N T L++ F + +LDG +YF+C +
Sbjct: 181 LKKLMSQPSDEVQRAGLSPSVEQIEMLSHQLPNATLGDLVDLFLDVAQLDGENYFMCDLE 240
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----A 694
+++ +A ++E + L++ ++++ C APV+ + ++ FA S+ +
Sbjct: 241 NVQYLAELVEGIP-LTIWEQYSICQAPVSRNRTLSASVIVEFARRVSEKRETKVIDVKEM 299
Query: 695 MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+ P K+ L D+E H+V +YLWLS++F E
Sbjct: 300 VRWPPVMPKSLKTLQDVEAVHEVCDVYLWLSYRFPE 335
>gi|255524643|ref|ZP_05391596.1| helicase domain protein [Clostridium carboxidivorans P7]
gi|255511667|gb|EET87954.1| helicase domain protein [Clostridium carboxidivorans P7]
Length = 585
Score = 258 bits (659), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 255/463 (55%), Gaps = 44/463 (9%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR + RK H G TN+GKTYNA+QR +AK G+Y SPLR+LA+E ++++N+
Sbjct: 130 PKDEYEHARKLIRKFYLHLGETNTGKTYNAMQRLKQAKNGVYLSPLRILALENYERLNSE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV CSL+TG+E+ +V + HI+CT+E + +E YD+A+IDEIQM++D RG AWTRALLG
Sbjct: 190 GVKCSLMTGEEEIIVEGAQHISCTIEKLDVNEEYDIAIIDEIQMINDDQRGAAWTRALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + D+ + Y+R PLV+E + ++++ GD +
Sbjct: 250 LNCKEIHICGAINSKELLIDIIEDCQDQYEFKEYKRSIPLVMEYGSF--SRKSIQDGDAL 307
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
V FS++ + E+ +IYG LPPE RR+Q F ++ E +LV +DA+GM
Sbjct: 308 VVFSKKRVLELAYYY-GSLGIKASLIYGDLPPEVRRKQYEQFINK--ETKILVTTDAIGM 364
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-----------LT 570
G+NL IRR++F ++ K++G ++ + +VKQIAGRAGR+G IY G +
Sbjct: 365 GVNLPIRRIIFMNVKKFDGSQVRFLNSQEVKQIAGRAGRKG-IYDIGYVASYGGTQEFIN 423
Query: 571 TTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630
+N+ D + E + P EV+ K+ P E++ L++ R +
Sbjct: 424 EMINVRDRT-IEEAVIGPSEVILKIKSLPLREKLALWS------------------TREE 464
Query: 631 GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASSYSKN 688
YF + D I + +L+ ++ L+++ + P ++ +P M L +
Sbjct: 465 KMYFYRKMD-ISEYIIVLDNIKSYKLDEKMEWTLLKIPFDVSNPTMMDAFLSYVDELF-- 521
Query: 689 APVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEE 731
S + P K+ L +LE +Q +++Y S F E
Sbjct: 522 IAHSDVISKPTCLIKD---LNELELYYQKINLYYSFSKIFNLE 561
>gi|302668561|ref|YP_003833009.1| helicase domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302397525|gb|ADL36427.1| helicase domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 699
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 194/302 (64%), Gaps = 8/302 (2%)
Query: 284 TWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV 343
T FP AR MKR + H GPTNSGKTY A+Q MEA GIY +PLRLLA E ++ +N G
Sbjct: 204 TLFPLARKMKRHFVLHIGPTNSGKTYQAVQELMEADSGIYLAPLRLLAYEQYESMNNNGC 263
Query: 344 YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
CS++TG+E+ LVP S H + T+EM+S + +D+A+IDE QM++D RG +WT A+LGL
Sbjct: 264 PCSMITGEERILVPGSFHQSSTIEMMSIRDEWDMAIIDEAQMVADRQRGGSWTAAILGLR 323
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR---NVRSGDC 460
A +IH+C P ++ ++ GD + H+ER PL ++ + + R +V+ GD
Sbjct: 324 AKKIHVCASPDAEKLLTRMIKSCGDIMEVVHHERKTPLEMDEEA--SNFRFPEDVKKGDA 381
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
++ FSR+++ V ++ + C +IYG+LP + R ++A F D E DV+VA+DA+G
Sbjct: 382 LIVFSRKDVHSVAAELQD-SGLTCSIIYGSLPYDVRHREAGKF--ADGETDVVVATDAIG 438
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MG+NL IRRVVF KY+G K P+ S++KQIAGRAGR G +T+ + D + Y
Sbjct: 439 MGMNLPIRRVVFLETVKYDGIKERPLTVSEIKQIAGRAGRYGKYDVGYVTSYYDYDIIKY 498
Query: 581 LI 582
L+
Sbjct: 499 LV 500
>gi|152992621|ref|YP_001358342.1| hypothetical protein SUN_1028 [Sulfurovum sp. NBC37-1]
gi|151424482|dbj|BAF71985.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 938
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 169/486 (34%), Positives = 263/486 (54%), Gaps = 13/486 (2%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR +KRKI++H GPTNSGKTY ALQ EA G Y +PLRLLA+E ++ + GV+
Sbjct: 426 FPLARELKRKIVFHVGPTNSGKTYTALQELKEATTGYYLAPLRLLALEGYENLKKEGVHV 485
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+E+ + S HI+ T+EM++ DV VIDEIQM+SD RG+AW AL+G A
Sbjct: 486 SLVTGEEEIIDEESTHISSTIEMMNNAVDVDVCVIDEIQMISDRDRGWAWANALIGAPAK 545
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
++ L G + L V +C G+EL H+ER LV L ++ + VVAFS
Sbjct: 546 KVILTGSANALHAVEALCEYLGEELEVVHFERKNELVTMKHPL--SMKKIEPQTAVVAFS 603
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +K + + + V+YG L PE RR++A F + +++ +LV++DA+ MGLNL
Sbjct: 604 RREVLSLKQQLSE--RYSVSVVYGNLSPEVRREEARRFREGESQ--ILVSTDAIAMGLNL 659
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
I+ ++F +K++G + + ++V+QIAGRAGR G G L+ LD + +
Sbjct: 660 PIKTLLFAKDNKFDGLRRRELLPTEVQQIAGRAGRYG-FEEKGYVGALDTAALDTVSKAF 718
Query: 586 KQPF-EVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKV 644
P ++ V + E V L L +L F +N DG + D + ++
Sbjct: 719 HAPLADIELPVSVMASLEHVMLIGEILETENITTILGFFADNMEFDGPFMAANIDSMLEI 778
Query: 645 ANMLEKVQGLSLEDRFNFCFAPVNIRDP--KAMYHLLRFASSYSKNAPVSIAMGMPKGSA 702
A ++++ L L+ RF AP +I P ++++H K +PK +
Sbjct: 779 AAIVDEYD-LDLKTRFYLSCAPASISSPYIESVFHRYIKQIEAGKKVRYIPPRDLPKFAQ 837
Query: 703 KNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPE 762
ND LL+ E + + +S+YLWLS +F +F +KA + + SL ++ +
Sbjct: 838 TNDM-LLNAEDRVREISLYLWLSFKFP-NMFEDTEKAIQARVRLNNYIENSLRQGHFTKQ 895
Query: 763 SRQAGK 768
R+ GK
Sbjct: 896 CRKCGK 901
>gi|182417417|ref|ZP_02948745.1| ATP-dependent RNA helicase, superfamily II [Clostridium butyricum
5521]
gi|237667662|ref|ZP_04527646.1| helicase domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378731|gb|EDT76257.1| ATP-dependent RNA helicase, superfamily II [Clostridium butyricum
5521]
gi|237656010|gb|EEP53566.1| helicase domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 584
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 249/457 (54%), Gaps = 38/457 (8%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR MKRK H G TN+GKTY AL+R AKKG+Y SPLR+LA+E ++K+N
Sbjct: 129 PKDEYKQARSMKRKFYIHLGDTNTGKTYTALERLKIAKKGVYLSPLRILALENYEKLNNE 188
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C LLTG+E+ + S H++CT+E V+ E YD+AVIDEIQM+SD RG AW++++LG
Sbjct: 189 GVKCDLLTGEEEIVNADSTHVSCTIERVNLKEHYDIAVIDEIQMISDPFRGMAWSKSVLG 248
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L DEIH+CG + +++ + + DE + Y+R PLVVE +V+ GD +
Sbjct: 249 LQCDEIHVCGALNAKNLLIDMIEDCKDEYEIKEYKRAIPLVVEDTNF--SYNHVKDGDAL 306
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
V FS++ + E+ + C +IYG LPPE R+ Q F ++ E VLV +DA+GM
Sbjct: 307 VVFSKKRVLEIAQEYSER-GIKCSIIYGDLPPEVRKMQYEQFVNK--ETKVLVTTDAIGM 363
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-------- 573
G+NL I+R+VF S+ K++G+++ + ++KQ+ GRAGR G IY G +
Sbjct: 364 GVNLPIQRIVFMSIRKFDGEEVRELTSQEIKQVGGRAGRIG-IYDVGYVAAVGGNSHIIK 422
Query: 574 -NLDDLDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDG 631
++ D IE + P + + + P E++ L++ + EK ++D
Sbjct: 423 EKIEREDAPIERAVIGPSDAILSIKSLPLNEKLALWSTR---------KEKVEYYTKMDI 473
Query: 632 SYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV 691
S +L D IKK +LE+VQ ++ P ++ + M L + N
Sbjct: 474 SEYLYILDKIKKY-KLLEEVQ-------WDLLKVPFDVSRDELMDTFLDYVDELFVNKQK 525
Query: 692 SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ P+ N L +LE +Q ++MY S F
Sbjct: 526 K--LFEPQCFGGN---LDELEIYYQKINMYYSFSKIF 557
>gi|187779986|ref|ZP_02996459.1| hypothetical protein CLOSPO_03582 [Clostridium sporogenes ATCC
15579]
gi|187773611|gb|EDU37413.1| helicase C-terminal domain protein [Clostridium sporogenes ATCC
15579]
Length = 588
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 159/467 (34%), Positives = 252/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYREVRYMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C L+TG+E+ S HI CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GVVCDLITGEEEIKKKGSKHICCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LKCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--RLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE RR+Q F +D+ ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRRKQYEQFISKDS--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR++F + K++G+ + + +VKQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIIFMDIRKFDGNDMRYLTSQEVKQIGGRAGRFG-IYDIGYIASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNDFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPKLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|71034089|ref|XP_766686.1| ATP-dependent DEAD box helicase [Theileria parva strain Muguga]
gi|68353643|gb|EAN34403.1| ATP-dependent DEAD box helicase, putative [Theileria parva]
Length = 690
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 191/609 (31%), Positives = 295/609 (48%), Gaps = 85/609 (13%)
Query: 181 NRSDFEV-LREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLV 239
N S+F+ LR F NS + +L Y+ KS F+S+F Q L
Sbjct: 54 NISNFDQNLRIPLFFIKNSDF--RNSLISYLDKS------NDFKSFF--------RQNLA 97
Query: 240 WLGPS--DDAVKFLFPIFVE-FCIEEFPDEIKRFRAMIESADLTKP----HTWFPFAR-- 290
L + D+ + F F+E F + FP+ F + +D +K H + F+
Sbjct: 98 LLNENNFDEDLHLDFLKFIETFIKDNFPNVFITFNNLKHFSDFSKISNLYHNYTNFSNNT 157
Query: 291 --------VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
+ R + H GP NSGKT+++++ + + GIYC+PLRLLA E+F+ +N G
Sbjct: 158 SGLCSNDVTIGRNVYLHVGPPNSGKTHDSIKALLSSGSGIYCAPLRLLAWEMFNTINNSG 217
Query: 343 VYCSLLTGQEKKLVPFSN-HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
V CSLLTGQE LV H++CTVEM+ + ++VAV+DE+QM+ D RGY+WT+A L
Sbjct: 218 VKCSLLTGQE--LVDNGEPHVSCTVEMIPFERTFEVAVLDEMQMVGDLTRGYSWTKAFLS 275
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L E+H+CG S + + + + GD+L +ER L V K + L + GDCV
Sbjct: 276 LNVPELHICGSKSCISITANLANIRGDKLEIFEHERLCNLKVMDKAV--GLSELEPGDCV 333
Query: 462 VAFSRREIFEVKMAIEKH-------TNHHCC--VIYGALPPETRRQQANLFNDQDNEFDV 512
V FSR + F ++ IE + C ++YG LPPETR Q FN V
Sbjct: 334 VCFSRYDAFNLRNIIESTKYSWNTLSKEECVTSIVYGLLPPETRYDQIERFNKGLTR--V 391
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
LVASD +GMG+N++IRRV+FY L+K++G+ P+ S+V QIAGRAGR G I +G +
Sbjct: 392 LVASDVIGMGVNVSIRRVIFYRLTKFDGNVSRPLTVSEVHQIAGRAGRFG-ISSEGFVSC 450
Query: 573 LNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-----FCQLLEKFGENC 627
+ DL L E + Q ++K + P + + F L ++T + + G
Sbjct: 451 VREQDLPTLREVMAQEVTQIEKAVISPPLDTIGAFYSSLKHFTGEQHSLLNITKLIGSIG 510
Query: 628 RLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN-------IRDPKAMYHLLR 680
R+ + +C I V+ LE + L + + P+ +R A + LL
Sbjct: 511 RVGQGFMMCDFAQINSVSRCLEGIN-LPFDILKEYLMVPMGSTLVSLIVRAFAASHSLLN 569
Query: 681 -----------FASSYSKNAPVSIAMGMPKGSAK----------NDAELLDLETKHQVLS 719
F + + N+ ++E+ LE ++VL
Sbjct: 570 SVKISNIIQADFLAHNTTNSSNLNDNLDNNLDNNLDDNLDNNLCKNSEIKRLELLYEVLD 629
Query: 720 MYLWLSHQF 728
+Y+WLS++F
Sbjct: 630 IYVWLSNKF 638
>gi|160935116|ref|ZP_02082499.1| hypothetical protein CLOBOL_00011 [Clostridium bolteae ATCC
BAA-613]
gi|158441847|gb|EDP19544.1| hypothetical protein CLOBOL_00011 [Clostridium bolteae ATCC
BAA-613]
Length = 665
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 211/340 (62%), Gaps = 15/340 (4%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
P IK+ ++ES KP +P AR MKR+ I H GPTNSGKT++AL+R E + G
Sbjct: 142 IPKTIKK--GILESVK-QKPEQEYPGAREMKRRFILHVGPTNSGKTHDALERLKECRHGA 198
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDE 382
Y PLRLLA+EV+DK+N G+ CS++TG+E VP + +CTVEM++ E +D+ V+DE
Sbjct: 199 YFGPLRLLALEVYDKLNTEGLSCSMVTGEETLEVPGAVCQSCTVEMLNDHEYFDIVVVDE 258
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
QM++D RG+ WTRA+LGL A+EIHLC P D+V ++ GD+ ++R L
Sbjct: 259 CQMIADPYRGHNWTRAVLGLRAEEIHLCMAPEAEDIVVQMIKRCGDQYRVVRHKRNTRLT 318
Query: 443 VEAK--TLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
+E K L DL+ GD ++ FS++ + + +E + HC VIYG+LPP TRR+Q
Sbjct: 319 MEKKPYNLKQDLKK---GDALIVFSKKSVLALAAHLE-NEGIHCSVIYGSLPPATRREQV 374
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F ++ E V+V++DA+GMGLNL IRR+VF K++G + ++KQIAGRAGR
Sbjct: 375 RRFLARETE--VVVSTDAIGMGLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIAGRAGR 432
Query: 561 RGSIYPDGLTTTLNLDDLDYLIECL-KQPFEVVKKVGLFP 599
G +Y +G +D+ + + + L + P ++K FP
Sbjct: 433 YG-LYDEGFVAA--IDEPEVIEDGLSRMPMPIMKAYVGFP 469
>gi|315636701|ref|ZP_07891931.1| ATP-dependent RNA helicase [Arcobacter butzleri JV22]
gi|315479016|gb|EFU69719.1| ATP-dependent RNA helicase [Arcobacter butzleri JV22]
Length = 530
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 263/479 (54%), Gaps = 22/479 (4%)
Query: 284 TWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV 343
T +P AR + RK+ ++ GPTNSGKTYNA+Q+ EA G+Y +PLRLLA+E ++ + +
Sbjct: 19 TLYPLARSINRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 78
Query: 344 YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
SL+TG+E+ L ++H+ T+EM+ D DVAVIDE+QM+ D RG+AW A++G
Sbjct: 79 NASLITGEEQILDIEASHVCSTIEMLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCP 138
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
A +I + G + LD V+KI + ++L + R L + K L + G ++A
Sbjct: 139 AKKIIMTGSVNALDAVKKIAAYLDEDLEVIKHTRKNELKILDK--WTSLEKLEDGTALIA 196
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSR ++ ++K ++K + VIYG L PE RR +A F ++ ++ +L+A+DA+ MGL
Sbjct: 197 FSRSDVLKLKQRLQKK--YVVSVIYGNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGL 252
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583
NL I+ ++F + +K++G + +++ QIAGRAGR G + G D L Y+ E
Sbjct: 253 NLPIKTILFTTDTKFDGVSRRKITVNEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKE 311
Query: 584 CLKQPFEVVKKVGLFPFFE------QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
+ P + +K P F+ Q+E + + + ++L+ F +N +G +
Sbjct: 312 EFESPIKTIK-----PPFKVKINNNQLEALSSHIKTNSLTKILKFFADNMSFNGPFVAAN 366
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP--VSIAM 695
+ + A +++ GLSLE+++ AP+ + + + +S K ++
Sbjct: 367 ISSMIEAARIVDNKNGLSLEEKYLLAQAPITTKSTIILQAYDSYIASVIKKRVNHYKPSI 426
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
+PK A +LL +E + + +S+YLWLS++ E+FP KA + + +SL
Sbjct: 427 TLPK-KAITQKDLLLVEDEVKKISLYLWLSYKL-PELFPDHDKAYILRNSFNSFIEKSL 483
>gi|384156713|ref|YP_005539528.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345470267|dbj|BAK71718.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 530
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 262/479 (54%), Gaps = 22/479 (4%)
Query: 284 TWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV 343
T +P AR + RK+ ++ GPTNSGKTYNA+Q+ EA G+Y +PLRLLA+E ++ + +
Sbjct: 19 TLYPLARSINRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 78
Query: 344 YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
SL+TG+E+ L ++H+ T+EM+ D DVAVIDE+QM+ D RG+AW A++G
Sbjct: 79 NASLITGEEQILDIEASHVCSTIEMLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCP 138
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
A +I + G + LD V+KI ++L + R L + K L + G ++A
Sbjct: 139 AKKIIMTGSVNALDAVKKIAVYLDEDLEVIKHTRKNELKILDK--WTSLEKLEDGTALIA 196
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSR ++ ++K ++K + VIYG L PE RR +A F ++ ++ +L+A+DA+ MGL
Sbjct: 197 FSRSDVLKLKQRLQKK--YAVSVIYGNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGL 252
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583
NL I+ ++F + +K++G + +++ QIAGRAGR G + G D L Y+ E
Sbjct: 253 NLPIKTILFTTDTKFDGVSRRKITVNEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKE 311
Query: 584 CLKQPFEVVKKVGLFPFFE------QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
+ P + +K P F+ Q+E + + + ++L+ F +N +G +
Sbjct: 312 EFESPIKTIK-----PPFKVKINNNQLEALSSHIKTNSLTKILKFFADNMSFNGPFVAAN 366
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP--VSIAM 695
+ + A +++ GLSLE+++ AP+ + + + +S K ++
Sbjct: 367 ISSMIEAARIVDNKNGLSLEEKYLLAQAPITTKSTIILQAYDSYIASVIKKRVNHYKPSI 426
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
+PK A +LL +E + + +S+YLWLS++ E+FP KA + + +SL
Sbjct: 427 TLPK-KAITQKDLLLVEDEVKKISLYLWLSYKL-PELFPDHDKAYILRNSFNSFIEKSL 483
>gi|440784950|ref|ZP_20961987.1| ATP-dependent RNA helicase suv3 precursor [Clostridium pasteurianum
DSM 525]
gi|440218600|gb|ELP57819.1| ATP-dependent RNA helicase suv3 precursor [Clostridium pasteurianum
DSM 525]
Length = 585
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 252/462 (54%), Gaps = 38/462 (8%)
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
+ P + AR +KRK H G TN+GKTYNA+ R + KGIY SPLR+LA+E ++++N
Sbjct: 128 SNPKDEYSAARRLKRKFYLHLGETNTGKTYNAMMRLKQCNKGIYLSPLRILALENYERLN 187
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
+ GV CSL+TG+E+ +V + HI CT+E + E+YDVAVIDE+QM+ D RG AWTRA+
Sbjct: 188 SEGVKCSLITGEEEIIVEGAQHICCTIEKLDIKEIYDVAVIDEVQMIDDDQRGAAWTRAI 247
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
LG+ +EIH+CG + ++ I + D+ + Y R PL ++ +T R+ GD
Sbjct: 248 LGIQCNEIHVCGAYNASPLLLDIIEDCNDKYKLKRYIRDIPLKIDYRTFA--YRDAEEGD 305
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
+VAFS++ + + + +IYG LPPE R++Q F ++ E +L+ +DA+
Sbjct: 306 ALVAFSKKMVLNLAYYYS-NMGIKASIIYGDLPPEVRKKQYEQFINK--ETKILITTDAI 362
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL------ 573
GMG+NL I+R+VF + K++G+++ + +VKQIAGRAGR+G IY G T
Sbjct: 363 GMGVNLPIKRIVFMDIKKFDGNEMRYLKSQEVKQIAGRAGRKG-IYDTGYVATYNKVQDF 421
Query: 574 ---NLDDLDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
NLD D +IE + P E + K+ E++ L+ + EK ++
Sbjct: 422 IRENLDIEDRIIEQAVVGPSEEILKIKELSLREKLALWKTK---------EEKLSYYRKM 472
Query: 630 DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA 689
D + +L D I KV + +K+Q L+ P ++ + + L Y
Sbjct: 473 DVNEYLKVLDSI-KVYRLEDKIQWRLLK-------IPFDVSNEDMLNAFL----FYVDEI 520
Query: 690 PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEE 731
V+ + K S N EL DLE +Q +++Y S F E
Sbjct: 521 FVAKKHNISKPSC-NLKELYDLEIFYQKINLYYSFSKAFNLE 561
>gi|296114989|ref|ZP_06833633.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978451|gb|EFG85185.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
Length = 814
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 169/482 (35%), Positives = 260/482 (53%), Gaps = 19/482 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK++ AL A+ G+ +PLRLLA E + + A GV
Sbjct: 305 FTTARALKRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPT 364
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ VP S H+A TVEM + DVA+IDE QM++D RG AWT A++G A
Sbjct: 365 SLATGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPAR 424
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +VR+I GD + E H ER PLV A + +++++ D ++AFS
Sbjct: 425 HLFILGAPDCIPMVRRIAELCGDPVDEVHLERKSPLV--AADMPVRIQDLQPHDALIAFS 482
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ + H V+YGAL PE RR +A FN E D+L+A+DA+GMGLNL
Sbjct: 483 RREVLDLRALLLAH-GRRVAVVYGALSPEVRRAEAQRFN--RGEADILIATDAIGMGLNL 539
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIEC 584
IRRVVF +L K++G + + +VKQI GRAGR G + G+ + L + ++
Sbjct: 540 TIRRVVFAALRKFDGTQTRDLNAQEVKQIGGRAGRFGK-HEKGIVSVLEGVGSPSFIHAM 598
Query: 585 LKQPFEVVK--KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRHDH 640
L P + + + P + V+ A ++ + + +L + R D +Y L +
Sbjct: 599 LAAPPAQLDDLRPQVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANMEQ 658
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN--APVSIAMGMP 698
+A LE V+GL+L R+ + PV+ RD + L+ +A+ ++ P +P
Sbjct: 659 AFAIATALEGVEGLTLAQRWVYAMCPVDDRD-NGIQRLVGWAADHAAGHAVPPPGTGRLP 717
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATD----IAELLGQSL 754
+EL E +H+ L + WL+ +F + +P + AE T I E+L Q
Sbjct: 718 PAERAERSELERAEKRHKRLVAWRWLALRFP-DAYPDRENAEIATTRLNDWIEEVLRQQS 776
Query: 755 TN 756
T
Sbjct: 777 TR 778
>gi|157738406|ref|YP_001491090.1| ATP-dependent RNA helicase [Arcobacter butzleri RM4018]
gi|157700260|gb|ABV68420.1| probable ATP-dependent RNA helicase [Arcobacter butzleri RM4018]
Length = 544
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 154/480 (32%), Positives = 264/480 (55%), Gaps = 24/480 (5%)
Query: 284 TWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV 343
T +P AR + RK+ ++ GPTNSGKTYNA+Q+ EA G+Y +PLRLLA+E ++ + +
Sbjct: 33 TLYPLARSINRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 92
Query: 344 YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
SL+TG+E+ L ++H+ T+EM+ D DVAVIDE+QM+ D RG+AW A++G
Sbjct: 93 NASLITGEEQILDIEASHVCSTIEMLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCP 152
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
A +I + G + LD V+KI + ++L + R L + K L + G ++A
Sbjct: 153 AKKIIMTGSVNALDAVKKIAAYLDEDLEVIKHTRKNELKILDK--WTSLEKLEDGTALIA 210
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSR ++ ++K ++K + VIYG L PE RR +A F ++ ++ +L+A+DA+ MGL
Sbjct: 211 FSRSDVLKLKQRLQKK--YAVSVIYGNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGL 266
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL-- 581
NL I+ ++F + +K++G + +++ QIAGRAGR G + G D L Y+
Sbjct: 267 NLPIKTILFTTDTKFDGVSRRKITVNEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKE 325
Query: 582 -----IECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLC 636
I+ +K PF+V K+ Q+E + + + ++L+ F +N +G +
Sbjct: 326 EFESSIKTIKPPFKV--KIN----NNQLEALSSHIKTNSLTKILKFFADNMSFNGPFVAA 379
Query: 637 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP--VSIA 694
+ + A +++ GLSLE+++ AP+ + + + +S K +
Sbjct: 380 NISSMIEAARIVDNKNGLSLEEKYLLAQAPITTKSTIILQAYDSYIASVIKKRVNHYKPS 439
Query: 695 MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
+ +PK A +LL +E + + +S+YLWLS++ E+FP KA + + +SL
Sbjct: 440 ITLPK-KAITQKDLLLVEDEVKKISLYLWLSYKL-PELFPDHDKAYILRNSFNSFIEKSL 497
>gi|288957948|ref|YP_003448289.1| hypothetical protein AZL_011070 [Azospirillum sp. B510]
gi|288910256|dbj|BAI71745.1| hypothetical protein AZL_011070 [Azospirillum sp. B510]
Length = 733
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 248/482 (51%), Gaps = 13/482 (2%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D ++ FP AR M R+++ GPTNSGKT+ A+ EA+ G+Y +PLRLLA+EV ++
Sbjct: 236 DFSRFERLFPVARGMNRRLVLVIGPTNSGKTHRAITALREARDGVYLAPLRLLALEVMER 295
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+NA G +L+TG+E+ P + H A T+E++ D +VAVIDEIQM++D RG+AWT
Sbjct: 296 LNAEGTPTTLITGEEEIRTPGARHTASTIEVMDPDRPVEVAVIDEIQMLADPARGWAWTA 355
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
AL+G+ A+ +++ G P V +V + + G+ L R PL + + L + V
Sbjct: 356 ALMGVPAETVYILGAPEVRPLVERAAAHLGEPLEVVELARKTPLSMLDRRL--EWAEVER 413
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GD ++AFSRRE+ V+ + IYGAL P RR++A F E DV+VA+D
Sbjct: 414 GDALIAFSRREVHSVRDTLLAQ-GLSVAAIYGALAPAVRRREAARF--LSGEADVVVATD 470
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--GLTTTLNL 575
A+GMGLNL RRV+F +L K++G + P+ ++VKQIAGRAGR G G+
Sbjct: 471 AIGMGLNLPCRRVLFTALEKFDGSAVRPLTATEVKQIAGRAGRFGQFEEGHFGVIARGAP 530
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635
L L+E + + + P + A + + L+E FG + L
Sbjct: 531 AALKRLLEAPDRSLRADAPLPVRPTRAMLARLASHIDSDETRLLVECFGSADTAGSPFRL 590
Query: 636 CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAM 695
+++ A ML+ + L+L + AP ++ + + + + +A
Sbjct: 591 ADLSALRRAAPMLD-ARRLALSAKLELLLAPADLEEAEDAKVFAAILDAVEAGEVLPLAR 649
Query: 696 GMPKGSAKNDAELLD-LETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSL 754
+P A+ D D LE + +Y W + +F + P ++ I + L ++L
Sbjct: 650 LIP---ARFDGLAADVLEAASRACDLYFWAARKFP-DALPDRERVRGARDAIGQRLSEAL 705
Query: 755 TN 756
+
Sbjct: 706 AS 707
>gi|296274442|ref|YP_003657073.1| helicase domain-containing protein [Arcobacter nitrofigilis DSM
7299]
gi|296098616|gb|ADG94566.1| helicase domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 512
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 164/510 (32%), Positives = 276/510 (54%), Gaps = 29/510 (5%)
Query: 284 TWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV 343
+ +P AR MKR++ + GPTNSGKTY A+ +A G+Y +PLRLLA+E ++ + G+
Sbjct: 19 SLYPLARTMKRELHFFVGPTNSGKTYKAMTELKKADCGLYLAPLRLLALEGYEDLTKEGI 78
Query: 344 YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
SL+TG+E+ L + H+ T+EM+ + DVA+IDE+QM+ D RG+AW A++G
Sbjct: 79 PASLITGEEQNLNEDAAHVCSTIEMIDFNMDVDVAIIDEVQMLDDDDRGWAWVNAIIGCP 138
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-VVEAKTLLGDLRNVRSGDCVV 462
A +I + G + L+ V+KI + ++L + ++R L +++ T LG N+ SG ++
Sbjct: 139 AKKIIMTGSVNALEAVKKIAAYLEEDLIIEKFKRKNELELLDKHTALG---NLESGTALI 195
Query: 463 AFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522
AFSR ++ ++K H +IYG L PE RR +A F D+ E D+L+A+DA+ MG
Sbjct: 196 AFSRSDVLKLKQK--LQKKHKISIIYGNLSPEVRRDEARRFRDK--ETDILIATDAIAMG 251
Query: 523 LNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582
LNL I+ ++F + K++G + +++ QIAGRAGR G + G D L Y+
Sbjct: 252 LNLPIKTILFTTHMKFDGISRRGISVNEIVQIAGRAGRYGH-HEKGFIGATTKDSLKYIK 310
Query: 583 ECLKQPFEVVKKVGLFPF-----FEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
E QP + +K PF EQ+ A L + ++L+ F N +G +
Sbjct: 311 EEYSQPIKTIKP----PFKVKINNEQLTSLAMHLKTTSLTKVLKFFSTNMVFEGPFIAAN 366
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI--AM 695
+ + ++++ L LED++ AP++++ + + S+ KN + ++
Sbjct: 367 IGSMISASTIVDQKFNLKLEDKYMLAQAPISVKSKIILQAYDIYISAVLKNRVIRYKPSI 426
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLT 755
+PK A+ +LL +E + + +S+YLWLS++ E+ FP + KA T + + SL
Sbjct: 427 TLPK-VARTQKDLLLVEDEIKKISLYLWLSYKLPEQ-FPDSIKATIARTSFNQFMENSLK 484
Query: 756 N--ANWKPESRQAGKPKLHQQREDGYDRPR 783
PE+++ P RE RPR
Sbjct: 485 KDIKLAPPENKRPFPP-----REKREFRPR 509
>gi|28211047|ref|NP_781991.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium tetani E88]
gi|28203486|gb|AAO35928.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium tetani E88]
Length = 593
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 253/466 (54%), Gaps = 54/466 (11%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR + RK H G TN+GKTYNA+Q+ E+K GIY SPLR+LA+E F+++N
Sbjct: 138 PKDEYEEARKLTRKFYIHLGETNTGKTYNAMQKLKESKHGIYLSPLRILALENFERLNNE 197
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+LLTG+E+ V + H +CT+E + +++YDVA+IDEIQM+ D RG AWTRA LG
Sbjct: 198 GIKCNLLTGEEEIKVENATHTSCTIEKLDINKVYDVAIIDEIQMIDDDERGAAWTRAFLG 257
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L +EIH+CG + D++ +I + DE + Y+R PL +E ++ R+++ GD +
Sbjct: 258 LNCEEIHICGAINSKDIITEIVEDCQDEYEFKEYKRDIPLEMEFESF--SYRDIKEGDAL 315
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++ + ++ M I+ +IYG LPPE R++Q F ++ E +L+ +
Sbjct: 316 VVFSKKRVLQLAKNYADMGIK------SSLIYGDLPPEVRKKQYKQFINK--ESSILITT 367
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR++F + K++G +I + +VKQIAGRAGR+G IY G ++
Sbjct: 368 DAIGMGVNLPIRRIIFMDVKKFDGSEIRYLNSQEVKQIAGRAGRKG-IYEIGYVSSYGNT 426
Query: 575 -------LDDLDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
+D D I+ + P E + K+ P E++ +++ Q EK
Sbjct: 427 QNFIKEMIDIEDRTIDKAVVGPTEAILKIKGLPLREKLAIWSTQ---------KEKIPHY 477
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS 686
++D S +L D I K + E +Q + P ++ + M L +
Sbjct: 478 RKMDISEYLIVLDSI-KFYKLDESIQ-------WQLLKIPFDVGNSDLMRAFLNYMD--- 526
Query: 687 KNAPVSIAMGMPKGSAKND---AELLDLETKHQVLSMYLWLSHQFK 729
I + KG +K L +LET +Q +++Y S K
Sbjct: 527 -----EIFIAKRKGLSKPKYPFKTLYELETYYQKINLYYSSSKALK 567
>gi|170756170|ref|YP_001781019.1| helicase [Clostridium botulinum B1 str. Okra]
gi|429245241|ref|ZP_19208647.1| helicase [Clostridium botulinum CFSAN001628]
gi|169121382|gb|ACA45218.1| helicase domain protein [Clostridium botulinum B1 str. Okra]
gi|428757730|gb|EKX80196.1| helicase [Clostridium botulinum CFSAN001628]
Length = 588
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|387817640|ref|YP_005677985.1| putative ATP-dependent RNA helicase [Clostridium botulinum H04402
065]
gi|322805682|emb|CBZ03247.1| putative ATP-dependent RNA helicase [Clostridium botulinum H04402
065]
Length = 588
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPKLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|153939905|ref|YP_001390728.1| helicase [Clostridium botulinum F str. Langeland]
gi|152935801|gb|ABS41299.1| helicase domain protein [Clostridium botulinum F str. Langeland]
Length = 588
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|349699527|ref|ZP_08901156.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 815
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 168/467 (35%), Positives = 253/467 (54%), Gaps = 19/467 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK++ AL A+ G+ +PLRLLA E + + A GV
Sbjct: 305 FRTARALNRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPT 364
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ VP S H+A TVEM + DVA+IDE QM++D RG AWT A++G A
Sbjct: 365 SLATGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPAR 424
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +VR+I GD + E ER PLV +++ L ++ D ++AFS
Sbjct: 425 HLFILGAPDCIPMVRRIAELCGDPVDEIRLERKSPLVAAERSV--SLHELQKHDALIAFS 482
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ V+YGAL PE RR +A FND D D+L+A+DA+GMGLNL
Sbjct: 483 RREVLDLR-ALLLAQGKRVAVVYGALSPEVRRAEAQRFNDGD--ADILIATDAIGMGLNL 539
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL----NLDDLDYL 581
IRRVVF +L KY+G++ + +VKQI GRAGR G + G+ L + + +
Sbjct: 540 TIRRVVFAALRKYDGNQTRDLNPQEVKQIGGRAGRYGK-HEQGVVAVLEGVGSPSFIHAM 598
Query: 582 IECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRHD 639
+ QP E ++ + P + V+ A ++ + + +L + R D +Y L +
Sbjct: 599 LAAPPQPIEDMRP-QVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANME 657
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK-NAPVSIAMG-M 697
+A LE V L+L R+ + PV+ RD + L+ +A+ ++ NA G +
Sbjct: 658 QAFAIATALEGVADLTLAQRWVYAMCPVDDRD-NGIQRLVHWAADHAAGNAVPPPGTGRL 716
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMAT 744
P EL E +H+ L + WL+ +F E Y + EA AT
Sbjct: 717 PPPERAERTELERAEKRHKRLVAWRWLALRFPEA---YVNREEAEAT 760
>gi|154336527|ref|XP_001564499.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061534|emb|CAM38564.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 686
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 248/473 (52%), Gaps = 63/473 (13%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P W+P AR+M+R+ I+H GPTNSGKT+ AL+ + A+ G+YC+PL+ LA +V+ +V
Sbjct: 129 PWDWYPQARLMRRRFIFHYGPTNSGKTHAALEALVRARSGVYCAPLKALATQVWYRVKE- 187
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
V C LL G E+ + H++CTVEM D DV V+DEIQMM+D RG+AWTRALLG
Sbjct: 188 RVPCDLLIGDERVFDGAAEHVSCTVEMAPVDVQVDVGVVDEIQMMADRDRGWAWTRALLG 247
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDE--LHEQHYERFKPLVVEAKTLLGDLR--NVRS 457
L A EIHLCG+ L +++K+ T + L ++R PL V +L L+ V +
Sbjct: 248 LPAREIHLCGEARALPLIQKLLYATHERKSLLLVEHKRLVPLAV-FPSLCSRLQPETVEN 306
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF------- 510
GDC V FS++E+ +++ + + IYG +P + R +A FN E+
Sbjct: 307 GDCFVCFSKKEVLDLRDKLNRLPGVTSSAIYGVMPFQVREAEAARFNHGVAEYISASSTC 366
Query: 511 ---------------------------------DVLVASDAVGMGLNLNIRRVVFYSLSK 537
VLV++DA+ GLN+NI R+VF +L K
Sbjct: 367 VANARDNAASPTTTSPRSSQSRVSSPEAAMPTKHVLVSTDAIAFGLNMNIERIVFTTLRK 426
Query: 538 YNGDKIIPVPGSQVKQIAGRAGRRGSI--YPDGLTTTLNLDDLDYLIECLKQPFEVVKKV 595
++G+ +I +P + V+QIAGR+GR G + G T L+ D+ + + K
Sbjct: 427 FDGNGMIELPDATVQQIAGRSGRFGLTRQHAVGRCTVLHERDMTKFSAAMSAQLAPLGKA 486
Query: 596 GLFPFFEQVELFAG--------------QLSNYTFCQLLEKFGENCRLDGSYFLCR-HDH 640
GL P + ++LF + +F +L+ +F +C +F C H
Sbjct: 487 GLLPTGDVLQLFVELDAAKARKASKATLDSNGGSFFELMSRFAASCTASEHFFPCDIHRS 546
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI 693
+ ++A +LE V+ LSL DR FC+ P++ ++ ++ +A+ ++ PV++
Sbjct: 547 LLRLAELLEPVRDLSLADRILFCYLPLSDTSAASLQLIVAYATDHAAGKPVTL 599
>gi|226948645|ref|YP_002803736.1| helicase domain-containing protein [Clostridium botulinum A2 str.
Kyoto]
gi|226840809|gb|ACO83475.1| helicase domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 588
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKKVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|258541211|ref|YP_003186644.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041132|ref|YP_005479876.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384049647|ref|YP_005476710.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384052757|ref|YP_005485851.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384055989|ref|YP_005488656.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384058630|ref|YP_005497758.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384061924|ref|YP_005482566.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384118000|ref|YP_005500624.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421849294|ref|ZP_16282276.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|256632289|dbj|BAH98264.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635346|dbj|BAI01315.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638401|dbj|BAI04363.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641455|dbj|BAI07410.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256644510|dbj|BAI10458.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256647565|dbj|BAI13506.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256650618|dbj|BAI16552.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653609|dbj|BAI19536.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|371459932|dbj|GAB27479.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 782
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 171/469 (36%), Positives = 259/469 (55%), Gaps = 29/469 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK+Y AL +A+ G+ +PLRLLA E + + + GV
Sbjct: 303 FRTARALNRQITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 362
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +VP S H+A TVEM DVAVIDE QM+ D RG AWT A++G A
Sbjct: 363 SLSTGEERIVVPGSKHLAATVEMCPFYSPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 422
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+++ G P + +VR+I GD L E ER PL + + L ++ SGD ++AFS
Sbjct: 423 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAASHPV--RLADLGSGDALIAFS 480
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ +H V+YGAL PE RR +A FN D E D+LVA+DA+GMGLNL
Sbjct: 481 RREVLDLRAALLQH-GKRVAVVYGALSPEVRRAEAQRFN--DGEADILVATDAIGMGLNL 537
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+I+RVVF +L KY+G + + +VKQI GRAGR G + G+ L I
Sbjct: 538 SIKRVVFAALKKYDGRQTRDLTVQEVKQIGGRAGRFGK-HETGIVAVLAGAGSPTFIRRQ 596
Query: 586 -----KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRH 638
+QP ++ V P + V+ A ++ + + +L + + D +Y L
Sbjct: 597 LEADPEQPDDLRPYVQ--PDADIVKAVAAEIGSQSLYGVLSRIHRAVLRKDDPNYRLSDM 654
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMP 698
+ +A+ LE V+GL L R+++ PV+ RD + L+ +A+ ++ V +P
Sbjct: 655 EQAFAIASALEGVEGLDLTTRWSYAMCPVDDRD-NGIRRLVGWAADHAAGRRV-----LP 708
Query: 699 KGSAKNDA-------ELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
G+ + A EL E +H+ L + WL+ +F E++P ++AE
Sbjct: 709 PGTGRLPASERAGREELERAEKRHKRLVAWRWLALRFP-EIYPDREEAE 756
>gi|168180037|ref|ZP_02614701.1| helicase domain protein [Clostridium botulinum NCTC 2916]
gi|182668949|gb|EDT80925.1| helicase domain protein [Clostridium botulinum NCTC 2916]
Length = 588
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|148379343|ref|YP_001253884.1| helicase domain-containing protein [Clostridium botulinum A str.
ATCC 3502]
gi|153931568|ref|YP_001383718.1| helicase [Clostridium botulinum A str. ATCC 19397]
gi|153937286|ref|YP_001387266.1| helicase [Clostridium botulinum A str. Hall]
gi|148288827|emb|CAL82911.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
gi|152927612|gb|ABS33112.1| helicase domain protein [Clostridium botulinum A str. ATCC 19397]
gi|152933200|gb|ABS38699.1| helicase domain protein [Clostridium botulinum A str. Hall]
Length = 588
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVRSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|421853095|ref|ZP_16285775.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|371478672|dbj|GAB30978.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 782
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 171/469 (36%), Positives = 259/469 (55%), Gaps = 29/469 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK+Y AL +A+ G+ +PLRLLA E + + + GV
Sbjct: 303 FRTARALNRQITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 362
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +VP S H+A TVEM DVAVIDE QM+ D RG AWT A++G A
Sbjct: 363 SLSTGEERIVVPGSKHLAATVEMCPFYSPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 422
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+++ G P + +VR+I GD L E ER PL + + L ++ SGD ++AFS
Sbjct: 423 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAASHPV--RLADLGSGDALIAFS 480
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ +H V+YGAL PE RR +A FN D E D+LVA+DA+GMGLNL
Sbjct: 481 RREVLDLRAALLQH-GKRVAVVYGALSPEVRRAEAQRFN--DGEADILVATDAIGMGLNL 537
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+I+RVVF +L KY+G + + +VKQI GRAGR G + G+ L I
Sbjct: 538 SIKRVVFAALKKYDGRQTRDLTVQEVKQIGGRAGRFGK-HETGVVAVLAGAGSPTFIRRQ 596
Query: 586 -----KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRH 638
+QP ++ V P + V+ A ++ + + +L + + D +Y L
Sbjct: 597 LEADPEQPDDLRPYVQ--PDADIVKAVAAEIGSQSLYGVLSRIHRAVLRKDDPNYRLSDM 654
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMP 698
+ +A+ LE V+GL L R+++ PV+ RD + L+ +A+ ++ V +P
Sbjct: 655 EQAFAIASALEGVEGLDLTTRWSYAMCPVDDRD-NGIRRLVGWAADHAAGRRV-----LP 708
Query: 699 KGSAKNDA-------ELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
G+ + A EL E +H+ L + WL+ +F E++P ++AE
Sbjct: 709 PGTGRLPASERAGREELERAEKRHKRLVAWRWLALRFP-EIYPDREEAE 756
>gi|330993313|ref|ZP_08317248.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
gi|329759343|gb|EGG75852.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
Length = 817
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 165/467 (35%), Positives = 250/467 (53%), Gaps = 19/467 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK++ AL A+ G+ +PLRLLA E + + A GV
Sbjct: 305 FRTARALKRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPT 364
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ VP S H+A TVEM + DVA+IDE QM++D RG AWT A++G A
Sbjct: 365 SLATGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPAR 424
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +VR+I GD + E ER PLV + + L ++ D ++AFS
Sbjct: 425 HLFILGAPDCIPMVRRIAELCGDPIDEIRLERKSPLVAAERAV--SLHELQKHDALIAFS 482
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ + H V+YGAL PE RR +A FN+ D D+L+A+DA+GMGLNL
Sbjct: 483 RREVLDLRALLLAH-GKRVAVVYGALSPEVRRAEAQRFNNGD--ADILIATDAIGMGLNL 539
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL----NLDDLDYL 581
IRRVVF +L KY+G++ + +VKQI GRAGR G + G+ L + + +
Sbjct: 540 TIRRVVFAALRKYDGNQTRDLNPQEVKQIGGRAGRFGK-HEQGVVAVLEGVGSPSFIHAM 598
Query: 582 IECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRHD 639
+ QP E ++ + P + V+ A ++ + + +L + R D +Y L +
Sbjct: 599 LAAPPQPIEDMRP-QVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANME 657
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS--KNAPVSIAMGM 697
+A LE V L+L R+ + PV+ RD + L+ +A+ ++ P +
Sbjct: 658 QAFAIATALEGVPDLTLAQRWVYAMCPVDDRD-NGIQRLVHWAADHAAGNTVPPPGTGRL 716
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMAT 744
P EL E +H+ L + WL+ +F E Y + EA T
Sbjct: 717 PAAERAERTELERAEKRHKRLVAWRWLALRFPET---YVNREEAEGT 760
>gi|349688090|ref|ZP_08899232.1| RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 815
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 168/467 (35%), Positives = 253/467 (54%), Gaps = 19/467 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK++ AL A+ G+ +PLRLLA E + + A GV
Sbjct: 305 FRTARALNRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPT 364
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ VP S H+A TVEM + DVA+IDE QM++D RG AWT A++G A
Sbjct: 365 SLATGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPAR 424
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +VR+I GD + E ER PLV +++ L ++ D ++AFS
Sbjct: 425 HLFILGAPDCIPMVRRIAELCGDPVDEIRLERKSPLVAAERSV--SLHELQKHDALIAFS 482
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ V+YGAL PE RR +A FND D D+L+A+DA+GMGLNL
Sbjct: 483 RREVLDLR-ALLLAQGKRVAVVYGALSPEVRRAEAQRFNDGD--ADILIATDAIGMGLNL 539
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL----NLDDLDYL 581
IRRVVF +L KY+G++ + +VKQI GRAGR G + G+ L + + +
Sbjct: 540 TIRRVVFAALRKYDGNQTRDLNPQEVKQIGGRAGRYGK-HEQGVVAVLEGVGSPSFIHAM 598
Query: 582 IECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRHD 639
+ QP E ++ + P + V+ A ++ + + +L + R D +Y L +
Sbjct: 599 LAAPPQPIEDMRP-QVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANME 657
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK-NAPVSIAMG-M 697
+A LE V L+L R+ + PV+ RD + L+ +A+ ++ NA G +
Sbjct: 658 QAFAIATALEGVADLTLAQRWVYAMCPVDDRD-NGIQRLVHWAADHAAGNAVPPPGTGRL 716
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMAT 744
P EL E +H+ L + WL+ +F E Y + EA AT
Sbjct: 717 PPPERAERTELERAEKRHKRLVAWRWLALRFPEA---YINREEAEAT 760
>gi|170760794|ref|YP_001786756.1| helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407783|gb|ACA56194.1| helicase domain protein [Clostridium botulinum A3 str. Loch Maree]
Length = 588
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 252/464 (54%), Gaps = 52/464 (11%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFRNIPLKIEEEAF--RLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-LTTTLNL 575
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G L + N
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 576 DDL---------DYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
+ + E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVNE 519
Query: 685 YSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
SI+ P+ S+K +L DLE +Q L++Y LS F
Sbjct: 520 IFIGNFKSIS--KPRLSSK---DLYDLELYYQKLNLYYSLSKNF 558
>gi|168184312|ref|ZP_02618976.1| helicase domain protein [Clostridium botulinum Bf]
gi|182672597|gb|EDT84558.1| helicase domain protein [Clostridium botulinum Bf]
Length = 588
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+K+GIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKRGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAMLA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELITNIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLNSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + + P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEALLDIKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TRKEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKSRLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|237794720|ref|YP_002862272.1| helicase domain-containing protein [Clostridium botulinum Ba4 str.
657]
gi|229261095|gb|ACQ52128.1| helicase domain protein [Clostridium botulinum Ba4 str. 657]
Length = 588
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 251/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN+++R E+K+GIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESKRGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C+L+TG+E+ + H+ CT+E + +E YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAIIDEIQMIDDDQRGSAWTRAMLA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG + +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LRCKEIHVCGALNTKELITNIIEDCGDEYELKEYFRNIPLKIEEEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F D ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFMSGDT--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR+VF + K++G+ + + ++KQI GRAGR G IY G +
Sbjct: 360 DAIGMGVNLPIRRIVFMDIRKFDGNDMRYLNSQEIKQIGGRAGRLG-IYDIGYLASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + + P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEALLDIKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TRKEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKSISKPRLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|393769812|ref|ZP_10358330.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
gi|392724769|gb|EIZ82116.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
Length = 713
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 233/449 (51%), Gaps = 16/449 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I++H GPTNSGKTY ALQ A G Y +PLRLLA+E ++ + G+
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALQMLTAAANGTYLAPLRLLALENYETLRERGLRA 295
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
++TG+E P H A T+E DVAVIDEIQM+SD RG+AWT AL G+ A
Sbjct: 296 GMVTGEEVLGEPEPTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAR 355
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ +CG L VR+ G+ L + R PL++ + L V GD VVAFS
Sbjct: 356 TVVVCGSDDALSYVRRAAEAAGESLEVIPFTRKSPLLLLDAPV--PLEKVEPGDAVVAFS 413
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RR + E + I H IYGAL PE RR +A F + E +VLV +DA+GMGLNL
Sbjct: 414 RRAVHENR-EILVARGHRVATIYGALSPEVRRAEATRF--RTGEANVLVTTDAIGMGLNL 470
Query: 526 N-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG--SIYPDGLTTTLNLDDLDYLI 582
+RR+VF ++ K++G K + S+++QIAGRAGR G + T + ++ + +
Sbjct: 471 GPLRRIVFSTVRKWDGTKERGLTNSEIRQIAGRAGRYGHQDVGYVAATDAIAIEPIRIAL 530
Query: 583 ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH-DHI 641
+ + P + A ++ + ++L F GS F + I
Sbjct: 531 SGAPTAPAADSRFFVRPDLGAIRSVAEEMQTQSLHEVLTHFARATFYAGSPFQPSALEEI 590
Query: 642 KKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGS 701
+VA ++++ + L +E++F F P+N RD AM L R++ + + V P
Sbjct: 591 LEVARVIDRAR-LPIEEKFAFSVCPINRRDEIAMGMLERWSQARAARTTV------PALR 643
Query: 702 AKNDAELLDLETKHQVLSMYLWLSHQFKE 730
A EL E ++ S YLWLS +F +
Sbjct: 644 ASLTGELDYQERTVRLASAYLWLSRRFPD 672
>gi|56478273|ref|YP_159862.1| hypothetical protein ebA4984 [Aromatoleum aromaticum EbN1]
gi|56314316|emb|CAI08961.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 703
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 172/528 (32%), Positives = 263/528 (49%), Gaps = 35/528 (6%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ LT+ F A +M+R+ + GPTNSGKT+ A++ +A G+Y +PLRLLA+E +
Sbjct: 193 TVQLTRYPESFETAFMMRRRFVAILGPTNSGKTHQAMEALAQAATGVYLAPLRLLALENY 252
Query: 336 DKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+++ GV SL+TG+E++L P + H+A T+EM+ T +VAVIDEIQM+ D RG AW
Sbjct: 253 ERLADRGVAVSLVTGEERRLTPGATHVASTIEMLDTSRAVEVAVIDEIQMLEDLERGSAW 312
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T A+ G A ++L G S V + G EL R PL + A +G + +
Sbjct: 313 TAAVCGAAAKTVYLLGALSARPAVEALAERLGCELEVTTLARKSPLEM-APRAVGSIGQL 371
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
R GD V+AFSRR++ I IYG L PE RR QA F +D E D++VA
Sbjct: 372 RRGDAVIAFSRRDVLNWATNIAA-AGFRVATIYGNLSPEVRRAQAQRF--RDGEADIVVA 428
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNG---DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
+DA+GMGLNL + RVVF + K++G D + P QIAGRAGR G ++ GL
Sbjct: 429 TDAIGMGLNLPVARVVFSTAKKFDGISEDILAPW---LTHQIAGRAGRFG-LHEAGLVAG 484
Query: 573 LNLDDLDYLIECLKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630
+ + ++ P + + G + P V+ A +T +LLE F N L
Sbjct: 485 FDDHTHRIISRLMRTPADPLSNRGFYVTPSLRHVKSIAAATGEHTLARLLELFSRNIDLT 544
Query: 631 GSYFLCRHDHIKKVANMLEKVQ-----GLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
+FL ++ E+ Q LSLE RF PV+ R +A +
Sbjct: 545 DDFFLP-----GDLSEQTERAQWLDSLPLSLEHRFTLSLVPVSTRVETLNQAWQGWARAL 599
Query: 686 SKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATD 745
+K +++ P G + L E + S Y WL ++ + +P A+ A A+A
Sbjct: 600 AKERSSHLSI-EPVGDMRY--ALQAAEDACKKYSAYAWLGYRLP-DYYPDAEAAVALARS 655
Query: 746 IAELLGQSLTNANWKPESRQAGKPKLHQQREDGYDRPRSIIKSYENRK 793
++E + + L +RQ G+ + ++ R R + S +R+
Sbjct: 656 MSETVDEML--------ARQHGRRRDEKRTPTPARRVRRGLASRGDRR 695
>gi|15894065|ref|NP_347414.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337735994|ref|YP_004635441.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384457503|ref|YP_005669923.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15023664|gb|AAK78754.1|AE007593_2 ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325508192|gb|ADZ19828.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336290300|gb|AEI31434.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 585
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 165/461 (35%), Positives = 252/461 (54%), Gaps = 46/461 (9%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYNA++R A++G+Y SPLR+LA+E F+K+N
Sbjct: 130 PKNEYIETRRMHRKFYIHLGDTNTGKTYNAVERLKTARRGVYLSPLRILALENFEKLNNE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
G+ C LLTG+E+ L P S HI+CT+E V E YD+AVIDEIQM+SD RG AW++ALLG
Sbjct: 190 GIICDLLTGEEEILKPDSTHISCTIEKVDLKEHYDIAVIDEIQMISDYQRGIAWSKALLG 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L DEIH+CG + ++ I + DE + Y+R PL VE ++ + ++++ GD V
Sbjct: 250 LKCDEIHICGAINARYILETIIKDCEDEYEIKEYKRAIPLEVEDESF--NYKDIKEGDAV 307
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
V FS++ + E+ + +IYG LPPE R+ Q F ++ + VLV +DA+GM
Sbjct: 308 VVFSKKRVLEIAQSYSAR-GIKASIIYGDLPPEVRKLQYEQFIKKETK--VLVTTDAIGM 364
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581
G+NL IRR++F ++ K++G++I + +VKQI+GRAGR G IY G + D D++
Sbjct: 365 GVNLPIRRIIFINIRKFDGEQIRELTSQEVKQISGRAGRIG-IYDVGYVASAG-DTQDFI 422
Query: 582 IECLKQ-----------PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630
E L++ P E + ++ P E++ L++ + EK ++D
Sbjct: 423 KEKLEEEDKSIRRAVIGPSEAILRIKGLPLSEKLALWSTR---------QEKLDYYTKMD 473
Query: 631 GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP 690
S ++ D IKK LS E +++ P ++ + M + N
Sbjct: 474 ISEYMMILDRIKKYK--------LSEEVQWDLLKVPFDVSKEELMSTFSGYVVEIFINKQ 525
Query: 691 VSIAMGMP---KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
SI P +GS L +LE +Q ++MY S F
Sbjct: 526 DSIF--KPECFRGS------LDELEIYYQKINMYYSFSKIF 558
>gi|315925470|ref|ZP_07921681.1| ATP-dependent RNA helicase SUV3 [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621371|gb|EFV01341.1| ATP-dependent RNA helicase SUV3 [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 712
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 185/280 (66%), Gaps = 10/280 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR + R I+H GPTNSGKT++A+ A +G+Y +PLRLLAME+ +++NA GV C
Sbjct: 223 FPLARELNRHFIFHVGPTNSGKTHDAIVACESALRGVYLAPLRLLAMEIAERMNADGVAC 282
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
S++TG+E+ +P +NH+A T+EM+S +++YDVAVIDE Q+++D RG+AWT+A+LG+ A
Sbjct: 283 SMVTGEEENRIPGANHMASTIEMMSEEQVYDVAVIDECQLIADRERGWAWTQAVLGIAAA 342
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL---RNVRSGDCVV 462
+H C P L ++R + +E GD +ER PL +E GD+ +VR GD +V
Sbjct: 343 TVHACMAPEALPLMRALVTECGDSFEVVPHERATPLAMEP----GDVAFPEDVRPGDALV 398
Query: 463 AFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522
FSRR + + +E VIYGALP RR + + F E D++VA+DA+GMG
Sbjct: 399 VFSRRSVLQAASMLED-AGRRVSVIYGALPYAARRAETHKF--LSGETDMVVATDAIGMG 455
Query: 523 LNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
+NL ++R+VF K++G + + +VKQIAGRAGRRG
Sbjct: 456 MNLPVKRIVFLETRKFDGVEKRELTIPEVKQIAGRAGRRG 495
>gi|350270438|ref|YP_004881746.1| putative helicase [Oscillibacter valericigenes Sjm18-20]
gi|348595280|dbj|BAK99240.1| putative helicase [Oscillibacter valericigenes Sjm18-20]
Length = 600
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/339 (42%), Positives = 201/339 (59%), Gaps = 16/339 (4%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P +P AR KR H G TN+GKTY AL R +++ GIY +PLR+LA+E ++++NA
Sbjct: 131 PQDEYPEARRQKRMFYLHLGDTNTGKTYQALLRLRQSRSGIYLAPLRILALENYERLNAE 190
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV CSLLTG+E+ VP S H+ CTVE YDVAVIDE+Q+++D+ RG AWTRA+LG
Sbjct: 191 GVPCSLLTGEEEARVPGSKHLCCTVEKADLGGKYDVAVIDEVQLLADSQRGDAWTRAILG 250
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIHLCG V + + + + GDE + Y R PL +E + L +V GD +
Sbjct: 251 LPCPEIHLCGALLVKEQLTTMIRDCGDEYEFKAYTRLVPLQMEYTPV--HLNHVGKGDAL 308
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
VAFS+ + + + + VIYG LPPE RR Q + F N VLVA+DA+GM
Sbjct: 309 VAFSKGAVLALSRYLSQ-LGIRSSVIYGDLPPEVRRGQYDAFIRGKN--PVLVATDAIGM 365
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN------- 574
G+NL IRR++F L K++G+ P+ ++KQIAGRAGR G IY G L+
Sbjct: 366 GVNLPIRRLIFTELEKFDGESRRPLTSQEIKQIAGRAGRIG-IYEVGYVACLDERIPLVE 424
Query: 575 --LDDLDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQ 610
L D IE + P E + ++ L P E++ L++ +
Sbjct: 425 EKLSAEDEPIEQAVVGPSESILQITLLPLREKLALWSTE 463
>gi|329114819|ref|ZP_08243576.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
gi|326695950|gb|EGE47634.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
Length = 782
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 258/469 (55%), Gaps = 29/469 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK+Y AL +A+ G+ +PLRLLA E + + + GV
Sbjct: 303 FRTARALNRQITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 362
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +VP S H+A TVEM DVAVIDE QM+ D RG AWT A++G A
Sbjct: 363 SLSTGEERIVVPGSKHLAATVEMCPFYSPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 422
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+++ G P + +VR+I GD L E ER PL + + L ++ +GD ++AFS
Sbjct: 423 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAASHPV--RLADLGAGDALIAFS 480
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ +H V+YGAL PE RR +A FND E D+LVA+DA+GMGLNL
Sbjct: 481 RREVLDLRAALLQH-GKRVAVVYGALSPEVRRAEAQRFND--GEADILVATDAIGMGLNL 537
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+I+RVVF +L KY+G + + +VKQI GRAGR G + G+ L I
Sbjct: 538 SIKRVVFAALKKYDGRQTRDLTVQEVKQIGGRAGRFGK-HETGVVAVLAGAGSPTFIRRQ 596
Query: 586 -----KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRH 638
+QP ++ V P + V+ A ++ + + +L + + D +Y L
Sbjct: 597 LEADPEQPDDLRPYVQ--PDADIVKAVATEIGSQSLYGVLSRIHRAVLRKDDPNYRLSDM 654
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMP 698
+ +A+ LE V+GL L R+++ PV+ RD + L+ +A+ ++ V +P
Sbjct: 655 EQAFAIASALEGVEGLDLTTRWSYAMCPVDDRD-NGIRRLVGWAADHAAGRRV-----LP 708
Query: 699 KGSAK-------NDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
G+ + EL E +H+ L + WL+ +F E++P ++AE
Sbjct: 709 PGTGRLPPSERAGREELERAEKRHKRLVAWRWLALRFP-EIYPDREEAE 756
>gi|253996211|ref|YP_003048275.1| helicase domain-containing protein [Methylotenera mobilis JLW8]
gi|253982890|gb|ACT47748.1| helicase domain protein [Methylotenera mobilis JLW8]
Length = 512
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 170/499 (34%), Positives = 269/499 (53%), Gaps = 32/499 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR ++ GPTNSGKTY AL +AK G+Y +PLRLLAME+ D++ A GV C
Sbjct: 17 FHLARKLKRHHRFYLGPTNSGKTYQALLALEQAKSGVYLAPLRLLAMEIRDRLVAAGVPC 76
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L+TG+E+ ++ + H A T+EM++ + +VAVIDEIQM+ D RG AWT AL+G+ A
Sbjct: 77 NLITGEERVMMEHAQHTASTIEMMNAHKEVEVAVIDEIQMLQDPDRGSAWTAALVGVPAA 136
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQH----YERFKPLVVEAKTLLGDLRN------- 454
+ +CG + V C T L+E + R PLV+E +L G +
Sbjct: 137 TVFICGSTA----VTAPCIATIKTLNESYDITQLVRKTPLVLEQDSLCGKHYSRQKLKPK 192
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
++ GD ++AFSR+++ A + IYGAL PE RR ++ FN + D+LV
Sbjct: 193 LQKGDAIIAFSRKDVLTFA-ARFRQWGFSVASIYGALSPEVRRTESERFN--TGQADILV 249
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
A+DA+GMGLNL IRR++F ++ K++G + ++V+QIAGRAGR G IY G + L
Sbjct: 250 ATDAIGMGLNLPIRRIIFANIHKFDGVASRLLNMTEVRQIAGRAGRFG-IYATGYVSVLE 308
Query: 575 LDDLDYLIECLKQPFEV-VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSY 633
D+L ++ L + K+ + +QV A Q+ ++L E R + +
Sbjct: 309 NDELLHIEHMLSADDTADLSKLPVNINLQQVSNIAHQMHTNKIAEVLSYHQERTRFNHAI 368
Query: 634 F--LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP-KAMYHLL---RFASSYSK 687
F I + + +SL+D++ F FAP+++ + Y+LL A S +
Sbjct: 369 FEQASLTTQITQALIVDAYAPKMSLKDKYIFVFAPISLNVAFEKDYYLLCLKSVAESTIR 428
Query: 688 NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIA 747
+ P + + A+N L + E LS+Y WLS +F + F ++ A+ T ++
Sbjct: 429 HLPAAPSW----LEAQNPKHLEEAEMLSHNLSLYAWLSFKFPQH-FVDGQQVSALRTQVS 483
Query: 748 ELLGQS-LTNANWKPESRQ 765
+ ++ LT A + SR+
Sbjct: 484 RYIERALLTQAGYGDTSRE 502
>gi|339017941|ref|ZP_08644086.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752944|dbj|GAA07390.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 786
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 163/466 (34%), Positives = 254/466 (54%), Gaps = 23/466 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK+Y AL +A+ G+ +PLRLLA E + + + GV
Sbjct: 302 FRTARALNRRITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 361
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +VP S H+A TVEM DVAVIDE QM+ D RG AWT A++G A
Sbjct: 362 SLATGEERIIVPESRHLAATVEMCPFYNPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 421
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+++ G P + +VR+I GD L E ER PL A+ + L ++ +GD ++AFS
Sbjct: 422 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAAAQPV--KLTDLTTGDALIAFS 479
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ +H V+YGAL PE RR +A FN D+L+A+DA+GMGLNL
Sbjct: 480 RREVLDLRAALMQH-GRRVAVVYGALSPEVRRAEAQRFN--SGAADILIATDAIGMGLNL 536
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+I+RVVF +L K++G + + +VKQI GRAGR G + ++ L
Sbjct: 537 SIKRVVFAALKKFDGKQTRDLTVQEVKQIGGRAGRYGKHEVGTVAVLAGAGSPSFIRRQL 596
Query: 586 KQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRHDHI 641
+ E+ + + F P + V A ++ + + +L + + D +Y L +
Sbjct: 597 EADAELPEDLRPFVQPDADIVRAVATEIGSESLYGVLSRIHRAVLRKDDPNYRLADMEQA 656
Query: 642 KKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGS 701
+A+ LE V GL L R+++ PV+ RD + L+ +A+ ++ V +P G+
Sbjct: 657 FAIASALEGVDGLDLTTRWSYAMCPVDDRD-NGIRRLVGWAADHAAGRRV-----LPPGT 710
Query: 702 AK-------NDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
+ + EL E +H+ L + WL+ +F E +P ++AE
Sbjct: 711 GRLPPSERASREELERAEKRHKRLVAWRWLALRFP-EFYPDREEAE 755
>gi|182418042|ref|ZP_02949347.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum 5521]
gi|237665685|ref|ZP_04525673.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182378097|gb|EDT75633.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum 5521]
gi|237658632|gb|EEP56184.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 908
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 124/301 (41%), Positives = 195/301 (64%), Gaps = 5/301 (1%)
Query: 268 KRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPL 327
K+ + ++ L P + +R+M+R + H G TN+GKTY+++ R MEA+ G+Y +PL
Sbjct: 379 KKAKDELQDIILDNPINEYEESRLMERHFVLHVGETNTGKTYSSILRLMEAESGVYLAPL 438
Query: 328 RLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMS 387
RLLA+E+ DK+N+ V CSLLTG+E+ ++P+ H++ T+E + T YDV VIDE QM++
Sbjct: 439 RLLALEIQDKLNSENVSCSLLTGEEEDIIPYGTHVSSTIEKLQTGTFYDVCVIDEAQMIN 498
Query: 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
D RG+AWTRA+ ++ EIH+C P L+V+ K+ + GD +++R L+ E KT
Sbjct: 499 DNQRGWAWTRAITAALSPEIHICMAPEALNVIIKLIEDCGDTYEVINHKRDTELIFEDKT 558
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
D ++V++GD +V F +R+ V + + N +IYG+LP TR++Q F +
Sbjct: 559 FNLD-KDVKAGDALVVFGKRKALAVSAEL-LNKNIKTSIIYGSLPYSTRKKQFERF--LN 614
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD 567
E +V+V +DA+GMG+NL I+R+VF KY+G + + S++KQIAGRAGR+G IY
Sbjct: 615 GETEVIVCTDAIGMGVNLPIKRIVFLETRKYDGVSLRRLKTSEIKQIAGRAGRKG-IYNK 673
Query: 568 G 568
G
Sbjct: 674 G 674
>gi|89097581|ref|ZP_01170470.1| probable ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89087877|gb|EAR66989.1| probable ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 860
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 231/402 (57%), Gaps = 20/402 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK 354
K + H G TN+GKT++AL+ +A GIY +PLRLLA+EV+DK+N + C+L TG+E+K
Sbjct: 374 KYVLHIGDTNTGKTFHALESMKKADSGIYLAPLRLLALEVYDKLNGEAIPCTLKTGEEEK 433
Query: 355 LVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
+ P ++H A TVEM S E +D+AVIDE QM++D RG++W +A+ A E+H+ G S
Sbjct: 434 VTPGASHFASTVEMFSEKERFDIAVIDEAQMITDKDRGFSWYKAITKANASEVHIIGSKS 493
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
++ ++ T E+HE H R PL+VE L++ R GD ++ FSR+ + E
Sbjct: 494 SQSILLQLLEGTDLEIHEYH--RDTPLIVEPDEF--RLKHSRKGDALICFSRKRVLETAS 549
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
++ + +IYG++PPETR++Q F D E +++V++DA+GMGLNL IRRVVF
Sbjct: 550 RLQ-NDGRSVSMIYGSMPPETRKKQVQRFI--DGETNIIVSTDAIGMGLNLPIRRVVFLE 606
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIECLKQP---FE 590
K++G + +VKQIAGRAGR+G +Y G + N+ ++ L+E P F
Sbjct: 607 NEKFDGVSRRQLTSQEVKQIAGRAGRKG-LYNTGRVAFMENIKEMGSLLEQEDDPVHTFS 665
Query: 591 VVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650
+ G+F F++ G TF +L +KF E+ L + ++ E
Sbjct: 666 IAPTSGVFDRFQKYYHDLG-----TFFELWDKF-ESPPGTVKASLAEEKELYELVQGTEM 719
Query: 651 VQGLSLEDRFNFCFAPVNIRDPKAM--YHLLRFASSYSKNAP 690
LSL D + F P + R+P+ + + + AS ++++ P
Sbjct: 720 EARLSLGDLYGFLHLPFSAREPELVRQWRMSVMASVHNEDLP 761
>gi|358635252|dbj|BAL22549.1| hypothetical protein AZKH_0203 [Azoarcus sp. KH32C]
Length = 685
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 174/513 (33%), Positives = 262/513 (51%), Gaps = 35/513 (6%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
LT+ F A +M+R+ I GPTNSGKT+ A++ +A+ G+Y +PLRLLA+E ++++
Sbjct: 175 LTRYPESFETAFMMRRRFIAILGPTNSGKTHAAMEALAKAESGVYLAPLRLLALENYERL 234
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
GV SL+TG+E++L P + H+A T+EM++T +VAVIDEIQM+ D RG AWT A
Sbjct: 235 LDRGVAVSLITGEERRLTPGATHVASTIEMLNTARPVEVAVIDEIQMLEDLERGSAWTAA 294
Query: 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG 458
+ G A + L G S + + G EL + ER PL + + +G + ++ G
Sbjct: 295 VCGAAAKTVFLLGALSARPAIEALAERLGCELEVRTLERKSPLEMAPRE-VGSIGQLKRG 353
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
D V+AFSRR++ I + IYG L PE RR QA F +D E D++VA+DA
Sbjct: 354 DAVIAFSRRDVLNWATNIAE-AGFRVATIYGNLSPEVRRAQAQRF--RDGEADIVVATDA 410
Query: 519 VGMGLNLNIRRVVFYSLSKYNG---DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575
+GMGLNL + RVVF + K++G D + P QIAGRAGR G I+ GL +
Sbjct: 411 IGMGLNLPVARVVFSTAKKFDGISEDILAPW---LTHQIAGRAGRFG-IHDAGLVAGFDE 466
Query: 576 DDLDYLIECLKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSY 633
+ +K P + + G + P V+ + +LLE F N L +
Sbjct: 467 HTHRIIGRLMKTPADPLSNRGFYVTPSLHHVKSISAATGERGLARLLELFSRNIDLTDDF 526
Query: 634 FLCRHDHIKKV--ANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPV 691
FL D +++ A L+ + LSLE RF PV+ R +A + SK
Sbjct: 527 FLP-GDLTEQIERARWLDTLP-LSLEHRFTLSLVPVSTRVESLNQAWQTWARALSKEKSS 584
Query: 692 SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLG 751
+A+ P G + L E + S Y WL ++ + +P A+ A ++A ++E +
Sbjct: 585 HLAI-EPIGEGRY--ALQAAEDACKKYSAYAWLGYRLP-DYYPDAEAAVSLARSMSETVD 640
Query: 752 QSLTNANWKPESRQAGKPKLHQQREDGYDRPRS 784
+ L +RQ H +R D RP S
Sbjct: 641 EML--------ARQ------HGRRRDAKRRPGS 659
>gi|347761752|ref|YP_004869313.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580722|dbj|BAK84943.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 835
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 171/499 (34%), Positives = 263/499 (52%), Gaps = 31/499 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK++ AL A+ G+ +PLRLLA E + + A GV
Sbjct: 323 FRTARALNRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPT 382
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ VP S H+A TVEM + DVA+IDE QM++D RG AWT A++G A
Sbjct: 383 SLATGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPAR 442
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +V++I GD + E ER PLV +++ L ++ D ++AFS
Sbjct: 443 HLFILGAPDCIPMVKRIAELCGDPVDEIRLERKSPLVAAERSV--SLHELQKHDALIAFS 500
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ V+YGAL PE RR +A FN+ D D+L+A+DA+GMGLNL
Sbjct: 501 RREVLDLR-ALLLAQGKRVAVVYGALSPEVRRAEAQRFNNGD--ADILIATDAIGMGLNL 557
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL----NLDDLDYL 581
IRRVVF +L KY+G++ + +VKQI GRAGR G + G+ L + + +
Sbjct: 558 TIRRVVFAALRKYDGNQTRDLNPQEVKQIGGRAGRYGK-HEQGVVAVLEGVGSPSFIHAM 616
Query: 582 IECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRHD 639
+ QP E ++ + P + V+ A ++ + + +L + R D +Y L +
Sbjct: 617 LAAPPQPIEDMRP-QVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANME 675
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN--APVSIAMGM 697
+A LE V L+L R+ + PV+ RD + L+ +A+ ++ P +
Sbjct: 676 QAFAIATALEGVADLTLAQRWVYAMCPVDDRD-NGIQRLVHWAADHAAGNAVPPPGTGSL 734
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATD------IAELLG 751
P EL E +H+ L + WL+ +F E Y + +A AT I ++L
Sbjct: 735 PPAERAERTELERAEKRHKRLVAWRWLALRFPEA---YVNREDAEATTARLNDWIEDVLR 791
Query: 752 QSLTNAN------WKPESR 764
Q T A + P+SR
Sbjct: 792 QQSTRARAPGAFPFSPDSR 810
>gi|392900738|ref|NP_001255542.1| Protein C08F8.2, isoform c [Caenorhabditis elegans]
gi|320202869|emb|CBZ01775.1| Protein C08F8.2, isoform c [Caenorhabditis elegans]
Length = 438
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 208/351 (59%), Gaps = 12/351 (3%)
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
M+ D RG+AWTRALLG ADEIHLCG+P+ +D+V+K+ G+ + ++YER PL +
Sbjct: 1 MLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIA 60
Query: 445 AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504
K + N+ GDC+V FS+R IF +E++ VIYG LPP T+ QA FN
Sbjct: 61 DKA-IESYSNIEPGDCIVCFSKRSIFFNSKKLEEN-GIKPAVIYGDLPPGTKLAQAAKFN 118
Query: 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564
D D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +++P + QIAGRAGR G+
Sbjct: 119 DPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--ELLPTYAAL--QIAGRAGRFGTA 174
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFG 624
Y +G+ TT+ +DL L L + E + VG+ P ++Q+E F+ L +F +LL+ F
Sbjct: 175 YANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFV 234
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
C + +F+C ++++A +++++ L L+ R+ FC +P+N D + ++ A
Sbjct: 235 SVCSVSDHFFICTVYDMRELAVLIDQIP-LPLKVRYTFCTSPLNTEDKRTSAVFVKMARR 293
Query: 685 YSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+S ++ + P A EL LE +++L Y+WLS +F +
Sbjct: 294 FSTGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEILDQYMWLSMRFPD 344
>gi|167519643|ref|XP_001744161.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777247|gb|EDQ90864.1| predicted protein [Monosiga brevicollis MX1]
Length = 304
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 129/287 (44%), Positives = 185/287 (64%), Gaps = 1/287 (0%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
PH +P AR +R+II H GPTNSGKTY A+Q AK ++C+PLRLLA E ++++
Sbjct: 1 PHLTYPEARKCRRRIIIHRGPTNSGKTYGAMQAAAAAKTAMFCAPLRLLAWEQYERLRNG 60
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
LLTGQE + H+ACTVEM YDVAVIDE Q + A RG+AWT A+LG
Sbjct: 61 HQRAELLTGQEMYTCADATHLACTVEMTDFSRHYDVAVIDECQNIGSAERGWAWTNAILG 120
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
AD ++L D S +++ I GD++ ++R PL V+ + L+ + ++R GDC+
Sbjct: 121 ARADVLYLIEDGSATQLLQNIAKVCGDDVEVIDHQRLAPLHVQREPLI-NFSHLREGDCL 179
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
+ F+RRE+F +K E T C V+YGALPP+ R+ QA LFND +++ +L ASDA+GM
Sbjct: 180 IGFNRRELFNLKAQAEAATGLKCAVVYGALPPDVRKAQATLFNDPHSDYKLLAASDAIGM 239
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG 568
GLN +I RV+F ++ K++G + + ++++QIAGRAGR GS Y G
Sbjct: 240 GLNFDIGRVIFSTVWKFDGTQRRVLRPTELRQIAGRAGRYGSRYAVG 286
>gi|84997776|ref|XP_953609.1| ATP-dependent RNA helicase [Theileria annulata]
gi|65304606|emb|CAI72931.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 823
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 161/487 (33%), Positives = 255/487 (52%), Gaps = 63/487 (12%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEK 353
R + H GP NSGKT++A++ + + G+YC+PLRLLA E+F+ +N G+ C+LLTGQE
Sbjct: 175 RNVYLHVGPPNSGKTHDAIKALLSSSSGVYCAPLRLLAWEMFNTINNSGIKCALLTGQEV 234
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413
+ +H++CTVEM+ + ++VAV+DE+QM+ D RGY+WT+A L L E+H+CG
Sbjct: 235 -VDNGESHVSCTVEMIPFERRFEVAVLDEMQMIGDLTRGYSWTKAFLSLNVPELHICGSK 293
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVK 473
S + + + + GD+L +ER L V KT+ L + GDCVV FSR + F ++
Sbjct: 294 SCISITANLANIRGDKLEVFEHERLGNLKVMDKTI--GLDELEPGDCVVCFSRFDAFTIR 351
Query: 474 MAIE------KHTNHHCC--VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
IE + C ++YG LPPETR +Q FN + VL+ASD +GMG+N
Sbjct: 352 NNIESMNYTWNNMKEECVTSIVYGLLPPETRYEQIERFNKGVTK--VLIASDVIGMGVNA 409
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+IRR++FY L+K++G+ + P+ S+V QIAGRAGR G I P+G + + DL L E +
Sbjct: 410 SIRRLIFYRLTKFDGNLLRPLTVSEVHQIAGRAGRFG-IIPEGFVSCVREQDLKTLRELM 468
Query: 586 KQPFEVVKKVGLFP-------FFEQVELFAG---------QLSNYTFCQLLE---KFGEN 626
+ + K + P F+ ++ F G QL F ++ + G
Sbjct: 469 NKEVSQIDKAVISPPLDTIGAFYTTLKQFTGEQHSLINTIQLYLVIFMYIVTYECRIGSI 528
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLL--RFASS 684
R+ + +C I V+ LE + L E + P+ + L+ FA+S
Sbjct: 529 GRVGERFQMCDFAQINSVSKCLEGI-NLPFEILKEYLMVPMG----STLVSLIVRAFAAS 583
Query: 685 YSKNAPVSIA-MGMPK----------------------GSAKNDAELLDLETKHQVLSMY 721
+S V I+ + P+ + + ++ LE ++VL +Y
Sbjct: 584 HSLLNSVKISNIIQPEFLSNNTNSNESSDSNDLSDDSLDNLCKNTQIKRLEILYEVLDIY 643
Query: 722 LWLSHQF 728
WLS++F
Sbjct: 644 TWLSNKF 650
>gi|449018378|dbj|BAM81780.1| probable mitochondrial ATP-dependent RNA helicase Suv3
[Cyanidioschyzon merolae strain 10D]
Length = 843
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 246/460 (53%), Gaps = 70/460 (15%)
Query: 362 IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRK 421
++CTVEM VA++DE+QM+++ RG AWTRA+LGL ADE+HLCG PS +DVVR
Sbjct: 336 VSCTVEMADLYRPVQVAIVDEVQMIAERERGGAWTRAILGLPADELHLCGCPSAVDVVRA 395
Query: 422 ICSE-TGDELHEQHYERFKPLVVEAKTLLGDL-----RNVRSGDCVVAFSRREIFEVKMA 475
+ E ++L + YER PL V K LG+ R VR+GDC V FSRRE+F +K
Sbjct: 396 MIEEDCHEQLEVRTYERLGPLRVSEKA-LGETQRQWSRGVRAGDCFVTFSRRELFRIKHQ 454
Query: 476 IEKHTNH--HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFY 533
+E++ C VIYG+LPPETRR+QA LFN+ D +LVA+DAVGMGLNLNIRR++F
Sbjct: 455 LERNAIKPLQCAVIYGSLPPETRREQAQLFNEADTH-SILVATDAVGMGLNLNIRRMIFS 513
Query: 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD-----GLTTTLNLDDLDYL------- 581
+L K++G + P+ +++ QIAGRAGR PD G T DDL L
Sbjct: 514 ALDKFDGTQRRPLTTAEILQIAGRAGRYAG--PDRRPQCGEVTAFRQDDLRRLRSILHGA 571
Query: 582 -IECLKQPFEV----VKKVGLFPFFEQVELFAGQLS--------------------NYTF 616
I+ P + V K GL P E +E FA + +
Sbjct: 572 GIDTHGWPASIVPEKVTKAGLSPTREMMEAFAARCTAELASRSASGDDLMRRAATKRPPL 631
Query: 617 CQLLEKFGENCRLD--GSYFLCRHDHIKKVANMLEKV---QGLSLEDRFNFCFAPVNIRD 671
+L EKF ++D G YF+C +K++ +LE+ + ++ + ++ AP+ + D
Sbjct: 632 SELYEKFENLAQVDASGRYFVCDLTDVKRICRLLERARVDEWMTFDLLYSASMAPLKLDD 691
Query: 672 PKAMYHLLRFASSYSKNAPVSIAM-------------GMPKGSA--KNDAELLDLETKHQ 716
A +++F +++ + V + + G P+ S+ + +EL +LE+ +
Sbjct: 692 AAACEAMVQFMRAFTTSGVVRLTLQQCGSRMALRWLSGAPQWSSGPRTVSELRELESLYH 751
Query: 717 VLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
VL +Y W ++++ + F +A + AE + + L N
Sbjct: 752 VLDLYNWFANRYT-DAFVDRDRASELRQRCAEAVARGLAN 790
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 75/115 (65%)
Query: 249 KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
+ +F + +C + + +E+ + ADL+ P TWFP AR KRK+IYH G TNSGKT
Sbjct: 139 ELVFRAMLAYCRQRYGEELGSLARLAVCADLSLPATWFPLARARKRKVIYHAGKTNSGKT 198
Query: 309 YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIA 363
+ ALQRF+ A+ G+YC PLRLLA EV+D++N G+ C L TGQE + P S A
Sbjct: 199 HQALQRFLNAESGVYCGPLRLLAWEVYDRLNKQGIACILRTGQEFAMPPGSPSTA 253
>gi|384173494|ref|YP_005554871.1| ATP-dependent RNA helicase [Arcobacter sp. L]
gi|345473104|dbj|BAK74554.1| ATP-dependent RNA helicase [Arcobacter sp. L]
Length = 523
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 154/495 (31%), Positives = 261/495 (52%), Gaps = 22/495 (4%)
Query: 284 TWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV 343
T +P AR + RK+ ++ GPTNSGKTYNA+Q+ EA G+Y +PLRLLA+E ++ + +
Sbjct: 19 TLYPLARSLNRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 78
Query: 344 YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
SL+TG+E+ L + H+ T+EM+ D DVAVIDE+QM+ D RG+AW A++G
Sbjct: 79 NASLITGEEQMLDEEAAHVCSTIEMLDFDLDVDVAVIDEVQMLEDPDRGWAWVNAIIGCP 138
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
A +I + G + LD +++I + G+EL ++R L V K L + G ++A
Sbjct: 139 AKKIIMTGSVNALDAIKRIATYLGEELEIIKHQRKNELKVLPK--WTSLEKLEDGTALIA 196
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSR ++ ++K + VIYG L PE RR +A F ++ + +L+A+DA+ MGL
Sbjct: 197 FSRSDVLKLKQK--LQKKYSVSVIYGNLSPEVRRDEAKRFREKKTQ--ILIATDAIAMGL 252
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583
NL I+ ++F + K++G + +++ QIAGRAGR G + G D L Y+ +
Sbjct: 253 NLPIKTILFTTDEKFDGKSRRKITVNEIVQIAGRAGRYGH-FEAGYLGATRRDVLAYIAQ 311
Query: 584 CLKQPFEVVKKVGLFPFFE------QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
+ P +K P F+ Q+E A + + ++L+ F +N G +
Sbjct: 312 EFESPIRTIK-----PPFKVKINNNQLESLASHIKTNSLTKVLKFFADNMYFSGPFRAAN 366
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKN--APVSIAM 695
+ + A +++ L LED++ AP+ + + + +S K ++
Sbjct: 367 ISSMLEAAKIVDTRFNLKLEDKYLLAQAPITTKSTIILQAYESYIASVIKKRVCHYKPSI 426
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLT 755
+PK A +LL +E + + +S+YLWLS++ E+FP KA + + +SL
Sbjct: 427 TLPK-KAITQKDLLLVEDEVKKISLYLWLSYKM-PELFPDHDKAYILRNSFNSFIEKSLK 484
Query: 756 NANWKPESRQAGKPK 770
+ ++ + PK
Sbjct: 485 GNLIEEDNSEKSYPK 499
>gi|255600329|ref|XP_002537436.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223516363|gb|EEF24947.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 427
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 232/425 (54%), Gaps = 28/425 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+ ++ GPTNSGKTY AL+ +A G+Y +PLRLLAMEV D++ G+ C
Sbjct: 13 FTLARQLGRQHHFYVGPTNSGKTYQALETLRQAASGVYLAPLRLLAMEVRDRLMQAGIPC 72
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L+TG+E+ +VP + H A T+EM+ D +VAVIDEIQM+ D RG AWT AL+G+ A
Sbjct: 73 NLVTGEERVMVPGAKHTASTIEMLRPDMAVEVAVIDEIQMLMDPDRGSAWTAALVGVPAK 132
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL-------RNVRSG 458
++ +CG SV + ++ + H +R PL++E ++ G + ++ G
Sbjct: 133 QVFICGANSVTESCTRVLDALNEPYTLTHLQRMTPLLIEDHSICGARYHAAKLHKALQPG 192
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
D ++AFSR+++ + I + IYGAL PE RR ++ F E +LVA+DA
Sbjct: 193 DAIIAFSRKDVLTLAARI-RQWGLSVATIYGALSPEVRRGESARFA--SGEAQILVATDA 249
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578
+GMGLNL IRRV+F ++ K++G P+ ++++QIAGRAGR G +Y G T L DD
Sbjct: 250 IGMGLNLPIRRVIFANIHKFDGVAPRPLNATEMRQIAGRAGRHG-LYDTGYVTVLE-DDE 307
Query: 579 DYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ ++ + Q + V PF + L G + + + E + + +H
Sbjct: 308 QWHLQAMLQIDDTVP-----PFALPIALGGGNIETLSQQIPTWRLAECVEYLHNQYARQH 362
Query: 639 D--HIKKVANMLEKVQG---------LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
D H++ L+ Q LS+ D++ AP+ I+ P A + ++ ++ +
Sbjct: 363 DQQHLQWQVTALQYQQALLIDEIAPTLSMRDKYRLMCAPLAIQVPIARDYFMQCVTAVAT 422
Query: 688 NAPVS 692
P S
Sbjct: 423 QQPRS 427
>gi|395762745|ref|ZP_10443414.1| hypothetical protein JPAM2_13466 [Janthinobacterium lividum PAMC
25724]
Length = 662
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 160/501 (31%), Positives = 254/501 (50%), Gaps = 17/501 (3%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
+S +L + F AR + R+ I GPTNSGKT+ A++ ++AK GIY +PLRLLA+E
Sbjct: 169 QSINLAEYPASFEMARRLPRRFIALLGPTNSGKTHRAIEALVKAKSGIYLAPLRLLALEN 228
Query: 335 FDKVNALGVY-----CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
++++ + +L+TG+E+++V + H+A TVEM+ T + +VAVIDEIQM+ D
Sbjct: 229 YERLQEAAPHGKPLAVNLITGEERRVVDGATHVASTVEMLDTKTVVEVAVIDEIQMLGDP 288
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWT A+ G A ++L G P + + L +R PL +E T +
Sbjct: 289 DRGAAWTAAVCGAPAHTVYLVGAPEARRAIEALAERLDCPLEVHVLKRMAPLSME-PTAV 347
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
+RN+R GD V+AFSRRE+ + I + T +YG L PE RR QA F +D
Sbjct: 348 RKVRNLRRGDAVIAFSRREVLMWRDMITE-TGLSVATVYGNLSPEVRRAQAQRF--RDGT 404
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
DV+V +DA+ MGLN+ I R+V + KYNG + + + +QIAGRAGR G ++ +GL
Sbjct: 405 ADVVVGTDALAMGLNMPIARIVMTTCVKYNGREEEEISAALARQIAGRAGRYG-VHEEGL 463
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVG--LFPFFEQVELFAGQLSNYTFCQLLEKFGENC 627
+ + + + LK+ + G + P E + + + +LL +F N
Sbjct: 464 VAGYDNETHEVMRALLKEKLHPLNTSGFAVAPSLEHLHRISSVTGELSLSKLLRRFIHNI 523
Query: 628 RLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
+ +F R +K + LS+ D+F P++ + P +A + S+
Sbjct: 524 DVPDGFFFPRITEEQKERAVWLDTLPLSVADKFALSLVPISSKVPSLQTAWEHWAKNLSQ 583
Query: 688 NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIA 747
++ G +N L +E + S Y WLS++ E FP A+ ++ D +
Sbjct: 584 GKASTLRQHAYGGGTQN---LQQVEDTCRYYSAYAWLSYRLP-EFFPDIAVAQNLSRDAS 639
Query: 748 ELLGQSLTNANWKPESRQAGK 768
E + L N R AGK
Sbjct: 640 ERVDSILRAHNAASRGR-AGK 659
>gi|392377821|ref|YP_004984980.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
gi|356879302|emb|CCD00212.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
Length = 743
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 239/462 (51%), Gaps = 17/462 (3%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
DL + FP AR + R+++ GPTNSGKT++A++ A GIY +PLRLLA+EV ++
Sbjct: 242 DLARFEKLFPVARGLGRRLVLVIGPTNSGKTHHAIEALKGAWDGIYLAPLRLLALEVMER 301
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+NA SLLTG+E P + H A T+E++ D +VAVIDEIQM++D RG+AWT
Sbjct: 302 LNAESTPASLLTGEEAIATPGARHTASTIEVMDPDRPVEVAVIDEIQMLADPDRGWAWTA 361
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
AL+G A+ +++ G P +V ++ + G+ L ER PL + + L + V
Sbjct: 362 ALMGAPAETVYILGAPEARPLVERVAAHLGERLEVIELERKVPLTLIDRRL--NWEEVEP 419
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GD ++AFSRREI V+ + + +YGAL PE RR++A F E DV+VA+D
Sbjct: 420 GDALIAFSRREIHTVRDTL-RAKGLSVAAVYGALAPEVRRREAARF--LSGEADVVVATD 476
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--GLTTTLNL 575
A+GMGLNL RRV+F +L K++G + P+ ++VKQIAGRAGR G G+
Sbjct: 477 AIGMGLNLPCRRVLFTALEKFDGTSVRPLSATEVKQIAGRAGRFGKFESGEFGVVGRGTP 536
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635
L L+E + + P + A + LL+ + Y +
Sbjct: 537 QALRTLLEKADGRLRADAPLTVRPTRAMLARLAEHIGTEETVLLLDCVADARTAGSPYRV 596
Query: 636 CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAM 695
++++A ML++ + L+L + + P ++ D L + P +
Sbjct: 597 GDLSGMRRLALMLDERR-LTLPAKLDLLLIPADLEDEAEARILAAILGAVEAGEPSPLGR 655
Query: 696 GMPKGSAKNDAELLD---LETKHQVLSMYLWLSHQFKEEVFP 734
+P A+ D LD LE + +Y W + +F +FP
Sbjct: 656 FVP---ARLDG--LDGAALEGLSRACDLYYWAARKFP-TLFP 691
>gi|424827215|ref|ZP_18252024.1| helicase domain-containing protein [Clostridium sporogenes PA 3679]
gi|365980138|gb|EHN16174.1| helicase domain-containing protein [Clostridium sporogenes PA 3679]
Length = 588
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 250/467 (53%), Gaps = 58/467 (12%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + R M RK H G TN+GKTYN++++ ++KKGIY SPLR+LA+E F+K+N
Sbjct: 130 PKDEYKEVRHMNRKFYLHLGETNTGKTYNSMEKLKKSKKGIYLSPLRILALENFEKLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C L+TG+E+ + HI CT+E + + YDVA+IDEIQM+ D RG AWTRA+L
Sbjct: 190 GVECDLITGEEEIKKKGAKHICCTIEKLDINAEYDVAIIDEIQMIDDDQRGSAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L EIH+CG S +++ I + GDE + Y R PL +E + L++++ GD +
Sbjct: 250 LKCKEIHVCGALSTKELIINIIEDCGDEYELKEYFRNIPLKIEQEAF--KLKDIKKGDAL 307
Query: 462 VAFSRREIFEV-----KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
V FS++++ ++ + I+ VIYG LPPE R++Q F +D+ ++L+ +
Sbjct: 308 VTFSKKKVLQLADYYGDLGIK------TSVIYGNLPPEVRKKQYEQFISEDS--NILITT 359
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-- 574
DA+GMG+NL IRR++F + K++G+ + + +VKQI GRAG G IY G +
Sbjct: 360 DAIGMGVNLPIRRIIFMDIRKFDGNDMRYLTSQEVKQIGGRAGILG-IYDIGYIASYGNT 418
Query: 575 -------LDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
++ D I E + +P E + V P E++ L++
Sbjct: 419 QNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLALWS------------------ 460
Query: 627 CRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRFASS 684
R + S + D +K+ +L+ ++ L +++ + P ++ + M L++ +
Sbjct: 461 TREEKSLLYRKMDIGEKIL-VLDSIKNYKLPEKYQWQLLKVPFDVTNINIMNAFLKYVN- 518
Query: 685 YSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQVLSMYLWLSHQF 728
I +G K +K N +L DLE +Q L++Y LS F
Sbjct: 519 -------EIFIGNFKTISKPKLNSKDLYDLELYYQKLNLYYSLSKNF 558
>gi|70936926|ref|XP_739340.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56516265|emb|CAH84314.1| hypothetical protein PC300972.00.0 [Plasmodium chabaudi chabaudi]
Length = 389
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 210/362 (58%), Gaps = 30/362 (8%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L IF+ F + + + + + D T+ + + RK+ + GPTNSGKT+
Sbjct: 29 LLTIFLSFIKRYYHKQWIFYEHIKKLCDFTEINEIRKMKNNLNRKLYLYVGPTNSGKTHE 88
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
A +F+++K G+YCSPLRLL E+ K+ L +LLTGQE S H CT+EM
Sbjct: 89 AFNKFIDSKNGLYCSPLRLLTWEIHKKLLNLKKSANLLTGQEIIKKANSTHTVCTIEMTP 148
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
+E YD A+IDEIQM++++ RGYAWT L+ L +EI+LCG ++++++++ D++
Sbjct: 149 LNEKYDCAIIDEIQMINNSIRGYAWTHVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQV 208
Query: 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490
+ ++R L +E + L +V++GDC+++FSR I +K +EK N VIYG
Sbjct: 209 IIKRFKRLNKLKLEKN--IQPLDDVKTGDCIISFSRNNIMLLKNKLEK-LNKRVFVIYGT 265
Query: 491 LPPETRRQQANLFN-----------DQDNEF------DVLVASDAVGMGLNLNIRRVVFY 533
LPPE++++Q LFN + NE VLVA+D +GMGLN+ I+R++FY
Sbjct: 266 LPPESKKKQIELFNYYCELAKSSNSNIKNETHGIEKETVLVATDVIGMGLNIKIKRIIFY 325
Query: 534 SLSKYNGDKIIPVPGSQVKQIAGRAGR-----RGSIYPDGLTTTLNLDDLDYLIECLKQP 588
SL KY+GD I + S++ QIAGRAGR G+ DG T +N +D+ + LK
Sbjct: 326 SLKKYDGDIIRYLNVSEILQIAGRAGRFDENCSGN-SSDGFVTCVNYEDM----KILKNL 380
Query: 589 FE 590
FE
Sbjct: 381 FE 382
>gi|34497544|ref|NP_901759.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34331003|gb|AAQ59761.2| probable ATP-dependent RNA helicase [Chromobacterium violaceum ATCC
12472]
Length = 562
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 171/505 (33%), Positives = 267/505 (52%), Gaps = 26/505 (5%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
++ +L++ F A M+R I GPTNSGKT+ A++ +AK G+Y +PLRLLA+E
Sbjct: 63 DAVNLSRYPESFATAYAMQRHFIAVLGPTNSGKTHAAMEHLQKAKSGVYLAPLRLLALEN 122
Query: 335 FDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
+ ++ GV SL+TG+++KL P + H+A TVEM++ + +VAVIDEIQ++ D RG A
Sbjct: 123 YTRLQQAGVAVSLITGEQRKLHPDATHVASTVEMLNPERQVEVAVIDEIQLLDDPDRGAA 182
Query: 395 WTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
WT A+ G+ A I+L G P + + + + G L + ER L ++ LL L+N
Sbjct: 183 WTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTLERKTALQMDKAPLL-SLKN 241
Query: 455 VRSGDCVVAFSRREIFEVK-MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
++ GD ++AFSRRE+ + IE+ + IYG L PE R+ QA F E V+
Sbjct: 242 LKPGDVLIAFSRREVLNWRDKVIEQGLS--VSAIYGNLSPEVRQAQAERF--VAGETQVV 297
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTT 571
VA+DA+GMGLN RR++F + SK++G + +I P KQIAGRAGR G + G
Sbjct: 298 VATDAIGMGLNTPARRIIFTTASKWDGYAEGVIAAP--LAKQIAGRAGRFGK-HETGYVA 354
Query: 572 TLNLDDLDYLIECLKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629
+ + L+Q E + G F P + +E + QLL F ++ +
Sbjct: 355 GFDGLTHKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQATGEIRLKQLLSLFTKHINV 414
Query: 630 DGSYFLCRH--DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS--SY 685
+FL + D ++K A L+ + LSL DR+ F P++ + P L +A +
Sbjct: 415 HDEFFLPANLSDQMEK-AEWLDALP-LSLADRYTFSLCPISTKIPMLENALHDWAEQRAR 472
Query: 686 SKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATD 745
K AP+ MG +N EL LE ++ + Y WL ++ E FP + A+ +
Sbjct: 473 GKAAPLLRMMGT---GGRN--ELQYLEDSCKLYAAYAWLGYRMP-ETFPDGEMAQMLMLS 526
Query: 746 IAELLGQSLTNAN-WKPESRQAGKP 769
+E + L N K + R+ +P
Sbjct: 527 TSERIDGLLQVQNAQKRKGRRGSEP 551
>gi|365857845|ref|ZP_09397822.1| helicase protein [Acetobacteraceae bacterium AT-5844]
gi|363715418|gb|EHL98863.1| helicase protein [Acetobacteraceae bacterium AT-5844]
Length = 777
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 259/465 (55%), Gaps = 17/465 (3%)
Query: 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLA 331
A+ A L + F AR +KR+I GPTNSGK++ AL R +A+ G+ +PLRLLA
Sbjct: 285 AVARVAALDRYAAHFATARALKRRITLVTGPTNSGKSHTALDRLSKAESGLALAPLRLLA 344
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
E D + GV SL TG+E+ ++P S H+A TVEM DVA++DE Q++ D R
Sbjct: 345 HEFRDALAVRGVEASLATGEERIVMPGSRHLAATVEMCPLHNPVDVAIVDEAQLLHDRDR 404
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G AWT A++G+ A E+ + G P + +V +I + GD++ + ER PL A T
Sbjct: 405 GAAWTAAIMGVPAREVFVLGAPEAIPMVERIAALCGDDVEKVSLERKGPL--RAATNPVR 462
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD 511
L ++R GD ++AFSRR++ +++ + + VIYGAL PE RR +A F ++ E D
Sbjct: 463 LADLRPGDALIAFSRRDVLDMRAELVRR-GRRVAVIYGALSPEVRRAEAARF--RNGEAD 519
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTT 571
++VA+DA+GMGLNL IRRV+F +L K++G+ + ++KQI GRAGR G + +G+ +
Sbjct: 520 IVVATDAIGMGLNLPIRRVIFTTLKKFDGEARRDLNAQEIKQIGGRAGRYGK-FEEGVVS 578
Query: 572 TL----NLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC 627
L + D + +++ QP E ++ + + P + + A ++ + + +L +
Sbjct: 579 VLAGAGSPDFVRHMLNAPPQPPEELRPL-VQPDADIIANVAAEIGSDSLFGVLARIRRAV 637
Query: 628 -RLDG-SYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
RLD +Y L + +A+ ++ V GLSL DR+ + PV+ RD + L R+A +
Sbjct: 638 LRLDDPNYRLADLTQAQSIASAIDGV-GLSLMDRWTYAMCPVDERD-NGITRLARWAVDH 695
Query: 686 SKNAPV--SIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ V A +P EL E H+ L + WL+ +F
Sbjct: 696 AAGRAVIPPSAGRLPPPEQATGEELQRGEKVHKRLVAWRWLALRF 740
>gi|149180840|ref|ZP_01859342.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148851359|gb|EDL65507.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 858
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 167/486 (34%), Positives = 259/486 (53%), Gaps = 41/486 (8%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK 354
+ + H G TN+GKT+ AL+ EA GIY +PLRLLA+EV+D++N GV C+L TG+E+K
Sbjct: 374 RYVLHIGETNTGKTHQALESMREAGSGIYLAPLRLLALEVYDRLNNEGVPCNLKTGEEEK 433
Query: 355 LVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
VP +NH+ACTVEM E +DV VIDE QMM+D RG++W +A+ A E+H+ G +
Sbjct: 434 TVPGANHVACTVEMFYEKEEFDVVVIDEAQMMADKDRGFSWYKAITKARAREVHIIGSRN 493
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
V ++ + E++E Y R PL VE + L++ + GD +V FSRR + E
Sbjct: 494 VKPMLLGLLENCDVEINE--YNRDIPLQVEEREF--SLKHAKRGDALVCFSRRRVLETAS 549
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
++ + H +IYG++PPETR++Q F E V+VA+DA+GMGLNL IRR+VF
Sbjct: 550 KLQ-NNGHSVSMIYGSMPPETRKKQMQRFI--KGETRVIVATDAIGMGLNLPIRRIVFLE 606
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKK 594
K++G + + +VKQIAGRAGR+G IY G D+ + + L Q E V+
Sbjct: 607 NDKFDGTRRRILTSQEVKQIAGRAGRKG-IYDVGKVAFTK--DIKKMSKLLDQEDEPVQS 663
Query: 595 VGLFP---FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
+ P FE+ + + L F +L EKF S F + + + + E V
Sbjct: 664 FAIAPTNSIFERFQKYYHDLGR--FFELWEKF-------ESPFGTQKASLSEERELYELV 714
Query: 652 QG------LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS-IAMGMPKGSAKN 704
+G LS+ D + F P + ++P+ L + +A +S + PK KN
Sbjct: 715 RGTEIEGRLSMMDLYGFLHLPFSKKEPELTSQWLE-----TMDAIISGTELPEPKLKRKN 769
Query: 705 DAELLDLETKHQVLSMYLWLSHQFKE--EVFPYAKKAEAMATDIAELLGQSLTNANWKPE 762
L E ++ + ++L ++ E + + E +A + E L +++ K
Sbjct: 770 ---LEQQEVAYKAVGLHLLFLYRLGRGTEAIYWERLREDIADGVHESLNTEVSSMTLK-- 824
Query: 763 SRQAGK 768
+Q GK
Sbjct: 825 CKQCGK 830
>gi|374292022|ref|YP_005039057.1| putative DNA/RNA helicase [Azospirillum lipoferum 4B]
gi|357423961|emb|CBS86824.1| putative DNA/RNA helicase [Azospirillum lipoferum 4B]
Length = 733
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 207/374 (55%), Gaps = 7/374 (1%)
Query: 278 DLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
D ++ FP AR M R+++ GPTNSGKT+ A+ EA+ G+Y +PLRLLA+EV ++
Sbjct: 236 DFSRFERLFPVARGMNRRLVLVIGPTNSGKTHRAITALREARDGVYLAPLRLLALEVMER 295
Query: 338 VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
+NA G +L+TG+E+ P + H A T+E++ D +VAVIDEIQM++D RG+AWT
Sbjct: 296 LNAEGTPTTLITGEEEIRTPGARHTASTIEVMDPDRPVEVAVIDEIQMLADPARGWAWTA 355
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
AL+G+ A+ +++ G P V +V + + G+ L +R PL + + L D V
Sbjct: 356 ALMGVPAETVYILGAPEVRPLVERAAAHLGEALEVVELDRKTPLSMLDRRL--DWAEVER 413
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GD ++AFSRRE+ V+ + IYGAL P RR++A F E DV+VA+D
Sbjct: 414 GDALIAFSRREVHSVRDTLLAQ-GLSVAAIYGALAPAVRRREAARF--LSGEADVVVATD 470
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--GLTTTLNL 575
A+GMGLNL RRV+F +L K++G + P+ ++VKQIAGRAGR G G+
Sbjct: 471 AIGMGLNLPCRRVLFTALEKFDGSSVRPLTATEVKQIAGRAGRFGQFEEGHFGVIARGTP 530
Query: 576 DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635
L L+E + + + P + A + + L+E FG + L
Sbjct: 531 TALKRLLEAPDRRLRADAPLPVRPTRAMLARLASHIDSDETRLLVECFGTAETAGSPFRL 590
Query: 636 CRHDHIKKVANMLE 649
+ + A ML+
Sbjct: 591 ADLSALHRAAPMLD 604
>gi|383757949|ref|YP_005436934.1| ATP-dependent RNA helicase [Rubrivivax gelatinosus IL144]
gi|381378618|dbj|BAL95435.1| ATP-dependent RNA helicase [Rubrivivax gelatinosus IL144]
Length = 751
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 163/454 (35%), Positives = 254/454 (55%), Gaps = 23/454 (5%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR +R + + GP NSGKT+ A +R +A+ G Y +PLRLLA+E D++ A GV C
Sbjct: 266 FPKARAQQRTVKLYVGPPNSGKTHAAFERLCQARDGTYLAPLRLLALEGRDRMVARGVAC 325
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SLLTG+E + ++ T+EMVST+ +VAV+DE QM+ D RG+AWT+A++ + A
Sbjct: 326 SLLTGEENVPAEGARFVSSTIEMVSTNNPVEVAVVDEAQMIFDPARGWAWTQAIVAVPAS 385
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E+ + + + + G+ + +ER + + + + + L ++SGD VVAFS
Sbjct: 386 ELIIICSEYAVSAIENLLGVCGERCTVRRFERKQHVELLPRPV--PLGGLQSGDAVVAFS 443
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RR++ ++ AI + VIYGALPPE RR++A F ++E +LVA+DA+GMGLNL
Sbjct: 444 RRDVLTLRDAIAAN-GRPVSVIYGALPPEVRRREAERFASGESE--ILVATDAIGMGLNL 500
Query: 526 NIRRVVFYSLSKYN--GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD---LDY 580
IRRV+F +LSK++ GD+++ S+V QIAGRAGR G + +G T L+L +
Sbjct: 501 PIRRVLFSTLSKFDGVGDRLL--DESEVHQIAGRAGRFG-MQEEGFTGVLDLAEPTAART 557
Query: 581 LIECL-KQPFEVVK-KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF-LCR 637
L E L +QP + K + P V A +L ++L F E +LD ++F +
Sbjct: 558 LKELLHRQPKAPRQFKAPVAPNGWHVRTIAERLQATRLREVLGVFVERLKLDDAHFAVAE 617
Query: 638 HDHIKKVANMLEKVQG-LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
D + +A L+ G L L RF + APV+ R + L +A ++K A G
Sbjct: 618 LDAMLALAEQLDHAAGALPLAARFVYAQAPVDTRSEDTVQEYLDWARGHAKGA----RAG 673
Query: 697 MPK--GSAKNDAELLDLETKHQVLSMYLWLSHQF 728
P + + L +E + +++LWL +F
Sbjct: 674 RPYFLDAVDGWSRLDRIEQALRACTLWLWLDLRF 707
>gi|374998481|ref|YP_004973980.1| putative helicase [Azospirillum lipoferum 4B]
gi|357425906|emb|CBS88805.1| putative helicase [Azospirillum lipoferum 4B]
Length = 762
Score = 245 bits (625), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 246/461 (53%), Gaps = 34/461 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR M RK+ + GPTNSGKT+ A+ R EA+ G Y +PLRLLA+E + + G C
Sbjct: 204 FATARAMIRKLRLYVGPTNSGKTHAAMDRLAEAESGCYLAPLRLLALEGQEALETRGRPC 263
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+E+ + P + + T+EMV+T +++ VIDEIQM+ D RG+AWT+A+ G+ A
Sbjct: 264 SLVTGEERDVRPGAAFTSSTIEMVNTSKVWGACVIDEIQMIGDPDRGWAWTQAVAGVAAP 323
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
EI + G + V+++ G+EL + R PL V+ + + L V+ GD ++AFS
Sbjct: 324 EILMTGSADAIPYVKRLADAMGEELEVIEFTRKSPLRVQEERV--KLEEVKPGDALIAFS 381
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R+++ ++ + NH+ VIYGAL PE ++A ++ DVLVA+DA+GMGLNL
Sbjct: 382 RKDVMALRHDLLGR-NHNVAVIYGALSPEV--RRAEARRFREGTADVLVATDAIGMGLNL 438
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+ RVV + KY+G + + S+++QI GRAGR G ++ +G L+ ++++ + L
Sbjct: 439 PVARVVLSTTRKYDGREERELTASEIRQIGGRAGRFG-MHEEGRVAVLDGENINPVRRAL 497
Query: 586 KQPFEVVK--KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKK 643
P + + + P VE A +L + ++L G+ L R + +
Sbjct: 498 TSPPVPPEDPRSWISPNLSHVEAIAQELDTDSLAKVLRTAGQE--------LLRANQTFR 549
Query: 644 VANMLEKVQGLSLEDRFNFCFA--------PVNIRDPKAMYHLLRFASSYSKNAPVSIAM 695
+ ++ +++Q S DR A P++ RD + LR ++ N I
Sbjct: 550 MTDLEQRIQAASAVDRAKLPLAQRDMLARCPIDTRD----QNNLRLLGGWAVNQGRGIPN 605
Query: 696 GMP------KGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
P + S D EL E + L+ Y WL+++F +
Sbjct: 606 AAPDAAERFRHSVGTDVELEKAERAVKELTAYAWLAYRFPD 646
>gi|171059674|ref|YP_001792023.1| helicase domain-containing protein [Leptothrix cholodnii SP-6]
gi|170777119|gb|ACB35258.1| helicase domain protein [Leptothrix cholodnii SP-6]
Length = 757
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 262/478 (54%), Gaps = 36/478 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR ++R + + GP NSGKTY A +R +A G Y +PLRLLA+E D++ GV C
Sbjct: 276 FVKARNLQRNVTLYVGPPNSGKTYAAFERLAQAIDGAYLAPLRLLALEGRDRLVGRGVPC 335
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SLLTG+E + ++ T+EMVST+ DVAVIDE QM+ D RG+AWT+A++ + A
Sbjct: 336 SLLTGEENVPAEGARVVSSTIEMVSTNTPIDVAVIDEAQMIFDNSRGWAWTQAIVAVPAR 395
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFK--PLVVEAKTLLGDLRNVRSGDCVVA 463
E+ + + + + G+ + +ER + L+ A +L G ++ GD VVA
Sbjct: 396 EVIIICSAYAVPAIENLLGLCGERCTVREFERKQHVELLPHAVSLSG----LKLGDAVVA 451
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSRRE+ ++ I + H VIYGALPPE RR++A F E VLVA+DA+GMGL
Sbjct: 452 FSRREVLSLRDKIAA-SGHPVSVIYGALPPEVRRREAERF--AHGESHVLVATDAIGMGL 508
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL---------N 574
NL IRRV+F +L+K++G + S+V QIAGRAGR G ++ +G T L +
Sbjct: 509 NLPIRRVLFSTLTKFDGQADRSLSESEVHQIAGRAGRYG-MHEEGFTGVLKEAEPSAERS 567
Query: 575 LDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF 634
L DL + + F K + P V+ + +L+ ++L+ F + +LD ++F
Sbjct: 568 LKDLLHRAPRAPRDF----KAPVAPNGWHVDTISRRLNKTRLREVLDVFMDQLKLDDAHF 623
Query: 635 LCRHDHIKKVANMLEKVQ----GLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP 690
++++ ++ EK+ GL+L++RF + APV+ R + L ++S++++
Sbjct: 624 AV--AELEQMLDLAEKLDISAAGLTLKERFTYAQAPVDTRTESQVQEYLEWSSNHARTG- 680
Query: 691 VSIAMGMP--KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDI 746
G P + L +E + +++LWL +F V+ + + A+ +D+
Sbjct: 681 ---RAGTPWFLQGVDGHSRLDRMEQALRACTLWLWLDLRFP-GVYGHLDEVIALRSDL 734
>gi|429765880|ref|ZP_19298160.1| helicase protein [Clostridium celatum DSM 1785]
gi|429185733|gb|EKY26707.1| helicase protein [Clostridium celatum DSM 1785]
Length = 912
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 192/301 (63%), Gaps = 7/301 (2%)
Query: 274 IESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAME 333
I+ L P + AR MKR H G TN+GKTY++++R MEA+ G+Y +PLRLLA+E
Sbjct: 385 IKDIILDNPINEYKEAREMKRHFYLHVGETNTGKTYSSIERLMEAESGVYLAPLRLLALE 444
Query: 334 VFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
+ DK+N+ + CSLLTG+E+ ++ ++ H++ T+E + YDV VIDE QM++D RG+
Sbjct: 445 IQDKLNSQNIRCSLLTGEEEDIISYAYHVSSTIEKLELGTYYDVCVIDEAQMIADNQRGW 504
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL- 452
AWTRA++G+++ EIH+C P D++ K+ ++ GD ++R L+ E K DL
Sbjct: 505 AWTRAIIGVLSPEIHICMAPEAKDIIIKLINDCGDTYEVIEHKRDTELIFEDKKF--DLN 562
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
++V+ GD +V F +R+ V + + N +IYG+LP TR++Q F E +V
Sbjct: 563 KDVKKGDALVVFGKRKALAVSAQL-LNNNIKTSIIYGSLPYSTRKKQFERF--LSGETEV 619
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
+V +DA+GMG+NL I+R+VF KY+G + + +++KQIAGRAGRRG +Y G T
Sbjct: 620 IVCTDAIGMGVNLPIKRIVFLETRKYDGVSLRKLNIAEIKQIAGRAGRRG-MYNKGYVAT 678
Query: 573 L 573
+
Sbjct: 679 M 679
>gi|410456673|ref|ZP_11310531.1| helicase [Bacillus bataviensis LMG 21833]
gi|409927715|gb|EKN64844.1| helicase [Bacillus bataviensis LMG 21833]
Length = 860
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 221/380 (58%), Gaps = 18/380 (4%)
Query: 292 MKRKIIY--HCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349
+KR + Y H G TN+GKT++AL++ EA+ G+Y +PLRLLA+EVFDK+NA G CSL T
Sbjct: 369 LKRHVRYVLHIGETNTGKTHHALEQMKEAESGLYLAPLRLLALEVFDKLNAEGTPCSLKT 428
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
G+E+K+V + HI+CTVEM E+Y+V VIDE QM++D RG++W +A+ A E+H+
Sbjct: 429 GEEEKMVAGAQHISCTVEMFHEKEVYEVVVIDEAQMITDKDRGFSWYKAITKANAREVHI 488
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G + ++ ++ E+HE Y R PL VE K +++V+ GD ++ FSRR +
Sbjct: 489 IGSRNSKTMLLELLGNADIEIHE--YSRDTPLEVEKKEF--HIKHVKKGDALICFSRRRV 544
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
E ++ + H +IYG++PPETR++Q FN + V+V++DA+GMGLNL IRR
Sbjct: 545 LETASRLQ-NDGHSVSMIYGSMPPETRKKQIEQFNKGRTK--VIVSTDAIGMGLNLPIRR 601
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF 589
+VF K++G + + +VKQIAGRAGR+G IY G + D+ + L Q
Sbjct: 602 IVFLENDKFDGTRRRLLTSQEVKQIAGRAGRKG-IYDVGKVAFTS--DIRKMQNLLLQED 658
Query: 590 EVVKKVGLFP---FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVAN 646
E V + P FE+ + + L TF +L KF E+ + L + ++
Sbjct: 659 EPVHTFAIAPTNSVFERFQRYYHDLG--TFFELWGKF-ESPKGTKKATLSEEKSLYQLIA 715
Query: 647 MLEKVQGLSLEDRFNFCFAP 666
E LSL D + F P
Sbjct: 716 GTEIEARLSLMDLYGFLHLP 735
>gi|311032935|ref|ZP_07711025.1| helicase domain-containing protein [Bacillus sp. m3-13]
Length = 862
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 123/268 (45%), Positives = 178/268 (66%), Gaps = 7/268 (2%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK 354
+ + H G TN+GKT+ ALQR EAK G+Y +PLRLLA+EV+D +N+ GV CSL TG+E+K
Sbjct: 374 RYVIHIGETNTGKTFQALQRMKEAKSGLYLAPLRLLALEVYDTLNSDGVPCSLKTGEEEK 433
Query: 355 LVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
L P ++H + TVEM + Y+V VIDE QM++D RG++W +A+ ADE+H+ G S
Sbjct: 434 LSPGASHFSSTVEMFYEKDHYEVIVIDEAQMIADKDRGFSWYKAITKANADEVHIVGSFS 493
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
+ ++V ++ E++E Y R PL VE + LR+ + GD +V FSR+ + E
Sbjct: 494 MREMVLQLLGNAAIEINE--YTRDTPLQVEDRPFT--LRDTKRGDALVCFSRKRVLET-A 548
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
+I ++ H +IYG++PPETR++Q F D E V+VA+DA+GMGLNL IRRVVF
Sbjct: 549 SILQNNGHQVSMIYGSMPPETRKKQMQRF--IDGETTVIVATDAIGMGLNLPIRRVVFLQ 606
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
K++G + + +VKQIAGRAGR+G
Sbjct: 607 NEKFDGTRRRRLTSQEVKQIAGRAGRKG 634
>gi|386284065|ref|ZP_10061288.1| hypothetical protein SULAR_02418 [Sulfurovum sp. AR]
gi|385344968|gb|EIF51681.1| hypothetical protein SULAR_02418 [Sulfurovum sp. AR]
Length = 938
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 163/488 (33%), Positives = 260/488 (53%), Gaps = 17/488 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR +KRKII+H GPTNSGKTY A+Q A G Y +PLRLLA+E ++ + +
Sbjct: 427 FPLARELKRKIIFHVGPTNSGKTYAAMQELQTATTGYYLAPLRLLALEGYENLKKEDIAV 486
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+E+ L S HI+ T+EM++ DV VIDEIQM++D RG+AW AL+G+ A
Sbjct: 487 SLITGEEEILDEESTHISSTIEMMNGSVDVDVCVIDEIQMIADRDRGWAWANALIGVPAR 546
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
++ L G L V+++C +EL H+ER L + ++++ VVAFS
Sbjct: 547 KVILTGSSDALHAVKELCEYLDEELEIVHFERKNELTMLPNP--TSMKHIEPQTAVVAFS 604
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RR++ +K + + + V+YG L PE RR++A F + +++ +LVA+DA+ MGLNL
Sbjct: 605 RRDVLSLKQQLSE--KYSVSVVYGNLSPEVRREEARRFREGESQ--ILVATDAIAMGLNL 660
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
I+ ++F +K++G + + ++V QI+GRAGR G G L+ LD +
Sbjct: 661 PIKTLLFSKDNKFDGLRRRELLPTEVLQISGRAGRYG-FEEKGYVGALDETALDTITSAF 719
Query: 586 KQPFEVVK-KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKV 644
P +K V + E V L L +L F EN +G + D + ++
Sbjct: 720 HMPLPDLKLPVSVMASLEHVMLIGEILETDNILDILAFFSENMEFEGPFVAANIDSMLEI 779
Query: 645 ANMLEKVQGLSLEDRFNFCFAPVNIRDP--KAMYHLLRFASSYSKNAPVSI--AMGMPKG 700
A ++ + L L+ R+ AP +I P ++++H R+ V +P
Sbjct: 780 AAIVSEY-SLDLKTRYYLSCAPASISSPYIESVFH--RYIRQIEAGGKVLYIPPRDLPAF 836
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWK 760
+ ND LL+ E + + +S+YLWLS +F ++F KA A + + SL ++
Sbjct: 837 AQTNDM-LLNAEDRVREISLYLWLSFKFP-DIFQDTDKAVAARVRLNNFIENSLRQGHFT 894
Query: 761 PESRQAGK 768
+ R+ GK
Sbjct: 895 KQCRRCGK 902
>gi|188579978|ref|YP_001923423.1| helicase domain-containing protein [Methylobacterium populi BJ001]
gi|179343476|gb|ACB78888.1| helicase domain protein [Methylobacterium populi BJ001]
Length = 778
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/450 (34%), Positives = 232/450 (51%), Gaps = 18/450 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I++H GPTNSGKTY ALQ A G Y +PLRLLA+E ++ + G+
Sbjct: 300 FGAARRLNRRILFHMGPTNSGKTYAALQALTAAPTGAYLAPLRLLALENYEALRERGLRA 359
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
++TG+E P H A T+E DVAVIDEIQM+SD RG+AWT AL G+ A
Sbjct: 360 GMVTGEEVLGEPDPTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAR 419
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ +CG L VR+ + L +ER PL++ + + L V GD VVAFS
Sbjct: 420 TVIVCGSDDALSYVRRAAEAANESLEVIPFERKSPLILLDEPV--PLEKVEPGDAVVAFS 477
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RR + E + I H IYGAL PE RR +A F+ E D+LV +DA+GMGLNL
Sbjct: 478 RRAVHENR-EILVARGHRVATIYGALSPEVRRAEAARFH--SGEADILVTTDAIGMGLNL 534
Query: 526 N-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584
++R+VF ++ K++G + S+++QIAGRAGR G + G + ++ +
Sbjct: 535 GPLKRIVFSAMRKWDGVGERALTNSEIRQIAGRAGRYGH-HEVGYVAATDPTAIEPIRAA 593
Query: 585 LK-QPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH-DH 640
L P + P + A ++ + +++ F GS F +
Sbjct: 594 LAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLHEVMTHFARATFYAGSPFQPSALEE 653
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKG 700
+ ++A ++++ + L +E++F F P++ RD AM L R++ + V P
Sbjct: 654 VLEIARIIDRAR-LPIEEKFVFSVCPIDRRDEIAMGMLERWSQVRAAGGAV------PAL 706
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
A EL E ++ S YLWLS +F E
Sbjct: 707 RASLAGELDYQERTVKLASAYLWLSRRFPE 736
>gi|410943887|ref|ZP_11375628.1| RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 821
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 172/501 (34%), Positives = 264/501 (52%), Gaps = 20/501 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK+Y AL A+ G+ +PLRLLA E + + GV
Sbjct: 302 FRTARSLKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFREALLNRGVPA 361
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +P + H+A TVEM + DVA+IDE QM++D RG AWT A++G+ A
Sbjct: 362 SLATGEERIEMPGARHLAATVEMCPFHKPVDVAIIDEAQMLADPDRGAAWTAAIMGVPAR 421
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G + +V++I D + E H ER PL L +L +GD V+AFS
Sbjct: 422 HVFILGAADCIPLVKRIAELCDDPVDEIHLERKSPLKAGGTLHLSEL---TAGDAVIAFS 478
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ + V+YGAL PE RR +A FN D D+L+A+DA+GMGLNL
Sbjct: 479 RREVLDMRAELMAR-GRRVAVVYGALSPEVRRAEAARFNSGDA--DILIATDAIGMGLNL 535
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIEC 584
+IRRVVF +L K++G + + +VKQI GRAGR G + +GL L ++ +
Sbjct: 536 SIRRVVFSALRKFDGRQTRDLISQEVKQIGGRAGRFGK-HEEGLVCVLAESGSPTFVRQM 594
Query: 585 LKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHDH 640
L P E V ++ P + V A ++ + + +L + D +Y L +
Sbjct: 595 LAAPPEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTRIKRAVLRPDDPNYRLADMEQ 654
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG--MP 698
++A LE V+GL L R+ + P++ RD + L+ +A+ ++ PV +P
Sbjct: 655 SLEIAAALEGVEGLDLTTRWTYAMCPIDERD-NGIQRLVSWAADHAAGRPVPPPGTGRLP 713
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
EL E +H+ L + WL+ +F E +P + AE + + + + Q L +
Sbjct: 714 HPEQAGREELERAEKRHKRLVAWRWLALRFP-EAYPAQQNAEINTSILNDWIEQVLRTQS 772
Query: 759 WKPES--RQAG--KPKLHQQR 775
ES +Q G KPK + R
Sbjct: 773 RMRESQKQQRGNFKPKERRDR 793
>gi|296536910|ref|ZP_06898948.1| helicase domain protein, partial [Roseomonas cervicalis ATCC 49957]
gi|296262764|gb|EFH09351.1| helicase domain protein [Roseomonas cervicalis ATCC 49957]
Length = 505
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/452 (35%), Positives = 249/452 (55%), Gaps = 18/452 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR M R+ I GPTNSGK++ AL R +A+ G+ +PLRLLA E + + + GV
Sbjct: 28 FATARAMIRRFIIVTGPTNSGKSHTALDRLAQAESGLALAPLRLLAHEFREALASRGVEA 87
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L TG+E+ L P S H+A TVEM DVA+IDE Q++ D RG AWT AL+G+ A
Sbjct: 88 ALSTGEERILAPGSKHLAATVEMCPFHSPVDVAIIDEAQLLHDRDRGAAWTAALMGVPAR 147
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL-LGDLRNVRSGDCVVAF 464
E+ + G P + +V++I GDE+ E +R PL K + +G+L+ GD +VAF
Sbjct: 148 EVFVLGAPECVPMVKRIAQLCGDEVEEITLQRKGPLHASTKPVPMGELKQ---GDALVAF 204
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
SRR++ +++ A+ V+YGAL PE RR +A F ++ E D++VA+DA+GMGLN
Sbjct: 205 SRRDVMDLREALVAR-GRKVAVVYGALSPEVRRAEAARF--RNGEADIIVATDAIGMGLN 261
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD----LDY 580
L IRRVVF +L K++G++ + +VKQI GRAGR G + G+ + L +
Sbjct: 262 LPIRRVVFSTLRKFDGEERRELTSQEVKQIGGRAGRYGH-HEGGVVSVLAGGGDPGFVQA 320
Query: 581 LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRH 638
++E P E ++ + P + + A ++ + +L + + D +Y L
Sbjct: 321 MLEAPPAPPEELRPQ-VQPDADIIAAVAAEIGTDSLFGVLARIKRAVLRKDDPNYRLADL 379
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS--IAMG 696
+A+ ++ V GLSL DR+ + PV+ RD + L R+A + PV+ +A
Sbjct: 380 TQQMAIASAIDGVAGLSLADRWTYAMCPVDERD-NGVTRLARWAVDHGGGRPVAPPLAGR 438
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+P EL E H+ L + WL+ +F
Sbjct: 439 LPPPERATGEELQRAEKVHKRLVAWRWLALRF 470
>gi|317128751|ref|YP_004095033.1| helicase [Bacillus cellulosilyticus DSM 2522]
gi|315473699|gb|ADU30302.1| helicase domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 850
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 223/387 (57%), Gaps = 14/387 (3%)
Query: 287 PFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCS 346
P R ++ + H G TN+GKT+ AL+ EAK G+Y +PLRLLA+EV+DK+N GV CS
Sbjct: 359 PLGRNIR--YVLHIGETNTGKTFQALKSMSEAKSGLYLAPLRLLALEVYDKLNGEGVPCS 416
Query: 347 LLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
L TG+E+K V +NH +CTVEM E +DV VIDE QM++D RG++W +A+ A+E
Sbjct: 417 LKTGEEEKEVDNANHYSCTVEMFHEKEYFDVIVIDEAQMIADKDRGFSWYKAITKANANE 476
Query: 407 IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
+H+ G + +++ ++ ++ +HE YER PL VE K +L+ + GD +V FSR
Sbjct: 477 VHIIGSVNSKEMILQLLGDSNVVIHE--YERDIPLQVEKKEF--NLKQTKKGDALVCFSR 532
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
R + E +E + H ++YG++PPETR++Q LF D + V+V++DA+GMGLNL
Sbjct: 533 RRVLETASNLE-NNGHRVSMVYGSMPPETRKKQMKLF--IDGKTTVIVSTDAIGMGLNLP 589
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-LTTTLNLDDLDYLIECL 585
IRR+VF K++G + + +VKQIAGRAGR+G IY G + T + + L+
Sbjct: 590 IRRIVFLENDKFDGTRRRRLSSQEVKQIAGRAGRKG-IYDVGKVAFTKEIKLMKRLLNQQ 648
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645
P + FE+ + ++ L F +L +KF + + L + ++
Sbjct: 649 DFPVQTFAIAPTNNVFERFQHYSRDLGK--FFELWDKF-RSPKGTKKAALTEEKALYELI 705
Query: 646 NMLEKVQGLSLEDRFNFCFAPVNIRDP 672
+ E S+ D + F P + R+P
Sbjct: 706 SGTEIEARFSMMDLYGFLHLPFSTREP 732
>gi|389700116|ref|ZP_10185167.1| superfamily II RNA helicase, partial [Leptothrix ochracea L12]
gi|388591261|gb|EIM31519.1| superfamily II RNA helicase, partial [Leptothrix ochracea L12]
Length = 572
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 245/450 (54%), Gaps = 15/450 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR ++RK+ GP NSGKTY A +R +A+ G Y +PLRLLA+E D++ GV C
Sbjct: 85 FERARHLERKVTLLIGPPNSGKTYQAFERLAKAESGAYLAPLRLLALEGRDRLQERGVLC 144
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E V + + T+EMV T E+ DVAVIDE QM+ D RG+AWT+A++ + A
Sbjct: 145 SLRTGEENVPVEGARITSSTIEMVGTREIIDVAVIDEAQMIFDPSRGWAWTQAIVAVPAR 204
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E+ + ++ + + G+ Q +ER + + + + L + GD VVAFS
Sbjct: 205 ELFIIASEYAVETLEGLLGLCGESCTIQRFERKQAVQLLPAPV--PLNALHKGDAVVAFS 262
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RR++ ++ I H H VIYGALPPE RR++A F VLVA+DA+GMGLNL
Sbjct: 263 RRDVLMLRDQISAH-GHSVAVIYGALPPEVRRREAERFA--QGAVSVLVATDAIGMGLNL 319
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD---LDYLI 582
IRRV+F +++K++G + S+V QIAGRAGR G ++ +G T L + L
Sbjct: 320 PIRRVLFSTMTKFDGQGDRLLTDSEVHQIAGRAGRFG-LHEEGFTGVLKEAEPSAAKTLR 378
Query: 583 ECLKQPFEVVK--KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF-LCRHD 639
+ L Q + K + P ++ + +L ++L+ F + +LD ++F + +
Sbjct: 379 QLLPQTPRAPRQFKAPVAPNGWHIDTISARLGKTGLHEVLKVFMDQLQLDSAHFAVAELE 438
Query: 640 HIKKVANMLEK-VQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMP 698
+ +A L++ L+L RF + APV+ R + L +A S+++ V+ +
Sbjct: 439 QMLTLAEQLDQNAASLNLRQRFTYAQAPVDTRTEAQVQAFLSWARSHAETGMVASPWFLH 498
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ + L +E + +++LWL +F
Sbjct: 499 E--VDEYSRLDRMEQALRACALWLWLDLRF 526
>gi|78778161|ref|YP_394476.1| helicase-like protein [Sulfurimonas denitrificans DSM 1251]
gi|78498701|gb|ABB45241.1| Helicase-like protein [Sulfurimonas denitrificans DSM 1251]
Length = 932
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 157/491 (31%), Positives = 267/491 (54%), Gaps = 21/491 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR M+RK+ H GPTNSGKTY A+Q+ A G Y +PLRLLA+E ++ + G+
Sbjct: 425 FPLARDMRRKLTLHIGPTNSGKTYQAMQKLKSADTGYYLAPLRLLALEGYEDLRDDGISA 484
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+E+ + + HI+ T+EMV+ D DV VIDE+QM+ D RG+AW A++G A
Sbjct: 485 SLITGEEQIVDEDATHISSTIEMVNFDVDVDVCVIDEVQMLDDRDRGWAWANAIIGAPAK 544
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV-VEAKTLLGDLRNVRSGDCVVAF 464
EI + G + + + + G+EL +ER PL+ +++ T ++V + ++AF
Sbjct: 545 EIIMTGSINAKEAIIALAEYLGEELEIIEFERKNPLILLDSPT---HEKDVEANTAIIAF 601
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
SR+++ ++K KH + V+YG L PE RR++A F + E VLVA+DA+ MG+N
Sbjct: 602 SRKDVLKLKQVFSKHFS--VSVVYGNLSPEVRREEARRF--RSGETQVLVATDAIAMGMN 657
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584
L I+ ++F K++G + S++ QI+GRAGR G ++ G L+ D L+
Sbjct: 658 LPIKTILFSKAEKFDGVNDRTLIPSEIHQISGRAGRYG-LHEKGYVGALSGDVLN----I 712
Query: 585 LKQPFEVVKKVGLFPF-----FEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHD 639
+K+ F K PF + ++L L + ++L+ F +N DG + D
Sbjct: 713 IKKNFNKEAKSITIPFRVMANLDHIKLVGTILEEKSLHEILKFFVKNMEFDGPFVATNLD 772
Query: 640 HIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPK 699
+ +++ +++ L L +++ AP+ ++ P + + ++ KN PV+ +
Sbjct: 773 DMLEISTLVD-TYNLDLVTKYHLACAPMTLKSPYIVSAFESYLNTLEKNMPVAYVAPVLS 831
Query: 700 GS-AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
G+ A+ ELL E + +S+YLWLS++F + F A +A A + + + +L +
Sbjct: 832 GAYAQTTDELLRAEDMVKEISLYLWLSYRFS-DFFIDANRARASRGVLNKFIENTLQQSQ 890
Query: 759 WKPESRQAGKP 769
+ R P
Sbjct: 891 LATKCRMCSAP 901
>gi|288960401|ref|YP_003450741.1| hypothetical protein AZL_a06660 [Azospirillum sp. B510]
gi|288912709|dbj|BAI74197.1| hypothetical protein AZL_a06660 [Azospirillum sp. B510]
Length = 758
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 245/461 (53%), Gaps = 34/461 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR M RK+ GPTNSGKT+ A+ R EA+ G Y +PLRLLA+E + + G C
Sbjct: 204 FTTARAMIRKLRLFVGPTNSGKTHAAMDRLAEAESGCYLAPLRLLALEGQEALETRGRPC 263
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL+TG+E+ + P ++ + T+EMV+T ++ VIDEIQM+ D RG+AWT+A+ G+ A
Sbjct: 264 SLVTGEERDVRPGASFTSSTIEMVNTSRIWGACVIDEIQMIGDPDRGWAWTQAVAGVAAP 323
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
EI + G + V+++ G+EL + R PL V+ + + L V++GD ++AFS
Sbjct: 324 EILMTGSADAIPYVKRLADAMGEELEVVEFTRKSPLRVQEERV--KLDEVKTGDALIAFS 381
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R+++ ++ + NH+ VIYGAL PE ++A ++ DVLVA+DA+GMGLNL
Sbjct: 382 RKDVMALRHDLLGR-NHNVAVIYGALSPEV--RRAEARRFREGTADVLVATDAIGMGLNL 438
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+ RVV + KY+G + + S+++QI GRAGR G ++ +G L+ + ++ + L
Sbjct: 439 PVARVVLSTTRKYDGREERELTASEIRQIGGRAGRFG-MHEEGRVAVLDGESINPVRRAL 497
Query: 586 KQPFEVVK--KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKK 643
P + + + P VE A +L + ++L G+ L R + +
Sbjct: 498 TSPPVPPEDPRSWISPNLSHVEAIAQELDTDSLAKVLRTAGQE--------LLRANQTFR 549
Query: 644 VANMLEKVQGLSLEDRFNFCFA--------PVNIRDPKAMYHLLRFASSYSKNAPVSIAM 695
+ ++ +++Q + DR A P++ RD + LR ++ N I
Sbjct: 550 MTDLEQRIQAAAAVDRAKLPLAQRDMLARCPIDTRD----QNNLRLLGGWAVNQGRGIPN 605
Query: 696 GMP------KGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
P + S D EL E + L+ Y WL+++F +
Sbjct: 606 AAPDAAERFRHSVGTDVELEKAERAVKELTAYAWLAYRFPD 646
>gi|433445404|ref|ZP_20409812.1| helicase [Anoxybacillus flavithermus TNO-09.006]
gi|432001102|gb|ELK21986.1| helicase [Anoxybacillus flavithermus TNO-09.006]
Length = 893
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/431 (33%), Positives = 238/431 (55%), Gaps = 28/431 (6%)
Query: 289 ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLL 348
A + +K + H GPTNSGKTY+++QR ++AK G+Y +PLRLLA+E F+++ + G+ C+L+
Sbjct: 399 ASSVHKKYVVHVGPTNSGKTYDSMQRLLQAKTGMYLAPLRLLALEKFEEMCSHGIACALI 458
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
TG+E+K V S HI+ TVE V+ +E ++V VIDE Q+++D RG AW +A++G A EIH
Sbjct: 459 TGEERKNVHGSTHISATVESVNVNEEFEVVVIDECQLLADETRGAAWVKAIIGAKAKEIH 518
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L P + +++ + + + ++R PL+ E K +++ GD ++ FS++
Sbjct: 519 LVVAPHAVGLLQTLLTYHQFDFEVIEHKRTTPLIWEEKD-FSFPNDLQKGDALIVFSKKN 577
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
+ V ++ K ++ V+YG++PPETRR+Q F + D+L+A+DA+GMG+NL IR
Sbjct: 578 VLHVAASLVKR-GYNVSVLYGSMPPETRRKQVRQF--RKGLTDILIATDAIGMGMNLPIR 634
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIECLKQ 587
RV+F K++G + + +V+QIAGRAGR+G IY +G + N + L+E
Sbjct: 635 RVIFMESKKFDGKAVRTLKAEEVQQIAGRAGRKG-IYEEGFVCAMVNRKKIKKLLEAPVA 693
Query: 588 PFEV------VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHI 641
P E ++ + FP +E +LF S F +N + Y +
Sbjct: 694 PIEYSFLPISIESLKKFP-YESFDLFKRAWS----------FYQNELKETPYRVREISEW 742
Query: 642 KKVANMLEKVQG-----LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
++ +LEK L L + +FCF P +I + K L Y VS+
Sbjct: 743 ERKMFVLEKALKKMKIELPLWKKLSFCFVPFSIEETKITDCWLTMIREYLTEGKVSLPPI 802
Query: 697 MPKGSAKNDAE 707
+ A ++ E
Sbjct: 803 LTSVDAIDELE 813
>gi|427400048|ref|ZP_18891286.1| hypothetical protein HMPREF9710_00882 [Massilia timonae CCUG 45783]
gi|425720788|gb|EKU83703.1| hypothetical protein HMPREF9710_00882 [Massilia timonae CCUG 45783]
Length = 671
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 255/493 (51%), Gaps = 18/493 (3%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
ES +L + F A M+RK I GPTNSGKT+ A++ +A G+Y +PLRLLA+E
Sbjct: 163 ESINLAEYPRSFEVASRMQRKFIALLGPTNSGKTHRAMEALAKAGSGVYLAPLRLLALEN 222
Query: 335 FDKVNAL-----GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
++++ A + SL+TG+E++L + H+A TVEM+ T +VAVIDEIQM++D
Sbjct: 223 YERLQAARPHGEPIKVSLITGEERRLEEGATHVASTVEMLDTKTPVEVAVIDEIQMLADR 282
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWT A++G A+ ++L G P + + L +R PL +E + +
Sbjct: 283 DRGAAWTTAVVGAPANVVYLVGAPEARRAIEALAERLEVPLEVHVLKRMGPLSMEPSS-V 341
Query: 450 GDLRNVRSGDCVVAFSRREIFEVK-MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
L N+R GD V+ FSRRE+ + M EK + +YG L PE RR QA F ++
Sbjct: 342 RKLSNLRRGDAVICFSRREVLMWRDMITEKGLS--VATVYGNLSPEVRRAQAERF--REG 397
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG 568
+ D++V +DA+ MGLN+ I R+V + KYNG + +P + KQIAGRAGR G ++ +G
Sbjct: 398 QADIVVGTDALAMGLNMPIARIVMTTTVKYNGYEEEEIPAALAKQIAGRAGRYG-VHEEG 456
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVG--LFPFFEQVELFAGQLSNYTFCQLLEKFGEN 626
+ D + +K+ V G + P EQ+ A + +LL++F N
Sbjct: 457 FVAGYDDDTHQVMRALMKEKIPPVAATGFAVAPSLEQLHRIAAVTGETSLVKLLKRFVHN 516
Query: 627 CRLDGSYFLCR-HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
+ +F R + + A L+ + LS+ ++F P++ R P +A S
Sbjct: 517 IDVPDGFFYPRITEEQNERAEWLDTLP-LSVAEKFMLSLVPISSRVPVLQSAWEHWALSL 575
Query: 686 SKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATD 745
+K V + P L ++E +V S Y WL ++ + E FP + A+ +A +
Sbjct: 576 AKKKVVKLQPN-PNPQHLFYMNLQEVEDTCRVYSAYAWLGYR-EPEYFPSIELAQELARE 633
Query: 746 IAELLGQSLTNAN 758
+E + L N
Sbjct: 634 ASERVDAMLQQQN 646
>gi|58040193|ref|YP_192157.1| RNA helicase [Gluconobacter oxydans 621H]
gi|58002607|gb|AAW61501.1| Putative RNA helicase [Gluconobacter oxydans 621H]
Length = 833
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 164/487 (33%), Positives = 261/487 (53%), Gaps = 16/487 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK+Y AL A+ G+ +PLRLLA E + + + GV
Sbjct: 306 FRTARALKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFRESLLSRGVPA 365
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +P + H+A TVEM DVA+IDE QM++D RG AWT A++G+ A
Sbjct: 366 SLSTGEERIEMPGARHLAATVEMCPFHNPVDVAIIDEAQMLADPDRGAAWTAAIMGVPAR 425
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +V++I D + E H ER PL +TL L ++ D V+AFS
Sbjct: 426 HVFILGAPDCIPLVKRIAELCDDPVDEIHLERKSPLKA-GETL--HLDELKPSDAVIAFS 482
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ + V+YGAL PE RR +A FN E D+L+A+DA+GMGLNL
Sbjct: 483 RREVLDLRAELMAR-GRRVAVVYGALSPEVRRAEAARFN--SGEADILIATDAIGMGLNL 539
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIEC 584
+IRRVVF +L K++G + + +VKQI GRAGR G + GL L ++ +
Sbjct: 540 SIRRVVFSALRKFDGRQTRDLVSQEVKQIGGRAGRYGK-HESGLVCVLAGAGSPTFVRKM 598
Query: 585 LKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHDH 640
L P E +K++ P + V A ++ + + +L + D +Y L +
Sbjct: 599 LSAPPEEIKELRPLVQPDSDIVRAVAEEIDSDSLYGVLTRIKHAVLRADDPNYRLADMEQ 658
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS--KNAPVSIAMGMP 698
++A LE V+ L L R+ + P++ RD + L+++A+ ++ ++ P +P
Sbjct: 659 ALEIAAALEGVENLDLSTRWTYAMCPIDERD-NGIQRLIQWAADHAAGRSVPPPGTGRLP 717
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
EL E +H+ L + WL+ +F + +P + AE + + + + Q L +
Sbjct: 718 HPEQAGREELERAEKRHKRLVAWRWLALRFP-DAYPARQDAEINTSILNDWIEQVLRTQS 776
Query: 759 WKPESRQ 765
ES++
Sbjct: 777 RMRESQK 783
>gi|332525139|ref|ZP_08401316.1| helicase domain-containing protein [Rubrivivax benzoatilyticus JA2]
gi|332108425|gb|EGJ09649.1| helicase domain-containing protein [Rubrivivax benzoatilyticus JA2]
Length = 752
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 279/507 (55%), Gaps = 39/507 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR +R + + GP NSGKT+ A +R +A+ G Y +PLRLLA+E D++ A GV C
Sbjct: 266 FPKARAQQRTVTLYVGPPNSGKTHAAFERLCQARDGAYLAPLRLLALEGRDRMVARGVAC 325
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SLLTG+E ++ ++ T+EMVST+ +VAV+DE QM+ DA RG+AWT+A++ + A
Sbjct: 326 SLLTGEENVPAEGAHFVSSTIEMVSTNNPVEVAVVDEAQMIFDASRGWAWTQAIVAVPAS 385
Query: 406 E-IHLCGDPSV--LDVVRKICSETGDEL---HEQHYERF-KPLVVEAKTLLGDLRNVRSG 458
E I +C + +V ++++ +C E +QH E +P+ ++A +++G
Sbjct: 386 ELIIICSEYAVPAIEILLGVCGERCTVRRFERKQHVELLPRPVALDA---------LQAG 436
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
D VVAFSRR++ ++ AI + VIYGALPPE RR++A F E +LVA+DA
Sbjct: 437 DAVVAFSRRDVLTLRDAIAAN-GRPVSVIYGALPPEVRRREAERF--ASGESQILVATDA 493
Query: 519 VGMGLNLNIRRVVFYSLSKYN--GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
+GMGLNL IRRV+F +LSK++ GD+++ S+V QIAGRAGR G + +G L+L
Sbjct: 494 IGMGLNLPIRRVLFSTLSKFDGVGDRLL--DESEVHQIAGRAGRFG-FHEEGFAGVLDLA 550
Query: 577 D---LDYLIECLKQPFEVVK--KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDG 631
+ L E L + + + K + P V A +L ++L F + +LD
Sbjct: 551 EPTAARTLKELLHRQPKAPRHFKAPVAPNGWHVRTIAERLQATRLREVLGVFVDRLKLDD 610
Query: 632 SYF-LCRHDHIKKVANMLEKVQG-LSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA 689
++F + D + +A L+ G L L RF + APV+ R+ + L +A ++K
Sbjct: 611 AHFAVAELDAMLALAEQLDHAAGALPLAARFVYAQAPVDSRNEDTVQEYLDWARGHAKGG 670
Query: 690 PVSIAMGMPK--GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIA 747
G P + + L +E + +++LWL +F V+ + ++ A+ ++
Sbjct: 671 ----RAGRPSFLDTVDGWSRLDRIEQALRACTLWLWLDLRFP-GVYGHVEEVHALRAELN 725
Query: 748 ELLGQSLTNANWKPESRQAGK-PKLHQ 773
+ + + L + R+A + P H+
Sbjct: 726 DGIERQLQGKRPLAQMRRARRHPGAHR 752
>gi|414341174|ref|YP_006982695.1| RNA helicase [Gluconobacter oxydans H24]
gi|411026509|gb|AFV99763.1| putative RNA helicase [Gluconobacter oxydans H24]
Length = 815
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 165/487 (33%), Positives = 259/487 (53%), Gaps = 16/487 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK+Y AL A+ G+ +PLRLLA E + + GV
Sbjct: 297 FRTARSLKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFREALLNRGVPA 356
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +P + H+A TVEM + DVA+IDE QM++D RG AWT A++G+ A
Sbjct: 357 SLATGEERIEMPGARHLAATVEMCPFHKPVDVAIIDEAQMLADPDRGAAWTAAIMGVPAR 416
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G + +V++I D + E H ER PL L +L +GD V+AFS
Sbjct: 417 HVFILGAADCIPLVKRIAELCDDPVDEIHLERKSPLKAGGTLHLSEL---TAGDAVIAFS 473
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ + V+YGAL PE RR +A FN+ D D+L+A+DA+GMGLNL
Sbjct: 474 RREVLDMRAELMAR-GRRVAVVYGALSPEVRRAEAARFNNGDA--DILIATDAIGMGLNL 530
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIEC 584
+IRRVVF +L K++G + + +VKQI GRAGR G + +GL L ++ +
Sbjct: 531 SIRRVVFSALRKFDGRQTRDLISQEVKQIGGRAGRFGK-HEEGLVCVLAESGSPTFVRQM 589
Query: 585 LKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHDH 640
L P E V ++ P + V A ++ + + +L + D +Y L +
Sbjct: 590 LAAPPEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTRIKRAVLRPDDPNYRLADMEQ 649
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG--MP 698
++A LE V+GL L R+ + P++ RD + L+ +A+ ++ PV +P
Sbjct: 650 SLEIAAALEGVEGLDLTARWTYAMCPIDERD-NGIQRLVSWAADHAAGRPVPPPGTGRLP 708
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
EL E +H+ L + WL+ +F + +P + AE + + + + Q L +
Sbjct: 709 HPEQAGREELERAEKRHKRLVAWRWLALRFP-DAYPAQQNAEINTSILNDWIEQVLRTQS 767
Query: 759 WKPESRQ 765
ES++
Sbjct: 768 RMRESQK 774
>gi|82540244|ref|XP_724456.1| helicase [Plasmodium yoelii yoelii 17XNL]
gi|23479098|gb|EAA16021.1| Helicase conserved C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 963
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 211/386 (54%), Gaps = 44/386 (11%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L IF F + + + + + D T+ + + RK+ + GPTNSGKT+
Sbjct: 193 LLNIFQNFIKRNYHKQWIFYEHIKKLCDFTEINEIRKKKNNLNRKLYLYVGPTNSGKTHE 252
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
A +F+++K G+YCSPLRLL E+ K+ L +LLTGQE + H CT+EM
Sbjct: 253 AFNKFIDSKNGLYCSPLRLLTWEIHKKLLNLKKNANLLTGQEIIKKANNTHTVCTIEMTP 312
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
+E YD A+IDEIQM++++ RGYAWT L+ L +EI+LCG ++++++++ D++
Sbjct: 313 LNEKYDCAIIDEIQMINNSIRGYAWTHVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQV 372
Query: 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490
+ ++R L +E + L +V++GDC+++FSR I +K +EK N VIYG
Sbjct: 373 IIKRFKRLNKLKLEEN--VQALDDVKTGDCIISFSRNNIMLLKTKLEK-LNKRVFVIYGT 429
Query: 491 LPPETRRQQANLF-------------------NDQDN-----------------EFDVLV 514
LPPE++++Q LF ND++N + VLV
Sbjct: 430 LPPESKKKQIELFNYYCKQTKNDCDNIKLKKNNDEENIKNEIYHIENYNHGNQKKETVLV 489
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR----RGSIYPDGLT 570
A+D +GMGLN+ IRR++FYSL KY+GD I + S++ QIAGRAGR DG
Sbjct: 490 ATDVIGMGLNIKIRRIIFYSLKKYDGDIIRYLNVSEILQIAGRAGRFDKNDSENSSDGFV 549
Query: 571 TTLNLDDLDYLIECLKQPFEVVKKVG 596
T +N +D++ L K V K +G
Sbjct: 550 TCVNFEDMNILKNIFKNK-NVKKLIG 574
>gi|453329295|dbj|GAC88487.1| RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 815
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 261/487 (53%), Gaps = 16/487 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK+Y AL A+ G+ +PLRLLA E + + GV
Sbjct: 297 FRTARSLKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFREALLNRGVPA 356
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +P + H+A TVEM + DVA+IDE QM++D RG AWT A++G+ A
Sbjct: 357 SLATGEERIEMPGARHLAATVEMCPFHKPVDVAIIDEAQMLADPDRGAAWTAAIMGVPAR 416
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G + +V++I D + E H ER PL TL +L + +GD V+AFS
Sbjct: 417 HVFILGAADCIPLVKRIAELCDDPVDEIHLERKSPLKA-GGTL--NLSELTAGDAVIAFS 473
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ + V+YGAL PE RR +A FN+ D D+L+A+DA+GMGLNL
Sbjct: 474 RREVLDMRAELMAR-GRRVAVVYGALSPEVRRAEAARFNNGDA--DILIATDAIGMGLNL 530
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIEC 584
+IRRVVF +L K++G + + +VKQI GRAGR G + +GL L ++ +
Sbjct: 531 SIRRVVFSALRKFDGRQTRDLISQEVKQIGGRAGRFGK-HEEGLVCVLAESGSPTFVRQM 589
Query: 585 LKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHDH 640
L P E V ++ P + V A ++ + + +L + D +Y L +
Sbjct: 590 LAAPPEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTRIKRAVLRPDDPNYRLADMEQ 649
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG--MP 698
++A LE V+GL L R+ + P++ RD + L+ +A+ ++ PV +P
Sbjct: 650 SLEIAAALEGVEGLDLTARWTYAMCPIDERD-NGIQRLVSWAADHAAGRPVPPPGTGRLP 708
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
EL E +H+ L + WL+ +F + +P + AE + + + + Q L +
Sbjct: 709 HPEQAGREELERAEKRHKRLVAWRWLALRFP-DAYPAQQNAEINTSILNDWIEQVLRTQS 767
Query: 759 WKPESRQ 765
ES++
Sbjct: 768 RMRESQK 774
>gi|399886926|ref|ZP_10772803.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium arbusti SL206]
Length = 585
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 196/318 (61%), Gaps = 7/318 (2%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL 341
P + AR + RK H G TN+GKTYNA+ R E KGIY SPLR+LA+E ++++N
Sbjct: 130 PKDEYRDARRITRKFYLHLGETNTGKTYNAMMRLKECNKGIYLSPLRILALENYERLNKE 189
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
GV C+L+TG+E+ +V ++HI CT+E + + Y+VAVIDE+QM+ D RG AWTRA+L
Sbjct: 190 GVKCNLMTGEEEIIVEGADHICCTIEKLDISKYYEVAVIDEVQMIDDDQRGAAWTRAILA 249
Query: 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
L +EIH+CG + ++ I + DE + Y+R PL ++ KT R+V GD +
Sbjct: 250 LNCNEIHVCGALNAKQLLLDIIEDCNDEYKFKEYKRDIPLQMDYKTFA--YRHVEDGDAL 307
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
V FS++ + + + +IYG LP E R++Q F E +L+ +DA+GM
Sbjct: 308 VVFSKKMVLNLAYYF-SSSGIKASIIYGDLPAEVRKKQYKQF--ASGETKILITTDAIGM 364
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581
G+NL I+R+VF + K++G+++ + +VKQIAGRAGR+G IY G T N + DY+
Sbjct: 365 GVNLPIKRIVFMDIKKFDGNEVRYLNSQEVKQIAGRAGRKG-IYDVGYVATYN-NVQDYI 422
Query: 582 IECLKQPFEVVKKVGLFP 599
E L+ +++++ + P
Sbjct: 423 RENLEVEDKILEQAVVGP 440
>gi|163850244|ref|YP_001638287.1| helicase domain-containing protein [Methylobacterium extorquens
PA1]
gi|163661849|gb|ABY29216.1| helicase domain protein [Methylobacterium extorquens PA1]
Length = 714
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 237/466 (50%), Gaps = 50/466 (10%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I++H GPTNSGKTY ALQ A G Y +PLRLLA+E ++ ++ G+
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALQALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 346 SLLTGQE--KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
++TG+E +L P H A T+E DVAVIDEIQM+SD RG+AWT AL G+
Sbjct: 296 GMVTGEEVLGELDP--THTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVP 353
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD---LRNVRSGDC 460
A + +CG L VR+ + L ++ER PLV LL D L V GD
Sbjct: 354 ARTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLV-----LLDDPVPLEKVEPGDA 408
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
VVAFSRR + E + I H IYGAL PE RR +A F + E +VLV +DA+G
Sbjct: 409 VVAFSRRAVHENR-EILVARGHRVATIYGALSPEVRRAEAARF--RSGEANVLVTTDAIG 465
Query: 521 MGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
MGLNL ++R+VF ++ K++G + + S+++QIAGRAGR G D+
Sbjct: 466 MGLNLGPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGH------------QDVG 513
Query: 580 YLIECLKQPFEVVK--------------KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGE 625
Y+ E ++ + + P + A ++ + +++ F
Sbjct: 514 YVAATEPTAVEPIRTALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFAR 573
Query: 626 NCRLDGSYFLCRH-DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
GS F + + ++A ++++ + L +E++F F P+N RD AM L R++
Sbjct: 574 ATFYAGSPFQPSALEEVLEIARIIDRAR-LPIEEKFIFSVCPINRRDEIAMGMLERWSQV 632
Query: 685 YSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+ V P A EL E ++ S YLWL+ +F E
Sbjct: 633 RAAGTTV------PALRASMTGELDYQERTVKLASAYLWLARRFPE 672
>gi|240137314|ref|YP_002961783.1| hypothetical protein MexAM1_META1p0574 [Methylobacterium extorquens
AM1]
gi|418061704|ref|ZP_12699547.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
gi|240007280|gb|ACS38506.1| conserved hypothetical protein with putative ATP-dependent helicase
domain [Methylobacterium extorquens AM1]
gi|373564756|gb|EHP90842.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
Length = 714
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 237/463 (51%), Gaps = 44/463 (9%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I++H GPTNSGKTY ALQ A G Y +PLRLLA+E ++ ++ G+
Sbjct: 236 FAAARRLSRRILFHMGPTNSGKTYAALQALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 346 SLLTGQE--KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
++TG+E +L P H A T+E DVAVIDEIQM+SD RG+AWT AL G+
Sbjct: 296 GMVTGEEVLGELDP--THTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVP 353
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
A + +CG L VR+ + L ++ER PLV+ + + L V GD VVA
Sbjct: 354 ARTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLVLLDEPV--PLEKVEPGDAVVA 411
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSRR + E + I H IYGAL PE RR +A F + E +VLV +DA+GMGL
Sbjct: 412 FSRRAVHENR-EILVARGHRVATIYGALSPEVRRAEAARF--RSGEANVLVTTDAIGMGL 468
Query: 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582
NL ++R+VF ++ K++G + + S+++QIAGRAGR G D+ Y+
Sbjct: 469 NLGPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGH------------QDVGYVA 516
Query: 583 ECLKQPFEVVK--------------KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
E ++ + + P + A ++ + +++ F
Sbjct: 517 ATEPNAVEPIRTALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFARATF 576
Query: 629 LDGSYFLCRH-DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
GS F + + ++A ++++ + L +E++F F P+N RD AM L R++ +
Sbjct: 577 YAGSPFQPSALEEVLEIARIIDRAR-LPIEEKFIFSVCPINRRDEIAMGMLERWSQVRAA 635
Query: 688 NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
V P A EL E ++ S YLWL+ +F E
Sbjct: 636 GTTV------PALRASMTGELDYQERTVKLASAYLWLARRFPE 672
>gi|373859839|ref|ZP_09602561.1| helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450424|gb|EHP23913.1| helicase domain protein [Bacillus sp. 1NLA3E]
Length = 858
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 260/479 (54%), Gaps = 27/479 (5%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK 354
+ + H G TN+GKT+ AL R EAK G+Y +PLRLLA+EVFDK+NA GV CSL TG+E+K
Sbjct: 373 RFVLHIGETNTGKTHQALSRMKEAKSGLYLAPLRLLALEVFDKLNAEGVPCSLKTGEEEK 432
Query: 355 LVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
LV + H +CTVEM + ++V VIDE QM++D RG++W +A+ A E+H+ G +
Sbjct: 433 LVLDATHFSCTVEMFHEKDHFEVIVIDEAQMIADKDRGFSWYKAISKANAKEVHIIGSRN 492
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
+ +++ ++ E+ E++E Y R PL VE K +L + + GD +V FSRR++ E
Sbjct: 493 IKEMLLQLLGESEIEIYE--YSREIPLEVEQKEF--NLVHSKKGDALVCFSRRKVLETAS 548
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
++ +IYG++PPETR++Q F D E +V++DA+GMGLNL IRR+VF
Sbjct: 549 KLQT-KGISVSMIYGSMPPETRKKQIQRF--IDGETTRIVSTDAIGMGLNLPIRRIVFLE 605
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKK 594
K++G + + +VKQIAGRAGR+G +Y G + D+ + L Q E V
Sbjct: 606 NEKFDGTRRRRLTSQEVKQIAGRAGRKG-LYNIGKVAFTS--DIIKMKNLLHQEDETVLI 662
Query: 595 VGLFP---FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKV 651
+ P FE+ + + L TF L +KF + + L + ++ E
Sbjct: 663 FAIAPTNGVFERFQKYYHDLG--TFFDLWDKFN-SPKGTKKASLAEERELYELICHTEIE 719
Query: 652 QGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDL 711
LS+ D + F P + ++ + L+ + + P +P+ K L +L
Sbjct: 720 ARLSMMDLYGFLHLPFSSKELGLKHQWLKTVQALIEGNP------LPEPVIKKRT-LEEL 772
Query: 712 ETKHQVLSMYLWLSHQF--KEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGK 768
E ++ + ++L ++ + E + + E ++ D+ E L + N+K + ++ GK
Sbjct: 773 ELSYKAIGLHLLFLYRLDRRTEALYWERLREEISNDVHEHLKHEV--KNYKSKCKRCGK 829
>gi|357030820|ref|ZP_09092764.1| putative RNA helicase [Gluconobacter morbifer G707]
gi|356415514|gb|EHH69157.1| putative RNA helicase [Gluconobacter morbifer G707]
Length = 812
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 166/496 (33%), Positives = 258/496 (52%), Gaps = 16/496 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR +KR+I GPTNSGK++ AL A+ G+ +PLRLLA E + + GV
Sbjct: 297 FRTARALKRRITLVTGPTNSGKSHTALNALANAESGLALAPLRLLAHEFRESLLTRGVPA 356
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ +P + H+A TVEM DVA+IDE QM++D RG AWT A++G+ A
Sbjct: 357 SLSTGEERIEMPGARHLAATVEMCPFHNPVDVAIIDEAQMLADPDRGAAWTAAIMGVPAR 416
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ + G P + +VR+I D + E H ER PL + L +L + D V+AFS
Sbjct: 417 HVFVLGAPDCIPLVRQIAELCDDPVDEIHLERKSPLKADGVLHLSEL---QPSDAVIAFS 473
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ + V+YGAL PE RR +A FN E D+LVA+DA+GMGLNL
Sbjct: 474 RREVLDLRAELMAR-GRRVAVVYGALSPEVRRAEAARFN--AGEADILVATDAIGMGLNL 530
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIEC 584
+IRR+VF SL K++G + + +VKQI GRAGR G + GL L ++
Sbjct: 531 SIRRIVFSSLRKFDGRQTRDLTSQEVKQIGGRAGRYGK-HEQGLVCVLAEGGSPAFVRRM 589
Query: 585 LKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYFLCRHDH 640
L P E V ++ P + V A ++ + + +L + D +Y L +
Sbjct: 590 LSAPPEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTRIKRAVLRPDDPNYRLADMEQ 649
Query: 641 IKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS--KNAPVSIAMGMP 698
++A LE V+ L L R+ + P++ RD + L+++A+ ++ + P +P
Sbjct: 650 ALEIAAALEGVEDLDLSTRWTYAMCPIDERD-NGIQRLVQWAADHAAGRRVPPPGTGRLP 708
Query: 699 KGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN 758
EL E +H+ L + WL+ +F E +P AE + + + + Q L +
Sbjct: 709 HPEQAGREELERAEKRHKRLVAWRWLALRFP-EAYPARDDAEINTSILNDWIEQVLRTQS 767
Query: 759 WKPESRQAGKPKLHQQ 774
ES++ + Q+
Sbjct: 768 RMRESQKQQRGGFRQK 783
>gi|313681195|ref|YP_004058933.1| helicase domain-containing protein [Sulfuricurvum kujiense DSM
16994]
gi|313154055|gb|ADR32733.1| helicase domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 940
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 151/506 (29%), Positives = 266/506 (52%), Gaps = 13/506 (2%)
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+KR R + + + FP AR ++R++I+H GPTNSGKTY A Q+ +A G Y +P
Sbjct: 406 LKRQRQALLARTVRDFKNLFPLARSLRRRLIFHTGPTNSGKTYTAFQQLKKAGTGYYLAP 465
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LRLLA+E ++ + GV SL+TG+E+ L + HI+ T+EM+S + D VIDE+QM+
Sbjct: 466 LRLLALEGYENLREQGVSASLITGEEQLLDEDATHISSTIEMLSFESEVDCCVIDEVQMI 525
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-VVEA 445
D RG+AW A++G A + + G P+ + + + G+ L +ER PL ++++
Sbjct: 526 DDRDRGWAWANAIIGAPAKTVIMTGSPNAKEAIIALAEYLGEPLEIIEFERKNPLELLKS 585
Query: 446 KTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND 505
T + + V+AF+R +K + K + VIYG L PE RR++A F +
Sbjct: 586 PT---PITAIEPKTAVIAFTRSNALRLKQQLSK--TYRTSVIYGNLSPEVRREEARRFRE 640
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY 565
+ D+LVA+DA+ MGLNL I+ ++F K++G + ++V+QI+GRAGR G +
Sbjct: 641 GET--DILVATDAISMGLNLPIKTLLFSKADKFDGQNQRNLTATEVRQISGRAGRYG-LS 697
Query: 566 PDGLTTTLNLDDLDYLIECLKQPFE-VVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFG 624
G L D L + + E +V + F+ + L + L + +++ F
Sbjct: 698 EKGYVGALTADVLKTISSLFTKAIEPIVLPFNVMANFDHIMLVSNILEEKSLSNIVDFFV 757
Query: 625 ENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASS 684
N + +G + + +++ + ++++ L + ++ AP++ P M R+ +
Sbjct: 758 RNMKFEGPFRAANLESMQEASAIVDRYD-LDMRTKYTLATAPLSTSSPLVMAAFERYVRA 816
Query: 685 YSKNAPVSIAMGMPKG-SAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMA 743
+ P++ G A + EL + E + + +S+YLWLS++ E F A+KA
Sbjct: 817 LEQKKPIAYIPPQRLGLHALSMEELQEAEDRIKEISLYLWLSYRLG-EFFVDAEKARTFR 875
Query: 744 TDIAELLGQSLTNANWKPESRQAGKP 769
++ + SL +++ P + GKP
Sbjct: 876 GELNRFIENSLQQSHFVPRCKTCGKP 901
>gi|156101109|ref|XP_001616248.1| ATP-dependent DEAD box helicase [Plasmodium vivax Sal-1]
gi|148805122|gb|EDL46521.1| ATP-dependent DEAD box helicase, putative [Plasmodium vivax]
Length = 862
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 219/406 (53%), Gaps = 39/406 (9%)
Query: 247 AVKF--LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTN 304
A+K+ L IF +F + + + + + D ++ + RK+ + GPTN
Sbjct: 117 AMKYAKLLAIFQQFIKKNYYKQWIFYEHVRRMCDFSELSELVKKKKKKTRKLHLYVGPTN 176
Query: 305 SGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIAC 364
SGKTY A QR +++ G+YC+PLR+LA E+ K+ L +LLTGQE + H C
Sbjct: 177 SGKTYEAFQRLCKSRNGLYCAPLRILAWEIHKKLIKLNKVTNLLTGQEIIKKKNATHTVC 236
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
TVEM + YD AVIDEIQM++ RG AWT LL L +EI+LCG ++++V+++
Sbjct: 237 TVEMTPLERQYDCAVIDEIQMINHETRGCAWTNVLLNLECEEIYLCGSDQIINLVKRLAD 296
Query: 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHC 484
D+L + +ER L V+ T+ + +++GDCV+ FSR I +K +E+ N
Sbjct: 297 LLHDQLIIKQFERLTKLRVQESTV--EWEELKTGDCVITFSRNSIMLLKKRLERF-NKRV 353
Query: 485 CVIYGALPPETRRQQANLFN----------------------DQDNEFD-VLVASDAVGM 521
V+YG+LPPE +R+Q LFN DN+ + +L+A+D +GM
Sbjct: 354 FVVYGSLPPELKRRQVELFNRCCTGEGGIEKVDETDTAELPPSSDNKKETILIATDVIGM 413
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR--RGSIYP-DGLTTTLNLDDL 578
G+N+NIRR++FYSL K++GDK+ + S+V QIAGRAGR G P G T ++ DL
Sbjct: 414 GVNINIRRIIFYSLQKFDGDKLRHLYASEVLQIAGRAGRYHHGVREPITGYVTCVHAHDL 473
Query: 579 DYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFG 624
+ L+ + V L G L N TF + ++ G
Sbjct: 474 GTIRRILRNENDGV--------LNGTALEDGNLGNSTFTRSCQRVG 511
>gi|319653094|ref|ZP_08007196.1| hypothetical protein HMPREF1013_03811 [Bacillus sp. 2_A_57_CT2]
gi|317395015|gb|EFV75751.1| hypothetical protein HMPREF1013_03811 [Bacillus sp. 2_A_57_CT2]
Length = 858
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 196/330 (59%), Gaps = 9/330 (2%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEK 353
++ + H G TN+GKT++AL+ A+ G+Y +PLRLLA+EV+DK+N G+ CSL TG+E+
Sbjct: 373 KRYVLHIGETNTGKTHHALEGMKSAQSGMYLAPLRLLALEVYDKLNREGIPCSLKTGEEE 432
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413
K V S H++ TVEM + YDV VIDE QM++D RG++W +A+ A+E+H+ G
Sbjct: 433 KAVAGSEHLSSTVEMFYEKDYYDVIVIDEAQMITDKDRGFSWYKAITKANANEVHIIGSR 492
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVK 473
S ++ ++ E EL+E Y R PL VEAK +VR GD ++ FSR+ + E
Sbjct: 493 SAKSMMLQLLGEADIELNE--YSRDIPLEVEAKEF--KFSHVRKGDALICFSRKRVLETA 548
Query: 474 MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFY 533
+++ H +IYGA+PPETR++Q F E V+V++DA+GMGLNL IRR+VF
Sbjct: 549 SRLQQE-GHSVSMIYGAMPPETRKKQVQRFT--KGETSVIVSTDAIGMGLNLPIRRIVFL 605
Query: 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK 593
K++G K + +VKQIAGRAGR+G + T ++ + L+E P
Sbjct: 606 ENDKFDGTKRRTLTSQEVKQIAGRAGRKGLYNIGKVAFTKDIKRMKALLEMEDAPVHSFA 665
Query: 594 KVGLFPFFEQVELFAGQLSNYTFCQLLEKF 623
FE+ + + L +F +L +KF
Sbjct: 666 IAPTNTVFERFQRYYRDLG--SFFELWDKF 693
>gi|218528785|ref|YP_002419601.1| helicase [Methylobacterium extorquens CM4]
gi|218521088|gb|ACK81673.1| helicase domain protein [Methylobacterium extorquens CM4]
Length = 714
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 236/463 (50%), Gaps = 44/463 (9%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I++H GPTNSGKTY ALQ A G Y +PLRLLA+E ++ ++ G+
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALQALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 346 SLLTGQE--KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
++TG+E +L P H A T+E DVAVIDEIQM+SD RG+AWT AL G+
Sbjct: 296 GMVTGEEVLGELDP--THTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVP 353
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
A + +CG L VR+ + L ++ER PLV+ + + L V GD VVA
Sbjct: 354 ARTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLVLLDEPV--PLEKVEPGDAVVA 411
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSRR + E + I H IYGAL PE RR +A F + E +VLV +DA+GMGL
Sbjct: 412 FSRRAVHENR-EILVARGHRVATIYGALSPEVRRAEAARF--RSGEANVLVTTDAIGMGL 468
Query: 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582
NL ++R+VF ++ K++G + + S+++QIAGRAGR G D+ Y+
Sbjct: 469 NLGPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGH------------QDVGYVA 516
Query: 583 ECLKQPFEVVK--------------KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
E ++ + + P + A ++ + +++ F
Sbjct: 517 ATEPTAVEPIRTALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFARATF 576
Query: 629 LDGSYFLCRH-DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
GS F + + ++A +++ + L +E++F F P+N RD AM L R++ +
Sbjct: 577 YAGSPFQPSALEEVLEIARIIDWAR-LPIEEKFIFSVCPINRRDEIAMGMLERWSQVRAA 635
Query: 688 NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
V P A EL E ++ S YLWL+ +F E
Sbjct: 636 GTTV------PALRASVTGELDYQERTVKLASAYLWLARRFPE 672
>gi|445495736|ref|ZP_21462780.1| helicase domain-containing protein [Janthinobacterium sp. HH01]
gi|444791897|gb|ELX13444.1| helicase domain-containing protein [Janthinobacterium sp. HH01]
Length = 659
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 153/500 (30%), Positives = 259/500 (51%), Gaps = 20/500 (4%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
+S +L + F AR +KRK I GPTNSGKT+ A++ +A G+Y +PLRLLA+E
Sbjct: 165 QSINLAEYPASFEVARRIKRKFIALLGPTNSGKTHQAIEALAKAPSGVYLAPLRLLALEN 224
Query: 335 FDKVNALGVY-----CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
++++ + + SL+TG+E++LV + H+A TVEM+ T DVAVIDEIQM++D
Sbjct: 225 YERLQGMEAHGKPLAVSLVTGEERRLVAGATHVASTVEMLDTRTPVDVAVIDEIQMLADR 284
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG AWT A+ G A ++L G P + + + EL +R PL +E T +
Sbjct: 285 DRGSAWTAAVCGAPAHVVYLVGAPEARRAIEVLAARLECELEVHVLKRKGPLSME-PTAV 343
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
L N+R GD V+ FSRRE+ + + + +YG L PE RR QA F +D
Sbjct: 344 RKLSNLRRGDAVICFSRREVLMWRDMVTE-LGLSVATVYGNLSPEVRRAQAQRF--RDGA 400
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569
DV+V +DA+ MGLN+ I R+V + KYNG + +P + +QIAGRAGR G ++ +GL
Sbjct: 401 ADVVVGTDAIAMGLNMPIARIVMTTSVKYNGYEEEEIPAALARQIAGRAGRFG-VHEEGL 459
Query: 570 TTTLNLDDLDYLIECLKQPFEVVKKVG--LFPFFEQVELFAGQLSNYTFCQLLEKFGENC 627
+ + + + + + +K G + P E + + + + +LL++F N
Sbjct: 460 VAGYDNETHNVMRSLMAEKPVPLKTTGFAVAPTLEHLHRISSVTNEHALAKLLKRFVHNI 519
Query: 628 RLDGSYFLCR--HDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY 685
+ +F R D ++ A + L++ ++F P++ + P +A+S
Sbjct: 520 DVPDGFFYPRITEDQFERAAWL--DTLALTVAEKFALSLVPISSKVPSLQRAWEHWATSL 577
Query: 686 SKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATD 745
+ + + + + + L ++E ++ S Y WL+++ + + FP A+ ++
Sbjct: 578 AAKKITHLKL---EQAPLHYLSLQEVEDACRLYSAYAWLAYR-QPDYFPDTALAQQLSRL 633
Query: 746 IAELLGQSLTNANWKPESRQ 765
+E + L + N RQ
Sbjct: 634 ASERVDAMLQDQNSAARKRQ 653
>gi|410994891|gb|AFV96356.1| hypothetical protein B649_00210 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 942
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 155/515 (30%), Positives = 270/515 (52%), Gaps = 31/515 (6%)
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+KR R + + + FP AR ++R++I++ GPTNSGKTY A Q+ +A G Y +P
Sbjct: 406 LKRQRQALLARTVRDFKNLFPLARSLRRRLIFNTGPTNSGKTYTAFQQLKKAGTGYYLAP 465
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LRLLA+E ++ + GV SL+TG+E+ L + HI+ T+EM+S + D VIDE+QM+
Sbjct: 466 LRLLALEGYETLRDEGVSASLITGEEQLLDEDATHISSTIEMLSFEVEVDCCVIDEVQMI 525
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-VVEA 445
D RG+AW A++G A + + G P+ + V + G+ L +ER PL ++++
Sbjct: 526 DDRDRGWAWANAIIGAPAKTVIMTGSPNAREAVIALAEYLGEPLEIVEFERKNPLELLKS 585
Query: 446 KTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND 505
T + + V+AF+R +K + K + VIYG L PE RR++A F +
Sbjct: 586 AT---PIDAIEPKTAVIAFTRSNALRLKQQLSK--TYRTSVIYGNLSPEVRREEARRFRE 640
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY 565
+ D+LVA+DA+ MGLNL I+ ++F K++G + ++V+QI+GRAGR G +
Sbjct: 641 GET--DILVATDAISMGLNLPIKTLLFSKADKFDGQNQRNLTSTEVRQISGRAGRYG-LS 697
Query: 566 PDGLTTTLNLDDLDYL-------IECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ 618
G L D L + IE + PF V+ F+ + L + L +
Sbjct: 698 EKGYVGALTNDVLKTVSTLFTKNIEPITLPFNVMAN------FDHIMLVSNILEERSLSN 751
Query: 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHL 678
+++ F +N + +G + + +++ + ++++ L + ++ AP++ P M
Sbjct: 752 IVDFFVQNMKFEGPFRAANLESMQEASAIVDRYD-LDMRTKYTLATAPLSTSSPLVMAAF 810
Query: 679 LRFASSYSKNAPVSIAMGMPKGSAKNDA----ELLDLETKHQVLSMYLWLSHQFKEEVFP 734
R+ + + P++ +P N A EL + E + + +S+YLWLS++ E F
Sbjct: 811 ERYVRALEQKKPIAY---IPPQRLGNHALSMEELQEAEDRIKEISLYLWLSYRMG-EFFV 866
Query: 735 YAKKAEAMATDIAELLGQSLTNANWKPESRQAGKP 769
A+KA ++ + SL +++ P + GKP
Sbjct: 867 DAEKARTFRGELNRFIENSLQQSHFVPRCKTCGKP 901
>gi|340777408|ref|ZP_08697351.1| RNA helicase [Acetobacter aceti NBRC 14818]
Length = 812
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 248/464 (53%), Gaps = 19/464 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I GPTNSGK++ AL +A+ G+ +PLRLLA E + + A GV
Sbjct: 332 FRTARALDRRITLVTGPTNSGKSHTALDALAKAESGLALAPLRLLAHEFREALAARGVEA 391
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
SL TG+E+ + S H+A TVEM DVA+IDE QM+ D RG AWT A++G A
Sbjct: 392 SLSTGEERIVAHGSKHLAATVEMCPFFNPVDVAIIDEAQMLFDPDRGAAWTAAIMGAPAR 451
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+++ G P + +VR+I GD + E +R PL +A + L ++SGD ++AFS
Sbjct: 452 HLYILGAPECIPMVRRIAELCGDPIDEISLQRKSPL--KAASAPVRLNELKSGDALIAFS 509
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RRE+ +++ A+ + V+YGAL PE RR +A FN D+L+A+DA+GMGLNL
Sbjct: 510 RREVLDLRAALMER-GRRVAVVYGALSPEVRRAEAQRFN--SGAADILIATDAIGMGLNL 566
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD-----LDY 580
+IRRVVF +L K++G + + +VKQI GRAGR G + +G+ L D+
Sbjct: 567 SIRRVVFAALRKFDGRQTRDLTIQEVKQIGGRAGRYGK-HEEGIVAVLADAGSPRFIRDH 625
Query: 581 LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC--RLDGSYFLCRH 638
L P E+ V P + V A ++ + + +L + D +Y L
Sbjct: 626 LNADPVPPDELRPLVQ--PDADIVRAIATEIGSDSLYGVLARIRRAVLRHDDPNYRLSDM 683
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNA--PVSIAMG 696
+ +A+ LE V+GL L R+ + PV+ RD + L+ +A+ ++ A P
Sbjct: 684 EQPFAIASALEGVEGLDLTQRWTYAMCPVDDRD-NGISRLVGWAADHAAGARIPPPGTGR 742
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAE 740
+P EL E +H+ L + WL+ +F E +P + AE
Sbjct: 743 LPAPDRAGREELERAEKRHKRLVAWRWLALRFP-ETYPDLESAE 785
>gi|297538677|ref|YP_003674446.1| helicase domain-containing protein [Methylotenera versatilis 301]
gi|297258024|gb|ADI29869.1| helicase domain protein [Methylotenera versatilis 301]
Length = 503
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 256/476 (53%), Gaps = 34/476 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR++ R ++ GPTNSGKTY AL +A+ G+Y +PLRLLAME+ D++ A GV C
Sbjct: 9 FTQARLLNRHHHFYLGPTNSGKTYQALIALEKAQSGVYLAPLRLLAMEIRDRLVAAGVPC 68
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L+TG+E+ L+ + H A T+EM++ + +VA+IDEIQM+ D RG AWT AL+G+ A
Sbjct: 69 NLITGEERVLMAGAQHTASTIEMMNPSKTVEVAIIDEIQMLQDGDRGSAWTTALVGVPAS 128
Query: 406 EIHLCGDPSVL-DVVRKICSETGDELHEQHY-ERFKPLVVEAKTLLGDLRN-------VR 456
++ +CG +V V I E DE +E Y R PLV+E +++ G + ++
Sbjct: 129 QVFICGSTAVTAPCVAAI--EAMDETYEITYLARKTPLVLEDESICGKHYSRQKLKPKLQ 186
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
GD ++AFSR+++ A + IYGAL PE RR ++ F + D+LVA+
Sbjct: 187 KGDAIIAFSRKDVLTFS-ARFRQWGFTVASIYGALSPEVRRTESERFC--TGKADILVAT 243
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
DA+GMGLNL IRRV+F ++ K++G + ++V+QIAGRAGR G IY G + D
Sbjct: 244 DAIGMGLNLPIRRVIFSNIHKFDGVASRHLNSTEVRQIAGRAGRFG-IYDTGYISVFEND 302
Query: 577 DLDYLIECLKQ-PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF- 634
+L ++ L + K+ + F Q+ + +L ++L + R+ F
Sbjct: 303 ELIHIEHMLSTDDTSDLTKLPVSISFSQIGEISHKLHTRKIAEVLIYHQQRTRIHSELFA 362
Query: 635 -LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDP-KAMYHLLRFAS---SYSKNA 689
I + + E +SL+D+F F AP+++ + Y+LL S S ++
Sbjct: 363 QTSLSTQIAQAILVDEHAPTMSLKDKFIFVCAPISLDVAFEKDYYLLCLKSVVDSKMRHL 422
Query: 690 PVSIA-MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFK------EEVFPYAKK 738
P +G AELL LS+Y WLS +F +EV PY ++
Sbjct: 423 PAPPNWLGSESPKHLEAAELLS-----HNLSLYAWLSFKFPNTFVDGDEVRPYRQR 473
>gi|68075671|ref|XP_679755.1| ATP-dependent DEAD box helicase [Plasmodium berghei strain ANKA]
gi|56500573|emb|CAH94648.1| ATP-dependent DEAD box helicase, putative [Plasmodium berghei]
Length = 905
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 207/381 (54%), Gaps = 49/381 (12%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L IF F + + + + + D T+ + + RK+ + GPTNSGKT+
Sbjct: 146 LLNIFQNFIKRNYHKQWIFYEHIKKLCDFTEINEIRKKKNNLNRKLYLYVGPTNSGKTHE 205
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
A +F+++K G+YCSPLRLL E+ K+ L +LLTGQE + H CT+EM
Sbjct: 206 AFNKFIDSKNGLYCSPLRLLTWEIHKKLLNLKKNTNLLTGQEIIKKANNTHTVCTIEMTP 265
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
+E YD A+IDEIQM++++ RGYAWT L+ L +EI+LCG ++++++++ D++
Sbjct: 266 LNEKYDCAIIDEIQMINNSIRGYAWTNVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQV 325
Query: 431 HEQHYERFKPLVVEAKTL-LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYG 489
+ ++R L +E LGD V++GDC+++FSR I +K +EK VIYG
Sbjct: 326 IIKRFKRLNKLKLEENVQPLGD---VKTGDCIISFSRNNIMLLKKKLEKLN-KRVFVIYG 381
Query: 490 ALPPETRRQQANLF--------NDQDN----------------------------EFDVL 513
LPPE++++Q LF ND DN + VL
Sbjct: 382 TLPPESKKKQIELFNYYCKQIKNDCDNIKLERNNDEQNIKNEIHRAENSNHENHKKETVL 441
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR----RGSIYPDGL 569
VA+D +GMGLN+ IRR++FYSL KY+GD I + S++ QIAGRAGR DG
Sbjct: 442 VATDVIGMGLNIKIRRIIFYSLKKYDGDIIRYLNVSEILQIAGRAGRFDENDSGNSSDGF 501
Query: 570 TTTLNLDDLDYLIECLKQPFE 590
T +N +D I+ LK FE
Sbjct: 502 VTCVNFED----IKILKNIFE 518
>gi|221057864|ref|XP_002261440.1| ATP dependent DEAD-box helicase [Plasmodium knowlesi strain H]
gi|194247445|emb|CAQ40845.1| ATP dependent DEAD-box helicase, putative [Plasmodium knowlesi
strain H]
Length = 939
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 181/313 (57%), Gaps = 31/313 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEK 353
RK+ + GPTNSGKTY A Q ++ G+YC+PLR+LA E+ K+ L +LLTGQE
Sbjct: 225 RKLHLYVGPTNSGKTYEAFQSLCKSSNGLYCAPLRILAWEIHKKLIKLNKVTNLLTGQEI 284
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413
+ H CTVEM D+ YD V+DEIQM++ RG AWT LL L +EI+LCG
Sbjct: 285 IKEKNATHTVCTVEMTPLDKQYDCVVVDEIQMINHDTRGCAWTNVLLNLECEEIYLCGSD 344
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVK 473
+++ +++K+ DEL + +ER L V+ T+ + +++GDCV+ FSR I +K
Sbjct: 345 NIISLMKKLADLLEDELTIKQFERLGKLHVQENTV--EWEKLKTGDCVITFSRNSIMMLK 402
Query: 474 MAIEKHTNHHCCVIYGALPPETRRQQANLF------------------------NDQDNE 509
+E+ N VIYG+LPPE +R Q LF ND+ E
Sbjct: 403 NRLER-LNKRVFVIYGSLPPELKRSQVELFNRCCAQQEKIEQVDDIPKAEVPFSNDKKKE 461
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYP 566
+L+A+D +GMG+N+NIRR++FYSL K++GDK+ + S+V QIAGRAGR G
Sbjct: 462 -TILIATDVIGMGVNINIRRIIFYSLQKFDGDKLRYLYASEVLQIAGRAGRFHHNGGEPI 520
Query: 567 DGLTTTLNLDDLD 579
G T + DL+
Sbjct: 521 TGYVTCFHAHDLN 533
>gi|254559493|ref|YP_003066588.1| hypothetical protein METDI0942 [Methylobacterium extorquens DM4]
gi|254266771|emb|CAX22570.1| conserved hypothetical protein; putative ATP-dependent helicase
domain [Methylobacterium extorquens DM4]
Length = 714
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 236/463 (50%), Gaps = 44/463 (9%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R+I++H GPTNSGKTY AL A G Y +PLRLLA+E ++ ++ G+
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALLALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 346 SLLTGQE--KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
++TG+E +L P H A T+E DVAVIDEIQM+SD RG+AWT AL G+
Sbjct: 296 GMVTGEEVLGELDP--THTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVP 353
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
A + +CG L VR+ + L ++ER PLV+ + + L V GD VVA
Sbjct: 354 ARTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLVLLDEPV--PLEKVEPGDAVVA 411
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSRR + E + I H IYGAL PE RR +A F + E +VLV +DA+GMGL
Sbjct: 412 FSRRAVHENR-EILVARGHRVATIYGALSPEVRRAEAARF--RSGEANVLVTTDAIGMGL 468
Query: 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582
NL ++R+VF ++ K++G + + S+++QIAGRAGR G D+ Y+
Sbjct: 469 NLGPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGH------------QDVGYVA 516
Query: 583 ECLKQPFEVVK--------------KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
E ++ + + P + A ++ + +++ F
Sbjct: 517 ATEPTAVEPIRTALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFARATF 576
Query: 629 LDGSYFLCRH-DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
GS F + + ++A ++++ + L +E++F F P+N RD AM L R++ +
Sbjct: 577 YAGSPFQPSALEEVLEIARIIDRAR-LPIEEKFIFSVCPINRRDEIAMGMLERWSQVRAA 635
Query: 688 NAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
V P A EL E ++ S YLWL+ +F E
Sbjct: 636 GTTV------PALRASVTGELDYQERTVKLASAYLWLARRFPE 672
>gi|46203070|ref|ZP_00052136.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 465
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 218/434 (50%), Gaps = 16/434 (3%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN 360
GPTNSGKTY ALQ A G Y +PLRLLA+E ++ + G+ ++TG+E P
Sbjct: 2 GPTNSGKTYAALQILTAASTGAYLAPLRLLALENYEALRERGLRAGMVTGEEVLGEPDPT 61
Query: 361 HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVR 420
H A T+E DVAVIDEIQM+SD RG+AWT AL G+ A + +CG L VR
Sbjct: 62 HTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAKTVIVCGSDDALSSVR 121
Query: 421 KICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHT 480
+ + L +ER PLV+ + + L V GD VVAFSRR + E + I
Sbjct: 122 RAAEAANESLEVITFERKSPLVLLDEAV--PLEKVEPGDAVVAFSRRAVHENR-EILVAR 178
Query: 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539
H IYGAL PE RR +A F + E +VLV +DA+GMGLNL ++R+VF ++ K++
Sbjct: 179 GHRVATIYGALSPEVRRAEAARF--RSGEANVLVTTDAIGMGLNLGPLKRIVFSAVRKWD 236
Query: 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF- 598
G + S+++QIAGRAGR G + T + P +
Sbjct: 237 GVAERALTNSEIRQIAGRAGRYGHHEVGYVAATEETAIEPIRVALAGAPTAPAADTRFYV 296
Query: 599 -PFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH-DHIKKVANMLEKVQGLSL 656
P + + ++ + +++ F GS F + + +A +++ + L +
Sbjct: 297 RPDLTAIRSVSEEMRTNSLYEVMTHFARATFYAGSPFQPSALEEVLDIARTIDRAR-LPI 355
Query: 657 EDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQ 716
E++F F P+N RD AM L R++ + + A V P A EL E +
Sbjct: 356 EEKFAFSVCPINRRDEIAMGMLERWSQARAAGATV------PALRASLAGELDYQERTVK 409
Query: 717 VLSMYLWLSHQFKE 730
+ S YLWLS +F +
Sbjct: 410 LASAYLWLSRRFPD 423
>gi|238922272|ref|YP_002935786.1| adenosinetriphosphatase [Eubacterium eligens ATCC 27750]
gi|238873944|gb|ACR73652.1| adenosinetriphosphatase [Eubacterium eligens ATCC 27750]
Length = 543
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 160/508 (31%), Positives = 269/508 (52%), Gaps = 23/508 (4%)
Query: 266 EIKRFRAMIES--ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIY 323
E+K A++ES D+T+ +P AR +KR I H G TN+GKT++AL+ F A G+Y
Sbjct: 23 ELKIKTALMESIPEDITQ---LYPEARNIKRHFILHIGETNTGKTHDALEDFYNAGSGMY 79
Query: 324 CSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEI 383
+PLRLLA+E+ + A G+ CSL TG+EK + + H++CTVE + +DV VIDE
Sbjct: 80 LAPLRLLALEIQEMSLARGINCSLTTGEEKDIRDGAKHLSCTVEKMDMSRHFDVCVIDEA 139
Query: 384 QMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVV 443
QM++D+ RG+AWT A+LG+ AD +H+C P+ + +V+ + GD + ++R L+V
Sbjct: 140 QMVADSDRGWAWTEAILGVNADVVHVCMSPNAIHIVKMLIKMCGDTYTDIRHKRNSRLIV 199
Query: 444 EAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLF 503
E + ++R GD +V+FSRR++ + ++K + VIYG+LP R+ + F
Sbjct: 200 EDHDFIFP-DDIRDGDALVSFSRRKVLMLATLLKKE-GYKVSVIYGSLPYSVRKAEVARF 257
Query: 504 NDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563
+ E ++V +DA+GMG+NL IRR++F K++G + S+VKQIAGRAGR+G
Sbjct: 258 --LNGESRIVVCTDAIGMGVNLPIRRIIFTESKKFDGKSKRFLNMSEVKQIAGRAGRKG- 314
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKF 623
+Y G + ++D D + E L +E + + P + +++ LS F L+
Sbjct: 315 MYDQGYVNS--IEDRDQIGELLHGRYEQITSCVIQPPRKVLDM-PYSLSE-IFKIWLKTI 370
Query: 624 GENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF--APVNIRDPKAMYHLLRF 681
+ C + + + K+A +EK G + + P + + K Y
Sbjct: 371 EKKC-----FSVADLKNRIKLAEYIEKKHGEKINKDLEYSLINIPFDENNEKLKYLWQDL 425
Query: 682 ASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVL-SMYLWLSHQFKEEVFPYAKKAE 740
+ PVS M + D E + L+ Q+ M L S+ + Y ++
Sbjct: 426 VDMTADGEPVS-RMWYYVDTESEDIEAMKLDDLEQLYKKMDLLNSYCNALNISEYDERIR 484
Query: 741 AMATDIAELLGQSLTNANWKPESRQAGK 768
+ +I+E + + LTN + + ++ GK
Sbjct: 485 MLKEEISERIVRELTNGEFFNKCKRCGK 512
>gi|389691612|ref|ZP_10180406.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388588595|gb|EIM28885.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 808
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 249/458 (54%), Gaps = 35/458 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
FP AR + R+ ++ GPTNSGKT+ AL+ EA+ SPLRLLA+E +++++ G
Sbjct: 297 FPVARSLDRRFLFLAGPTNSGKTHEALRLAGEAETAEILSPLRLLALEHYERLSGEGFAA 356
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
++TG+E+ L + HIA T+E + + DV VIDE+QM+ D RG+AWT+A++G A
Sbjct: 357 GMITGEERVLPEGATHIARTIETLDLHRVVDVCVIDEVQMLGDPSRGWAWTQAMVGAPAK 416
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ L G P + +V + + TG+ L + +R L VE + +L + GD VVAF+
Sbjct: 417 LVVLTGAPEAIPLVEHLLAMTGEPLEVKILKRKGKLRVEG--VPANLNKLTRGDAVVAFT 474
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RR + +++ + + +YGAL PE RR +A F ++ E ++LVA+DA+GMGLN+
Sbjct: 475 RRAVHDLRTRL-VASGRTVATVYGALGPEVRRAEAARF--RNGEAEILVATDAIGMGLNI 531
Query: 526 N-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584
+RRVVF +L K++G + + ++KQIAGRAGR G + +GL T L +E
Sbjct: 532 GPLRRVVFSTLRKFDGVRERQLSAMEIKQIAGRAGRFGH-HDEGLVTALPEAGAYAQVES 590
Query: 585 LKQ------PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ + ++ K + P E V LS Q ++ G R + H
Sbjct: 591 VVRNALNGDAAKLRGKAYVRPNQETV------LSASEVLQ-TDRLGRVLRHLYDTLVAGH 643
Query: 639 --------DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP 690
D + ++A++L+ V + + DR ++ APV+ R+ A+ L+ +A ++++
Sbjct: 644 PDLRMADMDEMIELASLLDTVD-MPILDRLSYAMAPVDGREQLAVELLIDWARQHARDGR 702
Query: 691 VSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
V P D LL LE + ++ + +LWL+ ++
Sbjct: 703 VR----APDFGINTD--LLKLEARVKIATSWLWLAQRY 734
>gi|390366013|ref|XP_001200039.2| PREDICTED: uncharacterized protein LOC763911 [Strongylocentrotus
purpuratus]
Length = 1104
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 146/424 (34%), Positives = 216/424 (50%), Gaps = 70/424 (16%)
Query: 373 EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE 432
E+ VAVIDEIQM+ D RG+AWTRA
Sbjct: 120 EVIQVAVIDEIQMLRDPSRGWAWTRA---------------------------------- 145
Query: 433 QHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALP 492
LL +L NV+ GDC+VAFS+ +++ + + C VIYG+LP
Sbjct: 146 ---------------LLDNLENVKPGDCIVAFSKNDLYSISRQLFS-MGKECAVIYGSLP 189
Query: 493 PETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK----YNGDKIIP-VP 547
P + QA FND D+ +LVA+DA+GMGLNL+I+RV+F SL + G+K + +
Sbjct: 190 PGAKLSQAAKFNDPDDPCKILVATDAIGMGLNLSIKRVIFKSLIRPYINEKGEKEMHRLT 249
Query: 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607
SQ QIAGRAGR + + +G TT + DDL L E L P E ++ GL P EQ+ELF
Sbjct: 250 TSQALQIAGRAGRFRTQFEEGEATTFHGDDLPLLKEILANPVEKIEAGGLHPTAEQIELF 309
Query: 608 AGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPV 667
A L + T L+E F ++ +YF+C D K +A+M++ V L L R+ FC AP+
Sbjct: 310 AYHLPDATLSNLIEIFINLSIVEKNYFVCNVDDFKFLADMIQHVP-LHLRARYVFCCAPI 368
Query: 668 NIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYL 722
N + P L+FA YS+N P++ ++G P KN +L+ LE H V+ +YL
Sbjct: 369 NRKLPFICTMFLKFARQYSRNQPITFDWFCRSVGWPLAVPKNIRDLMHLEAVHDVMDLYL 428
Query: 723 WLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNAN---WKPESRQAG-----KPKLHQQ 774
WLS++F ++FP + + ++ ++ + N E+R G P + Q+
Sbjct: 429 WLSYRFM-DMFPDTALIQDVQAELDHIIQMGVINITKLIRASETRSNGMTAIPDPDIEQK 487
Query: 775 REDG 778
+ G
Sbjct: 488 KSHG 491
>gi|307719997|ref|YP_003891137.1| helicase domain-containing protein [Sulfurimonas autotrophica DSM
16294]
gi|306978090|gb|ADN08125.1| helicase domain protein [Sulfurimonas autotrophica DSM 16294]
Length = 931
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 158/471 (33%), Positives = 260/471 (55%), Gaps = 20/471 (4%)
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
IK+ R + + + FP AR M+RK++ H GPTNSGKTY A+Q EA G Y +P
Sbjct: 407 IKKQRQELLARTIRDFKNLFPIARSMQRKLVLHIGPTNSGKTYEAMQALKEADTGYYLAP 466
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LRLLA+E ++ + A G+ SL+TG+E+ L + HI+ T+EM++ D DV VIDE+QM+
Sbjct: 467 LRLLALEGYETLKAEGIESSLITGEEQILDDEATHISSTIEMMNYDVDVDVCVIDEVQMI 526
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-VVEA 445
D RG+AW A++G A E+ + G P+V + + + G+EL + +ER PL ++E
Sbjct: 527 DDRDRGWAWANAIIGAPAKEVIMTGSPNVKEAIIALAEYLGEELEIREFERKNPLELLEK 586
Query: 446 KTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND 505
T D V + ++AFSR+++ +K K + V+YG L PE RR++A F +
Sbjct: 587 PTHPKD---VEAATAIIAFSRKDVLRLKQNFSK--DFEVSVVYGNLSPEVRREEARRFRE 641
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY 565
+ + +LVA+DA+ MG+NL I+ V+F K++G + S++ QIAGRAGR G ++
Sbjct: 642 GETQ--ILVATDAIAMGMNLPIKTVLFSKAEKFDGIIQRNLFPSEIHQIAGRAGRYG-LH 698
Query: 566 PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPF-----FEQVELFAGQLSNYTFCQLL 620
+G L+ D L+ +K+ F K PF E ++L + L + ++L
Sbjct: 699 ENGYVGALHADALN----IVKKNFNKRAKEINVPFKVMANLEHIKLVSTILEENSLEEIL 754
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLR 680
F +N DG ++ D + + + +++ L + +++ AP+ ++ + R
Sbjct: 755 RFFIKNMVFDGPFYAASLDDMLEASRIVDSY-DLDIATKYHLACAPLTLKSAYIISAYER 813
Query: 681 FASSYSKNAPVSIAMGMPKGS-AKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+ ++ K PV GS A+ ELL E + +S+YLWLS++F E
Sbjct: 814 YINALEKKEPVYYHAPKLTGSYAQTSEELLRAEDMVKEISLYLWLSYRFNE 864
>gi|403234635|ref|ZP_10913221.1| helicase [Bacillus sp. 10403023]
Length = 828
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 184/295 (62%), Gaps = 9/295 (3%)
Query: 297 IYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356
+ + G TN+GKT+ A+QR EA GIY +PLRLLA+E+++ +N G+ C+L TG+E+K+V
Sbjct: 352 VLYVGETNTGKTFQAIQRMKEATSGIYLAPLRLLALEIYETLNEDGIPCNLKTGEEEKVV 411
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL 416
+NH + TVEM+ + YDV VIDE QM++D RG++W +A+ A E+H+
Sbjct: 412 EGANHSSATVEMLREKDFYDVIVIDEAQMIADKDRGFSWYKAITNANAKEVHIICSFHAK 471
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ ++ + E+HE H R PL VE + L L R GD +V FSRR + E +
Sbjct: 472 WMILQLLGNSNVEVHEYH--RDVPLEVEPQ--LFRLNQTRKGDALVCFSRRRVLETASEL 527
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
++ + +IYG++PPETR++Q FN + E V+VA+DA+GMGLNL IRR+VF
Sbjct: 528 QR-SGRRVSMIYGSMPPETRKKQIQRFN--NGETTVIVATDAIGMGLNLPIRRIVFLEND 584
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-LTTTLNLDDLDYLIECLKQPFE 590
K++G + + +VKQIAGRAGRRG IY G + T ++ + L+E P +
Sbjct: 585 KFDGTRRRLLTSQEVKQIAGRAGRRG-IYDIGKVAFTSDIKTMTRLLEQEDAPLQ 638
>gi|170750803|ref|YP_001757063.1| helicase domain-containing protein [Methylobacterium radiotolerans
JCM 2831]
gi|170657325|gb|ACB26380.1| helicase domain protein [Methylobacterium radiotolerans JCM 2831]
Length = 714
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 226/450 (50%), Gaps = 18/450 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
F AR + R I++H GPTNSGKTY ALQ A+ G Y +PLRLLA+E ++ + G+
Sbjct: 236 FTAARRLNRTILFHMGPTNSGKTYAALQHLTAAETGAYLAPLRLLALENYETLRERGLRA 295
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
++TG+E H A T+E DVAVIDEIQM+SD RG+AWT AL G+ A
Sbjct: 296 GMITGEEVLGEANPTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAR 355
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
+ +CG L VR+ + L + R + L V +GD VVAFS
Sbjct: 356 TVIVCGSDDALSYVRRAAEAADESLEVIPFTRKS--PLLLLEEPVPLEKVEAGDAVVAFS 413
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
RR + E + + H IYGAL PE RR +A F + E +VLV +DA+GMGLNL
Sbjct: 414 RRAVHENREVLVAR-GHRVATIYGALSPEVRRAEAARF--RSGEANVLVTTDAIGMGLNL 470
Query: 526 N-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG--SIYPDGLTTTLNLDDLDYLI 582
++R+VF ++ K++G + S+++QIAGRAGR G + T + + +
Sbjct: 471 GPLKRIVFSAVRKWDGTAERALTHSEIRQIAGRAGRYGHQDVGYVAATDPFAAEPIRTAL 530
Query: 583 ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH-DHI 641
+ + P + A ++ ++ ++L F GS F + +
Sbjct: 531 SGAPTAPAADTRFYVRPDLGAIRSVAEEMRTHSLHEVLTHFARATFYAGSPFQPSALEEV 590
Query: 642 KKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGS 701
+VA +++ + L +E++F F P++ RD AM L R+ + + V G
Sbjct: 591 LEVARTVDRAR-LPIEEKFAFSVCPIDRRDEIAMGLLERWCQARAAGLTVPALRG----- 644
Query: 702 AKNDAELLDLETKH-QVLSMYLWLSHQFKE 730
N A LD + + ++ S YLWLS +F E
Sbjct: 645 --NLAGALDYQERTVKLASAYLWLSRRFPE 672
>gi|295704340|ref|YP_003597415.1| helicase domain-containing protein [Bacillus megaterium DSM 319]
gi|294801999|gb|ADF39065.1| helicase domain protein [Bacillus megaterium DSM 319]
Length = 870
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 171/266 (64%), Gaps = 7/266 (2%)
Query: 297 IYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356
I H G TN+GKTY AL+ +A G Y +PLRLLA+EVF+K+N GV CSL TG+E+K+V
Sbjct: 386 ILHLGDTNTGKTYTALKSLKKAASGNYLAPLRLLALEVFEKLNKDGVPCSLKTGEEEKIV 445
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL 416
+ H+A TVEM S E DV VIDE QM+ D RG++W +A+ A ++H+ G S+
Sbjct: 446 EDAQHMAGTVEMFSELEHGDVTVIDEAQMIQDRDRGFSWYKAITRANAKQVHVIGSLSIR 505
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ ++ E+HE YER PL V+ + + V+ D ++ FSR+++ + +
Sbjct: 506 SMLEEMLDGVISEIHE--YERDIPLKVDLRKF--KIEQVKPADALIVFSRKKVLQTAAKL 561
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
EK H VIYG++PPETRR+Q F ++ E +V+V++DA+GMGLNL IRR+V
Sbjct: 562 EK-DGHKVSVIYGSMPPETRRKQIEQFINR--ETNVIVSTDAIGMGLNLPIRRIVLLENM 618
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRG 562
K++G K + ++KQIAGRAGR+G
Sbjct: 619 KFDGQKRRLLTSQELKQIAGRAGRKG 644
>gi|410460159|ref|ZP_11313842.1| helicase [Bacillus azotoformans LMG 9581]
gi|409927389|gb|EKN64525.1| helicase [Bacillus azotoformans LMG 9581]
Length = 847
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 171/272 (62%), Gaps = 8/272 (2%)
Query: 297 IYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356
I H G TN+GKT+ A++ AK GIY +PLRLLA E++DK+N GV CSL TG+E+K+V
Sbjct: 360 ILHVGETNTGKTFQAIENMKAAKSGIYLAPLRLLAFEIYDKLNEEGVPCSLKTGEEEKVV 419
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL 416
+ H +CTVEM + YDV VIDE QM++D RG++W +A+ A E+H+ +
Sbjct: 420 TDATHFSCTVEMFHEKDYYDVVVIDEAQMLADKDRGFSWYKAITKAKAKEVHIICSFNAK 479
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ + E+ ++ E Y R PL VE L L + R GD +V FSRR++ E +
Sbjct: 480 SMILDLLGESDVDVFE--YRRDIPLEVEQH--LFRLNDTRKGDALVCFSRRQVLETASEL 535
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
++ +IYG++PPETR++Q F + E V+VA+DA+GMGLNL IRR+VF
Sbjct: 536 QR-GKRKVSMIYGSMPPETRKKQMQRF--LNGETTVIVATDAIGMGLNLPIRRIVFLENE 592
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG 568
K++G + + +VKQIAGRAGR+G IY G
Sbjct: 593 KFDGTRRRRLTSQEVKQIAGRAGRKG-IYDVG 623
>gi|384047152|ref|YP_005495169.1| ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
gi|345444843|gb|AEN89860.1| putative ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
Length = 870
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 170/266 (63%), Gaps = 7/266 (2%)
Query: 297 IYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356
I H G TN+GKTY AL+ +A G Y +PLRLLA+EVF+K+N GV CSL TG+E+K+V
Sbjct: 386 ILHLGDTNTGKTYTALKSLKKAASGSYLAPLRLLALEVFEKLNKDGVACSLKTGEEEKIV 445
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL 416
+ H+A TVEM S E DV VIDE QM+ D RG++W +A+ A ++H+ G S+
Sbjct: 446 EDAQHMAGTVEMFSELEHGDVTVIDEAQMIQDRDRGFSWYKAITRANAKQVHVIGSLSIR 505
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ ++ E++E YER PL V+ + + V+ D ++ FSR+++ + +
Sbjct: 506 SMLEEMLDGVISEIYE--YERDIPLKVDLRKF--KIEQVKPADALIVFSRKKVLQTAAKL 561
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
EK H VIYG++PPETRR+Q F + E +V+V++DA+GMGLNL IRR+V
Sbjct: 562 EK-DGHKVSVIYGSMPPETRRKQIEQFIHR--ETNVIVSTDAIGMGLNLPIRRIVLLENM 618
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRG 562
K++G K + ++KQIAGRAGR+G
Sbjct: 619 KFDGQKRRLLTSQELKQIAGRAGRKG 644
>gi|294499021|ref|YP_003562721.1| helicase domain-containing protein [Bacillus megaterium QM B1551]
gi|294348958|gb|ADE69287.1| helicase domain protein [Bacillus megaterium QM B1551]
Length = 869
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 116/266 (43%), Positives = 170/266 (63%), Gaps = 7/266 (2%)
Query: 297 IYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356
I H G TN+GKTY AL+ +A G Y +PLRLLA+EVF+K+N V CSL TG+E+K+V
Sbjct: 386 ILHLGDTNTGKTYTALKSLKKAASGSYLAPLRLLALEVFEKLNKDRVPCSLKTGEEEKIV 445
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL 416
+ H+A TVEM S E DV VIDE QM+ D RG++W +A+ A ++H+ G S+
Sbjct: 446 EDAQHMAGTVEMFSELEHGDVTVIDEAQMIQDRDRGFSWYKAITRANAKQVHVIGSLSIR 505
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ ++ E+HE YER PL V+ + + V+ D ++ FSR+++ + +
Sbjct: 506 SMLEEMLDGVISEIHE--YERDIPLKVDLRRF--KIEQVKPADALIVFSRKKVLQTAAKL 561
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
EK H VIYG++PPETRR+Q F ++ E +V+V++DA+GMGLNL IRR+V
Sbjct: 562 EK-DGHKVSVIYGSMPPETRRKQIEQFINR--ETNVIVSTDAIGMGLNLPIRRIVLLENM 618
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRG 562
K++G K + ++KQIAGRAGR+G
Sbjct: 619 KFDGQKRRLLTSQELKQIAGRAGRKG 644
>gi|254457657|ref|ZP_05071085.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|373867546|ref|ZP_09603944.1| putative RNA helicase [Sulfurimonas gotlandica GD1]
gi|207086449|gb|EDZ63733.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|372469647|gb|EHP29851.1| putative RNA helicase [Sulfurimonas gotlandica GD1]
Length = 930
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 256/469 (54%), Gaps = 16/469 (3%)
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
IK+ R + + + FP AR M+RK+ H GPTNSGKTY+A++R +A G Y +P
Sbjct: 406 IKKQRQALLARTIRDFKNLFPIARDMRRKLTLHIGPTNSGKTYSAMKRLEQADTGYYLAP 465
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMM 386
LRLLA+E ++ + A G+ SL+TG+E+ + + HI+ T+EM++ D DV VIDE+QM+
Sbjct: 466 LRLLALEGYEGLKAEGIEASLITGEEQLINEDATHISSTIEMLNFDVDVDVCVIDEVQML 525
Query: 387 SDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAK 446
D RG+AW A++G A EI + G +V V + G+EL +ER PL
Sbjct: 526 DDRDRGWAWANAIIGAPAKEIIMTGSSNVKAAVIALAEYLGEELEIIEFERKNPL----- 580
Query: 447 TLLG---DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLF 503
TLL ++V ++AFSR+++ +K + + V+YG L PE RR++A F
Sbjct: 581 TLLEFPISSKDVEESTAIIAFSRKDVLRLKQDFSRFFS--VSVVYGNLSPEVRREEARRF 638
Query: 504 NDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563
+ D + +L+A+DA+ MG+NL I+ ++F K++G + S++ QI+GRAGR G
Sbjct: 639 REGDTQ--ILIATDAIAMGMNLPIKTILFSKAEKFDGITQRNLFPSEILQISGRAGRYG- 695
Query: 564 IYPDGLTTTLNLDDLDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEK 622
+ +G L++D L + + K+P E+ + E ++L + L + ++L+
Sbjct: 696 MKEEGFVGALDMDTLRIIKKNFFKEPREISIPFNVMANLEHIKLVSSILEENSLSEILKF 755
Query: 623 FGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFA 682
F EN +G + D + + A +++ L + +++ AP+ ++ P + +
Sbjct: 756 FVENMEFNGPFRASNLDDMLEAALIVDGFD-LDIATKYHLACAPLTLKSPYIVASFESYI 814
Query: 683 SSYSKNAPVSIAMGMPKGS-AKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+ K PV GS A ELL E + +S+YLWLS++FK+
Sbjct: 815 LALEKKLPVIYTPPFLVGSFAGTTDELLRAEDMVKEISLYLWLSYRFKD 863
>gi|397687838|ref|YP_006525157.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
gi|395809394|gb|AFN78799.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
Length = 812
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 149/482 (30%), Positives = 246/482 (51%), Gaps = 24/482 (4%)
Query: 289 ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLL 348
AR + R GPTNSGKT+ A++ ++ IY SPLRL+A+E +++ ++GV CSL+
Sbjct: 309 ARRITRTWTALLGPTNSGKTHRAIEAMTSVERAIYLSPLRLMALENQERIESMGVPCSLV 368
Query: 349 TGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
TG+E+ + + H CTVE + + +DV V+DE+QMM+D+ RG+AW AL+ E
Sbjct: 369 TGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADSQRGWAWVDALVSAYTPE 428
Query: 407 IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
+ + G + ++ +C D L + +R P VE L+ + G +VAFSR
Sbjct: 429 LIMTGPMLIQPSLKTLCDLCEDHLLVKRTKRLSP--VEVARRATSLKQLDEGSMLVAFSR 486
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
+ + E+K +E T V+YGAL PE RR+QA F ++ E D++VA+DAVGMGLNL
Sbjct: 487 KTVLELKALLEM-TGKSVSVVYGALSPEVRREQARRF--REGEADLMVATDAVGMGLNLP 543
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586
+ FY+ KY+G + + +VKQI GRAGR G + G T L+ L + +
Sbjct: 544 AHTLCFYTDEKYDGIQNRQLRVQEVKQIGGRAGRFGH-HDSGTITALDGQTLQAIRQLFY 602
Query: 587 QPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKV 644
P + V + + P E ++ A + + + + F N + D + +
Sbjct: 603 SPDQPVDLSQFQVRPSIEHLQAIAELMGDPSLLRAWLTFNRNINYGAEFISILPDELAEW 662
Query: 645 ANMLEKVQGLSLEDRFNFCFAPVNIR---DPKAMYHLLRFASSYSKNAPVSIAMGMPKGS 701
+++ Q ++ R + FA IR D A H ++ +++ PV +P+
Sbjct: 663 IKLIDDPQ---IDLRLRWIFACTPIRGGLDSPAATHAQQWLKKVAQDKPVE----LPRLF 715
Query: 702 AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKP 761
+A+L LE+ ++ YL L+ FP ++AE + + E + + L+ KP
Sbjct: 716 I--EADLATLESTLHIIETYLHLARTLPAH-FPALEQAEGHRSLLNEAITRELSRRR-KP 771
Query: 762 ES 763
S
Sbjct: 772 RS 773
>gi|402579073|gb|EJW73026.1| hypothetical protein WUBG_16067, partial [Wuchereria bancrofti]
Length = 227
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 151/240 (62%), Gaps = 21/240 (8%)
Query: 302 PTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----- 356
PTNSGKTY ALQ+F +AK G YC PLRLLA EV +K N G+ C ++TG+E++
Sbjct: 1 PTNSGKTYEALQQFYQAKTGFYCCPLRLLANEVCEKTNEKGIKCDMITGEERRYAVDADN 60
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL 416
P S+H+A TVEMV D +VAVIDEIQM+ D RG+AWTRALLG+ A EIHLCG+ + +
Sbjct: 61 P-SSHVAMTVEMVPVDVNVEVAVIDEIQMLRDQSRGWAWTRALLGIAAKEIHLCGEEAAV 119
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
D+VR + G+ + YER PL GDC+V FS +F V ++
Sbjct: 120 DIVRSLLDPIGEHVEVHLYERKTPLT--------------DGDCLVCFSVSMLFSVAKSL 165
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
K VIYGALPP T+ QA FN+ + +V+VA+DAVGMGLNLNIRR V + S
Sbjct: 166 TK-LGVQPTVIYGALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRFVAFICS 224
>gi|299470377|emb|CBN78426.1| ATP-dependent RNA helicase, mitochondrial, putative [Ectocarpus
siliculosus]
Length = 745
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 143/220 (65%), Gaps = 9/220 (4%)
Query: 249 KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKT 308
K L P VE E + DEI+ + M DL P FP AR+ KR+IIYH GPTNSGKT
Sbjct: 525 KGLIPRLVELAQESYADEIEATKRMDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKT 584
Query: 309 YNALQRFMEA---------KKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFS 359
Y A++R +A G++C PLRLLA+EV++++N+ GVYCSL+TGQEK+ VPF+
Sbjct: 585 YQAIERLKKAGADRQPGDGPAGLFCGPLRLLALEVYEQLNSQGVYCSLMTGQEKREVPFA 644
Query: 360 NHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVV 419
H++CT+EM ST Y+VAVIDEIQM++D RG +WT A+LGL EIH+CG +V
Sbjct: 645 THVSCTIEMASTVNEYEVAVIDEIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLV 704
Query: 420 RKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
+ ETGD+ + Y+R LV ++L + +N++ G+
Sbjct: 705 EAMAKETGDDFELREYQRKTELVCAEESLGNNYKNIQPGE 744
>gi|424779131|ref|ZP_18206064.1| helicase domain-containing protein [Alcaligenes sp. HPC1271]
gi|422886153|gb|EKU28584.1| helicase domain-containing protein [Alcaligenes sp. HPC1271]
Length = 465
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 231/452 (51%), Gaps = 35/452 (7%)
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACR 391
MEV D++ G+ C+L+TG+E+ +VP + H ACTVEM+ VAV+DEIQM+ D R
Sbjct: 1 MEVRDRLMNAGIPCNLVTGEERVMVPGAQHTACTVEMMDPTMEVRVAVLDEIQMLQDEQR 60
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVV-------- 443
G+AWT AL+G+ A + +CGD SVL ++ + + + ER PL V
Sbjct: 61 GWAWTAALVGVPARTLFVCGDASVLRPCERLVRSMEETMELEFTERKTPLEVMPYPVDPP 120
Query: 444 ---------EA-----KTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYG 489
EA K + + V GD VVAF+R+++ + A + IYG
Sbjct: 121 RATGKQGRQEAPWRGRKDRQREAQGVSKGDAVVAFTRKDVLTLS-ARYRAQGWKVATIYG 179
Query: 490 ALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGS 549
AL PE RR ++ F+ E DVLVA+DA+GMGLNL IRRV+F ++ K++G + + +
Sbjct: 180 ALAPEVRRTESERFS--QGEADVLVATDAIGMGLNLPIRRVLFSTVHKFDGRSMRALNAT 237
Query: 550 QVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK-KVGLFPFFEQVELFA 608
+V+QIAGRAGR G +YP G ++ DL+++ L+ V ++ + P E V+ A
Sbjct: 238 EVRQIAGRAGRYG-LYPKGYVGAMDKQDLNHIRTQLQSDAPSVDLRLPIAPSPEHVQALA 296
Query: 609 GQLSNYTFCQLLEKFGENCRLDGSYFLCR--HDHIKKVANMLEKVQGLSLEDRFNFCFAP 666
L N +L+ F + D F D I+ + L L ++F F AP
Sbjct: 297 SLLDNNNIGAVLQYFAQKVASDSPLFQTAGLKDAIELGFCVDRLAPKLDLREKFTFACAP 356
Query: 667 VNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSH 726
V++ + + R S+Y P+++ + + + L D E + +S+Y W S
Sbjct: 357 VSVDKDTELDYFKRCLSAYVAQRPMALPPAPSWLKSASPSRLEDAELLSKQISLYAWFSM 416
Query: 727 QFKEEVF---PYAKKAEAMATDIAE--LLGQS 753
+F +VF P+ + ++ + E LL QS
Sbjct: 417 KFP-QVFDQGPWLPEVRSLVSRFIERSLLHQS 447
>gi|361067447|gb|AEW08035.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148462|gb|AFG56032.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148463|gb|AFG56033.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148464|gb|AFG56034.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148465|gb|AFG56035.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148466|gb|AFG56036.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148467|gb|AFG56037.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148468|gb|AFG56038.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148469|gb|AFG56039.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148470|gb|AFG56040.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148471|gb|AFG56041.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148472|gb|AFG56042.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148473|gb|AFG56043.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148474|gb|AFG56044.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148475|gb|AFG56045.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148476|gb|AFG56046.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
gi|383148477|gb|AFG56047.1| Pinus taeda anonymous locus 0_17383_01 genomic sequence
Length = 140
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/139 (71%), Positives = 117/139 (84%)
Query: 601 FEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRF 660
FEQVELFAGQL + TF QLLEKF E+C LDG++FLCRHDH+K+VA+ML++V GLSLEDR+
Sbjct: 2 FEQVELFAGQLPDITFSQLLEKFAESCVLDGAFFLCRHDHVKRVAHMLDRVPGLSLEDRY 61
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSM 720
NFCF+PVN RDP+AM LLRFA YSKN PV IAMG+PK SAKND +LL+LETKHQVLSM
Sbjct: 62 NFCFSPVNTRDPQAMSSLLRFALQYSKNLPVRIAMGVPKESAKNDEDLLNLETKHQVLSM 121
Query: 721 YLWLSHQFKEEVFPYAKKA 739
Y+WLS F E FPY + A
Sbjct: 122 YMWLSQHFSEGTFPYKETA 140
>gi|421615784|ref|ZP_16056804.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
gi|409782320|gb|EKN61885.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
Length = 786
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 149/455 (32%), Positives = 226/455 (49%), Gaps = 23/455 (5%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R+ GPTNSGKT+ +++ A+ GIY SPLRL+A+E +++ A+G
Sbjct: 304 HQLYP-ARRLTRRWTALLGPTNSGKTHRSIEAMAAAEHGIYLSPLRLMALENQERIEAMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H CTVE + + +DV V+DE+QMM+D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
+ + G + +R +C D L Q +R P VE L + G
Sbjct: 423 SAHTQALMMTGPALIEPSLRTLCELCEDRLVVQRTKRLSP--VEVARRATTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-AGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FYS KY+G + + +VKQI GRAGR G + G T L+ L
Sbjct: 538 MGLNLPAHTLCFYSDEKYDGIQNRQLKVQEVKQIGGRAGRFGH-HDSGEITALDAQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ + P V + + P + + + + + + F N ++
Sbjct: 597 IRQLFNSPDAPVDLSQFQVRPSIDHLTAISELMGEPSLLRAWLTFNRNINYGEAFISVLP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR---DPKAMYHLLRFASSYSKNAPVSIAM 695
D ++A +E + + R + FA IR D A H A + K A+
Sbjct: 657 D---ELAEWIELIDDPKIPLRLRWTFACTPIRGGFDSPASQH----AQRWIKRVAEGHAI 709
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
MP+ +D L LE+ V+ YL LS E
Sbjct: 710 PMPRLLLGSD--LASLESTLHVVETYLHLSRALPE 742
>gi|392420786|ref|YP_006457390.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
gi|390982974|gb|AFM32967.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
Length = 785
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 240/479 (50%), Gaps = 24/479 (5%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR++ R+ I GPTNSGKT+ +++ A+ IY SPLRL+A+E +++ ++G
Sbjct: 304 HKLYP-ARLLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H CTVE + + +DV V+DE+QMM+D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
++ + G + +R +C D+L Q +R P+ V ++ L + G
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSPVEVSKRS--TTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-VGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FY+ K++G + + +VKQI GRAGR G + G T L+ L
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGH-HDSGEITALDPQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ P V + + P + + + + + + F N ++
Sbjct: 597 IRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRAWLTFNRNINYGEAFISVLP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR-DPKAMYHLLRFASSYSKNAPVSIAMGM 697
D + + +++ + + L R+ F P+ D A H A + K A+ M
Sbjct: 657 DELAEWIELIDDPK-IPLWLRWTFACTPIRGGFDSPASQH----AQRWIKRVAEGHAIPM 711
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
PK +D L LE+ V+ YL LS E FP E D +LL ++T
Sbjct: 712 PKLLLGSD--LASLESTLHVVETYLHLSRSLPEH-FPEHDDGE----DARKLLNDAITR 763
>gi|389584589|dbj|GAB67321.1| ATP-dependent DEAD box helicase, partial [Plasmodium cynomolgi
strain B]
Length = 586
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 165/279 (59%), Gaps = 27/279 (9%)
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACT 365
GKTY A Q ++ G+YC+PLR+LA E+ K+ L SLLTGQE + H CT
Sbjct: 1 GKTYEAFQSLCKSSNGLYCAPLRILAWEIHKKLIKLNKITSLLTGQELIKKKNATHTVCT 60
Query: 366 VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425
VEM D YD VIDEIQM++ RG AWT LL L +EI+LCG +++ +V+K+
Sbjct: 61 VEMTPLDRQYDCVVIDEIQMINHDTRGCAWTNVLLNLDCEEIYLCGSDNIISLVKKLADL 120
Query: 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCC 485
D+L + +ER L VE T+ + +++GDCV+ FSR I +K +E+ N
Sbjct: 121 LEDQLIIKRFERLTDLHVEENTV--EWEKLKTGDCVITFSRNSIMLLKNRLER-LNKRVF 177
Query: 486 VIYGALPPETRRQQANLFN------------DQDNEFD------------VLVASDAVGM 521
VIYG+LPPE +R Q FN D++ + + +L+A+D +GM
Sbjct: 178 VIYGSLPPEIKRMQVESFNRCCAGEGSIGEADENEKAELPPSTCDKKKQTILIATDVIGM 237
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
G+N+NIRR++FYSL K++GD++ + S+V QIAGRAGR
Sbjct: 238 GVNINIRRIIFYSLQKFDGDRLRHLYASEVLQIAGRAGR 276
>gi|452747268|ref|ZP_21947065.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
gi|452008789|gb|EME01025.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
Length = 786
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 237/479 (49%), Gaps = 24/479 (5%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R+ I GPTNSGKT+ +++ A+ IY SPLRL+A+E +++ ++G
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H CTVE + + +DV V+DE+QMM+D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
++ + G + +R +C D+L Q +R P VE L + G
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP--VEVSKHATTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-AGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FY+ K++G + + +VKQI GRAGR G + G T L+ L
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGH-HDSGEITALDPQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ P V + + P + + + + + + F N ++
Sbjct: 597 IRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRAWLTFNRNINYGEAFISVLP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR-DPKAMYHLLRFASSYSKNAPVSIAMGM 697
D + + +++ + + L R+ F P+ D A H A + K A+ M
Sbjct: 657 DELAEWIELIDDPK-IPLWLRWTFACTPIRGGFDSPASQH----AQRWIKRVAEGHAIPM 711
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
PK +D L LE+ V+ YL LS E FP E D +LL ++T
Sbjct: 712 PKLLLGSD--LASLESTLHVVETYLHLSRSLPEH-FPEHDDGE----DARKLLNDAITR 763
>gi|399218229|emb|CCF75116.1| unnamed protein product [Babesia microti strain RI]
Length = 666
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/529 (29%), Positives = 260/529 (49%), Gaps = 59/529 (11%)
Query: 249 KFLFPIFVE-----------FCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKII 297
+ + PIF++ F +F ++ R + DL++P FP AR + RKI
Sbjct: 77 RLVMPIFIQEPTEIMRQFNQFINNKFYPQLCSLRDLSLITDLSRPDQAFPQARQLNRKIF 136
Query: 298 YHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357
H GP NSGKT+++L + ++AK G+YC+PLRL+A E+FDK+ G+ +LLTGQ++ +
Sbjct: 137 IHHGPPNSGKTHSSLLKLIQAKSGVYCAPLRLMAYEIFDKLTRAGIKTNLLTGQKRMIDS 196
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGL--------------- 402
S+H+ CTVEM+ + +DV +IDE+QM++D RG+AW RA L
Sbjct: 197 ESSHLVCTVEMLPIGKSFDVGIIDEMQMVADESRGFAWCRAFFALQVCVILLCDCIFLYL 256
Query: 403 ----------MADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF-KPL-VVEAKTLLG 450
+ + + LC L + + ++ + Y R +P+ + EA L
Sbjct: 257 CMSCMYLLNGLINALRLCIMFCALPIYTALANQCNETAQLIEYNRLTQPVKICEAPITLD 316
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
DL+ DC+V+FS +F+ K +E C++YG+LPPETR Q FN +
Sbjct: 317 DLK---PRDCLVSFSPITLFQYKFKLE-CLGKKSCILYGSLPPETRLLQIERFNRGGH-- 370
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKY---NGDKIIPVPGSQVKQIAGRAGRRGSIYPD 567
+L+A+D +GMGLNL+I+RV+ +L K N + P+ SQ+ AGR G S
Sbjct: 371 -ILLATDVIGMGLNLDIQRVILANLEKSIDGNNRPLSPLELSQIVNRAGRFGISNSAAEC 429
Query: 568 GLTTTLNLDDLDYL----IECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKF 623
G+ L+D + I+ L ++ L F E ++ + Q + +++ F
Sbjct: 430 GVLKKQLLEDFKRILGSKIDNLCDIQMTLEPNQLITFIESIK--STQNDTISPAVIVKTF 487
Query: 624 GENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS 683
+ Y L + D + +++ LE + L+ + + AP++ + L FAS
Sbjct: 488 KNLTTVTKPYNLSKLDKMNRLSFCLEGI-NLTTKLTVEYLNAPLDTNHQMNLASLRLFAS 546
Query: 684 SYSKNAPVS----IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+S N + + + + S N A+L E + VL Y ++S ++
Sbjct: 547 RHSDNLKIHLDDLLDIDKFRSSIDNIAKLKLYELVYSVLDYYQYMSFRY 595
>gi|331250563|ref|XP_003337889.1| hypothetical protein PGTG_19382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316879|gb|EFP93470.1| hypothetical protein PGTG_19382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 439
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 144/441 (32%), Positives = 214/441 (48%), Gaps = 86/441 (19%)
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
M+S + YDV VIDEIQM+ D RG AWT+A+LG+ A E+HLCG+ SV+ ++ + +
Sbjct: 1 MLSCQQFYDVVVIDEIQMIGDHFRGDAWTQAVLGVQAKELHLCGEESVVGLIESLANSCQ 60
Query: 428 DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVI 487
DE Y+R PL V +L GDL V+ GDC+V FSR I+ +K AI+ T+ +
Sbjct: 61 DEFILHRYQRLTPLKVADSSLKGDLSKVQRGDCLVTFSRNNIYALKKAIQSATDLRVGMA 120
Query: 488 YGALPPETRRQQANLFN-----DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
YG LPPE R ++A +FN + + +DVLV SDA+GMGLNL I+RV+F SL K++G
Sbjct: 121 YGGLPPEVREREAQMFNLGSQVEGEGGYDVLVGSDAIGMGLNLKIKRVIFQSLHKFDGRN 180
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYP-------------DGLTTTLNLDD----LDYLIECL 585
+ + SQ+K I GRAGR G I P +G T +DD + L
Sbjct: 181 EVALSTSQIKLIGGRAGRFG-ILPKNVGPGESGESREEGSTVGRRVDDERDGYESLTPID 239
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHI---- 641
PFE +++ L F VE A + L GS L R ++
Sbjct: 240 GAPFEKIERAVLKAPFTTVEGLARR-----------------ALPGSLTLTRPEYAIGDE 282
Query: 642 ---KKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS------------ 686
+A+ L+ + LSL +R FC AP + R P A+ L ++A++++
Sbjct: 283 KNSGSIADALQHILPLSLSERDLFCSAPASARSPVAISALQQWANAHALRRQVDFLAWLR 342
Query: 687 -KNAPVSIA--------------------------MGMPKGSAKNDAELLDLETKHQVLS 719
+N +I + K ++ LL LE+ H+ L
Sbjct: 343 HENVEQTIGSIESSINSSSSSSSSSATTTTTNHPKQNLIKLERLHNENLLRLESIHKCLV 402
Query: 720 MYLWLSHQFKEEVFPYAKKAE 740
+YLWL+ + E + + E
Sbjct: 403 LYLWLAFRLPESFVDFERCQE 423
>gi|298242251|ref|ZP_06966058.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555305|gb|EFH89169.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 961
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 151/453 (33%), Positives = 229/453 (50%), Gaps = 30/453 (6%)
Query: 286 FPFARVMKR---KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
FP R +R +I G NSGKT AL+R + A G Y +PLRLLA E++D +N G
Sbjct: 458 FPDWRHEQRANQRIKVLLGEANSGKTRAALERLIAAGSGWYLAPLRLLAYEIYDALNRRG 517
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGL 402
+ C+LLTG+E+ +V + A T+EM VIDE M+ D RG+AWTRAL+
Sbjct: 518 IACNLLTGEEEIVVRGAQITAATIEMFDARSGGGCVVIDEAHMLGDPDRGWAWTRALMEA 577
Query: 403 MADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVV 462
A+E+ + G + +V ++ G + R PL + T LR++ + VV
Sbjct: 578 RAEEMLVLGPLAARPLVERLLYAVGQPFTFEQSSRLVPLRM--ATTPYKLRDLPARTVVV 635
Query: 463 AFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522
AFSR + +K +E+ ++YGALPPE RR+QA+ F E ++ VA+DA+GMG
Sbjct: 636 AFSRGMVLALKADLEQ-MGRKVSIVYGALPPEVRRRQADRFA--CGETEICVATDAIGMG 692
Query: 523 LNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582
LNL V FY KY+G ++ P+ +V QI GRAGR G + G+ T LN DLD+L
Sbjct: 693 LNLPADAVCFYETKKYDGKRVRPLTAMEVHQIGGRAGRFG-LAEQGIITALNKVDLDFLR 751
Query: 583 ECLKQPFEVVKKVGLFPFFEQVELFAGQLSN--YTFCQLLEKFGENCRLDGSYFLCRHDH 640
+ +Q +++ + P + L G+L+ +C+L E+ F+ D
Sbjct: 752 QQFEQTPSPIRQAYVAPSVSDLALLPGRLAARLRQWCEL-----ESIPASMRSFIKTADL 806
Query: 641 IKKV--ANML--EKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMG 696
++ A+ML E+ L L AP P++ ++ A + K +
Sbjct: 807 GDRIELASMLQPEEEADLGLGAAVKLTHAPAR---PESRFYWRWCARALVKGDRLPSPPD 863
Query: 697 MPKGSAKNDAELLDLETKHQVLS---MYLWLSH 726
PK A +D DL QV++ +YLWL+
Sbjct: 864 PPKDLASSD----DLVRAEQVIACADLYLWLAR 892
>gi|359781543|ref|ZP_09284767.1| ATP-dependent RNA helicase [Pseudomonas psychrotolerans L19]
gi|359370607|gb|EHK71174.1| ATP-dependent RNA helicase [Pseudomonas psychrotolerans L19]
Length = 797
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 243/481 (50%), Gaps = 28/481 (5%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R GPTNSGKT+ +++ IY SPLRL+A+E +++ +LG
Sbjct: 304 HQNYP-ARRLTRTWTALLGPTNSGKTHRSIEAMAAVTHAIYLSPLRLMALENQERLESLG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + P + H CTVE + + ++V V+DE+QM++D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIRPGATHFCCTVEEFARFRRQQWEVVVVDEVQMLADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
+ + G + +R +C D L + +R P+ V L + G
Sbjct: 423 SAHTKRLLMTGPALIEPSLRTLCELCEDRLEIKPTKRLSPVTVARHA--TTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSRR + E+K +E V+YGAL PE RR+QA F ++ E +++VA+DAVG
Sbjct: 481 LVAFSRRVVLELKGLLEM-AGRRVSVVYGALSPEVRREQARRF--REGETEIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN---LDD 577
MGLNL + FY+ K++G + P+ +VKQI GRAGR G + +G T L L +
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGVENRPLRVQEVKQIGGRAGRFGH-HAEGEITALEPHVLRN 596
Query: 578 LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCR 637
+ L P + + + + P E + + + + + F N ++
Sbjct: 597 IKRLFHSPDDPVD-LHQFQVRPSLEHLRALSEFMEEPSLLRTWLTFNRNINYGDAFVSVL 655
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAPV--NIRDPKAMYHLLRFASSYSKNAPVSIAM 695
D + + +++ + G+ + R+ F P+ + P A R+ S ++ PV +
Sbjct: 656 PDELAEWIKLID-LPGIDFQLRWIFACTPIRGGLEGP-ASSQAQRWLRSVARGEPVDLPR 713
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLT 755
+P G+ +L LE+ V+ YL LS E+FP ++ + D +LL ++T
Sbjct: 714 -IPMGT-----DLAGLESALHVVETYLHLSRSLP-ELFPALERGQ----DHRDLLNDAIT 762
Query: 756 N 756
Sbjct: 763 Q 763
>gi|251771058|gb|EES51642.1| helicase domain protein [Leptospirillum ferrodiazotrophum]
Length = 516
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 233/459 (50%), Gaps = 33/459 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
+P AR ++R+ GPTNSGKT+ AL +EA+ G Y +PLRLLA E+ ++ A G+
Sbjct: 37 WPEARRVQRRWTAWLGPTNSGKTHEALA-HLEARGGRYLAPLRLLAQEIHERFEARGIPT 95
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L TG+E+ L S H++ TVEM ST E VIDE+QMM+D RG AW R LLG ++
Sbjct: 96 TLHTGEERILREESRHLSATVEMGSTTEEAPCVVIDEVQMMADRERGPAWVRGLLGSPSE 155
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
EI +CG P V +R++ G EL ++ R PL V + + L V G VVAF+
Sbjct: 156 EIMVCGTPHVEGALRRLADYAGVELDVRYTRRKTPLSVSSAPI--PLDRVPDGSIVVAFT 213
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R ++ + I + IYGA+PPE RR ++ F + E V+VA+DAVGMGLN+
Sbjct: 214 RLDVLSLAR-ILRDRGRPVATIYGAMPPELRRSESRRF--RAGEALVMVATDAVGMGLNV 270
Query: 526 NIRRVVFYSLSKYNG--DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583
V+F + +K++G D+I+ +V+QI GRAGR G ++ G+ ++ +
Sbjct: 271 PAEYVIFSTAAKFDGRMDRILEP--EEVRQIGGRAGRFG-LHEQGIIAGMDRRTHQIVAR 327
Query: 584 CLKQPFEVVKKVGLFPFFEQ--VELFAGQLSNYTFCQ-LLEKFGENCRLDGSYFLCRHDH 640
P V G FPF + L A +++ + LL + + D
Sbjct: 328 QFSHPSIPVN--GPFPFVPDYPIVLSASEVTGSANLEVLLSRLHASILSDAHLRSGIGPE 385
Query: 641 IKKVANMLEKVQG-LSLEDRFNFCFAPVNIRDPKAMYHLLRF----ASSYSKNAPVSIAM 695
I++ A +E++ L L +R+ FAP N Y R+ A + PV +A
Sbjct: 386 IRQKAARIERLAPLLPLSERWLLLFAPENR---TTEYEFWRWVGTVAGGNTGRDPVVLAP 442
Query: 696 GMPKGSAKNDAELLDLETKHQVLSMYLWLS----HQFKE 730
+ + + E +++Y WL+ H+F E
Sbjct: 443 EIRSIQGRQEG-----EEALARITLYRWLALRLPHRFPE 476
>gi|431927872|ref|YP_007240906.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431826159|gb|AGA87276.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 786
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 228/453 (50%), Gaps = 19/453 (4%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R+ GPTNSGKT+ +++ A+ GIY SPLRL+A+E +++ ++G
Sbjct: 304 HKLYP-ARRLTRRWTALLGPTNSGKTHRSIEAMAAAEHGIYLSPLRLMALENQERIESMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H CTVE + + +DV V+DE+QMM+D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
++ + G + +R +C D+L Q +R P VE L + G
Sbjct: 423 SAHTPQLMMTGPALIEPSLRTLCDLCEDKLVVQRTKRLSP--VEVARHATTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-AGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FY+ K++G + + +VKQI GRAGR G + +G T L+ L
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGIQNRQLNVQEVKQIGGRAGRFGH-HDNGEITALDPQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ P V + + P + + + + + + F N ++
Sbjct: 597 IRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRAWLTFNRNINYGEAFISILP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR-DPKAMYHLLRFASSYSKNAPVSIAMGM 697
D + + +++ + + L R+ F P+ D A H A + K A+ M
Sbjct: 657 DELAEWIELIDDPK-VPLWLRWTFACTPIRGGFDSPASQH----AQRWIKRVAEGHAIAM 711
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
PK +D L LE+ V+ YL L+ E
Sbjct: 712 PKLLLGSD--LASLESTLHVVETYLHLARSLPE 742
>gi|339493591|ref|YP_004713884.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800963|gb|AEJ04795.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 786
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 229/457 (50%), Gaps = 20/457 (4%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R+ I GPTNSGKT+ +++ A+ IY SPLRL+A+E +++ ++G
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H CTVE + + +DV V+DE+QMM+D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
++ + G + +R +C D+L Q +R P VE L + G
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP--VEVAKHATTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-AGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FY+ K++G + + +VKQI GRAGR G + G T L+ L
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGH-HDSGEITALDPQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ P V + + P + + + + + + F N ++
Sbjct: 597 IRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRSWLTFNRNINYGEAFVSVLP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR-DPKAMYHLLRFASSYSKNAPVSIAMGM 697
D + + +++ + + L R+ F P+ D A H A + K A+ M
Sbjct: 657 DELAEWIELIDDPK-IPLWLRWTFACTPIRGGFDSPASQH----AQRWIKRVAEGHAIPM 711
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
P+ A+L LE+ V+ YL L+ E FP
Sbjct: 712 PR--LLLGADLASLESTLHVVETYLHLARSLPEH-FP 745
>gi|146281980|ref|YP_001172133.1| ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
gi|145570185|gb|ABP79291.1| probable ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
Length = 786
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 229/457 (50%), Gaps = 20/457 (4%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R+ I GPTNSGKT+ +++ A+ IY SPLRL+A+E +++ ++G
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H CTVE + + +DV V+DE+QMM+D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
++ + G + +R +C D+L Q +R P VE L + G
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP--VEVAKHATTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-AGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FY+ K++G + + +VKQI GRAGR G + G T L+ L
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGH-HDSGEITALDPQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ P V + + P + + + + + + F N ++
Sbjct: 597 IRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRSWLTFNRNINYGEAFVSVLP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR-DPKAMYHLLRFASSYSKNAPVSIAMGM 697
D + + +++ + + L R+ F P+ D A H A + K A+ M
Sbjct: 657 DELAEWIELIDDPK-IPLWLRWTFACTPIRGGFDSPACQH----AQRWIKRVAEGHAIPM 711
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
P+ A+L LE+ V+ YL L+ E FP
Sbjct: 712 PR--LLLGADLASLESTLHVVETYLHLARSLPEH-FP 745
>gi|386020255|ref|YP_005938279.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
gi|327480227|gb|AEA83537.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 786
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 229/457 (50%), Gaps = 20/457 (4%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R+ I GPTNSGKT+ +++ A+ IY SPLRL+A+E +++ ++G
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H CTVE + + +DV V+DE+QMM+D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
++ + G + +R +C D+L Q +R P VE L + G
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP--VEVAKHATTLERLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-AGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FY+ K++G + + +VKQI GRAGR G + G T L+ L
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGH-HDRGEITALDPQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ P V + + P + + + + + + F N ++
Sbjct: 597 IRRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRSWLTFNRNINYGEAFVSVLP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR-DPKAMYHLLRFASSYSKNAPVSIAMGM 697
D + + +++ + + L R+ F P+ D A H A + K A+ M
Sbjct: 657 DELAEWIELIDDPK-IPLWLRWTFACTPIRGGFDSPASQH----AQRWIKRVAEGHAIPM 711
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
P+ A+L LE+ V+ YL L+ E FP
Sbjct: 712 PR--LLLGADLASLESTLHVVETYLHLARSLPEH-FP 745
>gi|299470376|emb|CBN78425.1| ATP-dependent RNA and DNA helicase, putative [Ectocarpus
siliculosus]
Length = 361
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/314 (37%), Positives = 171/314 (54%), Gaps = 30/314 (9%)
Query: 457 SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516
SGD VVAFSR++IF +K IE T H CCVIYG+LP ETR QA LFN +D +DVLVAS
Sbjct: 3 SGDAVVAFSRKDIFSIKKEIESKTPHKCCVIYGSLPQETRAHQARLFNSEDTGYDVLVAS 62
Query: 517 DAVGMGLNLNIRRVVFYSLSKYNGD--KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
DAVGMGLNLNIRRVVF+++SK G + +P + +KQI GRAGR G + G
Sbjct: 63 DAVGMGLNLNIRRVVFHAVSKRTGGGRAAVKLPPTMLKQIGGRAGRHGKQWEYG------ 116
Query: 575 LDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-----------FCQLLEKF 623
E + P E + K +FP + ++ F+ L + F
Sbjct: 117 --------EIMNTPLEPIPKAAIFPSVQHMQEFSNCLDETEADNPEGQERRRLAETFAAF 168
Query: 624 GENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS 683
+ ++ YFL HD + +AN L V+ L+L++R+ AP+N R+ + + FA+
Sbjct: 169 ADKAKVGDRYFLGTHDQHQALANALHPVENLTLKERYAISMAPINGRNTLLVRAIFLFAT 228
Query: 684 SYSKNAPVSIAMGM-PKGS-AKNDAELLDLETKHQVLSMYLWLSHQFKE-EVFPYAKKAE 740
+++ PV I M + PKG+ K+ E L +KH VL +Y W+ +F E F AE
Sbjct: 229 AHAAGLPVFINMQLPPKGTLPKSMTEFQTLCSKHNVLDLYRWMGVRFPSIECFTEKSVAE 288
Query: 741 AMATDIAELLGQSL 754
++ ++ ++L
Sbjct: 289 IQRVELESMINEAL 302
>gi|380472006|emb|CCF47001.1| ATP-dependent RNA helicase SUV3, partial [Colletotrichum
higginsianum]
Length = 419
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 210/409 (51%), Gaps = 58/409 (14%)
Query: 347 LLTGQEKKLVPFSNH-IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
++TG+E+++ N+ I+CTVEM + + DVAV+DEIQM+SD RG+AW++ALLG+MA
Sbjct: 1 MITGEEQRIPDSDNYFISCTVEMTPLNRLVDVAVLDEIQMISDRDRGWAWSQALLGVMAK 60
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E+HLCG+ V+D+++ ICS G++ Y+R PL K+L DL +R GD VVAF+
Sbjct: 61 EVHLCGEERVVDLIKSICSSIGEKCIVHRYQRLSPLQTMKKSLKNDLTKLRKGDAVVAFT 120
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
R N H LFND DNE+D LVASDA+GMGLNL
Sbjct: 121 R-------------VNLHA-----------------LFNDPDNEYDFLVASDAIGMGLNL 150
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-----------RGSIYPD---GLTT 571
I+RV+F + +K++G + + S++KQI GRAGR G+ P+ G T
Sbjct: 151 EIKRVIFETATKHDGTQYRTLTTSEIKQIGGRAGRYKTARQAATDPNGTAAPEEKMGYVT 210
Query: 572 TLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKFGENCRLD 630
TL DDL + + + + + P +E F+ T +L + E +
Sbjct: 211 TLVDDDLPIIEKAFNSETQPLDVATIHPPASVIEQFSEYFPPDTPLSFILLRLRELAPVS 270
Query: 631 GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP 690
Y + + ++A+ +++ +++++R AP ++R+P + A S
Sbjct: 271 QRYSVYISELSLEIADAIQEFP-MTIQERITILHAPASLREPGMRAIIKAVAKCISTRTG 329
Query: 691 VSIAMGMPKGSAKNDAELLD-----------LETKHQVLSMYLWLSHQF 728
++ P DA L D +E HQ +++YLW+S++F
Sbjct: 330 GALYDIQPINLELLDATLDDFSNQGRRYLHSIEALHQAITIYLWVSYRF 378
>gi|391328357|ref|XP_003738656.1| PREDICTED: ATP-dependent RNA helicase suv3, mitochondrial-like,
partial [Metaseiulus occidentalis]
Length = 316
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 171/279 (61%), Gaps = 8/279 (2%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL 355
+I GPTNSGK++ AL A+ G+ +PLRLLA E + + GV SL+TG+E+ +
Sbjct: 1 MILITGPTNSGKSHAALDALANAESGLALAPLRLLAHEFREALGKRGVAASLMTGEERII 60
Query: 356 VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV 415
P + HIA TVEM + DVA+IDE QM++D RG AWT A++G+ A ++++ G P
Sbjct: 61 EPGAQHIAATVEMCPFHKPVDVAIIDEAQMLTDPDRGAAWTAAIMGVPARKVYILGAPDC 120
Query: 416 LDVVRKICSETGDELHEQHYERFKPL-VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
+ ++R+I + D L E ER PL A T L DL D V+AFSRR++ +++
Sbjct: 121 IPLIRRIATLCNDPLDEISLERKSPLRAAAAPTRLNDLSK---SDAVIAFSRRDVLDLRA 177
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
+ V+YGAL PE RR +A FN E D+LVA+DA+GMGLNL+IRRV+F +
Sbjct: 178 ELMGR-GRRVAVVYGALSPEVRRAEAARFN--RGEADILVATDAIGMGLNLSIRRVIFSA 234
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
L K++G + + +++QI GRAGR G + DG+ L
Sbjct: 235 LRKFDGRQSRDLLAQEIRQIGGRAGRYGH-HEDGIVGVL 272
>gi|413918546|gb|AFW58478.1| hypothetical protein ZEAMMB73_304726 [Zea mays]
Length = 151
Score = 201 bits (510), Expect = 2e-48, Method: Composition-based stats.
Identities = 92/158 (58%), Positives = 115/158 (72%), Gaps = 20/158 (12%)
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
++ + DLT PHTW+P R M+R+++YHCGPTNSGKT+NAL F AK G+YCSPLRLLA+
Sbjct: 11 LMATTDLTAPHTWYPSTRAMRRRVVYHCGPTNSGKTHNALASFSAAKCGVYCSPLRLLAI 70
Query: 333 EVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
E+FDKVNA GV CSL TGQE K V F++H+ACT+EMVST+E+
Sbjct: 71 EIFDKVNATGVSCSLRTGQEVKEVAFASHLACTIEMVSTEEIS----------------- 113
Query: 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
TR+ L ADEIHLCGDPSVL +VRKIC++TGD+L
Sbjct: 114 ---TRSPLLTRADEIHLCGDPSVLSIVRKICADTGDDL 148
>gi|294886391|ref|XP_002771694.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239875416|gb|EER03510.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 219
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 137/223 (61%), Gaps = 9/223 (4%)
Query: 312 LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVST 371
+Q A +G+YC PLRLLA + F+ + A+G+ L+TGQ+ + H++CTVEM
Sbjct: 1 MQALRTASRGVYCGPLRLLAWQCFEDLKAMGLDSDLITGQDTE-TGVGTHLSCTVEMCPG 59
Query: 372 DEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDE 429
YDV VIDE+Q++ D RG AWTRA+L L A EIHLCGD ++V +
Sbjct: 60 PGSVEYDVGVIDEVQLVGDRERGGAWTRAILALPAREIHLCGDGRATELVETLLGTYRPN 119
Query: 430 ---LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCV 486
+ + Y R PL + K + G R++R GDCVV FSR +I VK IE+ T CV
Sbjct: 120 DVVVRHKPYSRLSPLFLSGKAI-GSYRSLRRGDCVVVFSRWDIMRVKADIERSTRWRVCV 178
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+YG LPPETRR Q N FN Q EFDVLVASD +G+GLN NIRR
Sbjct: 179 VYGTLPPETRRDQINSFNRQ--EFDVLVASDCIGLGLNFNIRR 219
>gi|357456301|ref|XP_003598431.1| 40S ribosomal protein S19-like protein [Medicago truncatula]
gi|355487479|gb|AES68682.1| 40S ribosomal protein S19-like protein [Medicago truncatula]
Length = 648
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 167/368 (45%), Gaps = 154/368 (41%)
Query: 391 RGYAWTRALLGLMADEI----------HLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
RGYA TR LLG E+ HLCGDPSVL +VRK T DEL EQ YERFK
Sbjct: 275 RGYARTRVLLGFKVHELRAPWFKVHELHLCGDPSVLHIVRKTYQGTKDELCEQQYERFKQ 334
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
LVVEAKTLLG F+ R
Sbjct: 335 LVVEAKTLLGK-----------NFATR--------------------------------- 350
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
NLFNDQ +G GLNLNI+RV+F SLSK +P S+
Sbjct: 351 NLFNDQ------------MGTGLNLNIQRVIFSSLSK--------MPLSRWT-------- 382
Query: 561 RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLL 620
TTL+LDD+DYLI+CLKQPF+ V V +FPF+
Sbjct: 383 ---------ATTLHLDDMDYLIKCLKQPFDHVTTVDIFPFY------------------- 414
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANM---LEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
EKFG+NC LDGSYFLC DHI K ANM L+++QG L
Sbjct: 415 EKFGKNCCLDGSYFLCPQDHIYKTANMLDDLDQIQGSHL--------------------- 453
Query: 678 LLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAK 737
P KN + LLDLE++HQVL YLWLS+ F EE FPYAK
Sbjct: 454 --------------------PGSMPKNYSRLLDLESRHQVLLSYLWLSNYFDEENFPYAK 493
Query: 738 KAEAMATD 745
KAEAMA D
Sbjct: 494 KAEAMAPD 501
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 10/52 (19%)
Query: 535 LSKYNGDKIIP--------VPG--SQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
+ +++ +I+P +PG SQVK IAGR+ RRG +YPDGL TTL+LD
Sbjct: 595 IHQWSSGRIVPCHGTDPGSIPGWSSQVKMIAGRSDRRGCLYPDGLATTLHLD 646
>gi|430811994|emb|CCJ30590.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 246
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 142/217 (65%), Gaps = 7/217 (3%)
Query: 245 DDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTN 304
D A+K F F+ P EI R +++ +D+ P WFP AR ++R H GPTN
Sbjct: 35 DKALKKSFLTFLMVKKLSVP-EINRQKSI---SDMRYPSEWFPNARAIERSWYLHIGPTN 90
Query: 305 SGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP--FSNHI 362
SGKTY AL++ +A+ G + PLRLLA E+FDK+ G+ C+L+TG+E+K++ + HI
Sbjct: 91 SGKTYQALKKLEKARSGWFAGPLRLLAHEIFDKMMKKGIVCNLITGEEQKIIDKNAALHI 150
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEMV+ D++ D+ VIDE+QM++D RG+AWT+ LLG+ A EIHLCG+ S ++++ KI
Sbjct: 151 S-TVEMVNLDKLMDIIVIDEVQMIADPHRGWAWTQVLLGVQASEIHLCGEESSVELILKI 209
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
G+++ HY+R PL ++L GDL V SGD
Sbjct: 210 AKSMGEKVKIYHYKRLNPLEPLKQSLYGDLTKVESGD 246
>gi|413918545|gb|AFW58477.1| hypothetical protein ZEAMMB73_372211 [Zea mays]
Length = 161
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/142 (61%), Positives = 110/142 (77%), Gaps = 1/142 (0%)
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNLNIRRVVFY+L KY+G+K++ VP SQVKQIAGRAGRR S+YP GL TT D LDY
Sbjct: 1 MGLNLNIRRVVFYTLMKYDGEKMVSVPASQVKQIAGRAGRRSSVYPHGLATTFMFD-LDY 59
Query: 581 LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDH 640
L +CL +P + +KVGLFP FEQ+E+FA F LL+KF + CR+D +YF+C+HD
Sbjct: 60 LTKCLDEPVKEAEKVGLFPSFEQLEMFATHFPELAFNNLLDKFRDTCRIDDTYFMCQHDS 119
Query: 641 IKKVANMLEKVQGLSLEDRFNF 662
+KKVA+M+E VQGLSL+D + F
Sbjct: 120 MKKVASMIESVQGLSLKDHYIF 141
>gi|401408093|ref|XP_003883495.1| hypothetical protein NCLIV_032500 [Neospora caninum Liverpool]
gi|325117912|emb|CBZ53463.1| hypothetical protein NCLIV_032500 [Neospora caninum Liverpool]
Length = 1735
Score = 187 bits (476), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 144/247 (58%), Gaps = 2/247 (0%)
Query: 258 FCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFME 317
F +E D++ F+ + ADL P ++P AR M R++ H GP NSGKT +A++ +
Sbjct: 595 FLADEHADQLLLFKNLRRLADLRGPAAFYPSARQMSRQLYAHVGPPNSGKTASAVKALLS 654
Query: 318 AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDV 377
A G Y +PLRLLA EV+ ++ G SL+TGQE+++ P H+ CTVE D +
Sbjct: 655 ASTGCYLAPLRLLAWEVYVQLKKEGKRVSLVTGQERQICPDWTHLCCTVETAPLDRRFAC 714
Query: 378 AVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
AV+DE Q+++ A RG AWT A+LGL A+E+H+C + ++ K+ GD Y R
Sbjct: 715 AVLDEAQLVASAQRGDAWTNAILGLQAEELHVCCEERATPLLEKLAKACGDSFAVHVYRR 774
Query: 438 FKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRR 497
P+ V+ + L + R+GDC++ F+R ++ +K +E+ C +YG LPP ++
Sbjct: 775 LSPIRVD-DGPVETLEDFRTGDCLLCFTRLDVLRLKRKLER-LGFQVCAVYGHLPPAIKQ 832
Query: 498 QQANLFN 504
+QA FN
Sbjct: 833 RQARKFN 839
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 53/236 (22%)
Query: 487 IYGALPPETRRQ----------------QANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ A PPET R +A L + + VL+++DAVGMGLNL IRRV
Sbjct: 920 VKTADPPETARSVRILRDLSSAPFAASSRAALSDAPASRKTVLISTDAVGMGLNLEIRRV 979
Query: 531 VFYSLSKYNGDKIIPVP---------------------GSQVKQIAGRAGRR------GS 563
VF+ L K++G P+ G +V IAG RR GS
Sbjct: 980 VFWRLHKFSGTAKRPLTVAELRQLGGRAGRRGRLFGEEGGRVTCIAGEDFRRLKEAFDGS 1039
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT---FCQLL 620
LT L L L+ + +++ G+F ++ +G S + + + L
Sbjct: 1040 SPLAPLTKAALLPSLAQLLAFCDE----LRRGGVFGESRPTDMASGVSSTHVGKFYSEAL 1095
Query: 621 EKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDR--FNFCFAPVNIRDPKA 674
+ F + +D +F+ RH + ++ +L + L L + F F AP+ + P A
Sbjct: 1096 QLFCDLASIDAHFFVPRH-KLNRMLTVLHALSDLPLSRQQLFTFALAPLPLTVPVA 1150
>gi|384500999|gb|EIE91490.1| hypothetical protein RO3G_16201 [Rhizopus delemar RA 99-880]
Length = 158
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 112/158 (70%)
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
M S + DVAVIDEIQM++D RG+AWT+A LGL A +IHLCG+ + + ++ KIC + G
Sbjct: 1 MASLGKPLDVAVIDEIQMIADRDRGWAWTQAFLGLKAKQIHLCGEEAAVPLIEKICRDLG 60
Query: 428 DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVI 487
+E+ YER P V KTL DL V GDCV+AFSR IF+VK +IE T+ C VI
Sbjct: 61 EEVVVNRYERLTPYSVSDKTLRADLSKVEKGDCVIAFSRGGIFDVKRSIEAVTDLKCAVI 120
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
YG+LPPETR QA FND D+ FDVLVASDAVGMGLNL
Sbjct: 121 YGSLPPETRALQAKAFNDPDSGFDVLVASDAVGMGLNL 158
>gi|418292700|ref|ZP_12904631.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064114|gb|EHY76857.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 786
Score = 186 bits (471), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 24/479 (5%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG 342
H +P AR + R+ GPTNSGKT+ +++ A+ GIY SPLRL+A+E +++ ++G
Sbjct: 304 HKLYP-ARRLTRRWTALLGPTNSGKTHRSIEAMAAAEHGIYLSPLRLMALENQERIESMG 362
Query: 343 VYCSLLTGQEKKLVPFSNHIACTVEMVS--TDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
V CSL+TG+E+ + + H TVE + +DV V+DE+QM++D RG+AW AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCYTVEEFARFRHLHWDVVVVDEVQMVADPQRGWAWVDALV 422
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
++ + G + +R +C D+L Q +R P VE L+ + G
Sbjct: 423 SAHTPQLMMTGPALIQPSLRTLCELCEDKLVVQRTKRLSP--VEVARHATTLQRLEPGSL 480
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFSR+ + E+K +E V+YGAL PE RR+QA F ++ E D++VA+DAVG
Sbjct: 481 LVAFSRKLVLELKGMLES-AGKSVSVVYGALSPEVRREQARRF--REGEADIMVATDAVG 537
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580
MGLNL + FY+ K++G + + +VKQI GRAGR G + G T L+ L
Sbjct: 538 MGLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGH-HNSGEITALDPQTLKS 596
Query: 581 LIECLKQPFEVV--KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRH 638
+ P V + + P + + + + + + F N ++
Sbjct: 597 IRRLFNSPDAPVDLSQFQVRPSIDHLAAISELMGEPSLLRAWLTFNRNINYGEAFISVLP 656
Query: 639 DHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR-DPKAMYHLLRFASSYSKNAPVSIAMGM 697
D + + +++ + + L R+ F P+ D A H A + K A+ M
Sbjct: 657 DELAEWIELIDDPK-IPLWLRWTFACTPIRGGFDSPASQH----AQRWIKRVAEGHAIPM 711
Query: 698 PKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
PK +D L LE+ V+ YL L+ E FP E D +LL ++T
Sbjct: 712 PKLLLGSD--LASLESTLHVVETYLHLARSLPEH-FPEHDDGE----DARKLLNDAITR 763
>gi|221488613|gb|EEE26827.1| helicase, putative [Toxoplasma gondii GT1]
Length = 1781
Score = 185 bits (470), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 148/254 (58%), Gaps = 2/254 (0%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L + F + D++ F+ + ADL P +FP AR M R++ H GP NSGKT N
Sbjct: 635 LLALARRFLADRHADQLLLFKNLRRLADLRGPAGFFPSARHMPRQVYAHVGPPNSGKTAN 694
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
A++ A G Y +PLRLLA EV+ ++ G +L+TGQE+ + H+ CTVEM
Sbjct: 695 AVEALRNASTGCYLAPLRLLAWEVYVQLKREGKRVALVTGQERVVCEGWTHLCCTVEMAP 754
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
D + AV+DE Q+++++ RG AWT ALLGL A+E+H+C + L ++ + E GD
Sbjct: 755 LDRRFACAVLDEAQLLANSQRGDAWTNALLGLQAEELHVCSEVRALHLLETLAQECGDRF 814
Query: 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490
+ Y+R P+ V+A + L ++ +GDC++ F+R ++ +K +E H C +YG
Sbjct: 815 VGRVYQRLSPISVDAGP-VARLEDLETGDCLLCFTRLDVLRLKRKLEL-LGFHVCAVYGH 872
Query: 491 LPPETRRQQANLFN 504
LPP +++QA FN
Sbjct: 873 LPPAIKQRQARKFN 886
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--GL 569
+L+++DAVGMGLNL+IRRVVF+ L K++G P+ S+++Q+ GRAGRRG ++ + G
Sbjct: 1006 ILISTDAVGMGLNLDIRRVVFWRLQKFSGTTKRPLTVSELRQLGGRAGRRGRVFGEEGGR 1065
Query: 570 TTTLNLDDLDYLIECLK--QPFEVVKKVGLFPFFEQVELFA---------------GQLS 612
T + +D L + P +KK L P Q+ F G+ +
Sbjct: 1066 VTCMEGEDFLRLKAAFESASPLSPLKKAALLPPMAQLVRFCEELRRGGLLCESAGRGETN 1125
Query: 613 NYT-------FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL--EDRFNFC 663
++ + + ++ F + +D ++F+ RH + ++ +L + L L + F F
Sbjct: 1126 GFSSRHVGSFYAEAIQLFCDLASVDDAFFVPRH-KLNRMLTVLHALADLPLSRQQLFTFA 1184
Query: 664 FAPVNIRDPKA 674
AP+ + P A
Sbjct: 1185 LAPLPLSTPLA 1195
>gi|237837649|ref|XP_002368122.1| helicase, putative [Toxoplasma gondii ME49]
gi|211965786|gb|EEB00982.1| helicase, putative [Toxoplasma gondii ME49]
gi|221509112|gb|EEE34681.1| helicase, putative [Toxoplasma gondii VEG]
Length = 1779
Score = 185 bits (469), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 148/254 (58%), Gaps = 2/254 (0%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L + F + D++ F+ + ADL P +FP AR M R++ H GP NSGKT N
Sbjct: 635 LLALARRFLADRHADQLLLFKNLRRLADLRGPAGFFPSARHMPRQVYAHVGPPNSGKTAN 694
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
A++ A G Y +PLRLLA EV+ ++ G +L+TGQE+ + H+ CTVEM
Sbjct: 695 AVEALRNASTGCYLAPLRLLAWEVYVQLKREGKRVALVTGQERVVCEGWTHLCCTVEMAP 754
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
D + AV+DE Q+++++ RG AWT ALLGL A+E+H+C + L ++ + E GD
Sbjct: 755 LDRRFACAVLDEAQLLANSQRGDAWTNALLGLQAEELHVCSEVRALHLLETLAQECGDRF 814
Query: 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490
+ Y+R P+ V+A + L ++ +GDC++ F+R ++ +K +E H C +YG
Sbjct: 815 VGRVYQRLSPISVDAGP-VARLEDLETGDCLLCFTRLDVLRLKRKLEL-LGFHVCAVYGH 872
Query: 491 LPPETRRQQANLFN 504
LPP +++QA FN
Sbjct: 873 LPPAIKQRQARKFN 886
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 29/191 (15%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD--GL 569
VL+++DAVGMGLNL IRRVVF+ L K++G P+ S+++Q+ GRAGRRG ++ + G
Sbjct: 1006 VLISTDAVGMGLNLEIRRVVFWRLQKFSGTTKRPLTVSELRQLGGRAGRRGRVFGEEGGR 1065
Query: 570 TTTLNLDDLDYLIECLK--QPFEVVKKVGLFPFFEQVELFA---------------GQLS 612
T + +D L + P +KK L P Q+ F G+ +
Sbjct: 1066 VTCMEGEDFLRLKAAFESASPLSPLKKAALLPPMAQLVRFCEELRRGGLLCESAGRGETN 1125
Query: 613 NYT-------FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL--EDRFNFC 663
++ + + ++ F + +D ++F+ RH + ++ +L + L L + F F
Sbjct: 1126 GFSSRHVGSFYAEAIQLFCDLAAVDDAFFVPRH-KLNRMLTVLHALADLPLSRQQLFTFA 1184
Query: 664 FAPVNIRDPKA 674
AP+ + P A
Sbjct: 1185 LAPLPLSTPLA 1195
>gi|70944747|ref|XP_742271.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521155|emb|CAH82418.1| hypothetical protein PC000387.05.0 [Plasmodium chabaudi chabaudi]
Length = 442
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 151/254 (59%), Gaps = 4/254 (1%)
Query: 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310
L IF+ F + + + + + D T+ + + RK+ + GPTNSGKT+
Sbjct: 181 LLTIFLSFIKRYYHKQWIFYEHIKKLCDFTEINEIRKMKNNLNRKLYLYVGPTNSGKTHE 240
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
A +F+++K G+YCSPLRLL E+ K+ L +LLTGQE S H CT+EM
Sbjct: 241 AFNKFIDSKNGLYCSPLRLLTWEIHKKLLNLKKSANLLTGQEIIKKANSTHTVCTIEMTP 300
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL 430
+E YD A+IDEIQM++++ RGYAWT L+ L +EI+LCG ++++++++ D++
Sbjct: 301 LNEKYDCAIIDEIQMINNSIRGYAWTHVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQV 360
Query: 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490
+ ++R L +E + L +V++G C+++FSR I +K +EK N VIYG
Sbjct: 361 IIKRFKRLNKLKLEKN--IQPLDDVKTG-CIISFSRNNIMLLKNKLEK-LNKRVFVIYGT 416
Query: 491 LPPETRRQQANLFN 504
LPPE++++Q LFN
Sbjct: 417 LPPESKKKQIELFN 430
>gi|340506600|gb|EGR32704.1| dpse - suppressor of 3-like 1, putative [Ichthyophthirius
multifiliis]
Length = 412
Score = 176 bits (446), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 169/311 (54%), Gaps = 25/311 (8%)
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH 434
+D+A+IDEIQ +++ RG AWT LLGL A EIHLCGD S +D+V+ IC GD+
Sbjct: 3 FDIAIIDEIQQINNEERGSAWTTTLLGLKAKEIHLCGDSSAIDIVQNICKTQGDDFECYQ 62
Query: 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN--------HHCCV 486
YER L V + ++++ GDC + FS +IF ++ I +N ++C +
Sbjct: 63 YERMSELKVRKDEYKLN-QDLKEGDCFICFSINDIFALQKKINDISNQKFKTCKINYCSI 121
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
IYG P E + QQA+LFN Q N+F L+++DA+GMG+NLNI+R+VF ++ K + + +
Sbjct: 122 IYGRQPFEIKIQQADLFNSQQNKF--LISTDAIGMGINLNIKRIVFTNIYKLQQNVMNRL 179
Query: 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL----KQPFEVVKKVGLFPFFE 602
S ++QIAGRAGR +G D + + + L Q + K + P F+
Sbjct: 180 DFSAIQQIAGRAGRYQ---ENGEVCAFYQDQIRIIQKALNDQSNQNRQQKIKAAIEPSFD 236
Query: 603 QV----ELFAGQLSNYTF--CQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSL 656
Q+ L N +F + +KF E +D YF ++ N+++K LSL
Sbjct: 237 QILETKSLLEQIYPNRSFNLIDIFQKFAELSCIDDIYFYSSCQDMQFRLNLIQKY-NLSL 295
Query: 657 EDRFNFCFAPV 667
ED++ F P+
Sbjct: 296 EDQYRFGKCPI 306
>gi|444725157|gb|ELW65735.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Tupaia
chinensis]
Length = 619
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 152/270 (56%), Gaps = 35/270 (12%)
Query: 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
L GL A+E+HLCG+ + +D+V ++ TG+E+ + Y+R P+ V + L L N+R
Sbjct: 239 GLDGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRTYDRLTPISVLDRAL-ETLDNLRP 297
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
GDC+V FS+ +I+ V IE VIYG+LPP T+ QA FND D+ +LVA+D
Sbjct: 298 GDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQAKKFNDPDDPCKILVATD 356
Query: 518 AVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
A+GMGLNL+I+R++FYSL K + G++ I P+ SQ QIAGRAGR S + +G TT
Sbjct: 357 AIGMGLNLSIKRIIFYSLMKPSINEKGEREIEPITTSQALQIAGRAGRFSSQFKEGEVTT 416
Query: 573 LNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS 632
+N +DL L E L +P + ++ + F F QV DG
Sbjct: 417 MNREDLGLLKEILNRPVDPIRDI--FVDFSQV-------------------------DGQ 449
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
YF+C D K A +++ + LSL + F
Sbjct: 450 YFVCNMDDFKFSAELIQHIP-LSLRVSYRF 478
>gi|255597590|ref|XP_002536808.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223518473|gb|EEF25574.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 404
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 146/265 (55%), Gaps = 12/265 (4%)
Query: 246 DAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
D ++ VE +EE E R +S +L + F AR MKRK I GPTNS
Sbjct: 141 DRIRMRLEHAVEREMEEQHAERTR-----QSINLAEYPASFDVARRMKRKFIAVLGPTNS 195
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY-----CSLLTGQEKKLVPFSN 360
GKT+ A++ +A G+Y +PLRLLA+E ++++ + + SL+TG+E++LVP +
Sbjct: 196 GKTHMAMEALGKAPSGVYLAPLRLLALENYERLQEMQQHGQPLKVSLVTGEERRLVPGAT 255
Query: 361 HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVR 420
H+A TVEM+ T DVAVIDEIQM+SD RG AWT A+ G A ++L G P +
Sbjct: 256 HVASTVEMLDTQTPVDVAVIDEIQMLSDRDRGAAWTAAVCGAPARVVYLVGAPEARRAIE 315
Query: 421 KICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHT 480
+ + EL +R PL +E + + L N+R GD V+ FSRRE+ + + +
Sbjct: 316 VLAARLECELEVHLLKRKGPLTME-PSAVRKLSNLRRGDAVICFSRREVLMWRDMVTE-M 373
Query: 481 NHHCCVIYGALPPETRRQQANLFND 505
+YG L PE RR QA F +
Sbjct: 374 GLSVATVYGNLSPEVRRAQAQRFRE 398
>gi|413918549|gb|AFW58481.1| hypothetical protein ZEAMMB73_323635 [Zea mays]
Length = 123
Score = 161 bits (407), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/102 (65%), Positives = 85/102 (83%)
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
++ + DLT PHTW+P R M+R+++YHCGPTNSGKT+NAL F AK G+YCSPLRLLA+
Sbjct: 11 LMATTDLTAPHTWYPSTRAMRRRVVYHCGPTNSGKTHNALASFSAAKSGVYCSPLRLLAI 70
Query: 333 EVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM 374
E+FDKVNA GV CSL TGQE K V F++H+ACT+EMVST+E+
Sbjct: 71 EIFDKVNATGVSCSLRTGQEVKEVAFASHLACTIEMVSTEEI 112
>gi|262277942|ref|ZP_06055735.1| ATP-dependent helicase [alpha proteobacterium HIMB114]
gi|262225045|gb|EEY75504.1| ATP-dependent helicase [alpha proteobacterium HIMB114]
Length = 823
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 175/347 (50%), Gaps = 38/347 (10%)
Query: 288 FARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYC 345
++ +I+ GPTN+GKT+ A++R +E G+ PLRLLA EV+DK VN +G
Sbjct: 1 MTQITNSQILAILGPTNTGKTFLAIERMLEHGNGVMGFPLRLLAREVYDKIVNRIGPERV 60
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD 405
+L+TG+EK + P S++ CTVE + D ++ IDEIQM +D RG+ +T LL D
Sbjct: 61 ALVTGEEKIIPPKSDYYLCTVESMPLDINFEFVAIDEIQMCADPERGHIFTDRLLNFRGD 120
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
++ + D ++K+ + E + ER L + ++ ++AFS
Sbjct: 121 KLTMFLGS---DTIKKLITTLVPETEFIYRERLSKLTYSG---YKKISRIKPRSAIIAFS 174
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+++ + + + V+ G+L P+TR Q +++ Q + D L+A+DA+GMG+N+
Sbjct: 175 VDDVYALAEFVRRQKGG-AAVVMGSLSPKTRNSQVDIY--QSGDVDFLIATDAIGMGINM 231
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+I V F L KY+G +I + S++ QI+GRAGR + G T EC
Sbjct: 232 DIENVYFSGLKKYDGKQIRNLRDSEIGQISGRAGRYMNDGSFGTTG-----------ECE 280
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS 632
K E ++K L N+ F +L F N LD S
Sbjct: 281 KLTDEQIEK----------------LENHKFDDVLNIFWRNSELDFS 311
>gi|114800036|ref|YP_762088.1| putative helicase [Hyphomonas neptunium ATCC 15444]
gi|114740210|gb|ABI78335.1| putative helicase [Hyphomonas neptunium ATCC 15444]
Length = 957
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 144/264 (54%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCS--LLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV+D+V A Y S L+TG+E+ P
Sbjct: 8 LGPTNTGKTHYAIERMLGHGTGMIGLPLRLLAREVYDRVVAAKGYASAALITGEERISPP 67
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVL 416
+ + CTVE + TD D IDEIQ+ D RG+ +T +L + + E L G
Sbjct: 68 TARYFICTVESMPTDIRPDFLAIDEIQLAEDDDRGHVFTDRILNMRGNHETLLLG----A 123
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
D +R + E + + ERF L T + L +V FS E++ + +
Sbjct: 124 DTMRGLLRELKLGVETEPRERFSELRYTGHTKITKLPKR---TAIVGFSAEEVYAIAELL 180
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q L+ Q E D +VA+DA+GMGLNL++ RVVF S S
Sbjct: 181 RRQKGG-AAVVMGALSPRTRNAQVALY--QSGEVDYIVATDAIGMGLNLDVERVVFASRS 237
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + P+ ++ QIAGRAGR
Sbjct: 238 KFDGRRHRPLSLAECGQIAGRAGR 261
>gi|330813500|ref|YP_004357739.1| ATP-dependent DNA helicase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486595|gb|AEA81000.1| ATP-dependent DNA helicase [Candidatus Pelagibacter sp. IMCC9063]
Length = 823
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 156/272 (57%), Gaps = 11/272 (4%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLL 348
+M ++II GPTN+GKT+ A++R ++ + G+ PLRLLA EV+DK V LG +L+
Sbjct: 1 MMNQQIISVLGPTNTGKTHFAVERMLQFETGVIGFPLRLLAREVYDKCVQKLGSNNVALI 60
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
TG+EK + P +N+ CTVE + D ++ IDEIQM +D RG+ +T LL D++
Sbjct: 61 TGEEKIIPPTANYYLCTVESMPLDLNFEFVGIDEIQMCADPERGHIFTDRLLNYRGDKLT 120
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
+ D+++ I S+ + +R L+ + ++ +VAFS E
Sbjct: 121 MFLGA---DIMKNIISDLVPSSEFVYRDRLSKLIYTGHK---KISRIQPRSAIVAFSVDE 174
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + ++ G+L P+TR Q L+ Q + D LVA+DA+GMG+N++I
Sbjct: 175 VYALAEFVRRQRGG-AAIVMGSLSPKTRNSQVELY--QSGDVDFLVATDAIGMGINMDID 231
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F S+ KY+G KI + +++ QI+GRAGR
Sbjct: 232 HVSFNSIRKYDGKKIRGLRNTEIGQISGRAGR 263
>gi|389862054|ref|YP_006364294.1| helicase domain-containing protein [Modestobacter marinus]
gi|388484257|emb|CCH85791.1| Helicase domain protein [Modestobacter marinus]
Length = 594
Score = 159 bits (403), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 12/280 (4%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY 344
P +++H GPTNSGKTY +LQ A G+Y +PLR LA E + K++A L
Sbjct: 48 LPTRATRPEHVVFHLGPTNSGKTYESLQALAAAGSGVYAAPLRQLAHEAYAKLSAQLPAG 107
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
L+ E+++ P + + CTVE + + V+DE ++DA RG+ W R LL
Sbjct: 108 TVGLSTGEEEIDPNAPIVCCTVE--KAPDRGRMLVLDEAHWVTDADRGHHWARLLLTGEY 165
Query: 405 DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR--NVRSGDCVV 462
E+HL V++ + ++ +++ +++R L V L G +R VR VV
Sbjct: 166 QEMHLISAAEAYLVLKPLVAD-AEQVEVVNHKRLSRLDV----LRGPVRPDAVRPQTLVV 220
Query: 463 AFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522
AFSR+ ++ V +++H V+YGALPP TRR+ F E DVLV +D +G G
Sbjct: 221 AFSRKTVYAVAAELDQHRAGKVGVLYGALPPATRREVIERFT--TGELDVLVTTDVIGHG 278
Query: 523 LNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
+N+ V+F +K++G ++ P+ + QIAGRAGR G
Sbjct: 279 INVPATTVLFAETTKFDGQELRPLRTWEAAQIAGRAGRYG 318
>gi|407773998|ref|ZP_11121298.1| ATP-dependent helicase MgpS [Thalassospira profundimaris WP0211]
gi|407283444|gb|EKF08985.1| ATP-dependent helicase MgpS [Thalassospira profundimaris WP0211]
Length = 977
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/478 (27%), Positives = 230/478 (48%), Gaps = 34/478 (7%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQE 352
+I+ GPTN+GKT+ A++R + G+ PLRLLA E +D+ V +G +L+TG+E
Sbjct: 10 RILAILGPTNTGKTHLAMERMLAHTTGMIGFPLRLLARENYDRAVAKVGKGAVALITGEE 69
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ L + + CTVE + + D IDEIQM +D RG+ +T LL E G
Sbjct: 70 RILPKTARYFLCTVEAMPVAKQVDFLAIDEIQMCADPERGHVFTDRLLHARGRHETMFMG 129
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ V+RK+ D + ERF L ++ + S VV FS +E++
Sbjct: 130 AETIRPVIRKLV----DNVEFDRRERFSTLTYNGAK---KIQRLPSQSAVVTFSAQEVYA 182
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
V + + V+ GAL P TR Q +F Q+ E + L+A+DA+GMGLNL++ V
Sbjct: 183 VAELVRRQKGG-AAVVLGALSPRTRNAQVEMF--QNGEVEHLIATDAIGMGLNLDLNHVA 239
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
F +++K++G + ++ QIAGRAGR + G+T L+ D D + + + FE
Sbjct: 240 FAAMTKFDGKFNRGLTAAETAQIAGRAGRHMNDGTFGVTGNLSGIDPDIIEQIEEHEFEP 299
Query: 592 VKKV---GLFPFFEQVELFAGQL---SNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645
+ KV F V+ L S+ L + + LD L R++ + ++A
Sbjct: 300 LAKVFWRNARLDFRTVDALQKSLRRRSDDPTLILAREPVDEIMLD---HLARNEDVARIA 356
Query: 646 NMLEKVQGLSLEDRFNFCFAP--VNIRD---PKAMYHLLRFASSYSKNAPVSIAMGMPKG 700
++VQ L + C P NI P+ + + R+ + P+
Sbjct: 357 TAPDRVQLL-----WEICQIPDFRNIHTDAHPRLLTSIYRYLAKPGSKLPIDWLGEQILR 411
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQ--FKEEVFPYAKKAEAMATDIAELLGQSLTN 756
+ D ++ L ++ + ++ ++SH+ + E+ + ++ A+ ++++L + LT
Sbjct: 412 LDRYDGDIDQLSSRLAGIRVWTYVSHKHHWLEDANHWQERTRAIEDKLSDVLHERLTQ 469
>gi|349699944|ref|ZP_08901573.1| DNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 870
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 158/283 (55%), Gaps = 20/283 (7%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-L 341
H P + + R ++ GPTN+GKT+ A++R + GI PLRLLA E +D++ A
Sbjct: 18 HGSGPHSDTLVRAVL---GPTNTGKTHLAIERLLSHSSGIIGFPLRLLARENYDRMVAEK 74
Query: 342 GVYC-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
G + +L+TG+EK + P + +CTVE + D + +DEIQ+ +D RG+ +T LL
Sbjct: 75 GAHAVALITGEEKIIPPKARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLL 134
Query: 401 ---GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
GL E G ++ +++R++ G E+ +H R L L L RS
Sbjct: 135 HARGL--SETMFLGADTIRNLIRRLVP--GIEI--EHRPRLSQLTHAGACKLTRL-PPRS 187
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
+VAFS E++ + + + C ++ G L P TR Q L+ Q+ E D LVA+D
Sbjct: 188 --AIVAFSAGEVYAIAELLRRRRGG-CAIVMGQLSPRTRNAQVALY--QEKEVDYLVATD 242
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
A+GMGLN+++ V F SLSK++G +I P+ ++ Q+AGRAGR
Sbjct: 243 AIGMGLNMDVNHVAFASLSKFDGTRIRPLAAGEIAQVAGRAGR 285
>gi|162147813|ref|YP_001602274.1| helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209542436|ref|YP_002274665.1| helicase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786390|emb|CAP55972.1| putative helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530113|gb|ACI50050.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 890
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 150/266 (56%), Gaps = 19/266 (7%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA E ++++ A +L+TG+EK + P
Sbjct: 31 GPTNTGKTHLAIERLLAHSSGIIGFPLRLLARENYERMVAAKGAASVALITGEEKIVPPN 90
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSV 415
+ +CTVE + D+M + +DEIQ+ +D RG+ +T LL GL+ E G ++
Sbjct: 91 ARWFSCTVEAMPLDQMAEFVAVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGAETI 148
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD-LRNVRSGDCVVAFSRREIFEVKM 474
++R++ G E+ +P + + L G L + +VAFS E++ +
Sbjct: 149 RPLLRRLVP--GVEIES------RPRLSQLTHLGGSKLTRLPPRSAIVAFSATEVYAIAE 200
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + C V+ G L P TR Q L+ QD E D LVA+DA+GMGLN+++ V F
Sbjct: 201 LIRRRRGG-CAVVMGQLSPRTRNAQVALY--QDREVDYLVATDAIGMGLNMDVNHVAFAG 257
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
LSK++G + P+ +++ QIAGRAGR
Sbjct: 258 LSKFDGARARPLSPAEIAQIAGRAGR 283
>gi|83859716|ref|ZP_00953236.1| ATP-dependent DNA helicase [Oceanicaulis sp. HTCC2633]
gi|83852075|gb|EAP89929.1| ATP-dependent DNA helicase [Oceanicaulis sp. HTCC2633]
Length = 937
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 161/310 (51%), Gaps = 13/310 (4%)
Query: 289 ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALG-VYCS 346
AR +I GPTN+GKT+ AL+R M G++ PLRLLA E++DKV A G +
Sbjct: 4 ARAGDHRIAAILGPTNTGKTHLALERMMAHGTGVFGLPLRLLARELYDKVVKAKGPASVA 63
Query: 347 LLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMAD 405
L+TG+EK + P + + CTVE + + +DEIQ+ +D RG+ +T R L
Sbjct: 64 LITGEEKIVPPTARYFLCTVEAMPLNMRPAFLAVDEIQLAADPERGHIFTDRLLHARGTQ 123
Query: 406 EIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
E G ++ ++R + E E+ E+ ERF L L L RS +VAFS
Sbjct: 124 ETLFLGAATMRPILRHLIPEA--EIEER--ERFSTLSYAGAKKLTKLPR-RS--AIVAFS 176
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+++ + + + V+ GAL P TR Q L+ Q E D L+A+DA+GMGLN+
Sbjct: 177 SEDVYSIAELVRRQRGG-AAVVMGALSPRTRNAQVELY--QSGEVDFLIATDAIGMGLNM 233
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
++ V F S SK++G K + +V QIAGRAGR S G T D D +
Sbjct: 234 DVDHVAFASYSKFDGRKRRRLFPQEVGQIAGRAGRFRSDGTFGETADARPLDPDIIERVE 293
Query: 586 KQPFEVVKKV 595
FE +KK+
Sbjct: 294 DHEFEPIKKL 303
>gi|116246424|ref|XP_001230325.1| Anopheles gambiae str. PEST AGAP012862-PA [Anopheles gambiae str.
PEST]
gi|116133432|gb|EAU78020.1| AGAP012862-PA [Anopheles gambiae str. PEST]
Length = 421
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 177/338 (52%), Gaps = 14/338 (4%)
Query: 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD 459
+G+ A +++ G P + ++R+I D L E ER PL + + LR++ +GD
Sbjct: 1 MGVPARHLYILGAPDCIPLIRRIAELCDDPLDEITLERKSPLRAASAPV--RLRDLEAGD 58
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
++AFSRRE+ +++ + V+YGAL PE RR +A FN+ E ++LVA+DA+
Sbjct: 59 ALIAFSRREVLDLRAELLT-LGKRVAVVYGALSPEVRRAEAARFNN--GEAEILVATDAI 115
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-LDDL 578
GMGLNL+I+RVVF +L KY+G + + ++KQI GRAGR G + +G+ L
Sbjct: 116 GMGLNLSIKRVVFSALRKYDGKQTRDLTAQEIKQIGGRAGRYGH-HENGIVAVLGEAGTP 174
Query: 579 DYLIECLKQPFEVVKKVGLF--PFFEQVELFAGQLSNYTFCQLLEKFGENCRL--DGSYF 634
++ + L P E + ++ P + V A ++ + +L + D +Y
Sbjct: 175 AHIRKMLAAPPEPITELRPLVQPDSDIVRAVAEEIETDSLYGVLVRIKRAVLRADDPNYR 234
Query: 635 LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYS--KNAPVS 692
L D ++A+ LE V+GLSL R+ + P++ RD + L+ +AS ++ + P
Sbjct: 235 LADMDQAFEIASALEGVEGLSLTQRWVYAMCPIDERD-NGIARLVGWASDHAAGRRVPPP 293
Query: 693 IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKE 730
+ + S EL E +H+ L + WLS +F +
Sbjct: 294 GTGRLVQPSQAGREELERAEKRHKRLVAWRWLSLRFAD 331
>gi|406706852|ref|YP_006757205.1| helicase family protein [alpha proteobacterium HIMB5]
gi|406652628|gb|AFS48028.1| helicase family protein [alpha proteobacterium HIMB5]
Length = 827
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 149/270 (55%), Gaps = 11/270 (4%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTG 350
K KI GPTN+GKT+ A++ + + GI PLRLLA EV++KV +L+TG
Sbjct: 3 KNKITAVLGPTNTGKTHLAIETMLSFESGIIGFPLRLLAREVYEKVIKKVSLDKVALITG 62
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
+EK + P + + CTVE + D++ D +DEIQM +D RG+ +T LL + +++ +
Sbjct: 63 EEKIIPPNAKYFLCTVESMPIDKLVDFVGVDEIQMCADHERGHIFTDRLLNMRGEKLTML 122
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
+ ++ I S D++ + ER L + + ++AFS E++
Sbjct: 123 MGS---NTIKNIISNLDDDIEFINRERLSKLTYAGHK---KISRINRKTAIIAFSAEEVY 176
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ G+L P+TR Q L+ Q + D LVA+DA+GMG+N+++ V
Sbjct: 177 AIAELIRRQKGG-AAVVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDLDYV 233
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +L K++G K+ + S++ QIAGRAGR
Sbjct: 234 YFSNLKKFDGKKLRKLSLSEIGQIAGRAGR 263
>gi|379736251|ref|YP_005329757.1| putative helicase [Blastococcus saxobsidens DD2]
gi|378784058|emb|CCG03726.1| Putative helicase [Blastococcus saxobsidens DD2]
Length = 603
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 149/279 (53%), Gaps = 10/279 (3%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY 344
P V ++++H GPTNSGKTY +LQ G+Y +PLR LA E + K++A L
Sbjct: 51 LPMRTVRPTEVVFHLGPTNSGKTYESLQALAATGSGVYAAPLRQLAHEAYAKLSAQLPPG 110
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
L+ E+++ P++ + CTVE ++ V+DE ++D RG+ W R LL
Sbjct: 111 TVGLSTGEEEIDPYAPIVCCTVEKAPL--RGELLVLDESHWIADPDRGHHWARLLLTGEY 168
Query: 405 DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-VVEAKTLLGDLRNVRSGDCVVA 463
E+HL +++ + S+ + + +++R L V+ A D VR VVA
Sbjct: 169 REMHLISAAEAYLLLKPLVSDA-EHVTVVNHKRLSRLDVLRAPVRPAD---VRPQTLVVA 224
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FSR+ ++ +++H V+YGALPP TRR+ F E +VLV +D +G G+
Sbjct: 225 FSRKTVYAAAAELDQHRPGKVGVLYGALPPATRREVIERFT--SGEVEVLVTTDVIGHGI 282
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
N+ V+F +K++G K+ P+ + QIAGRAGR G
Sbjct: 283 NVPATTVLFAETTKFDGTKVRPLRSWETAQIAGRAGRYG 321
>gi|56696301|ref|YP_166658.1| helicase [Ruegeria pomeroyi DSS-3]
gi|56678038|gb|AAV94704.1| helicase, putative [Ruegeria pomeroyi DSS-3]
Length = 959
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 147/271 (54%), Gaps = 17/271 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I+ GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ AL +L+TG+E
Sbjct: 6 RIVAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHL 409
+ + P + + CTVE + D +DEIQ+ +D RG+ +T LL GL E L
Sbjct: 66 RIVPPRTQYWVCTVEAMPEGLGADCVAVDEIQLCADPERGHVFTDRLLRARGL--HETLL 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G D +R + E ER LV + + +V FS +
Sbjct: 124 LGS----DTMRGPIAALVPEAQFVRRERMSQLVYTGSK---KITRMPPRSAIVGFSVENV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + V+ GAL P TR Q +L+ Q+ E D LVA+DA+GMGLNL+I
Sbjct: 177 YAIAELIRRQKGG-AAVVMGALSPRTRNAQVDLY--QNGEVDYLVATDAIGMGLNLDIDH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F +LSK++G ++ P+ +++ QIAGRAGR
Sbjct: 234 VAFSALSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|91762441|ref|ZP_01264406.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718243|gb|EAS84893.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
Length = 826
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 151/272 (55%), Gaps = 15/272 (5%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTG 350
K KI GPTN+GKTY A++ + G+ PLRLLA EV+DK+ +L+TG
Sbjct: 3 KNKITAVLGPTNTGKTYLAIETMLSFDSGMIGFPLRLLAREVYDKIIKKISSDKVALITG 62
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
+EK + P + + CTVE + ++ D IDEIQM +D RG+ +T LL L +++ +
Sbjct: 63 EEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMF 122
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG--DLRNVRSGDCVVAFSRRE 468
S ++KI ++ ++ + ER L T +G + + ++AFS E
Sbjct: 123 MGSST---IKKIVNKLNEDTEFINRERLSKL-----TYVGHKKISRINRKTAIIAFSTEE 174
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + ++ G+L P+TR Q L+ Q + D LVA+DA+GMG+N+++
Sbjct: 175 VYAIAELVRRQKGG-AAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDLE 231
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F +L K++G K+ + S++ QIAGRAGR
Sbjct: 232 NVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGR 263
>gi|71083132|ref|YP_265851.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062245|gb|AAZ21248.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1062]
Length = 826
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 152/273 (55%), Gaps = 17/273 (6%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTG 350
K KI GPTN+GKTY A++ + G+ PLRLLA EV+DK+ +L+TG
Sbjct: 3 KNKITAVLGPTNTGKTYLAIETMLSFDSGMIGFPLRLLAREVYDKIIKKISSDKVALITG 62
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL- 409
+EK + P + + CTVE + ++ D IDEIQM +D RG+ +T LL L +++ +
Sbjct: 63 EEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMF 122
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG--DLRNVRSGDCVVAFSRR 467
G ++ ++V K+ +T + ER L T +G + + ++AFS
Sbjct: 123 MGSSTIKNIVNKLNEDT----EFINRERLSKL-----TYVGHKKISRINRKTAIIAFSTE 173
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
E++ + + + ++ G+L P+TR Q L+ Q + D LVA+DA+GMG+N+++
Sbjct: 174 EVYAIAELVRRQKGG-AAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDL 230
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F +L K++G K+ + S++ QIAGRAGR
Sbjct: 231 ENVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGR 263
>gi|296115141|ref|ZP_06833782.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978242|gb|EFG84979.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
Length = 903
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 148/263 (56%), Gaps = 13/263 (4%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GV-YCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA E +D++ A GV +L+TG+EK + P
Sbjct: 48 GPTNTGKTHLAIERMLAHASGIIGFPLRLLARENYDRMVARKGVGAVALITGEEKIVPPN 107
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLD 417
+ +CTVE + D +DEIQ+ +D RG+ +T LL E G ++
Sbjct: 108 ARWFSCTVEAMPLDRRVAFVAVDEIQLCADPDRGHIFTDRLLHARGQVETMFLGADTIRP 167
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
++R++ G E+ +H R L A T L + +VAFS E++ + I
Sbjct: 168 LLRRLVP--GIEI--EHRPRLSHL---AYTGASKLTRLPPRSAIVAFSAAEVYAIAELIR 220
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ C ++ G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++ V F SLSK
Sbjct: 221 RRRGG-CAIVMGQLSPRTRNAQVALY--QNKEVDYLVATDAIGMGLNMDVNHVAFASLSK 277
Query: 538 YNGDKIIPVPGSQVKQIAGRAGR 560
++G ++ P+ +++ Q+AGRAGR
Sbjct: 278 FDGTRMRPLTPAEIAQVAGRAGR 300
>gi|349686997|ref|ZP_08898139.1| DNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 845
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 150/265 (56%), Gaps = 17/265 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVYC-SLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA E +D++ A G + +L+TG+EK + P
Sbjct: 8 GPTNTGKTHLAIERLLSHSSGIIGFPLRLLARENYDRMVAKKGEHAVALITGEEKIIPPK 67
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSV 415
+ +CTVE + D + +DEIQ+ +D RG+ +T LL GL E G ++
Sbjct: 68 ARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLLHARGL--SETMFLGADTI 125
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
++R++ G E+ +H R L L L RS +VAFS E++ +
Sbjct: 126 RHLIRRLVP--GIEI--EHRPRLSQLTHAGACKLTRL-PPRS--AIVAFSAGEVYAIAEL 178
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ + C ++ G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++ V F SL
Sbjct: 179 LRRRRGG-CAIVMGQLSPRTRNAQVALY--QEKEVDYLVATDAIGMGLNMDVNHVAFASL 235
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SK++G +I P+ ++ Q+AGRAGR
Sbjct: 236 SKFDGTRIRPLTAGEIAQVAGRAGR 260
>gi|365854506|ref|ZP_09394578.1| helicase protein, partial [Acetobacteraceae bacterium AT-5844]
gi|363720047|gb|EHM03339.1| helicase protein, partial [Acetobacteraceae bacterium AT-5844]
Length = 846
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 154/286 (53%), Gaps = 31/286 (10%)
Query: 284 TWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG 342
T FP ARV K I GPTN+GKT+ A+ R + GI PLRLLA E +D+ V A G
Sbjct: 12 TMFP-ARV---KAI--LGPTNTGKTHLAITRMLAHASGIIGFPLRLLARENYDRMVAAKG 65
Query: 343 V-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL- 400
Y +L+TG+EK + P + ACTVE + D + +DEIQ+ +D RG+ +T LL
Sbjct: 66 ARYVALITGEEKIVPPEAKWFACTVEAMPLDRKAEFVAVDEIQLCADPDRGHIFTDRLLH 125
Query: 401 --GLMADEIHLCGDPSVLDVVRKICS----ETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
GL+ E G ++ +++++ ET L + Y AK L
Sbjct: 126 ARGLV--ETMFLGAETIRPLLQRLVPQAEIETRPRLSQLEY------AGPAK-----LTR 172
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+ VVAFS E++ + AI + C V+ G L P TR Q L+ Q+ E D LV
Sbjct: 173 LPPRSAVVAFSAGEVYAIAEAIRRRRGG-CAVVMGRLSPRTRNAQVALY--QNREVDFLV 229
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
A+DA+GMGLN+++ V F SL K++G + P+ + QIAGRAGR
Sbjct: 230 ATDAIGMGLNMDVDHVAFASLQKFDGHRPRPLTAQEAAQIAGRAGR 275
>gi|330993481|ref|ZP_08317416.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
gi|329759511|gb|EGG76020.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
Length = 897
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 147/263 (55%), Gaps = 13/263 (4%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA E +D++ A +L+TG+EK + P
Sbjct: 59 GPTNTGKTHLAIERLLSHGSGIIGFPLRLLARENYDRMVARKGAQAVALITGEEKIVPPN 118
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVLD 417
+ +CTVE + D + +DEIQ+ +D RG+ +T R L E G ++ +
Sbjct: 119 ARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLLHARGTAETMFLGADTIRN 178
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
++R++ G E+ +H R L L L RS +VAFS E++ + +
Sbjct: 179 LIRRLVP--GIEI--EHRPRLSQLTHAGGCKLTRL-PPRS--AIVAFSASEVYAIAELLR 231
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ C ++ G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++ V F SLSK
Sbjct: 232 RRRGG-CAIVMGQLSPRTRNAQVALY--QEKEVDYLVATDAIGMGLNMDVNHVAFASLSK 288
Query: 538 YNGDKIIPVPGSQVKQIAGRAGR 560
++G ++ P+ ++ Q+AGRAGR
Sbjct: 289 FDGTRVRPLNAGEIAQVAGRAGR 311
>gi|413918552|gb|AFW58484.1| hypothetical protein ZEAMMB73_992465 [Zea mays]
Length = 250
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
R ++ +ADLT PHTW+P AR M+R+++YHCGPTNSGKT+NAL F AK G+YCSPLRLL
Sbjct: 9 RDLMATADLTAPHTWYPSARAMRRRVVYHCGPTNSGKTHNALASFSAAKSGVYCSPLRLL 68
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQM 385
+E+FDKVN GV CSL TGQE K V F++H+ACT+EM D D+ D + M
Sbjct: 69 TIEIFDKVNTTGVSCSLRTGQEVKEVAFASHLACTIEMHVVDRR-DLRATDAVGM 122
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 90/150 (60%), Gaps = 33/150 (22%)
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
L A+DAVGM LN NIRRVVFY+L KY+G+K++ VP SQ
Sbjct: 114 LRATDAVGMRLNFNIRRVVFYTLMKYDGEKMVSVPASQ---------------------- 151
Query: 573 LNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS 632
CL +P + +KVGLFP FEQ+E+FA F LL+KF + CR+D +
Sbjct: 152 -----------CLDEPVKEAEKVGLFPTFEQLEMFATHFPELAFNNLLDKFRDTCRIDDT 200
Query: 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
YF+C+HD +KKVA+M+E VQGLSL+D + F
Sbjct: 201 YFMCQHDSMKKVASMIESVQGLSLKDHYIF 230
>gi|347761891|ref|YP_004869452.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580861|dbj|BAK85082.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 870
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 153/277 (55%), Gaps = 16/277 (5%)
Query: 287 PFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVY 344
P + M R ++ GPTN+GKT+ A++R + GI PLRLLA E +D++ A
Sbjct: 22 PHSDRMVRAVL---GPTNTGKTHLAIERLLSHGSGIIGFPLRLLARENYDRMVARKGAQA 78
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLM 403
+L+TG+EK + P + +CTVE + D + +DEIQ+ +D RG+ +T R L
Sbjct: 79 VALITGEEKIVPPNARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLLHARG 138
Query: 404 ADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
E G ++ +++R++ G E+ +H R L L L RS +VA
Sbjct: 139 TAETMFLGADTIRNLIRRLVP--GIEI--EHRPRLSQLTHAGGCKLTRL-PPRS--AIVA 191
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FS E++ + + + C ++ G L P TR Q L+ Q+ E D LVA+DA+GMGL
Sbjct: 192 FSASEVYAIAELLRRRRGG-CAIVMGQLSPRTRNAQVALY--QEKEVDYLVATDAIGMGL 248
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
N+++ V F SLSK++G ++ P+ ++ Q+AGRAGR
Sbjct: 249 NMDVNHVAFASLSKFDGARVRPLNAGEIAQVAGRAGR 285
>gi|405356476|ref|ZP_11025445.1| ATP-dependent DNA helicase [Chondromyces apiculatus DSM 436]
gi|397090520|gb|EJJ21375.1| ATP-dependent DNA helicase [Myxococcus sp. (contaminant ex DSM
436)]
Length = 815
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 152/290 (52%), Gaps = 32/290 (11%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LG-VYCSLLTGQEK 353
++ GPTN+GKTY A++R +E GI PLRLLA EV+D+V A +G +L+TG+EK
Sbjct: 12 VVAELGPTNTGKTYRAIERMLEHGSGIMGFPLRLLAREVYDRVTARVGEGRVALMTGEEK 71
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG---------LMA 404
+L P ++ CTVE + TD + D +DEIQ+ + RG+ +T LL L A
Sbjct: 72 RLPPRPDYWICTVEAMPTDRVADFVAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGA 131
Query: 405 DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF 464
D + P + ++ + L + Y + L+++ VVAF
Sbjct: 132 DTMR----PMLQTLIPHASVKRATRLSQLRYSGHR-----------SLKSLPPRSAVVAF 176
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
S ++E+ ++ + V+ GAL P TR Q ++ Q E LVA+DA+GMGLN
Sbjct: 177 SADRVYELAESL-RRLRGGVAVVLGALSPRTRNAQVAMY--QSGEVQYLVATDAIGMGLN 233
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
L++ V F LSKY+G + + ++ QIAGRAGR DG TLN
Sbjct: 234 LDLNHVAFAGLSKYDGAEQRDLFPDELAQIAGRAGRH---LNDGSFGTLN 280
>gi|254461628|ref|ZP_05075044.1| Helicase conserved C-terminal domain protein [Rhodobacterales
bacterium HTCC2083]
gi|206678217|gb|EDZ42704.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 904
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 145/271 (53%), Gaps = 13/271 (4%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTG 350
+++II GPTN+GKT A++R + + G+ PLRLLA EV+D++ L +L+TG
Sbjct: 4 QQRIIAVLGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVTLRGPSVVALVTG 63
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHL 409
+E+ + P + + CTVE + D +DEIQ+ +D RG+ +T LL E
Sbjct: 64 EERIVPPRTQYWVCTVEAMPQGMGADFLAVDEIQLCADPERGHVFTERLLSARGLHETLF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G ++ D ++ + + ER L + +R +V FS +
Sbjct: 124 MGADTMRDPIKSLIPDA----QFVARERMSELAYSGPK---KISRMRPRSAIVGFSVENV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + V+ GAL P TR Q ++ Q+ + D LVA+DA+GMGLNL+I
Sbjct: 177 YAIAELIRRQKG-GAAVVMGALSPRTRNAQVEMY--QNGDVDFLVATDAIGMGLNLDIDH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F SLSK++G ++ P+ +++ QIAGRAGR
Sbjct: 234 VAFSSLSKFDGQRMRPLMANELAQIAGRAGR 264
>gi|260434067|ref|ZP_05788038.1| MgpS [Silicibacter lacuscaerulensis ITI-1157]
gi|260417895|gb|EEX11154.1| MgpS [Silicibacter lacuscaerulensis ITI-1157]
Length = 936
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 146/269 (54%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I+ GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ A+ +L+TG+E
Sbjct: 6 RIVAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDKIVAIRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL + E G
Sbjct: 66 RIVPPRAQYWVCTVEAMPEGMGTDFVAIDEIQLCTDPERGHVFTDRLLRMRGTHETLFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
D +R + + ER LV + + RS +V FS ++
Sbjct: 126 ----ADTMRGPIAALVPQAQFARRERMSQLVYTGSKKISRM-PPRS--AIVGFSVENVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL++ V
Sbjct: 179 IAELLRRQKGG-AAVVMGALSPRTRNAQVALY--QNGEVDYLVATDAIGMGLNLDVNHVA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SLSK++G ++ P+ +++ QIAGRAGR
Sbjct: 236 FSSLSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|254510321|ref|ZP_05122388.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium KLH11]
gi|221534032|gb|EEE37020.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium KLH11]
Length = 929
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 144/264 (54%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ A+ +L+TG+E+ + P
Sbjct: 4 LGPTNTGKTHYAIERMLGYRTGVIGLPLRLLAREVYDKIVAIRGPSVVALVTGEERIVPP 63
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ + CTVE + D IDEIQ+ +D RG+ +T R L +E G
Sbjct: 64 RTQYWVCTVEAMPEGMGADFVAIDEIQLCADPERGHVFTDRLLCARGTNETLFLGS---- 119
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
D +R + E ER LV + + RS +V FS ++ + +
Sbjct: 120 DTMRGTIAALVPEAQFVRRERMSQLVYSGSRKISRM-PARS--AIVGFSVENVYAIAELL 176
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q +L+ Q+ E D LVA+DA+GMGLNL++ V F SL+
Sbjct: 177 RRQKGG-AAVVMGALSPRTRNAQVDLY--QNGEVDYLVATDAIGMGLNLDVNHVAFSSLT 233
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G ++ P+ +++ QIAGRAGR
Sbjct: 234 KFDGRRMRPLAPNELAQIAGRAGR 257
>gi|346992360|ref|ZP_08860432.1| helicase, putative [Ruegeria sp. TW15]
Length = 928
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 144/264 (54%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY--CSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ A+ + +L+TG+E+ + P
Sbjct: 4 LGPTNTGKTHYAIERMLGYRTGLIGLPLRLLAREVYDKIVAIRGHSVVALVTGEERIVPP 63
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ + CTVE + D IDEIQ+ +D RG+ +T R L +E G
Sbjct: 64 RAQYWVCTVEAMPEGMGADFVAIDEIQLCADPERGHVFTDRLLRSRGTNETLFLGS---- 119
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
D +R + E ER LV + + S +V FS ++ + +
Sbjct: 120 DTMRGAIAALVPEAQFVRRERMSQLVYSGSK---KISRMPSRSAIVGFSVDNVYAIAELL 176
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q +L+ Q+ E D LVA+DA+GMGLNL++ V F SL+
Sbjct: 177 RRQKGG-AAVVMGALSPRTRNAQVDLY--QNGEVDYLVATDAIGMGLNLDVNHVAFSSLT 233
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G ++ P+ +++ QIAGRAGR
Sbjct: 234 KFDGRRMRPLAPNELAQIAGRAGR 257
>gi|83941126|ref|ZP_00953588.1| helicase, putative [Sulfitobacter sp. EE-36]
gi|83846946|gb|EAP84821.1| helicase, putative [Sulfitobacter sp. EE-36]
Length = 975
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 147/269 (54%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT A++R + + G+ PLRLLA EV+D++ AL +L+TG+E
Sbjct: 6 RVVAVLGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVALRGPSIVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
+ + P + + CTVE + D+ +DEIQ+ +D RG+ +T LL E G
Sbjct: 66 RIVPPRTQYWVCTVEAMPEGMGADLVAVDEIQLCADPERGHVFTDRLLRARGQHETLFMG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
D +R + E ER L+ + + +R RS +V FS ++
Sbjct: 126 S----DTMRGSIAALVPEAQFIRRERMSELIYSGQKKISRMRP-RS--AIVGFSVENVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ GAL P TR Q ++ Q+ E D LVA+DA+GMGLNL++ V
Sbjct: 179 IAELIRRQKGG-AAVVMGALSPRTRNAQVAMY--QNGEVDYLVATDAIGMGLNLDVDHVA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +LSK++G ++ P+ +++ QIAGRAGR
Sbjct: 236 FSALSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|162456000|ref|YP_001618367.1| ATP-dependent helicase [Sorangium cellulosum So ce56]
gi|161166582|emb|CAN97887.1| ATP-dependent helicase [Sorangium cellulosum So ce56]
Length = 778
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 149/285 (52%), Gaps = 13/285 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LG-VYCSLLTGQEK 353
I GPTN+GKT+ A++R + G+ PLRLLA EV+D+V+ +G +L+TG+EK
Sbjct: 7 ITAVLGPTNTGKTHRAIERMLSHDSGMIGLPLRLLAREVYDRVSTQVGEARVALVTGEEK 66
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGD 412
++ ++ CTVE + D D IDEIQ+ + RG+ +T R LL E G
Sbjct: 67 RVPRRPDYWVCTVEAMPVDLEVDFLAIDEIQLAAHDQRGHVFTERLLLSRGRRETWFLG- 125
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
D +R + +E + R L A G L + VVAFS +++E+
Sbjct: 126 ---ADTMRPLMAELVPTASIVQHPRLSRL---ASAGAGKLSRLPPRSAVVAFSTPQVYEI 179
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ V+ GAL P TR Q LF Q E D LVA+DA+GMGLNL++R V F
Sbjct: 180 AERLRAQRGG-AAVVLGALSPRTRNAQVALF--QSGEVDYLVATDAIGMGLNLDVRHVAF 236
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577
+L K++G + + +++ QIAGRAGR + G L+L D
Sbjct: 237 AALRKFDGRAVRDLDPAELAQIAGRAGRHLADGTFGTVAPLSLPD 281
>gi|406707337|ref|YP_006757689.1| helicase family protein [alpha proteobacterium HIMB59]
gi|406653113|gb|AFS48512.1| helicase family protein [alpha proteobacterium HIMB59]
Length = 848
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 196/380 (51%), Gaps = 36/380 (9%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEKKL 355
GPTN+GKT+ A ++ + G++ PLRLLA E +DK A +Y +L+TG+EK +
Sbjct: 8 LGPTNTGKTFYAFEQMFSYQSGVFGFPLRLLARENYDK--ACNLYPINQIALITGEEKII 65
Query: 356 VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL-CGDPS 414
+ + CTVE + D ++ +DEIQ+ +D RG+ +T+ +L ++ + G +
Sbjct: 66 PKDAKYFFCTVESMPED-FFEFVCVDEIQLAADYERGHIFTQRILYARGEQKTIFLGSTT 124
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG--DLRNVRSGDCVVAFSRREIFEV 472
+ ++++++ + + RF L +G ++N++ ++AF+ ++E+
Sbjct: 125 MEEIIKELIPDVEIKFKN----RFSEL-----NFIGHKKIQNIKPRSAIIAFNLIGLYEI 175
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
I + ++ GAL P+TR Q L+ +D E D +VA+DA+GMGLNLNI +V F
Sbjct: 176 AEQI-RSLKGGVALVAGALSPKTRNSQVKLY--EDGEVDYIVATDAIGMGLNLNINQVYF 232
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVV 592
L K++G P+ +V QIAGRAGR G T +++ + L FE V
Sbjct: 233 SGLEKFDGKYTRPLSDMEVAQIAGRAGRYTKSGYFGSTLGAKFTNMEIVENVLAHRFEPV 292
Query: 593 KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL------DGSYFLCRHDHIKKVAN 646
+K+ F + L + + S Y Q L+K N RL + FL + KK+++
Sbjct: 293 RKI-----FWRNHLLSFK-STYELTQSLKKQPTNQRLILKKDAEDQKFLFSILNNKKISS 346
Query: 647 MLEKVQGLSLEDRFNFCFAP 666
+L + SL+ ++ C P
Sbjct: 347 LLNSPE--SLQQLWDVCRIP 364
>gi|410943969|ref|ZP_11375710.1| ATP-dependent DNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 871
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 146/273 (53%), Gaps = 13/273 (4%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLL 348
+M + GPTN+GKT+ AL R M GI PLRLLA E +++ V A G +L+
Sbjct: 34 IMPASVRAALGPTNTGKTHYALTRMMAHSSGIIGFPLRLLARENYERLVKAKGERSVALI 93
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EI 407
TG+EK + P + ACTVE + D + +DEIQ+ SD RG+ +T LL E
Sbjct: 94 TGEEKIVPPGARWFACTVEAMPLDRKTEFVAVDEIQLASDPDRGHIFTDRLLHARGTVET 153
Query: 408 HLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
G ++ +++K+ G E+ + R LV T L L RS +VAFS
Sbjct: 154 LFLGAETIRPLLQKLVP--GIEIDTR--TRLSSLVSTGPTKLSRL-PPRS--AIVAFSMA 206
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
E++ + I + C VI G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++
Sbjct: 207 EVYALAEVIRRRRGG-CAVIMGQLSPRTRNAQVELY--QNREVDYLVATDAIGMGLNMDV 263
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V LSK++G P+ ++ QIAGRAGR
Sbjct: 264 DHVALAQLSKFDGTSPRPLFPQEIAQIAGRAGR 296
>gi|407768470|ref|ZP_11115848.1| ATP-dependent helicase MgpS [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288154|gb|EKF13632.1| ATP-dependent helicase MgpS [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 955
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 128/475 (26%), Positives = 225/475 (47%), Gaps = 28/475 (5%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQE 352
+I+ GPTN+GKT+ A++R + G+ PLRLLA E +D+ A +G +L+TG+E
Sbjct: 10 RILAILGPTNTGKTHLAMERMLAHTSGMIGFPLRLLARENYDRAVARVGKGAVALITGEE 69
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ L + + CTVE + ++ D IDEIQM +D RG+ +T LL E G
Sbjct: 70 RILPKSARYFLCTVEAMPVNKQVDFLAIDEIQMCADPERGHVFTDRLLHARGISETMFMG 129
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ V+R++ D + RF L ++ + S VV FS +E++
Sbjct: 130 AETIRPVIRQLI----DNVEFDTRARFSTLTYNGSK---KIQRLPSQSAVVTFSAQEVYA 182
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
V + + V+ GAL P TR Q +F Q+ E + L+A+DA+GMGLNL + V
Sbjct: 183 VAELVRRQKGG-AAVVLGALSPRTRNAQVEMF--QNGEVEHLIATDAIGMGLNLELNHVA 239
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
F +L K++G + ++ QIAGRAGR + G+T L+ D D + + FE
Sbjct: 240 FAALHKFDGQFNRGLSAAETAQIAGRAGRHMNDGTFGVTGNLSGIDPDIIEQIEAHEFEP 299
Query: 592 VKKV---GLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANML 648
+ KV F V+ L + L E L +++ + ++A+
Sbjct: 300 LAKVFWRNARLDFRTVDALQKSLRKRSDNPTLVLAREPVDEVMLAHLSQNEDVARIASAP 359
Query: 649 EKVQGLSLEDRFNFCFAP--VNIRD---PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAK 703
++VQ L + C P NI P+ + + R+ + + PV +
Sbjct: 360 DRVQLL-----WEVCQIPDFRNIHTDAHPRLLTSIYRYLAKPNSKLPVDWLGEQVLRLDR 414
Query: 704 NDAELLDLETKHQVLSMYLWLSHQ--FKEEVFPYAKKAEAMATDIAELLGQSLTN 756
D ++ L ++ + ++ ++SH+ + E+ + ++ A+ ++++L + LT
Sbjct: 415 YDGDIDQLSSRLAGIRVWTYVSHKHHWLEDANHWQERTRAIEDKLSDVLHERLTQ 469
>gi|453330840|dbj|GAC87167.1| ATP-dependent DNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 871
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 146/273 (53%), Gaps = 13/273 (4%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLL 348
+M + GPTN+GKT+ AL R M GI PLRLLA E +++ V A G +L+
Sbjct: 34 IMPASVRAALGPTNTGKTHYALTRMMAHSSGIIGFPLRLLARENYERLVKAKGERSVALI 93
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EI 407
TG+EK + P + ACTVE + D + +DEIQ+ SD RG+ +T LL E
Sbjct: 94 TGEEKIVPPGARWFACTVEAMPLDRKAEFVAVDEIQLASDPDRGHIFTDRLLHARGTVET 153
Query: 408 HLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
G ++ +++K+ G E+ + R LV T L L RS +VAFS
Sbjct: 154 LFLGAETIRPLLQKLVP--GIEIDTR--TRLSSLVSTGPTKLSRL-PPRS--AIVAFSMA 206
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
E++ + I + C VI G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++
Sbjct: 207 EVYALAEVIRRRRGG-CAVIMGQLSPRTRNAQVELY--QNREVDYLVATDAIGMGLNMDV 263
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V LSK++G P+ ++ QIAGRAGR
Sbjct: 264 DHVALAQLSKFDGTSPRPLFPQEIAQIAGRAGR 296
>gi|154252150|ref|YP_001412974.1| helicase domain-containing protein [Parvibaculum lavamentivorans
DS-1]
gi|154156100|gb|ABS63317.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 997
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 148/271 (54%), Gaps = 13/271 (4%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTG 350
+R++ GPTN+GKT+ A++R M + G+ PLRLLA EV+D+V A G +L+TG
Sbjct: 20 RRRVTAVLGPTNTGKTHLAIERMMAHRTGMIGLPLRLLAREVYDRVVKAKGAREVALITG 79
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHL 409
+EK L P + + CTVE + D D IDEIQ+ +D RG+ +T LL E +
Sbjct: 80 EEKILPPTARYYVCTVEAMPLDLEVDFLAIDEIQLAADRERGHTFTDRLLRARGHSETMM 139
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G +V +++K+ +T RF L + L RS +VAFS ++
Sbjct: 140 LGSETVRGLIQKLLPDT----LFISRPRFSELSWTGSKKITRLPR-RS--AIVAFSADQV 192
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLN+++
Sbjct: 193 YAIAELIRRQRGG-AAVVMGALSPRTRNAQVALY--QSGDVDFLVATDAIGMGLNMDVDH 249
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F S K++G P+ +++ QIAGRAGR
Sbjct: 250 VAFASTEKFDGRLHRPLHVAELAQIAGRAGR 280
>gi|83955685|ref|ZP_00964265.1| helicase, putative [Sulfitobacter sp. NAS-14.1]
gi|83839979|gb|EAP79155.1| helicase, putative [Sulfitobacter sp. NAS-14.1]
Length = 968
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 144/264 (54%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT A++R + + G+ PLRLLA EV+D++ AL +L+TG+E+ + P
Sbjct: 4 LGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVALRGPSIVALVTGEERIVPP 63
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVL 416
+ + CTVE + D+ +DEIQ+ +D RG+ +T LL E G
Sbjct: 64 RTQYWVCTVEAMPEGMGADLVAVDEIQLCADPERGHVFTDRLLRARGQHETLFMGS---- 119
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
D +R + E ER L+ + + +R RS +V FS ++ + I
Sbjct: 120 DTMRGSIAALVPEAQFIRRERMSELIYSGQKKISRMRP-RS--AIVGFSVENVYAIAELI 176
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q ++ Q+ E D LVA+DA+GMGLNL++ V F +LS
Sbjct: 177 RRQKGG-AAVVMGALSPRTRNAQVAMY--QNGEVDYLVATDAIGMGLNLDVDHVAFSALS 233
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G ++ P+ +++ QIAGRAGR
Sbjct: 234 KFDGRRMRPLAPNELAQIAGRAGR 257
>gi|340777271|ref|ZP_08697214.1| helicase domain-containing protein [Acetobacter aceti NBRC 14818]
Length = 873
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 142/265 (53%), Gaps = 17/265 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA E ++++ A +L+TG+EK + P
Sbjct: 51 GPTNTGKTHFAIERMLAHPSGIIGFPLRLLARENYERLVARKGASRVALITGEEKIIPPD 110
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLD 417
+ +CTVE + D IDEIQ+ +D RG+ +T LL E G ++
Sbjct: 111 ARWFSCTVEAMPVDRQVSFLAIDEIQLCADPERGHIFTSRLLHARGTGETLFLGAETIAP 170
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR--NVRSGDCVVAFSRREIFEVKMA 475
++R++ E + + + A T G R + + +VAFS E++ +
Sbjct: 171 LMRRLVPEITIDTRPR---------LSALTFTGPARLEKLPARSAIVAFSAAELYAIAEL 221
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
I C V+ G + P TR Q L+ Q+ E D LVA+DA+GMGLN++I V F L
Sbjct: 222 IRSRRGG-CAVVMGQMSPRTRNAQVELY--QNREVDYLVATDAIGMGLNMDIAHVAFAGL 278
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
+K++G + P+ S++ QIAGRAGR
Sbjct: 279 AKFDGSRRRPLTASEIAQIAGRAGR 303
>gi|409402747|ref|ZP_11252240.1| hypothetical protein MXAZACID_14658 [Acidocella sp. MX-AZ02]
gi|409128730|gb|EKM98617.1| hypothetical protein MXAZACID_14658 [Acidocella sp. MX-AZ02]
Length = 852
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 148/266 (55%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVYC-SLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA E +D+ V A G+ +L+TG+EK + P
Sbjct: 15 LGPTNTGKTHLAIERLLSHATGIIGFPLRLLARENYDRMVKAKGIKAVALITGEEKIVPP 74
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPS 414
+ +CTVE + D + +DEIQ+ +D RG+ +T LL GL+ E G +
Sbjct: 75 GARWFSCTVEAMPLDRKVEFLAVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGADT 132
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
+ ++R++ G E+ + R L L L RS +VAFS E++ +
Sbjct: 133 IAPLMRRLVP--GVEIETR--PRLSQLSFAGAAKLSRL-PPRS--AIVAFSAAEVYAIAE 185
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
A+ + C V+ G L P TR Q L+ QD E D LVA+DA+GMGLN+++ V F
Sbjct: 186 AVRRRRGG-CAVVMGRLSPRTRNAQVALY--QDKEVDFLVATDAIGMGLNMDVNHVAFAG 242
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ K++G + + S+V QIAGRAGR
Sbjct: 243 IRKFDGRQPRLLTPSEVAQIAGRAGR 268
>gi|296532714|ref|ZP_06895401.1| helicase domain protein, partial [Roseomonas cervicalis ATCC 49957]
gi|296266959|gb|EFH12897.1| helicase domain protein [Roseomonas cervicalis ATCC 49957]
Length = 845
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 144/269 (53%), Gaps = 25/269 (9%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A+ R + GI PLRLLA E +D++ A+ +L+TG+EK L P
Sbjct: 31 GPTNTGKTHLAITRMLAHASGIIGFPLRLLARENYDRMVAVKGAAQVALITGEEKILPPG 90
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSV 415
+ ACTVE + D + +DEIQ+ +D RG+ +T LL GL+ E G ++
Sbjct: 91 AKWFACTVEAMPLDRRVEFVAVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGAETI 148
Query: 416 LDVVRKICS----ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
+++++ ET L E Y AK L + VVAFS E++
Sbjct: 149 RPLLQRLVPQAEVETRPRLSELRY------AGPAK-----LTRLPPRSAVVAFSAAEVYA 197
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ AI + C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++ V
Sbjct: 198 IAEAIRRRRGG-CAVVMGRLSPRTRNAQVALY--QNREVDFLVATDAIGMGLNMDVDHVA 254
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SL K++G + + + QIAGRAGR
Sbjct: 255 FASLQKFDGHRPRILTAQEAAQIAGRAGR 283
>gi|414341083|ref|YP_006982604.1| ATP-dependent DNA helicase [Gluconobacter oxydans H24]
gi|411026418|gb|AFV99672.1| ATP-dependent DNA helicase [Gluconobacter oxydans H24]
Length = 837
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 145/272 (53%), Gaps = 13/272 (4%)
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLLT 349
M + GPTN+GKT+ AL R M GI PLRLLA E +++ V A G +L+T
Sbjct: 1 MPASVRAALGPTNTGKTHYALTRMMAHSSGIIGFPLRLLARENYERLVKAKGERSVALIT 60
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIH 408
G+EK + P + ACTVE + D + +DEIQ+ SD RG+ +T LL E
Sbjct: 61 GEEKIVPPGARWFACTVEAMPLDRKAEFVAVDEIQLASDPDRGHIFTDRLLHARGTVETL 120
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
G ++ +++K+ G E+ + R LV T L L RS +VAFS E
Sbjct: 121 FLGAETIRPLLQKLVP--GIEIDTR--TRLSSLVSTGPTKLSRL-PPRS--AIVAFSMAE 173
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + C VI G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++
Sbjct: 174 VYALAEVIRRRRGG-CAVIMGQLSPRTRNAQVELY--QNREVDYLVATDAIGMGLNMDVD 230
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V LSK++G P+ ++ QIAGRAGR
Sbjct: 231 HVALAQLSKFDGTSPRPLFPQEIAQIAGRAGR 262
>gi|354594358|ref|ZP_09012397.1| hypothetical protein CIN_10930 [Commensalibacter intestini A911]
gi|353672034|gb|EHD13734.1| hypothetical protein CIN_10930 [Commensalibacter intestini A911]
Length = 846
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 144/263 (54%), Gaps = 13/263 (4%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVPF 358
GPTN+GKT+ AL+R M G PLRLLA E +D++ + + +L+TG+EK + P
Sbjct: 16 GPTNTGKTHLALERMMAHTSGTIGFPLRLLAKENYDRMVLIKGEQHVALITGEEKIIPPK 75
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLD 417
+ +CTVE + T D IDEIQ+ +D RG+ +T LL + E G ++
Sbjct: 76 AKWFSCTVEAMPTHIPVDFVAIDEIQLCADPDRGHIFTDRLLHCRGNIETMFLGADTITP 135
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
+++++ E+ + R L T + +VAFS E++ + I
Sbjct: 136 ILKQLIPNI--EIDSR--PRLSNLTY---TGFDKFTKLPPRSAIVAFSANEVYAIAEFI- 187
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
K + C ++ G L P TR Q L+ Q+ E D LVA+DA+GMGLN+N+ V F SLSK
Sbjct: 188 KRRHGGCAIVMGRLSPRTRNAQMELY--QNKEVDYLVATDAIGMGLNMNVNHVAFASLSK 245
Query: 538 YNGDKIIPVPGSQVKQIAGRAGR 560
Y+G ++ + S++ QIAGRAGR
Sbjct: 246 YDGRQLRNLYPSEIAQIAGRAGR 268
>gi|347758499|ref|YP_004866061.1| helicase domain-containing protein [Micavibrio aeruginosavorus
ARL-13]
gi|347591017|gb|AEP10059.1| helicase conserved C-terminal domain protein [Micavibrio
aeruginosavorus ARL-13]
Length = 978
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 161/305 (52%), Gaps = 29/305 (9%)
Query: 265 DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYC 324
D +++R IE T+ +T A +++ GPTN+GKTY A++R + G+
Sbjct: 12 DNPEKYRISIEIMTGTRTNT----AVRTPGRVLAVLGPTNTGKTYTAIERMLTHHSGVIG 67
Query: 325 SPLRLLAMEVFDK-VNALGVYC-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDE 382
PLRLLA E +D+ V GV+ +L+TG+EK + P + + CTVE + D+ +D +DE
Sbjct: 68 FPLRLLARENYDRIVERKGVHAVALVTGEEKIVPPHARYYVCTVESMPVDQKFDFLAVDE 127
Query: 383 IQMMSDACRGYAWTRALL---GLMADEIHLCGDPSVLDVVRKICS----ETGDELHEQHY 435
IQ+ D RG+ +T LL G++ E G ++ +++ + E+ L + Y
Sbjct: 128 IQLCGDPERGFIFTDRLLRSRGIV--ETMFMGAETIRPLMQALIPNIEFESRARLSQLTY 185
Query: 436 ERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
+K L K VVAFS +++ I +H V+ GAL P T
Sbjct: 186 RGYKKLTRLPKRT-----------AVVAFSVDDVYANADLIRRHRGG-TAVVLGALSPRT 233
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R +Q +++ Q E D LVA+DA+GMGLN++I V + K++G I + +++ QIA
Sbjct: 234 RNKQVDMY--QSGEVDFLVATDAIGMGLNMDIHHVALAATRKFDGAHIRSLDKAEIAQIA 291
Query: 556 GRAGR 560
GRAGR
Sbjct: 292 GRAGR 296
>gi|339017923|ref|ZP_08644068.1| DNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752926|dbj|GAA07372.1| DNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 882
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 145/263 (55%), Gaps = 13/263 (4%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVY-CSLLTGQEKKLVPF 358
GPTN+GKT+ AL+R + G+ PLRLLA E ++++ L GV +L+TG+EK + P
Sbjct: 48 GPTNTGKTHLALERMLAHTSGVMGFPLRLLARENYERMVKLKGVRSVALITGEEKIIPPG 107
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLD 417
+ +CTVE + D D +DEIQ+ +D RG+ +T LL + E G ++
Sbjct: 108 ARWFSCTVEAMPMDRRVDFVAVDEIQLCADPERGHVFTDRLLNARGEAETLFLGAETIAP 167
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
V+R + G E+ + R LV T L L +VAFS +++ + I
Sbjct: 168 VLRTLIR--GIEIETR--PRLSNLVHTGFTRLSRLP---PRTAIVAFSAGDVYAIAELIR 220
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN++I V F LSK
Sbjct: 221 RRRGG-CAVVMGQLSPRTRNAQVALY--QNREVDYLVATDAIGMGLNMDIHHVAFAGLSK 277
Query: 538 YNGDKIIPVPGSQVKQIAGRAGR 560
++G + + +++ QIAGRAGR
Sbjct: 278 FDGSRRRMLAAAEIAQIAGRAGR 300
>gi|89055802|ref|YP_511253.1| helicase-like protein [Jannaschia sp. CCS1]
gi|88865351|gb|ABD56228.1| helicase-like protein [Jannaschia sp. CCS1]
Length = 978
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 19/272 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQE 352
++ GPTN+GKT+ A++R + + G+ PLRLLA EV+DKV A+ +L+TG+E
Sbjct: 9 RVAAILGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDKVVAIKGPSVVALVTGEE 68
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGD 412
+ + P + + CTVE + T D +DEIQ+ +D RG+ +T LL H G
Sbjct: 69 RIVPPRAAYWVCTVEAMPTASGADFLAVDEIQLCADPERGHVFTDRLL-------HARGL 121
Query: 413 PSVL----DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L +R +E H +RF LV + + +V FS
Sbjct: 122 HETLFMGASTMRNAIAELVPHCEFMHRDRFSQLVYAGSK---KMSRIPGRSAIVGFSVEN 178
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + T V+ GAL P TR Q L+ Q+ + D+LVA+DA+GMGLNL+I+
Sbjct: 179 LYATAELL-RRTKGGAAVVMGALSPRTRNAQVELY--QNGDVDILVATDAIGMGLNLDIK 235
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G K+ + +++ QIAGRAGR
Sbjct: 236 HVAFSGTRKFDGRKMRELWPNELAQIAGRAGR 267
>gi|442319534|ref|YP_007359555.1| helicase [Myxococcus stipitatus DSM 14675]
gi|441487176|gb|AGC43871.1| helicase [Myxococcus stipitatus DSM 14675]
Length = 799
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 147/276 (53%), Gaps = 29/276 (10%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEK 353
++ GPTN+GKT+ A++R +E G+ PLRLLA EV+D+V A +G +L+TG+EK
Sbjct: 12 VVAELGPTNTGKTHRAIERMLEHDTGMMGLPLRLLAREVYDRVTARVGEGRVALMTGEEK 71
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG---------LMA 404
+L P ++ CTVE + D D +DEIQ+ + RG+ +T LL L A
Sbjct: 72 RLPPRPDYWICTVEAMPLDRAVDFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGA 131
Query: 405 DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF 464
D + P V ++ + + L + Y K L+++ VVAF
Sbjct: 132 DTMR----PMVQSLIPHASLKRANRLSQLRYTGRK-----------SLKSLPPRSAVVAF 176
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
S ++E+ ++ + V+ GAL P TR Q ++ Q E LVA+DA+GMGLN
Sbjct: 177 SADRVYELAESL-RRLRGGVAVVLGALSPRTRNAQVAMY--QAGEVQYLVATDAIGMGLN 233
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
L++ V F +LSKY+G + + ++ QIAGRAGR
Sbjct: 234 LDLNHVAFAALSKYDGAEQRELFSDELAQIAGRAGR 269
>gi|380478184|emb|CCF43738.1| ATP-dependent RNA helicase SUV3 [Colletotrichum higginsianum]
Length = 304
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
ADL P WFP R ++R I H GPTNSGKTY AL+ AK GIY PLRLLA E++
Sbjct: 166 ADLRFPQEWFPATRAIQRTIHLHVGPTNSGKTYRALKALENAKSGIYGGPLRLLAHEIYS 225
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNH-IACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
+ A G C+++TG+E+++ N+ I+CTVEM + + DVAV+DEIQM+SD RG+AW
Sbjct: 226 RFQAKGRPCAMITGEEQRIPDSDNYFISCTVEMTPLNRLVDVAVLDEIQMISDRDRGWAW 285
Query: 396 TRALLGLMADEIH 408
++ALLG+MA E+
Sbjct: 286 SQALLGVMAKEVQ 298
>gi|383455668|ref|YP_005369657.1| putative helicase [Corallococcus coralloides DSM 2259]
gi|380733411|gb|AFE09413.1| putative helicase [Corallococcus coralloides DSM 2259]
Length = 805
Score = 149 bits (375), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 142/265 (53%), Gaps = 13/265 (4%)
Query: 299 HCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLV 356
GPTN+GKT+ A++R +E GI PLRLLA EV+D+V A +G +L+TG+EK++
Sbjct: 15 ELGPTNTGKTFRAIERMLEHDSGIIGLPLRLLAREVYDRVTAKVGEGRVALMTGEEKRVP 74
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
P ++ CTVE + TD D +DEIQ+ + RG+ +T LL E G
Sbjct: 75 PRPDYWICTVEAMPTDREVDFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLG---- 130
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
D +R + + R L + L+++ VVAFS ++E+ +
Sbjct: 131 ADTMRPMVQALIPHASMKRAMRLSQLRYAGRR---SLKSLPPRSAVVAFSADRVYELAES 187
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ + V+ GAL P TR Q ++ Q E LVA+DA+GMGLNL++ V F +L
Sbjct: 188 L-RRLRGGVAVVLGALSPRTRNAQVAMY--QSGEVQYLVATDAIGMGLNLDLNHVAFATL 244
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SKY+G + + ++ QIAGRAGR
Sbjct: 245 SKYDGAEQRDLYPDELAQIAGRAGR 269
>gi|254441763|ref|ZP_05055256.1| Helicase conserved C-terminal domain protein [Octadecabacter
antarcticus 307]
gi|198251841|gb|EDY76156.1| Helicase conserved C-terminal domain protein [Octadecabacter
antarcticus 307]
Length = 971
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 163/307 (53%), Gaps = 19/307 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
++I GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A+ +L+TG+E
Sbjct: 10 RVIAVLGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVAVRGPSVVALVTGEE 69
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ + P + + CTVE + D D IDEIQ+ +D RG+ +T LL + E G
Sbjct: 70 RIVPPRAKYWVCTVEAMPQDIGADFVAIDEIQLCADLDRGHVFTDRLLRMRGLHETLFMG 129
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ + + E ERF L + + RS +V FS ++
Sbjct: 130 AETMWGAIASMVPEA----DFVKRERFSTLTYTGSKKISRM-PPRS--AIVGFSVENVYA 182
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q ++ Q+ + D LVA+DA+GMGLNL+I V
Sbjct: 183 IAELLRRQKGG-AAVVMGALSPRTRNAQVEMY--QNGDVDYLVATDAIGMGLNLDIDHVA 239
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLKQP 588
F S++KY+G ++ + +++ QIAGRAGR +G+ G TL+ DD+ I+
Sbjct: 240 FSSITKYDGRRMRHLMPNELAQIAGRAGRYMNKGTFGVTGDAPTLD-DDVVQAIQ--NNQ 296
Query: 589 FEVVKKV 595
F VKK+
Sbjct: 297 FAPVKKL 303
>gi|338533423|ref|YP_004666757.1| putative helicase [Myxococcus fulvus HW-1]
gi|337259519|gb|AEI65679.1| putative helicase [Myxococcus fulvus HW-1]
Length = 790
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 149/286 (52%), Gaps = 32/286 (11%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R +E GI PLRLLA EV+D+V A +G +L+TG+EK+L P
Sbjct: 16 LGPTNTGKTHRAIERMLEHDSGIMGLPLRLLAREVYDRVTARVGEGRVALMTGEEKRLPP 75
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG---------LMADEIH 408
++ CTVE + TD D +DEIQ+ + RG+ +T LL L AD +
Sbjct: 76 RPDYWICTVEAMPTDTAVDFIAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMR 135
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
P V ++ + L + Y + L+++ VVAFS
Sbjct: 136 ----PMVQTLIPHASVKRATRLSQLRYAGHR-----------SLKSLPPRSAVVAFSADR 180
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++E+ ++ + V+ GAL P TR Q ++ Q E LVA+DA+GMGLNL++
Sbjct: 181 VYELAESLRR-LRGGVAVVLGALSPRTRNAQVAMY--QSGEVQYLVATDAIGMGLNLDLN 237
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
V F +LSK++G + ++ QIAGRAGR DG TLN
Sbjct: 238 HVAFAALSKFDGADQRELYPDELAQIAGRAGRH---LNDGSFGTLN 280
>gi|338707936|ref|YP_004662137.1| helicase domain-containing protein [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294740|gb|AEI37847.1| helicase domain protein [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 926
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEK 353
+I GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+ +L+TG+EK
Sbjct: 10 VIAVLGPTNTGKTHLAVERMCAYSSGVIGFPLRLLAREVYDRVVAIKGKERVALITGEEK 69
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL-CGD 412
L + + CT E + D + A +DE+Q+ D RG+ +T LL L E+ + G
Sbjct: 70 ILPEKAQYFLCTAESMPMDRDFAFAALDEVQLGCDRERGHVFTDRLLNLRGREVTMFLGS 129
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
++ ++R++ G E+ + RF L + T L + +VAFS E++
Sbjct: 130 DALRPLLRRLIP--GIEIVSR--PRFSTL---SYTGPAKLSRLPPRSAIVAFSAEEVYAT 182
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F
Sbjct: 183 AEML-RRLRGGAAVVMGALSPRTRNAQVEMF--QAGEVDYLVATDAIGMGLNMDVTHVAF 239
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
SLSK++G ++ + +++ QIAGRAGR
Sbjct: 240 ASLSKFDGRQLRRLTIAEMAQIAGRAGR 267
>gi|381166736|ref|ZP_09875950.1| Superfamily II DNA and RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380684309|emb|CCG40762.1| Superfamily II DNA and RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 824
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ AL+R + G+ PLRLLA E++D++ L +L+TG+E
Sbjct: 9 RVVAVLGPTNTGKTHFALERMLGHTTGMIGFPLRLLAREIYDRIVRLRGAGSVALITGEE 68
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
+ + CTVE + D IDEIQ+ +D RG+ +T LL + E G
Sbjct: 69 RIVPAHPRWFVCTVEAMPLDRRVAFLAIDEIQLCADPERGHVFTDRLLHARGEAETAFLG 128
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ ++R++ E + R L+ L D RS VVAFS E++
Sbjct: 129 ADTIRPLLRRLVPE----IEFVARPRLSNLIHTGPRKL-DRLPPRS--VVVAFSASEVYA 181
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ ++ + V+ GAL P TR Q L+ Q E D +VA+DA+GMGLNL++ V
Sbjct: 182 LAESV-RRARGGVAVVLGALSPRTRNAQVGLY--QTGEVDYIVATDAIGMGLNLDVDHVA 238
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
F SLSK++G P+ +++ QIAGRAGR + G T D D + FE
Sbjct: 239 FASLSKFDGRAPRPLAPAEIAQIAGRAGRHMNDGSFGTTADAGPLDTDLALAVENHRFEP 298
Query: 592 VKKV 595
+K +
Sbjct: 299 LKAL 302
>gi|372279847|ref|ZP_09515883.1| helicase-like protein [Oceanicola sp. S124]
Length = 978
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 148/273 (54%), Gaps = 17/273 (6%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTG 350
K +I GPTN+GKT+ A++R + + GI PLRLLA EV+D++ A +L+TG
Sbjct: 4 KGRITAVLGPTNTGKTHYAIERMLGHRTGIIGLPLRLLAREVYDRIVAARGPSVVALVTG 63
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEI 407
+E+ + P + + CTVE + D +DEIQ+ +D RG+ +T LL GL+ D I
Sbjct: 64 EERIVPPRTKYWVCTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLRARGLV-DTI 122
Query: 408 HLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
L G S+ V+ + E H ER L + L RS VV FS
Sbjct: 123 FL-GSHSMRGVIADLLPEA----QFIHRERMSQLTYAGGKKVSRL-PTRS--AVVGFSVD 174
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
I+ + I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++
Sbjct: 175 NIYAMAELIRRQKGG-AAVVMGALSPRTRNAQVELY--QNGDVDFLVATDAIGMGLNLDV 231
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
R V F LSK++G ++ + ++ QIAGRAGR
Sbjct: 232 RHVAFSGLSKFDGRRMRELFPHEMGQIAGRAGR 264
>gi|254474503|ref|ZP_05087889.1| Helicase conserved C-terminal domain protein [Ruegeria sp. R11]
gi|214028746|gb|EEB69581.1| Helicase conserved C-terminal domain protein [Ruegeria sp. R11]
Length = 1003
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 142/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQ 351
R+I+ GPTN+GKT+ A++R + + GI PLRLLA EV+DKV A +L+TG+
Sbjct: 10 RRIVAVLGPTNTGKTHYAIERMLGYRTGIMGFPLRLLAREVYDKVVAARGPSVVALVTGE 69
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLC 410
E+ + P + + CTVE + D IDEIQ+ +D RG+ +T R L E
Sbjct: 70 ERIVPPRAQYWICTVEAMPEGMGCDFLAIDEIQLCADPERGHVFTDRLLRARGTRETLFL 129
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G D +R S + ER LV + + +V FS ++
Sbjct: 130 G----ADTMRGPISALVPGVQFMRRERMSDLVYSGSK---KISRMPPRTAIVGFSIDNVY 182
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q ++ Q+ E D LVA+DA+GMGLNL+I V
Sbjct: 183 AIAELIRRQKGG-AAVVMGALSPRTRNAQVAMY--QNGEVDYLVATDAIGMGLNLDIDHV 239
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SLSK++G ++ + +++ QIAGRAGR
Sbjct: 240 AFSSLSKFDGRRMRQLAPNELAQIAGRAGR 269
>gi|315498118|ref|YP_004086922.1| helicase domain-containing protein [Asticcacaulis excentricus CB
48]
gi|315416130|gb|ADU12771.1| helicase domain protein [Asticcacaulis excentricus CB 48]
Length = 811
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 140/269 (52%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQE 352
+++ GPTN+GKT+ AL+R M G+ PLRLLA EV+D+V GV +L+TG+E
Sbjct: 19 RLVAVLGPTNTGKTHYALERMMAHATGMIGLPLRLLAREVYDRVVKEKGVNAVALITGEE 78
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + ++ CTVE + + D +DEIQ+ +D RG+ +T LL E G
Sbjct: 79 KIIPRLPSYFICTVEAMPLERRVDFLAVDEIQLCADIERGHVFTDRLLRARGRYETLFMG 138
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
+ + R + Q ER L L + +VAFS +++
Sbjct: 139 AATFAPLFRSLFPHA----EVQFRERLSQLSYSGSK---KLTRLPKRTAIVAFSTEQVYA 191
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ G+L P+TR Q +LF Q E D LVA+DA+GMGLN++I V
Sbjct: 192 IAELIRRQRGG-AAVVMGSLSPKTRNAQVDLF--QRGEVDFLVATDAIGMGLNMDIDHVA 248
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SLSK++G + + + QIAGRAGR
Sbjct: 249 FASLSKFDGRRTRALTAQEAAQIAGRAGR 277
>gi|357030981|ref|ZP_09092925.1| ATP-dependent DNA helicase [Gluconobacter morbifer G707]
gi|356415675|gb|EHH69318.1| ATP-dependent DNA helicase [Gluconobacter morbifer G707]
Length = 851
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 146/273 (53%), Gaps = 13/273 (4%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVYC-SLL 348
M I GPTN+GKT+ AL R M GI PLRLLA E +++ V A G + +L+
Sbjct: 14 TMPASIRAALGPTNTGKTHYALTRMMAHASGIIGFPLRLLARENYERLVQAKGEHAVALI 73
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EI 407
TG+EK + P + +CTVE + D + +DEIQ+ +D RG+ +T LL E
Sbjct: 74 TGEEKIVPPRARWFSCTVEAMPLDRQAEFVAVDEIQLAADPDRGHIFTDRLLHARGTVET 133
Query: 408 HLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
G ++ +++K+ G E+ + R LV T L L RS +VAFS
Sbjct: 134 LFLGAETIRPLLQKLVP--GVEIDIR--TRLSSLVSTGYTKLSRL-PPRS--AIVAFSVG 186
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
E++ + I + C VI G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++
Sbjct: 187 EVYALAEVIRRRRGG-CAVIMGQLSPRTRNAQVELY--QNREVDYLVATDAIGMGLNMDV 243
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V LSK++G P+ ++ QIAGRAGR
Sbjct: 244 DHVALAQLSKFDGTAPRPLYPQEIAQIAGRAGR 276
>gi|86137860|ref|ZP_01056436.1| helicase, putative [Roseobacter sp. MED193]
gi|85825452|gb|EAQ45651.1| helicase, putative [Roseobacter sp. MED193]
Length = 980
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 171/353 (48%), Gaps = 16/353 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ A++R + + GI PLRLLA EV+DK+ A+ +L+TG+E
Sbjct: 6 RVLAVLGPTNTGKTHYAIERMLGYRTGIMGFPLRLLAREVYDKIVAIRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL +E G
Sbjct: 66 RIVPPRAKYWICTVEAMPPGMGCDFLAIDEIQLCADPERGHVFTERLLNSRGTNETLFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
D +R E+ ER LV + + +V FS ++
Sbjct: 126 ----ADTMRGPIKALVPEVEFLRRERMSELVYGGSK---KISRMPPRTAIVGFSVDNVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ +++ V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL+I V
Sbjct: 179 IAELLKRQKGG-AAVVMGALSPRTRNAQVALY--QNGEVDYLVATDAIGMGLNLDIDHVA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLKQP 588
F + SK++G ++ P+ +++ QIAGRAGR GS G L + + ++E P
Sbjct: 236 FSATSKFDGRRMRPLAPNELAQIAGRAGRGMSHGSFGVTGDARPLEDEVAEAIMEHRFSP 295
Query: 589 FEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHI 641
+ + F VE L + ++L + E L FL R I
Sbjct: 296 LKKLNWRSTDLQFGSVEALIRSLESLPQDEVLVRAREADDLGALKFLSRDSGI 348
>gi|163747408|ref|ZP_02154760.1| helicase, putative [Oceanibulbus indolifex HEL-45]
gi|161379261|gb|EDQ03678.1| helicase, putative [Oceanibulbus indolifex HEL-45]
Length = 730
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 147/272 (54%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLLTGQ 351
++++ PTN+GKT A++R + + G+ PLRLLA EV+D+ V A G +L+TG+
Sbjct: 5 KRVVAVLAPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVKARGPSVVALVTGE 64
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIH 408
E+ + P + + CTVE + + D IDEIQ+ +D RG+ +T LL GL E
Sbjct: 65 ERIVPPRTQYWVCTVEAMPQEMGADFVAIDEIQLCADPERGHVFTDRLLRARGL--HETL 122
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
G D +R + + +R LV + + ++ +V FS
Sbjct: 123 FMGS----DTMRGTIAALVPGVDFMRRDRMSELVYSGQK---KISRMKPRSAIVGFSVEN 175
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q ++ Q+ E D LVA+DA+GMGLNL++
Sbjct: 176 VYAIAELIRRQKGG-AAVVMGALSPRTRNAQVEMY--QNGEVDYLVATDAIGMGLNLDVD 232
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F +LSK++G ++ P+ +++ QIAGRAGR
Sbjct: 233 HVAFSALSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|357385955|ref|YP_004900679.1| ATP-dependent DNA helicase [Pelagibacterium halotolerans B2]
gi|351594592|gb|AEQ52929.1| ATP-dependent DNA helicase [Pelagibacterium halotolerans B2]
Length = 991
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 147/269 (54%), Gaps = 23/269 (8%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALG-VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+++V +G +L+TG+E+ +
Sbjct: 13 LGPTNTGKTHYAIERMLAYRSGVIGLPLRLLAREVYNRVVERVGESAVALVTGEERIVPK 72
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVL 416
+ + TVE + TD M D IDEIQ +D RG+ +T LL E L G ++
Sbjct: 73 AARYWVATVEAMPTDMMVDFLAIDEIQTATDFDRGHVFTDRLLHARGRAETLLLGAQTME 132
Query: 417 DVVRKICSETGDELHEQHYE-----RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
V+R++ H E RF L + L RS +VAFS E++
Sbjct: 133 PVIRRLLP---------HAEITFRPRFSQLSWAGSRKISRLPR-RS--AIVAFSASEVYA 180
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ G+L P TR Q +LF Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 181 IAELLRRERGG-AAVVMGSLSPRTRNAQVDLF--QNGDVDFLVATDAIGMGLNLDVTHVA 237
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F S SKY+G + P+ +++ QIAGRAGR
Sbjct: 238 FASDSKYDGRQFRPLTPAEIGQIAGRAGR 266
>gi|83591414|ref|YP_425166.1| helicase-like protein [Rhodospirillum rubrum ATCC 11170]
gi|386348096|ref|YP_006046344.1| helicase-like protein [Rhodospirillum rubrum F11]
gi|83574328|gb|ABC20879.1| Helicase-like [Rhodospirillum rubrum ATCC 11170]
gi|346716532|gb|AEO46547.1| helicase-like protein [Rhodospirillum rubrum F11]
Length = 1066
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 144/269 (53%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQE 352
+I GPTN+GKT+ A++R + G+ PLRLLA E +DK V +G +L+TG+E
Sbjct: 9 RITAVLGPTNTGKTHLAMERMLGHASGMIGFPLRLLARENYDKAVRRVGASRVALVTGEE 68
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
K L P ++ CTVE + D D IDEIQ+ D RG+ +T LL +E G
Sbjct: 69 KILPPRPSYFICTVESMPIDRRVDFLAIDEIQLCGDPERGHLFTERLLNARGREETMFLG 128
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ ++RK+ G + + RF L L L RS VVAFS +++
Sbjct: 129 AETMAPLIRKLVP--GCQFDTR--PRFSQLTYNGHRKLTRL-PPRS--AVVAFSADDVYA 181
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q L+ Q E D LVA+DA+GMGLN+++ V
Sbjct: 182 IAELVRRQRGG-AAVVMGALSPRTRNAQVALY--QSGEVDYLVATDAIGMGLNMDVDHVA 238
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +LSK++G + +V QIAGRAGR
Sbjct: 239 FAALSKFDGQGQRGLSAQEVAQIAGRAGR 267
>gi|115378380|ref|ZP_01465543.1| helicase conserved C-terminal domain protein [Stigmatella
aurantiaca DW4/3-1]
gi|310823354|ref|YP_003955712.1| helicase [Stigmatella aurantiaca DW4/3-1]
gi|115364615|gb|EAU63687.1| helicase conserved C-terminal domain protein [Stigmatella
aurantiaca DW4/3-1]
gi|309396426|gb|ADO73885.1| helicase [Stigmatella aurantiaca DW4/3-1]
Length = 819
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 149/284 (52%), Gaps = 20/284 (7%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEK 353
+I GPTN+GKT+ A++R +E GI PLRLLA EV+D+V A +G +L+TG+EK
Sbjct: 12 VIAELGPTNTGKTHRAIERMLEHDTGIIGLPLRLLAREVYDRVTARVGEGRVALMTGEEK 71
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLC 410
++ P ++ CTVE + D D +DEIQ+ + RG+ +T LL GL E
Sbjct: 72 RVPPRPDYWICTVEAMPADRPVDFLAVDEIQLAAHRERGHVFTDRLLHARGLR--ETWFL 129
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G D +R + + R L L+++ VVAFS ++
Sbjct: 130 G----ADTMRPMLQALIPHASLKRATRLSQLSYAGGR---SLKSLPPRSAVVAFSADRVY 182
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
E+ A+ + V+ GAL P TR Q ++ Q E LVA+DA+GMGLNL++ V
Sbjct: 183 ELAEAL-RRLRGGVAVVLGALSPRTRNAQVAMY--QAGEVQYLVATDAIGMGLNLDLNHV 239
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
F +LSK++G + + ++ QIAGRAGR DG TLN
Sbjct: 240 AFAALSKFDGAEQRDLFPDELAQIAGRAGRH---LNDGSFGTLN 280
>gi|108760067|ref|YP_630462.1| helicase [Myxococcus xanthus DK 1622]
gi|108463947|gb|ABF89132.1| putative helicase [Myxococcus xanthus DK 1622]
Length = 822
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 150/285 (52%), Gaps = 32/285 (11%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R +E GI PLRLLA EV+D+V A +G +L+TG+EK++ P
Sbjct: 17 GPTNTGKTHRAIERMLEHGSGIMGLPLRLLAREVYDRVTARVGEGRVALMTGEEKRVPPR 76
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG---------LMADEIHL 409
++ CTVE + TD+ D +DEIQ+ + RG+ +T LL L AD +
Sbjct: 77 PDYWICTVEAMPTDKSVDFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMR- 135
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
P V ++ + L + Y + L+++ VVAFS +
Sbjct: 136 ---PMVQTLIPHASVKRATRLSQLRYAGHR-----------SLKSLPPRSAVVAFSADRV 181
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+E+ ++ + V+ GAL P TR Q ++ Q E LVA+DA+GMGLNL++
Sbjct: 182 YELAESLRR-LRGGVAVVLGALSPRTRNAQVAMY--QSGEVQYLVATDAIGMGLNLDLNH 238
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
V F +LSK++G + ++ QIAGRAGR DG TLN
Sbjct: 239 VAFAALSKFDGADQRELYPDELAQIAGRAGRH---LNDGSFGTLN 280
>gi|197104176|ref|YP_002129553.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
HLK1]
gi|196477596|gb|ACG77124.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
HLK1]
Length = 850
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 143/269 (53%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ L +L+TG+E
Sbjct: 12 RLVAVLGPTNTGKTHLAVERMLGHQSGMIGLPLRLLAREVYDRIVKLRGARAVALITGEE 71
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL-GLMADEIHLCG 411
K + P + CTVE + + +DEIQ+ +D RG+ +T LL A E L G
Sbjct: 72 KIVPPRPQYFVCTVEAMPLSVEVEFLAVDEIQLCADPERGHVFTHRLLHARGARETMLLG 131
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ +VR++ Q ER L L L RS VVAFS +++
Sbjct: 132 AGTMAPLVRRLLPHA----EIQTRERLSALTYAGPKKLTRLPR-RS--AVVAFSADQVYA 184
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ G+L P TR Q L+ Q E D LVA+DA+GMGLN+++ V
Sbjct: 185 IAELIRRQRGG-AAVVMGSLSPRTRNAQVALY--QSGEVDFLVATDAIGMGLNMDVDHVA 241
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F L K++G + + ++ QIAGRAGR
Sbjct: 242 FAGLRKFDGQRARLLHPQEIGQIAGRAGR 270
>gi|149922153|ref|ZP_01910592.1| putative helicase [Plesiocystis pacifica SIR-1]
gi|149816997|gb|EDM76481.1| putative helicase [Plesiocystis pacifica SIR-1]
Length = 814
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 141/268 (52%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEK 353
I GPTN+GKT+ A++R +E + G+ PLRLLA EV+DK+ A +G +L+TG+EK
Sbjct: 3 ITAALGPTNTGKTHRAIERMLEHRSGMIGLPLRLLAREVYDKITARIGEDRVALVTGEEK 62
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGD 412
++ P ++ CTVE + D +DEIQ+ RG+ +T LL E G
Sbjct: 63 RIPPRPDYWVCTVESMPVSREVDFVAVDEIQLAGHRQRGHVFTDRLLHARGRLETWFMGS 122
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
SV R I E + R L LG L R+ VVAFS E++ +
Sbjct: 123 ESV----RPILEELVPTADVHTHPRLSQLRGIGNLSLGAL-PPRT--AVVAFSAEEVYAI 175
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q L+ Q E D +VA+DA+GMGLN+++ V F
Sbjct: 176 AERL-RQRRGGAAVVLGALSPRTRNAQVALY--QSGEVDYMVATDAIGMGLNMDVDTVAF 232
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
L K++G ++ + ++ QIAGRAGR
Sbjct: 233 AGLRKFDGVEVRELEPGELAQIAGRAGR 260
>gi|84500892|ref|ZP_00999127.1| helicase, putative [Oceanicola batsensis HTCC2597]
gi|84390959|gb|EAQ03377.1| helicase, putative [Oceanicola batsensis HTCC2597]
Length = 999
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 144/269 (53%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ AL +L+TG+E
Sbjct: 6 RITAVLGPTNTGKTHYAIERMLGYRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL E G
Sbjct: 66 RIVPPRTAYWVCTVEAMPEGMGADFLAIDEIQLCADPERGHVFTDRLLRARGQHETLFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
D +R ++ E ER L + + RS +V FS ++
Sbjct: 126 S----DTMRGKIADLVPEATFMRRERMSHLSYAGSKKISRM-PPRS--AIVGFSVDNVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+I V
Sbjct: 179 MAELIRRQKGG-AAVVMGALSPRTRNAQVALY--QNGDVDYLVATDAIGMGLNLDINHVA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +LSK++G ++ P+ +++ QIAGRAGR
Sbjct: 236 FSALSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|255261360|ref|ZP_05340702.1| MgpS [Thalassiobium sp. R2A62]
gi|255103695|gb|EET46369.1| MgpS [Thalassiobium sp. R2A62]
Length = 923
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 146/275 (53%), Gaps = 19/275 (6%)
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLT 349
M +I+ GPTN+GKT+ A++R + + GI PLRLLA EV+DK+ A+ +L+T
Sbjct: 1 MSSRIVAVLGPTNTGKTHYAIERMLGHRSGIMGLPLRLLAREVYDKIVAVRGPSVVALIT 60
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
G+E+ + + + CTVE + D IDEIQ+ SD RG+ +T LL H
Sbjct: 61 GEERIVPERAAYWICTVEAMPEGMGADFVGIDEIQLCSDRERGHVFTDRLL-------HA 113
Query: 410 CGDPSVL----DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS 465
G L D +R + + H ER L + + +R RS +V FS
Sbjct: 114 RGLHETLFMGADTMRSAIAAQIPNVEFVHRERMSELTYTGQKKISRMRE-RS--AIVGFS 170
Query: 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
++ + +++ V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL
Sbjct: 171 VDNVYAIAELLKRQKGG-AAVVMGALSPRTRNAQVELY--QNGDVDYLVATDAIGMGLNL 227
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+I V F L K++G K+ + +++ QIAGRAGR
Sbjct: 228 DIDHVAFSGLQKFDGRKMRYLMPNELAQIAGRAGR 262
>gi|114570842|ref|YP_757522.1| helicase [Maricaulis maris MCS10]
gi|114341304|gb|ABI66584.1| helicase domain protein [Maricaulis maris MCS10]
Length = 925
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 143/269 (53%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALG-VYCSLLTGQE 352
++ GPTN+GKT+ A++R + G+ PLRLLA E++D+V A G +L+TG+E
Sbjct: 10 QVTAALGPTNTGKTHLAVERMLGRASGMIGLPLRLLAREIYDRVVKAKGEAAVALITGEE 69
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCG 411
K + P + + CTVE + ++ +DEIQ+ +D RG+ +T R L +E L G
Sbjct: 70 KIVPPNARYFICTVESMPVEKRVAFVAVDEIQLGADTERGHVFTDRLLRARGTEETMLLG 129
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ +VR++ E + ERF L +L + VVAFS ++
Sbjct: 130 AGTMYRMVRELVPEA----EITYRERFSQLTYAGPA---NLTRLPRRSAVVAFSAEAVYA 182
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ G L P TR Q L+ Q E D LVA+DA+GMGLN++I V
Sbjct: 183 IAELLRRRRGG-AAVVMGGLSPRTRNAQVELY--QSGEVDFLVATDAIGMGLNMDIDHVA 239
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ QIAGRAGR
Sbjct: 240 FAESRKFDGRRRRRLTAAEMAQIAGRAGR 268
>gi|338981027|ref|ZP_08632266.1| Helicase domain-containing protein [Acidiphilium sp. PM]
gi|338208067|gb|EGO95963.1| Helicase domain-containing protein [Acidiphilium sp. PM]
Length = 502
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 145/265 (54%), Gaps = 17/265 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA E +D+ V A G + +L+TG+EK +
Sbjct: 6 GPTNTGKTHLAIERLLAHSSGIIGFPLRLLARENYDRMVAAKGARHVALITGEEKIVPAE 65
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSV 415
+ +CTVE + D + +DEIQ+ +D RG+ +T LL G++ E G ++
Sbjct: 66 ARWFSCTVEAMPLDRKVEFVAVDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLGAETI 123
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
++R++ E E R L L L RS +VAFS E++ + A
Sbjct: 124 RRLLRRLVPEAEIETRP----RLSQLSHAGPAKLSRL-PPRS--AIVAFSAAEVYAIAEA 176
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++ V F L
Sbjct: 177 VRTRRGG-CAVVMGRLSPRTRNAQVALY--QEKEVDFLVATDAIGMGLNMDVDHVAFAGL 233
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SK++G + + S+V QIAGRAGR
Sbjct: 234 SKFDGHRPRLLTASEVAQIAGRAGR 258
>gi|40062702|gb|AAR37615.1| ATP-dependent helicase, putative [uncultured marine bacterium 314]
Length = 830
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQ 351
+KI GPTN+GKT+ ++ + + GI PLRLLA E FDK VN +G +L+TG+
Sbjct: 6 KKITAVLGPTNTGKTHLGVETMLGYENGILGFPLRLLAREFFDKCVNKIGQEKVALITGE 65
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL-C 410
EK + + CTVE + D + D IDEIQM +D RG+ +T LL L D++ +
Sbjct: 66 EKIIPKSPKYYICTVESMPQDILVDFVAIDEIQMCADHERGHIFTDRLLNLRGDKLTMFL 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ V+ + D + ER+ L + L V+AFS EI+
Sbjct: 126 GSHTMKHVIASLI----DNVEFVSRERYSKLTYSGYKKISRLS---PKTAVIAFSIDEIY 178
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ + + VI G+L P+TR Q L+ Q + LVA+DA+GMG+N++I V
Sbjct: 179 ALAELVRRQKGG-AAVIMGSLSPKTRNSQVELY--QSGAANFLVATDAIGMGINMDIDNV 235
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +L K++G K + S++ QIAGRAGR
Sbjct: 236 SFSNLKKFDGKKTRRLNLSEISQIAGRAGR 265
>gi|148262068|ref|YP_001236195.1| helicase domain-containing protein [Acidiphilium cryptum JF-5]
gi|326405580|ref|YP_004285662.1| hypothetical protein ACMV_34330 [Acidiphilium multivorum AIU301]
gi|146403749|gb|ABQ32276.1| helicase domain protein [Acidiphilium cryptum JF-5]
gi|325052442|dbj|BAJ82780.1| hypothetical protein ACMV_34330 [Acidiphilium multivorum AIU301]
Length = 837
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 145/265 (54%), Gaps = 17/265 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA E +D+ V A G + +L+TG+EK +
Sbjct: 13 GPTNTGKTHLAIERLLAHSSGIIGFPLRLLARENYDRMVAAKGARHVALITGEEKIVPAE 72
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSV 415
+ +CTVE + D + +DEIQ+ +D RG+ +T LL G++ E G ++
Sbjct: 73 ARWFSCTVEAMPLDRKVEFVAVDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLGAETI 130
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
++R++ E E R L L L RS +VAFS E++ + A
Sbjct: 131 RRLLRRLVPEAEIETRP----RLSQLSHAGPAKLSRL-PPRS--AIVAFSAAEVYAIAEA 183
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN+++ V F L
Sbjct: 184 VRTRRGG-CAVVMGRLSPRTRNAQVALY--QEKEVDFLVATDAIGMGLNMDVDHVAFAGL 240
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SK++G + + S+V QIAGRAGR
Sbjct: 241 SKFDGHRPRLLTASEVAQIAGRAGR 265
>gi|444914509|ref|ZP_21234652.1| ATP-dependent helicase [Cystobacter fuscus DSM 2262]
gi|444714741|gb|ELW55620.1| ATP-dependent helicase [Cystobacter fuscus DSM 2262]
Length = 812
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 143/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R +E GI PLRLLA EV+D+V A +G +L+TG+EK+L P
Sbjct: 16 LGPTNTGKTHRAIERMLEHDSGIIGLPLRLLAREVYDRVTARVGEGRVALMTGEEKRLPP 75
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPS 414
++ CTVE + D D +DEIQ+ + RG+ +T LL GL E G
Sbjct: 76 RPDYWICTVEAMPLDRSVDFLAVDEIQLAAHRERGHVFTDRLLHARGLR--ETWFLG--- 130
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
D +R + + + R L L+++ VVAFS ++E+
Sbjct: 131 -ADTMRPMVQALIPQASVKRATRLSQLRYSGSH---SLKSLPPRSAVVAFSADRVYELAE 186
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
++ + V+ GAL P TR Q ++ Q E LVA+DA+GMGLNL++ V F +
Sbjct: 187 SL-RRLRGGVAVVLGALSPRTRNAQVAMY--QAGEVQYLVATDAIGMGLNLDLNHVSFAA 243
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
LSKY+G + + ++ QIAGRAGR
Sbjct: 244 LSKYDGAEQRDLFPDELAQIAGRAGR 269
>gi|114764923|ref|ZP_01444096.1| helicase, putative [Pelagibaca bermudensis HTCC2601]
gi|114542635|gb|EAU45659.1| helicase, putative [Roseovarius sp. HTCC2601]
Length = 989
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 21/308 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I GPTN+GKT+ A++R + + G+ PLRLLA EV+DKV A +L+TG+E
Sbjct: 6 RIAAVLGPTNTGKTHYAIERMLGHRTGMIGLPLRLLAREVYDKVVAARGPGTVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL + E G
Sbjct: 66 RIVPPRAQYWICTVEAMPEGMGCDFVAIDEIQLCADPERGHVFTDRLLRMRGLHETLFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREI 469
++ + + G E + ER L LG + R + +V FS +
Sbjct: 126 SDTMRGPINALVK--GCEFIRR--ERMSQL-----GYLGSKKISRMPARSAIVGFSVDNV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + T V+ GAL P TR Q +L+ Q+ E D LVA+DA+GMGLNL+I
Sbjct: 177 YAIAELI-RRTKGGAAVVMGALSPRTRNAQVDLY--QNGEVDYLVATDAIGMGLNLDIDH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL--DYLIECLKQ 587
V F SL+K++G ++ P+ +++ QIAGRAGR + P TT + + D++
Sbjct: 234 VAFSSLTKFDGRRMRPLQPNELAQIAGRAGR--GMKPGTFGTTGDAGQIPDDWVEAITSH 291
Query: 588 PFEVVKKV 595
F ++K+
Sbjct: 292 SFTPLRKL 299
>gi|85709782|ref|ZP_01040847.1| ATP-dependent helicase [Erythrobacter sp. NAP1]
gi|85688492|gb|EAQ28496.1| ATP-dependent helicase [Erythrobacter sp. NAP1]
Length = 889
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 148/265 (55%), Gaps = 14/265 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+ +L+TG+E+ P
Sbjct: 17 LGPTNTGKTHLAIERMCAHSSGMMGFPLRLLAREVYDRVRAIKGDAQVALITGEERIEPP 76
Query: 358 FSNHIACTVE-MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
+ + CT E M + IDE Q+ +D RG+ +T LL +E + G ++
Sbjct: 77 DARYFCCTAEAMDRLGGGHAFVAIDEAQIGADPERGHIFTDRLLNARGREETMILGSATL 136
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+VR++ G E+ E+ RF L L L RS VVAFS +++ + A
Sbjct: 137 EPLVRQLIP--GAEMVER--PRFSTLTHAGSAKLSRLPR-RS--AVVAFSSEQVYAMAEA 189
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ + V+ GAL PETR +Q LF Q E D +VA+DA+GMGLNL+++ V F +L
Sbjct: 190 LRRFRGG-AAVVMGALSPETRNKQVELF--QSGEVDYIVATDAIGMGLNLDLQHVAFAAL 246
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
+K++G + + S++ QIAGRAGR
Sbjct: 247 TKFDGRRKRRLTPSEMAQIAGRAGR 271
>gi|56551115|ref|YP_161954.1| helicase [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542689|gb|AAV88843.1| helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4]
Length = 943
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 146/268 (54%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEK 353
+I GPTN+GKT+ A+QR G+ PLRLLA EV+D+V + +L+TG+EK
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGD 412
L + + CT E + + + A +DE+Q+ D RG+ +T LL L +E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQLGCDRERGHVFTDRLLNLRGREETMFLGS 129
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
++ ++R++ G E+ + RF L T L L RS VVAFS E++
Sbjct: 130 DALRPLLRRLIP--GIEIVSR--PRFSTLSYSGPTKLSRL-PPRS--AVVAFSAEEVYAT 182
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q +F Q E + LVA+DA+GMGLN+++ V F
Sbjct: 183 AEML-RRLRGGAAVVMGALSPRTRNAQVEMF--QAGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
SLSK++G ++ + ++ QIAGRAGR
Sbjct: 240 ASLSKFDGRQVRRLTIPEMAQIAGRAGR 267
>gi|159043335|ref|YP_001532129.1| helicase domain-containing protein [Dinoroseobacter shibae DFL 12]
gi|157911095|gb|ABV92528.1| helicase domain protein [Dinoroseobacter shibae DFL 12]
Length = 987
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 145/271 (53%), Gaps = 17/271 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I GPTN+GKT+ A+ R + + G+ PLRLLA EV+DK+ AL +L+TG+E
Sbjct: 6 RITAVLGPTNTGKTHYAIDRMLGYRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHL 409
+ + + CTVE + + D +DEIQ+ +D RG+ +T LL GL E
Sbjct: 66 RIVPDRVQYWVCTVEAMPQEIGADFLAVDEIQLCADPERGHVFTDRLLRARGLQ--ETLF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G + +R S + ERF L T + ++ +V FS +
Sbjct: 124 LG----AETMRGAISALVPKAQFLRRERFSELTY---TGAKKISRMKPRSAIVGFSVDNV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + C V+ GAL P TR Q +L+ Q+ + D LVA+DA+GMGLNL++
Sbjct: 177 YAMAELIRRQKGG-CAVVMGALSPRTRNAQVDLY--QNGDVDYLVATDAIGMGLNLDVAH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F SLSK++G ++ + +++ QIAGRAGR
Sbjct: 234 VAFSSLSKFDGRRMRALAPNELAQIAGRAGR 264
>gi|332557856|ref|ZP_08412178.1| MgpS [Rhodobacter sphaeroides WS8N]
gi|332275568|gb|EGJ20883.1| MgpS [Rhodobacter sphaeroides WS8N]
Length = 962
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 145/271 (53%), Gaps = 17/271 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
++ GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A +L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHL 409
+ + + + CTVE + + D +DEIQ+ D RG+ +T LL GL+ E
Sbjct: 66 RIVPERTQYWVCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLV--ETMF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G DV+R + + ERF L + + RS +V FS +
Sbjct: 124 LGS----DVMRGAIAALVPHVTFLRRERFSTLTYAGSKKISRM-PPRS--AIVGFSVDNV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + C V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+IR
Sbjct: 177 YAIAELIRRQKGG-CAVVMGALSPRTRNAQVALY--QNGDVDYLVATDAIGMGLNLDIRH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F S K++G ++ P+ ++ QIAGRAGR
Sbjct: 234 VAFSSTVKFDGRRMRPLFPHELGQIAGRAGR 264
>gi|114769352|ref|ZP_01446978.1| helicase, putative [Rhodobacterales bacterium HTCC2255]
gi|114550269|gb|EAU53150.1| helicase, putative [Rhodobacterales bacterium HTCC2255]
Length = 881
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 141/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA EV+DKV AL G+ L E+++VP
Sbjct: 12 LGPTNTGKTHYAIERMLARNSGIIGLPLRLLAREVYDKVVALRGLSSVALVTGEERIVPV 71
Query: 359 -SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVL 416
+ + CTVE + D + IDEIQ+ D RG+ +T LL + E G
Sbjct: 72 KARYWVCTVEAMPQDIGAEFVAIDEIQLCGDPERGHVFTDRLLNMRGSMETLFLG----A 127
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFEVKM 474
D +RK+ + + RF L G + R S +V FS ++ V
Sbjct: 128 DTMRKVIGQLIPNVEFIFRSRFSDL-----EYTGTKKTSRMPSRSAIVGFSVDNVYAVAE 182
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
+ + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+I V F S
Sbjct: 183 LLRRQKGG-AAVVMGALSPRTRNAQVELY--QNGDVDYLVATDAIGMGLNLDINHVAFSS 239
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
L+K++G ++ + +++ QIAGRAGR
Sbjct: 240 LTKFDGRRMRYLMPNELAQIAGRAGR 265
>gi|260753232|ref|YP_003226125.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258552595|gb|ACV75541.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 943
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 146/268 (54%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEK 353
+I GPTN+GKT+ A+QR G+ PLRLLA EV+D+V + +L+TG+EK
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGD 412
L + + CT E + + + A +DE+Q+ D RG+ +T LL L +E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQLGCDRERGHVFTDRLLNLRGREETMFLGS 129
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
++ ++R++ G E+ + RF L T L L RS VVAFS E++
Sbjct: 130 DALRPLLRRLIP--GIEIVSR--PRFSTLSYSGPTKLSRL-PPRS--AVVAFSAEEVYAT 182
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q +F Q E + LVA+DA+GMGLN+++ V F
Sbjct: 183 AEML-RRLRGGAAVVMGALSPRTRNAQVEMF--QAGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
SLSK++G ++ + ++ QIAGRAGR
Sbjct: 240 ASLSKFDGRQVRRLTIPEMAQIAGRAGR 267
>gi|126733169|ref|ZP_01748916.1| helicase, putative [Roseobacter sp. CCS2]
gi|126716035|gb|EBA12899.1| helicase, putative [Roseobacter sp. CCS2]
Length = 944
Score = 145 bits (366), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 145/270 (53%), Gaps = 15/270 (5%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL---GVYCSLLTGQ 351
+I GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A+ GV +L+TG+
Sbjct: 5 RITAVLGPTNTGKTHYAIERMLSYRTGVIGLPLRLLAREVYDRIVAVRGPGV-VALVTGE 63
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
E+ + P + + CTVE + D +DEIQ+ +D RG+ +T LL E
Sbjct: 64 ERIVPPRAAYWVCTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLNARGLHETLFL 123
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G + +R S + H ER L + + RS +V FS ++
Sbjct: 124 G----AETMRNAISAMVPDAHFMRRERMSQLTYSGSKKISRM-PARS--AIVGFSVENVY 176
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ + + T V+ GAL P TR Q ++ Q+ + D LVA+DA+GMGLNL+I V
Sbjct: 177 AIAELL-RRTKGGAAVVMGALSPRTRNAQVEMY--QNGDVDYLVATDAIGMGLNLDISHV 233
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SL+K++G ++ + ++ QIAGRAGR
Sbjct: 234 AFSSLTKFDGRRMRHLQPEELAQIAGRAGR 263
>gi|452965358|gb|EME70382.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 817
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 146/269 (54%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I+ GPTN+GKT+ A++R + G+ PLRLLA E +D++ L +L+TG+E
Sbjct: 3 RILAVLGPTNTGKTHFAMERMLGHASGMIGFPLRLLARENYDRIVRLKGASQVALVTGEE 62
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + P + CTVE + D +DEIQ+ +D RG+ +T LL + E G
Sbjct: 63 KIIPPHPRWLVCTVESMPLDRRVSFLAVDEIQLCADPERGHIFTDRLLHARGEAETLFLG 122
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ ++R++ G E + RF L LG L RS +VAFS E++
Sbjct: 123 AETIKPLIRRLVP--GVEFMSR--PRFSQLTHVGAKKLGRL-PPRS--VLVAFSASEVYA 175
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + + V+ GAL P TR Q L+ Q E D +VA+DA+GMGLN+++ V
Sbjct: 176 MAEFV-RRSRGGAAVVLGALSPRTRNAQVGLY--QAGEVDYIVATDAIGMGLNMDVDHVA 232
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +L K++G P+ +++ QIAGRAGR
Sbjct: 233 FAALRKFDGRAPRPLEPAEIAQIAGRAGR 261
>gi|254456336|ref|ZP_05069765.1| helicase, putative [Candidatus Pelagibacter sp. HTCC7211]
gi|207083338|gb|EDZ60764.1| helicase, putative [Candidatus Pelagibacter sp. HTCC7211]
Length = 826
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 152/277 (54%), Gaps = 21/277 (7%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLL 348
+ K KI GPTN+GKT+ A++ + G+ PLRLLA EV+DKV + + +L+
Sbjct: 1 MTKHKITAILGPTNTGKTHLAIETMLSFDTGMIGFPLRLLAREVYDKVIKKISIDKVALI 60
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEI- 407
TG+EK + + + CTVE + D+ + +DEIQM +D RG+ +T LL + +++
Sbjct: 61 TGEEKIIPQNAKYFLCTVESMPIDKHLEFVGVDEIQMCADHERGHIFTDRLLNMRGEKLT 120
Query: 408 HLCGDPSVLDVVRKICSETG----DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
L G ++ +++ K+ ++ + L + Y K + + ++A
Sbjct: 121 MLMGSNTIKNIISKLDADVKFINRNRLSKLTYTGHKKI-----------SRINRKTAIIA 169
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FS E++ + I + ++ G+L P+TR Q L+ Q + D LVA+DA+GMG+
Sbjct: 170 FSAEEVYAIAELIRRQKGG-AAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGI 226
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
N+++ V F +L K++G K+ + S++ QIAGRAGR
Sbjct: 227 NMDLDHVFFSNLKKFDGKKLRKLNLSEIGQIAGRAGR 263
>gi|126738722|ref|ZP_01754418.1| helicase, putative [Roseobacter sp. SK209-2-6]
gi|126719903|gb|EBA16610.1| helicase, putative [Roseobacter sp. SK209-2-6]
Length = 579
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 143/269 (53%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ A++R + + GI PLRLLA EV+DK+ AL +L+TG+E
Sbjct: 6 RLVAVLGPTNTGKTHYAIERMLAHRSGIMGFPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL-GLMADEIHLCG 411
+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL E G
Sbjct: 66 RIVPPRAQYWICTVEAMPPGMGCDFLAIDEIQLCADPERGHVFTERLLRARGTHETLFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
D +R + + ER LV + + +V FS ++
Sbjct: 126 ----ADTMRGPIAALVPGVEFLRRERMSELVYGGSK---KISRMPPRTAIVGFSVDNVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ +++ V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL+I V
Sbjct: 179 IAELLKRQKGG-AAVVMGALSPRTRNAQVALY--QNGEVDYLVATDAIGMGLNLDIDHVA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + SK++G ++ P+ +++ QIAGRAGR
Sbjct: 236 FSATSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|429206635|ref|ZP_19197900.1| ATP-dependent DNA helicase [Rhodobacter sp. AKP1]
gi|428190395|gb|EKX58942.1| ATP-dependent DNA helicase [Rhodobacter sp. AKP1]
Length = 955
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 145/271 (53%), Gaps = 17/271 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
++ GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A +L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHL 409
+ + + + CTVE + + D +DEIQ+ D RG+ +T LL GL+ E
Sbjct: 66 RIVPERTQYWVCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLV--ETMF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G DV+R + + ERF L + + RS +V FS +
Sbjct: 124 LGS----DVMRGAIAALVPHVTFLRRERFSTLTYAGSKKISRM-PPRS--AIVGFSVDNV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + C V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+IR
Sbjct: 177 YAIAELIRRQKGG-CAVVMGALSPRTRNAQVALY--QNGDVDYLVATDAIGMGLNLDIRH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F S K++G ++ P+ ++ QIAGRAGR
Sbjct: 234 VAFSSTVKFDGRRMRPLFPHELGQIAGRAGR 264
>gi|339504398|ref|YP_004691818.1| helicase-like protein [Roseobacter litoralis Och 149]
gi|338758391|gb|AEI94855.1| helicase-like protein [Roseobacter litoralis Och 149]
Length = 933
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 151/274 (55%), Gaps = 21/274 (7%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLLTGQ 351
++++ GPTN+GKT A++R + + G+ PLRLLA EV+D+ V A G +L+TG+
Sbjct: 5 KRVVAVLGPTNTGKTTYAIERMLGHRTGVIGLPLRLLAREVYDRCVAARGPSVVALVTGE 64
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIH 408
E+ + P + + CTVE + D +DEIQ+ +D RG+ +T LL GL E
Sbjct: 65 ERIVPPRAQYWVCTVEAMPDGMGCDFLAVDEIQLCADPERGHVFTDRLLRARGLH--ETL 122
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG--DLRNVRSGDCVVAFSR 466
G ++ +R + D + ER L T +G + ++ +V FS
Sbjct: 123 FLGADTMRGPIRALVP-NADFIQR---ERMSTL-----TYIGPKKISRMKPRSAIVGFSV 173
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
++ + I + V+ GAL P TR Q +++ Q+ E D LVA+DA+GMGLNL+
Sbjct: 174 ESVYAIAELIRRQKGG-AAVVMGALSPRTRNAQVDMY--QNGEVDYLVATDAIGMGLNLD 230
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ V F SL+K++G ++ P+ +++ QIAGRAGR
Sbjct: 231 VDHVAFSSLAKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|221638836|ref|YP_002525098.1| MgpS protein [Rhodobacter sphaeroides KD131]
gi|221159617|gb|ACM00597.1| MgpS [Rhodobacter sphaeroides KD131]
Length = 956
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 143/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A +L+TG+E+ +
Sbjct: 5 LGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPE 64
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPS 414
+ + CTVE + + D +DEIQ+ D RG+ +T LL GL+ E G
Sbjct: 65 RTQYWVCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLV--ETMFLGS-- 120
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
DV+R + + ERF L + + RS +V FS ++ +
Sbjct: 121 --DVMRGAIAALVPHVTFLRRERFSTLTYAGSKKISRM-PPRS--AIVGFSVDNVYAIAE 175
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + C V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+IR V F S
Sbjct: 176 LIRRQKGG-CAVVMGALSPRTRNAQVALY--QNGDVDYLVATDAIGMGLNLDIRHVAFSS 232
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
K++G ++ P+ ++ QIAGRAGR
Sbjct: 233 TVKFDGRRMRPLFPHELGQIAGRAGR 258
>gi|429767722|ref|ZP_19299909.1| helicase protein [Brevundimonas diminuta 470-4]
gi|429189881|gb|EKY30697.1| helicase protein [Brevundimonas diminuta 470-4]
Length = 832
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 155/309 (50%), Gaps = 24/309 (7%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQE 352
++ GPTN+GKT+ A++R + G+ PLRLLA E+++++ +L+TG+E
Sbjct: 5 RVTAILGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYERIVKRRGAASVALITGEE 64
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + P + CTVE + + D +DEIQ+++D RG+ +T+ LL E G
Sbjct: 65 KIVPPRPAYFVCTVEAMPLERSVDFLAVDEIQLVADPERGHVFTQRLLHARGRFETMFLG 124
Query: 412 DPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
++ ++R + + T D L Y K L + VVAFS
Sbjct: 125 AGTMAPLMRSLVPDAEIVTRDRLSTLSYAGSKKLT-----------RLPRRSAVVAFSTE 173
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
+++ + + + V+ G+L P TR Q LF Q E D LVA+DA+GMGLN+++
Sbjct: 174 QVYAIAELLRRQRGG-AAVVMGSLSPRTRNAQVELF--QSGEVDFLVATDAIGMGLNMDV 230
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR---GSIYPDGLTTTLNLDDLDYLIEC 584
V F L K++G + + +++ QIAGRAGR G+ G L+ D ++ ++E
Sbjct: 231 DHVAFAGLRKFDGRRTRWLHAAEIGQIAGRAGRHLRDGTFGVTGEAEELDEDLVEQVVEH 290
Query: 585 LKQPFEVVK 593
P E +
Sbjct: 291 RFDPVEAAE 299
>gi|254451167|ref|ZP_05064604.1| helicase, putative [Octadecabacter arcticus 238]
gi|198265573|gb|EDY89843.1| helicase, putative [Octadecabacter arcticus 238]
Length = 951
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 19/302 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ ++ +L+TG+E+ + P
Sbjct: 1 MGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVSVRGPSVVALVTGEERIVPP 60
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + CTVE + D D IDEIQ+ D RG+ +T LL + E G ++
Sbjct: 61 RAKYWVCTVEAMPQDIGADFVAIDEIQLCGDLDRGHVFTDRLLRMRGLHETLFMGAETMW 120
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+ + E ERF L + + RS +V FS ++ + +
Sbjct: 121 GAIASMVPEA----DFVKRERFSTLTYSGSKKISRM-PPRS--AIVGFSVENVYAIAELL 173
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q ++ Q+ + D LVA+DA+GMGLNL+I V F S++
Sbjct: 174 RRQKGG-AAVVMGALSPRTRNAQVEMY--QNGDVDYLVATDAIGMGLNLDIDHVAFSSIT 230
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVK 593
KY+G ++ + +++ QIAGRAGR +G+ G TL+ DD+ I+ F VK
Sbjct: 231 KYDGRRMRHLMPNELAQIAGRAGRFMNKGTFGVTGEAPTLD-DDVVQAIQ--NNQFAPVK 287
Query: 594 KV 595
K+
Sbjct: 288 KL 289
>gi|296284814|ref|ZP_06862812.1| ATP-dependent helicase [Citromicrobium bathyomarinum JL354]
Length = 873
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 146/265 (55%), Gaps = 14/265 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG+E+ P
Sbjct: 10 LGPTNTGKTHLAIERMCGHSSGAIGFPLRLLAREVYDRVVAIKGEKAVALITGEERIEPP 69
Query: 358 FSNHIACTVEMVSTDEM-YDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
+ + CT E + D + +DE+Q+ +D RG+ +T LL +E L G +
Sbjct: 70 DARYFLCTAEAMPHDGGGHAFVALDEVQLAADRERGHVFTDRLLNARGREETMLLGSSTA 129
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
V++ + EL E+ RF L L L RS VVAFS +++ +
Sbjct: 130 APVIKSLIPHA--ELIER--PRFSTLTHGGAKKLSRLPK-RS--AVVAFSSDQVYAIAEM 182
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ +H V+ GAL PETR +Q LF Q+ E D +VA+DA+GMGLNL++ V F SL
Sbjct: 183 LRRHRGG-AAVVMGALSPETRNRQVELF--QNGEVDYIVATDAIGMGLNLDVTHVAFASL 239
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
+K++G K + +++ QIAGRAGR
Sbjct: 240 AKFDGVKRRRLTPAEMAQIAGRAGR 264
>gi|259417878|ref|ZP_05741797.1| MgpS [Silicibacter sp. TrichCH4B]
gi|259346784|gb|EEW58598.1| MgpS [Silicibacter sp. TrichCH4B]
Length = 929
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 141/271 (52%), Gaps = 17/271 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ A+ R + + GI PLRLLA EV+DK+ L +L+TG+E
Sbjct: 6 RVVAVLGPTNTGKTHYAIDRMLGYRTGIMGFPLRLLAREVYDKIVKLRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHL 409
+ + P + + CTVE + D IDEIQ+ D RG+ +T LL GL E
Sbjct: 66 RIVPPRAQYWICTVEAMPEGMGCDFLAIDEIQLCGDPERGHVFTDRLLRSRGL--KETLF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G D +R S + ER LV + + +V FS +
Sbjct: 124 LG----ADTMRGPISALVPGVEFVRRERMSELVYAGSK---KISRMPPRTAIVGFSVDSV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL++
Sbjct: 177 YAIAELIRRQKGG-AAVVMGALSPRTRNAQVALY--QNGEVDYLVATDAIGMGLNLDVDH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F S SK++G ++ P+ +++ QIAGRAGR
Sbjct: 234 VAFSSTSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|384411707|ref|YP_005621072.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|335932081|gb|AEH62621.1| helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 943
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 146/268 (54%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEK 353
+I GPTN+GKT+ A+QR G+ PLRLLA EV+D+V + +L+TG+EK
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGD 412
L + + CT E + + + A +DE+Q+ D RG+ +T LL L +E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQLGCDRERGHVFTDRLLNLRGREETMFLGS 129
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
++ ++R++ G E+ + RF L T L L RS +VAFS E++
Sbjct: 130 DALRPLLRRLIP--GIEIVSR--PRFSTLSYSGPTKLSRL-PPRS--AIVAFSAEEVYAT 182
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q +F Q E + LVA+DA+GMGLN+++ V F
Sbjct: 183 AEML-RRLRGGAAVVMGALSPRTRNAQVEMF--QAGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
SLSK++G ++ + ++ QIAGRAGR
Sbjct: 240 ASLSKFDGRQVRRLTIPEMAQIAGRAGR 267
>gi|23014814|ref|ZP_00054612.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 384
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 147/271 (54%), Gaps = 17/271 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I+ GPTN+GKT+ A++R + G+ PLRLLA E +D++ + +L+TG+E
Sbjct: 3 RILAVLGPTNTGKTHFAMERMLAHASGMIGFPLRLLARENYDRIVKIKGAAQVALITGEE 62
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + P + CTVE + D +DEIQ+ +D RG+ +T LL + E G
Sbjct: 63 KIIPPHPRWLVCTVESMPLDRRVAFLAVDEIQLCADPERGHIFTDRLLHARGETETLFLG 122
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL--RNVRSGDCVVAFSRREI 469
++ ++R++ G E + RF L LG L R+V +VAFS E+
Sbjct: 123 AETIKPLIRRLVP--GVEFMSR--PRFSQLTHVGAKKLGRLPPRSV-----LVAFSAAEV 173
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + + + + V+ GAL P TR Q ++ Q E D +VA+DA+GMGLN+++
Sbjct: 174 YAMAEFVRR-SRGGAAVVLGALSPRTRNAQVGMY--QAGEVDYIVATDAIGMGLNMDVDH 230
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F SL K++G P+ +++ QIAGRAGR
Sbjct: 231 VAFASLRKFDGRSPRPLEPTEIAQIAGRAGR 261
>gi|254487437|ref|ZP_05100642.1| Helicase conserved C-terminal domain protein [Roseobacter sp.
GAI101]
gi|214044306|gb|EEB84944.1| Helicase conserved C-terminal domain protein [Roseobacter sp.
GAI101]
Length = 968
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 143/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT A++R + + G+ PLRLLA EV+DK+ AL +L+TG+E+ + P
Sbjct: 4 LGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEERIVPP 63
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPS 414
+ + CTVE + D+ +DEIQ+ +D RG+ +T LL GL E G
Sbjct: 64 RTQYWVCTVEAMPEGMGADLVAVDEIQLCADPERGHVFTDRLLRSRGLH--ETLFMG--- 118
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
D +R + + ER L + + +R RS +V FS ++ +
Sbjct: 119 -ADTMRGTIAALVPKAQFIKRERMSELTYVGQKKISRMRP-RS--AIVGFSVENVYAIAE 174
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + V+ GAL P TR Q ++ Q E D LVA+DA+GMGLNL++ V F +
Sbjct: 175 LIRRQKGG-AAVVMGALSPRTRNAQVEMY--QSGEVDYLVATDAIGMGLNLDVDHVAFSA 231
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
LSK++G ++ + +++ QIAGRAGR
Sbjct: 232 LSKFDGRRMRQLAPNELAQIAGRAGR 257
>gi|374290661|ref|YP_005037696.1| putative ATP-dependent DNA/RNA helicase [Azospirillum lipoferum 4B]
gi|357422600|emb|CBS85436.1| putative ATP-dependent DNA/RNA helicase [Azospirillum lipoferum 4B]
Length = 828
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/309 (32%), Positives = 157/309 (50%), Gaps = 25/309 (8%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEK 353
++ GPTN+GKTY A++R + + G+ PLRLLA E +D++ ++ +L+TG+EK
Sbjct: 1 MVAVLGPTNTGKTYLAIERMLGHRSGMIGFPLRLLARENYDRIVSIKGRQAVALVTGEEK 60
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLC 410
L P ++ CTVE + D D +DEIQ+ +D RG+ +T LL G++ E +
Sbjct: 61 ILPPNPSYWVCTVESMPLDRAVDFLAVDEIQLCADPERGHIFTDRLLNARGMV--ETMVL 118
Query: 411 GDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G S+ ++R++ + + + Y +K L + VVAFS
Sbjct: 119 GSDSMQPMIRRLVPKAEFISRPRFSQLTYAGYKKLT-----------RLPPRSAVVAFSA 167
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
+++ + I + V+ GAL P TR Q L+ Q E D LVA+DA+GMGLN++
Sbjct: 168 TDVYAIAEMIRRQRGG-TAVVLGALSPRTRNAQVGLY--QAGEVDYLVATDAIGMGLNMD 224
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586
+ V F + K++G + ++V QIAGRAGR G T + D D +
Sbjct: 225 VDHVAFARIVKFDGFAPRRLRPAEVAQIAGRAGRHMRDGTFGTTDEVGELDADLVNRVEN 284
Query: 587 QPFEVVKKV 595
FE VK +
Sbjct: 285 HEFETVKAL 293
>gi|126729322|ref|ZP_01745136.1| helicase, putative [Sagittula stellata E-37]
gi|126710312|gb|EBA09364.1| helicase, putative [Sagittula stellata E-37]
Length = 995
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 182/380 (47%), Gaps = 21/380 (5%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTG 350
+ +I GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A +L+TG
Sbjct: 4 RARIAAVLGPTNTGKTHYAIERMLAYRSGVIGLPLRLLAREVYDRIVAARGPSVVALVTG 63
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHL 409
+E+ + + + CTVE + D+ IDEIQ+ +D RG+ +T LL + E
Sbjct: 64 EERIVPARAQYWVCTVEAMPEGMGADLVAIDEIQLCADPERGHVFTDRLLRMRGTHETLF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREI 469
G D +R ++ + ER LV + L+ +V FS +
Sbjct: 124 LGS----DTMRGPIAQLVPGVEFVRRERMSQLVYTGSKKISRLQ---PRTAIVGFSVDNV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + +++ V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL+I
Sbjct: 177 YAIAELLKRQKGG-AAVVMGALSPRTRNAQVELY--QNREVDYLVATDAIGMGLNLDIDH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLK 586
V F S +K++G ++ P+ +++ QIAGRAGR G+ G + L+ D ++ +
Sbjct: 234 VAFSSTTKFDGRRMRPLMPNELAQIAGRAGRGMSDGTFGVTGEASPLSEDVVEAICNHSF 293
Query: 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVAN 646
P + ++ F ++ L Q+L K E L L + A+
Sbjct: 294 TPLKKLQWRSAALNFASIDALEHSLEVSPDHQILSKAREADDLRALRGLASEAEVSARAS 353
Query: 647 MLEKVQGLSLEDRFNFCFAP 666
+E V+ L ++ C P
Sbjct: 354 SVESVRLL-----WDVCRVP 368
>gi|260575511|ref|ZP_05843510.1| helicase domain protein [Rhodobacter sp. SW2]
gi|259022431|gb|EEW25728.1| helicase domain protein [Rhodobacter sp. SW2]
Length = 877
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 164/310 (52%), Gaps = 25/310 (8%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
++ GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ AL +L+TG+E
Sbjct: 7 RVTAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 66
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHL 409
+ + + + CTVE + + D IDEIQ+ +D RG+ +T LL GL+ D + L
Sbjct: 67 RIVPDRTQYWVCTVEAMPLEIGADFVAIDEIQLCADPERGHVFTDRLLRARGLL-DTMFL 125
Query: 410 CGD---PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
D P++ +V + ERF L + + RS +V FS
Sbjct: 126 GSDSMRPAIAALVPGV--------QFSRRERFSTLTWNGSKKISRM-PARS--AIVGFSV 174
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
++ + I + C V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+
Sbjct: 175 ENVYAIAELIRRQKGG-CAVVMGALSPRTRNAQVELY--QNGDVDYLVATDAIGMGLNLD 231
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586
I V F + +K++G ++ + ++ QIAGRAGR G+T + D D +IE ++
Sbjct: 232 IGHVAFSATAKFDGRRMRALFPHELGQIAGRAGRYLEPGSFGVTGEAQVLD-DEVIEAIE 290
Query: 587 -QPFEVVKKV 595
F V+K+
Sbjct: 291 NHRFAPVRKL 300
>gi|288959505|ref|YP_003449846.1| helicase C-terminal domain-containing protein [Azospirillum sp.
B510]
gi|288911813|dbj|BAI73302.1| helicase C-terminal domain protein [Azospirillum sp. B510]
Length = 846
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 158/309 (51%), Gaps = 25/309 (8%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV------NALGVYCSLLT 349
++ GPTN+GKTY A++R + + G+ PLRLLA E +D++ NA+ +L+T
Sbjct: 18 VVAVLGPTNTGKTYLAIERMLGHRSGMIGFPLRLLARENYDRIVRIKGRNAV----ALVT 73
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADE 406
G+EK L P ++ CTVE + D D +DEIQ+ +D RG+ +T LL G++ E
Sbjct: 74 GEEKILPPNPSYWVCTVESMPLDRPVDFLAVDEIQLCADPERGHIFTDRLLNARGMV--E 131
Query: 407 IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
+ G S+ ++R++ + RF L L L RS VVAFS
Sbjct: 132 TMVLGSDSMQPMIRRLVPKA----EFVSRPRFSQLTYAGHRKLTRL-PPRS--AVVAFSA 184
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
+++ + I + V+ GAL P TR Q L+ Q E D LVA+DA+GMGLN++
Sbjct: 185 TDVYAIAELIRRQRGG-TAVVLGALSPRTRNAQVGLY--QAGEVDYLVATDAIGMGLNMD 241
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586
+ V F + K++G + ++V QIAGRAGR G T + D D +
Sbjct: 242 VDHVAFARIVKFDGFAPRRLRPAEVAQIAGRAGRHMRDGTFGTTDEVGELDADLVSRVEN 301
Query: 587 QPFEVVKKV 595
FE VK +
Sbjct: 302 HEFETVKAL 310
>gi|114326980|ref|YP_744136.1| ATP-dependent DNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114315154|gb|ABI61214.1| ATP-dependent DNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 864
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 142/265 (53%), Gaps = 17/265 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A+ R + GI PLRLLA E +D++ A +L+TG+EK + P
Sbjct: 25 GPTNTGKTHLAMDRMLAHASGIIGFPLRLLARENYDRMVATKGADRVALITGEEKIIPPG 84
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSV 415
+ ACTVE + D + +DEIQ+ +D RG+ +T LL G++ E G ++
Sbjct: 85 ARWFACTVEAMPLDRAVEWIGVDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLGAETI 142
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+++ + + E R L LG L RS +VAFS +++ +
Sbjct: 143 RPLLKSLVPQAEIETRP----RLSELRHAGAAKLGRL-PPRS--AIVAFSAGDVYAIAEL 195
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
I + C V+ G L P TR Q L+ QD E D LVA+DA+GMGLN+++ V F L
Sbjct: 196 IRRRKGG-CAVVMGRLSPRTRNAQVALY--QDKEVDFLVATDAIGMGLNMDVDHVAFARL 252
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SK++G + + ++ QIAGRAGR
Sbjct: 253 SKFDGHRARRLAAPEIAQIAGRAGR 277
>gi|397676869|ref|YP_006518407.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397558|gb|AFN56885.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 943
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 146/268 (54%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEK 353
+I GPTN+GKT+ A+QR G+ PLRLLA EV+D+V + +L+TG+EK
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGD 412
L + + CT E + + + A +DE+Q+ D RG+ +T LL L +E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQLGCDRERGHVFTDRLLNLRGREETMFLGS 129
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
++ ++R++ G E+ + RF L T L L RS VVAFS E++
Sbjct: 130 DALRPLLRRLIP--GIEIVSR--PRFSTLSYSGPTKLSRL-PPRS--AVVAFSAEEVYAT 182
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q +F Q E + LVA+DA+GMGLN+++ V F
Sbjct: 183 AEML-RRLRGGAAVVMGALSPRTRNAQVEMF--QAGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
SL+K++G ++ + ++ QIAGRAGR
Sbjct: 240 ASLTKFDGRQVRRLTIPEMAQIAGRAGR 267
>gi|389878914|ref|YP_006372479.1| Helicase-like protein [Tistrella mobilis KA081020-065]
gi|388529698|gb|AFK54895.1| Helicase-like protein [Tistrella mobilis KA081020-065]
Length = 880
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 147/265 (55%), Gaps = 15/265 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+D+V A G +L+TG+EK + P
Sbjct: 15 LGPTNTGKTHLAVERMLAHRTGMMGFPLRLLAREVYDRVARAKGADKVALITGEEKIVPP 74
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + CTVE + D + +DEIQ+ +D RG+ +T LL E G ++
Sbjct: 75 EARYFLCTVESMPLDLGVEFLCVDEIQLAADPDRGHIFTDRLLHARGFAETMFLGAETIA 134
Query: 417 DVVRKICSETGDELHEQHYERFKPLV-VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
++R++ G E+ + R LV AK+L + +VAFS +++ +
Sbjct: 135 PLMRRLLP--GIEIDSR--PRMSKLVYTGAKSLT----RLPPRTAIVAFSAADVYAIA-E 185
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
I + V+ GAL P TR Q ++ Q+ E D LVA+DA+GMGLNL++ V F +
Sbjct: 186 IMRRQRGGAAVVMGALSPRTRNAQVEMY--QEGEVDFLVATDAIGMGLNLDVDHVCFAAT 243
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + P+ ++ QIAGRAGR
Sbjct: 244 RKFDGRDLRPLTAQELAQIAGRAGR 268
>gi|110679117|ref|YP_682124.1| helicase [Roseobacter denitrificans OCh 114]
gi|109455233|gb|ABG31438.1| helicase, putative [Roseobacter denitrificans OCh 114]
Length = 944
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 152/274 (55%), Gaps = 21/274 (7%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLLTGQ 351
++++ GPTN+GKT A++R + + G+ PLRLLA EV+D+ V A G +L+TG+
Sbjct: 5 KRVVAVLGPTNTGKTTYAIERMLGHRTGVIGLPLRLLAREVYDRCVVARGPSVVALVTGE 64
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIH 408
E+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL GL E
Sbjct: 65 ERIVPPRAQYWVCTVEAMPEGMGCDFLAIDEIQLCADPERGHVFTDRLLRARGLH--ETL 122
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG--DLRNVRSGDCVVAFSR 466
G ++ +R + E ++ ER L + +G + ++ +V FS
Sbjct: 123 FLGADTMRGPIRALVPNA--EFIQR--ERMSTL-----SYIGPKKISRMKPRSAIVGFSV 173
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
++ + I + V+ GAL P TR Q +++ Q+ E D LVA+DA+GMGLNL+
Sbjct: 174 ENVYAIAELIRRQKGG-AAVVMGALSPRTRNAQVDMY--QNGEVDYLVATDAIGMGLNLD 230
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ V F SL+K++G ++ P+ +++ QIAGRAGR
Sbjct: 231 VDHVAFSSLTKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|399991959|ref|YP_006572199.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398656514|gb|AFO90480.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 1005
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 142/269 (52%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ A++R + + G+ PLRLLA EV+DKV A +L+TG+E
Sbjct: 11 RVLAVLGPTNTGKTHYAIERMLGHRTGVMGFPLRLLAREVYDKVVAARGPSVVALVTGEE 70
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCG 411
+ + P + + CTVE + D +DEIQ+ +D RG+ +T R L E G
Sbjct: 71 RIVPPRAQYWICTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLRARGTQETLFLG 130
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
D +R + + ER LV L + + +V FS ++
Sbjct: 131 ----ADTMRGPIAALVPGVQFLRRERLSDLVYSGSK---KLSRMPARTAIVGFSIDNVYA 183
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL+I V
Sbjct: 184 IAELLRRQKGG-AAVVMGALSPRTRNAQVELY--QNGEVDYLVATDAIGMGLNLDIDHVA 240
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SL+K++G ++ + +++ QIAGRAGR
Sbjct: 241 FSSLTKFDGRRMRQLAPNELAQIAGRAGR 269
>gi|400753596|ref|YP_006561964.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis 2.10]
gi|398652749|gb|AFO86719.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis 2.10]
Length = 1005
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 142/269 (52%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ A++R + + G+ PLRLLA EV+DKV A +L+TG+E
Sbjct: 11 RVLAVLGPTNTGKTHYAIERMLGHRTGVMGFPLRLLAREVYDKVVAARGPSVVALVTGEE 70
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCG 411
+ + P + + CTVE + D +DEIQ+ +D RG+ +T R L E G
Sbjct: 71 RIVPPRAQYWICTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLRARGTQETLFLG 130
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
D +R + + ER LV L + + +V FS ++
Sbjct: 131 ----ADTMRGPIAALVPGVQFLRRERLSDLVYSGSK---KLSRMPARTAIVGFSIDNVYA 183
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL+I V
Sbjct: 184 IAELLRRQKGG-AAVVMGALSPRTRNAQVELY--QNGEVDYLVATDAIGMGLNLDIDHVA 240
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SL+K++G ++ + +++ QIAGRAGR
Sbjct: 241 FSSLTKFDGRRMRQLAPNELAQIAGRAGR 269
>gi|149185283|ref|ZP_01863600.1| ATP-dependent helicase [Erythrobacter sp. SD-21]
gi|148831394|gb|EDL49828.1| ATP-dependent helicase [Erythrobacter sp. SD-21]
Length = 837
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/273 (36%), Positives = 154/273 (56%), Gaps = 20/273 (7%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQE 352
KI GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG++
Sbjct: 5 KITAVLGPTNTGKTHLAIERLCAHSSGAMGFPLRLLAREVYDRVVAIKGEKEVALITGEQ 64
Query: 353 KKLVPFSNHIACTVEMV--STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHL 409
+ P + ++ CTVE + S +E VA +DE Q+ +D RG+ +T LL +E L
Sbjct: 65 RIEPPGARYLCCTVEAMPRSANERAFVA-LDEAQLSADRERGHVFTDRLLNARGREETML 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG--DLRNVRSGDCVVAFSRR 467
G ++ +VR + + E+ E+ RF L T +G L + +VAFS
Sbjct: 124 LGAATLAPMVRSLLPQA--EITER--ARFSTL-----THIGPRKLSRLPPRSAIVAFSAE 174
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
+++ V + + V+ GAL PETR +Q LF Q+ E D +VA+DA+GMGLNL++
Sbjct: 175 QVYAVAEMLRRFRGG-AAVVMGALSPETRNRQVELF--QNGEVDYIVATDAIGMGLNLDV 231
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F L+K++G ++ + +++ QIAGRAGR
Sbjct: 232 SHVAFAGLTKFDGVRMRRLFPAEMAQIAGRAGR 264
>gi|149916592|ref|ZP_01905106.1| helicase-like protein [Roseobacter sp. AzwK-3b]
gi|149809519|gb|EDM69379.1| helicase-like protein [Roseobacter sp. AzwK-3b]
Length = 958
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 146/269 (54%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLLTGQE 352
+ + GPTN+GKT+ A++R + + GI PLRLLA EV+D+ V A G +L+TG+E
Sbjct: 6 RTLAVLGPTNTGKTHFAIERMLGYRTGIIGLPLRLLAREVYDRIVRARGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ + + + CTVE + D IDEIQ+ +D RG+ +T LL + E G
Sbjct: 66 RIVPERTQYWVCTVEAMPEGLGADFVAIDEIQLCADPERGHVFTDRLLRMRGLKETQFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ + + G E + ER L + + RS +V FS ++
Sbjct: 126 AATMRGAIAALVP--GVEFLSR--ERMSQLAYSGSKKISKM-PARS--AIVGFSVDNVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ +++ V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+I V
Sbjct: 179 IAEVLKRQKGG-AAVVMGALSPRTRNAQVALY--QNGDVDYLVATDAIGMGLNLDIDHVA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SLSK++G ++ P+ +++ QIAGRAGR
Sbjct: 236 FSSLSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|126727499|ref|ZP_01743333.1| helicase, putative [Rhodobacterales bacterium HTCC2150]
gi|126703279|gb|EBA02378.1| helicase, putative [Rhodobacterales bacterium HTCC2150]
Length = 930
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 156/299 (52%), Gaps = 20/299 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
K++ GPTN+GKT+ A++R + K G+ PLRLLA EV+DK+ AL +L+TG+E
Sbjct: 21 KVVAVLGPTNTGKTHYAIERMLAHKSGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 80
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGD 412
+ + + + TVE + + D +DEIQ+ +D RG+ +T LL H G
Sbjct: 81 RIVPDRAAYWVATVEAMPQEIGADFVAVDEIQLCADPERGHVFTDRLL-------HARGR 133
Query: 413 PSVL----DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L D +R + E + +RF L + ++ RS +V FS
Sbjct: 134 HETLFMGADTMRSAIAGLIPEAQFLYRDRFSTLTYTGSRKISRMKP-RS--AIVGFSVDS 190
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q ++ + D E+ LVA+DA+GMGLNL+I
Sbjct: 191 VYSIAEWIRRQKGG-AAVVMGALSPRTRNAQVEMYQNGDVEY--LVATDAIGMGLNLDID 247
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ F K++G ++ P+ +++ QIAGRAGR + G+T D D L+E +++
Sbjct: 248 HIAFSGTVKFDGHRMRPLQPNEMAQIAGRAGRYMNAGTFGVTGEAEPLD-DALVEAIEK 305
>gi|407787113|ref|ZP_11134255.1| helicase-like protein [Celeribacter baekdonensis B30]
gi|407199939|gb|EKE69951.1| helicase-like protein [Celeribacter baekdonensis B30]
Length = 983
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 155/304 (50%), Gaps = 13/304 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ A +L+TG+E
Sbjct: 10 RITAVLGPTNTGKTHYAIERMLAYRTGVIGLPLRLLAREVYDKIVARRGPSVVALVTGEE 69
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ + + + CTVE + T D +DEIQ+ +D RG+ +T LL E G
Sbjct: 70 RIVPARAQYWVCTVEAMPTGMGADFLAVDEIQLCADPERGHVFTDRLLNARGLHETLFMG 129
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
S+ V+ + + H +RF L + + + +V FS +++
Sbjct: 130 SDSMRSVIANLVPKA----QFMHRDRFSRLTYSGSK---KISRMPARAAIVGFSVDDVYA 182
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q ++ Q+ E D LVA+DA+GMGLNL++ V
Sbjct: 183 IAELLRRQKGG-AAVVMGALSPRTRNAQVEMY--QNGEVDYLVATDAIGMGLNLDVTHVA 239
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
F S K++G ++ + +++ QIAGRAGR + G+T D + + + F
Sbjct: 240 FSSTIKFDGRRMRHLAPNELAQIAGRAGRYQTDGTFGVTGEAEPFDEEVTLAIEEHRFTP 299
Query: 592 VKKV 595
+KK+
Sbjct: 300 IKKL 303
>gi|89069367|ref|ZP_01156726.1| helicase, putative [Oceanicola granulosus HTCC2516]
gi|89045134|gb|EAR51205.1| helicase, putative [Oceanicola granulosus HTCC2516]
Length = 999
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 157/307 (51%), Gaps = 20/307 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG-VYCSLLTGQE 352
+I GPTN+GKT+ A++R + + GI PLRLLA EV+D+ V A G +L+TG+E
Sbjct: 6 RITAVLGPTNTGKTHYAIERMLGHRTGIIGLPLRLLAREVYDRIVRARGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGD 412
+ + + + CTVE + D +DEIQ+ +D RG+ +T LL H G
Sbjct: 66 RIVPGRAQYWVCTVEAMP-QMAADFVAVDEIQLCADPERGHVFTDRLL-------HARGH 117
Query: 413 PSVL----DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L + +R + ++ ERF L + + RS +V FS
Sbjct: 118 HETLFMGAETMRSAIAAMVPKVQFMKRERFSQLTYSGSKKISRMPG-RS--AIVGFSVEN 174
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q +++ Q+ + D LVA+DA+GMGLNL+I
Sbjct: 175 VYAIAELLRRQKGG-AAVVMGALSPRTRNAQVDMY--QNGDVDYLVATDAIGMGLNLDIN 231
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F +LSK++G ++ P+ ++ QIAGRAGR + G+T D D +
Sbjct: 232 HVAFSALSKFDGRRMRPLIPGELAQIAGRAGRHMNHGTFGVTGEAPELDEDVVEAITNHS 291
Query: 589 FEVVKKV 595
F VKK+
Sbjct: 292 FAPVKKL 298
>gi|167648077|ref|YP_001685740.1| helicase domain-containing protein [Caulobacter sp. K31]
gi|167350507|gb|ABZ73242.1| helicase domain protein [Caulobacter sp. K31]
Length = 851
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 154/301 (51%), Gaps = 13/301 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
K+ GPTN+GKT+ A++R + G+ PLRLLA E++D++ L +L+TG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRIVKLRGKASVALITGEE 71
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + P + + CTVE + + IDEIQ+ +D RG+ +T LL E L G
Sbjct: 72 KIVPPRAAYFVCTVEAMPLTREVEFLAIDEIQLCADPERGHIFTHRLLHARGRFETMLLG 131
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ ++R++ + E+ + ERF L L L RS VVAFS ++
Sbjct: 132 AGTMAPLIRRLLPDA--EIVTR--ERFSNLTYSGSKKLTRLPR-RS--AVVAFSTDAVYA 184
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ G+L P TR Q L+ Q E D LVA+DA+GMGLN+++ V
Sbjct: 185 IAELIRRQRGG-AAVVMGSLSPRTRNAQVALY--QSGEVDFLVATDAIGMGLNMDVDHVA 241
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
F L K++G + + +V QIAGRAGR G+T D D + + FE
Sbjct: 242 FAGLRKFDGKRTRWLYPQEVGQIAGRAGRYTRDGTFGVTGDCEEMDEDLVESVVNHQFEP 301
Query: 592 V 592
V
Sbjct: 302 V 302
>gi|209965703|ref|YP_002298618.1| ATP-dependent helicase MgpS [Rhodospirillum centenum SW]
gi|209959169|gb|ACI99805.1| ATP-dependent helicase MgpS [Rhodospirillum centenum SW]
Length = 1144
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 159/297 (53%), Gaps = 18/297 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKTY A++R + + G+ PLRLLA E +DKV L +L+TG+E
Sbjct: 17 RVMAVLGPTNTGKTYLAMERMLAHRSGMIGFPLRLLARENYDKVVRLKGPKAVALVTGEE 76
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCG 411
K + P + CTVE + D +DEIQ+ +D RG+ +T R L ++E G
Sbjct: 77 KIIPPAPQYWVCTVESMPLDRQVQFLAVDEIQLCADPERGHIFTDRLLHARGSEETMFLG 136
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
+V +++K+ RF L L L RS +VAFS +++
Sbjct: 137 ADTVRGLIQKLVPRA----EYISRPRFSNLSHAGHKKLTRL-PPRS--AIVAFSVTDVYA 189
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + + V+ GAL P TR Q ++ Q + D LVA+DAVGMGLN+++ V
Sbjct: 190 MAEMV-RRSRGGTAVVMGALSPRTRNAQVAMY--QAGDVDYLVATDAVGMGLNMDVDSVW 246
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL-TTTLNLDDLD-YLIECLK 586
F LSK++G + + ++V QIAGRAGR S DGL TT + + +D L+E ++
Sbjct: 247 FARLSKFDGHQPRRLKATEVAQIAGRAGRHLS---DGLFGTTWDCEPMDEELVEAVE 300
>gi|407798103|ref|ZP_11145016.1| helicase-like protein [Oceaniovalibus guishaninsula JLT2003]
gi|407059940|gb|EKE45863.1| helicase-like protein [Oceaniovalibus guishaninsula JLT2003]
Length = 1013
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 16/305 (5%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A +L+TG+E
Sbjct: 14 RITAVLGPTNTGKTHYAIERMLGYRTGVIGLPLRLLAREVYDRIVAARGPSVVALVTGEE 73
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCG 411
+ + + + CTVE + D +DEIQ+ +D RG+ +T R L E G
Sbjct: 74 RIVPERTQYWVCTVEAMPEGMGADFLAVDEIQLCADPERGHVFTDRLLRSRGTHETLFLG 133
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ + + + ERF L+ + +R RS +V FS ++
Sbjct: 134 AETMRGAIAALVPQA----QFLRRERFSTLMYTGSRKISRMRP-RS--AIVGFSVENVYA 186
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ GAL P TR Q +++ Q+ + D LVA+DA+GMGLNL+I V
Sbjct: 187 IAELIRRQKGG-AAVVMGALSPRTRNAQVDMY--QNGDVDFLVATDAIGMGLNLDIDHVA 243
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR---RGSIYPDGLTTTLNLDDLDYLIECLKQP 588
F +K++G ++ P+ +++ QIAGRAGR G+ G L+ D ++ + E P
Sbjct: 244 FSGTTKFDGRRMRPLMPNELAQIAGRAGRYMQDGTFGVTGEAAPLDEDVVEAITEHRFAP 303
Query: 589 FEVVK 593
+V++
Sbjct: 304 LKVLQ 308
>gi|99080414|ref|YP_612568.1| helicase-like protein [Ruegeria sp. TM1040]
gi|99036694|gb|ABF63306.1| helicase-like protein [Ruegeria sp. TM1040]
Length = 984
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 142/270 (52%), Gaps = 15/270 (5%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+++ GPTN+GKT+ A+ R + + G+ PLRLLA EV+DK+ L +L+TG+E
Sbjct: 6 RVVAVLGPTNTGKTHYAIDRMLGYRTGVMGFPLRLLAREVYDKIVKLRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGL--MADEIHLC 410
+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL M + + L
Sbjct: 66 RIVPPRAQYWICTVEAMPEGMGCDFLAIDEIQLCADPERGHVFTDRLLRSRGMKETLFLG 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
D +R + + ER LV + + +V FS ++
Sbjct: 126 AD-----TMRGPIAALVPGVEFVRRERMSELVYAGSK---KISRMPPRTAIVGFSVDSVY 177
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ E D LVA+DA+GMGLNL++ V
Sbjct: 178 AIAELIRRQKGG-AAVVMGALSPRTRNAQVALY--QNGEVDYLVATDAIGMGLNLDVDHV 234
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + SK++G ++ P+ +++ QIAGRAGR
Sbjct: 235 AFSATSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|384919755|ref|ZP_10019792.1| helicase-like protein [Citreicella sp. 357]
gi|384466357|gb|EIE50865.1| helicase-like protein [Citreicella sp. 357]
Length = 994
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 17/273 (6%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTG 350
+ +I GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ A +L+TG
Sbjct: 4 RARIAAVLGPTNTGKTHYAIERMLGHRTGMIGLPLRLLAREVYDKIVAARGPSVVALVTG 63
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHL 409
+E+ + P + + CTVE + D IDEIQ+ +D RG+ +T LL + E
Sbjct: 64 EERIVPPRAQYWVCTVEAMPEGMGVDFIGIDEIQLCADPERGHVFTDRLLRMRGLHETLF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRR 467
G D +R S+ + ER L + LG + R + +V FS
Sbjct: 124 MGS----DTMRGPISQLVRGVEFIRRERMSQL-----SYLGSKKISRMPARSAIVGFSVD 174
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
++ + I + T V+ GAL P TR Q +L+ Q+ + D LVA+DA+GMGLNL+I
Sbjct: 175 NVYAIAELI-RRTKGGAAVVMGALSPRTRNAQVDLY--QNGDVDYLVATDAIGMGLNLDI 231
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ F +L+K++G ++ + +++ QIAGRAGR
Sbjct: 232 DHIAFSALTKFDGRRMRDLQPNELAQIAGRAGR 264
>gi|392380713|ref|YP_005029909.1| putative ATP-dependent DNA/RNA helicase [Azospirillum brasilense
Sp245]
gi|356875677|emb|CCC96425.1| putative ATP-dependent DNA/RNA helicase [Azospirillum brasilense
Sp245]
Length = 824
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 157/305 (51%), Gaps = 17/305 (5%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV--YCSLLTGQEK 353
++ GPTN+GKT+ A++R + + G+ PLRLLA E +D++ ++ +L+TG+EK
Sbjct: 1 MVAVLGPTNTGKTHLAIERMLGHRTGMIGFPLRLLARENYDRIVSIKGKNAVALVTGEEK 60
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLC 410
L P ++ CTVE + D D +DE+Q+ +D RG+ +T LL GL+ E
Sbjct: 61 ILPPSPSYWVCTVESMPLDRAVDFLAVDEVQLCADPERGHIFTDRLLNARGLV--ETMFL 118
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G +V ++R++ E + RF L L L RS CVVAFS +++
Sbjct: 119 GSDTVQPLIRRLVPRA--EFISR--PRFSQLTYAGYRKLTRL-PPRS--CVVAFSATDVY 171
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q E D LVA+DA+GMGLN+++ V
Sbjct: 172 ALAEMIRRQRGG-TAVVLGALSPRTRNAQVGLY--QAGEVDYLVATDAIGMGLNMDVDHV 228
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F + K++G + +V QIAGRAGR G T + + D + FE
Sbjct: 229 AFARIVKFDGFAPRRLRAPEVAQIAGRAGRHMRDGTFGTTDEVGELEADVVDRVENHQFE 288
Query: 591 VVKKV 595
+K +
Sbjct: 289 TIKTL 293
>gi|163760001|ref|ZP_02167085.1| hypothetical protein HPDFL43_17261 [Hoeflea phototrophica DFL-43]
gi|162282959|gb|EDQ33246.1| hypothetical protein HPDFL43_17261 [Hoeflea phototrophica DFL-43]
Length = 1064
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 157/310 (50%), Gaps = 27/310 (8%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQ 351
R + GPTN+GKT+ A++R G+ PLRLLA EV+ + V+ +GV + SL+TG+
Sbjct: 18 RGVTAVLGPTNTGKTHYAIERMASYSSGVIGLPLRLLAREVYGRMVDKVGVQHVSLVTGE 77
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + IDE+Q+ D RG+ +T +L L +E L
Sbjct: 78 EKISPPGARYAVCTVEAMPQRTDAAFVAIDEVQIAGDLERGHVFTDRILSLRGREETLLL 137
Query: 411 GDPSVLDVVRKICSETG----DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G +V ++ ++ L E HY K + + RS +VAFS
Sbjct: 138 GSLTVRGILEQLLPGITVIERPRLSELHYAGSKKITRLPR---------RS--AIVAFSA 186
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ + + + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+
Sbjct: 187 DEVYAIAELVRRQRGG-AAVVLGALSPRTRNAQVELY--QNGDVDYLVATDAIGMGLNLD 243
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR---GSIYPDGLTTTLNLDDLDYLIE 583
+ V F K++G + S+ QIAGRAGR G+ G + L+ DDL + +E
Sbjct: 244 VDHVAFAQERKFDGHSYRQLTASEFGQIAGRAGRHLRDGTFGVTGQVSPLH-DDLVHRLE 302
Query: 584 CLKQPFEVVK 593
FE VK
Sbjct: 303 S--HVFEPVK 310
>gi|254418943|ref|ZP_05032667.1| Helicase conserved C-terminal domain protein [Brevundimonas sp.
BAL3]
gi|196185120|gb|EDX80096.1| Helicase conserved C-terminal domain protein [Brevundimonas sp.
BAL3]
Length = 838
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 154/306 (50%), Gaps = 21/306 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQE 352
++ GPTN+GKT+ A++R + G+ PLRLLA E+++++ +L+TG+E
Sbjct: 12 RVTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYERIVRQRGAAAVALITGEE 71
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + P ++ CTVE + + + IDEIQ+++D RG+ +T+ LL E G
Sbjct: 72 KIVPPRPHYFVCTVEAMPLERSVEFLAIDEIQLVADPERGHVFTQRLLHARGRFETMFLG 131
Query: 412 DPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
++ ++R++ + T D L Y K L + +VAFS
Sbjct: 132 AGTMEPLIRRLVPDVEIVTRDRLSTLSYAGSKKLT-----------RLPRRSAIVAFSTE 180
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
++ + I + V+ G+L P TR Q L+ Q E D LVA+DA+GMGLN+++
Sbjct: 181 RVYAIAELIRRQRGG-AAVVMGSLSPRTRNAQVALY--QSGEVDFLVATDAIGMGLNMDV 237
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
V F L K++G + + ++ QIAGRAGR G+T D D + + ++
Sbjct: 238 DHVAFAGLRKFDGRRTRWLHAHEIGQIAGRAGRHLRDGTFGVTAEAEDLDADLVEQVVEH 297
Query: 588 PFEVVK 593
F+ V+
Sbjct: 298 RFDPVE 303
>gi|406922774|gb|EKD60142.1| hypothetical protein ACD_54C00916G0001, partial [uncultured
bacterium]
Length = 846
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/305 (31%), Positives = 157/305 (51%), Gaps = 25/305 (8%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ A +L+TG+E+ +
Sbjct: 11 LGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVASRGPSVVALVTGEERIVPD 70
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGD-- 412
+ + CTVE + D D +DEIQ+ +D RG+ +T LL GL E G
Sbjct: 71 RAQYWVCTVEAMPLDIGADFVAVDEIQLCADPDRGHVFTDRLLRARGL--HETLFMGAET 128
Query: 413 --PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
P++ +++ + D E Y K + + +V FS ++
Sbjct: 129 MRPAIAGLIKGVQFLKRDRFSELTYTGSK-----------KISRMPERSAIVGFSVENVY 177
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + T C V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+I+ +
Sbjct: 178 AIAELI-RRTKGGCAVVMGALSPRTRNAQVALY--QNGDVDYLVATDAIGMGLNLDIKHI 234
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F + SK++G ++ + ++ QIAGRAGR G+T + D + + + F+
Sbjct: 235 AFAATSKFDGRRMRALYPQELAQIAGRAGRHLENGTFGVTGEVRPLDDETVAAIQEHRFD 294
Query: 591 VVKKV 595
V+K+
Sbjct: 295 PVRKL 299
>gi|399073278|ref|ZP_10750326.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398041644|gb|EJL34699.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 852
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 153/301 (50%), Gaps = 13/301 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
K+ GPTN+GKT+ A++R + G+ PLRLLA E++D++ L +L+TG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRIVKLRGKASVALITGEE 71
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K P + + CTVE + + +DEIQ+ +D RG+ +T LL E L G
Sbjct: 72 KIAPPRAAYFVCTVEAMPLTREVEFLAVDEIQLCADPERGHIFTHRLLHARGRYETMLLG 131
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ ++R++ + E+ + ERF L L L RS VVAFS ++
Sbjct: 132 AGTMAPLIRRLLPDA--EIVTR--ERFSSLTYSGSKKLTRLPR-RS--AVVAFSTDAVYA 184
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ G+L P TR Q L+ Q E D LVA+DA+GMGLN+++ V
Sbjct: 185 IAELIRRQRGG-AAVVMGSLSPRTRNAQVALY--QSGEVDFLVATDAIGMGLNMDVDHVA 241
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEV 591
F L K++G + + +V QIAGRAGR G+T D D + + FE
Sbjct: 242 FAGLRKFDGRRTRWLYPQEVAQIAGRAGRHTRDGTFGVTGDCEEMDEDLVESVVNHRFEP 301
Query: 592 V 592
V
Sbjct: 302 V 302
>gi|421853108|ref|ZP_16285788.1| DNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|371478685|dbj|GAB30991.1| DNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 862
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 146/269 (54%), Gaps = 25/269 (9%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVY-CSLLTGQEKKLVPF 358
GPTN+GKT+ AL+R + G+ PLRLLA E ++++ L GV L+TG+EK + P
Sbjct: 28 GPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPPQ 87
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM--ADEIHLCGD---P 413
+ +CTVE + +D + +DEIQ+ +D RG+ +T LL ++ + L + P
Sbjct: 88 ARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAP 147
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFE 471
+ ++R I +T L Y G +R R + +VAFS E++
Sbjct: 148 LLKSLIRDIEIDTRPRLSNLTYT-------------GHMRLSRLPARTAIVAFSMAEVYA 194
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN++IR +
Sbjct: 195 IAELIRRKRGG-CAVVMGQLSPRTRNAQVALY--QNREVDYLVATDAIGMGLNMDIRHIA 251
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F ++ K++G + + ++ QIAGRAGR
Sbjct: 252 FANICKFDGYRNRLLTPAEAAQIAGRAGR 280
>gi|304321952|ref|YP_003855595.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
gi|303300854|gb|ADM10453.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
Length = 1017
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 23/287 (8%)
Query: 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
T PH AR + GPTN+GKT+ AL+R M G+ PLRLLA EV++K+
Sbjct: 10 TMPHR----ARTAPAGVTAVLGPTNTGKTHYALERMMAYAGGMIGLPLRLLAREVYEKLV 65
Query: 340 AL--GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
A +L+TG+EK + + + CTVE + + IDE+Q+ +D RG +T
Sbjct: 66 ARRGERAVALVTGEEKIIPRAARYFVCTVEAMPLEREVPFLAIDEVQLAADPERGRVFTD 125
Query: 398 ALLGLMADEIHLCGDPSVL----DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
LL H G L D +R + D++ +RF L + L
Sbjct: 126 RLL-------HARGQHETLFLGSDTMRPLLKRLIDDIDFVSRDRFSNLTFAGHKKVTRLP 178
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
RS +VAFS ++ + + + V+ GAL P TR QA L+N+ E D L
Sbjct: 179 R-RS--AIVAFSADSVYSIAELVRRQRGG-AAVVMGALSPRTRNAQAALYNE--GEVDYL 232
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
VA+DA+GMGLN++I V F SK++G + + ++V QIAGRAGR
Sbjct: 233 VATDAIGMGLNMDIDHVAFAGASKFDGRQSRRLLPAEVGQIAGRAGR 279
>gi|84515403|ref|ZP_01002765.1| helicase, putative [Loktanella vestfoldensis SKA53]
gi|84510686|gb|EAQ07141.1| helicase, putative [Loktanella vestfoldensis SKA53]
Length = 924
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 146/276 (52%), Gaps = 27/276 (9%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL---GVYCSLLTGQ 351
+I GPTN+GKT+ A+QR + + G+ PLRLLA EV+D++ A+ GV +L+TG+
Sbjct: 5 RITAVLGPTNTGKTHYAIQRMLSYRTGVIGLPLRLLAREVYDRIVAIKGPGV-VALVTGE 63
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIH 408
E+ + P + + CTVE + D +DEIQ+ +D RG+ +T LL GL E
Sbjct: 64 ERIVPPRAAYWVCTVEAMPDGMGCDFLAVDEIQLCADPERGHIFTDRLLHARGLH--ETL 121
Query: 409 LCGDPSVLDVVRKICSETG----DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF 464
G ++ + + D + E Y K + + + +V F
Sbjct: 122 FLGAETMRGAIAALVPGAQFMVRDRMSELTYTGSK-----------KISRMPARSAIVGF 170
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
S ++ + + + T V+ GAL P TR Q ++ Q+ + D LVA+DA+GMGLN
Sbjct: 171 SVDNVYAIAELL-RRTKGGAAVVMGALSPRTRNAQVEMY--QNGDVDYLVATDAIGMGLN 227
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
L+I V F SL+KY+G ++ + ++ QIAGRAGR
Sbjct: 228 LDISHVAFSSLTKYDGRRMRHLEPQELAQIAGRAGR 263
>gi|384261019|ref|YP_005416205.1| Helicase-like [Rhodospirillum photometricum DSM 122]
gi|378402119|emb|CCG07235.1| Helicase-like [Rhodospirillum photometricum DSM 122]
Length = 667
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 199/447 (44%), Gaps = 32/447 (7%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQE 352
+I GPTN+GKT+ A++R + G+ PLRLLA E +DK V +G +L+TG+E
Sbjct: 22 RITAVLGPTNTGKTHLAMERMLGHASGMIGFPLRLLARENYDKAVRRVGASRVALITGEE 81
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K L P + CTVE + D + IDEIQ+ D RG+ +T LL E G
Sbjct: 82 KILPPRPLYTLCTVESMPLDRRVEFLAIDEIQLCGDPDRGHVFTDRLLHARGRVETMFLG 141
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREI 469
++ ++R++ + + Y R T G LR R VVAFS ++
Sbjct: 142 AETMAPLIRRLVPGCLFDTRPR-YSRL--------TCSGHLRLQRLPRRSAVVAFSADDV 192
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + + + V+ GAL P TR Q ++ Q E D LVA+DA+GMGLN++I
Sbjct: 193 YALGEMVRRQRGG-AAVVMGALSPRTRNAQVEMY--QSGEVDYLVATDAIGMGLNMDIDH 249
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF 589
V F +L K++G + + +V QIAGRAGR + G T D + F
Sbjct: 250 VAFAALEKFDGTWMRRLAPQEVAQIAGRAGRHHNDGTFGTTADAPPLSEDVIARVEAHEF 309
Query: 590 EVVKKV---GLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVAN 646
+K++ F V LS + L + E L R I+ A+
Sbjct: 310 PALKQIFWRNSALDFRSVRALLASLSAPPPAEGLMRVREAEDQQALEALAREADIQAAAS 369
Query: 647 MLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSY------SKNAPVSIAMGMPKG 700
+++V L ++ C P + R +A H+ Y + P G +
Sbjct: 370 GVDRVALL-----WDVCRVP-DFRKLRAQTHVRLLGQIYRHLVGLAGKLPDDFVAGHVRR 423
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQ 727
+ D ++ L + + ++ ++SHQ
Sbjct: 424 VDRMDGDIHALVDRIAAIRVWTYVSHQ 450
>gi|398827720|ref|ZP_10585923.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
gi|398219018|gb|EJN05515.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
Length = 1006
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 145/286 (50%), Gaps = 22/286 (7%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--N 339
P T P A + R + GPTN+GKT+ A++R + + G+ PLRLLA EV+++V
Sbjct: 5 PKTELPLA-LTGRDVTAVLGPTNTGKTHLAIERLLAHRSGMIGLPLRLLAREVYNRVAER 63
Query: 340 ALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
A +L+TG+EK P + + CTVE + D IDE+Q+ +D RG+ +T +
Sbjct: 64 AGIANVALITGEEKISPPGARYSVCTVEAMPRQTDVDFVAIDEVQLANDLERGHIFTDRI 123
Query: 400 LGLMA-DEIHLCGDPSVLDVVRK----ICSETGDELHEQHYERFKPLVVEAKTLLGDLRN 454
L L E L G ++ ++ K I T L Y K +
Sbjct: 124 LHLRGRQETILLGAATMRGILEKLLPGISVVTRPRLSNLTYAGSKKIT-----------R 172
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+ +VAF+ E++ + I + N V+ G L P TR +Q L+ Q + D LV
Sbjct: 173 LPPRTAIVAFAAEEVYSIAELIRRQ-NGGAAVVMGTLSPRTRNKQVELY--QSGDVDYLV 229
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
A+DA+GMGLNL++ V F K++G + + +++ QIAGRAGR
Sbjct: 230 ATDAIGMGLNLDVDHVAFAQDRKFDGYQFRDLSPTEIGQIAGRAGR 275
>gi|421849307|ref|ZP_16282289.1| DNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371459945|dbj|GAB27492.1| DNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 862
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 146/269 (54%), Gaps = 25/269 (9%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVY-CSLLTGQEKKLVPF 358
GPTN+GKT+ AL+R + G+ PLRLLA E ++++ L GV L+TG+EK + P
Sbjct: 28 GPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPPQ 87
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM--ADEIHLCGD---P 413
+ +CTVE + +D + +DEIQ+ +D RG+ +T LL ++ + L + P
Sbjct: 88 ARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAP 147
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFE 471
+ ++R I +T L Y G +R R + +VAFS E++
Sbjct: 148 LLKTLIRDIEIDTRPRLSNLTYT-------------GHIRLSRLPARTAIVAFSMAEVYA 194
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN++IR +
Sbjct: 195 IAELIRRKRGG-CAVVMGQLSPRTRNAQVALY--QNREVDYLVATDAIGMGLNMDIRHIA 251
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F ++ K++G + + ++ QIAGRAGR
Sbjct: 252 FANICKFDGYRNRLLTPAEAAQIAGRAGR 280
>gi|258541200|ref|YP_003186633.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041121|ref|YP_005479865.1| DNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384049636|ref|YP_005476699.1| DNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384052746|ref|YP_005485840.1| DNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384055978|ref|YP_005488645.1| DNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384058619|ref|YP_005497747.1| DNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384061913|ref|YP_005482555.1| DNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384117989|ref|YP_005500613.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632278|dbj|BAH98253.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635335|dbj|BAI01304.1| DNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638390|dbj|BAI04352.1| DNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641444|dbj|BAI07399.1| DNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256644499|dbj|BAI10447.1| DNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256647554|dbj|BAI13495.1| DNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256650607|dbj|BAI16541.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653598|dbj|BAI19525.1| DNA helicase [Acetobacter pasteurianus IFO 3283-12]
Length = 846
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 146/269 (54%), Gaps = 25/269 (9%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVY-CSLLTGQEKKLVPF 358
GPTN+GKT+ AL+R + G+ PLRLLA E ++++ L GV L+TG+EK + P
Sbjct: 12 GPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPPQ 71
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM--ADEIHLCGD---P 413
+ +CTVE + +D + +DEIQ+ +D RG+ +T LL ++ + L + P
Sbjct: 72 ARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAP 131
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFE 471
+ ++R I +T L Y G +R R + +VAFS E++
Sbjct: 132 LLKTLIRDIEIDTRPRLSNLTYT-------------GHIRLSRLPARTAIVAFSMAEVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN++IR +
Sbjct: 179 IAELIRRKRGG-CAVVMGQLSPRTRNAQVALY--QNREVDYLVATDAIGMGLNMDIRHIA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F ++ K++G + + ++ QIAGRAGR
Sbjct: 236 FANICKFDGYRNRLLTPAEAAQIAGRAGR 264
>gi|262198861|ref|YP_003270070.1| helicase [Haliangium ochraceum DSM 14365]
gi|262082208|gb|ACY18177.1| helicase domain protein [Haliangium ochraceum DSM 14365]
Length = 793
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 140/268 (52%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LG-VYCSLLTGQEK 353
I PTN+GKT+ A++R +E + G+ PLRLLA EV+D++ LG +L+TG+EK
Sbjct: 3 ITAVLAPTNTGKTHRAVERMLEYETGMIGLPLRLLAREVYDRITGMLGESKVALVTGEEK 62
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGD 412
++ + CTVE + D +DEIQ+ + RG+ +T LL E G
Sbjct: 63 RVPAQPRYWVCTVESMPVSREVDFLAVDEIQLAAHHQRGHVFTARLLEARGRKETWFLG- 121
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
D +R I ++ Y R L + LR++ VVAFS E++E+
Sbjct: 122 ---ADTMRPILRALLPDVQVSSYPRLSQLRYAG---VSSLRSLPPRSAVVAFSVDEVYEL 175
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q L+ Q E +VA+DA+GMGLN+++ + F
Sbjct: 176 AERL-RQRRGGVAVVLGALSPRTRNAQVALY--QSGEVQYMVATDAIGMGLNMDVDHIAF 232
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ KY+G ++ + S++ QIAGRAGR
Sbjct: 233 AATRKYDGREVRYLEPSELAQIAGRAGR 260
>gi|341613821|ref|ZP_08700690.1| ATP-dependent helicase [Citromicrobium sp. JLT1363]
Length = 879
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 144/265 (54%), Gaps = 14/265 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG+E+
Sbjct: 10 LGPTNTGKTHLAIERMCGHSSGAMGFPLRLLAREVYDRVVAIKGEKAVALITGEERIEPK 69
Query: 358 FSNHIACTVEMVSTDEM-YDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
+ + CT E + D + IDE+Q+ +D RG+ +T LL +E L G +
Sbjct: 70 DARYFLCTAEAMPHDGGGHAFVAIDEVQLAADRERGHVFTDRLLNARGREETMLLGSATA 129
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+++ + EL E+ RF L L L RS VVAFS +++ +
Sbjct: 130 APLIQSLIPHV--ELTER--PRFSTLAHGGAKKLSRLPK-RS--AVVAFSSEQVYAIAEM 182
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ + V+ GAL PETR +Q LF Q+ E D +VA+DA+GMGLNL++ V F SL
Sbjct: 183 LRRQRGG-AAVVMGALSPETRNRQVELF--QNGEVDYIVATDAIGMGLNLDVTHVAFASL 239
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
+K++G K + S++ QIAGRAGR
Sbjct: 240 AKFDGVKRRRLTPSEMAQIAGRAGR 264
>gi|144898949|emb|CAM75813.1| Helicase, C-terminal [Magnetospirillum gryphiswaldense MSR-1]
Length = 820
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 178/382 (46%), Gaps = 23/382 (6%)
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLT 349
M +++ GPTN+GKT+ A+ R + G+ PLRLLA E +D+ V A GV +L+T
Sbjct: 1 MTGRVLAVLGPTNTGKTHFAIDRMLGHASGMIGFPLRLLARENYDRIVKAKGVAQVALIT 60
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIH 408
G+EK + CTVE + D +DEIQ+ +D RG+ +T LL ++E
Sbjct: 61 GEEKIIPAHPRWFVCTVESMPLDRRVAFLAVDEIQLCADPERGHIFTDRLLNARGSEETV 120
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
G ++ ++R++ G E + R L L L RS VVAFS E
Sbjct: 121 FLGAETIKPLMRRLVP--GVEYSSR--PRLSSLTYAGAKKLNRL-PPRS--AVVAFSASE 173
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ Q E D +VA+DA+GMGLN+++
Sbjct: 174 VYAMAEYVRRQRGG-AAVVLGALSPRTRNAQIGLY--QAGEVDYIVATDAIGMGLNMDVD 230
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK-- 586
V F L K++G P+ +++ QIAGRAGR + G T + D D ++E ++
Sbjct: 231 HVAFAGLRKFDGRSPRPLAATEIAQIAGRAGRHMNDGTFGTTADIAGIDAD-VVEAVENH 289
Query: 587 --QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKV 644
QP + F E L + L + E L D IK +
Sbjct: 290 KFQPLAALSWRNADLRFTSTEALLASLDRAPEAKGLIRAREADDQQALTILAADDGIKAL 349
Query: 645 ANMLEKVQGLSLEDRFNFCFAP 666
E+V+ L ++ C P
Sbjct: 350 TTHPERVKLL-----WDVCQVP 366
>gi|84687446|ref|ZP_01015324.1| helicase, putative [Maritimibacter alkaliphilus HTCC2654]
gi|84664604|gb|EAQ11090.1| helicase, putative [Rhodobacterales bacterium HTCC2654]
Length = 919
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 142/268 (52%), Gaps = 13/268 (4%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEK 353
I GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ AL +L+TG+E+
Sbjct: 4 ITAVLGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVALRGPSVVALVTGEER 63
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGD 412
+ + + CTVE + D IDEIQ+ +D RG+ +T LL E G
Sbjct: 64 IVPERTQYWVCTVEAMPEGLGADFVAIDEIQLCADPERGHVFTERLLNARGLHETLFMGS 123
Query: 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
D +R + ++ ERF L + + RS +V FS ++ +
Sbjct: 124 ----DTMRGAIAALVPKVQFMRRERFSSLTYAGSKKISRMPG-RS--AIVGFSVDNLYAL 176
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
+ + V+ GAL P TR Q ++ Q+ + D LVA+DA+GMGLNL++ V F
Sbjct: 177 AELMRRQKGG-VAVVMGALSPRTRNAQVAMY--QNGDVDYLVATDAIGMGLNLDVNHVAF 233
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+LSK++G ++ + +++ QIAGRAGR
Sbjct: 234 SALSKFDGRRMRGLAPNELAQIAGRAGR 261
>gi|395785110|ref|ZP_10464844.1| hypothetical protein ME5_00162 [Bartonella tamiae Th239]
gi|423717989|ref|ZP_17692179.1| hypothetical protein MEG_01719 [Bartonella tamiae Th307]
gi|395425622|gb|EJF91783.1| hypothetical protein ME5_00162 [Bartonella tamiae Th239]
gi|395426422|gb|EJF92549.1| hypothetical protein MEG_01719 [Bartonella tamiae Th307]
Length = 967
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 143/273 (52%), Gaps = 13/273 (4%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLL 348
V R + GPTN+GKT+ A++R + G+ PLRLLA EV+ ++ +G + SL+
Sbjct: 8 VSGRDVTAVLGPTNTGKTHLAIERMLAYDSGLIGLPLRLLAREVYQRICEKIGAHRVSLV 67
Query: 349 TGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EI 407
TG+EK + P + + CTVE + + IDE+Q+ D RG+ +T +L L E
Sbjct: 68 TGEEKIIPPNARYSVCTVEALPRETKASFVAIDEVQLSDDLERGHIFTDRILHLRGQHET 127
Query: 408 HLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
L G ++ +++K+ L RF L + + S +VAFS
Sbjct: 128 MLLGAATMQGILQKLLPG----LTIVTRPRFSHLFYTGSK---KITRLPSRSAIVAFSSE 180
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
E++ + I++ V+ GAL P TR Q L+ Q + D LVASDA+GMGLNL++
Sbjct: 181 EVYSIAEFIKRQRGG-AAVVMGALSPRTRNAQVALY--QSGDVDYLVASDAIGMGLNLDV 237
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + +++ QIAGRAGR
Sbjct: 238 DHVAFAQTRKFDGYQFRDLKPAEMGQIAGRAGR 270
>gi|357974505|ref|ZP_09138476.1| helicase domain-containing protein [Sphingomonas sp. KC8]
Length = 847
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 146/276 (52%), Gaps = 13/276 (4%)
Query: 288 FARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYC 345
+R+ ++ GPTN+GKT+ A++R G PLRLLA EV+++V A+
Sbjct: 1 MSRLTASPVVAVLGPTNTGKTHLAIERMCGHSSGAIGFPLRLLAREVYERVVAIKGPERV 60
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMA 404
+L+TG+EK L + CT E + D + +DE Q+ +D RG+ +T R L
Sbjct: 61 ALITGEEKILPEHARWFCCTAESMPIDREFAFVALDEAQLGADPERGHVFTDRLLRARGR 120
Query: 405 DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF 464
DE + G ++ ++R++ + E+ + RF L L L RS +VAF
Sbjct: 121 DETMILGSETLRPMLRQLVPDA--EIIGR--PRFSTLTYAGPAKLSRL-PPRS--VIVAF 173
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
S E++ V + + V+ GAL P TR Q +F Q E D LVA+DA+GMGLN
Sbjct: 174 SSEEVYAVAEML-RRLRGGAAVVMGALSPRTRNAQVAMF--QAGEVDYLVATDAIGMGLN 230
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+++ V F SL K++G + + S++ QIAGRAGR
Sbjct: 231 MDVAHVAFASLRKFDGKRARRLTVSEMAQIAGRAGR 266
>gi|329849614|ref|ZP_08264460.1| mgpS [Asticcacaulis biprosthecum C19]
gi|328841525|gb|EGF91095.1| mgpS [Asticcacaulis biprosthecum C19]
Length = 976
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 140/269 (52%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVYC-SLLTGQE 352
K+ GPTN+GKT+ A++R G+ PLRLLA E++D+V AL GV +L+TG+E
Sbjct: 22 KLAAVLGPTNTGKTHYAIERMCGYATGMMGLPLRLLAREIYDRVVALKGVNAVALVTGEE 81
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + ++ CTVE + + D +DEIQ+ D RG+ +T LL E G
Sbjct: 82 KIIPRLPSYFICTVEAMPLERQVDFLAVDEIQLCGDTERGHVFTDRLLHARGRFETLFLG 141
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
+ + ++ E+ + ER L L L +VAFS +++
Sbjct: 142 ANTFAPLFHRLFPAA--EIIRR--ERLSSLTYAGSKKLTRLPKR---TAIVAFSTEKVYA 194
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ G+L P+TR Q LF Q E D LVA+DA+GMGLN++I V
Sbjct: 195 IAELIRRQRGG-AAVVMGSLSPKTRNAQVELF--QKGEVDFLVATDAIGMGLNMDIAHVA 251
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F LSK++G + + ++ QIAGRAGR
Sbjct: 252 FSGLSKFDGKNVRHLTAQEIGQIAGRAGR 280
>gi|103488216|ref|YP_617777.1| helicase-like protein [Sphingopyxis alaskensis RB2256]
gi|98978293|gb|ABF54444.1| helicase-like protein [Sphingopyxis alaskensis RB2256]
Length = 920
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 146/264 (55%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+ +L+TG+E+ +
Sbjct: 13 LGPTNTGKTHLAVERLTAHASGMIGFPLRLLAREVYDRVVAIKGAADVALITGEERIMPA 72
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ ++ T+E + + IDE Q+ +D RG+ +T LL +E + G S+
Sbjct: 73 QARYLLGTMEALPVERDVAFVGIDEAQLGADPERGHVFTDRLLRARGREETMILGSASIR 132
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+VR + + E+ + RF L + L L RS +VAFS E++ + +
Sbjct: 133 GLVRDLVPDA--EIVTR--PRFSTLSYAGSSKLSRLPK-RS--AIVAFSAEEVYAIAEML 185
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ + V+ GAL P TR Q +F + E D LVA+DA+GMGLNL++R V F SL
Sbjct: 186 RRFSGG-AAVVMGALSPRTRNAQVAMF--EAGEVDYLVATDAIGMGLNLDVRHVAFASLQ 242
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G ++ + +++ QIAGRAGR
Sbjct: 243 KFDGRRLRRLTIAEMAQIAGRAGR 266
>gi|329114809|ref|ZP_08243566.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
gi|326695940|gb|EGE47624.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
Length = 862
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 146/269 (54%), Gaps = 25/269 (9%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL-GVY-CSLLTGQEKKLVPF 358
GPTN+GKT+ AL+R + G+ PLRLLA E ++++ L GV L+TG+EK + P
Sbjct: 28 GPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPPQ 87
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM--ADEIHLCGD---P 413
+ +CTVE + +D + +DEIQ+ +D RG+ +T LL ++ + L + P
Sbjct: 88 ARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAP 147
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFE 471
+ ++R I +T L Y G +R R + +VAFS E++
Sbjct: 148 LLKTLIRGIEIDTRPRLSNLTYT-------------GHMRLSRLPARTAIVAFSIAEVYA 194
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + C V+ G L P TR Q L+ Q+ E D LVA+DA+GMGLN++IR +
Sbjct: 195 IAELIRRKRGG-CAVVMGQLSPRTRNAQVALY--QNREVDYLVATDAIGMGLNMDIRHIA 251
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F ++ K++G + + ++ QIAGRAGR
Sbjct: 252 FANICKFDGYRNRLLTPAEAAQIAGRAGR 280
>gi|83313344|ref|YP_423608.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82948185|dbj|BAE53049.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 808
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 146/269 (54%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I+ GPTN+GKT+ A++R + G+ PLRLLA E +D++ + +L+TG+E
Sbjct: 3 RILAVLGPTNTGKTHFAMERMLAHASGMIGFPLRLLARENYDRMVKIKGAANVALITGEE 62
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + + + CTVE + D +DEIQ+ +D RG+ +T LL + E G
Sbjct: 63 KIIPSHARWLVCTVESMPLDRRVAFLAVDEIQLCADPERGHIFTDRLLHARGESETLFLG 122
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ ++R++ G E + RF L LG L RS +VAFS E++
Sbjct: 123 AETIRPLIRRLVP--GVEFMSR--PRFSQLTHVGAKKLGRL-PPRS--VLVAFSAAEVYA 175
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + + V+ GAL P TR Q ++ Q E D +VA+DA+GMGLN+++ V
Sbjct: 176 MAEFVRR-SRGGAAVVLGALSPRTRNAQVGMY--QAGEVDYIVATDAIGMGLNMDVDHVA 232
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +L K++G P+ +++ QIAGRAGR
Sbjct: 233 FAALRKFDGRAPRPLEPTEIAQIAGRAGR 261
>gi|260427627|ref|ZP_05781606.1| MgpS [Citreicella sp. SE45]
gi|260422119|gb|EEX15370.1| MgpS [Citreicella sp. SE45]
Length = 996
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 148/283 (52%), Gaps = 19/283 (6%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+I GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ A +L+TG+E
Sbjct: 6 RIAAVLGPTNTGKTHYAIERMLGHRTGMIGLPLRLLAREVYDKIVAARGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ + + + CTVE + D IDEIQ+ +D RG+ +T LL + E G
Sbjct: 66 RIVPARAQYWVCTVEAMPEGMGCDFVAIDEIQLCADPERGHVFTDRLLRMRGLHETLFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREI 469
D +R + ER L + LG + R + +V FS +
Sbjct: 126 S----DTMRGPIAALVKGCEFIRRERMSQL-----SYLGSKKISRMPARSAIVGFSVDNV 176
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + T V+ GAL P TR Q +L+ Q+ E D LVA+DA+GMGLNL+I
Sbjct: 177 YAIAELI-RRTKGGAAVVMGALSPRTRNAQVDLY--QNGEVDYLVATDAIGMGLNLDIDH 233
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
V F SL+K++G ++ + +++ QIAGRAGR + P TT
Sbjct: 234 VAFSSLTKFDGRRMRELQPNELAQIAGRAGR--GMKPGTFGTT 274
>gi|347529788|ref|YP_004836536.1| putative helicase [Sphingobium sp. SYK-6]
gi|345138470|dbj|BAK68079.1| putative helicase [Sphingobium sp. SYK-6]
Length = 916
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 144/270 (53%), Gaps = 19/270 (7%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+++V + +LLTG+E+ + P
Sbjct: 13 LGPTNTGKTHLAIERMCGHSSGLMGFPLRLLAREVYERVVRIKGADQVALLTGEERVIPP 72
Query: 358 FSNHIACTVEMVST----DEMYDVA--VIDEIQMMSDACRGYAWT-RALLGLMADEIHLC 410
+ ++ T E + M D A +DEIQ+ +D RG+ +T R L +E L
Sbjct: 73 AARYVLATAEAMPVRGGLGAMRDFAFVAVDEIQLAADPERGHVFTDRMLHARGREETMLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G S+ +VR + E+ + RF L L L RS +VAFS E++
Sbjct: 133 GSASMAPLVRSLLPRA--EIVSR--PRFSTLRYAGAAKLSRLPR-RS--AIVAFSVEEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
V + +H V+ GAL P TR Q +F + E D LVA+DA+GMGLNLN+ V
Sbjct: 186 RVAELLRRHRGG-AAVVMGALSPATRNAQVAMF--EAGEVDYLVATDAIGMGLNLNVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SL K++G + + +++ QIAGRAGR
Sbjct: 243 AFASLRKFDGQRTRRLTVAEMAQIAGRAGR 272
>gi|310815305|ref|YP_003963269.1| helicase [Ketogulonicigenium vulgare Y25]
gi|385232845|ref|YP_005794187.1| Helicase [Ketogulonicigenium vulgare WSH-001]
gi|308754040|gb|ADO41969.1| helicase, putative [Ketogulonicigenium vulgare Y25]
gi|343461756|gb|AEM40191.1| Helicase, putative [Ketogulonicigenium vulgare WSH-001]
Length = 951
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 150/292 (51%), Gaps = 23/292 (7%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
++ GPTN+GKT+ A+ R + + GI PLRLLA EV+D++ A +L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIDRMLSYRTGIIGLPLRLLAREVYDRIVAARGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL---GLMADEIHL 409
+ + + CTVE + D IDEIQ+ +D RG+ +T L+ GL E
Sbjct: 66 RIIPDRVQYWVCTVEAMPDGMGCDFVAIDEIQLCADPERGHIFTDRLMYARGL--HETLF 123
Query: 410 CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGD--CVVAFSRR 467
G + +R + + ERF L T G + R + +VAFS
Sbjct: 124 LGS----ETMRPAIAALVPGVQFIRRERFSTL-----TYTGPQKIARMPERAAIVAFSVD 174
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
E++ + I + T V+ GAL P TR Q LF Q + D LVA+DA+GMGLNL+I
Sbjct: 175 EVYAIAEYI-RRTRGGAAVVMGALSPRTRNAQVALF--QSGDVDYLVATDAIGMGLNLDI 231
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
V F +L K++G ++ + ++ QIAGRAGR + P T ++ ++D
Sbjct: 232 SHVAFSALRKFDGHRMRDLHADELAQIAGRAGR--HLSPGTFGVTGDVPEMD 281
>gi|407782965|ref|ZP_11130172.1| ATP-dependent helicase MgpS [Oceanibaculum indicum P24]
gi|407203875|gb|EKE73858.1| ATP-dependent helicase MgpS [Oceanibaculum indicum P24]
Length = 919
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 144/283 (50%), Gaps = 13/283 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
++ GPTN+GKTY A++R + G+ PLRLLA E +D++ + +L+TG+E
Sbjct: 14 RVTAVLGPTNTGKTYLAIERMLGHSTGMIGFPLRLLARENYDRIARIRGANQVALITGEE 73
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
K + P + + CTVE + D +DEIQ+ +D RG+ +T LL DE G
Sbjct: 74 KIVPPHARYFVCTVESMPLDRRVSFLAVDEIQLCADRERGHVFTDRLLNARGLDETMFLG 133
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ +++++ E H RF L + T + + VVAFS +++
Sbjct: 134 AETIRPLLKRLIPEA----HFVTRPRFSTL---SYTGYKKVTRLPRRSAVVAFSAADVYS 186
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P R Q ++ Q E D LVA+DA+GMGLN+++ V
Sbjct: 187 LAELVRRQRGG-TAVVLGALSPRARNAQVEMY--QAGEVDYLVATDAIGMGLNMDLDHVA 243
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574
F L K++G + ++ QIAGRAGR S G+T +
Sbjct: 244 FARLGKFDGRGPRRLTAPELAQIAGRAGRHMSDGTFGVTAEVT 286
>gi|90420291|ref|ZP_01228199.1| ATP-dependent helicase [Aurantimonas manganoxydans SI85-9A1]
gi|90335625|gb|EAS49375.1| ATP-dependent helicase [Aurantimonas manganoxydans SI85-9A1]
Length = 1089
Score = 139 bits (349), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 138/264 (52%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKLVP 357
GPTN+GKTY A++R + G PLRLLA EV+ KV + +GV +L+TG+EK P
Sbjct: 22 LGPTNTGKTYLAIERMVAHSSGTIGLPLRLLAREVYQKVCDRVGVGAVALITGEEKIKPP 81
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ + CTVE + IDE+Q+ SD RG+ +T R L +E L G ++
Sbjct: 82 NARYSVCTVEAMPRTPNTAFVAIDEVQLASDLERGHVFTDRILHARGREETLLLGSSTMQ 141
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
V++++ S + H R LV + L +VAFS E++ + I
Sbjct: 142 GVLQRLLSGS----HATTRPRLSNLVYAGSRKITRLPRR---TAIVAFSADEVYAIAELI 194
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q L+ Q + D L+A+DA+GMGLNL++ V F
Sbjct: 195 RRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDFLIATDAIGMGLNLDVDHVAFAQDW 251
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + S+ QIAGRAGR
Sbjct: 252 KFDGFQYRQLTPSEFGQIAGRAGR 275
>gi|452751628|ref|ZP_21951373.1| ATP-dependent DNA helicase [alpha proteobacterium JLT2015]
gi|451960847|gb|EMD83258.1| ATP-dependent DNA helicase [alpha proteobacterium JLT2015]
Length = 914
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 142/269 (52%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
++ GPTN+GKT+ A+ R G+ PLRLLA EV+D+V A+ +L+TG+E
Sbjct: 75 RLTAVLGPTNTGKTHLAVTRMCGHASGMMGFPLRLLAREVYDRVVAIKGAPQVALVTGEE 134
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + + + CT E + D + +DEIQ+ +D RG+ +T LL E L G
Sbjct: 135 KIVPEGARYWLCTAEAMPADLHPEFLALDEIQLAADPERGHVFTDRLLHRRGTAETMLLG 194
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ ++R++ + + + RF L L L ++AFS E++
Sbjct: 195 AATMAPLIRRLLPDA----YIEERPRFSTLSYAGPKKLSRLPRR---AALIAFSADEVYG 247
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q L+ Q E D LVA+DA+GMGLN++I V
Sbjct: 248 LAEMLRRQKGG-AAVVMGALSPRTRNAQVELY--QSGEVDYLVATDAIGMGLNMDIDHVA 304
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +LSK++G + + +++ QIAGRAGR
Sbjct: 305 FAALSKFDGQRQRRLMPAELGQIAGRAGR 333
>gi|85375454|ref|YP_459516.1| ATP-dependent helicase [Erythrobacter litoralis HTCC2594]
gi|84788537|gb|ABC64719.1| ATP-dependent helicase [Erythrobacter litoralis HTCC2594]
Length = 852
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 142/267 (53%), Gaps = 18/267 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG+E+ P
Sbjct: 10 LGPTNTGKTHLAIERMCGHSSGAIGFPLRLLAREVYDRVVAIKGESQVALITGEERIEPP 69
Query: 358 FSNHIACTVEMVSTDEM-YDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
+ + CT E + +D + +DE Q+ +D RG+ +T LL +E L G ++
Sbjct: 70 HARYFLCTAEAMPSDGGGHAFVALDEAQLSADRERGHIFTDRLLHARGREETMLLGSATL 129
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG--DLRNVRSGDCVVAFSRREIFEVK 473
V++ + E RF L T +G L + +V FS +++ V
Sbjct: 130 EPVLKSLVPRAQVETRP----RFSTL-----THIGPRKLSRLPPRSAIVGFSAEQVYTVA 180
Query: 474 MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFY 533
+ +H V+ GAL PETR +Q LF Q E D +VA+DA+GMGLNL++ V F
Sbjct: 181 EMLRRHRGG-AAVVMGALSPETRNKQVELF--QSGEVDYIVATDAIGMGLNLDVTHVAFA 237
Query: 534 SLSKYNGDKIIPVPGSQVKQIAGRAGR 560
SL K++G + + +++ QIAGRAGR
Sbjct: 238 SLVKFDGVRQRRLTPAEMAQIAGRAGR 264
>gi|312114757|ref|YP_004012353.1| helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311219886|gb|ADP71254.1| helicase domain protein [Rhodomicrobium vannielii ATCC 17100]
Length = 1147
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 156/307 (50%), Gaps = 28/307 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ A +G +L+TG+
Sbjct: 16 RHVTAVLGPTNTGKTHLAIERMLGHESGLIGLPLRLLAREVYDKIVAQIGPRDVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLC 410
EK + CTVE + D D +DEIQ+ +D RG+ +T R E L
Sbjct: 76 EKIKPERPRYYVCTVEAMPRDVEVDFLAVDEIQLAADPDRGHVFTDRLFHSRGTSETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ D +R++ G + R L + + L+ S +VAFS +++
Sbjct: 136 GAATMTDAIRELIP--GANFIAR--PRLSKLTYSGQKKITRLQ---SRSAIVAFSANDVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D +VA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QNGDVDFIVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF- 589
F K++G + +++ QIAGRAGR +L+D + + +PF
Sbjct: 246 AFAGTRKFDGRNHRDLTPAEIAQIAGRAGR-------------HLNDGTFGVTADVEPFD 292
Query: 590 -EVVKKV 595
EVV K+
Sbjct: 293 QEVVNKL 299
>gi|302384117|ref|YP_003819940.1| helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302194745|gb|ADL02317.1| helicase domain protein [Brevundimonas subvibrioides ATCC 15264]
Length = 826
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 154/309 (49%), Gaps = 24/309 (7%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVYCSLLTGQEK 353
+++ GPTN+GKT+ A++R + G+ PLRLLA E++++ V G L E+
Sbjct: 12 RVVAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYERIVRQRGANAVALITGEE 71
Query: 354 KLVPFSNHI-ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K++P H CTVE + + + IDEIQ+ +D RG+ +T LL E G
Sbjct: 72 KIIPSRPHFWVCTVEAMPLEREVEFLAIDEIQLAADPERGHVFTSRLLHARGRFETMFLG 131
Query: 412 DPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
++ ++R++ + T + L + Y K L + +VAFS
Sbjct: 132 AATMAPLMRRLIPDVEIVTRERLSQLTYAGSKKLT-----------RLPRRSAIVAFSTE 180
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
+++ + I + V+ G+L P TR Q LF Q E D LVA+DA+GMGLN+++
Sbjct: 181 QVYAIAELIRRQRGG-AAVVMGSLSPRTRNAQVALF--QSGEVDFLVATDAIGMGLNMDV 237
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR---GSIYPDGLTTTLNLDDLDYLIEC 584
V F + K++G + + ++ QIAGRAGR G+ G L+ D ++ ++E
Sbjct: 238 DHVAFAGMRKFDGRRTRWLHAHEIAQIAGRAGRHIRDGTFGVTGEAEELDEDLVEQVVEH 297
Query: 585 LKQPFEVVK 593
P + ++
Sbjct: 298 RFDPIQAIE 306
>gi|402820775|ref|ZP_10870339.1| hypothetical protein IMCC14465_15730 [alpha proteobacterium
IMCC14465]
gi|402510421|gb|EJW20686.1| hypothetical protein IMCC14465_15730 [alpha proteobacterium
IMCC14465]
Length = 908
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ L +L+TG+EK L P
Sbjct: 16 LGPTNTGKTHLAIERMLGYETGMIGFPLRLLAREVYDRIVKLKGAGQVALITGEEKILPP 75
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVL 416
+ CTVE + + D IDEIQ+ +DA RG+ +T LL + E L G +++
Sbjct: 76 DPAYYICTVEAMPISKSVDFMAIDEIQLAADAERGHIFTDRLLHARGNQETMLLGAATMV 135
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+V+++ + H R L L L + + +FS ++ + +
Sbjct: 136 PMVKQLLPKA----HIISRPRLSTLSYAGSKKLSRLPRRTA---ITSFSVDSVYAIAEVV 188
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q +++ Q E D +VA+DA+GMGLN+++ V F
Sbjct: 189 RQQKGG-AAVVMGALSPRTRNAQVDMY--QSGEVDFMVATDAIGMGLNMDVDHVAFAQTR 245
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + +++ Q+AGRAGR
Sbjct: 246 KFDGRNHRELGAAELAQVAGRAGR 269
>gi|119384565|ref|YP_915621.1| helicase [Paracoccus denitrificans PD1222]
gi|119374332|gb|ABL69925.1| helicase domain protein [Paracoccus denitrificans PD1222]
Length = 975
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 135/270 (50%), Gaps = 12/270 (4%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVYCSLLTGQ 351
+ ++ GPTN+GKT+ A+ R + + G+ PLRLLA EV+D+ V A G L
Sbjct: 4 RSRVTAVLGPTNTGKTHYAIDRMLAHRTGVIGLPLRLLAREVYDRIVKARGPSVVALVTG 63
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
E+++VP + D IDEIQ+ +D RG+ +T LL + E L
Sbjct: 64 EERIVPERVQYWVATTEAMPEVGADFVAIDEIQLCADPERGHVFTDRLLNMRGLHETLLL 123
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G D +R + ++ ERF L + + RS +V FS E++
Sbjct: 124 GS----DTMRPAIAALVPQVQFMRRERFSTLSWAGSKKISRM-PPRS--AIVCFSVEEVY 176
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
I + C V+ GAL P TR Q ++ Q E D LVA+DA+GMGLNL+IR V
Sbjct: 177 ATAELIRRQKGG-CAVVMGALSPRTRNAQVAMY--QQGEVDYLVATDAIGMGLNLDIRHV 233
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + K++G + P+ ++ QIAGRAGR
Sbjct: 234 AFSATEKFDGRRYRPLFPHELGQIAGRAGR 263
>gi|414169083|ref|ZP_11424920.1| hypothetical protein HMPREF9696_02775 [Afipia clevelandensis ATCC
49720]
gi|410885842|gb|EKS33655.1| hypothetical protein HMPREF9696_02775 [Afipia clevelandensis ATCC
49720]
Length = 1094
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 17/280 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY- 344
F AR + GPTN+GKT+ A++R + GI PLRLLA EV++K++A
Sbjct: 10 FSNARAPGAGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKISARAGAD 69
Query: 345 -CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
+L+TG+EK P + + TVE + D +DEIQ+ +D RG+ +T +L
Sbjct: 70 AVALITGEEKIKPPRARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILNRR 129
Query: 404 A-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DC 460
DE L G ++ ++ ++ ++ R L +GD + R
Sbjct: 130 GRDETLLLGAATMRPIIERLLPG----VNIVTRPRLSQL-----EFVGDRKITRQPRRTA 180
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFS E++ + I + + V+ G+L P TR Q ++F Q + D LVA+DAVG
Sbjct: 181 IVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVDMF--QSGDVDYLVATDAVG 237
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
MGLNL++ V F S KY+G + + ++ QIAGRAGR
Sbjct: 238 MGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQIAGRAGR 277
>gi|338972201|ref|ZP_08627577.1| ATP-dependent DNA helicase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234593|gb|EGP09707.1| ATP-dependent DNA helicase [Bradyrhizobiaceae bacterium SG-6C]
Length = 1108
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 17/280 (6%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY- 344
F AR + GPTN+GKT+ A++R + GI PLRLLA EV++K++A
Sbjct: 18 FSNARAPGAGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKISARAGAD 77
Query: 345 -CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
+L+TG+EK P + + TVE + D +DEIQ+ +D RG+ +T +L
Sbjct: 78 AVALITGEEKIKPPRARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILNRR 137
Query: 404 A-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DC 460
DE L G ++ ++ ++ ++ R L +GD + R
Sbjct: 138 GRDETLLLGAATMRPIIERLLPG----VNIVTRPRLSQL-----EFVGDRKITRQPRRTA 188
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFS E++ + I + + V+ G+L P TR Q ++F Q + D LVA+DAVG
Sbjct: 189 IVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVDMF--QSGDVDYLVATDAVG 245
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
MGLNL++ V F S KY+G + + ++ QIAGRAGR
Sbjct: 246 MGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQIAGRAGR 285
>gi|85704958|ref|ZP_01036058.1| helicase, putative, partial [Roseovarius sp. 217]
gi|85670280|gb|EAQ25141.1| helicase, putative, partial [Roseovarius sp. 217]
Length = 733
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 141/264 (53%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + GI PLRLLA EV+DK+ A+ +L+TG+E+ +
Sbjct: 11 LGPTNTGKTHYAIERMLGYRTGIIGLPLRLLAREVYDKIVAVRGPSVVALVTGEERIVPE 70
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + CTVE + D +DEIQ+ +D RG+ +T LL + E G ++
Sbjct: 71 RAQYWVCTVEAMPEGMGTDFVAVDEIQLCADPERGHVFTDRLLRMRGLRETQFLGSHTMR 130
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+ + G E + R L + + RS +V FS ++ + +
Sbjct: 131 QTIAALVP--GVEFLSR--ARMSQLTYTGPKKIAKM-PARS--AIVGFSVENVYAIAELL 183
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+I V F SLS
Sbjct: 184 RRQKGG-AAVVMGALSPRTRNAQVELY--QNGDVDYLVATDAIGMGLNLDINHVAFSSLS 240
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G ++ + +++ QIAGRAGR
Sbjct: 241 KFDGRRMRYLQPNELGQIAGRAGR 264
>gi|254293141|ref|YP_003059164.1| helicase [Hirschia baltica ATCC 49814]
gi|254041672|gb|ACT58467.1| helicase domain protein [Hirschia baltica ATCC 49814]
Length = 911
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 136/264 (51%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA EV+DK+ + +L+TG+E+ +
Sbjct: 12 LGPTNTGKTHLAVERMVAHESGMIGLPLRLLAREVYDKLVKIKGERLVALVTGEERIIPK 71
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ + ACTVE + IDEIQ+ D RG+ +T R L E L G
Sbjct: 72 NARYYACTVEAMPLSIPVSFLAIDEIQIARDPDRGHVFTDRILHARGQHETMLLG----A 127
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+ +R + + + +H ERF L + L +VAFS E++ + +
Sbjct: 128 ETMRPVLNALDLHVDAEHRERFSELNYTGPIKITKLPK---RTAIVAFSTEEVYSIAELL 184
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q L+ Q E D LVA+DA+GMGLNL++ + F S
Sbjct: 185 RRQRGG-SAVVMGALSPRTRNAQVELY--QSGEVDYLVATDAIGMGLNLDVSHIAFASRR 241
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + + QIAGRAGR
Sbjct: 242 KFDGHRSRFLRADEAAQIAGRAGR 265
>gi|114706529|ref|ZP_01439430.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Fulvimarina
pelagi HTCC2506]
gi|114537921|gb|EAU41044.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Fulvimarina
pelagi HTCC2506]
Length = 1124
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 18/298 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R++ GPTN+GKT+ A++R + G PLRLLA EV+ KV + +G +L+TG+
Sbjct: 17 RQVTAVLGPTNTGKTFLAIERMVAHSSGTIGLPLRLLAREVYQKVCDRVGAANVALITGE 76
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ SD RG+ +T +L +E L
Sbjct: 77 EKIKPPHARYSVCTVEAMPRNPGTAFVAIDEVQLASDLERGHVFTDRILNCRGYEETLLL 136
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ V+ ++ + R L+ + + L RS +VAFS E++
Sbjct: 137 GASTMAGVLNRLLPG----MQTATRPRLSNLMYAGQKKITRLPR-RS--AIVAFSAAEVY 189
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q E D LVA+DA+GMGLNL++ V
Sbjct: 190 AIAELIRRQRGG-AAVVLGALSPRTRNAQVELY--QTGEVDFLVATDAIGMGLNLDVDHV 246
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-LTTTLNLDDL-DYLIECLK 586
F KY+G + + ++ QIAGRAGR DG T ++D L D L++ L+
Sbjct: 247 AFAQDWKYDGFQYRQLTPAEFGQIAGRAGRH---LRDGTFGVTAHVDPLSDDLVDALQ 301
>gi|383643823|ref|ZP_09956229.1| helicase domain-containing protein [Sphingomonas elodea ATCC 31461]
Length = 825
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 144/277 (51%), Gaps = 19/277 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+EK L P
Sbjct: 14 GPTNTGKTHLAVERMCGHASGMIGFPLRLLAREVYDRVVRMKGPAEVALITGEEKILPPK 73
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVLD 417
+ CT E + + +DE Q+ +D RG+ +T R L +E L G S+
Sbjct: 74 ARWFCCTAESMPLERETAFVALDEAQLGADPERGHVFTDRLLRARGREETMLLGSDSLRP 133
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
+++ + E RF L L L RS +VAFS E++ V A+
Sbjct: 134 MLKALVPEA----EVVGRPRFSTLSYAGAKKLSRLPR-RS--AIVAFSAEEVYAVAEAL- 185
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ V+ GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F SL K
Sbjct: 186 RRLRGGAAVVMGALSPRTRNAQVAMF--QAGEVDYLVATDAIGMGLNMDVHHVAFASLHK 243
Query: 538 YNGDKIIPVPGSQVKQIAGRAGRR------GSIYPDG 568
++G + + +++ QIAGRAGR G+++ +G
Sbjct: 244 FDGRRQRRLTIAEMAQIAGRAGRHQKDGTFGALHAEG 280
>gi|307943596|ref|ZP_07658940.1| putative helicase [Roseibium sp. TrichSKD4]
gi|307773226|gb|EFO32443.1| putative helicase [Roseibium sp. TrichSKD4]
Length = 1039
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 160/313 (51%), Gaps = 18/313 (5%)
Query: 279 LTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
+++PH P AR R + GPTN+GKT+ A++R + K G+ PLRLLA EV+
Sbjct: 25 MSRPHPMQLPPAAR--SRTVTAVLGPTNTGKTHLAIERMLAQKSGLIGLPLRLLAREVYA 82
Query: 337 KV-NALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYA 394
KV + GV +L+TG+EK + + TVE + D IDE+Q+ + RG+
Sbjct: 83 KVVDRAGVDAVALITGEEKVIPKAPRYWVSTVEAMPLDLQTGFVAIDEVQLAGNLDRGHV 142
Query: 395 WTRALLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
+T +L L E L G +V ++ K+ L+ R L + L
Sbjct: 143 FTDRVLNLRGQSETLLLGSMTVRPLLEKLIPG----LNVVTRPRMSVLTYAGSKKVSRL- 197
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
RS +VAFS E++ + I + V+ G+L P TR Q LF Q+ + D L
Sbjct: 198 PARS--AIVAFSSDEVYGIAELIRRQRGG-AAVVLGSLSPRTRNAQVELF--QNGDVDHL 252
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
VA+DA+GMGLNL++ + F KY+G + + +++ QIAGRAGR G+T +
Sbjct: 253 VATDAIGMGLNLDVDHIAFAGTRKYDGYQYRQLTPAEMGQIAGRAGRHTRDGTFGVTGRV 312
Query: 574 NLDDLDYLIECLK 586
+ D D L+E ++
Sbjct: 313 DPPD-DELVERIE 324
>gi|418938946|ref|ZP_13492397.1| helicase domain-containing protein [Rhizobium sp. PDO1-076]
gi|375054430|gb|EHS50787.1| helicase domain-containing protein [Rhizobium sp. PDO1-076]
Length = 1039
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 176/368 (47%), Gaps = 18/368 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + GI PLRLLA EV+ +V +GV +L+TG+
Sbjct: 11 RSVTAVLGPTNTGKTHFAIERMVAHGSGIIGLPLRLLAREVYTRVVERVGVQNVALVTGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDEIQ+ D RG+ +T LL L DE L
Sbjct: 71 EKISPPNARFSVCTVEAMPRETKASFVAIDEIQLAGDLERGHIFTDRLLHLRGRDETLLL 130
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ G + E+ R L + + L +VAFS E++
Sbjct: 131 GSATMKQILIQLLP--GITIVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSADEVY 183
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ + D E+ LVA+DA+GMGLNL++ V
Sbjct: 184 AIAELIRRQRGG-AAVVLGALSPRTRNAQVGLYQEGDVEY--LVATDAIGMGLNLDVDHV 240
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK---- 586
F K++G + + ++ QIAGRAGR G+T ++ D D L+E L+
Sbjct: 241 AFAQDRKFDGFQFRNLNAGELGQIAGRAGRHLKDGTFGVTGRVDPFD-DELVERLEAHQF 299
Query: 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVAN 646
P +V++ + V L L + FL R+ + +AN
Sbjct: 300 DPVKVLQWRTSHFDYSSVAALQRSLDTAPKVGGLTRALPAIDQQALEFLARYPEVIDLAN 359
Query: 647 MLEKVQGL 654
E+V+ L
Sbjct: 360 RPERVEKL 367
>gi|149202305|ref|ZP_01879278.1| helicase, putative [Roseovarius sp. TM1035]
gi|149144403|gb|EDM32434.1| helicase, putative [Roseovarius sp. TM1035]
Length = 970
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 143/269 (53%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
+ + GPTN+GKT+ A++R + + GI PLRLLA EV+DK+ A+ +L+TG+E
Sbjct: 6 RTLAVLGPTNTGKTHYAIERMLGYRTGIIGLPLRLLAREVYDKIVAVRGPSVVALVTGEE 65
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCG 411
+ + + + CTVE + D +DEIQ+ +D RG+ +T LL + E G
Sbjct: 66 RIVPERAQYWVCTVEAMPEGMGADFVAVDEIQLCADPERGHVFTDRLLRMRGLRETQFLG 125
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ + + G E + R L + + RS +V FS ++
Sbjct: 126 SHTMRQTIAALVP--GVEFLSRA--RMSQLTYTGPRKIAKM-PARS--AIVGFSVENVYA 178
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ + + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+I V
Sbjct: 179 MAELLRRQKGG-AAVVMGALSPRTRNAQVELY--QNGDVDYLVATDAIGMGLNLDINHVA 235
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F SLSK++G ++ + +++ QIAGRAGR
Sbjct: 236 FSSLSKFDGRRMRYLQPNELGQIAGRAGR 264
>gi|265995639|ref|ZP_06108196.1| helicase domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|262766923|gb|EEZ12541.1| helicase domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
Length = 1028
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|427410852|ref|ZP_18901054.1| hypothetical protein HMPREF9718_03528 [Sphingobium yanoikuyae ATCC
51230]
gi|425710840|gb|EKU73860.1| hypothetical protein HMPREF9718_03528 [Sphingobium yanoikuyae ATCC
51230]
Length = 981
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 154/307 (50%), Gaps = 28/307 (9%)
Query: 288 FARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYC 345
A+ + I GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+
Sbjct: 1 MAQFARSPITAVLGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGAQQV 60
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVS----------TDEMYDVA--VIDEIQMMSDACRGY 393
+L+TG+EK + P + + CT E + T + D A +DE Q+ +D RG+
Sbjct: 61 ALITGEEKIVPPGARYFLCTAESMPISGGREAAAMTGGLSDFAFVALDEAQLGADPERGH 120
Query: 394 AWT-RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL 452
+T R L +E + G S+ V+ + E + RF L L L
Sbjct: 121 IFTDRILRARGREETMILGSASIAKTVKSLVPE----VEIIGRPRFSTLSYAGAKKLSRL 176
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
RS +VAFS E++ V + + V+ GAL P TR Q +F + D D
Sbjct: 177 PR-RS--AIVAFSAEEVYAVAEMLRRFRGG-AAVVMGALSPRTRNAQVQMFLNGD--VDY 230
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
LVA+DA+GMGLNL++ V F SL K++G + + +++ QIAGRAGR + DG +
Sbjct: 231 LVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLTVAEMAQIAGRAGRH---HKDGTFGS 287
Query: 573 LNLDDLD 579
L +D D
Sbjct: 288 LGSEDGD 294
>gi|300024666|ref|YP_003757277.1| helicase [Hyphomicrobium denitrificans ATCC 51888]
gi|299526487|gb|ADJ24956.1| helicase domain protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 1059
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 153/306 (50%), Gaps = 15/306 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+DK+ A GV +L+TG+
Sbjct: 10 RNVTAVLGPTNTGKTHLAIERMLGHNSGMIGLPLRLLAREVYDKIKARAGVENVALITGE 69
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCG 411
EK + + TVE + D D IDEIQ+ D RG+ +T LL H G
Sbjct: 70 EKIKPERARYWVSTVEAMPRDIDVDFLAIDEIQLAGDPERGHVFTDRLL-------HARG 122
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREI 469
L + + E +L +P + + T G+ + R + ++AFS +E+
Sbjct: 123 RSETLLLGAQTMREAISDLIPGANFISRPRLSKL-TYTGEKKITRLPARSAIIAFSAQEV 181
Query: 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRR 529
+ + I + V+ GAL P TR Q L+ D EF +VA+DA+GMGLNL+I
Sbjct: 182 YALAELIRRQRGG-AAVVLGALSPRTRNAQVALYQSGDVEF--IVATDAIGMGLNLDIDH 238
Query: 530 VVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF 589
V F +L K++G + ++ QIAGRAGR + G+T D D + F
Sbjct: 239 VAFSALRKFDGQNHRNLTPGEIGQIAGRAGRHMNDGTFGVTGGAEPLDADAVERLETHSF 298
Query: 590 EVVKKV 595
+ V+ +
Sbjct: 299 DSVRTL 304
>gi|225853219|ref|YP_002733452.1| ATP-dependent helicase [Brucella melitensis ATCC 23457]
gi|256263292|ref|ZP_05465824.1| ATP-dependent helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260565736|ref|ZP_05836219.1| ATP-dependent helicase [Brucella melitensis bv. 1 str. 16M]
gi|265991799|ref|ZP_06104356.1| helicase domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|384212129|ref|YP_005601212.1| ATP-dependent helicase [Brucella melitensis M5-90]
gi|384409230|ref|YP_005597851.1| ATP-dependent helicase [Brucella melitensis M28]
gi|225641584|gb|ACO01498.1| ATP-dependent helicase [Brucella melitensis ATCC 23457]
gi|260151109|gb|EEW86204.1| ATP-dependent helicase [Brucella melitensis bv. 1 str. 16M]
gi|263002755|gb|EEZ15158.1| helicase domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263093258|gb|EEZ17355.1| ATP-dependent helicase [Brucella melitensis bv. 2 str. 63/9]
gi|326409777|gb|ADZ66842.1| ATP-dependent helicase [Brucella melitensis M28]
gi|326539493|gb|ADZ87708.1| ATP-dependent helicase [Brucella melitensis M5-90]
Length = 1028
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|256370176|ref|YP_003107687.1| ATP-dependent helicase [Brucella microti CCM 4915]
gi|261750920|ref|ZP_05994629.1| helicase domain-containing protein [Brucella suis bv. 5 str. 513]
gi|256000339|gb|ACU48738.1| ATP-dependent helicase [Brucella microti CCM 4915]
gi|261740673|gb|EEY28599.1| helicase domain-containing protein [Brucella suis bv. 5 str. 513]
Length = 1028
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|384445782|ref|YP_005604501.1| ATP-dependent helicase [Brucella melitensis NI]
gi|349743771|gb|AEQ09314.1| ATP-dependent helicase [Brucella melitensis NI]
Length = 1028
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|62290640|ref|YP_222433.1| ATP-dependent helicase [Brucella abortus bv. 1 str. 9-941]
gi|82700554|ref|YP_415128.1| hypothetical protein BAB1_1781 [Brucella melitensis biovar Abortus
2308]
gi|189024852|ref|YP_001935620.1| ATP-dependent helicase [Brucella abortus S19]
gi|237816140|ref|ZP_04595135.1| helicase domain protein [Brucella abortus str. 2308 A]
gi|260547123|ref|ZP_05822861.1| ATP-dependent helicase [Brucella abortus NCTC 8038]
gi|260758686|ref|ZP_05871034.1| helicase domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260762521|ref|ZP_05874858.1| helicase domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260884482|ref|ZP_05896096.1| helicase domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297249034|ref|ZP_06932742.1| hypothetical protein BAYG_03076 [Brucella abortus bv. 5 str. B3196]
gi|376272507|ref|YP_005151085.1| Superfamily II DNA and RNA helicase [Brucella abortus A13334]
gi|423169363|ref|ZP_17156064.1| hypothetical protein M17_03051 [Brucella abortus bv. 1 str. NI435a]
gi|423172487|ref|ZP_17159160.1| hypothetical protein M19_03018 [Brucella abortus bv. 1 str. NI474]
gi|423175623|ref|ZP_17162291.1| hypothetical protein M1A_03018 [Brucella abortus bv. 1 str. NI486]
gi|423178818|ref|ZP_17165461.1| hypothetical protein M1E_03057 [Brucella abortus bv. 1 str. NI488]
gi|423181950|ref|ZP_17168589.1| hypothetical protein M1G_03048 [Brucella abortus bv. 1 str. NI010]
gi|423185048|ref|ZP_17171683.1| hypothetical protein M1I_03015 [Brucella abortus bv. 1 str. NI016]
gi|423188202|ref|ZP_17174814.1| hypothetical protein M1K_03018 [Brucella abortus bv. 1 str. NI021]
gi|423191342|ref|ZP_17177949.1| hypothetical protein M1M_03021 [Brucella abortus bv. 1 str. NI259]
gi|62196772|gb|AAX75072.1| ATP-dependent helicase [Brucella abortus bv. 1 str. 9-941]
gi|82616655|emb|CAJ11737.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Brucella
melitensis biovar Abortus 2308]
gi|189020424|gb|ACD73146.1| ATP-dependent helicase [Brucella abortus S19]
gi|237788602|gb|EEP62815.1| helicase domain protein [Brucella abortus str. 2308 A]
gi|260095488|gb|EEW79366.1| ATP-dependent helicase [Brucella abortus NCTC 8038]
gi|260669004|gb|EEX55944.1| helicase domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260672947|gb|EEX59768.1| helicase domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260874010|gb|EEX81079.1| helicase domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297174167|gb|EFH33524.1| hypothetical protein BAYG_03076 [Brucella abortus bv. 5 str. B3196]
gi|363400113|gb|AEW17083.1| Superfamily II DNA and RNA helicase [Brucella abortus A13334]
gi|374535057|gb|EHR06584.1| hypothetical protein M1A_03018 [Brucella abortus bv. 1 str. NI486]
gi|374535250|gb|EHR06776.1| hypothetical protein M19_03018 [Brucella abortus bv. 1 str. NI474]
gi|374535549|gb|EHR07071.1| hypothetical protein M17_03051 [Brucella abortus bv. 1 str. NI435a]
gi|374544581|gb|EHR16051.1| hypothetical protein M1E_03057 [Brucella abortus bv. 1 str. NI488]
gi|374544872|gb|EHR16337.1| hypothetical protein M1G_03048 [Brucella abortus bv. 1 str. NI010]
gi|374545025|gb|EHR16489.1| hypothetical protein M1I_03015 [Brucella abortus bv. 1 str. NI016]
gi|374552853|gb|EHR24275.1| hypothetical protein M1K_03018 [Brucella abortus bv. 1 str. NI021]
gi|374553047|gb|EHR24468.1| hypothetical protein M1M_03021 [Brucella abortus bv. 1 str. NI259]
Length = 1028
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|306844754|ref|ZP_07477339.1| ATP-dependent helicase [Brucella inopinata BO1]
gi|306274926|gb|EFM56696.1| ATP-dependent helicase [Brucella inopinata BO1]
Length = 1023
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|261754174|ref|ZP_05997883.1| helicase domain-containing protein [Brucella suis bv. 3 str. 686]
gi|261743927|gb|EEY31853.1| helicase domain-containing protein [Brucella suis bv. 3 str. 686]
Length = 980
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|163845347|ref|YP_001623002.1| hypothetical protein BSUIS_B1246 [Brucella suis ATCC 23445]
gi|163676070|gb|ABY40180.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 1028
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|294851013|ref|ZP_06791689.1| ATP-dependent helicase [Brucella sp. NVSL 07-0026]
gi|294821656|gb|EFG38652.1| ATP-dependent helicase [Brucella sp. NVSL 07-0026]
Length = 1028
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|295691057|ref|YP_003594750.1| helicase domain-containing protein [Caulobacter segnis ATCC 21756]
gi|295432960|gb|ADG12132.1| helicase domain protein [Caulobacter segnis ATCC 21756]
Length = 852
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 140/269 (52%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
K+ GPTN+GKT+ A++R + G+ PLRLLA E++D+V L +L+TG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRVVKLRGKASVALITGEE 71
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + + + CTVE + + +DEIQ+ +D RG+ +T LL E G
Sbjct: 72 KIVPARAAYFVCTVEAMPLAREVEFLAVDEIQLCADPERGHIFTHRLLHARGKFETMFLG 131
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ +VR++ + E+ + ERF L L L +VAFS ++
Sbjct: 132 AGTMAPLVRRLLPDA--EIVSR--ERFSNLSYAGSKKLTRLPRR---TAIVAFSTDAVYA 184
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ G+L P TR Q L+ Q E D LVA+DA+GMGLN+++ V
Sbjct: 185 IAELIRRQRGG-AAVVMGSLSPRTRNAQVALY--QSGEVDFLVATDAIGMGLNMDVDHVA 241
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F L K++G + + +V QIAGRAGR
Sbjct: 242 FAGLRKFDGKRTRWLYPQEVGQIAGRAGR 270
>gi|261214735|ref|ZP_05929016.1| helicase domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
gi|260916342|gb|EEX83203.1| helicase domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
Length = 1028
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|17986559|ref|NP_539193.1| ATP-dependent DNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|17982167|gb|AAL51457.1| ATP-dependent DNA helicase [Brucella melitensis bv. 1 str. 16M]
Length = 1028
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|260755464|ref|ZP_05867812.1| helicase domain-containing protein [Brucella abortus bv. 6 str.
870]
gi|260675572|gb|EEX62393.1| helicase domain-containing protein [Brucella abortus bv. 6 str.
870]
Length = 1049
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 37 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 96
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 97 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 156
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 157 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 209
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 210 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 266
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 267 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 296
>gi|261316269|ref|ZP_05955466.1| helicase domain-containing protein [Brucella pinnipedialis B2/94]
gi|265987333|ref|ZP_06099890.1| helicase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340791366|ref|YP_004756831.1| ATP-dependent helicase [Brucella pinnipedialis B2/94]
gi|261295492|gb|EEX98988.1| helicase domain-containing protein [Brucella pinnipedialis B2/94]
gi|264659530|gb|EEZ29791.1| helicase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340559825|gb|AEK55063.1| ATP-dependent helicase [Brucella pinnipedialis B2/94]
Length = 1028
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|261222888|ref|ZP_05937169.1| helicase domain-containing protein [Brucella ceti B1/94]
gi|265998847|ref|ZP_06111404.1| helicase domain-containing protein [Brucella ceti M490/95/1]
gi|260921472|gb|EEX88125.1| helicase domain-containing protein [Brucella ceti B1/94]
gi|262553536|gb|EEZ09305.1| helicase domain-containing protein [Brucella ceti M490/95/1]
Length = 1028
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|260568846|ref|ZP_05839314.1| ATP-dependent helicase [Brucella suis bv. 4 str. 40]
gi|376275632|ref|YP_005116071.1| ATP-dependent helicase [Brucella canis HSK A52141]
gi|260154230|gb|EEW89312.1| ATP-dependent helicase [Brucella suis bv. 4 str. 40]
gi|363404199|gb|AEW14494.1| ATP-dependent helicase [Brucella canis HSK A52141]
Length = 1028
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|225628330|ref|ZP_03786364.1| helicase domain protein [Brucella ceti str. Cudo]
gi|261315870|ref|ZP_05955067.1| helicase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261757418|ref|ZP_06001127.1| ATP-dependent helicase [Brucella sp. F5/99]
gi|225616176|gb|EEH13224.1| helicase domain protein [Brucella ceti str. Cudo]
gi|261304896|gb|EEY08393.1| helicase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261737402|gb|EEY25398.1| ATP-dependent helicase [Brucella sp. F5/99]
Length = 1028
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|221233631|ref|YP_002516067.1| ATP-dependent DNA helicase [Caulobacter crescentus NA1000]
gi|220962803|gb|ACL94159.1| ATP-dependent DNA helicase [Caulobacter crescentus NA1000]
Length = 855
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 140/269 (52%), Gaps = 13/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
K+ GPTN+GKT+ A++R + G+ PLRLLA E++D++ L +L+TG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRIVKLRGKAAVALITGEE 71
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCG 411
K + + + CTVE + + +DEIQ+ +D RG+ +T LL E G
Sbjct: 72 KIVPARAAYFVCTVEAMPLGREVEFLAVDEIQLCADPERGHIFTHRLLHARGKFETMFLG 131
Query: 412 DPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFE 471
++ +VR++ + E+ + ERF L L L +VAFS ++
Sbjct: 132 AGTMAPLVRRLLPDA--EIVSR--ERFSNLSYAGSKKLTRLPRR---TAIVAFSTDAVYA 184
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+ I + V+ G+L P TR Q L+ Q E D LVA+DA+GMGLN+++ V
Sbjct: 185 IAELIRRQRGG-AAVVMGSLSPRTRNAQVALY--QSGEVDFLVATDAIGMGLNMDVDHVA 241
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F L K++G + + +V QIAGRAGR
Sbjct: 242 FAGLRKFDGKRTRWLYPQEVGQIAGRAGR 270
>gi|332186925|ref|ZP_08388666.1| helicase conserved C-terminal domain protein [Sphingomonas sp. S17]
gi|332012935|gb|EGI54999.1| helicase conserved C-terminal domain protein [Sphingomonas sp. S17]
Length = 831
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 143/264 (54%), Gaps = 14/264 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R GI PLRLLA EV+D+V AL +L+TG+EK + P
Sbjct: 13 LGPTNTGKTHLAIERMCAHSSGIIGFPLRLLAREVYDRVVALKGADTVALVTGEEKIVPP 72
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ CT E + ++ VA +DE Q+ +D RG+ +T LL DE + G ++
Sbjct: 73 DARWFLCTAESMPDRDVAFVA-LDEAQLGADLERGHVFTDRLLHARGRDETMILGSEALK 131
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++R + + E+ + RF L + L RS +VAFS E++ V +
Sbjct: 132 PMIRALVPDA--EIVAR--PRFSTLTYAGAKKISRLPK-RS--AIVAFSAEEVYAVAEML 184
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F L
Sbjct: 185 -RRLRGGAAVVMGALSPRTRNAQVEMF--QAGEVDYLVATDAIGMGLNMDVAHVAFAGLH 241
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + +++ QIAGRAGR
Sbjct: 242 KFDGRRRRRLTVAEMAQIAGRAGR 265
>gi|306841484|ref|ZP_07474184.1| ATP-dependent helicase [Brucella sp. BO2]
gi|306288448|gb|EFM59804.1| ATP-dependent helicase [Brucella sp. BO2]
Length = 1028
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|265984782|ref|ZP_06097517.1| helicase domain-containing protein [Brucella sp. 83/13]
gi|306839458|ref|ZP_07472266.1| ATP-dependent helicase [Brucella sp. NF 2653]
gi|264663374|gb|EEZ33635.1| helicase domain-containing protein [Brucella sp. 83/13]
gi|306405403|gb|EFM61674.1| ATP-dependent helicase [Brucella sp. NF 2653]
Length = 1028
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLF 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|261219352|ref|ZP_05933633.1| helicase domain-containing protein [Brucella ceti M13/05/1]
gi|261322413|ref|ZP_05961610.1| helicase domain-containing protein [Brucella ceti M644/93/1]
gi|260924441|gb|EEX91009.1| helicase domain-containing protein [Brucella ceti M13/05/1]
gi|261295103|gb|EEX98599.1| helicase domain-containing protein [Brucella ceti M644/93/1]
Length = 887
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|381201266|ref|ZP_09908395.1| putative helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 981
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 154/307 (50%), Gaps = 28/307 (9%)
Query: 288 FARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYC 345
A+ + + GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+
Sbjct: 1 MAQFARSPVTAVLGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGAQQV 60
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVS----------TDEMYDVA--VIDEIQMMSDACRGY 393
+L+TG+EK + P + + CT E + T + D A +DE Q+ +D RG+
Sbjct: 61 ALITGEEKIVPPGARYFLCTAESMPISGGREAAAMTGGLSDFAFVALDEAQLGADPERGH 120
Query: 394 AWT-RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDL 452
+T R L +E + G S+ V+ + E + RF L L L
Sbjct: 121 IFTDRILRARGREETMILGSASIAKTVKSLVPE----VEIIGRPRFSTLSYAGAKKLSRL 176
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
RS +VAFS E++ V + + V+ GAL P TR Q +F + D D
Sbjct: 177 PR-RS--AIVAFSAEEVYAVAEMLRRFRGG-AAVVMGALSPRTRNAQVQMFLNGD--VDY 230
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572
LVA+DA+GMGLNL++ V F SL K++G + + +++ QIAGRAGR + DG +
Sbjct: 231 LVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLTVAEMAQIAGRAGRH---HKDGTFGS 287
Query: 573 LNLDDLD 579
L +D D
Sbjct: 288 LGSEDGD 294
>gi|399065179|ref|ZP_10747801.1| superfamily II RNA helicase [Novosphingobium sp. AP12]
gi|398029998|gb|EJL23439.1| superfamily II RNA helicase [Novosphingobium sp. AP12]
Length = 850
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 138/265 (52%), Gaps = 14/265 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+E+ P
Sbjct: 21 LGPTNTGKTHLAIERMCAHSSGMIGFPLRLLAREVYDRVVKIKGEKSVALITGEERIEPP 80
Query: 358 FSNHIACTVE-MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
+ ++ CT E M T+ IDE Q+ +D RG+ +T LL +E + G
Sbjct: 81 NARYLLCTAEAMPVTERSMAFVAIDEAQLAADRERGHVFTDRLLHARGREETMILGSSIA 140
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+VR + G E+ + RF L L V +VAFS +++ +
Sbjct: 141 EPLVRALVP--GVEIVTR--PRFSTLTHSGAK---KLSRVPPRSAIVAFSSEQVYAIAEM 193
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ + V+ GAL P+TR Q L+ Q E D LVA+DA+GMGLNL++ V F L
Sbjct: 194 LRRFRGG-AAVVMGALSPQTRNAQVALY--QSGEVDYLVATDAIGMGLNLDVEHVAFAGL 250
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SKY+G + + ++ QIAGRAGR
Sbjct: 251 SKYDGRRHRRLTPPEMAQIAGRAGR 275
>gi|319781061|ref|YP_004140537.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166949|gb|ADV10487.1| helicase domain protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 1121
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 21/307 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + + GI PLRLLA EV+ +V +G + +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHESGIIGLPLRLLAREVYARVCEKVGAHKVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKIQPPGAKYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVV----RKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G ++ ++ R + T L Y K L + +VAFS
Sbjct: 136 GAATMQSILQRLLRGVSVVTRPRLSHLAYAGSKKLT-----------RLPRRTAIVAFSA 184
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ + I + V+ GAL P TR Q LF Q + D L+A+DA+GMGLNL+
Sbjct: 185 DEVYAIAELIRRQQGG-AAVVLGALSPRTRNAQVALF--QSGDVDYLIATDAIGMGLNLD 241
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586
+ V F K++G + + +++ QIAGRAGR G+T ++ D D + +
Sbjct: 242 LDHVAFAQNRKFDGFQYRNLTAAELGQIAGRAGRHLRDGTFGVTGQVDPLDEDLIKKIEG 301
Query: 587 QPFEVVK 593
F+ VK
Sbjct: 302 HDFDPVK 308
>gi|340027356|ref|ZP_08663419.1| helicase domain-containing protein [Paracoccus sp. TRP]
Length = 969
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 136/270 (50%), Gaps = 12/270 (4%)
Query: 293 KRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVYCSLLTGQ 351
K ++ GPTN+GKT+ A++R + + G+ PLRLLA EV+D+ V A G L
Sbjct: 4 KSRVTAVLGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVKARGPSVVALVTG 63
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
E+++VP + D IDEIQ+ +D RG+ +T LL + E L
Sbjct: 64 EERIVPERVQYWVATTEAMPEVGADFVAIDEIQLCADPERGHVFTDRLLHMRGLHETLLL 123
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ + + +T ERF L + + RS +V FS E++
Sbjct: 124 GSDTMRPAIAALVPQT----QFMRRERFSTLSWAGSKKISRM-PPRS--AIVCFSVDEVY 176
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
I + C V+ GAL P TR Q ++ Q+ E D LVA+DA+GMGLNL+IR +
Sbjct: 177 ATAELIRRQKGG-CAVVMGALSPRTRNAQVAMY--QNGEVDYLVATDAIGMGLNLDIRHI 233
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + K++G + + ++ QIAGRAGR
Sbjct: 234 AFSATEKFDGRRFRQLFPHELGQIAGRAGR 263
>gi|220921713|ref|YP_002497014.1| helicase domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219946319|gb|ACL56711.1| helicase domain protein [Methylobacterium nodulans ORS 2060]
Length = 1135
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 144/277 (51%), Gaps = 15/277 (5%)
Query: 287 PFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-Y 344
P AR R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V + +G
Sbjct: 17 PQARA--RGVTAVLGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYHRVVDRVGSER 74
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
+L+TG+EK ++ CT E + D D +DE+Q+ +D RG+ +T LL
Sbjct: 75 VALVTGEEKIKPDRPSYWICTAEAMPRDRSVDFVAVDEVQLGADMDRGHTFTDRLLHQRG 134
Query: 405 -DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
+E L G ++ +V+ + +H R L + + L + VVA
Sbjct: 135 REETLLIGSATIAPLVQALIPG----VHITTRPRLSRLSFAGEKRISRLPHR---TAVVA 187
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FS E++ + + + V+ GAL P TR Q L+ Q + D LVA+DAVGMGL
Sbjct: 188 FSAEEVYAIAELLRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAVGMGL 244
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
NL++ V F S K++G + + +++ QIAGRAGR
Sbjct: 245 NLDVDHVAFASNRKFDGTRFRGLTPAEMAQIAGRAGR 281
>gi|407975288|ref|ZP_11156194.1| helicase-like protein [Nitratireductor indicus C115]
gi|407429373|gb|EKF42051.1| helicase-like protein [Nitratireductor indicus C115]
Length = 1002
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 176/364 (48%), Gaps = 16/364 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LG-VYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +G +L+TG+
Sbjct: 16 RDVTAILGPTNTGKTHLAIERMVAHHTGVIGLPLRLLAREVYARVAAKVGEANVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKITPPGARYSVCTVEAMPRETDAAFVAIDEVQLAADLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ L R L + L RS +VAFS E++
Sbjct: 136 GAGTMRGILEKLLPG----LSVITRPRMSVLTYAGSRKITRLPR-RS--AIVAFSSDEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIGELIRRQRGG-VAVVLGALSPRTRNAQVALY--QSGDVDYLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN--LDDLDYLIECLK-Q 587
F K++G + + +++ QIAGRAGR G+T ++ DDL IE + +
Sbjct: 246 AFAQNRKFDGFQYRDLNAAELGQIAGRAGRHLRDGTFGVTGQVDPFPDDLVQRIEAHQFE 305
Query: 588 PFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANM 647
P +V++ F V+ L + L + +L R D + K+A+
Sbjct: 306 PAKVLQWRTANFDFASVDALKASLDTPPPVEGLTRALPAADARVLDYLSREDEVLKLAHG 365
Query: 648 LEKV 651
E+V
Sbjct: 366 RERV 369
>gi|444309813|ref|ZP_21145444.1| helicase domain-containing protein [Ochrobactrum intermedium M86]
gi|443486895|gb|ELT49666.1| helicase domain-containing protein [Ochrobactrum intermedium M86]
Length = 1028
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 29/331 (8%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVVERVGAANVALVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRRTDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAGTMRGILEKLLRG----INVVTRPRLSHLAYAGSKKITRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF- 589
F K++G + + ++V QIAGRAGR +L D + + PF
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR-------------HLRDGTFGVTGQVHPFD 292
Query: 590 -EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
E+V++V F+ V++ + + + F L
Sbjct: 293 EELVERVEAH-NFDPVKVLQWRTARFDFSSL 322
>gi|261325802|ref|ZP_05964999.1| helicase domain-containing protein [Brucella neotomae 5K33]
gi|261301782|gb|EEY05279.1| helicase domain-containing protein [Brucella neotomae 5K33]
Length = 1006
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ ++R + G+ PLRLLA EV+++V SL+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLTIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAATMRGILEKLLRG----VNVVTRPRLSHLAYAGSKKMTRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|404320554|ref|ZP_10968487.1| helicase domain-containing protein [Ochrobactrum anthropi CTS-325]
Length = 1029
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 139/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVVERVGAANVALVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRRTDVAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAGTMRGILEKLLRG----INVVTRPRLSHLAYAGSKKITRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++V QIAGRAGR
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR 275
>gi|239832852|ref|ZP_04681181.1| helicase domain protein [Ochrobactrum intermedium LMG 3301]
gi|239825119|gb|EEQ96687.1| helicase domain protein [Ochrobactrum intermedium LMG 3301]
Length = 1040
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 29/331 (8%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V +L+TG+
Sbjct: 28 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVVERVGAANVALVTGE 87
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ D RG+ +T +L L E L
Sbjct: 88 EKIVPPGARYSVCTVEAMPRRTDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 147
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 148 GAGTMRGILEKLLRG----INVVTRPRLSHLAYAGSKKITRLPN-RS--AIVAFSADEVY 200
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 201 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 257
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF- 589
F K++G + + ++V QIAGRAGR +L D + + PF
Sbjct: 258 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR-------------HLRDGTFGVTGQVHPFD 304
Query: 590 -EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
E+V++V F+ V++ + + + F L
Sbjct: 305 EELVERVEAH-NFDPVKVLQWRTARFDFSSL 334
>gi|148556442|ref|YP_001264024.1| helicase domain-containing protein [Sphingomonas wittichii RW1]
gi|148501632|gb|ABQ69886.1| helicase domain protein [Sphingomonas wittichii RW1]
Length = 865
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 28/296 (9%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEK 353
++ GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+ +L+TG+EK
Sbjct: 9 VVAVLGPTNTGKTHLAIERMCGHSSGMIGFPLRLLAREVYDRVVAIKGKERVALITGEEK 68
Query: 354 KLVPFSNHIACTVEMVST------------DEMYDVAVIDEIQMMSDACRGYAWT-RALL 400
+ P + + T E + D Y +DE Q+ +D RG+ +T R L
Sbjct: 69 LIPPNAQYFLTTAESMPISPGLLAGGDKQGDRDYAFVALDEAQLGADPERGHVFTDRLLR 128
Query: 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
+E + G ++ ++R + + E+ + RF L T L L RS
Sbjct: 129 ARGREETMILGSEALRPMIRALVPDA--EIIGR--PRFSTLTYAGATKLSRL-PPRS--A 181
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFS E++ V + + V+ GAL P TR Q +F Q E D LVA+DA+G
Sbjct: 182 IVAFSAEEVYAVAEML-RRLRGGAAVVMGALSPRTRNAQVGMF--QAGEVDYLVATDAIG 238
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576
MGLN+++ V F SL K++G + + +++ QIAGRAGR DG TL L+
Sbjct: 239 MGLNMDVAHVAFASLRKFDGRRARRLTIAEMAQIAGRAGRHQR---DGTFGTLALE 291
>gi|153008465|ref|YP_001369680.1| helicase domain-containing protein [Ochrobactrum anthropi ATCC
49188]
gi|151560353|gb|ABS13851.1| helicase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 1027
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 29/331 (8%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVVERVGAANVALVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + P + + CTVE + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKIVPPGARYSVCTVEAMPRRTDVAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L N RS +VAFS E++
Sbjct: 136 GAGTMRGILEKLLRG----INVVTRPRLSHLAYAGAKKITRLPN-RS--AIVAFSADEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIAELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPF- 589
F K++G + + ++V QIAGRAGR +L D + + PF
Sbjct: 246 AFAQNRKFDGYQFRDLTPAEVGQIAGRAGR-------------HLRDGTFGVTGQVHPFD 292
Query: 590 -EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
E+V++V F+ V++ + + + F L
Sbjct: 293 EELVERVEAH-NFDPVKVLQWRTARFDFSSL 322
>gi|148559358|ref|YP_001259613.1| photosynthesis protein modulator [Brucella ovis ATCC 25840]
gi|148370615|gb|ABQ60594.1| photosynthesis protein modulator [Brucella ovis ATCC 25840]
Length = 1003
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 136/268 (50%), Gaps = 21/268 (7%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV+++V SL+TG+EK + P
Sbjct: 2 LGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVSLVTGEEKIVPP 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + CTVE + IDE+Q+ +D RG+ +T +L L E L G ++
Sbjct: 62 GARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAATMR 121
Query: 417 DVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
++ K+ T L Y K + + + +VAFS E++ +
Sbjct: 122 GILEKLLRGVNVVTRPRLSHLAYAGLKKIT-----------RLPNRSAIVAFSADEVYAI 170
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V F
Sbjct: 171 AELIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDFLVATDAIGMGLNLDVDHVAF 227
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + ++V QIAGRAGR
Sbjct: 228 AQNRKFDGYQFRDLTPAEVGQIAGRAGR 255
>gi|393765522|ref|ZP_10354084.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
gi|392729104|gb|EIZ86407.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
Length = 1103
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 139/264 (52%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +G +L+TG+EK
Sbjct: 5 LGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYLRVVAKVGPEKVALVTGEEKIKPD 64
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ CT+E + D IDEIQ+ +D RG+ +T LL + +E L G ++L
Sbjct: 65 RPRYWICTIEAMPRDLDVAYVAIDEIQLAADMDRGHVFTDRLLYVRGREETLLIGSSTML 124
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+V+ + +H R L + L L +VAFS E++ + I
Sbjct: 125 PLVQGLIPN----VHTTTRPRLSKLSFAGEKRLSRLPRR---TAIVAFSAEEVYAIAELI 177
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q ++ Q + D LVA+DAVGMGLNL++ V F +
Sbjct: 178 RRQRGG-AAVVLGALSPRTRNAQVEMY--QAGDVDYLVATDAVGMGLNLDVDHVAFAANW 234
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + +++ QIAGRAGR
Sbjct: 235 KYDGTRFRKLTPAEMGQIAGRAGR 258
>gi|94497176|ref|ZP_01303748.1| ATP-dependent helicase [Sphingomonas sp. SKA58]
gi|94423281|gb|EAT08310.1| ATP-dependent helicase [Sphingomonas sp. SKA58]
Length = 901
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 150/291 (51%), Gaps = 24/291 (8%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+ +L+TG+EK + P
Sbjct: 20 LGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGEKLVALVTGEEKIVPP 79
Query: 358 FSNHIACTVEMV--------STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
+ + CT E + E + +DE Q+ +D RG+ +T LL +E
Sbjct: 80 NARYFLCTAESMPISGSREAGAKEDFAFVALDEAQLGADPERGHIFTDRLLRARGREETM 139
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
+ G S+ +V+ + + D + RF L L L RS +VAFS E
Sbjct: 140 ILGSASISRIVKALIPDV-DIISR---PRFSTLSYAGAKKLSRLPR-RS--AIVAFSAEE 192
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ V + + V+ GAL P TR Q +F + D D LVA+DA+GMGLNL++
Sbjct: 193 VYAVAEMLRRFRGG-AAVVMGALSPRTRNAQVQMFLNGD--VDYLVATDAIGMGLNLDVA 249
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
V F SL K++G + + S++ QIAGRAGR + DG +L +D D
Sbjct: 250 HVAFASLRKFDGRRSRRLTVSEMAQIAGRAGRH---HMDGTFGSLGHEDGD 297
>gi|420246044|ref|ZP_14749553.1| DNA/RNA helicase, superfamily II, partial [Rhizobium sp. CF080]
gi|398044032|gb|EJL36882.1| DNA/RNA helicase, superfamily II, partial [Rhizobium sp. CF080]
Length = 594
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 143/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +GV +L+TG+
Sbjct: 35 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRLVEKVGVSQVALVTGE 94
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ D RG+ +T +L L DE L
Sbjct: 95 EKITPPNARFSVCTVEAMPRETKASFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 154
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ G + E+ R L + + L RS +VAFS E++
Sbjct: 155 GAATMRPILERLLP--GITVVER--PRLSQLFYAGQKKITRLPQ-RS--AIVAFSADEVY 207
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 208 AIAELIRRQRGG-AAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDHV 264
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ QIAGRAGR
Sbjct: 265 AFAQDRKFDGYQFRSLNPAELAQIAGRAGR 294
>gi|163792657|ref|ZP_02186634.1| Helicase-like protein [alpha proteobacterium BAL199]
gi|159182362|gb|EDP66871.1| Helicase-like protein [alpha proteobacterium BAL199]
Length = 936
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 136/264 (51%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + + G+ PLRLLA E +D+V A +L+TG+EK +
Sbjct: 14 LGPTNTGKTHLAIERMLGHESGMIGFPLRLLARENYDRVVAAKGARAVALITGEEKIVPA 73
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ + CTVE + D IDEIQ+ D RG+ +T R + A+E G
Sbjct: 74 EARYFVCTVESMPLDREVAFLAIDEIQLAGDPERGHVFTDRLMHARGAEETMFLG----A 129
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
D +R + E + R L + L RS +VAFS +++ + +
Sbjct: 130 DTIRPLLQRLVPEARVETRPRLSKLTYAGPCKITRLPR-RS--AIVAFSAADVYALAEIV 186
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q LF Q+ E D L+A+DA+GMGLN+++ V F +
Sbjct: 187 RRQRGG-AAVVMGALSPRTRNAQVKLF--QEGEVDYLIATDAIGMGLNMDVDHVAFAEDA 243
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + +++ QIAGRAGR
Sbjct: 244 KFDGRMPRKLTPAELAQIAGRAGR 267
>gi|170742911|ref|YP_001771566.1| helicase domain-containing protein [Methylobacterium sp. 4-46]
gi|168197185|gb|ACA19132.1| helicase domain protein [Methylobacterium sp. 4-46]
Length = 1154
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 182/389 (46%), Gaps = 28/389 (7%)
Query: 287 PFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-Y 344
P AR R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G
Sbjct: 8 PQARA--RGVTAVLGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYHRVVERVGPER 65
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
+L+TG+EK ++ CT E + D D +DEIQ+ +D RG+ +T LL
Sbjct: 66 VALVTGEEKIKPDRPSYWICTAEAMPRDRGVDFVAVDEIQLGADMDRGHTFTDRLLHQRG 125
Query: 405 -DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
+E L G ++ +V+ + +H R L + L L + +VA
Sbjct: 126 REETLLIGSGTMGPLVQALIPG----VHVTTRPRLSQLGFAGEKRLSRLPHR---TAIVA 178
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FS E++ + + + V+ GAL P TR Q L+ Q + D LVA+DA+GMGL
Sbjct: 179 FSAEEVYAIAELLRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAIGMGL 235
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR---GSIYPDGLTTTLNLDDLDY 580
NL++ V F S K++G + + +++ QIAGRAGR G+ G + ++
Sbjct: 236 NLDVDHVAFASNRKFDGTRFRGLSPAEMAQIAGRAGRHLRDGTFGSTGRCPPFEPEMVEA 295
Query: 581 LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLL---EKFGENCRLDGSYFLCR 637
L +P V++ F V L+ + + L + + LD L R
Sbjct: 296 LESHSFEPTRVLQWRNPDLDFTSVATLQASLAEHPAERGLVRAPRGDDEAALD---LLAR 352
Query: 638 HDHIKKVANMLEKVQGLSLEDRFNFCFAP 666
D I+ VA+ +G ++E + C P
Sbjct: 353 EDDIRDVASG----RGGAVERLWAVCGVP 377
>gi|188584090|ref|YP_001927535.1| helicase domain-containing protein [Methylobacterium populi BJ001]
gi|179347588|gb|ACB83000.1| helicase domain protein [Methylobacterium populi BJ001]
Length = 1138
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 142/273 (52%), Gaps = 13/273 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +GV +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGVENVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CT+E + D IDEIQ+ +D RG+ +T LL +E L
Sbjct: 73 EKIKPDRPRYWICTIEAMPRDLEVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLI 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++L +V+ + + R L + + L + +VAFS E++
Sbjct: 133 GSATMLPLVQALIPG----VQTTTRPRLSSLSFAGEKKISRLPHR---TAIVAFSAEEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DAVGMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAVGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563
F + KY+G + + +++ QIAGRAGR S
Sbjct: 243 AFAANWKYDGTRFRKLTPAEMGQIAGRAGRHTS 275
>gi|414165035|ref|ZP_11421282.1| hypothetical protein HMPREF9697_03183 [Afipia felis ATCC 53690]
gi|410882815|gb|EKS30655.1| hypothetical protein HMPREF9697_03183 [Afipia felis ATCC 53690]
Length = 1068
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 139/266 (52%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV++K+ A +L+TG+EK P
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIVARAGAESVALITGEEKIKPP 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + TVE + D +DEIQ+ SD RG+ +T +L DE L G ++
Sbjct: 62 KARYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILHRRGRDETLLLGAATMR 121
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ R + ++E GD + R +VAFS E++ +
Sbjct: 122 PLIERLLPGA------NIVTRPRLSLLE---FAGDRKITRQPRRTAIVAFSADEVYAIAE 172
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q + D LVA+DAVGMGLNL++ V F S
Sbjct: 173 LIRRQ-HGGAAVVLGSLSPRTRNAQVEMF--QSGDVDYLVATDAVGMGLNLDVDHVAFAS 229
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + ++ QIAGRAGR
Sbjct: 230 DRKYDGYQFRRLTPAEFAQIAGRAGR 255
>gi|294012718|ref|YP_003546178.1| putative helicase [Sphingobium japonicum UT26S]
gi|292676048|dbj|BAI97566.1| putative helicase [Sphingobium japonicum UT26S]
Length = 878
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 150/293 (51%), Gaps = 26/293 (8%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+EK + P
Sbjct: 20 LGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVGMKGPAQVALITGEEKIVPP 79
Query: 358 FSNHIACTVEMVSTD----------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DE 406
+ + CT E + + Y +DE Q+ +D RG+ +T LL +E
Sbjct: 80 GARYFLCTAESMPIGGGREPAQEGLKDYAFVALDEAQLGADPERGHIFTDRLLRARGREE 139
Query: 407 IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
+ G S+ +V+ + + E+ + RF L L L RS +VAFS
Sbjct: 140 TMILGSASIGRLVKALVPDA--EIIGR--PRFSTLSYAGAKKLSRLPK-RS--AIVAFSA 192
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ V + + V+ GAL P TR Q +F + E D LVA+DA+GMGLNL+
Sbjct: 193 EEVYAVAEMLRRFRGG-AAVVMGALSPRTRNAQVQMF--LNGEVDYLVATDAIGMGLNLD 249
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
+ V F SL K++G + + S++ QIAGRAGR + DG +L +D D
Sbjct: 250 VAHVAFASLRKFDGRRTRRLTVSEMAQIAGRAGRH---HRDGTFGSLGHEDGD 299
>gi|334345099|ref|YP_004553651.1| helicase domain-containing protein [Sphingobium chlorophenolicum
L-1]
gi|334101721|gb|AEG49145.1| helicase domain-containing protein [Sphingobium chlorophenolicum
L-1]
Length = 891
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 26/293 (8%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+EK + P
Sbjct: 20 LGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVGMKGPQQVALITGEEKIVPP 79
Query: 358 FSNHIACTVEMV--------STDEMYDVA--VIDEIQMMSDACRGYAWTRALLGLMA-DE 406
+ + CT E + + + + D A +DE Q+ +D RG+ +T LL +E
Sbjct: 80 GARYFLCTAESMPIGGGREPAQESLKDYAFVALDEAQLGADPERGHIFTDRLLRARGREE 139
Query: 407 IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
+ G S+ +V+ + + E+ + RF L L L RS +VAFS
Sbjct: 140 TMILGSASIGRLVKALVPDA--EIIGR--PRFSTLSYAGAKKLSRLPK-RS--AIVAFSA 192
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ V + + V+ GAL P TR Q +F + E D LVA+DA+GMGLNL+
Sbjct: 193 EEVYAVAEMLRRFRGG-AAVVMGALSPRTRNAQVQMF--LNGEVDYLVATDAIGMGLNLD 249
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
+ V F SL K++G + + S++ QIAGRAGR + DG +L +D D
Sbjct: 250 VAHVAFASLRKFDGRRTRRLTVSEMAQIAGRAGRH---HKDGTFGSLGHEDGD 299
>gi|297180167|gb|ADI16389.1| superfamily II DNA and RNA helicases [uncultured bacterium
HF130_12L15]
Length = 1179
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 141/274 (51%), Gaps = 21/274 (7%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHSSGVIGLPLRLLAREVYSRVAEKVGTANVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ D RG+ +T +L L DE L
Sbjct: 76 EKIQPPGARYSVCTVEAMPRETSAAFVAIDEVQLAGDLERGHVFTDRILHLRGRDETLLL 135
Query: 411 GDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G ++ +++K+ T + Y K + + RS +VAFS
Sbjct: 136 GAATMAGILQKLLKGVSVVTRPRMSHLAYAGSKKITRLPR---------RS--AIVAFSA 184
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ + I + V+ GAL P TR Q ++ Q + D LVA+DA+GMGLNL+
Sbjct: 185 DEVYGIAELIRRQRGG-AAVVLGALSPRTRNAQVEIY--QSGDVDFLVATDAIGMGLNLD 241
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ V F K++G + + +++ QIAGRAGR
Sbjct: 242 VDHVGFAQNRKFDGFQYRQLSAAELGQIAGRAGR 275
>gi|222150211|ref|YP_002551168.1| ATP-dependent helicase [Agrobacterium vitis S4]
gi|221737193|gb|ACM38156.1| ATP-dependent helicase [Agrobacterium vitis S4]
Length = 1047
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQ 351
R +I GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 6 RSVIAVLGPTNTGKTHYAIERMVAHGSGMIGLPLRLLAREVYTRLVERVGAAHVALITGE 65
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDEIQ+ D RG+ +T LL L +E L
Sbjct: 66 EKITPPNTRFSVCTVEALPRETKVAFVAIDEIQLAGDLERGHIFTDRLLHLRGREETLLL 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++ + G + E+ R L + + L +VAFS E++
Sbjct: 126 GSATMKPILQHLLP--GITVVER--PRLSQLFYAGEKKITRLPQR---TAIVAFSADEVY 178
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 179 SIAELIRRQRGG-AAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDHV 235
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 236 AFAQDRKFDGYQFRNLNPGELGQIAGRAGR 265
>gi|240141242|ref|YP_002965722.1| hypothetical protein MexAM1_META1p4834 [Methylobacterium extorquens
AM1]
gi|240011219|gb|ACS42445.1| conserved hypothetical protein with putative ATP-dependent RNA and
DNA helicase (N-terminal) and conserved C-terminal
DEAD/DEAH box domain protein (C-terminal)
[Methylobacterium extorquens AM1]
Length = 1131
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 144/272 (52%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +G +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVALITGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVA--VIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
EK + CT+E + D +DVA IDEIQ+ +D RG+ +T LL +E
Sbjct: 73 EKIKPDRPRYWICTIEAMPRD--FDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETL 130
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++L +V+ + + R L + + L + +VAFS E
Sbjct: 131 LIGSSTMLPLVQALIPG----VQTTTRPRLSSLTFAGEKKISRLPHR---TAIVAFSAEE 183
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ Q + D LVA+DAVGMGLNL++
Sbjct: 184 VYAIAELIRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAVGMGLNLDVD 240
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F + KY+G + + +++ QIAGRAGR
Sbjct: 241 HVAFAANWKYDGTRFRKLSPAEMGQIAGRAGR 272
>gi|414175655|ref|ZP_11430059.1| hypothetical protein HMPREF9695_03705 [Afipia broomeae ATCC 49717]
gi|410889484|gb|EKS37287.1| hypothetical protein HMPREF9695_03705 [Afipia broomeae ATCC 49717]
Length = 1121
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 142/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCS--LLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA EV++K+ A + L+TG+EK P
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIAARAGAGAVALITGEEKIKPP 83
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + TVE + D +DEIQ+ +D RG+ +T +L DE L G ++
Sbjct: 84 HARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRVLNRRGRDETLLLGAATMR 143
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 144 PIIERLLP--GANIVT------RPRLSQLE-FAGDRKITRQPRRTAIVAFSADEVYAIAE 194
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q ++F Q + D LVA+DAVGMGLNL++ V F S
Sbjct: 195 LIRRQ-HGGAAVVLGSLSPRTRNAQVDMF--QSGDVDYLVATDAVGMGLNLDVDHVAFAS 251
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + ++ QIAGRAGR
Sbjct: 252 DRKYDGYQFRRLTPAEFAQIAGRAGR 277
>gi|433772744|ref|YP_007303211.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
gi|433664759|gb|AGB43835.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
Length = 1118
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 152/307 (49%), Gaps = 21/307 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQ 351
R + GPTN+GKT+ A++R + + GI PLRLLA EV+ +V +G +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHETGIIGLPLRLLAREVYTRVCEKVGANKVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKIQPPGARYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G ++ +++++ T L Y K L + +VAFS
Sbjct: 136 GAATMHGILQRLLKGVSVVTRPRLSHLAYAGSKKLTRLPRRT-----------AIVAFSA 184
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ + I + V+ GAL P TR Q LF Q + D L+A+DA+GMGLNL+
Sbjct: 185 DEVYAIAELIRRQQGG-AAVVLGALSPRTRNAQVALF--QSGDVDYLIATDAIGMGLNLD 241
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586
+ V F K++G + + +++ QIAGRAGR G+T ++ D D + +
Sbjct: 242 LDHVAFAQNRKFDGYQYRNLTAAELGQIAGRAGRHLRDGTFGVTGQVDPLDEDLVQKIEG 301
Query: 587 QPFEVVK 593
F+ VK
Sbjct: 302 HDFDPVK 308
>gi|299132818|ref|ZP_07026013.1| helicase domain protein [Afipia sp. 1NLS2]
gi|298592955|gb|EFI53155.1| helicase domain protein [Afipia sp. 1NLS2]
Length = 1061
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 143/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV++K+ A +G +L+TG+EK P
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGMIGLPLRLLAREVYNKIAARVGADSVALITGEEKIKPP 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + TVE + D +DEIQ+ +D RG+ +T +L DE L G ++
Sbjct: 62 KARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRMLHRRGRDETLLLGAATMR 121
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + R + ++E GD + R +VAFS E++ +
Sbjct: 122 PLIERLLP--GANI----VTRPRLSLLE---FAGDRKITRQPRRTAIVAFSADEVYAIAE 172
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q + D LVA+DAVGMGLNL++ V F S
Sbjct: 173 LIRRQ-HGGAAVVLGSLSPRTRNAQVEMF--QSGDVDYLVATDAVGMGLNLDVDHVAFAS 229
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + ++ QIAGRAGR
Sbjct: 230 DRKYDGYQFRRLTPAEFAQIAGRAGR 255
>gi|359788797|ref|ZP_09291765.1| helicase domain-containing protein [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359255358|gb|EHK58276.1| helicase domain-containing protein [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 1166
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 147/304 (48%), Gaps = 32/304 (10%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQ 351
R + GPTN+GKT+ A++R + + G+ PLRLLA EV+ +V +G +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHESGLIGLPLRLLAREVYGRVCEKVGANKVALVTGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK L P + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKILPPGAKYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVV----RKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G ++ ++ R + T L Y K L + +VAFS
Sbjct: 136 GAATMQGILQRLLRGVSVVTRPRLSHLAYSGAKKLT-----------RLPPRSAIVAFSA 184
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ + I + V+ GAL P TR Q ++ Q + D LVA+DA+GMGLNL+
Sbjct: 185 DEVYAIGELIRRQRGG-VAVVLGALSPRTRNAQVAIY--QSGDVDFLVATDAIGMGLNLD 241
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-----------RGSIYPDGLTTTLNL 575
+ V F K++G + + S++ QIAGRAGR R +PD L +
Sbjct: 242 LDHVAFAQNRKFDGFQYRNLNASELGQIAGRAGRHLRDGTFGVTGRVDPFPDELVEKIES 301
Query: 576 DDLD 579
D D
Sbjct: 302 HDFD 305
>gi|402824780|ref|ZP_10874119.1| ATP-dependent helicase [Sphingomonas sp. LH128]
gi|402261711|gb|EJU11735.1| ATP-dependent helicase [Sphingomonas sp. LH128]
Length = 832
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 141/266 (53%), Gaps = 16/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+E+
Sbjct: 5 LGPTNTGKTHLAIERMCAHSSGMIGFPLRLLAREVYDRVVKIKGEASVALITGEERIEPK 64
Query: 358 FSNHIACTVEMVSTDE--MYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPS 414
+ ++ CT E + E M VA IDE Q+ +D RG+ +T LL +E + G +
Sbjct: 65 NARYLLCTAEAMPVSERSMAFVA-IDEAQLAADRERGHVFTDRLLHARGREETMILGSST 123
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
V +V+ + G E+ + RF L L V +VAFS +++ +
Sbjct: 124 VEPLVKALVP--GVEVVTR--PRFSTLTHAGAK---KLSRVPPRSAIVAFSTEQVYAIAE 176
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
+ + V+ GAL P+TR Q L+ Q E D LVA+DA+GMGLNL++ V F
Sbjct: 177 MLRRFRGG-AAVVMGALSPQTRNAQVALY--QSGEVDYLVATDAIGMGLNLDVEHVAFAG 233
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
LSKY+G + + ++ QIAGRAGR
Sbjct: 234 LSKYDGRRHRRLTPPEMAQIAGRAGR 259
>gi|390166272|ref|ZP_10218535.1| helicase domain-containing protein [Sphingobium indicum B90A]
gi|389590669|gb|EIM68654.1| helicase domain-containing protein [Sphingobium indicum B90A]
Length = 891
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 150/293 (51%), Gaps = 26/293 (8%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+EK + P
Sbjct: 20 LGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVGMKGPAQVALITGEEKIVPP 79
Query: 358 FSNHIACTVEMVSTD----------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DE 406
+ + CT E + + Y +DE Q+ +D RG+ +T LL +E
Sbjct: 80 GARYFLCTAESMPIGGGREPAQEGLKDYAFVALDEAQLGADPERGHIFTDRLLRARGREE 139
Query: 407 IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
+ G S+ +V+ + + E+ + RF L L L RS +VAFS
Sbjct: 140 TMILGSASIGRLVKALVPDA--EIIGR--PRFSTLSYAGAKKLSRLPK-RS--AIVAFSA 192
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ V + + V+ GAL P TR Q +F + E D LVA+DA+GMGLNL+
Sbjct: 193 EEVYAVAEMLRRFRGG-AAVVMGALSPRTRNAQVQMF--LNGEVDYLVATDAIGMGLNLD 249
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579
+ V F SL K++G + + +++ QIAGRAGR + DG +L +D D
Sbjct: 250 VAHVAFASLRKFDGRRTRRLTVAEMAQIAGRAGRH---HKDGTFGSLGHEDGD 299
>gi|418053804|ref|ZP_12691860.1| helicase domain protein [Hyphomicrobium denitrificans 1NES1]
gi|353211429|gb|EHB76829.1| helicase domain protein [Hyphomicrobium denitrificans 1NES1]
Length = 1017
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 151/305 (49%), Gaps = 13/305 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+DK+ GV +L+TG+
Sbjct: 10 RNVTAVLGPTNTGKTHLAIERMLGHNSGMIGLPLRLLAREVYDKIKTRAGVENVALITGE 69
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + TVE + D D IDEIQ+ D RG+ +T LL E L
Sbjct: 70 EKIKPERARYWVSTVEAMPRDIDVDFLAIDEIQLCGDPERGHVFTDRLLHARGRSETLLL 129
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ D + + G + R L + + L RS ++AFS ++++
Sbjct: 130 GAQTMRDAISDLIP--GANFISR--PRLSKLTYTGEKKITRL-PARS--AIIAFSAQDVY 182
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D EF +VA+DA+GMGLNL+I V
Sbjct: 183 ALAELIRRQRGG-AAVVLGALSPRTRNAQVALYQSGDVEF--IVATDAIGMGLNLDIDHV 239
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F +L K++G + ++ QIAGRAGR + G+T D D + F+
Sbjct: 240 AFSALRKFDGQNHRNLTPGEIGQIAGRAGRHMNDGTFGVTGGAEPLDADTVERLETHSFD 299
Query: 591 VVKKV 595
V+ +
Sbjct: 300 SVRTL 304
>gi|338741219|ref|YP_004678181.1| ATP-dependent RNA and DNA helicase [Hyphomicrobium sp. MC1]
gi|337761782|emb|CCB67617.1| conserved protein of unknown function; putative ATP-dependent RNA
and DNA helicase (N-terminal) and conserved C-terminal
DEAD/DEAH box domain protein (C-terminal)
[Hyphomicrobium sp. MC1]
Length = 1071
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 152/305 (49%), Gaps = 13/305 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQ 351
R + GPTN+GKT+ A++R + + G+ PLRLLA EV+D++ +G +L+TG+
Sbjct: 10 RNVTAVLGPTNTGKTHLAIERMLGHESGMIGLPLRLLAREVYDRIKQRVGADKVALITGE 69
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + TVE + D D IDEIQ+ D RG+ +T LL E L
Sbjct: 70 EKIKPERARYWVSTVEAMPRDIDVDFLAIDEIQLCGDPERGHVFTDRLLHARGRSETLLL 129
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ D + + G + R L + + L RS +VAFS +E++
Sbjct: 130 GAQTMRDAISDLIP--GANFISR--PRLSKLTYSGEKKITRL-PARS--AIVAFSAQEVY 182
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D EF LVA+DA+GMGLNL++ V
Sbjct: 183 ALAELIRRQRGG-AAVVLGALSPRTRNAQVALYQSGDVEF--LVATDAIGMGLNLDVDHV 239
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F +L K++G + ++ QIAGRAGR + G+T D D + F+
Sbjct: 240 AFSALRKFDGYNHRNLTPGEIGQIAGRAGRHMNDGTFGVTGGAEALDADMVERLETHSFD 299
Query: 591 VVKKV 595
++ +
Sbjct: 300 SIRTL 304
>gi|418409168|ref|ZP_12982481.1| ATP-dependent helicase [Agrobacterium tumefaciens 5A]
gi|358004485|gb|EHJ96813.1| ATP-dependent helicase [Agrobacterium tumefaciens 5A]
Length = 1028
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKIAPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSAEE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIETHQ-FDSVKVLQWRTKNFDFSSI 312
>gi|110635704|ref|YP_675912.1| helicase-like protein [Chelativorans sp. BNC1]
gi|110286688|gb|ABG64747.1| helicase-like protein [Chelativorans sp. BNC1]
Length = 1037
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R I GPTN+GKT+ A++R + + G+ PLRLLA EV+ +V + +G +L+TG+
Sbjct: 16 RGITAVLGPTNTGKTHLAIERMVAHESGLIGLPLRLLAREVYHRVASRVGEQNVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMV--STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
EK + P + + CTVE + STD + IDE+Q+ +D RG+ +T LL L E
Sbjct: 76 EKIIPPGARYSVCTVEAMPRSTDAAF--VAIDEVQLAADLERGHIFTDRLLNLRGRQETL 133
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ + R L + L RS +VAFS E
Sbjct: 134 LLGAGTMRGILEKMLRG----ISVVTRPRMSVLTYAGSKKITRLPR-RS--AIVAFSADE 186
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + ++ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++
Sbjct: 187 VYAIGELIRRQRGG-AAIVLGALSPRTRNAQVALY--QSGDVDYLVATDAIGMGLNLDVD 243
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + +++ QIAGRAGR
Sbjct: 244 HVAFAQNQKFDGFQYRELTAAELGQIAGRAGR 275
>gi|118591276|ref|ZP_01548674.1| helicase-like protein [Stappia aggregata IAM 12614]
gi|118435948|gb|EAV42591.1| helicase-like protein [Stappia aggregata IAM 12614]
Length = 1060
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 154/311 (49%), Gaps = 14/311 (4%)
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
+ +P T R + GPTN+GKT+ A++R + G+ PLRLLA EV+++V
Sbjct: 1 MPRPQTMPLPPSARSRTVTAVLGPTNTGKTHLAIERMLAQPSGLIGLPLRLLAREVYNRV 60
Query: 339 --NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
A +L+TG+EK + TVE + D D IDE+Q+ + RG+ +T
Sbjct: 61 ADRAGPDAVALITGEEKIVPKNPRFWVSTVEAMPLDLKTDFVAIDEVQLAGNLDRGHVFT 120
Query: 397 RALLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
+L + E L G + ++ K+ L+ R L + L
Sbjct: 121 DRILNVRGQSETLLLGAATARPLLEKLLPG----LNVVTRPRMSVLEYAGSKKVSRL-PA 175
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
RS +VAFS E++ + I + V+ G+L P TR Q LF Q+ + D LVA
Sbjct: 176 RS--AIVAFSSDEVYSIAELIRRQRGG-AAVVLGSLSPRTRNAQVELF--QNGDVDHLVA 230
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575
+DA+GMGLNL++ + F KY+G + + S++ QIAGRAGR G+T ++
Sbjct: 231 TDAIGMGLNLDVHHIAFAGNRKYDGYQYRQLTASEMGQIAGRAGRHTKDGTFGVTGRVDP 290
Query: 576 DDLDYLIECLK 586
D D+L+E ++
Sbjct: 291 LD-DHLVEQIE 300
>gi|402772688|ref|YP_006592225.1| helicase domain-containing protein [Methylocystis sp. SC2]
gi|401774708|emb|CCJ07574.1| Helicase domain protein [Methylocystis sp. SC2]
Length = 1056
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 142/278 (51%), Gaps = 15/278 (5%)
Query: 287 PFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-Y 344
P AR R + GPTN+GKT++A++R + G+ PLRLLA EV+++V A +G
Sbjct: 14 PRARPFDRGVAAVLGPTNTGKTHHAIERMLSFPSGVIGLPLRLLAREVYNRVAARVGADN 73
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
+L+TG+EK + TVE + D D IDEIQ+ +D RG+ +T LL
Sbjct: 74 VALITGEEKIKPRAPAYWVATVEAMPRDVQADFVAIDEIQLAADLDRGHIFTDRLL---- 129
Query: 405 DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVV 462
H G L + + EL +P + + + GD + R +V
Sbjct: 130 ---HWRGRQETLLIGAATMAPLVTELFPGAPIFTRPRLSKL-SFAGDKKISRLPPRSAIV 185
Query: 463 AFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522
AFS E++ + I++ V+ G L P TR Q L+ Q + D +VA+DA+GMG
Sbjct: 186 AFSAEEVYAIAELIKRQRGG-AAVVLGVLSPRTRNAQIELY--QGGDVDYIVATDAIGMG 242
Query: 523 LNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
LNL++ V F S K++G + + ++ QIAGRAGR
Sbjct: 243 LNLDVDHVAFASDRKFDGLRHRRLTPAEFGQIAGRAGR 280
>gi|393770819|ref|ZP_10359296.1| ATP-dependent helicase [Novosphingobium sp. Rr 2-17]
gi|392723717|gb|EIZ81105.1| ATP-dependent helicase [Novosphingobium sp. Rr 2-17]
Length = 851
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 143/266 (53%), Gaps = 16/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGV--YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+E+
Sbjct: 21 LGPTNTGKTHLAIERMCAHSSGMIGFPLRLLAREVYDRVVKIKGEGQVALITGEERIEPK 80
Query: 358 FSNHIACTVEMVSTDE--MYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPS 414
+ ++ CTVE + E M VA +DE Q+ +D RG+ +T LL +E + G +
Sbjct: 81 GARYLLCTVEAMPVMERSMAFVA-LDEAQLAADRERGHVFTDRLLHARGREETMILGSAT 139
Query: 415 VLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474
+ +VR + G E+ + RF L L V +VAFS +++ +
Sbjct: 140 LEPMVRALVP--GAEIVTR--PRFSTLTHAGAK---KLSRVPPRSAIVAFSAEQVYAIAE 192
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
+ + V+ GAL P+TR Q L+ Q E D LVA+DA+GMGLNL+I V F
Sbjct: 193 MLRRFRGG-AAVVMGALSPQTRNAQVALY--QSGEVDYLVATDAIGMGLNLDIEHVAFAG 249
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
LSK++G + + +++ QIAGRAGR
Sbjct: 250 LSKFDGVRQRRLTTAEMAQIAGRAGR 275
>gi|440228414|ref|YP_007335505.1| ATP-dependent DNA helicase [Rhizobium tropici CIAT 899]
gi|440039925|gb|AGB72959.1| ATP-dependent DNA helicase [Rhizobium tropici CIAT 899]
Length = 1045
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 154/303 (50%), Gaps = 13/303 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G + +L+TG+
Sbjct: 17 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRVVEKVGAHNVALVTGE 76
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ D RG+ +T LL L DE L
Sbjct: 77 EKISPPNARYSVCTVEAMPRETRASFVAIDEVQLAGDLERGHIFTDRLLHLRGRDETLLL 136
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ G + E+ R L + + L +VAFS E++
Sbjct: 137 GAGTMRPILEQLLP--GITVLER--PRLSHLFYAGQKKITRLPQR---TAIVAFSADEVY 189
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 190 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 246
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F K++G + + ++ QIAGRAGR G+T ++ D + + F+
Sbjct: 247 AFAQDRKFDGYQFRNLNPGELGQIAGRAGRHLKDGTFGVTGQVDPFDDELVRRIEGHEFD 306
Query: 591 VVK 593
+VK
Sbjct: 307 MVK 309
>gi|383768911|ref|YP_005447974.1| ATP-dependent helicase [Bradyrhizobium sp. S23321]
gi|381357032|dbj|BAL73862.1| ATP-dependent helicase [Bradyrhizobium sp. S23321]
Length = 1146
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 28/293 (9%)
Query: 282 PHTWFPFA-------RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
P + PFA RV + GPTN+GKT+ A++R + G+ PLRLLA EV
Sbjct: 2 PFSSSPFASERARSDRVPGAGVTAVLGPTNTGKTHLAIERMLAHSSGVIGLPLRLLAREV 61
Query: 335 FDKVNA-LGVYC-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
++K+ A +G +L+TG+EK + TVE + D +DEIQ+ SD RG
Sbjct: 62 YNKIVARVGPEAVALVTGEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERG 121
Query: 393 YAWTRALLGLMA-DEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKT 447
+ +T +L DE L G ++ ++ ++ T L + + + + + +
Sbjct: 122 HVFTDRILNRRGRDETLLLGAATMRPIIERLLPGVSMITRPRLSQLEFAGDRKITRQPRR 181
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
+VAFS E++ + I K + V+ G+L P TR Q +F Q
Sbjct: 182 T-----------AIVAFSADEVYAIAELI-KRQHGGAAVVLGSLSPRTRNAQVEMF--QS 227
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ D LVA+DAVGMGLNL++ V F S KY+G + + S+ QIAGRAGR
Sbjct: 228 GDVDYLVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQIAGRAGR 280
>gi|418063152|ref|ZP_12700866.1| helicase domain-containing protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373561366|gb|EHP87602.1| helicase domain-containing protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 837
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +G +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVALITGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CT+E + D IDEIQ+ +D RG+ +T LL +E L
Sbjct: 73 EKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLI 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++L +V+ + + R L + + L + +VAFS E++
Sbjct: 133 GSSTMLPLVQALIPG----VQTTTRPRLSSLTFAGEKKISRLPHR---TAIVAFSAEEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DAVGMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAVGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + KY+G + + +++ QIAGRAGR
Sbjct: 243 AFAANWKYDGTRFRKLSPAEMGQIAGRAGR 272
>gi|325294123|ref|YP_004279987.1| ATP-dependent helicase [Agrobacterium sp. H13-3]
gi|325061976|gb|ADY65667.1| ATP-dependent helicase [Agrobacterium sp. H13-3]
Length = 1028
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKIAPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSAEE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIESHQ-FDSVKVLQWRTKNFDFSSI 312
>gi|218532734|ref|YP_002423550.1| helicase [Methylobacterium extorquens CM4]
gi|218525037|gb|ACK85622.1| helicase domain protein [Methylobacterium extorquens CM4]
Length = 1136
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +G +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVALITGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CT+E + D IDEIQ+ +D RG+ +T LL +E L
Sbjct: 73 EKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLI 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++L +V+ + + R L + + L + +VAFS E++
Sbjct: 133 GSSTMLPLVQALIPG----VQTTTRPRLSSLTFAGEKKISRLPHR---TAIVAFSAEEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DAVGMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAVGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + KY+G + + +++ QIAGRAGR
Sbjct: 243 AFAANWKYDGTRFRKLSPAEMGQIAGRAGR 272
>gi|254563753|ref|YP_003070848.1| hypothetical protein METDI5429 [Methylobacterium extorquens DM4]
gi|254271031|emb|CAX27038.1| conserved hypothetical protein; putative ATP-dependent RNA and DNA
helicase (N-terminal) and conserved C-terminal DEAD/DEAH
box domain protein (C-terminal) [Methylobacterium
extorquens DM4]
Length = 1135
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +G +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVALITGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CT+E + D IDEIQ+ +D RG+ +T LL +E L
Sbjct: 73 EKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLI 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++L +V+ + + R L + + L + +VAFS E++
Sbjct: 133 GSSTMLPLVQALIPG----VQTTTRPRLSSLTFAGEKKISRLPHR---TAIVAFSAEEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DAVGMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAVGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + KY+G + + +++ QIAGRAGR
Sbjct: 243 AFAANWKYDGTRFRKLSPAEMGQIAGRAGR 272
>gi|163853790|ref|YP_001641833.1| helicase domain-containing protein [Methylobacterium extorquens
PA1]
gi|163665395|gb|ABY32762.1| helicase domain protein [Methylobacterium extorquens PA1]
Length = 1140
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V A +G +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVALITGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CT+E + D IDEIQ+ +D RG+ +T LL +E L
Sbjct: 73 EKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETLLI 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++L +V+ + + R L + + L + +VAFS E++
Sbjct: 133 GSSTMLPLVQALIPG----VQTTTRPRLSSLTFAGEKKISRLPHR---TAIVAFSAEEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DAVGMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVELY--QSGDVDYLVATDAVGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F + KY+G + + +++ QIAGRAGR
Sbjct: 243 AFAANWKYDGTRFRKLSPAEMGQIAGRAGR 272
>gi|395491122|ref|ZP_10422701.1| helicase domain-containing protein [Sphingomonas sp. PAMC 26617]
Length = 838
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+EK +
Sbjct: 13 LGPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKIKGANRVALITGEEKIVPK 72
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ CT E + D +DE Q+ +D RG+ +T R L +E L G ++
Sbjct: 73 DARWFLCTAESMPVDRDLAFVAVDEAQLGADMERGHVFTDRILRARGREETMLLGSEALR 132
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+V+ + G E+ + RF L + L RS +VAFS E++ V +
Sbjct: 133 PMVKALVP--GIEIINR--PRFSTLSYAGAKKISRLPK-RS--AIVAFSAEEVYAVAEML 185
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F SL+
Sbjct: 186 -RRLRGGAAVVMGALSPRTRNAQVAMF--QAGEVDYLVATDAIGMGLNMDVTHVAFASLN 242
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + +++ QIAGRAGR
Sbjct: 243 KFDGHRQRRLTVAEMAQIAGRAGR 266
>gi|404251913|ref|ZP_10955881.1| helicase domain-containing protein, partial [Sphingomonas sp. PAMC
26621]
Length = 765
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V + +L+TG+EK +
Sbjct: 13 LGPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKIKGANRVALITGEEKIVPK 72
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ CT E + D +DE Q+ +D RG+ +T R L +E L G ++
Sbjct: 73 DARWFLCTAESMPVDRDLAFVAVDEAQLGADMERGHVFTDRILRARGREETMLLGSEALR 132
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+V+ + G E+ + RF L + L RS +VAFS E++ V +
Sbjct: 133 PMVKALVP--GIEIINR--PRFSTLSYAGAKKISRLPK-RS--AIVAFSAEEVYAVAEML 185
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F SL+
Sbjct: 186 -RRLRGGAAVVMGALSPRTRNAQVAMF--QAGEVDYLVATDAIGMGLNMDVTHVAFASLN 242
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + +++ QIAGRAGR
Sbjct: 243 KFDGHRQRRLTVAEMAQIAGRAGR 266
>gi|390448930|ref|ZP_10234544.1| helicase-like protein [Nitratireductor aquibiodomus RA22]
gi|389665245|gb|EIM76719.1| helicase-like protein [Nitratireductor aquibiodomus RA22]
Length = 1006
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LG-VYCSLLTGQ 351
R + GPTN+GKT+ A++R + GI PLRLLA EV+ +V A +G + +L+TG+
Sbjct: 16 RNVTAILGPTNTGKTHLAIERMVAHSSGIIGLPLRLLAREVYSRVVAKVGEQHVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ +D RG+ +T +L L +E L
Sbjct: 76 EKIAPPGARFSVCTVEAMPREADVAFVAIDEVQLAADLERGHIFTDRILHLRGREETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ L R L + L RS +VAFS E++
Sbjct: 136 GAGTMRGILEKLLPG----LSVITRPRMSVLTYSGSRKITRLPR-RS--AIVAFSSDEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIGELIRRQRGG-VAVVLGALSPRTRNAQVALY--QSGDVDYLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ QIAGRAGR
Sbjct: 246 AFAQNRKFDGFQYRDLNPAELGQIAGRAGR 275
>gi|75674607|ref|YP_317028.1| helicase [Nitrobacter winogradskyi Nb-255]
gi|74419477|gb|ABA03676.1| helicase [Nitrobacter winogradskyi Nb-255]
Length = 1124
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 145/278 (52%), Gaps = 21/278 (7%)
Query: 290 RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSL 347
R + + GPTN+GKT+ A++R + GI PLRLLA E++DK V+ GV +L
Sbjct: 14 RALGAGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLARELYDKIVDRAGVDSVAL 73
Query: 348 LTGQEKKLVPFSNHIACTVEMVSTDEMYDVA--VIDEIQMMSDACRGYAWTRALLGLMA- 404
+TG+EK TVE + D DVA IDEIQ+ +D RG+ +T +L
Sbjct: 74 VTGEEKIKPARPRFWVSTVEAMPRD--LDVAFLAIDEIQIAADLERGHVFTDRILHRRGR 131
Query: 405 DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVV 462
DE L G ++ +V +I G + +P + + + GD + R +V
Sbjct: 132 DETLLLGAATMRPIVERILP--GASIVT------RPRLSQLE-FAGDRKITRQPRRTAIV 182
Query: 463 AFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522
AFS E++ + I + V+ G+L P TR Q +F Q + D LVA+DAVGMG
Sbjct: 183 AFSADEVYAIAELIRRQRGG-AAVVLGSLSPRTRNAQVEMF--QSGDVDYLVATDAVGMG 239
Query: 523 LNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
LNL++ V F S KY+G + + ++ QIAGRAGR
Sbjct: 240 LNLDVDHVAFASDRKYDGYQFRRLTPAEFAQIAGRAGR 277
>gi|335033685|ref|ZP_08527050.1| ATP-dependent helicase [Agrobacterium sp. ATCC 31749]
gi|333794976|gb|EGL66308.1| ATP-dependent helicase [Agrobacterium sp. ATCC 31749]
Length = 1033
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSAEE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIETHQ-FDAVKVLQWRTKNFDFSSI 312
>gi|159185362|ref|NP_355683.2| ATP-dependent helicase [Agrobacterium fabrum str. C58]
gi|159140613|gb|AAK88468.2| ATP-dependent helicase [Agrobacterium fabrum str. C58]
Length = 1032
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSAEE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIETHQ-FDAVKVLQWRTKNFDFSSI 312
>gi|399039778|ref|ZP_10735287.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398062191|gb|EJL53972.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 1012
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 144/270 (53%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G+ +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVAEKVGIQNVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ D RG+ +T +L L DE L
Sbjct: 73 EKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++++ G + E+ R L + + L RS +VAFS E++
Sbjct: 133 GAGTMRPILQQLLP--GITVVER--PRLSQLFYAGQKKITRLPQ-RS--AIVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ QIAGRAGR
Sbjct: 243 AFAQDRKFDGYQFRNLNSAELGQIAGRAGR 272
>gi|86359601|ref|YP_471493.1| ATP-dependent DNA helicase [Rhizobium etli CFN 42]
gi|86283703|gb|ABC92766.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
Length = 1052
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G+ +L+TG+
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGLQNVALVTGE 65
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ D RG+ +T +L L DE L
Sbjct: 66 EKISPPDARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++++I G + E+ R L+ + + L RS +VAFS E++
Sbjct: 126 GAATMRPILQQILP--GITIVER--PRLSHLLYAGQKKITRLPQ-RS--AIVAFSADEVY 178
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ +VA+DA+GMGLNL++ V
Sbjct: 179 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--MVATDAIGMGLNLDVDHV 235
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ QIAGRAGR
Sbjct: 236 AFAQDRKFDGYQFRNLNPAELGQIAGRAGR 265
>gi|409439485|ref|ZP_11266534.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
gi|408748861|emb|CCM77715.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
Length = 1011
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 144/270 (53%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G+ +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVAEKVGIQNVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ D RG+ +T LL L DE L
Sbjct: 73 EKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRLLHLRGRDETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++++ G + E+ R L + + L RS +VAFS E++
Sbjct: 133 GAGTMRPILQQLLP--GITVVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ QIAGRAGR
Sbjct: 243 AFAQDRKFDGYQFRNLNPAELGQIAGRAGR 272
>gi|222087733|ref|YP_002546270.1| ATP-dependent DNA helicase [Agrobacterium radiobacter K84]
gi|221725181|gb|ACM28337.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
Length = 1057
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +GV +L+TG+
Sbjct: 17 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 76
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ D RG+ +T +L L DE L
Sbjct: 77 EKISPPNARYSVCTVEAMPRETRASFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 136
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ G + E+ R L + + L +VAFS E++
Sbjct: 137 GAGTMRPILEQLLP--GITVVER--PRLSHLFYAGQKKITRLPQR---TAIVAFSADEVY 189
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 190 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 246
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 247 AFAQDRKFDGYQFRNLNPGELGQIAGRAGR 276
>gi|326386139|ref|ZP_08207763.1| helicase-like protein [Novosphingobium nitrogenifigens DSM 19370]
gi|326209364|gb|EGD60157.1| helicase-like protein [Novosphingobium nitrogenifigens DSM 19370]
Length = 863
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 142/276 (51%), Gaps = 16/276 (5%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG+E+
Sbjct: 35 GPTNTGKTHLAIERLCAHSSGAIGFPLRLLAREVYDRVVAIKGPAQVALITGEERIEPKN 94
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLD 417
+ + CT E + IDE Q+ +D RG+ +T LL +E + G ++
Sbjct: 95 ARWLLCTAEAMPQRPDLAFVAIDEAQLSADPERGHVFTDRLLHTRGREETMILGSATLEP 154
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
++R + E E+ + RF L L + +VAFS +++ + +
Sbjct: 155 MIRALVPEA--EVISR--PRFSTLSHAGAK---KLSRIPPRSAIVAFSAEQVYAMAEMLR 207
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ V+ GAL P+TR Q ++ Q E D LVA+DA+GMGLNL++ V F LSK
Sbjct: 208 RFRGG-AAVVMGALSPQTRNAQVAMY--QAGEVDYLVATDAIGMGLNLDVHHVAFAGLSK 264
Query: 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573
Y+G + + +++ QIAGRAGR + DG TL
Sbjct: 265 YDGHRQRRLTTAEMAQIAGRAGRH---HKDGTFGTL 297
>gi|393720050|ref|ZP_10339977.1| helicase domain-containing protein [Sphingomonas echinoides ATCC
14820]
Length = 844
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 138/264 (52%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G+ PLRLLA EV+D+V L +L+TG+EK +
Sbjct: 18 LGPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKLKGETRVALITGEEKIVPK 77
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
+ CT E + D+ +DE Q+ +D RG+ +T R L +E L G
Sbjct: 78 DARWFLCTAESMPLDKDLAFVALDEAQLGADPERGHVFTDRILRARGREETMLLGS---- 133
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+ +R + ++ + RF L + L RS +VAFS E++ V +
Sbjct: 134 EALRPMLKALVPKIEIINRPRFSTLTYAGAKKISRLPK-RS--AIVAFSAEEVYAVAEML 190
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F SL+
Sbjct: 191 -RRLRGGAAVVMGALSPRTRNAQVAMF--QAGEVDYLVATDAIGMGLNMDVAHVAFASLN 247
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + +++ QIAGRAGR
Sbjct: 248 KFDGHRQRRLRIAEMAQIAGRAGR 271
>gi|367476476|ref|ZP_09475856.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365271231|emb|CCD88324.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 1160
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 148/287 (51%), Gaps = 25/287 (8%)
Query: 287 PFARVMKRK--------IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
PF R+ R + GPTN+GKT+ A++R + GI PLRLLA EV++K+
Sbjct: 11 PFERMSDRAPDRAPGSGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKI 70
Query: 339 -NALGVYC-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT 396
+ +G +L+TG+EK + TVE + D +DEIQ+ SD RG+ +T
Sbjct: 71 ADRVGSEAVALITGEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFT 130
Query: 397 RALLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
+L DE L G ++ ++ ++ G + +P + + + GD +
Sbjct: 131 DRILNRRGRDETLLLGAATMRPIIERLLP--GASMVT------RPRLSQLE-FAGDRKIT 181
Query: 456 RSG--DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
R +VAFS E++ + I + + V+ G+L P TR Q +F Q+ + D L
Sbjct: 182 RQPRRTAIVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGDVDYL 238
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
VA+DAVGMGLNL++ V F S KY+G + + S+ QIAGRAGR
Sbjct: 239 VATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQIAGRAGR 285
>gi|402580579|gb|EJW74529.1| hypothetical protein WUBG_14562, partial [Wuchereria bancrofti]
Length = 213
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 110/186 (59%), Gaps = 10/186 (5%)
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF--YSLSKYNGDKI 543
VIYGALPP T+ QA FN+ + +V+VA+DAVGMGLNLNIRR++F + ++ +
Sbjct: 18 VIYGALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRIIFVQFPFGEHQAN-- 75
Query: 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQ 603
V Q+AGRAGR S Y G TTL D+ L +K+P + ++ G+ P EQ
Sbjct: 76 -----YHVMQVAGRAGRFQSAYQKGWVTTLRPADMRLLEAFMKEPIKPIETAGIAPTSEQ 130
Query: 604 VELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFC 663
+E F+ L + +F +++ F L + LC + +K+A +++ V LS++ ++ FC
Sbjct: 131 LETFSYHLPHASFLSIIDMFISISSLSKKFHLCDIEQFRKLAELIDDVP-LSIKVKYAFC 189
Query: 664 FAPVNI 669
APV++
Sbjct: 190 TAPVDM 195
>gi|398378112|ref|ZP_10536279.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397725570|gb|EJK86019.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 1044
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +GV +L+TG+
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 65
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ D RG+ +T +L L DE L
Sbjct: 66 EKISPPNARYSVCTVEAMPRETRASFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ G + E+ R L + + L +VAFS E++
Sbjct: 126 GAGTMRPILEQLLP--GITVVER--PRLSHLFYAGQKKITRLPQR---TAIVAFSADEVY 178
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 179 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 235
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 236 AFAQDRKFDGYQFRNLNPGELGQIAGRAGR 265
>gi|386399858|ref|ZP_10084636.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740484|gb|EIG60680.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 1148
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 147/288 (51%), Gaps = 23/288 (7%)
Query: 282 PHTWFPFA--RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
P + PFA R+ + GPTN+GKT+ A++R + G+ PLRLLA EV++K+
Sbjct: 2 PFSSSPFASERLPGAGVTAVLGPTNTGKTHLAIERMLAHPSGMIGLPLRLLAREVYNKIA 61
Query: 340 A-LGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
A +G +L+TG+EK + TVE + D +DE+Q+ SD RG+ +T
Sbjct: 62 ARVGPDAVALVTGEEKIKPKAPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTD 121
Query: 398 ALLGLMA-DEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDL 452
+L DE L G ++ ++ ++ T L + + + + + +
Sbjct: 122 RILNRRGRDETLLLGAATMRPIIERLLPGVSMITRPRLSQLEFAGDRKITRQPRRT---- 177
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
+VAFS E++ + I + + V+ G+L P TR Q +F Q+ E D
Sbjct: 178 -------AIVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGEVDY 227
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
LVA+DAVGMGLNL++ V F S K++G + + S+ QIAGRAGR
Sbjct: 228 LVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFGQIAGRAGR 275
>gi|359399021|ref|ZP_09192029.1| ATP-dependent helicase [Novosphingobium pentaromativorans US6-1]
gi|357599566|gb|EHJ61276.1| ATP-dependent helicase [Novosphingobium pentaromativorans US6-1]
Length = 867
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 138/265 (52%), Gaps = 14/265 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG+E+
Sbjct: 34 LGPTNTGKTHLAIERMCAHSSGAIGFPLRLLAREVYDRVCAIKGEQNVALITGEERIEPK 93
Query: 358 FSNHIACTVE-MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
+ ++ CT E M D IDE Q+ +D RG+ +T LL +E + G ++
Sbjct: 94 HARYLLCTAEAMPVLDRSLAFVAIDEAQLGADRERGHVFTDRLLHARGREETMILGSSTL 153
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+VR + E+ + RF L L + +VAFS +++ +
Sbjct: 154 EPMVRALVPRA--EIVTR--PRFSTLSHAGAK---KLSRIPPRSAIVAFSTEQVYAIAEM 206
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ + V+ GAL P+TR Q L+ Q E D LVA+DA+GMGLNL++ V F L
Sbjct: 207 LRRFRGG-AAVVMGALSPQTRNAQVALY--QSGEVDYLVATDAIGMGLNLDVEHVAFAGL 263
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SK++G + + S++ QIAGRAGR
Sbjct: 264 SKFDGVRHRRLTTSEMAQIAGRAGR 288
>gi|148258716|ref|YP_001243301.1| ATP-dependent RNA and DNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410889|gb|ABQ39395.1| putative ATP-dependent RNA and DNA helicase [Bradyrhizobium sp.
BTAi1]
Length = 1177
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 145/276 (52%), Gaps = 17/276 (6%)
Query: 290 RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVYC-SL 347
RV + GPTN+GKT+ A++R + GI PLRLLA EV++K+ + +G +L
Sbjct: 18 RVAGNGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSEAVAL 77
Query: 348 LTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DE 406
+TG+EK + TVE + D +DEIQ+ +D RG+ +T +L DE
Sbjct: 78 ITGEEKIKPKAPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDE 137
Query: 407 IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAF 464
L G ++ ++ ++ G + +P + + + GD + R +VAF
Sbjct: 138 TLLLGAATMRPIIERLLP--GASMVT------RPRLSQLE-FAGDRKITRQPRRTAIVAF 188
Query: 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
S E++ + I + + V+ G+L P TR Q +F Q+ + D LVA+DA+GMGLN
Sbjct: 189 SADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVEMF--QNGDVDYLVATDAIGMGLN 245
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
L++ V F S KY+G + + S+ QIAGRAGR
Sbjct: 246 LDVDHVAFASDRKYDGYQFRRLNPSEFAQIAGRAGR 281
>gi|418297917|ref|ZP_12909757.1| ATP-dependent helicase [Agrobacterium tumefaciens CCNWGS0286]
gi|355537287|gb|EHH06547.1| ATP-dependent helicase [Agrobacterium tumefaciens CCNWGS0286]
Length = 1026
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSADE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIETHQ-FDAVKVLQWRTKNFDFSSI 312
>gi|374572237|ref|ZP_09645333.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374420558|gb|EHR00091.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 1137
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 147/288 (51%), Gaps = 23/288 (7%)
Query: 282 PHTWFPFA--RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
P + PFA R+ + GPTN+GKT+ A++R + G+ PLRLLA EV++K+
Sbjct: 2 PFSSSPFASDRLPGAGVTAVLGPTNTGKTHLAIERMLAHPSGMIGLPLRLLAREVYNKIA 61
Query: 340 A-LGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTR 397
A +G +L+TG+EK + TVE + D +DE+Q+ SD RG+ +T
Sbjct: 62 ARVGPDAVALVTGEEKIKPKAPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTD 121
Query: 398 ALLGLMA-DEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDL 452
+L DE L G ++ ++ ++ T L + + + + + +
Sbjct: 122 RILNRRGRDETLLLGAATMRPIIERLLPGVSMITRPRLSQLEFAGDRKITRQPRRT---- 177
Query: 453 RNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV 512
+VAFS E++ + I + + V+ G+L P TR Q +F Q+ E D
Sbjct: 178 -------AIVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGEVDY 227
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
LVA+DAVGMGLNL++ V F S K++G + + S+ QIAGRAGR
Sbjct: 228 LVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFAQIAGRAGR 275
>gi|365893471|ref|ZP_09431646.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365425773|emb|CCE04188.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 1192
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 147/283 (51%), Gaps = 21/283 (7%)
Query: 287 PFARVMKRK----IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNAL 341
PF R R + GPTN+GKT+ A++R + GI PLRLLA EV++K V+ +
Sbjct: 11 PFERTPDRAAGSGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIVDRV 70
Query: 342 GV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
G +L+TG+EK + TVE + D +DE+Q+ +D RG+ +T +L
Sbjct: 71 GTELVALITGEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEVQIAADLERGHVFTDRIL 130
Query: 401 GLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG- 458
DE L G ++ ++ ++ G L +P + + + GD + R
Sbjct: 131 NRRGRDETLLLGAATMRPIIERLLP--GASLV------TRPRLSQLE-FAGDRKITRQPR 181
Query: 459 -DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
+VAFS E++ + I + + V+ G+L P TR Q +F Q+ + D LVA+D
Sbjct: 182 RTAIVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGDVDYLVATD 238
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
A+GMGLNL++ V F S KY+G + + ++ QIAGRAGR
Sbjct: 239 AIGMGLNLDVDHVAFASDRKYDGYQFRRLTPAEFAQIAGRAGR 281
>gi|408786434|ref|ZP_11198171.1| ATP-dependent helicase [Rhizobium lupini HPC(L)]
gi|408487806|gb|EKJ96123.1| ATP-dependent helicase [Rhizobium lupini HPC(L)]
Length = 1027
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSADE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIETHQ-FDAVKVLQWRTKNFDFSSI 312
>gi|417858292|ref|ZP_12503349.1| ATP-dependent helicase [Agrobacterium tumefaciens F2]
gi|338824296|gb|EGP58263.1| ATP-dependent helicase [Agrobacterium tumefaciens F2]
Length = 1017
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSADE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIETHQ-FDAVKVLQWRTKNFDFSSI 312
>gi|424911485|ref|ZP_18334862.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847516|gb|EJB00039.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 1027
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 164/333 (49%), Gaps = 33/333 (9%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNV--ALIT 63
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ ++ K+ G + E+ R L + + L +VAFS E
Sbjct: 124 LLGAGTMRPILEKLLP--GITVVER--PRLSQLFYAGQKKITRLPQR---TAIVAFSADE 176
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + + + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 177 VYAIAELVRRQRGG-AAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVD 233
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP 588
V F K++G + + ++ QIAGRAGR +L D + + P
Sbjct: 234 HVAFAQDRKFDGYQFRNLNPGEIGQIAGRAGR-------------HLRDGTFGVTGRVDP 280
Query: 589 F--EVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
F E+V+++ F+ V++ + N+ F +
Sbjct: 281 FDDELVERIETHQ-FDAVKVLQWRTKNFDFSSI 312
>gi|334139625|ref|YP_004532819.1| ATP-dependent helicase [Novosphingobium sp. PP1Y]
gi|333937643|emb|CCA91001.1| ATP-dependent helicase [Novosphingobium sp. PP1Y]
Length = 854
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 138/265 (52%), Gaps = 14/265 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG+E+
Sbjct: 21 LGPTNTGKTHLAIERMCAHSSGAIGFPLRLLAREVYDRVCAIKGEQNVALITGEERIEPK 80
Query: 358 FSNHIACTVE-MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
+ ++ CT E M D IDE Q+ +D RG+ +T LL +E + G ++
Sbjct: 81 HARYLLCTAEAMPVLDRSLAFVAIDEAQLGADRERGHVFTDRLLHARGREETMILGSSTL 140
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+VR + E+ + RF L L + +VAFS +++ +
Sbjct: 141 EPMVRALVPRA--EIVTR--PRFSTLSHAGAK---KLSRIPPRSAIVAFSTEQVYAIAEM 193
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
+ + V+ GAL P+TR Q L+ Q E D LVA+DA+GMGLNL++ V F L
Sbjct: 194 LRRFRGG-AAVVMGALSPQTRNAQVALY--QSGEVDYLVATDAIGMGLNLDVEHVAFAGL 250
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
SK++G + + S++ QIAGRAGR
Sbjct: 251 SKFDGVRHRRLTTSEMAQIAGRAGR 275
>gi|393722943|ref|ZP_10342870.1| helicase domain-containing protein [Sphingomonas sp. PAMC 26605]
Length = 838
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 141/263 (53%), Gaps = 13/263 (4%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R G+ PLRLLA EV+D+V L +L+TG+EK +
Sbjct: 14 GPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKLKGESRVALITGEEKIVPKD 73
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVLD 417
+ CT E + D+ +DE Q+ +D RG+ +T R L +E L G S+
Sbjct: 74 ARWFLCTAESMPLDKDLAFVALDEAQLGADPERGHVFTDRILRARGREETMLLGSESLRP 133
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
+++ + G E+ + RF L + L RS +VAFS E++ V +
Sbjct: 134 MLKALVP--GIEIINR--PRFSTLSYAGAKKISRLPK-RS--AIVAFSAEEVYAVAEML- 185
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ V+ GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F SL+K
Sbjct: 186 RRLRGGAAVVMGALSPRTRNAQVAMF--QAGEVDYLVATDAIGMGLNMDVAHVAFASLNK 243
Query: 538 YNGDKIIPVPGSQVKQIAGRAGR 560
++G + + +++ QIAGRAGR
Sbjct: 244 FDGHRQRRLRVAEMAQIAGRAGR 266
>gi|146337762|ref|YP_001202810.1| ATP-dependent RNA and DNA helicase/translation initiation factor 2
[Bradyrhizobium sp. ORS 278]
gi|146190568|emb|CAL74570.1| Conserved hypothetical protein; putative ATP-dependent RNA and DNA
helicase (N-terminal) and translation initiation factor
2 (IF-2; GTPase) (C-terminal) [Bradyrhizobium sp. ORS
278]
Length = 1170
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 142/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA EV++K+ + +G +L+TG+EK
Sbjct: 32 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSETVALITGEEKIKPK 91
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ TVE + D +DEIQ+ SD RG+ +T +L DE L G ++
Sbjct: 92 SPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMR 151
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 152 PIIERLLP--GASMVT------RPRLSQLE-FAGDRKITRQPRRTAIVAFSADEVYAIAE 202
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q+ + D LVA+DA+GMGLNL++ V F S
Sbjct: 203 LIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGDVDYLVATDAIGMGLNLDVDHVAFAS 259
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + S+ QIAGRAGR
Sbjct: 260 DRKYDGYQFRRLTPSEFAQIAGRAGR 285
>gi|405382540|ref|ZP_11036322.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397321041|gb|EJJ25467.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 1045
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 145/272 (53%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVT 70
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ +++++ G + E+ R L+ + + L RS +VAFS E
Sbjct: 131 LLGAATMRPILQQLLP--GITVTER--PRLSHLLYAGQKKITRLPQ-RS--AIVAFSADE 183
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ + D E+ LVA+DA+GMGLNL++
Sbjct: 184 VYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQEGDVEY--LVATDAIGMGLNLDVD 240
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + ++ QIAGRAGR
Sbjct: 241 HVAFAQDRKFDGYQFRNLNPGELGQIAGRAGR 272
>gi|359408185|ref|ZP_09200657.1| superfamily II RNA helicase [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356676942|gb|EHI49291.1| superfamily II RNA helicase [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 916
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 139/263 (52%), Gaps = 13/263 (4%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVPF 358
GPTN+GKT+ A+ R + G+ PLRLLA E +DK+ A LG +L+TG+EK +
Sbjct: 15 GPTNTGKTFYAMDRMLGYSSGMAGFPLRLLARENYDKLVARLGPGQVALITGEEKIIPAN 74
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLD 417
+ + CTVE + + D V+DEIQ+ D RG+ +T LL E L G ++
Sbjct: 75 ARYFCCTVEAMPLERSVDCLVVDEIQLCGDRERGHIFTDRLLHARGRHETLLLGAHTMRP 134
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE 477
++ + E + + + R + KT ++ +VAFS E++ + +
Sbjct: 135 LLETLLPE-AEFISRDRFSRLS-YAGQKKTT-----RLQRRSAIVAFSASEVYRLAELVR 187
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ V+ GAL P TR Q L+ Q+ + D L+A+DA+GMGLN++I V K
Sbjct: 188 RQRGG-AAVVMGALSPRTRNAQVELY--QNGDVDFLIATDAIGMGLNMDIGHVALADDMK 244
Query: 538 YNGDKIIPVPGSQVKQIAGRAGR 560
++G + + S++ QIAGRAGR
Sbjct: 245 FDGQSMRRLAPSELAQIAGRAGR 267
>gi|209883220|ref|YP_002287077.1| helicase [Oligotropha carboxidovorans OM5]
gi|209871416|gb|ACI91212.1| helicase [Oligotropha carboxidovorans OM5]
Length = 1082
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 141/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV++K+ A +L+TG+EK P
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIVARAGAEQVALITGEEKIKPP 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + TVE + + +DEIQ+ +D RG+ +T +L DE L G ++
Sbjct: 62 NARYWVSTVEAMPRELDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMR 121
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + R + ++E GD + R +VAFS E++ +
Sbjct: 122 PLIERLLP--GANI----VTRPRLSLLE---FAGDRKITRQPRRTAIVAFSADEVYAIAE 172
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q + D LVA+DA+GMGLNL++ V F S
Sbjct: 173 LIRRQ-HGGAAVVLGSLSPRTRNAQVEMF--QSGDVDYLVATDAIGMGLNLDVDHVAFAS 229
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + ++ QIAGRAGR
Sbjct: 230 DYKYDGYQFRRLTPAEFAQIAGRAGR 255
>gi|418404547|ref|ZP_12978002.1| helicase domain-containing protein [Sinorhizobium meliloti
CCNWSX0020]
gi|359501510|gb|EHK74117.1| helicase domain-containing protein [Sinorhizobium meliloti
CCNWSX0020]
Length = 1024
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 155/303 (51%), Gaps = 13/303 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 130
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ + G + E+ R LV + L N RS +VAFS E++
Sbjct: 131 GAATMRPILEYLLP--GITVVER--PRMSQLVYAGSKKITRLPN-RS--AIVAFSADEVY 183
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 184 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 240
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F K++G + + +++ Q+AGRAGR G+T ++ D D + F+
Sbjct: 241 AFAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHRIESHEFD 300
Query: 591 VVK 593
V+
Sbjct: 301 PVR 303
>gi|337739683|ref|YP_004631411.1| helicase domain-containing protein [Oligotropha carboxidovorans
OM5]
gi|386028701|ref|YP_005949476.1| helicase domain-containing protein [Oligotropha carboxidovorans
OM4]
gi|336093769|gb|AEI01595.1| helicase domain protein [Oligotropha carboxidovorans OM4]
gi|336097347|gb|AEI05170.1| helicase domain protein [Oligotropha carboxidovorans OM5]
Length = 1104
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 141/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV++K+ A +L+TG+EK P
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIVARAGAEQVALITGEEKIKPP 83
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ + TVE + + +DEIQ+ +D RG+ +T +L DE L G ++
Sbjct: 84 NARYWVSTVEAMPRELDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMR 143
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + R + ++E GD + R +VAFS E++ +
Sbjct: 144 PLIERLLP--GANI----VTRPRLSLLE---FAGDRKITRQPRRTAIVAFSADEVYAIAE 194
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q + D LVA+DA+GMGLNL++ V F S
Sbjct: 195 LIRRQ-HGGAAVVLGSLSPRTRNAQVEMF--QSGDVDYLVATDAIGMGLNLDVDHVAFAS 251
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + ++ QIAGRAGR
Sbjct: 252 DYKYDGYQFRRLTPAEFAQIAGRAGR 277
>gi|337265871|ref|YP_004609926.1| helicase domain-containing protein [Mesorhizobium opportunistum
WSM2075]
gi|336026181|gb|AEH85832.1| helicase domain protein [Mesorhizobium opportunistum WSM2075]
Length = 1162
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 162/334 (48%), Gaps = 35/334 (10%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + + GI PLRLLA EV+ +V +G + +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHETGIIGLPLRLLAREVYTRVCEKVGAHKVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKIQPKGAKYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G ++ +++++ T L Y K L + +VAFS
Sbjct: 136 GAATMHGILQRLLKGVSVVTRPRLSHLAYAGSKKLTRLPRRT-----------AIVAFSA 184
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ + I + V+ GAL P TR Q LF Q + D LVA+DA+GMGLNL+
Sbjct: 185 DEVYAIAELIRRQQGG-AAVVLGALSPRTRNAQVALF--QSGDVDYLVATDAIGMGLNLD 241
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-LTTTLNLDDLDYLIECL 585
+ V F K++G + + +++ QIAGRAGR DG T +D LD
Sbjct: 242 LDHVAFAQNRKFDGYQYRNLTAAELGQIAGRAGRH---LRDGTFGVTGQVDPLDE----- 293
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
E+VKK+ F+ V++ + + + F L
Sbjct: 294 ----ELVKKIEGHD-FDPVKVLQWRTARFDFASL 322
>gi|398824869|ref|ZP_10583186.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
gi|398224449|gb|EJN10754.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
Length = 1141
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 147/293 (50%), Gaps = 28/293 (9%)
Query: 282 PHTWFPFA-------RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
P + PFA RV + GPTN+GKT+ A++R + G+ PLRLLA EV
Sbjct: 2 PFSSSPFASERALSGRVPGAGVTAVLGPTNTGKTHLAIERMLAHPSGLIGLPLRLLAREV 61
Query: 335 FDKVNA-LGVYC-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRG 392
++K+ A +G +L+TG+EK + TVE + D +DE+Q+ SD RG
Sbjct: 62 YNKIAARVGSEAVALVTGEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERG 121
Query: 393 YAWTRALLGLMA-DEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKT 447
+ +T +L DE L G ++ ++ ++ T L + + + + + +
Sbjct: 122 HVFTDRILNRRGRDETLLLGAATMRPIIERLLPGVSMITRPRLSQLEFAGDRKITRQPRR 181
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
+VAFS E++ + I K + V+ G+L P TR Q +F Q+
Sbjct: 182 T-----------AIVAFSADEVYAIAELI-KRQHGGAAVVLGSLSPRTRNAQVEMF--QN 227
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ D LVA+DAVGMGLNL++ V F S K++G + + S+ QIAGRAGR
Sbjct: 228 GDVDYLVATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFAQIAGRAGR 280
>gi|357025986|ref|ZP_09088096.1| helicase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
gi|355542135|gb|EHH11301.1| helicase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
Length = 1146
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 163/334 (48%), Gaps = 35/334 (10%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + + G+ PLRLLA EV+ +V +G + +L+TG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHESGVIGLPLRLLAREVYTRVCEKVGAHKVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 76 EKIQPVGARYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466
G ++ +++++ T L Y K L + +VAFS
Sbjct: 136 GAATMHGILQRLLKGVSVVTRPRLSHLAYAGSKKLTRLPRRT-----------AIVAFSA 184
Query: 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
E++ + I + V+ GAL P TR Q LF Q + D LVA+DA+GMGLNL+
Sbjct: 185 DEVYAIAELIRRQQGG-AAVVLGALSPRTRNAQVALF--QSGDVDYLVATDAIGMGLNLD 241
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-LTTTLNLDDLDYLIECL 585
+ V F K++G + + +++ QIAGRAGR DG T +D LD
Sbjct: 242 LDHVAFAQNRKFDGYQFRDLTSAELGQIAGRAGRH---LRDGTFGVTGQVDPLDE----- 293
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQL 619
E+VKK+ F+ V++ + +++ F L
Sbjct: 294 ----ELVKKIEGH-DFDPVKVLQWRTADFDFASL 322
>gi|217979370|ref|YP_002363517.1| helicase domain-containing protein [Methylocella silvestris BL2]
gi|217504746|gb|ACK52155.1| helicase domain protein [Methylocella silvestris BL2]
Length = 1139
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 143/265 (53%), Gaps = 17/265 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + G+ PLRLLA EV+++V +G +L+TG+EK
Sbjct: 24 GPTNTGKTHYAIERMLSHPSGMIGLPLRLLAREVYNRVVEKIGAGAVALITGEEKIKPKG 83
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLD 417
+ + TVE + D D +DEIQ+ +D RG+ +T LL E L G ++
Sbjct: 84 ARYFVSTVEAMPRDLDLDFVAVDEIQLAADLDRGHVFTDRLLHHRGRSETLLIGAATMHR 143
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFEVKMA 475
+VR++ + +ER + + + G+ + R +VAFS +++ +
Sbjct: 144 LVRELLPGV------RIFERPR---LSKLSFAGERKMTRLPRRSAIVAFSAEDVYAIAEW 194
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
I + V+ GAL P TR Q ++F Q+ + D +VA+DAVGMGLNL++ + F S
Sbjct: 195 IRRQRGG-AAVVLGALSPRTRNAQVDMF--QNGDVDYIVATDAVGMGLNLDVEHIAFASD 251
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + ++ QIAGRAGR
Sbjct: 252 RKFDGWQFRRLTPAEFGQIAGRAGR 276
>gi|365893045|ref|ZP_09431251.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365330803|emb|CCE03782.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 1142
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 142/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVYC-SLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA EV++K+ + +G +L+TG+EK
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSEAVALITGEEKIKPR 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ TVE + D +DEIQ+ SD RG+ +T +L DE L G ++
Sbjct: 62 NPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMR 121
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 122 PIIERLLP--GASMVT------RPRLSQLE-FAGDRKITRQPRRTAIVAFSADEVYAIAE 172
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q+ + D LVA+DA+GMGLNL++ V F S
Sbjct: 173 LIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGDVDYLVATDAIGMGLNLDVDHVAFAS 229
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + S+ QIAGRAGR
Sbjct: 230 DRKYDGYQFRRLTPSEFAQIAGRAGR 255
>gi|27375270|ref|NP_766799.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
gi|27348406|dbj|BAC45424.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
Length = 1123
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 21/286 (7%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NA 340
P + F R + GPTN+GKT+ A++R + G+ PLRLLA EV++K+ +
Sbjct: 4 PPSPFASERAPGAGVTAVLGPTNTGKTHLAIERMLAHPSGMIGLPLRLLAREVYNKIADR 63
Query: 341 LGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRAL 399
GV +L+TG+EK + TVE + D +DE+Q+ SD RG+ +T +
Sbjct: 64 KGVESVALITGEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTDRI 123
Query: 400 LGLMA-DEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRN 454
L DE L G ++ ++ ++ T L + + + + + +
Sbjct: 124 LNRRGRDETLLLGAATMRPIIERLLPGVSMITRPRLSQLEFAGDRKITRQPRRT------ 177
Query: 455 VRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514
+VAFS E++ + I + + V+ G+L P TR Q ++F Q+ + D LV
Sbjct: 178 -----AIVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVSMF--QNGDVDYLV 229
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
A+DAVGMGLNL++ V F S K++G + + S+ QIAGRAGR
Sbjct: 230 ATDAVGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFAQIAGRAGR 275
>gi|407778467|ref|ZP_11125731.1| helicase-like protein [Nitratireductor pacificus pht-3B]
gi|407299838|gb|EKF18966.1| helicase-like protein [Nitratireductor pacificus pht-3B]
Length = 1028
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + + G+ PLRLLA EV+ +V A +G +L+TG+
Sbjct: 16 RDVTAILGPTNTGKTHLAIERMVAHQSGVIGLPLRLLAREVYGRVAAKVGEQNVALITGE 75
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + + CTVE + + IDE+Q+ +D RG+ +T +L L E L
Sbjct: 76 EKISPPGARYSVCTVEAMPRETDAAFVAIDEVQLAADLERGHIFTDRILHLRGRQETLLL 135
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ L R L + L RS +VAFS E++
Sbjct: 136 GAGTMRGILERLLPG----LSVITRPRMSVLTYAGSRKITRLPR-RS--AIVAFSSDEVY 188
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V
Sbjct: 189 AIGELIRRQRGG-VAVVLGALSPRTRNAQVALY--QSGDVDYLVATDAIGMGLNLDVDHV 245
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ QIAGRAGR
Sbjct: 246 AFAQNRKFDGFQYRDLNPAELGQIAGRAGR 275
>gi|398384532|ref|ZP_10542562.1| superfamily II RNA helicase [Sphingobium sp. AP49]
gi|397722691|gb|EJK83227.1| superfamily II RNA helicase [Sphingobium sp. AP49]
Length = 996
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 154/319 (48%), Gaps = 40/319 (12%)
Query: 288 FARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYC 345
A+ + + GPTN+GKT+ A++R G+ PLRLLA EV+D+V A+
Sbjct: 18 MAQFARSPVTAVLGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGANQV 77
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVS----------------------TDEMYDVA--VID 381
+L+TG+EK + P + + CT E + T + D A +D
Sbjct: 78 ALITGEEKIVPPGARYFLCTAESMPISGVGRQAGADTRNAGRETAAMTGGLSDFAFVALD 137
Query: 382 EIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
E Q+ +D RG+ +T R L +E + G S+ V+ + + + RF
Sbjct: 138 EAQLGADPERGHIFTDRILRARGREETMILGSASIARTVKSLVPD----IEIIGRPRFST 193
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500
L L L RS +VAFS E++ V + + V+ GAL P TR Q
Sbjct: 194 LSYAGAKKLSRLPR-RS--AIVAFSAEEVYAVAEMLRRFRGG-AAVVMGALSPRTRNAQV 249
Query: 501 NLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+F + E D LVA+DA+GMGLNL++ V F SL K++G + + +++ QIAGRAGR
Sbjct: 250 QMF--LNGEVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLTVAEMAQIAGRAGR 307
Query: 561 RGSIYPDGLTTTLNLDDLD 579
+ DG +L +D D
Sbjct: 308 H---HKDGTFGSLGSEDGD 323
>gi|90422069|ref|YP_530439.1| helicase-like protein [Rhodopseudomonas palustris BisB18]
gi|90104083|gb|ABD86120.1| helicase-like [Rhodopseudomonas palustris BisB18]
Length = 1169
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 140/266 (52%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV++K+ A +L+TG+EK P
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGVIGLPLRLLAREVYNKIVDRAGPDAVALITGEEKIKPP 83
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ TVE + D +DEIQ+ +D RG+ +T +L DE L G ++
Sbjct: 84 KPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILHRRGRDETLLLGAATMR 143
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 144 PIIERLLP--GASIVT------RPRLSQLE-FAGDRKITRQPRRTAIVAFSADEVYAIAE 194
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q ++ Q + D LVA+DAVGMGLNL++ V F S
Sbjct: 195 LIRRQ-HGGAAVVLGSLSPRTRNAQVAMY--QSGDVDYLVATDAVGMGLNLDVDHVAFAS 251
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + S+ QIAGRAGR
Sbjct: 252 DRKYDGYQFRRLNPSEFAQIAGRAGR 277
>gi|158421854|ref|YP_001523146.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158328743|dbj|BAF86228.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 1218
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 153/302 (50%), Gaps = 21/302 (6%)
Query: 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKG 321
E PD R D+TK P R R + GPTN+GKT+ A++R + + G
Sbjct: 125 ELPDPADRM------DDVTKLAVLPPSIRA--RGVTAVLGPTNTGKTHLAIERMLGHESG 176
Query: 322 IYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAV 379
+ PLRLLA EV+ +V +G +L+TG+EK + TVE + D
Sbjct: 177 LIGLPLRLLAREVYQRVVERVGAKNVALITGEEKIKPKNPRYWVATVEAMPRDVDVAFVA 236
Query: 380 IDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
IDE+Q+ +D RG+ +T LL E L G ++ +++K+ G + E+ R
Sbjct: 237 IDEVQLATDLDRGHVFTNRLLNRRGRFETMLLGSATMRPLIQKLMP--GVTMVER--PRL 292
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
L+ + + L RS +VAFS E++ + I + V+ GAL P TR
Sbjct: 293 STLMFAGEKKISRLPR-RS--AIVAFSAEEVYSIAEFIRRQRGG-AAVVMGALSPRTRNA 348
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRA 558
Q L+ Q+ + D L+A+DA+GMGLNL++ V F S K++G + + ++ QIAGRA
Sbjct: 349 QVELY--QNGDVDYLIATDAIGMGLNLDVDHVAFASDRKFDGWQFRRLNPMEMAQIAGRA 406
Query: 559 GR 560
GR
Sbjct: 407 GR 408
>gi|334317959|ref|YP_004550578.1| helicase domain-containing protein [Sinorhizobium meliloti AK83]
gi|334096953|gb|AEG54964.1| helicase domain protein [Sinorhizobium meliloti AK83]
Length = 1023
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 156/303 (51%), Gaps = 13/303 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 65
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T +L L E+ L
Sbjct: 66 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGEMLLL 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ + G + E+ R L+ + L N RS +VAFS E++
Sbjct: 126 GAATMRPILEYLLP--GITVVER--PRMSQLLYAGSKKITRLPN-RS--AIVAFSADEVY 178
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 179 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 235
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F K++G + + +++ Q+AGRAGR G+T ++ D D + F+
Sbjct: 236 AFAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHRIESHEFD 295
Query: 591 VVK 593
V+
Sbjct: 296 PVR 298
>gi|182677076|ref|YP_001831222.1| helicase domain-containing protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182632959|gb|ACB93733.1| helicase domain protein [Beijerinckia indica subsp. indica ATCC
9039]
Length = 1142
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 156/313 (49%), Gaps = 26/313 (8%)
Query: 286 FPFARVMKRK----IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--- 338
FP R+ +++ + GPTN+GKT++A++R + G+ PLRLLA EV+ +V
Sbjct: 5 FPATRLHRQERAKGVSILLGPTNTGKTHHAIERMLAHPSGMIGLPLRLLAREVYHRVVEK 64
Query: 339 NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRA 398
LG +L+TG+EK + + TVE + D IDEIQ+ SD RG+ +T
Sbjct: 65 AGLGA-VALITGEEKIKPATARYWISTVEAMPRDLDLSFVAIDEIQLASDLDRGHVFTDR 123
Query: 399 LLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
LL DE L G ++ ++ +E H R L + + L RS
Sbjct: 124 LLNRRGRDETLLIGAATM----QRALAELLPGAHFLARPRLSKLSFAGEKKMARLPR-RS 178
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
+VAFS E++ + I + V+ GAL P TR Q ++ Q+ E D +VA+D
Sbjct: 179 --AIVAFSAEEVYAIAEWIRRQRGG-AAVVLGALSPRTRNAQVEMY--QNGEVDYIVATD 233
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR---GSIYPDGLTTTLN 574
A+GMGLNL++ + F + K++G + ++ QIAGRAGR G+ G +
Sbjct: 234 AIGMGLNLDVDHIAFAADRKFDGWHYRRLTPAEFGQIAGRAGRHLRDGTFGTTGRCAPFD 293
Query: 575 LDDLDYLIECLKQ 587
D LIE L++
Sbjct: 294 ED----LIEALEE 302
>gi|284990781|ref|YP_003409335.1| helicase domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284064026|gb|ADB74964.1| helicase domain protein [Geodermatophilus obscurus DSM 43160]
Length = 550
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 141/269 (52%), Gaps = 12/269 (4%)
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEK 353
++++H GPTNSGKT++AL +A G Y +PLR LA E + +++A L L+ E+
Sbjct: 8 RVVFHLGPTNSGKTHDALAALADAGAGTYAAPLRQLAHEAYARLSAQLPPGTVGLSTGEE 67
Query: 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413
++ P + + CTVE + V+DE ++D RG+ W R LL E+ +
Sbjct: 68 QVDPTAPVLCCTVE--KAPPRGGLLVLDEAHWVTDPDRGHTWARLLLTGEYREVRVISAA 125
Query: 414 SVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR--NVRSGDCVVAFSRREIFE 471
L V+ + ++ ++ H+ R L V L +R VR VVAFSR+ ++
Sbjct: 126 EALPVLEPLVADV-ADVEVVHHGRLSRLDV----LRAPVRPSGVRPRTLVVAFSRKAVYA 180
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+E V+YGALPP TRRQ + F E DVLV +D +G G+N+ V+
Sbjct: 181 TAAVLEAVRPGRTGVLYGALPPATRRQVIDRFT--RGELDVLVTTDVIGHGINVPAATVL 238
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F +K++G + P+ + QIAGRAGR
Sbjct: 239 FAETTKFDGVERRPLRTWETAQIAGRAGR 267
>gi|421589710|ref|ZP_16034815.1| hypothetical protein RCCGEPOP_12715, partial [Rhizobium sp. Pop5]
gi|403705278|gb|EJZ20914.1| hypothetical protein RCCGEPOP_12715, partial [Rhizobium sp. Pop5]
Length = 701
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 144/272 (52%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVT 70
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + CTVE + + IDE+Q+ D RG+ +T +L L DE
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGRDETL 130
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ +++++ G + E+ R L + + L RS +VAFS E
Sbjct: 131 LLGAATMRPILQQLLP--GITVVER--PRLSHLFYGGQKKITRLPQ-RS--AIVAFSADE 183
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 184 VYAIAELIRRQRGG-AAVVLGALSPRTRNSQVALYQAGDVEY--LVATDAIGMGLNLDVD 240
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + +++ QIAGRAGR
Sbjct: 241 HVAFAQDRKFDGYQFRNLNPAELGQIAGRAGR 272
>gi|456358523|dbj|BAM92968.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 1161
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 142/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVYC-SLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA EV++K+ + +G +L+TG+EK
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSEAVALITGEEKIKPK 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ TVE + D +DEIQ+ SD RG+ +T +L DE L G ++
Sbjct: 62 NPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAATMR 121
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
++ ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 122 PMIERLLP--GASMVT------RPRLSQLE-FAGDRKITRQPRRTAIVAFSADEVYAIAE 172
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q+ + D LVA+DA+GMGLNL++ V F S
Sbjct: 173 LIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGDVDYLVATDAIGMGLNLDVDHVAFAS 229
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + S+ QIAGRAGR
Sbjct: 230 DRKYDGYQFRRLTPSEFAQIAGRAGR 255
>gi|87198147|ref|YP_495404.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
gi|87133828|gb|ABD24570.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
Length = 855
Score = 129 bits (323), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 138/264 (52%), Gaps = 15/264 (5%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R G PLRLLA EV+D+V A+ +L+TG+E+
Sbjct: 30 GPTNTGKTHLAIERLCAHSSGAIGFPLRLLAREVYDRVCAIKGADNVALITGEERIEPKG 89
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLD 417
+ CTVE + + +DE Q+ +D RG+ +T L+ +E L G ++
Sbjct: 90 ARWHLCTVEAMPSRPDLAFVALDEAQLSADPERGHVFTDRLMHTRGREETMLLGSSTLEP 149
Query: 418 VVRKICSETGDELHEQHYERFKPLV-VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
+V+ + E RF L V AK L + +VAFS +++ V +
Sbjct: 150 MVKALVPEA----EVVTRPRFSTLTHVGAKKL----SRIPPRSAIVAFSAEQVY-VMAEM 200
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P+TR Q ++ Q E D LVA+DA+GMGLNL++ V F LS
Sbjct: 201 LRRFRGGAAVVMGALSPQTRNAQVAMY--QAGEVDYLVATDAIGMGLNLDVHHVAFAGLS 258
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + +++ QIAGRAGR
Sbjct: 259 KFDGHRQRRLTTAEMAQIAGRAGR 282
>gi|378827873|ref|YP_005190605.1| ATP-dependent DNA or RNA helicase [Sinorhizobium fredii HH103]
gi|365180925|emb|CCE97780.1| ATP-dependent DNA or RNA helicase [Sinorhizobium fredii HH103]
Length = 1007
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 144/270 (53%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T LL L E L
Sbjct: 71 EKITPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRLLHLRGRGETLLL 130
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ G + E+ R L+ + L + RS +VAFS E++
Sbjct: 131 GAATMRPILEQLLP--GITVVER--PRMSQLLYAGSKKITRLPH-RS--AIVAFSADEVY 183
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 184 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 240
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ Q+AGRAGR
Sbjct: 241 AFAQDRKFDGYQYRNLNPAELAQVAGRAGR 270
>gi|154246580|ref|YP_001417538.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
gi|154160665|gb|ABS67881.1| helicase domain protein [Xanthobacter autotrophicus Py2]
Length = 1101
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 140/280 (50%), Gaps = 14/280 (5%)
Query: 285 WFPFAR-VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALG 342
W R V R + GPTN+GKT+ A++R + GI PLRLLA EV+ + V +G
Sbjct: 7 WAVLPRNVRARGVSAVLGPTNTGKTHLAIERMLGHDSGIIGLPLRLLAREVYQRIVERVG 66
Query: 343 V-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLG 401
+L+TG+EK + TVE + D IDEIQ+ +D RG+ +T +L
Sbjct: 67 ADKVALVTGEEKIKPKSPRYWVSTVEAMPRDLDVSFVAIDEIQLATDLDRGHVFTERMLN 126
Query: 402 LMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460
E L G ++ ++ K+ + R L + + L RS
Sbjct: 127 RRGRHETLLLGSATMRPLIEKLLPGVNVVVRP----RLSTLTFAGEKKISRLPR-RS--A 179
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+VAFS E++ + I + V+ GAL P TR Q L+ Q + D LVA+DA+G
Sbjct: 180 IVAFSAEEVYSIAEFIRRQRGG-AAVVMGALSPRTRNAQVELY--QSGDVDYLVATDAIG 236
Query: 521 MGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
MGLNL++ V F S K++G + + S++ QIAGRAGR
Sbjct: 237 MGLNLDVDHVAFASDRKFDGWQFRKLNASEMAQIAGRAGR 276
>gi|384537799|ref|YP_005721884.1| ATP-dependent RNA helicase [Sinorhizobium meliloti SM11]
gi|336034691|gb|AEH80623.1| ATP-dependent RNA helicase [Sinorhizobium meliloti SM11]
Length = 1028
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 155/303 (51%), Gaps = 13/303 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 130
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ + G + E+ R L+ + L N RS +VAFS E++
Sbjct: 131 GAATMRPILEYLLP--GITVVER--PRMSQLLYAGSKKITRLPN-RS--AIVAFSADEVY 183
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 184 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 240
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F K++G + + +++ Q+AGRAGR G+T ++ D D + F+
Sbjct: 241 AFAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHRIESHEFD 300
Query: 591 VVK 593
V+
Sbjct: 301 PVR 303
>gi|384531084|ref|YP_005715172.1| helicase domain-containing protein [Sinorhizobium meliloti BL225C]
gi|407722270|ref|YP_006841932.1| hypothetical protein BN406_03061 [Sinorhizobium meliloti Rm41]
gi|433615036|ref|YP_007191834.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|333813260|gb|AEG05929.1| helicase domain protein [Sinorhizobium meliloti BL225C]
gi|407320502|emb|CCM69106.1| hypothetical protein BN406_03061 [Sinorhizobium meliloti Rm41]
gi|429553226|gb|AGA08235.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 1023
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 155/303 (51%), Gaps = 13/303 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 65
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 66 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ + G + E+ R L+ + L N RS +VAFS E++
Sbjct: 126 GAATMRPILEYLLP--GITVVER--PRMSQLLYAGSKKITRLPN-RS--AIVAFSADEVY 178
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 179 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 235
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F K++G + + +++ Q+AGRAGR G+T ++ D D + F+
Sbjct: 236 AFAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHRIESHEFD 295
Query: 591 VVK 593
V+
Sbjct: 296 PVR 298
>gi|408376344|ref|ZP_11173949.1| ATP-dependent helicase [Agrobacterium albertimagni AOL15]
gi|407749811|gb|EKF61322.1| ATP-dependent helicase [Agrobacterium albertimagni AOL15]
Length = 1012
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA EV+ +V +G +L+TG+EK P
Sbjct: 12 LGPTNTGKTHFAIERMVAHGSGIIGLPLRLLAREVYTRVVERVGAQNVALVTGEEKISPP 71
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ CTVE + + IDEIQ+ D RG+ +T LL L +E L G ++
Sbjct: 72 KARFSVCTVEAMPRETKAAFVAIDEIQLAGDLERGHIFTDRLLHLRGREETLLLGSSTMK 131
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ ++ G + E+ R L + + L R+ +VAFS E++ + I
Sbjct: 132 SILIQLLP--GITIVER--PRLSQLFYAGQKKITRLPQ-RA--AIVAFSADEVYAIAELI 184
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q L+ + D E+ LVA+DA+GMGLNL++ V F
Sbjct: 185 RRQRGG-AAVVLGALSPRTRNAQVGLYQEGDVEY--LVATDAIGMGLNLDVDHVAFAQDR 241
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + ++ QIAGRAGR
Sbjct: 242 KFDGYQFRNLNPGELGQIAGRAGR 265
>gi|15967013|ref|NP_387366.1| hypothetical protein SMc03877 [Sinorhizobium meliloti 1021]
gi|15076286|emb|CAC47839.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
Length = 926
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 155/303 (51%), Gaps = 13/303 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T +L L E L
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 130
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ + G + E+ R L+ + L N RS +VAFS E++
Sbjct: 131 GAATMRPILEYLLP--GITVVER--PRMSQLLYAGSKKITRLPN-RS--AIVAFSADEVY 183
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 184 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 240
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F K++G + + +++ Q+AGRAGR G+T ++ D D + F+
Sbjct: 241 AFAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHRIESHEFD 300
Query: 591 VVK 593
V+
Sbjct: 301 PVR 303
>gi|116254344|ref|YP_770182.1| hypothetical protein RL4618 [Rhizobium leguminosarum bv. viciae
3841]
gi|115258992|emb|CAK10101.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 1090
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 143/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G + +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAHNVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E L
Sbjct: 73 EKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++++ G + E+ R L + + L RS +VAFS E++
Sbjct: 133 GAATMRPILQQLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ Q+AGRAGR
Sbjct: 243 AFAQDRKFDGYQFRNLNPGELGQVAGRAGR 272
>gi|424872858|ref|ZP_18296520.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393168559|gb|EJC68606.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 1082
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 143/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G + +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAHNVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E L
Sbjct: 73 EKISPPNARFSVCTVEAMPRETRAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++++ G + E+ R L + + L RS +VAFS E++
Sbjct: 133 GAATMRPILQQLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ Q+AGRAGR
Sbjct: 243 AFAQDRKFDGYQFRNLNPGELGQVAGRAGR 272
>gi|424916339|ref|ZP_18339703.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852515|gb|EJB05036.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 1110
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 36 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVT 93
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 94 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 153
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ +++++ G + E+ R L + + L RS +VAFS E
Sbjct: 154 LLGAATMQPILQQLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADE 206
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 207 VYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVD 263
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + ++ QIAGRAGR
Sbjct: 264 HVAFAQDRKFDGYQFRNLNPGELGQIAGRAGR 295
>gi|209551388|ref|YP_002283305.1| helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209537144|gb|ACI57079.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 1087
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVT 70
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ +++++ G + E+ R L + + L RS +VAFS E
Sbjct: 131 LLGAATMQPILQQLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADE 183
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 184 VYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVD 240
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + ++ QIAGRAGR
Sbjct: 241 HVAFAQDRKFDGYQFRNLNPGELGQIAGRAGR 272
>gi|402489731|ref|ZP_10836524.1| helicase [Rhizobium sp. CCGE 510]
gi|401811070|gb|EJT03439.1| helicase [Rhizobium sp. CCGE 510]
Length = 1081
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 142/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +GV +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E L
Sbjct: 73 EKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ ++ G + E+ R L + + L RS +VAFS E++
Sbjct: 133 GAATMRPILLQLLP--GINIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNSQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ Q+AGRAGR
Sbjct: 243 AFAQDRKFDGYQFRNLNPGELGQVAGRAGR 272
>gi|328542021|ref|YP_004302130.1| helicase [Polymorphum gilvum SL003B-26A1]
gi|326411771|gb|ADZ68834.1| Helicase conserved C-terminal domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 1004
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 149/299 (49%), Gaps = 17/299 (5%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV+ ++ A +L+TG+EK +
Sbjct: 5 LGPTNTGKTHLAIERMIAQPSGLIGLPLRLLAREVYGRLVARAGEAAVALITGEEKIIPA 64
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
TVE + D + IDE+Q+ D RG+ +T +L L E L G +
Sbjct: 65 APRFWVSTVEAMPLDLDTEFVAIDEVQLAGDLERGHVFTNRILNLRGRSETLLLGAATAR 124
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ K+ L+ R L + L RS VVAFS E++ + I
Sbjct: 125 PLLEKLIPG----LNVVTRPRMSVLSYSGSKKISRL-PTRS--AVVAFSSGEVYAIAELI 177
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ G+L P TR Q LF Q+ + D LVA+DA+GMGLNL++ + F
Sbjct: 178 RRQRGG-AAVVLGSLSPRTRNAQVELF--QNGDVDYLVATDAIGMGLNLDVDHIAFAGNR 234
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN--LDDLDYLIECLKQPFEVVK 593
K++G + + +++ QIAGRAGR G+T ++ DDL IE + F+ +K
Sbjct: 235 KFDGYQYRALSPAEMGQIAGRAGRHTRDGSFGVTGRVDPLADDLVETIESHR--FDALK 291
>gi|384213900|ref|YP_005605063.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 6]
gi|354952796|dbj|BAL05475.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 6]
Length = 1126
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 144/283 (50%), Gaps = 23/283 (8%)
Query: 287 PFA--RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV 343
PFA R + GPTN+GKT+ A++R + G+ PLRLLA EV++K+ A +G
Sbjct: 7 PFASERAPGAGVTAVLGPTNTGKTHLAIERMLAHPSGLIGLPLRLLAREVYNKIAARVGS 66
Query: 344 YC-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGL 402
+L+TG+EK + TVE + D +DE+Q+ SD RG+ +T +L
Sbjct: 67 EAVALVTGEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTDRILNR 126
Query: 403 MA-DEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRS 457
DE L G ++ ++ ++ T L + + + + + +
Sbjct: 127 RGRDETLLLGAATMRPIIERLLPGVSMITRPRLSQLEFAGDRKITRQPRRT--------- 177
Query: 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517
+VAFS E++ + I + + V+ G+L P TR Q +F Q+ + D LVA+D
Sbjct: 178 --AIVAFSADEVYAIAELIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QNGDVDYLVATD 232
Query: 518 AVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
AVGMGLNL++ V F S K++G + + ++ QIAGRAGR
Sbjct: 233 AVGMGLNLDVDHVAFASDRKFDGYQFRRLTPAEFAQIAGRAGR 275
>gi|424897498|ref|ZP_18321072.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393181725|gb|EJC81764.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 1104
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 143/272 (52%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 36 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVT 93
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 94 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 153
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ +++++ G + E+ R L + + L RS +VAFS E
Sbjct: 154 LLGAATMQPILQQLLP--GITVVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADE 206
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 207 VYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVD 263
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + ++ QIAGRAGR
Sbjct: 264 HVAFAQDRKFDGYQFRNLNPGELGQIAGRAGR 295
>gi|85713778|ref|ZP_01044768.1| helicase [Nitrobacter sp. Nb-311A]
gi|85699682|gb|EAQ37549.1| helicase [Nitrobacter sp. Nb-311A]
Length = 1128
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 140/266 (52%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA E+++K V+ GV +L+TG+EK
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREIYNKIVDRAGVESVALVTGEEKIKPA 83
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVL 416
TVE + D IDEIQ+ +D RG+ +T R L DE L G ++
Sbjct: 84 RPRFWVSTVEAMPRDLDVSFLAIDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMR 143
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
+V ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 144 PIVERLLP--GASIVT------RPRLSQLE-FAGDRKITRQPRRTAIVAFSADEVYAIAE 194
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q +F Q + D LVA+DAVGMGLNL++ V F S
Sbjct: 195 LIRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QSGDVDYLVATDAVGMGLNLDVDHVAFAS 251
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + ++ QIAGRAGR
Sbjct: 252 DRKYDGYQFRRLNPAEFAQIAGRAGR 277
>gi|227823781|ref|YP_002827754.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
NGR234]
gi|227342783|gb|ACP27001.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
NGR234]
Length = 1008
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 143/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T LL L E L
Sbjct: 73 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRLLHLRGRGETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ + G + E+ R L+ + L + RS +VAFS E++
Sbjct: 133 GAATMRPILEHLLP--GITVVER--PRMSQLLYAGSKKITRLPH-RS--AIVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ Q+AGRAGR
Sbjct: 243 AFAQDRKFDGYQYRNLNPAELAQVAGRAGR 272
>gi|241206830|ref|YP_002977926.1| helicase domain-containing protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860720|gb|ACS58387.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 1082
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVT 70
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETRAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ +++++ G + E+ R L + + L RS +VAFS E
Sbjct: 131 LLGAATMRPILQQLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADE 183
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 184 VYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVD 240
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + ++ Q+AGRAGR
Sbjct: 241 HVAFAQDRKFDGYQFRNLNPGELGQVAGRAGR 272
>gi|398355534|ref|YP_006400998.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
USDA 257]
gi|390130860|gb|AFL54241.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
USDA 257]
Length = 999
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 143/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + + CTVE + + IDE+Q+ D RG+ +T LL L E L
Sbjct: 71 EKITPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRLLHLRGRGETLLL 130
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ + G + E+ R L+ + L + RS +VAFS E++
Sbjct: 131 GAATMRPILEYLLP--GITVVER--PRMSQLLYAGSKKITRLPH-RS--AIVAFSADEVY 183
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 184 AIGELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDVDHV 240
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + +++ Q+AGRAGR
Sbjct: 241 AFAQDRKFDGYQYRNLNPAELAQVAGRAGR 270
>gi|430005521|emb|CCF21322.1| putative ATP-dependent DNA helicase protein [Rhizobium sp.]
Length = 1003
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 142/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G +L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRVVEKVGTNAVALVTGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CTVE + + IDE+Q+ +D RG+ +T +L L +E L
Sbjct: 71 EKISPSNARFSVCTVEAMPRETNAAFVAIDEVQLAADLERGHIFTDRILHLRGREETLLL 130
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ +I G + E+ R L + + L RS +VAFS E++
Sbjct: 131 GAGTMRPILERILP--GITIVER--PRMSQLFYAGQKKITRLPQ-RS--AIVAFSADEVY 183
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ + D E+ LVA+DA+GMGLNL++ V
Sbjct: 184 AIAELIRRQRGG-AAVVLGALSPRTRNAQVGLYQEGDVEY--LVATDAIGMGLNLDVDHV 240
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 241 AFAQDRKFDGFQFRHLTPGEMGQIAGRAGR 270
>gi|197102134|ref|NP_001125539.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pongo abelii]
gi|55728390|emb|CAH90939.1| hypothetical protein [Pongo abelii]
Length = 341
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 91/136 (66%), Gaps = 17/136 (12%)
Query: 251 LFPIFVEFCIEEFP-----DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
LFP F+ + FP D++++ +DL P W+P AR M+RKII+H GPTNS
Sbjct: 158 LFPFFLRHAKQIFPVLDCKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNS 211
Query: 306 GKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF----SNH 361
GKTY+A+Q++ AK G+YC PL+LLA E+F+K NA GV C L+TG+E+ +V ++H
Sbjct: 212 GKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVIVQPNGKQASH 271
Query: 362 IACTVEM--VSTDEMY 375
++CTVEM V+T MY
Sbjct: 272 VSCTVEMCSVTTPCMY 287
>gi|254473008|ref|ZP_05086406.1| Helicase conserved C-terminal domain protein [Pseudovibrio sp.
JE062]
gi|211957729|gb|EEA92931.1| Helicase conserved C-terminal domain protein [Pseudovibrio sp.
JE062]
Length = 981
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 137/270 (50%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQ 351
R + GPTN+GKT+ A++R G+ PLRLLA EV+ + V G +L+TG+
Sbjct: 13 RSVTAILGPTNTGKTHLAIERMSAYSSGLIGLPLRLLAREVYGRLVEKKGPDLVALITGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + TVE + D D IDE+Q+ D RG+ +T +L L +E L
Sbjct: 73 EKIIPKTPRFWVSTVEAMPKDLDVDFVAIDEVQLAGDLERGHVFTDRILNLRGREETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ ++ K+ ++ R L + L RS +VAFS E++
Sbjct: 133 GSSTIRPLLEKLMPG----INVITRPRMSILTYAGSKKITRLPR-RS--AIVAFSSDEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ G+L P TR Q +LF Q+ + D L+A+DAVGMGLNL++ +
Sbjct: 186 AIAELIRRQRGG-AAVVLGSLSPRTRNAQVDLF--QNGDVDWLIATDAVGMGLNLDVDHI 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 243 AFAGHRKFDGYQYRQLTPAETGQIAGRAGR 272
>gi|424886868|ref|ZP_18310476.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393176219|gb|EJC76261.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 1104
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 141/272 (51%), Gaps = 17/272 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLT 349
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+T
Sbjct: 36 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVT 93
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIH 408
G+EK P + CTVE + + IDE+Q+ D RG+ +T +L L +E
Sbjct: 94 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 153
Query: 409 LCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRRE 468
L G ++ +++++ G + E+ R L + + L +VAFS E
Sbjct: 154 LLGAGTMQPILQQLLP--GITVVER--PRLSHLFYAGQKKITRLPQ---HSAIVAFSADE 206
Query: 469 IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR 528
++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++
Sbjct: 207 VYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVD 263
Query: 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + ++ QIAGRAGR
Sbjct: 264 HVAFAQDRKFDGYQFRNLNPGELGQIAGRAGR 295
>gi|150398309|ref|YP_001328776.1| helicase domain-containing protein [Sinorhizobium medicae WSM419]
gi|150029824|gb|ABR61941.1| helicase domain protein [Sinorhizobium medicae WSM419]
Length = 1026
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 138/273 (50%), Gaps = 19/273 (6%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +G + +L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCG 411
EK + + CTVE + + IDE+Q+ D RG+ +T +L HL G
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRVL-------HLRG 123
Query: 412 DPSVL----DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRR 467
L +R I + R L+ + L N RS +VAFS
Sbjct: 124 RGETLFLGAATMRPILEYLLPGITVVERPRMSQLLYAGSKKITRLPN-RS--AIVAFSAD 180
Query: 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527
E++ + I + V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL++
Sbjct: 181 EVYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALY--QEGDVDYLVATDAIGMGLNLDV 237
Query: 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
V F K++G + + +++ Q+AGRAGR
Sbjct: 238 DHVAFAQDRKFDGYQYRNLNPAELAQVAGRAGR 270
>gi|323135912|ref|ZP_08070995.1| helicase domain protein [Methylocystis sp. ATCC 49242]
gi|322399003|gb|EFY01522.1| helicase domain protein [Methylocystis sp. ATCC 49242]
Length = 1018
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 141/266 (53%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVP 357
GPTN+GKT++A++R + G+ PLRLLA EV+++V A +G +L+TG+EK
Sbjct: 20 LGPTNTGKTHHAIERMLSFPTGVIGLPLRLLAREVYNRVVAKVGSDAVALITGEEKIKPR 79
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ TVE + D D IDEIQ+ +D RG+ +T LL E L G ++
Sbjct: 80 APAYWISTVEAMPRDIEVDFLAIDEIQLAADLDRGHVFTDRLLRWRGRQETLLIGADTMA 139
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFEVKM 474
++ ++ G + + R L T GD + R +VAFS E++ +
Sbjct: 140 PLIGELFP--GAPIFSR--PRLSRL-----TFAGDRKISRLPPRTAIVAFSAEEVYAIAE 190
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I++ V+ GAL P TR Q LF Q + D ++A+DA+GMGLNL++ V F S
Sbjct: 191 WIKRQRGG-AAVVLGALSPRTRNAQVELF--QSGDVDYIIATDAIGMGLNLDVDYVAFAS 247
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + ++ QIAGRAGR
Sbjct: 248 DRKFDGWRYRRLTPAEFGQIAGRAGR 273
>gi|316931528|ref|YP_004106510.1| helicase domain-containing protein [Rhodopseudomonas palustris
DX-1]
gi|315599242|gb|ADU41777.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
Length = 1086
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 141/282 (50%), Gaps = 21/282 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV- 343
F R + GPTN+GKT+ A++R + G+ PLRLLA EV++K V+ +G
Sbjct: 9 FTNGRAPGAGVTAVLGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVDRVGPD 68
Query: 344 YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGL 402
+L+TG+EK + TVE + D +DEIQ+ +D RG+ +T R L
Sbjct: 69 AVALVTGEEKIKPSKPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILRRR 128
Query: 403 MADEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG 458
DE L G ++ ++ ++ T L + Y + L + +
Sbjct: 129 GRDETLLLGAATMRPMIERLLPGASIVTRPRLSQLEYAGDRKLTRQPRRT---------- 178
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
+VAFS E++ + I K + V+ G+L P TR Q +F Q + D L+A+DA
Sbjct: 179 -AIVAFSADEVYAIAELI-KRQHGGAAVVLGSLSPRTRNAQVAMF--QSGDVDYLIATDA 234
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
VGMGLNL++ V F S K++G + + S+ QIAGRAGR
Sbjct: 235 VGMGLNLDVDHVAFASDRKFDGYQFRRLTPSEFGQIAGRAGR 276
>gi|304394149|ref|ZP_07376072.1| putative helicase [Ahrensia sp. R2A130]
gi|303293589|gb|EFL87966.1| putative helicase [Ahrensia sp. R2A130]
Length = 1073
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 142/279 (50%), Gaps = 22/279 (7%)
Query: 289 ARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVYC-S 346
ARV R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +G +
Sbjct: 18 ARV-GRGVTAVLGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYSRVVERVGPEAVA 76
Query: 347 LLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD- 405
L+TG+EK + I TVE + D IDE+Q+ ++ RG+ +T LL L
Sbjct: 77 LVTGEEKIRPKGARFIVSTVEAMPPDVDVHFLAIDEVQIATNLDRGHTFTDRLLNLRGTH 136
Query: 406 EIHLCGD----PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461
E L G P++ ++ I T L + HY K + + RS +
Sbjct: 137 ETMLLGSAILRPALEALLPGINIVTRPRLSQLHYAGSKKITRLPR---------RS--AI 185
Query: 462 VAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM 521
VAFS E++ + I + V+ G+L P TR Q L+ Q + D LVA+DA+GM
Sbjct: 186 VAFSADEVYAIAELIRRQRGA-AAVVLGSLSPRTRNAQVELY--QSGDVDFLVATDAIGM 242
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
GLNL++ V F SK++G + ++ QIAGRAGR
Sbjct: 243 GLNLDVDHVAFAQDSKFDGYTHRRLKPAEFAQIAGRAGR 281
>gi|39933568|ref|NP_945844.1| MgpS ATP-dependent helicase [Rhodopseudomonas palustris CGA009]
gi|39647414|emb|CAE25935.1| possible MgpS, ATP-dependent helicase [Rhodopseudomonas palustris
CGA009]
Length = 1093
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 21/282 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY 344
F RV + GPTN+GKT+ A++R + G+ PLRLLA EV++K V+ +G
Sbjct: 9 FTADRVPGAGVTAVLGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVDKVGAN 68
Query: 345 C-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGL 402
+L+TG+EK + TVE + D +DEIQ+ +D RG+ +T R L
Sbjct: 69 AVALVTGEEKIKPSKPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILRRR 128
Query: 403 MADEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG 458
DE L G ++ +++++ T L + Y + L + +
Sbjct: 129 GRDETLLLGAATMRPMIQRLLPGASIVTRPRLSQLEYAGDRKLTRQPRRT---------- 178
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
+VAFS E++ + I K + V+ G+L P TR Q +F Q + D L+A+DA
Sbjct: 179 -AIVAFSADEVYAIAELI-KRQHGGAAVVLGSLSPRTRNAQVAMF--QSGDVDYLIATDA 234
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+GMGLNL++ V F S K++G + + ++ QI GRAGR
Sbjct: 235 IGMGLNLDVDHVAFASDRKFDGYQFRRLTPAEFAQIGGRAGR 276
>gi|254505193|ref|ZP_05117344.1| Helicase conserved C-terminal domain protein [Labrenzia alexandrii
DFL-11]
gi|222441264|gb|EEE47943.1| Helicase conserved C-terminal domain protein [Labrenzia alexandrii
DFL-11]
Length = 998
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 135/264 (51%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV+ ++ A +L+TG+EK +
Sbjct: 2 LGPTNTGKTHLAIERMLAQPSGLIGLPLRLLAREVYGRIAERAGTDAVALITGEEKIIPK 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
TVE + D + IDE+Q+ + RG+ +T +L L E L G +
Sbjct: 62 QPRFWVSTVEAMPLDLNTEFVAIDEVQLAGNLDRGHVFTDRILNLRGRSETLLLGSATAR 121
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ K+ L+ R L + L RS +VAFS E++ + +
Sbjct: 122 PLLEKLIPG----LNVVTRPRMSILSYAGSKKVSRL-PARS--AIVAFSSDEVYSIAELL 174
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ G+L P TR Q +LF Q+ + D LVA+DA+GMGLNL++ + F
Sbjct: 175 RRQRGG-AAVVLGSLSPRTRNAQVDLF--QNGDVDHLVATDAIGMGLNLDVHHIAFAGNR 231
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + S++ QIAGRAGR
Sbjct: 232 KYDGYQYRQLTPSEMGQIAGRAGR 255
>gi|192288922|ref|YP_001989527.1| helicase domain-containing protein [Rhodopseudomonas palustris
TIE-1]
gi|192282671|gb|ACE99051.1| helicase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 1093
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 21/282 (7%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY 344
F RV + GPTN+GKT+ A++R + G+ PLRLLA EV++K V+ +G
Sbjct: 9 FTADRVPGAGVTAVLGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVDKVGAN 68
Query: 345 C-SLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGL 402
+L+TG+EK + TVE + D +DEIQ+ +D RG+ +T R L
Sbjct: 69 AVALVTGEEKIKPSKPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILRRR 128
Query: 403 MADEIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG 458
DE L G ++ ++ ++ T L + Y + L + +
Sbjct: 129 GRDETLLLGAATMRPMIERLLPGASIVTRPRLSQLEYAGDRKLTRQPRRT---------- 178
Query: 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518
+VAFS E++ + I K + V+ G+L P TR Q +F Q + D L+A+DA
Sbjct: 179 -AIVAFSADEVYAIAELI-KRQHGGAAVVLGSLSPRTRNAQVAMF--QSGDVDYLIATDA 234
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+GMGLNL++ V F S K++G + + ++ QI GRAGR
Sbjct: 235 IGMGLNLDVDHVAFASDRKFDGYQFRRLTPAEFAQIGGRAGR 276
>gi|115522157|ref|YP_779068.1| helicase domain-containing protein [Rhodopseudomonas palustris
BisA53]
gi|115516104|gb|ABJ04088.1| helicase domain protein [Rhodopseudomonas palustris BisA53]
Length = 1116
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 17/266 (6%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA EV++K+ A +L+TG+EK
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRAGPESVALITGEEKIKPQ 83
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+ TVE + D +DEIQ+ +D RG+ +T +L DE L G ++
Sbjct: 84 KPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRMLHRRGRDETLLLGAATMR 143
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKM 474
+V ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 144 PIVERLLP--GASIVT------RPRMSQLE-FSGDRKITRQPRRTAIVAFSADEVYAIAE 194
Query: 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
I + + V+ G+L P TR Q ++ Q + D LVA+DAVGMGLNL++ V F S
Sbjct: 195 LIRRQ-HGGAAVVLGSLSPRTRNAQVAMY--QSGDVDYLVATDAVGMGLNLDVDHVAFAS 251
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + S+ QIAGRAGR
Sbjct: 252 DRKFDGYQFRRLNPSEFAQIAGRAGR 277
>gi|417102150|ref|ZP_11960644.1| putative ATP-dependent DNA helicase protein [Rhizobium etli
CNPAF512]
gi|327191766|gb|EGE58768.1| putative ATP-dependent DNA helicase protein [Rhizobium etli
CNPAF512]
Length = 1063
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +GV +L+TG+
Sbjct: 13 RGVTAMLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CTVE + + IDE+Q+ D RG+ +T +L L +E L
Sbjct: 73 EKISPANARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++ + G + E+ R L + + L RS +VAFS E++
Sbjct: 133 GAATMRPILQLLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 186 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 242
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 243 AFAQDRKFDGYQFRNLNPGELGQIAGRAGR 272
>gi|190893874|ref|YP_001980416.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
gi|190699153|gb|ACE93238.1| putative ATP-dependent DNA helicase protein [Rhizobium etli CIAT
652]
Length = 1056
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 141/270 (52%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ +V +GV +L+TG+
Sbjct: 6 RGVTAMLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 65
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CTVE + + IDE+Q+ D RG+ +T +L L +E L
Sbjct: 66 EKISPANARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 125
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++ + G + E+ R L + + L RS +VAFS E++
Sbjct: 126 GAATMRPILQLLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVAFSADEVY 178
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGLNL++ V
Sbjct: 179 AIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHV 235
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 236 AFAQDRKFDGYQFRNLNPGELGQIAGRAGR 265
>gi|86171475|ref|XP_966219.1| ATP dependent DEAD-box helicase, putative [Plasmodium falciparum
3D7]
gi|46361185|emb|CAG25049.1| ATP dependent DEAD-box helicase, putative [Plasmodium falciparum
3D7]
Length = 1137
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 95/146 (65%), Gaps = 5/146 (3%)
Query: 361 HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVR 420
H CT+EM ++ YD A++DEIQM+++ RG+AWT L+ L + +I+LCG ++D+++
Sbjct: 411 HTVCTIEMTPLNKEYDCAIVDEIQMINNESRGHAWTNVLMNLNSKDIYLCGSEYIIDLIK 470
Query: 421 KICSETGDELHEQHYERFKPL-VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKH 479
+ D+L + +ER L + E T L D V++GDC++ FSR I +K +EK+
Sbjct: 471 NLADILNDKLIIKKFERLGSLHLQEYNTTLED---VQTGDCIITFSRNNIMLLKRILEKY 527
Query: 480 TNHHCCVIYGALPPETRRQQANLFND 505
N VIYG+LPP+++++Q N+FN+
Sbjct: 528 -NKRVFVIYGSLPPDSKKKQINMFNE 552
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 9/84 (10%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSIY 565
+L+A+D +GMGLN+NI+R++FYSL KY+GD + + S+ QIAGRAGR SI
Sbjct: 642 ILIATDVIGMGLNINIKRIIFYSLKKYDGDILRYLTMSEFLQIAGRAGRFNPSCTNKSI- 700
Query: 566 PDGLTTTLNLDDLDYLIECLKQPF 589
G T ++LDD++ L K +
Sbjct: 701 --GYITCVHLDDINILKNIFKHKY 722
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE 352
R I + GP NSGKTY+A Q+ M +K G+YCSPLRLLA EV+ K+ + +LLTGQE
Sbjct: 257 RNIHLYVGPPNSGKTYHAFQKLMLSKNGLYCSPLRLLAWEVYSKLTRMNKKVNLLTGQE 315
>gi|92116125|ref|YP_575854.1| helicase-like protein [Nitrobacter hamburgensis X14]
gi|91799019|gb|ABE61394.1| helicase-like protein [Nitrobacter hamburgensis X14]
Length = 1140
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 138/265 (52%), Gaps = 17/265 (6%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + GI PLRLLA EV++K+ A +L+TG+EK
Sbjct: 25 GPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRAGPDSVALITGEEKIKPAR 84
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLD 417
TVE + D +DEIQ+ +D RG+ +T +L DE L G ++
Sbjct: 85 PRFWVSTVEAMPRDLDVSFLAVDEIQISADLERGHVFTDRILHRRGRDETLLLGAATMRP 144
Query: 418 VVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSG--DCVVAFSRREIFEVKMA 475
++ ++ G + +P + + + GD + R +VAFS E++ +
Sbjct: 145 IIERLLP--GASIV------TRPRLSQLE-FAGDRKITRQPRRTAIVAFSADEVYAIAEL 195
Query: 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL 535
I + + V+ G+L P TR Q +F Q + D LVA+DAVGMGLNL++ V F S
Sbjct: 196 IRRQ-HGGAAVVLGSLSPRTRNAQVAMF--QSGDVDYLVATDAVGMGLNLDVDHVAFASD 252
Query: 536 SKYNGDKIIPVPGSQVKQIAGRAGR 560
KY+G + + ++ Q+AGRAGR
Sbjct: 253 RKYDGYQFRRLTPAEFAQVAGRAGR 277
>gi|86747674|ref|YP_484170.1| helicase [Rhodopseudomonas palustris HaA2]
gi|86570702|gb|ABD05259.1| helicase [Rhodopseudomonas palustris HaA2]
Length = 1145
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 145/290 (50%), Gaps = 23/290 (7%)
Query: 280 TKPHTWFPFA--RVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK 337
+ P T PF R + GPTN+GKT+ A++R + G+ PLRLLA EV++K
Sbjct: 6 SAPFTNAPFTNDRAPGAGVTAVLGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNK 65
Query: 338 -VNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
V+ +G +L+TG+EK P + TVE + D +DE+Q+ +D RG+ +
Sbjct: 66 IVDRVGPDAVALVTGEEKIKPPKARFWVSTVEAMPRDLDVSFLAVDEVQIAADLERGHVF 125
Query: 396 TRALLGLMAD-EIHLCGDPSVLDVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLG 450
T LL E L G ++ ++ ++ T L + + + L + +
Sbjct: 126 TDRLLRRRGRDETLLLGAATMRPIIERLLPGASIVTRPRLSQLEFAGDRKLTRQPRRT-- 183
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
+VAFS E++ + I K + V+ G+L P TR Q +F Q +
Sbjct: 184 ---------AIVAFSADEVYAIAELI-KRQHGGAAVVLGSLSPRTRNAQVAMF--QSGDV 231
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
D LVA+DA+GMGLNL++ V F S K++G + + S+ QIAGRAGR
Sbjct: 232 DYLVATDAIGMGLNLDVDHVAFASDRKFDGYQFRRLNPSEFAQIAGRAGR 281
>gi|77462980|ref|YP_352484.1| ATP-dependent helicase, MgpS [Rhodobacter sphaeroides 2.4.1]
gi|77387398|gb|ABA78583.1| putative ATP-dependent helicase, MgpS [Rhodobacter sphaeroides
2.4.1]
Length = 930
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 129/247 (52%), Gaps = 17/247 (6%)
Query: 319 KKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYD 376
+ G+ PLRLLA EV+D++ A +L+TG+E+ + + + CTVE + + D
Sbjct: 5 RTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPERTQYWVCTVEAMPMEIGAD 64
Query: 377 VAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSVLDVVRKICSETGDELHEQ 433
+DEIQ+ D RG+ +T LL GL+ E G DV+R + +
Sbjct: 65 FVAVDEIQLCGDPERGHVFTDRLLRARGLV--ETMFLGS----DVMRGAIAALVPHVTFL 118
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
ERF L + + RS +V FS ++ + I + C V+ GAL P
Sbjct: 119 RRERFSTLSYAGSKKISRM-PPRS--AIVGFSVDNVYAIAELIRRQKGG-CAVVMGALSP 174
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQ 553
TR Q L+ Q+ + D LVA+DA+GMGLNL+IR V F S K++G ++ P+ ++ Q
Sbjct: 175 RTRNAQVALY--QNGDVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQ 232
Query: 554 IAGRAGR 560
IAGRAGR
Sbjct: 233 IAGRAGR 239
>gi|294084643|ref|YP_003551401.1| helicase domain-containing protein [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664216|gb|ADE39317.1| helicase domain protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 991
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 32/293 (10%)
Query: 288 FARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVY-C 345
AR + GPTN+GKT+ AL+R GI PLRLLA E +D++ A LG
Sbjct: 1 MARRSAENVTLVLGPTNTGKTHLALERMTGYASGIIGFPLRLLARENYDRLVARLGAAKV 60
Query: 346 SLLTGQEKKLVPFSNHIACTVEMVS---------------TDEMYDVAVIDEIQMMSDAC 390
L+TG+E+ + + +I TVE + D ++ +DEIQ+ D
Sbjct: 61 GLITGEERIIPASARYICATVESMPESLTLSALGDGAGELPDRRFEFVGVDEIQLAGDRE 120
Query: 391 RGYAWTRALL---GLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKT 447
RG+ +T ++ GL E G + ++R++ + + + +R L
Sbjct: 121 RGHVFTDRIIHARGLF--ETMFMGAETAAPLLRQLLPDAKID----YRQRMSKLSYSGPK 174
Query: 448 LLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
L L R+ VVAFS +++++ I + ++ G L P TR Q L+ Q+
Sbjct: 175 KLTRLPR-RA--AVVAFSAADVYQIAEFIRRQRGG-AAIVMGRLSPRTRNAQVELY--QN 228
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
E D L+A+DA+GMGLNL++ V + KY+G K+ + S++ QIAGRAGR
Sbjct: 229 GEVDFLIATDAIGMGLNLDLSHVSLAADVKYDGRKMRKLTASEMAQIAGRAGR 281
>gi|229365483|dbj|BAH57991.1| hypothetical protein [Acetobacter lovaniensis]
Length = 634
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 132/245 (53%), Gaps = 17/245 (6%)
Query: 321 GIYCSPLRLLAMEVFDKVNAL-GVY-CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVA 378
GI PLRLLA E ++++ L GV L+TG+EK + P + +CTVE + +D +
Sbjct: 7 GIIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPPQARWFSCTVEAMPSDRKVEFV 66
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
+DEIQ+ +D RG+ +T LL E G ++ +++ + + + +
Sbjct: 67 AVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAPLLKTLIRDIEIDTRPR---- 122
Query: 438 FKPLVVEAKTLLGDLRNVR--SGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
+ + T G +R R + +VAFS E++ + I + C V+ G L P T
Sbjct: 123 -----LSSLTYTGHMRLSRLPARTAIVAFSMAEVYAIAELIRRKRGG-CAVVMGQLSPRT 176
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R Q L+ Q+ E D LVA+DA+GMGLN++IR + F +++K++G + + ++ QIA
Sbjct: 177 RNAQVALY--QNREVDYLVATDAIGMGLNMDIRHIAFANITKFDGHRNRLLTPAEAAQIA 234
Query: 556 GRAGR 560
GRAGR
Sbjct: 235 GRAGR 239
>gi|58040347|ref|YP_192311.1| ATP-dependent DNA helicase [Gluconobacter oxydans 621H]
gi|58002761|gb|AAW61655.1| ATP-dependent DNA helicase [Gluconobacter oxydans 621H]
Length = 815
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 129/249 (51%), Gaps = 13/249 (5%)
Query: 315 FMEAKKGIYCSPLRLLAMEVFDKVNALG--VYCSLLTGQEKKLVPFSNHIACTVEMVSTD 372
M GI PLRLLA E ++++ + +L+TG+EK + P + +CTVE + D
Sbjct: 1 MMAHASGIIGFPLRLLARENYERLVKIKGERSVALITGEEKIVPPGARWFSCTVEAMPLD 60
Query: 373 EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLDVVRKICSETGDELH 431
+ IDEIQ+ SD RG+ +T LL E G ++ +++K+ G E+
Sbjct: 61 RKAEFVAIDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIRPLLQKLVP--GIEID 118
Query: 432 EQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGAL 491
+ R L T L L RS +VAFS E++ + I + C VI G L
Sbjct: 119 IR--TRLSSLASTGHTKLSRL-PPRS--AIVAFSMSEVYALAEVIRRRRGG-CAVIMGQL 172
Query: 492 PPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQV 551
P TR Q L+ Q+ E D LVA+DA+GMGLN+++ V LSK++G P+ ++
Sbjct: 173 SPRTRNAQVELY--QNREVDYLVATDAIGMGLNMDVDHVALAQLSKFDGTVPRPLFPQEI 230
Query: 552 KQIAGRAGR 560
QIAGRAGR
Sbjct: 231 AQIAGRAGR 239
>gi|91974763|ref|YP_567422.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
gi|91681219|gb|ABE37521.1| helicase-like [Rhodopseudomonas palustris BisB5]
Length = 1119
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 138/268 (51%), Gaps = 21/268 (7%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + G+ PLRLLA EV++K V+ +G +L+TG+EK P
Sbjct: 23 LGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVDRVGPDAVALVTGEEKIKPP 82
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVL 416
+ TVE + D +DE+Q+ +D RG+ +T LL E L G ++
Sbjct: 83 KARFWVSTVEAMPRDLDVSFLAVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATMR 142
Query: 417 DVVRKICSE----TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEV 472
++ ++ T L + + + L + + +VAFS E++ +
Sbjct: 143 PIIERLLPGASIVTRPRLSQLEFAGDRKLTRQPRRT-----------AIVAFSADEVYAI 191
Query: 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVF 532
I K + V+ G+L P TR Q +F Q + D LVA+DA+GMGLNL++ V F
Sbjct: 192 AELI-KRQHGGAAVVLGSLSPRTRNAQVAMF--QSGDVDYLVATDAIGMGLNLDVDHVAF 248
Query: 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
S K++G + + S+ QIAGRAGR
Sbjct: 249 ASDRKFDGYQFRRLNPSEFAQIAGRAGR 276
>gi|83952974|ref|ZP_00961701.1| helicase, putative [Roseovarius nubinhibens ISM]
gi|83835636|gb|EAP74938.1| helicase, putative [Roseovarius nubinhibens ISM]
Length = 953
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 128/243 (52%), Gaps = 13/243 (5%)
Query: 321 GIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVA 378
G+ PLRLLA EV++K+ AL +L+TG+E+ + P + + CTVE + D
Sbjct: 7 GVIGLPLRLLAREVYEKIVALRGPSVVALVTGEERIVPPRTKYWVCTVEAMPQGLGADFV 66
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
+DEIQ+ +D RG+ +T LL + E G ++ R + +E + ER
Sbjct: 67 AVDEIQLCADPERGHVFTDRLLHMRGQKETQFLGAATM----RGVIAELVPGVSFLTRER 122
Query: 438 FKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRR 497
L L + RS +V FS ++ + + + V+ GAL P TR
Sbjct: 123 LSQLAYTGPKKLAKMPG-RS--AIVGFSVDNVYAIAELLRRQKGG-AAVVMGALSPRTRN 178
Query: 498 QQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGR 557
Q L+ Q+ + D LVA+DA+GMGLNL++ V F SL+K++G ++ + +++ QIAGR
Sbjct: 179 AQVELY--QNGDVDYLVATDAIGMGLNLDVDHVAFSSLTKFDGRRMRMLAPNELAQIAGR 236
Query: 558 AGR 560
AGR
Sbjct: 237 AGR 239
>gi|296448356|ref|ZP_06890245.1| helicase domain protein [Methylosinus trichosporium OB3b]
gi|296254148|gb|EFH01286.1| helicase domain protein [Methylosinus trichosporium OB3b]
Length = 954
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV--NALGVYCSLLTGQEKKLVP 357
GPTN+GKT++A++R + G+ PLRLLA EV+ +V +L+TG+EK
Sbjct: 26 LGPTNTGKTHHAIERMLSYPSGMIGLPLRLLAREVYQRVAERVGAANVALVTGEEKIKPR 85
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
+++ TVE + D D +DEIQ+ +D RG+ +T L E L G ++
Sbjct: 86 AASYWISTVEAMPRDLDVDFVAVDEIQLAADLDRGHVFTDRLAYWRGRQETLLIGAETMR 145
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ ++ G + + R L + L L RS +VAFS +++ + I
Sbjct: 146 PLIERLLP--GAPIFTR--PRLSRLTFAGERKLARL-PPRS--AIVAFSVEDVYAIAEWI 198
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
++ V+ GAL P TR Q +L+ Q+ + D LVA+DA+GMGLNL++ + F +
Sbjct: 199 KRQRGG-AAVVLGALSPRTRNAQVDLY--QNGDVDYLVATDAIGMGLNLDVDHIAFAADR 255
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + ++ QIAGRAGR
Sbjct: 256 KFDGLRHRRLTPAEFGQIAGRAGR 279
>gi|402850589|ref|ZP_10898784.1| ATP-dependent DNA Helicase [Rhodovulum sp. PH10]
gi|402499194|gb|EJW10911.1| ATP-dependent DNA Helicase [Rhodovulum sp. PH10]
Length = 1147
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 137/264 (51%), Gaps = 13/264 (4%)
Query: 300 CGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKLVP 357
GPTN+GKT+ A++R + GI PLRLLA EV++KV + +G +L+TG+EK
Sbjct: 2 LGPTNTGKTHLAIERMLGHSSGIIGLPLRLLAREVYNKVVDRVGPDQVALITGEEKIKPQ 61
Query: 358 FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416
TVE + D +DE+Q+ +D RG+ +T +L +E + G +V
Sbjct: 62 NPRFWVSTVEAMPRDLDVAFVAVDEVQLGADFERGHVFTDRILNRRGREETLVLGAATVR 121
Query: 417 DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
++ K+ G + + R L + L R R +VAFS E++ + I
Sbjct: 122 PMIEKLLP--GANVISR--PRLSQLTFAGEKKLS--RQPRR-TAIVAFSAEEVYAIAELI 174
Query: 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLS 536
+ V+ GAL P TR Q L+ Q + D LVA+DA+GMGLNL++ V F S
Sbjct: 175 RRQRGG-AAVVLGALSPRTRNAQVALY--QSGDVDYLVATDAIGMGLNLDVDHVAFGSER 231
Query: 537 KYNGDKIIPVPGSQVKQIAGRAGR 560
K++G + + ++ QIAGRAGR
Sbjct: 232 KFDGYQYRRLTPAEFGQIAGRAGR 255
>gi|218194974|gb|EEC77401.1| hypothetical protein OsI_16163 [Oryza sativa Indica Group]
Length = 128
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 79/119 (66%), Gaps = 17/119 (14%)
Query: 697 MPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTN 756
MPKGSAKND ELLDLETKHQVLSMYLWLSH F+E+ FP+ +KAE M+ +IA+LL +SL
Sbjct: 1 MPKGSAKNDTELLDLETKHQVLSMYLWLSHHFEEDHFPHVQKAEEMSINIADLLAKSLAK 60
Query: 757 ANWKPESRQAGKPKLHQQR----------------EDGYDRPRSIIKSYENRKRQEKTS 799
A+WKP SRQ KP+ + EDGY+R S IK + RKR ++ S
Sbjct: 61 ASWKPTSRQQAKPRRENEEDNDVEQASDDNAKNDSEDGYERSISRIKPF-MRKRLDRPS 118
>gi|1103724|emb|CAA90562.1| MgpS [Rhodobacter sphaeroides]
Length = 930
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 17/247 (6%)
Query: 319 KKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYD 376
+ G+ PLRLLA EV+D++ A +L+TG+E+ + + + CTVE + + D
Sbjct: 5 RTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPERTQYWVCTVEAMPMEIGAD 64
Query: 377 VAVIDEIQMMSDACRGYAWTRALL---GLMADEIHLCGDPSVLDVVRKICSETGDELHEQ 433
+DEIQ+ D RG+ +T LL GL+ E G DV+R + +
Sbjct: 65 FVAVDEIQLCGDPERGHVFTDRLLRARGLV--ETMFLGS----DVMRGAIAALVPHVTFL 118
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
ERF L + + RS +V FS ++ + I + C V+ GAL P
Sbjct: 119 RRERFSTLSYAGSKKISRM-PPRS--AIVGFSVDNVYAIAELIRRQKGG-CAVVMGALSP 174
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQ 553
TR Q + Q+ + D LVA+DA+GMGLNL+IR V F S K++G ++ P+ ++ Q
Sbjct: 175 RTRNAQVAPY--QNGDVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQ 232
Query: 554 IAGRAGR 560
IAGRAGR
Sbjct: 233 IAGRAGR 239
>gi|298293649|ref|YP_003695588.1| helicase [Starkeya novella DSM 506]
gi|296930160|gb|ADH90969.1| helicase domain protein [Starkeya novella DSM 506]
Length = 1161
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 137/270 (50%), Gaps = 13/270 (4%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT A++R + G+ PLRLLA EV+ K V G + +L+TG+
Sbjct: 24 RGVTAVLGPTNTGKTSLAIERMLGHSSGLIGLPLRLLAREVYGKLVERAGEHNVALITGE 83
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
E+ + TVE + D +DEIQ+ +D RG+ +T +L L +E L
Sbjct: 84 ERIKPANPRYWVSTVEAMPRDLDVAFVALDEIQIAADLDRGHVFTDRMLNLRGREETLLL 143
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +V K+ + R L + + L RS +VAFS E++
Sbjct: 144 GAATMRPLVEKLLPG----VSILGRPRLSNLTFAGEKKITRLPR-RS--AIVAFSADEVY 196
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ I + V+ GAL P TR Q ++ Q+ + D LVA+DA+GMGLNL++ V
Sbjct: 197 AIAELIRRQRGG-AAVVLGALSPRTRNAQVAMY--QNGDVDYLVATDAIGMGLNLDVDHV 253
Query: 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
F K++G + + ++ QIAGRAGR
Sbjct: 254 AFAGDVKFDGWQFRKLNPGELAQIAGRAGR 283
>gi|149688694|gb|ABR27758.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
Length = 283
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 15/232 (6%)
Query: 333 EVFDKV--NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
EV+DK+ +L+TG+EK + P + + CTVE + ++ D IDEIQM +D
Sbjct: 1 EVYDKIIKKISSDKVALITGEEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHE 60
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+ +T LL L +++ + S ++KI ++ ++ + ER L T +G
Sbjct: 61 RGHIFTDRLLNLRGEKLTMFMGSST---IKKIVNKLNEDTEFINRERLSKL-----TYVG 112
Query: 451 --DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
+ + ++AFS E++ + + + ++ G+L P+TR Q L+ Q
Sbjct: 113 HKKISRINRKTAIIAFSTEEVYAIAELVRRQKGG-AAIVMGSLSPKTRNAQVELY--QSG 169
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ D LVA+DA+GMG+N+++ V F +L K++G K+ + S++ QIAGRAGR
Sbjct: 170 DVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGR 221
>gi|149688696|gb|ABR27759.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
Length = 283
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 17/233 (7%)
Query: 333 EVFDKV--NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
EV+DK+ +L+TG+EK + P + + CTVE + ++ D IDEIQM +D
Sbjct: 1 EVYDKIIKKISSDKVALITGEEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHE 60
Query: 391 RGYAWTRALLGLMADEIHL-CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+ +T LL L +++ + G ++ ++V K+ +T + ER L T +
Sbjct: 61 RGHIFTDRLLNLRGEKLTMFMGSSTIKNIVNKLNEDT----EFINRERLSKL-----TYV 111
Query: 450 G--DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
G + + ++AFS E++ + + + ++ G+L P+TR Q L+ Q
Sbjct: 112 GHKKISRINRKTAIIAFSTEEVYAIAELVRRQKGG-AAIVMGSLSPKTRNAQVELY--QS 168
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ D LVA+DA+GMG+N+++ V F +L K++G K+ + S++ QIAGRAGR
Sbjct: 169 GDVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGR 221
>gi|149688698|gb|ABR27760.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688700|gb|ABR27761.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688702|gb|ABR27762.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688704|gb|ABR27763.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688706|gb|ABR27764.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688708|gb|ABR27765.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688710|gb|ABR27766.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
Length = 283
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 17/233 (7%)
Query: 333 EVFDKV--NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
EV+DK+ +L+TG+EK + P + + CTVE + ++ D IDEIQM +D
Sbjct: 1 EVYDKIIKKISSDKVALITGEEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHE 60
Query: 391 RGYAWTRALLGLMADEIHL-CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+ +T LL L +++ + G ++ ++V K+ +T + ER L T +
Sbjct: 61 RGHIFTDRLLNLRGEKLTMFMGSSTIKNIVNKLNEDT----EFINRERLSKL-----TYV 111
Query: 450 G--DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
G + + ++AFS E++ + + + ++ G+L P+TR Q L+ Q
Sbjct: 112 GHKKISRINRKTAIIAFSTEEVYAIAELVRRQKGG-AAIVMGSLSPKTRNAQVELY--QS 168
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+ D LVA+DA+GMG+N+++ V F +L K++G K+ + S++ QIAGRAGR
Sbjct: 169 GDVDFLVATDAIGMGINMDLENVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGR 221
>gi|238567947|ref|XP_002386345.1| hypothetical protein MPER_15452 [Moniliophthora perniciosa FA553]
gi|215438015|gb|EEB87275.1| hypothetical protein MPER_15452 [Moniliophthora perniciosa FA553]
Length = 115
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Query: 368 MVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKIC-SET 426
M+ +D+AVIDEIQM+ D+ RGYAWT A+LG+ A EIHLCG+ + + V++ + T
Sbjct: 1 MLPPGARFDIAVIDEIQMIGDSSRGYAWTNAVLGICAPEIHLCGEETAVPVIQALLKGNT 60
Query: 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK 478
D L + YER PL V ++L G+L NV+ GDC+V FSRR IF+ K A+ K
Sbjct: 61 NDTLEIRRYERLSPLTVSTESLQGELANVKKGDCIVGFSRRGIFKNKKAVRK 112
>gi|323450513|gb|EGB06394.1| hypothetical protein AURANDRAFT_65725 [Aureococcus anophagefferens]
Length = 894
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 133/285 (46%), Gaps = 28/285 (9%)
Query: 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV--------FDKVNALGVYCSL 347
++ + GPTNSGKT+ AL G Y PLR LA EV +K + L
Sbjct: 75 VVCYLGPTNSGKTWRALDFLASRGDGCYAGPLRALAWEVRESMVERVAEKWGKIAPGVGL 134
Query: 348 LTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE- 406
TG+E + S + CT E+ D DV V+DE+ D RG+AWTR L+ +
Sbjct: 135 WTGEESEDADAS-VLCCTAEVAPAD--GDVLVLDEVHWCVDGWRGHAWTRLLMAAKSGRY 191
Query: 407 --IHLCGDPSVLDVVRKIC-SETGDELHE-QHYERFKPLVVEAKTLLGDLRN---VRSGD 459
+ +CG L ++ ++ + D E R L E +GDL + R +
Sbjct: 192 RHVRVCGPVEALPLLERVFEANVADGTFEVDRTARRSRLTFEGD--VGDLTSFLRARVAE 249
Query: 460 ----CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
VVAFSR + + A + VI+G LPPE RR Q L +D DV+V
Sbjct: 250 KRFVAVVAFSRSSVLALAAAAQAAGARAS-VIFGKLPPEARRSQ--LEAARDGTLDVIVC 306
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+D +G G+NL + VVF K++G + + Q+AGRAGR
Sbjct: 307 TDVIGHGINLPLDDVVFAETRKFDGTSKRDLDVWEAAQVAGRAGR 351
>gi|302804027|ref|XP_002983766.1| hypothetical protein SELMODRAFT_422950 [Selaginella moellendorffii]
gi|300148603|gb|EFJ15262.1| hypothetical protein SELMODRAFT_422950 [Selaginella moellendorffii]
Length = 595
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 108/373 (28%), Positives = 166/373 (44%), Gaps = 67/373 (17%)
Query: 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424
VE MY + V D+ + + + RG+ R L L+ DE + P+ LD +
Sbjct: 250 VVERRGKTLMYGLKVFDQEEELREG-RGFDTPR-LYELLVDEGKVVELPTRLDAANILSP 307
Query: 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEK-HTNHH 483
E E+ Y+ F + GD R+V V +F F IEK H +
Sbjct: 308 ELA-EVVSDDYDLF--------WITGD-RDVFEYSVVDSF-----FNKLRDIEKLHPAIN 352
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
C V+YG+LPPETR +QA FN D +F +LVASDA+GMGLNLNI+ +
Sbjct: 353 CSVVYGSLPPETRTKQAERFNKADEDFSILVASDAIGMGLNLNIQHHL------------ 400
Query: 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD---DLDYLIECLKQPFEVVKKVGLFPF 600
AG+ S+ P + N + I C + FP
Sbjct: 401 ---------HEAGQVRWHRSLLPQCHASEANCRPNWKIQVQISCCRS----------FPT 441
Query: 601 FEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRF 660
F+Q+ L+ N+ F +LEKF + LC + ML+ + L ++ RF
Sbjct: 442 FDQIGLYCSFYPNFPFSAILEKF-----IATVTVLCLQ------SRMLDDIP-LPMDSRF 489
Query: 661 NFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAK---NDAELLDLETKHQV 717
FC PV+ + M LL FA +Y+ N V + + + + +L +L++ H+V
Sbjct: 490 LFCTCPVDKDNGIIMGALLEFARNYAVNRNVPLKRLLTPATMRVPSTQKDLAELDSLHKV 549
Query: 718 LSMYLWLSHQFKE 730
L MY+WLS++ ++
Sbjct: 550 LDMYIWLSYRVED 562
>gi|385303195|gb|EIF47285.1| atp-dependent rna component of the mitochondrial degradosome along
with the rnase dss1p [Dekkera bruxellensis AWRI1499]
Length = 225
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Query: 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
+K+ IE+ TN C VIYGALPPETR Q+A FND +D++VASDA+GMGLNL I RV+
Sbjct: 1 MKIQIERQTNFKCAVIYGALPPETRSQEAQRFND--GIYDIVVASDAIGMGLNLKINRVI 58
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG-SIYPDGLTTTLNLDDLDYLIECLKQPFE 590
F + K+NG K + + S +KQI GRAGR G G T ++ D+L+ + + ++ +
Sbjct: 59 FTTTQKFNGSKNVSLTSSNIKQIGGRAGRYGIGGESVGHITAISRDELENVSKGVEGDIK 118
Query: 591 VVKKVGLFP 599
+ K L+P
Sbjct: 119 YINKAILWP 127
>gi|427427310|ref|ZP_18917354.1| ATP-dependent DNA helicase [Caenispirillum salinarum AK4]
gi|425883236|gb|EKV31912.1| ATP-dependent DNA helicase [Caenispirillum salinarum AK4]
Length = 821
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 125/252 (49%), Gaps = 21/252 (8%)
Query: 316 MEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQEKKLVPFSNHIACTVEMVSTDE 373
M G+ PLRLLA E +D+V A G + +L+TG+EK + P CTVE + D
Sbjct: 1 MGHATGMIGFPLRLLARENYDRVVKAKGPHRVALITGEEKIIPPNPAWWICTVESMPLDR 60
Query: 374 MYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVLDVVRKICS----ETGD 428
D +DEIQ+ +D RG+ +T R L E G ++ ++ K+ +T
Sbjct: 61 RVDFLAVDEIQLCADPDRGHIFTDRLLRARGMRETMFLGSETIKPLMYKLVPGCEFQTRP 120
Query: 429 ELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIY 488
L + Y K L R R +VAFS +++ + + + V+
Sbjct: 121 RLSQLKYAGPKKLT----------RLPRRA-AIVAFSAADVYAIAELVRRQRGG-AAVVL 168
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
GAL P TR Q +F Q E D LVA+DA+GMGLN+++ V F +L K++G +
Sbjct: 169 GALSPRTRNAQVAMF--QAGEVDHLVATDAIGMGLNMDVDHVAFAALRKFDGHSPRALTA 226
Query: 549 SQVKQIAGRAGR 560
+V QIAGRAGR
Sbjct: 227 PEVAQIAGRAGR 238
>gi|16124910|ref|NP_419474.1| photosynthesis protein modulator [Caulobacter crescentus CB15]
gi|13421872|gb|AAK22642.1| photosynthesis protein modulator [Caulobacter crescentus CB15]
Length = 824
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 13/243 (5%)
Query: 321 GIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVA 378
G+ PLRLLA E++D++ L +L+TG+EK + + + CTVE + +
Sbjct: 7 GMIGLPLRLLAREIYDRIVKLRGKAAVALITGEEKIVPARAAYFVCTVEAMPLGREVEFL 66
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
+DEIQ+ +D RG+ +T LL E G ++ +VR++ + E+ + ER
Sbjct: 67 AVDEIQLCADPERGHIFTHRLLHARGKFETMFLGAGTMAPLVRRLLPDA--EIVSR--ER 122
Query: 438 FKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRR 497
F L L L +VAFS ++ + I + V+ G+L P TR
Sbjct: 123 FSNLSYAGSKKLTRLPRR---TAIVAFSTDAVYAIAELIRRQRGG-AAVVMGSLSPRTRN 178
Query: 498 QQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGR 557
Q L+ Q E D LVA+DA+GMGLN+++ V F L K++G + + +V QIAGR
Sbjct: 179 AQVALY--QSGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRTRWLYPQEVGQIAGR 236
Query: 558 AGR 560
AGR
Sbjct: 237 AGR 239
>gi|170750104|ref|YP_001756364.1| helicase domain-containing protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656626|gb|ACB25681.1| helicase domain protein [Methylobacterium radiotolerans JCM 2831]
Length = 1081
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 125/243 (51%), Gaps = 13/243 (5%)
Query: 321 GIYCSPLRLLAMEVFDKVNA-LGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVA 378
G+ PLRLLA EV+ +V A +G +L+TG+EK + CT+E + D
Sbjct: 7 GMIGLPLRLLAREVYLRVVAKVGPEKVALVTGEEKIKPDRPRYWICTIEAMPRDLDVAFV 66
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
IDEIQ+ +D RG+ +T LL + +E L G ++L +V+ + +H R
Sbjct: 67 AIDEIQLAADMDRGHVFTDRLLYVRGREETLLIGSSTMLPLVQDLIPN----VHTTTRPR 122
Query: 438 FKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRR 497
L + L L +VAFS E++ + I + V+ GAL P TR
Sbjct: 123 LSQLTFAGEKRLSRLPRR---TAIVAFSAEEVYAIAELIRRQRGG-AAVVLGALSPRTRN 178
Query: 498 QQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGR 557
Q ++ Q + D LVA+DAVGMGLNL++ V F + KY+G + + +++ QIAGR
Sbjct: 179 AQVEMY--QAGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLTPAEMGQIAGR 236
Query: 558 AGR 560
AGR
Sbjct: 237 AGR 239
>gi|13473300|ref|NP_104867.1| MgpS, ATP-dependent helicase [Mesorhizobium loti MAFF303099]
gi|14024048|dbj|BAB50653.1| ATP-dependent helicase; MgpS [Mesorhizobium loti MAFF303099]
Length = 1092
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 35/307 (11%)
Query: 321 GIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVA 378
G+ PLRLLA EV+ +V +G + +L+TG+EK + + CTVE + +
Sbjct: 7 GVIGLPLRLLAREVYTRVCEKVGAHKVALITGEEKIQPAGAKYSVCTVEAMPRETDAAFV 66
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLDVVRKICSE----TGDELHEQ 433
IDE+Q+ D RG+ +T +L L E L G ++ +++++ T L
Sbjct: 67 AIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAATMHGILQRLLKGVSVVTRPRLSHL 126
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPP 493
Y K L + +VAFS E++ + I + V+ GAL P
Sbjct: 127 AYAGSKKLT-----------RLPRRTAIVAFSADEVYAIAELIRRQQGG-AAVVLGALSP 174
Query: 494 ETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQ 553
TR Q LF Q + D LVA+DA+GMGLNL++ V F K++G + + +++ Q
Sbjct: 175 RTRNAQVALF--QSGDVDYLVATDAIGMGLNLDLDHVAFAQNRKFDGYQYRNLTAAELGQ 232
Query: 554 IAGRAGRRGSIYPDG-LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLS 612
IAGRAGR DG T +D LD E+VKK+ F+ V++ + +
Sbjct: 233 IAGRAGRH---LRDGTFGVTGQVDPLDE---------ELVKKIESHD-FDPVKVLQWRTA 279
Query: 613 NYTFCQL 619
++ F L
Sbjct: 280 HFDFASL 286
>gi|385303196|gb|EIF47286.1| atp-dependent rna component of the mitochondrial degradosome along
with the rnase dss1p [Dekkera bruxellensis AWRI1499]
Length = 127
Score = 108 bits (270), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/122 (45%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 326 PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNH-----IACTVEMVSTDEMYDVAVI 380
PLRLLA EV+DK C+L+TG+E + N + T+EM+S E YDV V+
Sbjct: 4 PLRLLAREVYDKFQKKNXNCNLVTGEEVLIDIDGNGNKAGITSGTIEMLSMSESYDVVVV 63
Query: 381 DEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP 440
DEIQM+ D RG AWT A+LG+ A EIHLCG+ S + +++++ + TGD+L + Y+R
Sbjct: 64 DEIQMIGDQYRGSAWTNAVLGVRAKEIHLCGEISAVPIIKRLVAMTGDDLEIKTYKRLGK 123
Query: 441 LV 442
LV
Sbjct: 124 LV 125
>gi|294678314|ref|YP_003578929.1| helicase domain-containing protein [Rhodobacter capsulatus SB 1003]
gi|294477134|gb|ADE86522.1| helicase domain protein [Rhodobacter capsulatus SB 1003]
Length = 947
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 319 KKGIYCSPLRLLAMEVFDK-VNALG-VYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYD 376
+ G+ PLRLLA EV+D+ V A G +L+TG+E+ + + + CT E + + D
Sbjct: 5 RTGVIGLPLRLLAREVYDRIVKARGPSVVALVTGEERIVPERAQYWVCTTEAMP-EVGAD 63
Query: 377 VAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHY 435
IDEIQ+ +D RG+ +T LL + E G D ++ + ++
Sbjct: 64 FVAIDEIQLCADPERGHVFTERLLYMRGLHETLFLGS----DAMKGAIAALVPKVQFARR 119
Query: 436 ERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPET 495
ER L + ++ +V FS ++ + I + V+ GAL P T
Sbjct: 120 ERLSKLSWAGSK---KISRMKPRAAIVGFSVENVYAIAELIRRQKGG-AAVVMGALSPRT 175
Query: 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555
R Q ++ Q+ + D LVA+DA+GMGLNL+I V F + +K++G ++ + ++ QIA
Sbjct: 176 RNAQVAMY--QNGDVDYLVATDAIGMGLNLDIEHVAFSATAKFDGRRMRHLFPHELGQIA 233
Query: 556 GRAGR 560
GRAGR
Sbjct: 234 GRAGR 238
>gi|374333208|ref|YP_005083392.1| helicase domain-containing protein [Pseudovibrio sp. FO-BEG1]
gi|359345996|gb|AEV39370.1| helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 935
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 13/243 (5%)
Query: 321 GIYCSPLRLLAMEVFDK-VNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVA 378
G+ PLRLLA EV+ + V G +L+TG+EK + TVE + D D
Sbjct: 7 GLIGLPLRLLAREVYGRLVEKKGPDLVALITGEEKIIPKTPRFWVSTVEAMPKDLDVDFV 66
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLDVVRKICSETGDELHEQHYER 437
IDE+Q+ D RG+ +T +L L +E L G ++ ++ K+ ++ R
Sbjct: 67 AIDEVQLAGDLERGHVFTDRILNLRGREETLLLGSSTIRPLLEKLMPG----INVITRPR 122
Query: 438 FKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRR 497
L + L RS +VAFS E++ + I + V+ G+L P TR
Sbjct: 123 MSILTYAGSKKITRLPR-RS--AIVAFSSDEVYAIAELIRRQRGG-AAVVLGSLSPRTRN 178
Query: 498 QQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGR 557
Q +LF Q+ + D L+A+DAVGMGLNL++ + F K++G + + ++ QIAGR
Sbjct: 179 AQVDLF--QNGDVDWLIATDAVGMGLNLDVDHIAFAGHRKFDGYQYRQLTPAETGQIAGR 236
Query: 558 AGR 560
AGR
Sbjct: 237 AGR 239
>gi|357456305|ref|XP_003598433.1| ATP-dependent RNA helicase suv3 [Medicago truncatula]
gi|355487481|gb|AES68684.1| ATP-dependent RNA helicase suv3 [Medicago truncatula]
Length = 440
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 88/209 (42%), Gaps = 92/209 (44%)
Query: 318 AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDV 377
AKK CSPLRLL M+VFD+VN E YD+
Sbjct: 200 AKKRNCCSPLRLLTMKVFDEVN---------------------------------ESYDM 226
Query: 378 AVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH-YE 436
++DEIQMM+D+ GYA TR L+GL DE+HL T DEL EQ YE
Sbjct: 227 TIVDEIQMMADSYSGYACTRVLIGLKDDELHL---------------YTEDELCEQKLYE 271
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETR 496
RFK LVVEAKTLLG++ LPPE R
Sbjct: 272 RFKQLVVEAKTLLGNV-------------------------------------YLPPEIR 294
Query: 497 RQQANLFNDQDNE------FDVLVASDAV 519
QQ NLFNDQ F + SD +
Sbjct: 295 SQQVNLFNDQSTSVTKFLLFQQIAGSDRI 323
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 78/169 (46%), Gaps = 28/169 (16%)
Query: 602 EQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFN 661
+QV LF Q ++ T L ++ GS D I K+AN LEK++GLSLE+RFN
Sbjct: 296 QQVNLFNDQSTSVTKFLLFQQIA------GS------DRIYKIANPLEKIEGLSLENRFN 343
Query: 662 FCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMY 721
++R + P +++MGM K S +ND+ LLDL +
Sbjct: 344 LYLQQCSVRRSQ---------------LPGNMSMGMLKCSVQNDSGLLDLRVGIEYYRHI 388
Query: 722 LWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKPK 770
+ F Y ++ LLGQSL A WKPE+R GKPK
Sbjct: 389 FGYQAILMRKTF-YMQRKMRQWLQTLHLLGQSLVKAGWKPEARNRGKPK 436
>gi|321453701|gb|EFX64912.1| hypothetical protein DAPPUDRAFT_65819 [Daphnia pulex]
Length = 94
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345
+P AR RKI++H GPTNSGKTY+ L+RF + + YC P + L EV+ K N G C
Sbjct: 1 YPEARAFTRKIVFHSGPTNSGKTYHVLERFCNSNQESYCGPFKFLTSEVYCKCNQRGCPC 60
Query: 346 SLLTGQEKKLV-----PFSNHIACTVEMVSTD 372
L+TG+E+ S+H++CTVEM+S +
Sbjct: 61 DLITGEERNFANDIDKSPSSHVSCTVEMISVN 92
>gi|218516034|ref|ZP_03512874.1| putative ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
Length = 465
Score = 89.0 bits (219), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 11/217 (5%)
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
+L+TG+EK + CTVE + + IDE+Q+ D RG+ +T +L L
Sbjct: 9 VALVTGEEKISPANARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRG 68
Query: 405 -DEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463
+E L G ++ +++ + G + E+ R L + + L RS +VA
Sbjct: 69 REETLLLGAATMRPILQLLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RS--AIVA 121
Query: 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
FS E++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+GMGL
Sbjct: 122 FSADEVYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGL 178
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
NL++ V F K++G + + ++ QIAGRAGR
Sbjct: 179 NLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRAGR 215
>gi|302798691|ref|XP_002981105.1| hypothetical protein SELMODRAFT_420766 [Selaginella moellendorffii]
gi|300151159|gb|EFJ17806.1| hypothetical protein SELMODRAFT_420766 [Selaginella moellendorffii]
Length = 730
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/452 (25%), Positives = 160/452 (35%), Gaps = 186/452 (41%)
Query: 327 LRLLA---MEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEI 383
LR LA +EV +K+N+L V CSLLTGQE+ V + H A TVEM Y+ AVIDEI
Sbjct: 70 LRSLASPRLEVAEKLNSLNVPCSLLTGQERNEVEGAQHKAMTVEMADITREYECAVIDEI 129
Query: 384 QMMSDA--CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL 441
Q + R Y L+ L +LDV G E+ + +E P
Sbjct: 130 QARTKIFLVRCYLRLYLLMNLYV----------ILDVF-------GAEIAFETFEALHPA 172
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQAN 501
+ +C V+YG+LPPETR +Q
Sbjct: 173 I----------------------------------------NCSVVYGSLPPETRTKQ-- 190
Query: 502 LFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561
L K++G + QVKQIAGRAGR
Sbjct: 191 ---------------------------------LDKFDGIARCYLSVMQVKQIAGRAGR- 216
Query: 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLE 621
Y GL + +P N+ F +LE
Sbjct: 217 ---YQIGLCCS------------------------FYP-------------NFPFSAILE 236
Query: 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRF 681
KF + +FLC ++ +A ML+ + L ++ RF FC
Sbjct: 237 KFIATVTVSSMFFLCDSTNLLAIARMLDDIP-LPMDSRFLFCTC---------------- 279
Query: 682 ASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEA 741
+L +LE+ H+VL MY+WLS++ E+ F
Sbjct: 280 ----------------------TQKDLAELESVHKVLDMYIWLSYRL-EDAF-------- 308
Query: 742 MATDIAELLGQSLTNANWKPESRQAGKPKLHQ 773
+ D E Q + A + SR+A K +L Q
Sbjct: 309 VDRDRTETPVQRIDRAGTELSSRKAAKRELIQ 340
>gi|387213081|gb|AFJ69157.1| hypothetical protein NGATSA_2056000, partial [Nannochloropsis
gaditana CCMP526]
Length = 94
Score = 87.8 bits (216), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGD 451
G+AWTR +LGL A E+HLCG P+ +++V+++ E GD++ + Y R PL + K +
Sbjct: 1 GWAWTRVVLGLPAIEVHLCGTPAFVEIVQELAREIGDDVEVREYARLSPLKPQKKA-VAS 59
Query: 452 LRNVRSGDCVVAFSRREIFEVKMAIEKHTN 481
+ +GDCVVAFSR+++FE+K IE T+
Sbjct: 60 WAEIEAGDCVVAFSRKKLFELKNEIEVATS 89
>gi|218662319|ref|ZP_03518249.1| helicase domain protein [Rhizobium etli IE4771]
Length = 224
Score = 85.5 bits (210), Expect = 1e-13, Method: Composition-based stats.
Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 11/220 (5%)
Query: 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDK-VNALGVY-CSLLTGQ 351
R + GPTN+GKT+ A++R + G+ PLRLLA EV+ + V +GV +L+TG+
Sbjct: 13 RGVTAMLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 72
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLC 410
EK + CTVE + D IDE+Q+ D RG+ +T +L L +E L
Sbjct: 73 EKISPANARFSVCTVEAMPRDTKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G ++ +++++ G + E+ R L + + L RS +VAFS E++
Sbjct: 133 GAATMRPILQQLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RSA--IVAFSADEVY 185
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
+ I + V+ GAL P TR Q L+ D E+
Sbjct: 186 AIAELIRRQRG-GAAVVLGALSPRTRNAQVALYQAGDVEY 224
>gi|402225812|gb|EJU05873.1| hypothetical protein DACRYDRAFT_104362 [Dacryopinax sp. DJM-731
SS1]
Length = 508
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 332 MEVFDKVNALGVYCSLLTGQEKKLV-PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
+ V K N L C+LLTG+E++ V ++H+ACTVEM DV V+DEIQ+++D
Sbjct: 408 LHVARKWNLLARACNLLTGEEQRWVGERASHLACTVEMTPCGTELDVVVLDEIQLLADPD 467
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG 427
RG +W + LLG A E+H+CG+ + + +V++I E G
Sbjct: 468 RGSSWMQVLLGANAQEVHVCGEDTAVGLVQRIAEECG 504
>gi|156359369|ref|XP_001624742.1| predicted protein [Nematostella vectensis]
gi|156211540|gb|EDO32642.1| predicted protein [Nematostella vectensis]
Length = 64
Score = 80.5 bits (197), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 43/57 (75%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAME 333
+DL PH FP AR ++RKIIYH GPTNSGKT+ +L+ F AK +YC+PLRLLA E
Sbjct: 8 SDLRGPHDLFPEARKLRRKIIYHAGPTNSGKTHQSLKSFKTAKSAMYCAPLRLLATE 64
>gi|126461854|ref|YP_001042968.1| helicase domain-containing protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103518|gb|ABN76196.1| helicase domain protein [Rhodobacter sphaeroides ATCC 17029]
Length = 786
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
C V+ GAL P TR Q L+ Q+ + D LVA+DA+GMGLNL+IR V F S K++G ++
Sbjct: 14 CAVVMGALSPRTRNAQVALY--QNGDVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRM 71
Query: 544 IPVPGSQVKQIAGRAGR 560
P+ ++ QIAGRAGR
Sbjct: 72 RPLFPHELGQIAGRAGR 88
>gi|255621501|ref|XP_002540213.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223498139|gb|EEF22170.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 272
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334
ES +L + F A M+R+ I GPTNSGKT+ A++ A G+Y +PLRLLA+E
Sbjct: 164 ESINLAEYPDTFDVASKMRRRFIALLGPTNSGKTHKAMEALANAASGVYLAPLRLLALEN 223
Query: 335 FDKV-----NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVA 378
++++ + + SL+TG+E++L + H+ TVEM+ T ++A
Sbjct: 224 YERLVDARPHGKELKVSLVTGEERRLAEGATHVTSTVEMLDTRTAVEMA 272
>gi|357456309|ref|XP_003598435.1| ATP-dependent RNA helicase SUV3 [Medicago truncatula]
gi|355487483|gb|AES68686.1| ATP-dependent RNA helicase SUV3 [Medicago truncatula]
Length = 127
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQL 611
+YPD L TTL LDD+DYLIECLKQPF+ V +VG+FPF+EQVELF G +
Sbjct: 22 LYPDELATTLQLDDMDYLIECLKQPFDHVTRVGIFPFYEQVELFPGNI 69
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 690 PVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAEL 749
P +I MGM K SA+ND+ +LDLE++H VL YLWLS+ F E+ FPYAKKAEAM +D A L
Sbjct: 66 PGNIPMGMLKCSAQNDSGILDLESRHPVLFSYLWLSNHFDEDNFPYAKKAEAMVSDNACL 125
Query: 750 LG 751
LG
Sbjct: 126 LG 127
>gi|375138882|ref|YP_004999531.1| superfamily II RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359819503|gb|AEV72316.1| superfamily II RNA helicase [Mycobacterium rhodesiae NBB3]
Length = 845
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 139/345 (40%), Gaps = 72/345 (20%)
Query: 302 PTNSGKTY---NALQRFMEA-KKGIYCSPLRLLAMEVF----DKVNALGVYCSLLTGQEK 353
PT SGK+ AL M A ++ Y +P++ L E F D A V +LTG +
Sbjct: 63 PTGSGKSLVATGALYAAMSAARRSYYTAPIKALVSEKFFALCDVFGAANV--GMLTG-DA 119
Query: 354 KLVPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
+ + IACT E+++ D + V+DE D RG+AW LL L +
Sbjct: 120 AVNGNAPIIACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPKAQ 179
Query: 407 IHL----CGDPSVL--DVVRKICSETGDELHEQ------HYERFKPLVVEAKTLLGDLRN 454
L GD + L D++R+ T H + HY P+ + DL
Sbjct: 180 FLLMSATLGDVTFLRDDLIRRTGRPTALVAHAERPVPLHHYYATTPM----HETIADLLE 235
Query: 455 VRSGDC-VVAFSRREIFEVKMAI-------------------------------EKHTNH 482
R VV F++ E A+ + H
Sbjct: 236 TRQAPVYVVHFTQASALERAQALMSVNVCTKEEKKAIADLIGAFRFSSAFGATLSRLVRH 295
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 296 GIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTR 353
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + QIAGRAGR G Y T + D+ +E LKQ
Sbjct: 354 TRLLSAREFHQIAGRAGRAG--YDTAGTVVVQAP--DHEVENLKQ 394
>gi|433648753|ref|YP_007293755.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
gi|433298530|gb|AGB24350.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
Length = 849
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 140/345 (40%), Gaps = 72/345 (20%)
Query: 302 PTNSGKTY---NALQRFMEAKK-GIYCSPLRLLAMEVF----DKVNALGVYCSLLTGQEK 353
PT SGK+ AL + AK+ Y +P++ L E F D A V +LTG +
Sbjct: 65 PTGSGKSLVATGALYAALAAKRQSYYTAPIKALVSEKFFALCDVFGAANV--GMLTG-DA 121
Query: 354 KLVPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
+ + IACT E+++ D + V+DE D RG+AW LL L +
Sbjct: 122 SVNAGAPIIACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPKAQ 181
Query: 407 IHL----CGDPSVL--DVVRKICSETGDELHEQ------HYERFKPLVVEAKTLLGDLRN 454
L GD + L DV R+ T + + HY P+ +GDL +
Sbjct: 182 FLLMSATLGDVTFLREDVTRRTGRTTALVANAERPVPLHHYYATTPM----HETIGDLLD 237
Query: 455 VRSGDC-VVAFSRREIFEVKMAI-------------------------------EKHTNH 482
R VV F++ E A+ + H
Sbjct: 238 TRQAPIYVVHFTQASALERAQALMSVNVCTKDEKAAIADMIGGFRFSTAFGTTLSRLVRH 297
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 298 GIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGVR 355
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + QIAGRAGR G Y T + D+ +E LKQ
Sbjct: 356 TRLLNAREFHQIAGRAGRAG--YDTAGTVVVQAP--DHEVENLKQ 396
>gi|126438203|ref|YP_001073894.1| DEAD/DEAH box helicase [Mycobacterium sp. JLS]
gi|126238003|gb|ABO01404.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
Length = 852
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 137/344 (39%), Gaps = 70/344 (20%)
Query: 302 PTNSGKTYNALQRFMEAKKG----IYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEK 353
PT SGK+ A A G Y +P++ L E F + GV+ +LTG +
Sbjct: 62 PTGSGKSLVATGAQYAALAGNLRSYYTAPIKALVSEKFFAL--CGVFGAENVGMLTG-DA 118
Query: 354 KLVPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
+ + IACT E+++ D + V+DE D RG+AW LL L +
Sbjct: 119 AVNAAAPIIACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPHAQ 178
Query: 407 IHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LGDLRNV 455
L GD + L D+ R+ T H ER PL T +GDL
Sbjct: 179 FLLMSATLGDVTFLREDLTRRTGRPTA---LVAHAERPVPLFYSYATTPMHETIGDLLET 235
Query: 456 RSGDC-VVAFSRREIFEVKMAI-------------------------------EKHTNHH 483
R VV F++ E A+ + H
Sbjct: 236 RQAPIYVVHFTQASALERAQALMSINVCTKAEKAAIADLIGAFRFSTAFGSTLSRLVRHG 295
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 296 IGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTRT 353
Query: 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + QIAGRAGR G Y T + D+ +E LKQ
Sbjct: 354 RLLNAREFHQIAGRAGRAG--YDTAGTVVVQAP--DHEVENLKQ 393
>gi|108802221|ref|YP_642418.1| DEAD/DEAH box helicase [Mycobacterium sp. MCS]
gi|119871374|ref|YP_941326.1| DEAD/DEAH box helicase [Mycobacterium sp. KMS]
gi|108772640|gb|ABG11362.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
gi|119697463|gb|ABL94536.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
Length = 852
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 137/344 (39%), Gaps = 70/344 (20%)
Query: 302 PTNSGKTYNALQRFMEAKKG----IYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEK 353
PT SGK+ A A G Y +P++ L E F + GV+ +LTG +
Sbjct: 62 PTGSGKSLVATGAQYAALAGNLRSYYTAPIKALVSEKFFAL--CGVFGAENVGMLTG-DA 118
Query: 354 KLVPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
+ + IACT E+++ D + V+DE D RG+AW LL L +
Sbjct: 119 AVNAAAPIIACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPHAQ 178
Query: 407 IHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LGDLRNV 455
L GD + L D+ R+ T H ER PL T +GDL
Sbjct: 179 FLLMSATLGDVTFLREDLTRRTGRPTA---LVAHAERPVPLFYSYATTPMHETIGDLLET 235
Query: 456 RSGDC-VVAFSRREIFEVKMAI-------------------------------EKHTNHH 483
R VV F++ E A+ + H
Sbjct: 236 RQAPIYVVHFTQASALERAQALMSINVCTKAEKAAIADLIGAFRFSTAFGSTLSRLVRHG 295
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 296 IGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTRT 353
Query: 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + QIAGRAGR G Y T + D+ +E LKQ
Sbjct: 354 RLLNAREFHQIAGRAGRAG--YDTAGTVVVQAP--DHEVENLKQ 393
>gi|392414452|ref|YP_006451057.1| superfamily II RNA helicase [Mycobacterium chubuense NBB4]
gi|390614228|gb|AFM15378.1| superfamily II RNA helicase [Mycobacterium chubuense NBB4]
Length = 850
Score = 76.6 bits (187), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 130/321 (40%), Gaps = 66/321 (20%)
Query: 302 PTNSGKT-------YNALQRFMEAK-KGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQ 351
PT SGK+ Y AL R + Y +P++ L E F + ++ V +LTG
Sbjct: 64 PTGSGKSLVATGAQYAALARSSAGNGRSYYTAPIKALVSEKFFALCSVFGAVNVGMLTG- 122
Query: 352 EKKLVPFSNHIACTVEMVST-------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
+ + + IACT E+++ D + V+DE D RG+AW LL L
Sbjct: 123 DAAVNADAPIIACTAEILANIALREGPDSSAGLVVMDEFHFYGDPDRGWAWQVPLLELPH 182
Query: 405 DEIHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LGDLR 453
+ L GD + L D+ R+ T + ER PL T +GDL
Sbjct: 183 AQFLLMSATLGDVTTLREDLTRRTGRPTA---LVANAERPVPLYYSYATTPMHETIGDLL 239
Query: 454 NVRSGDC-VVAFSRREIFEVKMAI-------------------------------EKHTN 481
+ R VV F++ E A+ +
Sbjct: 240 DTRQAPVYVVHFTQASALERAQALMSVNVSTKAEKAAIADMIGAFRFSTTFGTTLSRLVR 299
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
H V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G
Sbjct: 300 HGIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGT 357
Query: 542 KIIPVPGSQVKQIAGRAGRRG 562
+ + + QIAGRAGR G
Sbjct: 358 RTRLLNAREFHQIAGRAGRAG 378
>gi|218678406|ref|ZP_03526303.1| helicase domain protein [Rhizobium etli CIAT 894]
Length = 208
Score = 75.5 bits (184), Expect = 1e-10, Method: Composition-based stats.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF----DKVNALGVYCSLLTGQEKKLV 356
GPTN+GKT+ A++R + G+ PLRLLA EV+ +KV A V +L+TG+EK
Sbjct: 20 GPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNV--ALVTGEEKISP 77
Query: 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSV 415
P + CTVE + + IDE+Q+ D RG+ +T +L L +E L G ++
Sbjct: 78 PNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLLGAATM 137
Query: 416 LDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMA 475
+++++ G + E+ R L + + L RS +VAFS E++ +
Sbjct: 138 QPILQQLLP--GITIVER--PRLSHLFYAGQKKITRLPQ-RSA--IVAFSADEVYAIAEL 190
Query: 476 IEKHTNHHCCVIYGALPP 493
I + V+ GAL P
Sbjct: 191 IRRQRG-GAAVVLGALSP 207
>gi|340360413|ref|ZP_08682883.1| DEAD/DEAH box helicase domain protein [Actinomyces sp. oral taxon
448 str. F0400]
gi|339883614|gb|EGQ73457.1| DEAD/DEAH box helicase domain protein [Actinomyces sp. oral taxon
448 str. F0400]
Length = 902
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 140/338 (41%), Gaps = 64/338 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH +R+++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 52 PHQDEALSRILEGRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 111
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V G ++TG + + + I CT E+++ + D V+DE +D
Sbjct: 112 LVRLFGADNVGMVTG-DTSINAAAPIICCTAEILANQSLREGEELDVDTVVMDEFHYYAD 170
Query: 389 ACRGYAWTRALLGLMADEIHL----CGDPSVL--DVVRKICSETGDELHE-QHYERFKPL 441
RG+AW LL L ++ L GD S L D+ R+ TG E+ ER PL
Sbjct: 171 PQRGWAWQVPLLELPRAQMVLMSATLGDVSFLAADMDRR----TGREVAVLDKAERPVPL 226
Query: 442 VVE-AKTLLGDL--RNVRSGDC---VVAFSRRE-------IFEVKMAIEKHTNHHCCVI- 487
+E +G+L R V G VV FS++E + V + H N +
Sbjct: 227 EMEYVVEPIGELLQRLVGQGRAPIYVVHFSQKEAIDRATSLLSVDLGARAHKNEIAAALG 286
Query: 488 -----------------------YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524
+ + P RR L + V+ +D +G+G+N
Sbjct: 287 DFRFGGGFGATVSRLLRRGIGIHHAGMLPRYRRLVERLA--RAGLLAVICGTDTLGVGIN 344
Query: 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
+ IR VV SL K++G K + + QIAGRAGR G
Sbjct: 345 VPIRSVVLTSLVKFDGTKERHLTAREFHQIAGRAGRAG 382
>gi|420236857|ref|ZP_14741334.1| DEAD/DEAH box helicase [Parascardovia denticolens IPLA 20019]
gi|391879960|gb|EIT88460.1| DEAD/DEAH box helicase [Parascardovia denticolens IPLA 20019]
Length = 867
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 137/316 (43%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNAL-QRFM---EAKKGIYCSPLRLLAME-VFDKVNALG-VYCSLLTGQEKKL 355
PT SGK+ A+ FM + +K Y +P++ L E F+ V+ G Y ++TG + ++
Sbjct: 77 PTGSGKSMIAIAMHFMALCQGEKSCYTAPIKALVSEKFFELVSIFGPAYVGMITG-DTRI 135
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + + +DE D+ RG+AW L+ L +
Sbjct: 136 NADAPIICCTAEILANQALREGERGNISCVAMDEFHFYGDSDRGWAWQVPLITLHHTQFL 195
Query: 409 LCGDPSVLDV--VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR---------- 456
L ++ DV V + E D + + +P+ +E + L+ L NV
Sbjct: 196 LMS-ATLGDVQGVEDLLEEQTDRPVDLISDAKRPVPLEYQYLVEPLPNVVNRLIADEKTP 254
Query: 457 ------SGDCVVAF----------SRREIFEVKMAIEKHTNHHCC--------------V 486
S D V+ S+ + ++K A+E HT V
Sbjct: 255 IYIVHFSQDAAVSAAENLAGLGVASKEQREKIKQALE-HTKFTTAFGKTLRRFLINGIGV 313
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P RR L QD V+ +D +G+G+N+ I VVF +L+KY+G K +
Sbjct: 314 HHAGMLPRYRRMVEQLA--QDGLLPVICGTDTLGVGINVPIHTVVFTALTKYDGYKQRRL 371
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 372 RAREFHQIAGRAGRSG 387
>gi|294786972|ref|ZP_06752226.1| putative DNA or RNA helicase superfamily II [Parascardovia
denticolens F0305]
gi|315226611|ref|ZP_07868399.1| DEAD/DEAH box helicase [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|294485805|gb|EFG33439.1| putative DNA or RNA helicase superfamily II [Parascardovia
denticolens F0305]
gi|315120743|gb|EFT83875.1| DEAD/DEAH box helicase [Parascardovia denticolens DSM 10105 = JCM
12538]
Length = 867
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 137/316 (43%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNAL-QRFM---EAKKGIYCSPLRLLAME-VFDKVNALG-VYCSLLTGQEKKL 355
PT SGK+ A+ FM + +K Y +P++ L E F+ V+ G Y ++TG + ++
Sbjct: 77 PTGSGKSMIAIAMHFMALCQGEKSCYTAPIKALVSEKFFELVSIFGPAYVGMITG-DTRI 135
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + + +DE D+ RG+AW L+ L +
Sbjct: 136 NADAPIICCTAEILANQALREGERGNISCVAMDEFHFYGDSDRGWAWQVPLITLHHTQFL 195
Query: 409 LCGDPSVLDV--VRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVR---------- 456
L ++ DV V + E D + + +P+ +E + L+ L NV
Sbjct: 196 LMS-ATLGDVQGVEDLLEEQTDRPVDLISDAKRPVPLEYQYLVEPLPNVVNRLIADEKTP 254
Query: 457 ------SGDCVVAF----------SRREIFEVKMAIEKHTNHHCC--------------V 486
S D V+ S+ + ++K A+E HT V
Sbjct: 255 IYIVHFSQDAAVSAAENLAGLGVASKEQREKIKQALE-HTKFTTAFGKTLRRFLINGIGV 313
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P RR L QD V+ +D +G+G+N+ I VVF +L+KY+G K +
Sbjct: 314 HHAGMLPRYRRMVEQLA--QDGLLPVICGTDTLGVGINVPIHTVVFTALTKYDGYKQRRL 371
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 372 RAREFHQIAGRAGRSG 387
>gi|153006311|ref|YP_001380636.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. Fw109-5]
gi|152029884|gb|ABS27652.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
Fw109-5]
Length = 868
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 145/355 (40%), Gaps = 61/355 (17%)
Query: 264 PDEI-KRFRAMIESADLT-KPHTWFPFARVMKRKIIYHCGPTNSGK----TYNALQRFME 317
PD + RF A + + LT PH +++ R+ + PT SGK T+ Q E
Sbjct: 41 PDAVLDRFVAWVGATGLTLYPHQEEAILQLLDRRHLVLNTPTGSGKSLVATFLHFQAMAE 100
Query: 318 AKKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTG-----QEKKLVPFSNHIACTVEMVS 370
K+ Y P++ L E FD G ++TG ++ +V + I + +
Sbjct: 101 GKRSFYTCPIKALVNEKFFDLCRLFGPDNVGMMTGDAAVNRDAPIVCCTAEILMNLAVRE 160
Query: 371 TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL----CGDP-SVLDVVRKICSE 425
D V+DE D RG AW LL L L GD ++ + +R++
Sbjct: 161 AAPRADAVVMDEFHYYGDRERGVAWQVPLLALEDSRFLLMSATLGDTRAIEESLRQV--- 217
Query: 426 TGDELHE-QHYERFKPLVVEAK------TLLGDLRNVRSGDCVVAFSRREIFE------- 471
+G E+ +H R PL E + TL + VR+ +V F++R E
Sbjct: 218 SGREVAAVRHAARPVPLEFEYRETPLHETLEALVTAVRAPIYLVNFTQRAAAEQAQNLMS 277
Query: 472 -----------VKMAIE-------------KHTNHHCCVIYGALPPETRRQQANLFNDQD 507
+ A+E + H + + L P+ R L Q
Sbjct: 278 ANFSSKEEKGRIAAALEGFRFDSPYGKDLQRFLRHGVGLHHAGLLPKYRLLVEKL--AQG 335
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
V+ +D +GMG+N+ IR V+F L K++G+K + QI+GRAGR+G
Sbjct: 336 GLLKVVSGTDTLGMGVNIPIRTVLFTQLCKFDGEKTAILSARDFHQISGRAGRKG 390
>gi|256832917|ref|YP_003161644.1| DEAD/DEAH box helicase [Jonesia denitrificans DSM 20603]
gi|256686448|gb|ACV09341.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
20603]
Length = 873
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 138/331 (41%), Gaps = 64/331 (19%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQ-RFMEAKKG---IYCSPLRLLAME-VFDKVNALGVY- 344
V+ + PT SGK+ A+ F+ +G Y +PL+ L E F V G +
Sbjct: 49 VLSGNHVIMATPTGSGKSLVAMAAHFVALARGQRTYYTAPLKALVSEKFFALVEVFGSHN 108
Query: 345 CSLLTGQEKKLVPFSNHIACTVEMV-----------STDEMYDVAVIDEIQMMSDACRGY 393
++TG + + P + I CT E++ S D D V+DE +D RG+
Sbjct: 109 VGMMTG-DSAVNPDAPIICCTAEILANQALRRGGEQSQDPGVDQVVMDEFHFYADPQRGW 167
Query: 394 AWTRALLGLMADEIHL----CGDPSVLDVVRKICSETGDELHE-QHYERFKPL----VVE 444
AW LL L + L GD S + I TG ++ E ER PL V+E
Sbjct: 168 AWQVPLLELPRAQFVLMSATLGDTSFF--ITDIKERTGRDVVEVSGAERPVPLMFSYVIE 225
Query: 445 A-KTLLGDLRNV-RSGDCVVAFSRREIFEVKMAI-------------------------- 476
++ +L R+ +V F++++ E A+
Sbjct: 226 PLPEVIEELVTTHRAPVYIVHFTQKDAVERAQALLSTKLSSAAEKAAIVEELGAFRFGSG 285
Query: 477 -----EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
K H V + + P+ RR L Q V+ +D +G+G+N+ IR V+
Sbjct: 286 FGKLLSKFLRHGVGVHHAGMLPKYRRVVERL--TQKGLLKVVCGTDTLGVGINVPIRTVL 343
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
SL K++G+++ + + QIAGRAGR G
Sbjct: 344 LTSLVKFDGERMRHITAREFHQIAGRAGRAG 374
>gi|374609088|ref|ZP_09681885.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
gi|373552828|gb|EHP79431.1| DEAD/DEAH box helicase domain protein [Mycobacterium tusciae JS617]
Length = 845
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 135/348 (38%), Gaps = 78/348 (22%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAME-------VFDKVNALGVYCSLLTG 350
PT SGK+ A A ++ Y +P++ L E VF N +LTG
Sbjct: 63 PTGSGKSLVATGALYAALAAQRRSYYTAPIKALVSEKFFALCEVFGAAN-----VGMLTG 117
Query: 351 QEKKLVPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
+ + P + I CT E+++ D + V+DE D RG+AW LL L
Sbjct: 118 -DAAVNPGAPIITCTAEVLANISLREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELP 176
Query: 404 ADEIHL----CGDPSVL--DVVRKICSETG------DELHEQHYERFKPLVVEAKTLLGD 451
+ L G + L D+ R+ T + HY P+ +GD
Sbjct: 177 RAQFLLMSATLGGVTFLREDLTRRTGRPTALVANALRPVPLHHYYATTPM----HETIGD 232
Query: 452 LRNVRSGDCVV-------AFSRREIF--------EVKMAIEKH----------------- 479
L + V A R + E K AI +H
Sbjct: 233 LLETKQAPIYVVHFTQASALERAQALMSVNVSTKEEKKAIAEHIGQFRFSTAFGTTLSRL 292
Query: 480 TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN 539
H V + + P+ RR L Q ++ +D +G+G+N+ IR VVF +LSKY+
Sbjct: 293 VRHGIGVHHAGMLPKYRRLVEQLA--QAGLLKIICGTDTLGVGINVPIRTVVFSALSKYD 350
Query: 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
G + + + QIAGRAGR G T+ + D+ +E LKQ
Sbjct: 351 GTRTRLLNAREFHQIAGRAGRAGY----DTAGTVVVQAPDHEVENLKQ 394
>gi|336321468|ref|YP_004601436.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
gi|336105049|gb|AEI12868.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 852
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 132/316 (41%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNALQ-RFMEAKKGI---YCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A F+ +G+ Y +PL+ L E F V A G ++TG + +
Sbjct: 56 PTGSGKSLVATAAHFVALARGVRTYYTAPLKALVSEKFFALVAAFGSENVGMMTG-DSAV 114
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
P + I CT E+++ + D V+DE SD RG+AW LL L +
Sbjct: 115 NPGAPIICCTAEILANVALRDGKDADAGQVVMDEFHFYSDPQRGWAWQVPLLELPRAQFV 174
Query: 409 L----CGDPSVLDVVRKICSETGDELHE-QHYERFKPL----VVEA-KTLLGDLRNVRSG 458
L GD V + + TG E+ ER PL VVE +L +L R
Sbjct: 175 LMSATLGD--VTFFADDLRARTGGEVAVVADAERPVPLTFSYVVEPLHEVLDELVTTRRA 232
Query: 459 DC-VVAFSRREIFEVKMAIEKHT-------------------------------NHHCCV 486
VV F+++E E ++ T H V
Sbjct: 233 PVYVVHFTQKEAVERAQSLLSATLTSREQRDAIAAELGAFRFGPGFGRTLSRLLRHGVGV 292
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L Q V+ +D +G+G+N+ IR VV SL KY+G ++ +
Sbjct: 293 HHAGMLPKYRRVVERL--TQKGLLPVVCGTDTLGVGINVPIRTVVLTSLVKYDGTRMRHL 350
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 351 SAREFHQIAGRAGRAG 366
>gi|383822612|ref|ZP_09977829.1| superfamily II RNA helicase [Mycobacterium phlei RIVM601174]
gi|383330699|gb|EID09219.1| superfamily II RNA helicase [Mycobacterium phlei RIVM601174]
Length = 845
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 139/349 (39%), Gaps = 75/349 (21%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVF----DKVNALGVYCSLLTGQEK 353
PT SGK+ A A ++ Y +P++ L E F D A V +LTG +
Sbjct: 58 PTGSGKSLVATGALFAALAGGRRSFYTAPIKALVSEKFFAMCDVFGAANV--GMLTG-DA 114
Query: 354 KLVPFSNHIACTVEMVSTDEMYD------------VAVIDEIQMMSDACRGYAWTRALLG 401
+ + I CT E+++ + + + V+DE D RG+AW LL
Sbjct: 115 AVNSEAPIIVCTAEVLANIALREGGPRGPLGGEPVMVVMDEFHFYGDPERGWAWQVPLLE 174
Query: 402 LMADEIHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LG 450
L + L GD + L D+ R+ T + ER PL T +G
Sbjct: 175 LPKAQFLLMSATLGDVTFLREDLTRRTGRPTA---LVANAERPVPLFFSYATTPMHETIG 231
Query: 451 DLRNVRSGDCVV-------AFSRREIF--------EVKMAIEKH---------------- 479
DL + R V A R + E K AI +H
Sbjct: 232 DLLDTRQAPIYVVHFTQASALERAQALMSVNVCTKEEKAAIAEHIGAFRFSTSFGSTLSR 291
Query: 480 -TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
H V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY
Sbjct: 292 LVRHGIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKY 349
Query: 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+G + + + QIAGRAGR G T+ + D+ +E LKQ
Sbjct: 350 DGVRTRLLNAREFHQIAGRAGRAGF----DTAGTVVVQAPDHEVENLKQ 394
>gi|365824422|ref|ZP_09366496.1| hypothetical protein HMPREF0045_00132 [Actinomyces graevenitzii
C83]
gi|365259482|gb|EHM89467.1| hypothetical protein HMPREF0045_00132 [Actinomyces graevenitzii
C83]
Length = 884
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 141/363 (38%), Gaps = 74/363 (20%)
Query: 264 PDEIKRFRAMIESADLTK----PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRF 315
P + + A + AD T PH +++ + + PT SGK+ AL
Sbjct: 24 PTSDELYDAFTQWADSTGRPLYPHQEESLLAIVEGEHVVAATPTGSGKSMIALAAHFTSL 83
Query: 316 MEAKKGIYCSPLRLLAME-VFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM 374
++ Y +PL+ L E F+ + G + + + P + I CT E+++ +
Sbjct: 84 ARGERSYYTAPLKALVSEKFFELIRLFGAQNVGMVTGDSSINPDAPIICCTAEILANQSL 143
Query: 375 -------YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKIC 423
D V+DE +D RG+AW LL L ++ L GD S L V+ +
Sbjct: 144 RQGRALDVDTVVMDEFHYYADPQRGWAWQVPLLELPQAQMVLLSATLGDVSWL--VKDLR 201
Query: 424 SETGDELH-------------EQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
TG + E E PL+ + L+G ++ VV FS+RE
Sbjct: 202 ERTGRSVAVVDDAVRPVPLDFEYSVEAIGPLL---ERLIG---QNKAPVYVVHFSQREAI 255
Query: 471 EVKMAI-------------------------------EKHTNHHCCVIYGALPPETRRQQ 499
E A+ K V + + P RR
Sbjct: 256 ERASALLSTKLIDRAQRDEISQAIAGERFGVGFGATLSKLLRAGIGVHHAGMLPRYRRLV 315
Query: 500 ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559
L Q V+ +D +G+G+N+ IR VVF SL K++G K + + QIAGRAG
Sbjct: 316 ERLA--QQGLLPVICGTDTLGVGINVPIRCVVFTSLVKFDGAKERHLTAREFHQIAGRAG 373
Query: 560 RRG 562
R G
Sbjct: 374 RAG 376
>gi|433608113|ref|YP_007040482.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
gi|407885966|emb|CCH33609.1| DEAD/DEAH box helicase domain protein [Saccharothrix espanaensis
DSM 44229]
Length = 824
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 127/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A+ E +K Y +P++ L E F ++ G ++TG + +
Sbjct: 53 PTGSGKSLVAIGAHFAALAEGRKTYYTAPIKALVSEKFFALIDTFGAENVGMMTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + D A V+DE S+ RG+AW L+ L +
Sbjct: 112 NESAPIICCTAEILANIALRDGAEADVGQVVMDEFHFYSEPDRGWAWQVPLIELPRAQFL 171
Query: 409 L----CGDPSVL--DVVRKICSETG-----------------DELHEQHYE----RFKPL 441
L GD S D+ R+ T LHE E R P+
Sbjct: 172 LMSATLGDVSFFEKDLTRRTGRPTTVVRSAERPVPLNFQYVTTPLHETIEELLHGREAPI 231
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
V T L +S V +R E + I + H V +
Sbjct: 232 YVVHFTQASALERAQSLMSVNVATRAEKDAIAAMIGRFRFTSGFGKTLSRLVRHGIGVHH 291
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G + +
Sbjct: 292 AGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFTALSKYDGTRTRHLKA 349
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 REFHQIAGRAGRAG 363
>gi|167648081|ref|YP_001685744.1| hypothetical protein Caul_4122 [Caulobacter sp. K31]
gi|167350511|gb|ABZ73246.1| hypothetical protein Caul_4122 [Caulobacter sp. K31]
Length = 172
Score = 73.6 bits (179), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 301 GPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPF 358
GPTN+GKT+ A++R + + PLRLLA E++D++ L +L+TG+EK + P
Sbjct: 18 GPTNTGKTHLAVERMLGHASVMIGLPLRLLAREIYDRIVKLRGKASVALITGEEKIVPPR 77
Query: 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
+ + CTVE + + IDEIQ+ +D RG+ +T LL
Sbjct: 78 AAYFVCTVEAMPLTREVEFLAIDEIQLCADPERGHIFTHRLL 119
>gi|332671188|ref|YP_004454196.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332340226|gb|AEE46809.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 853
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 131/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + ++ Y +PL+ L E F V A G + ++TG + +
Sbjct: 60 PTGSGKSLAATAAHFVALAQGRRTFYTAPLKALVSEKFFALVEAFGSHNVGMMTG-DSSV 118
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
P + I CT E+++ + D A V+DE +D RG+AW LL L +
Sbjct: 119 NPGAPIICCTAEILANLALRDGADADVGQVVMDEFHFYADPQRGWAWQVPLLELPRTQFL 178
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQHYERFKPL-----VVEAKTLLGDLRNVRS 457
L GD + D+ R+ + + Q R PL V LL +L + R
Sbjct: 179 LMSATLGDVTFFRDDLHRRTGRDVAVVANAQ---RPVPLTFTYAVEPLHELLDELVSTRR 235
Query: 458 GDC-VVAFSRREIFEVKMAIEKHT-------------------------------NHHCC 485
VV F+++E E ++ T H
Sbjct: 236 APVYVVHFTQKEAVERAQSLLSTTLASRERRDAIAAELGAFRFGPGFGRTLSRLLRHGVG 295
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+ SL KY+G ++
Sbjct: 296 VHHAGMLPKYRRVVERL--TQKGLLPVVCGTDTLGVGINVPIRTVLLTSLVKYDGVRMRH 353
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 354 LSAREFHQIAGRAGRAG 370
>gi|405980524|ref|ZP_11038863.1| hypothetical protein HMPREF9241_01586 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404390517|gb|EJZ85586.1| hypothetical protein HMPREF9241_01586 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 955
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 132/337 (39%), Gaps = 62/337 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ-RFMEAKKG---IYCSPLRLLAME-VFD 336
PH F ++ K I PT SGK+ AL F+ G Y +PL+ L E FD
Sbjct: 110 PHQEESFLELLDGKHIIAATPTGSGKSMIALAAHFVSMANGGRSYYTAPLKALVSEKFFD 169
Query: 337 KVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSDA 389
V G + + L P + I CT E+++ + D+ V+DE D
Sbjct: 170 LVALFGAQNVGMVTGDVSLNPLAPIICCTAEILANQSLREGPSLDADMIVMDEFHYYGDP 229
Query: 390 CRGYAWTRALLGLMADEI----HLCGDPSVLDVVRKICSE-TGDELHEQHYERFKPLVVE 444
RG AW LL L + GD + R+ E TG E+ + +P+ +E
Sbjct: 230 QRGSAWQIPLLELTKPQFVAMSATLGDTAFF---RRTWQERTGREVALIDNAK-RPVPLE 285
Query: 445 AKTLLGDLRNV--------RSGDCVVAFSRREIFEVKMAIEKHT---------------- 480
+ ++ L + R +V FS+++ + K T
Sbjct: 286 FEYVVDRLDDTVERLFNEGRWPVYIVHFSQKDAVSTAQSFNKRTLISDDQKKKINAELAT 345
Query: 481 ---------------NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+ + + P RR L Q ++ +D +G+G+N+
Sbjct: 346 VSFAKGFGQTLRSLLTQGIGIHHAGMLPRYRRLVERL--TQQGLLPIVCGTDTLGVGINV 403
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR V+ SL K++G+K+ + + QIAGRAGR G
Sbjct: 404 PIRTVLLTSLVKFDGNKMRHLSAREFHQIAGRAGRAG 440
>gi|163841027|ref|YP_001625432.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162954503|gb|ABY24018.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
Length = 845
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 132/315 (41%), Gaps = 58/315 (18%)
Query: 302 PTNSGKTYNALQRF---MEAK-KGIYCSPLRLLAME-VFDKVNALGVYCSLLTGQEKKLV 356
PT SGK+ A+ M AK + Y +P++ L E F + G + + +
Sbjct: 54 PTGSGKSLVAVAAHFTAMAAKARSYYTAPIKALVSEKFFALIEIFGAQNVGMVTGDSSVN 113
Query: 357 PFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
P + I CT E+++ + + + V+DE +D RG+AW LL L + L
Sbjct: 114 PEAPIICCTAEILANIALREGAQAQVGIVVMDEFHYFADPQRGWAWQVPLLELPQAQFLL 173
Query: 410 ----CGDPSVLDVVRKICSETGDE-LHEQHYERFKPL---VVEA---KTLLGDLRNVRSG 458
GD S + ++I TG E + ER PL V+ +TL L ++
Sbjct: 174 MSATLGDMSSFE--KEITERTGRETVTVSSAERPIPLHYYYVQTPVHETLEELLSTNQAP 231
Query: 459 DCVVAFSRREIFE-------VKM------------------------AIEKHTNHHCCVI 487
+V FS+ E E + M + + H V
Sbjct: 232 VYIVHFSQAEAIERAQTLMSINMCSKEEKQRISEMIALFRFSPGFGKTLNRLVRHGIGVH 291
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+ + P+ RR L Q V+ +D +G+G+N+ IR V+F +LSKY+G + +
Sbjct: 292 HAGMLPKYRRLVEQL--AQAGLLKVICGTDTLGVGINVPIRTVLFTALSKYDGVRTRTLQ 349
Query: 548 GSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 AREFHQIAGRAGRAG 364
>gi|357394013|ref|YP_004908854.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
gi|311900490|dbj|BAJ32898.1| putative ATP-dependent helicase [Kitasatospora setae KM-6054]
Length = 836
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 131/315 (41%), Gaps = 58/315 (18%)
Query: 302 PTNSGKTY----NALQRFMEAKKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKKL 355
PT SGK+ E K+ Y +P++ L E FD G ++TG + +
Sbjct: 53 PTGSGKSLVAAGAHFAALAEGKRTFYTAPIKALVSEKFFDLCKIFGTEQVGMMTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMA---- 404
P + I CT E+++ ++D V+DE ++ RG+AW +L L
Sbjct: 112 NPTAPIICCTAEVLAQIALHDGPRADIGQVVMDEFHFYAEPDRGWAWQIPILELPQVQFL 171
Query: 405 --------------DEIHLCGDPSVL--------------------DVVRKICSETGDEL 430
D G P+ + D + ++ + +
Sbjct: 172 LMSATLGDVRRFEEDLTRRTGRPTTVVRSATRPVPLFYEYRRTNLHDTLEELLTTGQAPV 231
Query: 431 HEQHYERFKPLVVEAKTLLG-DLRNVRSGDCVVAFSRREIFEVKMA--IEKHTNHHCCVI 487
+ H+ + K V A++L+ ++ + + D + A F K + ++ H V
Sbjct: 232 YVVHFTQ-KEAVERAQSLMSINMCSKQEKDAIAALIGNFRFTTKFGRNLSRYVRHGIGVH 290
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+ + P+ RR L Q V+ +D +G+G+N+ IR V+F +LSKY+G ++ +
Sbjct: 291 HAGMLPKYRRLVERLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALSKYDGQRVRILR 348
Query: 548 GSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 349 AREFHQIAGRAGRAG 363
>gi|218459591|ref|ZP_03499682.1| putative ATP-dependent DNA helicase protein [Rhizobium etli Kim 5]
Length = 279
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 460 CVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519
+VAFS E++ + I + V+ GAL P TR Q L+ D E+ LVA+DA+
Sbjct: 5 AIVAFSADEVYAIAELIRRQRGG-AAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAI 61
Query: 520 GMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
GMGLNL++ V F K++G + + ++ QIAGRAGR
Sbjct: 62 GMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRAGR 102
>gi|444917764|ref|ZP_21237851.1| Helicase [Cystobacter fuscus DSM 2262]
gi|444710557|gb|ELW51534.1| Helicase [Cystobacter fuscus DSM 2262]
Length = 852
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 148/355 (41%), Gaps = 64/355 (18%)
Query: 265 DEIKRFRAMIESADLT-KPHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAK 319
D + RF +ES L+ P ++ K ++ PT SGK+ A+ + E K
Sbjct: 27 DILTRFVGWVESTGLSLYPAQEEAILELLGGKHLFLKTPTGSGKSLVAMALHFKAMAEGK 86
Query: 320 KGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQE--KKLVPFSNHIACTVEMVST---- 371
Y P++ L E F + A G LLTG + P I CT E++S
Sbjct: 87 VSFYTCPIKALVNEKFFALCEAFGAENVGLLTGDAAINREAPI---ICCTAEILSNLALR 143
Query: 372 DEMY--DVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL----CGDPSVLDVVRKICSE 425
D M D V+DE +D RG AW L+ L + + GD +++ K+
Sbjct: 144 DAMLRADYVVMDEFHYYADRERGIAWQLPLITLPSTTFLMMSATLGDTHLIE--EKLQEF 201
Query: 426 TGDELHE-QHYERFKPLVVEAK------TLLGDLRNVRSGDCVVAFSRREIFE------- 471
TG E+ + R PL E + TL +R ++ +V FS+R E
Sbjct: 202 TGREVASVRSAVRPVPLDFEYRETPLHETLQDLIRLGKAPIYLVNFSQRAAAEQAQNLMS 261
Query: 472 -----------VKMAI-------------EKHTNHHCCVIYGALPPETRRQQANLFNDQD 507
++ A+ ++ H + + L P+ R L Q
Sbjct: 262 VDFSTKEEKEAIRQALLEAPFDTPYGKDFQRFLRHGIGMHHAGLLPKYRLLVERL--AQT 319
Query: 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
V+ +D +G+G+N+ IR V+F L K+NG+K+ + +QIAGRAGR+G
Sbjct: 320 GLLKVISGTDTLGVGVNIPIRTVLFTQLFKFNGEKLATLSVRDFQQIAGRAGRKG 374
>gi|315446651|ref|YP_004079530.1| superfamily II RNA helicase [Mycobacterium gilvum Spyr1]
gi|315264954|gb|ADU01696.1| superfamily II RNA helicase [Mycobacterium gilvum Spyr1]
Length = 837
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 138/344 (40%), Gaps = 70/344 (20%)
Query: 302 PTNSGKTYNALQRFME--AKKGI--YCSPLRLLAMEVF----DKVNALGVYCSLLTGQEK 353
PT SGK+ A A G+ Y +P++ L E F D A V +LTG +
Sbjct: 53 PTGSGKSLVATGAIYAQLAAGGVSFYTAPIKALVSEKFFALCDVFGADNV--GMLTG-DA 109
Query: 354 KLVPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
+ + IACT E+++ TD + V+DE D RG+AW LL L +
Sbjct: 110 SVNADAPIIACTAEILANVALREGTDADIGLCVMDEFHFYGDPDRGWAWQVPLLELPQAQ 169
Query: 407 IHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LGDLRNV 455
L GD + L D+ R+ T H ER PL T + +L +
Sbjct: 170 FLLMSATLGDVTFLREDLTRRTGRPTA---LVAHAERPVPLYFSYATTPMHETIQELVDT 226
Query: 456 RSGDCVV-------AFSRREIF--------EVKMAIEKH-----------------TNHH 483
+ V A R + E K AI H H
Sbjct: 227 KQSPVYVVHFTQASALERAQALMSVNVSSKEEKAAIADHIGAFRFSTAFGTTLSRLVRHG 286
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 287 IGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTRT 344
Query: 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + QIAGRAGR G T+ + D+ +E LKQ
Sbjct: 345 RLLNAREFHQIAGRAGRAGF----DTAGTVVVQAPDHEVENLKQ 384
>gi|373252819|ref|ZP_09540937.1| putative helicase [Nesterenkonia sp. F]
Length = 869
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 130/320 (40%), Gaps = 58/320 (18%)
Query: 297 IYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAME-VFDKVNALGVYCSLLTGQ 351
+ PT SGK+ A ++ +Y +P++ L E FD V G +
Sbjct: 60 VIMATPTGSGKSLVAAAAHFLALARGERSVYTAPIKALVSEKFFDLVEIFGAENVGMVTG 119
Query: 352 EKKLVPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMA 404
+ + + I CT E+++ + + D A ++DE ++ RG+AW L+ L
Sbjct: 120 DSAVNAHAPIICCTAEILANEALRDGAEAEVGPVIMDEFHFYAEPQRGWAWQVPLIELPQ 179
Query: 405 DEIHL----CGDPSVLDVVRKICSETG-DELHEQHYERFKPLVVEAKT------LLGDLR 453
+ L GD S + R+I + TG D + R PL E T L +
Sbjct: 180 AQFLLMSATLGDTSGFE--RRISARTGRDVVTVASAHRPVPLSFEYSTTPLQQKLEELVA 237
Query: 454 NVRSGDCVVAFSRREIFEVKMAI---------------EKHTNHHCCVIYG--------- 489
+ ++ VV FS+RE E + E+ YG
Sbjct: 238 DAKAPVYVVHFSQREAAERAAGLASLNVASTETRERIKERLKTFRFAKGYGTVLNRLLRS 297
Query: 490 -------ALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
+ P+ RR L Q+ V+ +D +G+G+N+ IR V+ +LSKY+G +
Sbjct: 298 GIGVHHAGMLPKYRRLVEQLA--QEGLLKVICGTDTLGVGINVPIRTVLLSALSKYDGSR 355
Query: 543 IIPVPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 356 TRQLKAREFHQIAGRAGRAG 375
>gi|120406760|ref|YP_956589.1| DEAD/DEAH box helicase [Mycobacterium vanbaalenii PYR-1]
gi|119959578|gb|ABM16583.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
PYR-1]
Length = 851
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 142/356 (39%), Gaps = 85/356 (23%)
Query: 302 PTNSGKTY-------------NALQRFMEAKKGIYCSPLRLLAME-------VFDKVNAL 341
PT SGK+ +A R ++++ Y +P++ L E VF N
Sbjct: 58 PTGSGKSLVATGAQYFALAGADARSRNNQSRRSYYTAPIKALVSEKFFALCEVFGAAN-- 115
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVEMVST-------DEMYDVAVIDEIQMMSDACRGYA 394
+LTG + + + IACT E+++ D +AV+DE D RG+A
Sbjct: 116 ---VGMLTG-DAAVNADAPIIACTAEILANIALREGRDADIGLAVMDEFHFYGDPDRGWA 171
Query: 395 WTRALLGLMADEIHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
W LL L + L GD + L D+ R+ T + ER PL T
Sbjct: 172 WQVPLLELPDAQFLLMSATLGDVTFLREDLTRRTGRPTA---LVANAERPVPLYFSYATT 228
Query: 449 -----LGDLRNV-RSGDCVVAFSRREIFE--------------VKMAIEKH--------- 479
+ DL + +S VV F++ E K AI H
Sbjct: 229 PMHETIQDLVDTAQSPIYVVHFTQASALERAQALMSVNVSTKEEKAAIADHIGAFRFSTA 288
Query: 480 --------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531
H V + + P+ RR L Q V+ +D +G+G+N+ IR VV
Sbjct: 289 FGSTLSRLVRHGIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVV 346
Query: 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
F +LSKY+G + + + QIAGRAGR G T+ + D+ +E LKQ
Sbjct: 347 FSALSKYDGTRTRLLNAREFHQIAGRAGRAGF----DTAGTVVVQAPDHEVENLKQ 398
>gi|429758396|ref|ZP_19290913.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429173553|gb|EKY15072.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 920
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 132/319 (41%), Gaps = 56/319 (17%)
Query: 297 IYHCGPTNSGKTYNALQ-RFMEAKKG---IYCSPLRLLAME-VFDKVNALGV-YCSLLTG 350
+ PT SGK+ AL F+ G Y +PL+ L E FD V+ G ++TG
Sbjct: 56 VIAATPTGSGKSMIALAAHFVSMAHGGRSYYTAPLKALVSEKFFDLVSLFGADNVGMVTG 115
Query: 351 QEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSDACRGYAWTRALLGLM 403
+ L + I CT E+++ + D+ V+DE +D RG+AW LL L
Sbjct: 116 -DVSLNADAPIICCTAEILANQSLREGPTLDADMIVMDEFHFYADPQRGWAWQVPLLELT 174
Query: 404 ADE-IHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV------- 455
+ I + V RK +E + + +P+ +E ++ L++
Sbjct: 175 RPQFIAMSATLGDTTVFRKQWTERTGRPTVEITDAQRPVPLEYDYVVDTLQDTVERLLSE 234
Query: 456 -RSGDCVVAFSRREIF--------------EVKMAIEKHTN-----------------HH 483
R +V FS+++ EV+ I + + H
Sbjct: 235 GRHPIYIVHFSQKDAVDTASSLMDRKLVSPEVRSQIARELSSVSFTKGFGQTLRGLLSHG 294
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
V + + P RR L Q V+ +D +G+G+N+ IR V+ SL K++G K+
Sbjct: 295 IGVHHAGMLPRYRRLVERL--TQQGLLPVICGTDTLGVGINVPIRTVLLTSLVKFDGSKM 352
Query: 544 IPVPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 353 RHLRSREFHQIAGRAGRAG 371
>gi|145221612|ref|YP_001132290.1| DEAD/DEAH box helicase [Mycobacterium gilvum PYR-GCK]
gi|145214098|gb|ABP43502.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
PYR-GCK]
Length = 837
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 138/348 (39%), Gaps = 78/348 (22%)
Query: 302 PTNSGKTYNALQRFME--AKKGI--YCSPLRLLAME-------VFDKVNALGVYCSLLTG 350
PT SGK+ A A G+ Y +P++ L E VF VN +LTG
Sbjct: 53 PTGSGKSLVATGAIYAQLAAGGVSFYTAPIKALVSEKFFALCEVFGAVN-----VGMLTG 107
Query: 351 QEKKLVPFSNHIACTVEMVST-------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403
+ + + IACT E+++ D + V+DE D RG+AW LL L
Sbjct: 108 -DASVNADAPIIACTAEILANVALREGRDADIGLCVMDEFHFYGDPDRGWAWQVPLLELP 166
Query: 404 ADEIHL----CGDPSVL--DVVRKICSETG-----------------DELHEQHYE---- 436
+ L GD + L D+ R+ T +HE E
Sbjct: 167 QAQFLLMSATLGDVTFLREDLTRRTGRPTALVANAERPVPLYFSYATTPMHETIQELIDT 226
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTN--------------- 481
R P+ V T L ++ V S+ E K AI +H
Sbjct: 227 RQSPVYVVHFTQASALERAQALMSVNVSSKAE----KAAIAEHIGAFRFSSAFGSTLSRL 282
Query: 482 --HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN 539
H V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+
Sbjct: 283 VRHGIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYD 340
Query: 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
G + + + QIAGRAGR G T+ + D+ +E LKQ
Sbjct: 341 GTRTRLLNAREFHQIAGRAGRAGF----DTAGTVVVQAPDHEVENLKQ 384
>gi|149922509|ref|ZP_01910940.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
gi|149816617|gb|EDM76111.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
Length = 876
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 137/325 (42%), Gaps = 63/325 (19%)
Query: 294 RKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFDKVNALGV-YCSL 347
R +I + PT SGK+ AL + + K+ Y P++ L E FD LG +
Sbjct: 59 RHVILNT-PTGSGKSLVALAMHFRALAQGKRAYYTCPIKALVSEKFFDLCRVLGPERVGM 117
Query: 348 LTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSDACRGYAWTRALL 400
LTG + L + I CT E+++ + D A++DE +D RG AW LL
Sbjct: 118 LTG-DAALNHDAPIICCTAEVLANLALREGDQAKVDYAIVDEFHYFADRDRGIAWQIPLL 176
Query: 401 GLMADEIHL----CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE--------AKTL 448
L L GD + +++ +G E+ ++ +P+ +E +T+
Sbjct: 177 TLPQTTFMLMSATLGDTDPFE--KELHQRSGREVSVVRSDQ-RPVPLEFSYSETPIHETI 233
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMA-------------------------------IE 477
+ RS VV F++RE E+ A I+
Sbjct: 234 EEIVEGQRSPVYVVNFTQREAAELAQALTSIKLIDRDRRQKILDAIRGVRFDSVYGKDIQ 293
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537
+ + + L P+ R L Q+ +V+ +D +G+G+N+ IR V+F L K
Sbjct: 294 RFIKAGVGLHHAGLLPKYRLLIERLA--QEGLLEVICGTDTLGVGVNVPIRTVLFSKLCK 351
Query: 538 YNGDKIIPVPGSQVKQIAGRAGRRG 562
Y+G+ + KQIAGRAGR+G
Sbjct: 352 YDGESTKILAVRDFKQIAGRAGRKG 376
>gi|379735837|ref|YP_005329343.1| Superfamily II RNA helicase [Blastococcus saxobsidens DD2]
gi|378783644|emb|CCG03312.1| Superfamily II RNA helicase [Blastococcus saxobsidens DD2]
Length = 853
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 137/342 (40%), Gaps = 66/342 (19%)
Query: 302 PTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ A ++G Y +P++ L E F + + +LTG + +
Sbjct: 70 PTGSGKSLVATGAQYAALAAGRRGYYTAPIKALVSEKFFALCGIFGAANVGMLTG-DASV 128
Query: 356 VPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ IACT E+++ D + V+DE D RG+AW LL L +
Sbjct: 129 NAGAPIIACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPKAQFL 188
Query: 409 L----CGDPSVL--DVVRKICSETG------DELHEQHYERFKPLVVEAKTLLGDLRNVR 456
L GD + L D+ R+ T + HY P+ +T+ L +
Sbjct: 189 LMSATLGDVTSLREDLTRRTGRPTALVANAVRPVPLHHYYATTPM---HETIQELLDTQQ 245
Query: 457 SGDCVVAFSRREIFEVKMAI-------------------------------EKHTNHHCC 485
+ VV F++ E A+ + H
Sbjct: 246 APVYVVHFTQASALERAQALMSVNVATKEQKAAIAEMIGGFRFSSAFGTTLSRLVRHGIG 305
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 306 VHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTRTRL 363
Query: 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + QIAGRAGR G T+ ++ ++ +E LKQ
Sbjct: 364 LQVREFHQIAGRAGRAGY----DTAGTVMVEAPEHEVENLKQ 401
>gi|86740957|ref|YP_481357.1| DEAD/DEAH box helicase [Frankia sp. CcI3]
gi|86567819|gb|ABD11628.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
Length = 885
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 128/316 (40%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTY----NALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ ++ Y +P++ L E F + A+ ++TG + +
Sbjct: 91 PTGSGKSLVAAGAHFAALAARRRTFYTAPIKALVSEKFFALCAMFGAAQVGMMTG-DASV 149
Query: 356 VPFSNHIACTVEMVSTDEMYD-VA------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + D VA V+DE +D RG+AW LL L +
Sbjct: 150 NDTAPIICCTAEVLANIALRDGVAADVGQVVMDEFHYYADPDRGWAWQVPLLELPHTQFI 209
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQH----YERFKPLVVEAKTLLGDLRNVRSG 458
L GD S+ D+ R+ ET Q + RF + +G+L
Sbjct: 210 LMSATLGDVSLFEADLTRRTGRETTVVRSAQRPVPLFYRF--VTTPMHETIGELLETHQA 267
Query: 459 DC-VVAFSRREIFEVKMAI-------------------------------EKHTNHHCCV 486
VV F++ + E A+ + H V
Sbjct: 268 PVYVVHFTQAQALERAQALMSVNVSTRAEKDAIARTIGNFRFTAGFGKVLSRLVRHGIGV 327
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L Q V+ +D +G+G+N+ IR VVF SLSKY+G ++ +
Sbjct: 328 HHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFTSLSKYDGSRVRLL 385
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 386 SAREFHQIAGRAGRAG 401
>gi|452960750|gb|EME66065.1| dead/deah box helicase [Rhodococcus ruber BKS 20-38]
Length = 834
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 126/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKL 355
PT SGK+ AL K+ Y +P++ L E F + G ++TG + +
Sbjct: 53 PTGSGKSMVALGAHFFALATGKRTFYTAPIKALVSEKFFALCEVFGADRVGMMTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
P + I T E+V+ + + A V+DE S+ RG+AW L+ L +
Sbjct: 112 NPGAPIICATAEIVANLALREGADSDIGQVVMDEFHFYSEPDRGWAWQVPLVELPRAQFL 171
Query: 409 L----CGDPSVL--DVVRKICSET---------------------GDELHEQHYERFKPL 441
L GD + L D+ R+ T G+E+ E P+
Sbjct: 172 LMSATLGDVTFLQKDLTRRTGRPTTEVSGSERPVPLSFTYSQKPIGEEIEELVTTHQAPV 231
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
V T L ++ V SR E + AI + H V +
Sbjct: 232 YVVHFTQAAALERAQALTSVSMCSREEKDAIAEAIGAFRFSTGFGRTLSRLVRHGIGVHH 291
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L QD V+ +D +G+G+N+ IR V+ L+K++G + +
Sbjct: 292 AGMLPKYRRLVERLA--QDGLLKVICGTDTLGVGINVPIRTVLLTGLTKFDGTRTRQLKA 349
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 REFHQIAGRAGRAG 363
>gi|407275580|ref|ZP_11104050.1| dead/deah box helicase [Rhodococcus sp. P14]
Length = 834
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKL 355
PT SGK+ AL K+ Y +P++ L E F + G ++TG + +
Sbjct: 53 PTGSGKSMVALGAHFFALATGKRTFYTAPIKALVSEKFFALCEVFGADRVGMMTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
P + + T E+V+ + + A V+DE S+ RG+AW L+ L +
Sbjct: 112 NPGAPIVCATAEIVANLALREGADSDIGQVVMDEFHFYSEPDRGWAWQVPLVELPRAQFL 171
Query: 409 L----CGDPSVL--DVVRKICSET---------------------GDELHEQHYERFKPL 441
L GD + L D+ R+ T G+E+ E P+
Sbjct: 172 LMSATLGDVTFLQKDLTRRTGRPTTEVSGSERPVPLSFTYSQKPIGEEIEELVTTHQAPV 231
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
V T L ++ V SR E + AI + H V +
Sbjct: 232 YVVHFTQAAALERAQALTSVSMCSREEKEAIAEAIGAFRFSTGFGRTLSRLVRHGIGVHH 291
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L QD V+ +D +G+G+N+ IR V+ L+K++G + +
Sbjct: 292 AGMLPKYRRLVERL--AQDGLLKVICGTDTLGVGINVPIRTVLLTGLTKFDGTRTRQLKA 349
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 REFHQIAGRAGRAG 363
>gi|271967476|ref|YP_003341672.1| ATP-dependent helicase [Streptosporangium roseum DSM 43021]
gi|270510651|gb|ACZ88929.1| putative ATP-dependent helicase [Streptosporangium roseum DSM
43021]
Length = 830
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 137/320 (42%), Gaps = 68/320 (21%)
Query: 302 PTNSGKT-------YNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQE 352
PT SGK+ + AL R + + Y +P++ L E F + AL ++TG +
Sbjct: 55 PTGSGKSLVAAGAHFAALTRDV---RTFYTAPIKALVSEKFFDLCALFGTENVGMMTG-D 110
Query: 353 KKLVPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMAD 405
+ P + I CT E+++ + D A V+DE ++ RG+AW LL L
Sbjct: 111 ASVNPGAPIICCTAEILANVALRDGAKADIGQVVMDEFHFYAEPDRGWAWQVPLLELPDV 170
Query: 406 EIHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAK------TLLGDLR 453
+ L GD S D+ R+ T ++ ER PLV + TL L
Sbjct: 171 QFILMSATLGDVSRFEEDLTRRTGRSTA---VVKNAERPVPLVYSYRMTPLHETLEEMLT 227
Query: 454 NVRSGDCVVAFSR-------REIFEVKM------------------------AIEKHTNH 482
++ VV F++ + + + M A+ + H
Sbjct: 228 TNQAPVYVVHFTQAAAMERAQALMSINMSTKTEKEAIAALIGNFRFTTRFGRALSRLVRH 287
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +LSKY+G+K
Sbjct: 288 GIGVHHAGMLPKYRRLVERLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALSKYDGNK 345
Query: 543 IIPVPGSQVKQIAGRAGRRG 562
+ + + QIAGRAGR G
Sbjct: 346 VRRLRAREFHQIAGRAGRAG 365
>gi|389864906|ref|YP_006367147.1| superfamily II RNA helicase [Modestobacter marinus]
gi|388487110|emb|CCH88667.1| Superfamily II RNA helicase [Modestobacter marinus]
Length = 868
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 128/320 (40%), Gaps = 68/320 (21%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEK 353
PT SGK+ A A + Y +P++ L E F + GV+ +LTG +
Sbjct: 85 PTGSGKSLVATGAQYAALASDRVSFYTAPIKALVSEKFFAL--CGVFGAANVGMLTG-DA 141
Query: 354 KLVPFSNHIACTVEMVST-------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
+ + IACT E+++ D + V+DE D RG+AW L+ L +
Sbjct: 142 SVNADAPIIACTAEVLANIALREGPDADIGLVVMDEFHFYGDPDRGWAWQVPLIELPKAQ 201
Query: 407 IHL----CGDPSVL--DVVRKICSETGDELHEQ------HYERFKPLVVEAKTLLGDLRN 454
L GD S L D+ R+ T H + HY P+ + +L +
Sbjct: 202 FLLMSATLGDVSTLREDLTRRTGRPTALVAHAERPVPLHHYYATTPM----HETIDELLS 257
Query: 455 VRSGDC-VVAFSRREIFEVKMAI---------EKHT----------------------NH 482
R VV F++ E A+ EK H
Sbjct: 258 TRQAPVYVVHFTQASALERAQALMSVNVSTKEEKQAIADQIGGFRFSSAFGTTLSRLVRH 317
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 318 GIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTR 375
Query: 543 IIPVPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 376 TRLLNAREFHQIAGRAGRAG 395
>gi|392942903|ref|ZP_10308545.1| superfamily II RNA helicase [Frankia sp. QA3]
gi|392286197|gb|EIV92221.1| superfamily II RNA helicase [Frankia sp. QA3]
Length = 861
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 127/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTY----NALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ ++ Y +P++ L E F + A+ ++TG + +
Sbjct: 67 PTGSGKSLVAAGAHFAALAAGRRTFYTAPIKALVSEKFFALCAMFGAANVGMMTG-DASV 125
Query: 356 VPFSNHIACTVEMVSTDEMYD-VA------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + D VA V+DE +D RG+AW LL L +
Sbjct: 126 NDTAPIICCTAEVLANIALRDGVAADVGQVVMDEFHYYADPERGWAWQVPLLELPGTQFV 185
Query: 409 L----CGDPSVL--DVVRKICSETG-----------------DELHEQHYERFK----PL 441
L GD S+ D+ R+ T LHE E + P+
Sbjct: 186 LMSATLGDVSMFEADLTRRTGRPTAVVRSAQRPVPLFYRFVTTALHETIGELLETHQAPV 245
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
V T L ++ V SR E + I + H V +
Sbjct: 246 YVVHFTQAQALERAQALMSVNVSSRAEKDAIAATIGNFRFAAGFGKVLSRLVRHGIGVHH 305
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR VVF SLSKY+G ++ +
Sbjct: 306 AGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFTSLSKYDGTRVRLLSA 363
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 364 REFHQIAGRAGRAG 377
>gi|383456753|ref|YP_005370742.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380733025|gb|AFE09027.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
Length = 853
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 139/328 (42%), Gaps = 63/328 (19%)
Query: 291 VMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKVN-ALGVY- 344
++ K ++ PT SGK+ A+ + E K Y P++ L E F ++ A G
Sbjct: 54 LLSDKHLFLKTPTGSGKSLVAMALHFKAMAEGKVSFYTCPIKALVNEKFFALSKAFGPEN 113
Query: 345 CSLLTGQEK--KLVPFSNHIACTVEMVSTDEMYDVA------VIDEIQMMSDACRGYAWT 396
+LTG + P + CT E++S + D + V+DE SD RG AW
Sbjct: 114 VGMLTGDASINREAPI---LCCTAEILSNLALRDASARVDAVVMDEFHYYSDKERGVAWQ 170
Query: 397 RALLGLMADEIHL----CGDPSVLDVVRKICSETGDELHE-QHYERFKPL------VVEA 445
LL L + L GD V++ + + TG E+ + ER PL V
Sbjct: 171 IPLLALPKTQFLLMSATLGDTHVIE--QSLEKLTGREVATVRSSERPVPLDFDYREVPLH 228
Query: 446 KTLLGDLRNVRSGDCVVAFSRR------------------EIFEVKMAI----------- 476
+T+ + + +V F++R E E++ A+
Sbjct: 229 ETIQDLIARGKYPVYLVNFTQRAAAEQAQNLMSVDFNTKEEKEEIRQALLDAPFDTPYGK 288
Query: 477 --EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
++ H + + L P+ R L Q V+ +D +G+G+N+ IR V+F
Sbjct: 289 DFQRFLRHGIGMHHAGLLPKYRLLVEKLA--QQGLLKVISGTDTLGVGVNIPIRTVLFTQ 346
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
L K+NG+K+ + KQIAGRAGR+G
Sbjct: 347 LFKFNGEKLATLSVRDFKQIAGRAGRKG 374
>gi|315604717|ref|ZP_07879780.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313729|gb|EFU61783.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 917
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 133/339 (39%), Gaps = 66/339 (19%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFD 336
PH ++ + PT SGK+ AL + Y +PL+ L E FD
Sbjct: 41 PHQEEALVEILAGNHVIAATPTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFD 100
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V+ G ++TG + L + I CT E+++ + D+ V+DE D
Sbjct: 101 LVSLFGADNVGMVTG-DVSLNADAPIICCTAEILANQSLREGPSLDADMIVMDEFHFYGD 159
Query: 389 ACRGYAWTRALLGLMADEI----HLCGDPSVLDVVRKICSETG-DELHEQHYERFKPL-- 441
RG+AW LL L A ++ GD S + R TG D ER PL
Sbjct: 160 RQRGWAWQVPLLELTAPQVVAMSATLGDTSHFE--RSWKERTGRDVALVDDAERPVPLEF 217
Query: 442 --VVE-----AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHT-------------- 480
VV+ + LLG+ R +V FS+R+ + ++ +
Sbjct: 218 DYVVDRLPDTVERLLGE---GRWPVYIVHFSQRDAVATAQSFDRSSLISADQKKEIGAQL 274
Query: 481 -----------------NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523
V + + P RR L Q ++ +D +G+G+
Sbjct: 275 AGVSFTKGFGQTLKSLLAQGIGVHHAGMLPRYRRLVERL--TQAGLLPIVCGTDTLGVGI 332
Query: 524 NLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
N+ IR V+ SL KY+G ++ V + QIAGRAGR G
Sbjct: 333 NVPIRTVLMTSLVKYDGRRMRHVSAREFHQIAGRAGRAG 371
>gi|291443066|ref|ZP_06582456.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998]
gi|60650895|gb|AAX31520.1| putative ATP-dependent helicase [Streptomyces roseosporus NRRL
11379]
gi|291346013|gb|EFE72917.1| ATP-dependent helicase [Streptomyces roseosporus NRRL 15998]
Length = 857
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 73 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 131
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 132 NADAPVICCTAEVLASIALRDGKYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 191
Query: 409 L----CGDPSVL--DVVRKICSET-----GDELHEQHYE-RFKPLVVEAKTLLGDLRNVR 456
L GD S+ D+ R+ T YE RF P + E T L D R +
Sbjct: 192 LMSATLGDVSMFEKDLTRRTGRPTSVVRSATRPVPLSYEYRFTP-ITETLTELLDTR--Q 248
Query: 457 SGDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCC 485
S +V F++ + + + M + ++ H
Sbjct: 249 SPVYIVHFTQAAAVERAQSLMSINMCTKEEKEKIADLIGSFRFTTKFGQNLSRYVRHGIG 308
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++
Sbjct: 309 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRT 366
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 367 LRAREFHQIAGRAGRAG 383
>gi|239986124|ref|ZP_04706788.1| putative ATP-dependent helicase [Streptomyces roseosporus NRRL
11379]
Length = 837
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 53 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 112 NADAPVICCTAEVLASIALRDGKYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 171
Query: 409 L----CGDPSVL--DVVRKICSET-----GDELHEQHYE-RFKPLVVEAKTLLGDLRNVR 456
L GD S+ D+ R+ T YE RF P + E T L D R +
Sbjct: 172 LMSATLGDVSMFEKDLTRRTGRPTSVVRSATRPVPLSYEYRFTP-ITETLTELLDTR--Q 228
Query: 457 SGDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCC 485
S +V F++ + + + M + ++ H
Sbjct: 229 SPVYIVHFTQAAAVERAQSLMSINMCTKEEKEKIADLIGSFRFTTKFGQNLSRYVRHGIG 288
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++
Sbjct: 289 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRT 346
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 347 LRAREFHQIAGRAGRAG 363
>gi|420153921|ref|ZP_14660853.1| PF12029 domain protein [Actinomyces massiliensis F0489]
gi|394756331|gb|EJF39432.1| PF12029 domain protein [Actinomyces massiliensis F0489]
Length = 911
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 149/378 (39%), Gaps = 71/378 (18%)
Query: 241 LGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHC 300
L P+DD + P V E+ + R PH + +++ + +
Sbjct: 25 LIPADDPERVPEPEEVYLAFSEWAESTGRP---------LYPHQDEALSEILQGRHVIAA 75
Query: 301 GPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKK 354
PT SGK+ AL + Y +PL+ L E F+ V G ++TG +
Sbjct: 76 TPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFELVRLFGADNVGMVTG-DTS 134
Query: 355 LVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSDACRGYAWTRALLGLMADEI 407
+ + I CT E+++ + D V+DE +D RG+AW LL L ++
Sbjct: 135 INTAAPIICCTAEILANQSLREGEALDVDSVVMDEFHYYADPQRGWAWQVPLLELPQAQM 194
Query: 408 HL----CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL---LGDL--RNVRSG 458
L GD S L + TG E+ + +P+ +E + + +GDL R V+ G
Sbjct: 195 VLMSATLGDVSFL--AADMRERTGREVAIVD-DAVRPVPLEMEYVVEPIGDLLQRLVQQG 251
Query: 459 DC---VVAFSRREIFE-------------------------------VKMAIEKHTNHHC 484
VV FS++E E + +
Sbjct: 252 KAPVYVVHFSQKEAIERAASLLSVDLGAKARKAELAAALGDFRFGGGFGATLSRLLRRGI 311
Query: 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKII 544
V + + P RR L + V+ +D +G+G+N+ IR VV SL K++G K
Sbjct: 312 GVHHAGMLPRYRRLVEKLA--RLGLLSVICGTDTLGVGINVPIRSVVLTSLVKFDGAKER 369
Query: 545 PVPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 370 HLTAREFHQIAGRAGRAG 387
>gi|325068419|ref|ZP_08127092.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
Length = 463
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 139/337 (41%), Gaps = 62/337 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH + +++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 48 PHQDEALSEILEDRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 107
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V G ++TG + + + I CT E+++ + D ++DE +D
Sbjct: 108 LVRLFGADNVGMVTG-DTSINAAAPIICCTAEILANQSLREGEDMDVDCVIMDEFHYYAD 166
Query: 389 ACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
RG+AW LL L ++ L GD S VR + TG E+ + +P+ +E
Sbjct: 167 PQRGWAWQVPLLELPQAQMVLLSATLGDVSFF--VRDLRERTGREVAVVD-DAVRPVPLE 223
Query: 445 AKTL---LGDLRNVRSGD-----CVVAFSRREIFE-------VKMA-------------- 475
+ + +G+L G VV FS++E E V +A
Sbjct: 224 MEYVVEPIGELLQRLVGQDKAPVYVVHFSQKEAVERATSLLSVDLASKSRKAEIVKALGD 283
Query: 476 ----------IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+ + V + + P RR L ++ V+ +D +G+G+N+
Sbjct: 284 FRFGGGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLA--REGLLSVICGTDTLGVGINV 341
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR VV SL K++G K + + QIAGRAGR G
Sbjct: 342 PIRSVVMTSLVKFDGSKERHLTAREFHQIAGRAGRAG 378
>gi|115379713|ref|ZP_01466790.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
[Stigmatella aurantiaca DW4/3-1]
gi|310820840|ref|YP_003953198.1| dead/deah box helicase [Stigmatella aurantiaca DW4/3-1]
gi|115363279|gb|EAU62437.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
[Stigmatella aurantiaca DW4/3-1]
gi|309393912|gb|ADO71371.1| DEAD/DEAH box helicase [Stigmatella aurantiaca DW4/3-1]
Length = 846
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 136/340 (40%), Gaps = 63/340 (18%)
Query: 302 PTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQEK-- 353
PT SGK+ A+ + E K Y P++ L E F + +A G +LTG
Sbjct: 64 PTGSGKSLVAMALHFKAMAEGKVSYYTCPIKALVNEKFFALCDAFGPENVGMLTGDASIN 123
Query: 354 KLVPFSNHIACTVEMVSTDEM------YDVAVIDEIQMMSDACRGYAWTRALLGLMADEI 407
+ P I CT E+++ M D V+DE SD RG AW LLGL
Sbjct: 124 REAPI---ICCTAEILANMAMRDSRAPVDYVVMDEFHYYSDRERGTAWQLPLLGLQNTTF 180
Query: 408 HL----CGDPSVL----------DVV-----RKICSETGDELHEQHYERFKPLVVEAKTL 448
+ GD ++ DVV ++ D +E + LV K
Sbjct: 181 LMMSATLGDTHIIEEGLKKLTGKDVVSVRSAKRPVPLDFDYRETPLHETIQDLVARGKYP 240
Query: 449 L-----------GDLRNVRSGDCVVAFSRREIFEVKMA----------IEKHTNHHCCVI 487
+ +N+ S D + I + M ++ H +
Sbjct: 241 IYLVNFTQRAAAEQAQNLMSVDFCTKEEKEAIRQALMEAPFDTPYGKEFQRFLRHGVGMH 300
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+ L P+ R L Q V+ +D +G+G+N+ IR V+F L K+NG+K+ +
Sbjct: 301 HAGLLPKYRLLVEKLA--QSGHLKVISGTDTLGVGVNIPIRTVLFTQLFKFNGEKLATLS 358
Query: 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+QIAGRAGR+G Y D + D+++E +KQ
Sbjct: 359 VRDFQQIAGRAGRKG--YDDEGSVVAQAP--DHVVENIKQ 394
>gi|365828092|ref|ZP_09369923.1| hypothetical protein HMPREF0975_01706 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365264274|gb|EHM94084.1| hypothetical protein HMPREF0975_01706 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 896
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 136/337 (40%), Gaps = 62/337 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH + +++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 45 PHQDEALSEILQDRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 104
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V G ++TG + + + I CT E+++ + D V+DE +D
Sbjct: 105 LVRLFGADNVGMVTG-DTSINAAAPIICCTAEILANQSLREGEDMDVDCVVMDEFHYYAD 163
Query: 389 ACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
RG+AW LL L ++ L GD S VR + TG E+ + +P+ +E
Sbjct: 164 PQRGWAWQVPLLELPQAQMVLLSATLGDVSFF--VRDLRERTGREVAVVD-DAVRPVPLE 220
Query: 445 AKTL---LGDLRNVRSGD-----CVVAFSRREIFE------------------------- 471
+ + +G+L G VV FS++E E
Sbjct: 221 MEYVVEPIGELLQRLVGQDKAPVYVVHFSQKEAIERATSLLSVDLVPKSRKADVARALGD 280
Query: 472 ------VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+ + V + + P RR L ++ V+ +D +G+G+N+
Sbjct: 281 FRFGGGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLAHE--GLLSVICGTDTLGVGINV 338
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR VV SL K++G K + + QIAGRAGR G
Sbjct: 339 PIRSVVMTSLVKFDGSKERHLTAREFHQIAGRAGRAG 375
>gi|256379281|ref|YP_003102941.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255923584|gb|ACU39095.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 827
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 125/314 (39%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKKL 355
PT SGK+ AL A ++ Y +P++ L E F + G ++TG + +
Sbjct: 53 PTGSGKSMVALGAHFAAVAQGRRTFYTAPIKALVSEKFFALIEVFGADKVGMMTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + D + V+DE S+ RG+AW L+ L +
Sbjct: 112 NETAPIICCTAEILANMALRDGADADVGIVVMDEFHFYSEPDRGWAWQVPLIELPKAQFV 171
Query: 409 L----CGDPSVL--DVVRKICSETG-----------------DELHEQHYERF----KPL 441
L GD + D+ R+ T LHE E P+
Sbjct: 172 LMSATLGDVTFFEKDLTRRTGRTTAVVRSAERPVPLNFQYVTTPLHETIEELLHGNEAPV 231
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
V T L +S V +R E + I + H V +
Sbjct: 232 YVVHFTQASALERAQSLMSVNVATRAEKDAIATTIGRFRFTSGFGKTLSRLVRHGIGVHH 291
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR V+F +LSKY+G + +
Sbjct: 292 AGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVLFTALSKYDGTRTRHLKA 349
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 REFHQIAGRAGRAG 363
>gi|336177523|ref|YP_004582898.1| DEAD/DEAH box helicase [Frankia symbiont of Datisca glomerata]
gi|334858503|gb|AEH08977.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 833
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 58/315 (18%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ A A ++ Y +P++ L E F + A ++TG + +
Sbjct: 53 PTGSGKSLVATGAHFAAMAHGRRSFYTAPIKALVSEKFFALCATFGPGNVGMMTG-DAGV 111
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + D A V+DE +D RG+AW LL L AD
Sbjct: 112 NETAPVICCTAEILANIALRDAAAAGVGQVVMDEFHFYADPDRGWAWQVPLLEL-ADTQF 170
Query: 409 LCGDPSVLDVVR---KICSETG---------------------DELHEQHYERFK----P 440
+ ++ DV R + TG LHE E P
Sbjct: 171 VLMSATLGDVRRFEEDLTRRTGRPTAVVRSAQRPVPLFHHYVTTALHETLEELLSTHQAP 230
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVI 487
+ V T L +S + SR E + I + H V
Sbjct: 231 VYVVHFTQASALERAQSLMSINVCSRAEKDAIARTIGGFRFAAGFGRTLSRLVRHGIGVH 290
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+ + P+ RR L Q+ ++ +D +G+G+N+ IR VVF +LSKY+G + +
Sbjct: 291 HAGMLPKYRRLVEQLA--QEGLLKIICGTDTLGVGINVPIRTVVFTALSKYDGTRTRHLS 348
Query: 548 GSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 349 AREFHQIAGRAGRAG 363
>gi|111223192|ref|YP_713986.1| ATP-dependent helicase [Frankia alni ACN14a]
gi|111150724|emb|CAJ62425.1| putative ATP-dependent helicase [Frankia alni ACN14a]
Length = 878
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 126/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTY----NALQRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ ++ Y +P++ L E F + A+ ++TG + +
Sbjct: 67 PTGSGKSLVAAGAHFAALAAGRRTFYTAPIKALVSEKFFALCAMFGAANVGMMTG-DASV 125
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ + CT E+++ + D V+DE +D RG+AW LL L +
Sbjct: 126 NDTAPIVCCTAEVLANIALRDGVDADVGQVVMDEFHYYADPERGWAWQVPLLELPRTQFV 185
Query: 409 L----CGDPSVL--DVVRKICSETG-----------------DELHEQHYERFK----PL 441
L GD S+ D+ R+ T LHE E + P+
Sbjct: 186 LMSATLGDVSMFEADLTRRTGRPTAVVRSAQRPVPLFYRFVTTPLHETIGELLETHQAPV 245
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
V T L ++ V SR E ++ I + H V +
Sbjct: 246 YVVHFTQAQALERAQALMSVNVSSRAEKEQIAAMIGRFRFAAGFGKVLSRLVRHGIGVHH 305
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR VVF SLSKY+G ++ +
Sbjct: 306 AGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFTSLSKYDGTRVRLLSA 363
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 364 REFHQIAGRAGRAG 377
>gi|385653278|ref|ZP_10047831.1| putative ATP-dependent helicase [Leucobacter chromiiresistens JG
31]
Length = 863
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 133/320 (41%), Gaps = 68/320 (21%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKKL 355
PT +GK+ A+ E ++ +Y +P++ L E FD V+ G ++TG + +
Sbjct: 56 PTGTGKSLVAIGAHFIALAEGRRTVYTAPIKALVSEKFFDLVDVFGADRVGMVTG-DTSI 114
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
P + + CT E+++ + D + V+DE ++ RG+AW LL LM D
Sbjct: 115 NPDAPILCCTAEILANLAIRDRSAGGITQVVMDEFHFYAEPDRGWAWQVPLL-LMNDAQF 173
Query: 409 LCGDPSVLDVVRKICSETGDELHEQH---------YERFKPLV----------------- 442
L ++ DV SE D+L + ER PL
Sbjct: 174 LLMSATLGDV-----SELADDLSRRTGRDTAIVTGVERPVPLTFSYEVAPAHEVVERLVE 228
Query: 443 ----------------VEAKTLLGDLRNV-RSGDCVVAFSRREI-FEVKMA--IEKHTNH 482
VE L +R V R+G +A + + F + +
Sbjct: 229 DRQTPAYLVHFNQSHAVEQAQALSSIRIVDRAGRDEIAAAIGDFRFSTGFGSTLSRLVRS 288
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
V + + P RR L Q V+ +D +G+G+N+ IR VV +L+K++G+K
Sbjct: 289 GIGVHHAGMLPRYRRLVEQLA--QRGLLRVICGTDTLGVGINVPIRTVVITALTKFDGEK 346
Query: 543 IIPVPGSQVKQIAGRAGRRG 562
+ + + QIAGRAGR G
Sbjct: 347 MRRLSAREFHQIAGRAGRAG 366
>gi|258654887|ref|YP_003204043.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258558112|gb|ACV81054.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 861
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 119/316 (37%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVYCSLLTGQEKKLV 356
PT SGK+ A ++ Y +P++ L E FD V G + + +
Sbjct: 72 PTGSGKSLVATAALFTGLATGRRSYYTAPIKALVSEKFFDLVEIFGASAVGMITGDSAVN 131
Query: 357 PFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGL------- 402
+ I CT E+++ D V V+DE D RG+AW LL L
Sbjct: 132 AAAPIICCTAEILAGVALRGGADADAGVVVMDEFHYYGDPQRGWAWQVPLLELPRAQFVL 191
Query: 403 ---MADEIHLCGD----------PSVLDVVRKI----------CSETGDELHEQHYERFK 439
E+ D + DV R + +ET +L E
Sbjct: 192 MSATLGEVKFFADDLTRRTGRSTAVITDVPRPVPLHFSYTLVPLTETLQDLLETQR---A 248
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCV 486
P+ + T L ++ + +R E E+ I + H V
Sbjct: 249 PVYIVHFTQAAALERAQALSSIAVATRAERDEIAEVIGEFRFSPGFGRTLSRLVRHGIGV 308
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L Q V+ +D +G+G+N+ IR V+ +LSKY+G + +
Sbjct: 309 HHAGMLPKYRRLVEKLA--QSGLLKVICGTDTLGVGINVPIRTVLMTALSKYDGRRTRLL 366
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 367 SAREFHQIAGRAGRAG 382
>gi|354614602|ref|ZP_09032454.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353221050|gb|EHB85436.1| DEAD/DEAH box helicase domain protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 846
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 128/321 (39%), Gaps = 70/321 (21%)
Query: 302 PTNSGKTYNAL-QRFMEAKKGI---YCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKKL 355
PT SGK+ A+ F G+ Y +P++ L E FD V+ G ++TG + +
Sbjct: 60 PTGSGKSLVAVGAHFAALADGVRSFYTAPIKALVSEKFFDLVDTFGADNVGMMTG-DSSV 118
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
P + I CT E+++ + D A V DE +D RG+AW LL L +
Sbjct: 119 NPDAPIICCTAEILANLALRDGAEADVGQVVADEFHFYADPDRGWAWQVPLLELPEAQFV 178
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKT----------LLGDL 452
L GD S D+ R+ +T ER PL T L G L
Sbjct: 179 LMSATLGDVSFFESDLTRRTGRDTA---VVTSAERPVPLTFRYATTPMHETVSELLHGGL 235
Query: 453 RNVRSGDCVVAFSRREIFEVKMAI-------------------------------EKHTN 481
V VV FS+ E A+ +
Sbjct: 236 APV----YVVHFSQAAAVERAQALMSINVCSRAEKDALAEAIGDFRFSAGFGKTLSRLVR 291
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
H V + + P+ RR L Q ++ +D +G+G+N+ IR VVF +L+K++G
Sbjct: 292 HGIGVHHAGMLPKYRRLVEQLA--QAGLLKIICGTDTLGVGINVPIRTVVFSALTKFDGT 349
Query: 542 KIIPVPGSQVKQIAGRAGRRG 562
+ + + Q+AGRAGR G
Sbjct: 350 RQRHLKAREFHQVAGRAGRAG 370
>gi|326773708|ref|ZP_08232991.1| DNA or RNA helicase superfamily II [Actinomyces viscosus C505]
gi|326636938|gb|EGE37841.1| DNA or RNA helicase superfamily II [Actinomyces viscosus C505]
Length = 896
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 139/337 (41%), Gaps = 62/337 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH + +++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 45 PHQDEALSEILEDRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 104
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V G ++TG + + + I CT E+++ + D ++DE +D
Sbjct: 105 LVRLFGADNVGMVTG-DTSINAAAPIICCTAEILANQSLREGEDMDVDCVIMDEFHYYAD 163
Query: 389 ACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
RG+AW LL L ++ L GD S VR + TG E+ + +P+ +E
Sbjct: 164 PQRGWAWQVPLLELPQAQMVLLSATLGDVSFF--VRDLRERTGREVAVID-DAVRPVPLE 220
Query: 445 AKTL---LGDLRNVRSGD-----CVVAFSRREIFE-------VKMA-------------- 475
+ + +G+L G VV FS++E E V +A
Sbjct: 221 MEYVVEPIGELLQRLVGQDKAPVYVVHFSQKEAVERATSLLSVDLASKSRKAEIVKALGD 280
Query: 476 ----------IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+ + V + + P RR L ++ V+ +D +G+G+N+
Sbjct: 281 FRFGGGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLA--REGLLSVICGTDTLGVGINV 338
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR VV SL K++G K + + QIAGRAGR G
Sbjct: 339 PIRSVVMTSLVKFDGSKERHLTAREFHQIAGRAGRAG 375
>gi|411005222|ref|ZP_11381551.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces
globisporus C-1027]
Length = 837
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 133/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 53 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 112 NADAPVICCTAEVLASIALRDGKYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 171
Query: 409 L----CGDPSVL--DVVRKICSET-----GDELHEQHYE-RFKPLVVEAKTLLGDLRNVR 456
L GD ++ D+ R+ T YE RF P + E T L D R +
Sbjct: 172 LMSATLGDVAMFEKDLTRRTGRPTSVVRSATRPVPLSYEYRFTP-ITETLTELLDTR--Q 228
Query: 457 SGDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCC 485
S +V F++ + + + M + ++ H
Sbjct: 229 SPVYIVHFTQAAAVERAQSLMSINMCTKEEKEKIADLIGSFRFTTKFGQNLSRYVRHGIG 288
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++
Sbjct: 289 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRT 346
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 347 LRAREFHQIAGRAGRAG 363
>gi|237785666|ref|YP_002906371.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237758578|gb|ACR17828.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 850
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 130/316 (41%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVFDKV-NALGVY-CSLLTGQEKKL 355
PT SGK+ AL A ++ Y +P++ L E F + +A G ++TG
Sbjct: 59 PTGSGKSLVALYAHFFALAHNRRTFYTAPIKALVNEKFFALCDAFGAKNVGMMTGD--AT 116
Query: 356 VPFSNHIAC-TVEMVST-------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEI 407
V I C T E+V+ D D V+DE SD RG+AW LL L + +
Sbjct: 117 VNGKAPIICATAEIVANIALRDGPDAEIDQVVMDEFHYYSDPQRGWAWQVPLLELPSTQF 176
Query: 408 HL----CGDPSVLDVVRKICSETGDELHEQHYERFKPL-----VVEAKTLLGDL-RNVRS 457
L GD + L +E +L + ER PL +G+L ++ ++
Sbjct: 177 ILMSATLGDTTFLRKDLSARTERDTDLVDG-TERPVPLSFSYVYTPIHETIGELIKDDKA 235
Query: 458 GDCVVAFSRREIFEVKMAIEKHTN-------------------------------HHCCV 486
+V FS+RE E A++ H V
Sbjct: 236 PIYIVHFSQREAAERAQALKGHVKISAETKEKIRETIGDFRFSSAFGRQLSSLVRQGIGV 295
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L Q V+ +D +G+G+N+ IR V+F L+KY+G + +
Sbjct: 296 HHAGMLPKYRRLVEKLA--QAGLLTVICGTDTLGVGINVPIRTVLFSGLAKYDGQRHRVL 353
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 354 RSREFHQIAGRAGRAG 369
>gi|269219749|ref|ZP_06163603.1| putative ATP-dependent helicase [Actinomyces sp. oral taxon 848
str. F0332]
gi|269210991|gb|EEZ77331.1| putative ATP-dependent helicase [Actinomyces sp. oral taxon 848
str. F0332]
Length = 989
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 122/315 (38%), Gaps = 58/315 (18%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAME-VFDKVNALGVYCSLLTGQEKKLV 356
PT SGK+ AL A + Y +PL+ L E F+ + A G + + + +
Sbjct: 104 PTGSGKSMVALAAIFTALAHGRSAYYTAPLKALVSEKFFELIAAFGAHNVGMVTGDSSIN 163
Query: 357 PFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
+ + T E+V+ + D V + DE D RG+AW LL L + + L
Sbjct: 164 AGAPIVCATAEIVANIALRDGDAADIGVLIADEFHFYGDPQRGWAWQVPLLELASTQHVL 223
Query: 410 C----GDPSVLDVVRKICSETGDELHE-QHYERFKPLVVE-AKTLLGDL-----RNVRSG 458
GD S L + TG ER PL ++ LG++ R+
Sbjct: 224 LSATLGDTSFL--AEDLSKRTGRNTSVVDRAERPVPLAFSYSREPLGEVVLELVHTHRAP 281
Query: 459 DCVVAFSRREIFEVKMAI-------------------------------EKHTNHHCCVI 487
VV FS++E A+ K V
Sbjct: 282 VYVVHFSQKEAVSQAQALLPINLTTKAERELIAKEIGDFRFGPGFGKTLSKLLRSGIGVH 341
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+ L P RR L Q V+ +D +G+G+N+ IR V+ SLSK++G + +
Sbjct: 342 HAGLLPRYRRLVERL--TQAGRLKVVCGTDTLGVGINVPIRTVLLTSLSKFDGTRSRHLS 399
Query: 548 GSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 400 AREFHQIAGRAGRAG 414
>gi|408830045|ref|ZP_11214935.1| DEAD/DEAH box helicase domain-containing protein, partial
[Streptomyces somaliensis DSM 40738]
Length = 491
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 127/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A A + Y +P++ L E FD G +LTG + +
Sbjct: 53 PTGSGKSLVAAGAHFTALAHDQVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 112 NADAPVICCTAEVLASIALRDGRAADVGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 171
Query: 409 L----CGDPSVL--DVVRKICSETG---------------------DELHEQHYERFKPL 441
L GD S+ D+ R+ T D L E R P+
Sbjct: 172 LMSATLGDVSMFEKDLTRRTGRPTAVVRSATRPVPLSYEYRTTPITDTLTELLETRQAPV 231
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
+ T + +S + SR E + I ++ H V +
Sbjct: 232 YIVHFTQAAAVERAQSLMSINMCSREEKDRIAELIGDFRFTTAFGRNLSRYVRHGIGVHH 291
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++ +
Sbjct: 292 AGMLPKYRRLVEKL--AQAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRTLRA 349
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 REFHQIAGRAGRAG 363
>gi|343522505|ref|ZP_08759471.1| hypothetical protein HMPREF9058_1993 [Actinomyces sp. oral taxon
175 str. F0384]
gi|343401914|gb|EGV14420.1| hypothetical protein HMPREF9058_1993 [Actinomyces sp. oral taxon
175 str. F0384]
Length = 899
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 136/337 (40%), Gaps = 62/337 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH + +++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 48 PHQDEALSEILEDRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 107
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V G ++TG + + + I CT E+++ + D ++DE +D
Sbjct: 108 LVRLFGADNVGMVTG-DTSINAAAPIICCTAEILANQSLREGEDMDVDCVIMDEFHYYAD 166
Query: 389 ACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
RG+AW LL L ++ L GD S VR + TG E+ + +P+ +E
Sbjct: 167 PQRGWAWQVPLLELPQAQMVLLSATLGDVSFF--VRDLRERTGREVAVVD-DAVRPVPLE 223
Query: 445 AKTL---LGDLRNVRSGD-----CVVAFSRREIFE------------------------- 471
+ + +G+L G VV FS++E E
Sbjct: 224 MEYVVEPIGELLQRLVGQDKAPVYVVHFSQKEAVERATSLLSVDLVPKSRKAEVVEALGD 283
Query: 472 ------VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+ + V + + P RR L ++ V+ +D +G+G+N+
Sbjct: 284 FRFGGGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLA--REGLLSVICGTDTLGVGINV 341
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR VV SL K++G K + + QIAGRAGR G
Sbjct: 342 PIRSVVMTSLVKFDGSKERHLTAREFHQIAGRAGRAG 378
>gi|288918025|ref|ZP_06412383.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
gi|288350543|gb|EFC84762.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
Length = 879
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 127/319 (39%), Gaps = 56/319 (17%)
Query: 297 IYHCGPTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTG 350
I PT SGK+ A A ++ Y +P++ L E F + A+ ++TG
Sbjct: 89 IILATPTGSGKSLVATGAHFAALGWGRRTFYTAPIKALVSEKFFALCAVFGAASVGMMTG 148
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLM 403
+ + + I CT E+++ + D A V+DE +D RG+AW L+ L
Sbjct: 149 -DASVNETAPIICCTAEILANIALRDGAEADVGQVVMDEFHYYADPDRGWAWQVPLIELP 207
Query: 404 ADEIHL----CGDPSVL--DVVRKICSETG-----------------DELHEQHYE---- 436
+ L GD + D+ R+ T LHE E
Sbjct: 208 NTQFLLMSATLGDVTRFEEDLTRRTGRPTAVVRSAQRPVPLFHRYVITPLHETIEELLET 267
Query: 437 RFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHH 483
R P+ V T L +S + +R E + I + H
Sbjct: 268 RQAPVYVVHFTQASALERAQSLMSINVSTRAEKDAIAQMIGGFRFASGFGKTLSRLVRHG 327
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 328 IGVHHAGMLPKYRRLVELLA--QAGLLKVICGTDTLGVGINVPIRTVVFTALSKYDGTRT 385
Query: 544 IPVPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 386 RILTAREFHQIAGRAGRAG 404
>gi|357019047|ref|ZP_09081305.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356481108|gb|EHI14218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 851
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 127/324 (39%), Gaps = 74/324 (22%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAME-------VFDKVNALGVYCSLLTG 350
PT SGK+ A A ++ Y +P++ L E VF VN +LTG
Sbjct: 65 PTGSGKSLVATGALYAALAGGRRSYYTAPIKALVSEKFFALCEVFGAVN-----VGMLTG 119
Query: 351 QEKKLVPFSNHIACTVEMVSTDEMYD---------VAVIDEIQMMSDACRGYAWTRALLG 401
+ + + IACT E+++ + + + V+DE D RG+AW LL
Sbjct: 120 -DAAVNADAPIIACTAEVLANIALREGGEANTDDHMIVMDEFHFYGDPDRGWAWQVPLLE 178
Query: 402 LMADEIHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LG 450
L + L GD + L D+ R+ T Q R PL T +
Sbjct: 179 LPKAQFLLMSATLGDVTFLRDDLTRRTGRPTALVTGAQ---RPVPLFYSYATTPIHETIS 235
Query: 451 DLRNVRSGDC-VVAFSRREIFEVKMAI-------------------------------EK 478
DL + R +V F++ E A+ +
Sbjct: 236 DLLDTRQAPIYIVHFTQASALERAQALMSINVCTREEKAAIAEMIGGFRFSSAFGATLSR 295
Query: 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538
H V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY
Sbjct: 296 LVRHGIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKY 353
Query: 539 NGDKIIPVPGSQVKQIAGRAGRRG 562
+G + + + QIAGRAGR G
Sbjct: 354 DGVRTRLLNAREFHQIAGRAGRAG 377
>gi|320534636|ref|ZP_08035081.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133156|gb|EFW25659.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 888
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 136/337 (40%), Gaps = 62/337 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH + +++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 37 PHQDEALSEILEDRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 96
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V G ++TG + + + I CT E+++ + D ++DE +D
Sbjct: 97 LVRLFGADNVGMVTG-DTSINAAAPIICCTAEILANQSLREGEDMDVDCVIMDEFHYYAD 155
Query: 389 ACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
RG+AW LL L ++ L GD S VR + TG E+ + +P+ +E
Sbjct: 156 PQRGWAWQVPLLELPQAQMVLLSATLGDVSFF--VRDLRERTGREVAVID-DAVRPVPLE 212
Query: 445 AKTL---LGDLRNVRSGD-----CVVAFSRREIFE------------------------- 471
+ + +G+L G VV FS++E E
Sbjct: 213 MEYVVEPIGELLQRLVGQDKAPVYVVHFSQKEAVERATSLLSVDLVPKSRKAEVVKALGD 272
Query: 472 ------VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+ + V + + P RR L ++ V+ +D +G+G+N+
Sbjct: 273 FRFGGGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLA--REGLLSVICGTDTLGVGINV 330
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR VV SL K++G K + + QIAGRAGR G
Sbjct: 331 PIRSVVMTSLVKFDGSKERHLTAREFHQIAGRAGRAG 367
>gi|418048570|ref|ZP_12686657.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
gi|353189475|gb|EHB54985.1| DEAD/DEAH box helicase domain protein [Mycobacterium rhodesiae
JS60]
Length = 846
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 137/347 (39%), Gaps = 76/347 (21%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAME-------VFDKVNALGVYCSLLTG 350
PT SGK+ A A + Y +P++ L E VF N +LTG
Sbjct: 65 PTGSGKSLVATGAIYAALAAGTRSYYTAPIKALVSEKFFALCDVFGPAN-----VGMLTG 119
Query: 351 QEKKLVPFSNHIACTVEMVST-----DEMYDVA--VIDEIQMMSDACRGYAWTRALLGLM 403
+ + + IACT E+++ E D+ V+DE D RG+AW LL L
Sbjct: 120 -DAAVNAGAPVIACTAEILANIALREGEHADIGLVVMDEFHFYGDPDRGWAWQVPLLELP 178
Query: 404 ADEIHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LGDL 452
+ L GD + L D+ R+ T + ER PL T + DL
Sbjct: 179 NAQFLLMSATLGDVTSLREDLTRRTGRATA---LVANAERPVPLFYSYATTPMHETIQDL 235
Query: 453 RNV-RSGDCVVAFSRREIFEVKMAI-------------------------------EKHT 480
+ R+ VV F++ E A+ +
Sbjct: 236 LDTKRAPIYVVHFTQASALERAQALMSVNVSSKEEKAAIADMIGGFRFTTAFGTTLSRLV 295
Query: 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG 540
H V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G
Sbjct: 296 RHGIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDG 353
Query: 541 DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + + QIAGRAGR G Y T + D+ +E LKQ
Sbjct: 354 TRSRLLSAREFHQIAGRAGRAG--YDTAGTVVVQAP--DHEVENLKQ 396
>gi|324999832|ref|ZP_08120944.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
Length = 847
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 129/321 (40%), Gaps = 70/321 (21%)
Query: 302 PTNSGKTY----NALQRFMEAKKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTG----Q 351
PT SGK+ ++ Y +P++ L E F + G +LTG
Sbjct: 60 PTGSGKSLVAMGAHAAALARGERTFYTAPIKALVSEKFFALCEVFGADQVGMLTGDAAVN 119
Query: 352 EKKLVPFSNHIACTVEMVS-----TDEMYDVA--VIDEIQMMSDACRGYAWTRALLGLMA 404
EK + + CT E+++ T DV V+DE +D RG+AW ++ L
Sbjct: 120 EKAPI-----VCCTAEILANLALRTGSGADVGSVVMDEFHFYADPSRGWAWQVPIVELPQ 174
Query: 405 DEIHL----CGDPSVL--DVVRKICSETGDELHEQHYERFKPL----VVEA--KTLLGDL 452
+ L GD S D+ R+ ET + ER PL VVE +T+ L
Sbjct: 175 AQFLLMSATLGDTSFFAEDLRRRTGRETAEI---TSVERPVPLHFRYVVEPLHETITELL 231
Query: 453 RNVRSGDCVVAFSRREIFEVKMAI-------------------------------EKHTN 481
+ VV F+++ E A+ +
Sbjct: 232 ATREAPVYVVHFTQQAAVERAQALMSVNVTSKEDKAAIAETIGSFRFSSGFGRTLSRLVR 291
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
H V + + P RR L Q V+ +D +G+G+N+ IR V+F +LSKY+G
Sbjct: 292 HGIGVHHAGMLPRYRRLVETLA--QAGLLKVICGTDTLGVGINVPIRTVLFTALSKYDGR 349
Query: 542 KIIPVPGSQVKQIAGRAGRRG 562
++ P+ + QIAGRAGR G
Sbjct: 350 RVRPLKAREFHQIAGRAGRAG 370
>gi|293189614|ref|ZP_06608332.1| DEAD/DEAH box helicase [Actinomyces odontolyticus F0309]
gi|292821455|gb|EFF80396.1| DEAD/DEAH box helicase [Actinomyces odontolyticus F0309]
Length = 916
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFD 336
PH ++ + PT SGK+ AL + Y +PL+ L E FD
Sbjct: 41 PHQEEALVEILAGNHVIAATPTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFD 100
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V+ G ++TG + L + I CT E+++ + D+ V+DE D
Sbjct: 101 LVSLFGADNVGMVTG-DVSLNADAPIICCTAEILANQSLREGPTLDADMIVMDEFHFYGD 159
Query: 389 ACRGYAWTRALLGLMADEI----HLCGDPSVLDVVRKICSETGDELHE-QHYERFKPLVV 443
RG+AW LL L ++ GD + + R TG ++ ER PL
Sbjct: 160 RQRGWAWQVPLLELRTPQVVAMSATLGDTTRFE--RAWKERTGRDVSLIDDAERPVPLEF 217
Query: 444 E---------AKTLLGDLR------------NVRSGDC-----VVAFSRREIFEVKMA-- 475
E + LLG+ R V + C +++ +++ ++A
Sbjct: 218 EYVVDRLPDTVERLLGEGRWPVYIVHFSQRDAVATAQCFDRSSLISPEQKKAIAAQLAGV 277
Query: 476 ---------IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
++ V + + P RR L Q ++ +D +G+G+N+
Sbjct: 278 SFTKGFGQTLKSLLAQGIGVHHAGMLPRYRRLVERL--TQAGLLPIVCGTDTLGVGINVP 335
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR V+ SL KY+G ++ V + QIAGRAGR G
Sbjct: 336 IRTVLMTSLVKYDGRRMRHVSAREFHQIAGRAGRAG 371
>gi|399527240|ref|ZP_10766963.1| PF12029 domain protein [Actinomyces sp. ICM39]
gi|398362195|gb|EJN45901.1| PF12029 domain protein [Actinomyces sp. ICM39]
Length = 913
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFD 336
PH ++ + PT SGK+ AL + Y +PL+ L E FD
Sbjct: 37 PHQEEALVEILAGNHVIAATPTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFD 96
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V+ G ++TG + L + I CT E+++ + D+ V+DE D
Sbjct: 97 LVSLFGADNVGMVTG-DVSLNADAPIICCTAEILANQSLREGPTLDADMIVMDEFHFYGD 155
Query: 389 ACRGYAWTRALLGLMADEI----HLCGDPSVLDVVRKICSETGDELHE-QHYERFKPLVV 443
RG+AW LL L ++ GD + + R TG ++ ER PL
Sbjct: 156 RQRGWAWQVPLLELRTPQVVAMSATLGDTTRFE--RAWKERTGRDVSLIDDAERPVPLEF 213
Query: 444 E---------AKTLLGDLR------NVRSGDCVV---AFSRREIF--EVKMAIEKHTN-- 481
E + LLG+ R + D V +F R + E K AI
Sbjct: 214 EYVVDRLPDTVERLLGEGRWPVYIVHFSQRDAVATAQSFDRSSLISPEQKKAIAAQLAGV 273
Query: 482 ---------------HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
V + + P RR L Q ++ +D +G+G+N+
Sbjct: 274 SFTKGFGQTLKSLLAQGIGVHHAGMLPRYRRLVERL--TQAGLLPIVCGTDTLGVGINVP 331
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR V+ SL KY+G ++ V + QIAGRAGR G
Sbjct: 332 IRTVLMTSLVKYDGRRMRHVSAREFHQIAGRAGRAG 367
>gi|329947452|ref|ZP_08294656.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328525202|gb|EGF52253.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 888
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 137/337 (40%), Gaps = 62/337 (18%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH + +++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 37 PHQDEALSEILEGRHVIAATPTGSGKSMIALAAHTVSLARGGRSYYTAPLKALVSEKFFE 96
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V G ++TG + + + I CT E+++ + D ++DE +D
Sbjct: 97 LVRLFGADNVGMVTG-DTSINAAAPIICCTAEILANQSLREGEDMDVDCVIMDEFHYYAD 155
Query: 389 ACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
+ RG+AW LL L ++ L GD S VR + TG E+ + +P+ +E
Sbjct: 156 SQRGWAWQVPLLELPQAQMVLLSATLGDVSFF--VRDLRKRTGREVAVID-DAVRPVPLE 212
Query: 445 AKTL---LGDLRNVRSGD-----CVVAFSRREIFE------------------------- 471
+ + +G+L G VV FS++E E
Sbjct: 213 MEYVVEPIGELLQRLVGQDKAPVYVVHFSQKEAVERAASLLSVDLVPRSRKAEVVKALGD 272
Query: 472 ------VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525
+ + V + + P RR L ++ V+ +D +G+G+N+
Sbjct: 273 FRFGGGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLA--REGLLSVICGTDTLGVGINV 330
Query: 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR VV SL K++G + + + QIAGRAGR G
Sbjct: 331 PIRSVVMTSLVKFDGSRERHLTAREFHQIAGRAGRAG 367
>gi|399523585|ref|ZP_10764208.1| PF12029 domain protein [Atopobium sp. ICM58]
gi|398375414|gb|EJN52802.1| PF12029 domain protein [Atopobium sp. ICM58]
Length = 916
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFD 336
PH ++ + PT SGK+ AL + Y +PL+ L E FD
Sbjct: 41 PHQEEALVEILAGNHVIAATPTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFD 100
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V+ G ++TG + L + I CT E+++ + D+ V+DE D
Sbjct: 101 LVSLFGADNVGMVTG-DVSLNADAPIICCTAEILANQSLREGPTLDADMIVMDEFHFYGD 159
Query: 389 ACRGYAWTRALLGLMADEI----HLCGDPSVLDVVRKICSETGDELHE-QHYERFKPLVV 443
RG+AW LL L ++ GD + + R TG ++ ER PL
Sbjct: 160 RQRGWAWQVPLLELRTPQVVAMSATLGDTTRFE--RAWKERTGRDVSLIDDAERPVPLEF 217
Query: 444 E---------AKTLLGDLR------NVRSGDCVV---AFSRREIF--EVKMAIEKHTN-- 481
E + LLG+ R + D V +F R + E K AI
Sbjct: 218 EYVVDRLPDTVERLLGEGRWPVYIVHFSQRDAVATAQSFDRSSLISAEQKKAIAAQLAGV 277
Query: 482 ---------------HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
V + + P RR L Q ++ +D +G+G+N+
Sbjct: 278 SFTKGFGQTLKSLLAQGIGVHHAGMLPRYRRLVERL--TQAGLLPIVCGTDTLGVGINVP 335
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR V+ SL KY+G ++ V + QIAGRAGR G
Sbjct: 336 IRTVLMTSLVKYDGRRMRHVSAREFHQIAGRAGRAG 371
>gi|318056853|ref|ZP_07975576.1| helicase [Streptomyces sp. SA3_actG]
gi|318075899|ref|ZP_07983231.1| helicase [Streptomyces sp. SA3_actF]
Length = 837
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 130/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 53 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKMFGTENVGMLTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 112 NADAPVICCTAEVLASIALRDGRNADVGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 171
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAK-----TLLGDLRNVRS 457
L GD ++ D+ R+ T + R PL E K L +L + R
Sbjct: 172 LMSATLGDVALFEKDLTRRTGRPTS---VVRSATRPVPLSYEYKLTPLTETLTELLDTRQ 228
Query: 458 GDC-VVAFSRREIFEVKMAI-------------------------------EKHTNHHCC 485
+V F++ + E A+ ++ H
Sbjct: 229 APVYIVHFTQAQAVERAQALMSINMCTREEKDRIAELIGNFRFTTKFGRNLSRYVRHGIG 288
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++
Sbjct: 289 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRT 346
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 347 LRAREFHQIAGRAGRAG 363
>gi|302523334|ref|ZP_07275676.1| helicase [Streptomyces sp. SPB78]
gi|302432229|gb|EFL04045.1| helicase [Streptomyces sp. SPB78]
Length = 854
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 130/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 70 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKMFGTENVGMLTG-DASV 128
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 129 NADAPVICCTAEVLASIALRDGRNADVGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 188
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAK-----TLLGDLRNVRS 457
L GD ++ D+ R+ T + R PL E K L +L + R
Sbjct: 189 LMSATLGDVALFEKDLTRRTGRPTS---VVRSATRPVPLSYEYKLTPLTETLTELLDTRQ 245
Query: 458 GDC-VVAFSRREIFEVKMAI-------------------------------EKHTNHHCC 485
+V F++ + E A+ ++ H
Sbjct: 246 APVYIVHFTQAQAVERAQALMSINMCTREEKDRIAELIGNFRFTTKFGRNLSRYVRHGIG 305
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++
Sbjct: 306 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRT 363
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 364 LRAREFHQIAGRAGRAG 380
>gi|404445273|ref|ZP_11010416.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
gi|403652455|gb|EJZ07505.1| DEAD/DEAH box helicase [Mycobacterium vaccae ATCC 25954]
Length = 840
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 137/342 (40%), Gaps = 66/342 (19%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVFDKV-NALGV-YCSLLTGQEKKL 355
PT SGK+ A A + Y +P++ L E F + G +LTG + +
Sbjct: 58 PTGSGKSLVATGAVFAALAADRTSFYTAPIKALVSEKFFALCEVFGADNVGMLTG-DASV 116
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ IACT E+++ + + + V+DE D RG+AW LL L +
Sbjct: 117 NADAPIIACTAEILANVALREGSEADIGLVVMDEFHFYGDPDRGWAWQVPLLELPHAQFL 176
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAKTL-----LGDLRNVRS 457
L GD + L D+ R+ T ER PL T + +L + +
Sbjct: 177 LMSATLGDVTFLREDLTRRTGRATA---LVAGAERPVPLYFSYATTPMHETIQELVDTKQ 233
Query: 458 GDC-VVAFSRREIFE--------------VKMAIEKHTN-----------------HHCC 485
VV F++ E K AI +H H
Sbjct: 234 APVYVVHFTQASALERAQALMSVNVSTKAEKAAIAEHIGAFRFSTAFGSTLSRLVRHGIG 293
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G +
Sbjct: 294 VHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGTRTRL 351
Query: 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587
+ + QIAGRAGR G T+ + D+ +E LKQ
Sbjct: 352 LNAREFHQIAGRAGRAGF----DTAGTVVVQAPDHEVENLKQ 389
>gi|227495796|ref|ZP_03926107.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834655|gb|EEH67038.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 899
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 137/336 (40%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAME-VFD 336
PH ++++ + + PT SGK+ AL + Y +PL+ L E F+
Sbjct: 49 PHQDEALSQILDGRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 108
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
+ G ++TG + + + I CT E+++ + D ++DE +D
Sbjct: 109 LIRLFGADNVGMVTG-DSSINAGAPIICCTAEILANQSLREGEAMDVDCVIMDEFHYYAD 167
Query: 389 ACRGYAWTRALLGLMADEIHLC----GDPSVLDVVRKICSETGDELHE-QHYERFKPLVV 443
RG+AW LL L ++ L GD S V + TG E+ + ER PL +
Sbjct: 168 PQRGWAWQVPLLELPQAQMVLLSATLGDVSFF--VTDMKERTGREVAVIEGAERPVPLEM 225
Query: 444 E-AKTLLGDL--RNVRSGDC---VVAFSRREIFEVKMA------IEKHTNHHCCVIYGA- 490
E +G+L R V+ VV FS++E E + + K G+
Sbjct: 226 EYVVEPIGELLQRLVQQHKAPVYVVHFSQKEAIERATSLLSVDLVPKSRKEEVAAALGSF 285
Query: 491 ------------------------LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
+ P RR L ++ V+ +D +G+G+N+
Sbjct: 286 RFGPGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLA--REGLLSVICGTDTLGVGINVP 343
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR VV SL K++G K + + QIAGRAGR G
Sbjct: 344 IRSVVLTSLVKFDGAKERHLTAREFHQIAGRAGRAG 379
>gi|396583649|ref|ZP_10484171.1| PF12029 domain protein [Actinomyces sp. ICM47]
gi|395548825|gb|EJG16016.1| PF12029 domain protein [Actinomyces sp. ICM47]
Length = 912
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFD 336
PH ++ + PT SGK+ AL + Y +PL+ L E FD
Sbjct: 37 PHQEEALVEILAGNHVIAATPTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFD 96
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V+ G ++TG + L + I CT E+++ + D+ V+DE D
Sbjct: 97 LVSLFGADNVGMVTG-DVSLNADAPIICCTAEILANQSLREGPTLDADMIVMDEFHFYGD 155
Query: 389 ACRGYAWTRALLGLMADEI----HLCGDPSVLDVVRKICSETGDELHE-QHYERFKPLVV 443
RG+AW LL L ++ GD + + R TG ++ ER PL
Sbjct: 156 RQRGWAWQVPLLELRTPQVVAMSATLGDTTRFE--RAWKERTGRDVSLIDDAERPVPLEF 213
Query: 444 E---------AKTLLGDLR------NVRSGDCVV---AFSRREIF--EVKMAIEKHTN-- 481
E + LLG+ R + D V +F R + E K AI
Sbjct: 214 EYVVDRLPDTVERLLGEGRWPVYIVHFSQRDAVATAQSFDRSSLISPEQKKAIAAQLAGV 273
Query: 482 ---------------HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
V + + P RR L Q ++ +D +G+G+N+
Sbjct: 274 SFTKGFGQTLKSLLAQGIGVHHAGMLPRYRRLVERL--TQAGLLPIVCGTDTLGVGINVP 331
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR V+ SL KY+G ++ V + QIAGRAGR G
Sbjct: 332 IRTVLMTSLVKYDGRRMRHVSAREFHQIAGRAGRAG 367
>gi|333022844|ref|ZP_08450908.1| putative helicase [Streptomyces sp. Tu6071]
gi|332742696|gb|EGJ73137.1| putative helicase [Streptomyces sp. Tu6071]
Length = 857
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 130/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 73 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKMFGTENVGMLTG-DASV 131
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 132 NADAPVICCTAEVLASIALRDGKDADVGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 191
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAK-----TLLGDLRNVRS 457
L GD ++ D+ R+ T + R PL E K L +L + R
Sbjct: 192 LMSATLGDVALFEKDLTRRTGRPTS---VVRSATRPVPLSYEYKLTPLTETLTELLDTRQ 248
Query: 458 GDC-VVAFSRREIFEVKMAI-------------------------------EKHTNHHCC 485
+V F++ + E A+ ++ H
Sbjct: 249 APVYIVHFTQAQAVERAQALMSINMCTREEKDHIAELIGNFRFTTKFGRNLSRYVRHGIG 308
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++
Sbjct: 309 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRT 366
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 367 LRAREFHQIAGRAGRAG 383
>gi|295835301|ref|ZP_06822234.1| DNA or RNA helicase, superfamily II [Streptomyces sp. SPB74]
gi|295825418|gb|EDY43304.2| DNA or RNA helicase, superfamily II [Streptomyces sp. SPB74]
Length = 857
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 130/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 73 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKMFGTENVGMLTG-DASV 131
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 132 NADAPVICCTAEVLASIALRDGKDADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 191
Query: 409 L----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVEAK-----TLLGDLRNVRS 457
L GD ++ D+ R+ T + R PL E K L +L + R
Sbjct: 192 LMSATLGDVALFEKDLTRRTGRPTS---VVRSATRPVPLSYEYKLTPLTETLTELLDTRQ 248
Query: 458 GDC-VVAFSRREIFEVKMAI-------------------------------EKHTNHHCC 485
+V F++ + E A+ ++ H
Sbjct: 249 APVYIVHFTQAQAVERAQALMSINMCTREEKDRIAELIGNFRFTTKFGRNLSRYVRHGIG 308
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++
Sbjct: 309 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRT 366
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 367 LRAREFHQIAGRAGRAG 383
>gi|312139415|ref|YP_004006751.1| dead/deah box helicase [Rhodococcus equi 103S]
gi|311888754|emb|CBH48066.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
Length = 839
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 127/322 (39%), Gaps = 72/322 (22%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVF---------DKVNALGVYCSLL 348
PT SGK+ AL E ++ Y +P++ L E F DKV ++
Sbjct: 58 PTGSGKSMVALGAHFFALAEGRRTFYTAPIKALVSEKFFALCEVFGADKVG-------MM 110
Query: 349 TGQEKKLVPFSNHIAC-TVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALL 400
TG V S I C T E+V+ + + A V+DE S+ RG+AW L+
Sbjct: 111 TGDAS--VNSSAPIICATAEIVANLALREGAGSDIGQVVMDEFHFYSEPDRGWAWQVPLI 168
Query: 401 GLMADEIHL----CGDPSVL--DVVRKICSET---------------------GDELHEQ 433
L + L GD + L D+ R+ T G+E+ E
Sbjct: 169 ELPQAQFLLMSATLGDVTHLREDLTRRTGRPTTEVSGSERPVPLHFSYSQTPIGEEIEEL 228
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHT 480
P+ V T L ++ V SR E + AI +
Sbjct: 229 VTTHQAPVYVVHFTQAAALERAQALTSVNLCSRAEKDAIAEAIGAFRFTTGFGKTLSRLV 288
Query: 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG 540
H V + + P+ RR L QD V+ +D +G+G+N+ IR V+ L+K++G
Sbjct: 289 RHGIGVHHAGMLPKYRRLIERLA--QDGLLKVICGTDTLGVGINVPIRTVLLTGLTKFDG 346
Query: 541 DKIIPVPGSQVKQIAGRAGRRG 562
+ + + QIAGRAGR G
Sbjct: 347 TRTRQLRAREFHQIAGRAGRAG 368
>gi|325672698|ref|ZP_08152394.1| DEAD/DEAH box helicase [Rhodococcus equi ATCC 33707]
gi|325556575|gb|EGD26241.1| DEAD/DEAH box helicase [Rhodococcus equi ATCC 33707]
Length = 839
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 127/322 (39%), Gaps = 72/322 (22%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVF---------DKVNALGVYCSLL 348
PT SGK+ AL E ++ Y +P++ L E F DKV ++
Sbjct: 58 PTGSGKSMVALGAHFFALAEGRRTFYTAPIKALVSEKFFALCEVFGADKVG-------MM 110
Query: 349 TGQEKKLVPFSNHIAC-TVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALL 400
TG V S I C T E+V+ + + A V+DE S+ RG+AW L+
Sbjct: 111 TGDAS--VNSSAPIICATAEIVANLALREGAGSDIGQVVMDEFHFYSEPDRGWAWQVPLI 168
Query: 401 GLMADEIHL----CGDPSVL--DVVRKICSET---------------------GDELHEQ 433
L + L GD + L D+ R+ T G+E+ E
Sbjct: 169 ELPQAQFLLMSATLGDVTHLREDLTRRTGRPTTEVSGSERPVPLHFSYSQTPIGEEIEEL 228
Query: 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHT 480
P+ V T L ++ V SR E + AI +
Sbjct: 229 VTTHQAPVYVVHFTQAAALERAQALTSVNLCSRAEKDAIAEAIGAFRFTTGFGKTLSRLV 288
Query: 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG 540
H V + + P+ RR L QD V+ +D +G+G+N+ IR V+ L+K++G
Sbjct: 289 RHGIGVHHAGMLPKYRRLIERLA--QDGLLKVICGTDTLGVGINVPIRTVLLTGLTKFDG 346
Query: 541 DKIIPVPGSQVKQIAGRAGRRG 562
+ + + QIAGRAGR G
Sbjct: 347 TRTRQLRAREFHQIAGRAGRAG 368
>gi|154509365|ref|ZP_02045007.1| hypothetical protein ACTODO_01896 [Actinomyces odontolyticus ATCC
17982]
gi|153798999|gb|EDN81419.1| DEAD/DEAH box helicase [Actinomyces odontolyticus ATCC 17982]
Length = 916
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 131/336 (38%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFD 336
PH ++ + PT SGK+ AL + Y +PL+ L E FD
Sbjct: 41 PHQEEALVEILAGNHVIAATPTGSGKSMIALAAHFTSMAHGGRSYYTAPLKALVSEKFFD 100
Query: 337 KVNALGV-YCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSD 388
V+ G ++TG + L + I CT E+++ + D+ V+DE D
Sbjct: 101 LVSLFGADNVGMVTG-DVSLNADAPIICCTAEILANQSLREGPTLDADMIVMDEFHFYGD 159
Query: 389 ACRGYAWTRALLGLMADEI----HLCGDPSVLDVVRKICSETGDELHE-QHYERFKPLVV 443
RG+AW LL L ++ GD + + R TG ++ ER PL
Sbjct: 160 RQRGWAWQVPLLELRTPQVVAMSATLGDTTRFE--RAWKERTGRDVSLIDDAERPVPLEF 217
Query: 444 E---------AKTLLGDLR------NVRSGDCVV---AFSRREIF--EVKMAIEKHTN-- 481
E + LLG+ R + D V +F R + E K AI
Sbjct: 218 EYVVDRLPDTVERLLGEGRWPVYIVHFSQRDAVATAQSFDRSSLISPEQKKAIAAQLAGV 277
Query: 482 ---------------HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
V + + P RR L Q ++ +D +G+G+N+
Sbjct: 278 SFTKGFGQTLKSLLAQGIGVHHAGMLPRYRRLVERL--TQAGLLPIVCGTDTLGVGINVP 335
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR V+ SL KY+G ++ V + QIAGRAGR G
Sbjct: 336 IRTVLMTSLVKYDGRRMRHVSAREFHQIAGRAGRAG 371
>gi|383779787|ref|YP_005464353.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
gi|381373019|dbj|BAL89837.1| putative DEAD/DEAH box helicase [Actinoplanes missouriensis 431]
Length = 828
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 128/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNALQRFMEAKKG----IYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ A A G Y +P++ L E F + A+ +LTG + +
Sbjct: 53 PTGSGKSLVATGAHFAALAGDRTTFYTAPIKALVSEKFFALCAVFGAQNVGMLTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + + A V+DE ++ RG+AW L+ L +
Sbjct: 112 NADAPIICCTAEILANLALREGADADVGQVVMDEFHFYAEPDRGWAWQVPLIELPQAQFI 171
Query: 409 L----CGDPS--VLDVVRKICSETG-----------------DELHEQHYE----RFKPL 441
L GD + V D+ ++ ET LHE E R P+
Sbjct: 172 LMSATLGDTTRFVDDLSQRTGRETAVVSSVERPVPLLFEYAMTPLHETIEELLSTRQSPV 231
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCCVIY 488
+ T L +S + +R E ++ AI + H V +
Sbjct: 232 YIVHFTQAAALERAQSLMSINMCTREEKDKIAAAIGNFRFTAGFGRTLSRLVRHGIGVHH 291
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR V+F LSKY+G K +
Sbjct: 292 AGMLPKYRRLVETLA--QAGLLKVICGTDTLGVGINVPIRTVLFTGLSKYDGVKTRLLKA 349
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 REFHQIAGRAGRAG 363
>gi|284991492|ref|YP_003410046.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064737|gb|ADB75675.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 847
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 126/321 (39%), Gaps = 70/321 (21%)
Query: 302 PTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY----CSLLTGQE- 352
PT SGK+ A ++ Y +P++ L E F + GV+ +LTG
Sbjct: 66 PTGSGKSLVATGAQYAALAAGRRSWYTAPIKALVSEKFFAL--CGVFGAENVGMLTGDAA 123
Query: 353 -KKLVPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
+ P IACT E+++ D + V+DE D RG+AW LL L
Sbjct: 124 VNRDAPI---IACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPK 180
Query: 405 DEIHL----CGDPSVL--DVVRKICSETGDELHEQ------HYERFKPLVVEAKTLLGDL 452
+ L GD + L D+ R+ T + + HY P+ + LL D
Sbjct: 181 AQFLLMSATLGDVTFLREDLTRRTGRPTALVANAERPVPLHHYYATTPMHETIQELL-DT 239
Query: 453 RNVRSGDCVVAFSRREIFEVKMAI-------------------------------EKHTN 481
R VV F++ E A+ +
Sbjct: 240 RQAPV--YVVHFTQASALERAQALMSVNVCTKEEKAAIAETIGGFRFTTSFGTTLSRLVR 297
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
H V + + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G
Sbjct: 298 HGIGVHHAGMLPKYRRLVEQLA--QAGLLKVICGTDTLGVGINVPIRTVVFSALSKYDGT 355
Query: 542 KIIPVPGSQVKQIAGRAGRRG 562
+ + + QIAGRAGR G
Sbjct: 356 RTRLLQVREFHQIAGRAGRAG 376
>gi|296129034|ref|YP_003636284.1| DEAD/DEAH box helicase [Cellulomonas flavigena DSM 20109]
gi|296020849|gb|ADG74085.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
20109]
Length = 866
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 128/316 (40%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAME-VFDKVNALG-VYCSLLTGQEKKL 355
PT SGK+ + + ++ Y +P++ L E F V+ G ++TG + +
Sbjct: 60 PTGSGKSLAGVAAHAVALAQGRRSYYTAPIKALVSEKFFALVDVFGSANVGMVTG-DSAI 118
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ + CT E+++ + D + V+DE +D RG+AW LL L +
Sbjct: 119 NSDAPIVCCTAEILANQALRDGPASDVGLVVMDEFHYYADPQRGWAWQVPLLELTRTQFL 178
Query: 409 L----CGDPSVLDVVRKICSETGDELHE-QHYERFKPL-----VVEAKTLLGDLRNVRSG 458
L GD S V + TG ++ + ER PL V LL +L R
Sbjct: 179 LMSATLGDVSFF--VDDLTRRTGRDVAVVANAERPVPLTFSYSVEPLHELLDELVTTRRA 236
Query: 459 DC-VVAFSRREIFEVKMAI-------------------------------EKHTNHHCCV 486
VV F+++E E ++ + H V
Sbjct: 237 PVYVVHFTQKEAVERAQSLLSTPLASREQRDAIAAELGGFRFGPGFGKTLSRLLRHGVGV 296
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L Q V+ +D +G+G+N+ IR V SL KY+G ++ +
Sbjct: 297 HHAGMLPKYRRVVERLT--QRGLLPVVCGTDTLGVGINVPIRTVALTSLVKYDGVRMRHL 354
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 355 TAREFHQIAGRAGRAG 370
>gi|260903780|ref|ZP_05912102.1| superfamily II RNA helicase [Brevibacterium linens BL2]
Length = 841
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 134/316 (42%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ AL Q F + Y +PL+ L E F ++A G ++TG + +
Sbjct: 54 PTGSGKSLVALFALYQSFTRGIRAYYTAPLKALVSEKFFSLIDAFGAENVGMITG-DSTV 112
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I T E+++ + + + V+DE ++D RG+AW LL + +
Sbjct: 113 NGDAPVICATAEILANQALREGGLVDAGMVVMDEFHYVADPSRGWAWQVPLLEMPQAQFV 172
Query: 409 L----CGDPSVLDVVRKICSETG-DELHEQHYERFKPLVVE------AKTLLGDLRNVRS 457
L GD S ++ R + TG D R PL E + TL +RN ++
Sbjct: 173 LMSATLGDTS--EICRTMEDTTGRDSSVVTSATRPVPLDYEYSTETLSDTLRSLVRNDKA 230
Query: 458 GDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCCV 486
VV++S+ + V +A + K H V
Sbjct: 231 PVYVVSYSQAGAIDLATGLLSVDLASKEQKAAIAAAIKGFTFAKGFGQSLRKLLLHGVGV 290
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L V+ +D +G+G+N+ IR V+ L+K++G K+ +
Sbjct: 291 HHAGMLPKYRRLVEQLA--LKGLLLVISGTDTLGVGINVPIRSVLLTGLTKFDGRKMRKL 348
Query: 547 PGSQVKQIAGRAGRRG 562
+ +Q+AGRAGR G
Sbjct: 349 SVREFQQLAGRAGRAG 364
>gi|294790945|ref|ZP_06756103.1| putative DNA or RNA helicase superfamily II [Scardovia inopinata
F0304]
gi|294458842|gb|EFG27195.1| putative DNA or RNA helicase superfamily II [Scardovia inopinata
F0304]
Length = 864
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 139/336 (41%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNAL-QRFM---EAKKGIYCSPLRLLAME-VFD 336
PH F ++ + PT SGK+ A+ +M + K+ Y +P++ L E F+
Sbjct: 46 PHQDESFLALLSGDHVIVNTPTGSGKSLIAIGMHYMALCQGKRSYYTAPIKALVSEKFFE 105
Query: 337 KVNALG-VYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSD 388
V+ G + ++TG + ++ P + I CT E+++ + + +DE D
Sbjct: 106 LVSIFGPSFVGMITG-DTRINPDAPIICCTAEILANQALREGGKTPVACVAMDEFHFYGD 164
Query: 389 ACRGYAWTRALLGLMADEIHL----CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVE 444
RG+AW L+ L + L GD S + + + E+ ER PL +
Sbjct: 165 PDRGWAWQVPLITLPDTQFLLMSATLGDVSSIQALLDAHTSRKTEIIADA-ERPVPLEYQ 223
Query: 445 AKT--LLGDLRNVRSGD----CVVAFSRREIF------------------EVKMAIEKHT 480
KT L ++ + S + +V FS+ E +K A+E HT
Sbjct: 224 YKTEPLQAVVKRLISAEKTPIYIVHFSQDEAINTAENLASLGVSTKEERGRIKKALE-HT 282
Query: 481 NHHCC--------------VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
V + + P RR L Q+ V+ +D +G+G+N+
Sbjct: 283 RFSTVFGKTLKRFLINGVGVHHAGMLPRYRRIVEQLA--QEGLLPVICGTDTLGVGINVP 340
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
I VV L+KY+G + + + QIAGRAGR G
Sbjct: 341 IHTVVLTQLTKYDGHRQRRLRSREFHQIAGRAGRSG 376
>gi|443673308|ref|ZP_21138376.1| Dead/deah box helicase domain protein [Rhodococcus sp. AW25M09]
gi|443414123|emb|CCQ16714.1| Dead/deah box helicase domain protein [Rhodococcus sp. AW25M09]
Length = 838
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNAL-QRFMEAKKGI---YCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ A+ + GI Y +P++ L E F + + ++TG + +
Sbjct: 60 PTGSGKSMVAIGAHYAAMAAGIRSFYTAPIKALVSEKFFALCEIFGAQNVGMMTG-DASV 118
Query: 356 VPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I T E+V+ D ++DE S+ RG+AW L+ L +
Sbjct: 119 NSRAPIICATAEIVANLALRQGADSDIGQVIMDEFHYYSEPDRGWAWQVPLIELPHAQFL 178
Query: 409 L----CGD--------------------------PSVLDVVRKICSETGDELHEQHYERF 438
L GD P + V SET +EL + H
Sbjct: 179 LMSATLGDVSFFRDDLTRRTGRTTTVVSGTERPVPLMFSYVTTPISETIEELVQTH---L 235
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-------------EKHTNHHCC 485
P+ V T L ++ V S++E ++ AI + H
Sbjct: 236 APVYVVHFTQAAALERAQALTSVNVASKQEKAQIAEAIGNFRFTTGFGKTLSRLVRHGIG 295
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L QD V+ +D +G+G+N+ IR V+F L+KY+G +
Sbjct: 296 VHHAGMLPKYRRLVEKLA--QDGLLKVICGTDTLGVGINVPIRTVLFTGLTKYDGIRTRK 353
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 354 LRAREFHQIAGRAGRAG 370
>gi|229819938|ref|YP_002881464.1| helicase [Beutenbergia cavernae DSM 12333]
gi|229565851|gb|ACQ79702.1| helicase domain protein [Beutenbergia cavernae DSM 12333]
Length = 885
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 131/328 (39%), Gaps = 76/328 (23%)
Query: 302 PTNSGKTYNALQRFM----EAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A+ + Y +P++ L E FD G + ++TG + +
Sbjct: 77 PTGSGKSLVAVAAHAVALARGARTYYTAPIKALVSEKFFDLAATFGAHQVGMITG-DVAI 135
Query: 356 VPFSNHIACTVEMV--------------STDEMYDVAVI-DEIQMMSDACRGYAWTRALL 400
P + I CT E++ ST+ DV V+ DE +D RG+AW LL
Sbjct: 136 NPTAPIICCTAEILAAQTLRGDLAATPTSTENDADVVVVADEFHFYADPQRGWAWQVPLL 195
Query: 401 GLMADEIHL----CGDPSVL--DVVRKICSETGDELHEQH---------YERFKPLVVEA 445
L + L GD + + DV R+ + H + E + L+VE
Sbjct: 196 DLPGAQFLLMSATLGDMTAIAADVARRTGRDVATVTHTERPVPLTYTYSLEPLQELLVE- 254
Query: 446 KTLLGDLRNVRSGDCVVAFSRREIFE-------VKMAIEKHTNHHCCVIYG--------- 489
LLG R+ VV F++ E V++A + + G
Sbjct: 255 --LLG---THRAPAYVVHFTQAAALERAQALTSVQVASRAQRDAIAAALDGERFATGFGR 309
Query: 490 ---------------ALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYS 534
+ P RR L Q ++ +D +G+G+N+ IR VVF
Sbjct: 310 TLSRLLRAGIGVHHAGMLPRYRRLVERLV--QAGHLRIVCGTDTLGVGVNMPIRTVVFTG 367
Query: 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
L+K++G++ + + QIAGRAGR G
Sbjct: 368 LTKFDGERSRHLSAREFHQIAGRAGRAG 395
>gi|158315974|ref|YP_001508482.1| DEAD/DEAH box helicase [Frankia sp. EAN1pec]
gi|158111379|gb|ABW13576.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
Length = 950
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 128/315 (40%), Gaps = 58/315 (18%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKL 355
PT SGK+ A A ++ Y +P++ L E F + A+ ++TG + +
Sbjct: 168 PTGSGKSLVATGAHFAALGWGRRTFYTAPIKALVSEKFFALCAVFGPARVGMMTG-DASV 226
Query: 356 VPFSNHIACTVEMVSTDEMYDVA-------VIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E+++ + D A V+DE +D RG+AW L+ L D
Sbjct: 227 NETAPIICCTAEILANIALRDSATADVGQVVMDEFHYYADPDRGWAWQVPLIEL-PDTQF 285
Query: 409 LCGDPSVLDVVR---KICSETG---------------------DELHEQHYE----RFKP 440
L ++ DV R + TG LHE E R P
Sbjct: 286 LLMSATLGDVTRFEEDLTRRTGRPTAVVRSAQRPVPLFHRYVTTPLHETIEELLETRQAP 345
Query: 441 LVVEAKTLLGDLRNVRSGDCVVAFSRRE---IFEV----------KMAIEKHTNHHCCVI 487
+ V T L ++ V +R E I E+ + + H V
Sbjct: 346 VYVVHFTQASALERAQALMSVNVSTRAEKDAIAEMIGGFRFTAGFGKTLSRLVRHGIGVH 405
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+ + P+ RR L Q V+ +D +G+G+N+ IR VVF +LSKY+G + +
Sbjct: 406 HAGMLPKYRRLVELLA--QAGLLKVICGTDTLGVGINVPIRTVVFTALSKYDGTRTRILT 463
Query: 548 GSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 464 AREFHQIAGRAGRAG 478
>gi|422293533|gb|EKU20833.1| rna helicase like protein, partial [Nannochloropsis gaditana
CCMP526]
Length = 45
Score = 66.6 bits (161), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
+KR +I H GPTNSGKT+ AL+R A GIYC PLRLLA EV++
Sbjct: 1 LKRSLILHVGPTNSGKTHEALERMQRAASGIYCGPLRLLAWEVYE 45
>gi|344998235|ref|YP_004801089.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
SirexAA-E]
gi|344313861|gb|AEN08549.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. SirexAA-E]
Length = 857
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 73 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 131
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 132 NADAPVICCTAEVLASIALRDGRYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 191
Query: 409 L----CGDPSVL--DVVRKICSET-----GDELHEQHYE-RFKPLVVEAKTLLGDLRNVR 456
L GD S+ D+ R+ T YE R P + E T L D R +
Sbjct: 192 LMSATLGDVSMFEEDLTRRTGRPTSVVRSATRPVPLSYEYRLTP-ITETLTELLDTR--Q 248
Query: 457 SGDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCC 485
S +V F++ + + + M + ++ H
Sbjct: 249 SPVYIVHFTQAAAVERAQSLMSINMCTKEEKEKIADLIGSFRFTTKFGQNLSRYVRHGIG 308
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G ++
Sbjct: 309 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGTRVRT 366
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 367 LRAREFHQIAGRAGRAG 383
>gi|300782796|ref|YP_003763087.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei U32]
gi|384146016|ref|YP_005528832.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|399534682|ref|YP_006547344.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|299792310|gb|ADJ42685.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei U32]
gi|340524170|gb|AEK39375.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|398315452|gb|AFO74399.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
Length = 834
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 127/314 (40%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKKL 355
PT SGK+ A+ + ++ Y +P++ L E F ++ G ++TG + +
Sbjct: 53 PTGSGKSLVAVGAHFTALAQGRRSYYTAPIKALVSEKFFQLIDIFGADSVGMMTG-DSSV 111
Query: 356 VPFSNHIACTVEMVS-------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
P + I CT E+++ D V DE S+ RG+AW +L L +
Sbjct: 112 NPDAPIICCTAEILANIALRFGADAPVGQVVADEFHFYSEPDRGWAWQVPILELPHAQFV 171
Query: 409 L----CGDPSVL--DVVRKICSETG-----------------DELHEQHYERFK----PL 441
L GD S D+ R+ T LHE E P+
Sbjct: 172 LMSATLGDVSFFEKDLTRRTGKPTAVVTSAQRPVPLTFRYALTPLHETMSELLNGGQAPV 231
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRRE-------IFEVKMA------IEKHTNHHCCVIY 488
V + + ++ + S+ E I + + A + + H V +
Sbjct: 232 YVVHFSQAAAIERAQTLMSINVTSKAEKEAIAELIGDFRFAAGFGKTLSRLVRHGIGVHH 291
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR VVF +L+KY+G + +
Sbjct: 292 AGMLPKYRRLVETL--AQSGLLKVICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKA 349
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 350 REFHQIAGRAGRAG 363
>gi|423348946|ref|ZP_17326602.1| hypothetical protein HMPREF9156_00140 [Scardovia wiggsiae F0424]
gi|393703175|gb|EJD65376.1| hypothetical protein HMPREF9156_00140 [Scardovia wiggsiae F0424]
Length = 886
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNAL-QRFM---EAKKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKKL 355
PT SGK+ A+ FM ++ Y +P++ L E F+ V+ G Y ++TG + ++
Sbjct: 85 PTGSGKSLIAVAMHFMALCRGRRSYYTAPIKALVSEKFFELVSIFGAGYVGMITG-DTRI 143
Query: 356 VPFSNHIACTVEMVSTD-----EMYDVAVI--DEIQMMSDACRGYAWTRALLGLMADEIH 408
P + I CT E+++ E D++ + DE D RG+AW LL L +
Sbjct: 144 NPQAPVICCTAEILANQALREGEKADISYVAMDEFHFYGDPDRGWAWQIPLLVLHNAQFL 203
Query: 409 L----CGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV--------- 455
L GD S D+ + TG + + + +P+ +E L++V
Sbjct: 204 LMSATLGDTS--DIAALVEGHTGRAV-DTVADAPRPVPLEYTYAAEPLQSVVNRLISRGQ 260
Query: 456 -------------------RSGDCVVAFSRREIFEVKMAIEKHTN-----------HHCC 485
SG V + +R+ +A K T +
Sbjct: 261 VPVYIVHFSQDAAVNTAEDLSGLGVSSKEQRDQIRKALAHTKFTTAFGKTLKRLLLNGVG 320
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P RR L QD V+ +D +G+G+N+ I VV +L+K++G +
Sbjct: 321 VHHAGMLPRYRRMVEQLA--QDGLLPVICGTDTLGVGINVPIHTVVLTALAKFDGRRQRR 378
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 379 LKAREFHQIAGRAGRSG 395
>gi|290962309|ref|YP_003493491.1| helicase [Streptomyces scabiei 87.22]
gi|260651835|emb|CBG74962.1| putative helicase [Streptomyces scabiei 87.22]
Length = 837
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 145/357 (40%), Gaps = 64/357 (17%)
Query: 264 PDEI-KRFRAMIESADLT-KPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEA--- 318
PD + + F A + LT PH V+ + PT SGK+ A A
Sbjct: 13 PDALYEAFEAWAQERGLTLYPHQEEALIEVVSGANVIVSTPTGSGKSMIATGAHFAALAR 72
Query: 319 -KKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKLVPFSNHIACTVEMVSTDEMY 375
+ Y +P++ L E F+ G +LTG + + + I CT E++++ +
Sbjct: 73 DEVTFYTAPIKALVSEKFFELCKIFGTENVGMLTG-DASVNADAPVICCTAEVLASIALR 131
Query: 376 D-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIHL----CGDPSVL--DVVRKI 422
D V+DE ++A RG+AW +L L + L GD S+ D+ R+
Sbjct: 132 DGKHADVGQVVMDEFHFYAEADRGWAWQIPILELPQAQFILMSATLGDVSMFEKDLTRRT 191
Query: 423 CSETGDELHEQHYERFKPLVVE------AKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI 476
T + R PL E +TL L ++ +V F++ + E A+
Sbjct: 192 GRPTS---VVRSATRPVPLSYEYVLTPLTETLTELLATKQAPVYIVHFTQAQAVERAQAL 248
Query: 477 -------------------------------EKHTNHHCCVIYGALPPETRRQQANLFND 505
++ H V + + P+ RR L
Sbjct: 249 MSINMCTREEKDRIAELIGSFRFTTKFGRNLSRYVRHGIGVHHAGMLPKYRRLVEKLA-- 306
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
Q V+ +D +G+G+N+ IR V+F +L+KY+G+++ + + QIAGRAGR G
Sbjct: 307 QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRTLRAREFHQIAGRAGRAG 363
>gi|326780780|ref|ZP_08240045.1| DEAD/DEAH box helicase domain protein [Streptomyces griseus
XylebKG-1]
gi|326661113|gb|EGE45959.1| DEAD/DEAH box helicase domain protein [Streptomyces griseus
XylebKG-1]
Length = 857
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTY----NALQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ + K Y +P++ L E FD G +LTG + +
Sbjct: 73 PTGSGKSLVAAAAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 131
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 132 NADAPVICCTAEVLASIALRDGKYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 191
Query: 409 L----CGDPSVL--DVVRKICSET-----GDELHEQHYE-RFKPLVVEAKTLLGDLRNVR 456
L GD S+ D+ R+ T YE RF P + E T L D R +
Sbjct: 192 LMSATLGDVSMFEKDLTRRTGRPTSVVRSATRPVPLSYEYRFTP-ITETLTELLDTR--Q 248
Query: 457 SGDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCC 485
S +V F++ + + + M + ++ H
Sbjct: 249 SPVYIVHFTQAAAVERAQSLMSINMCTKEEKERIADMIGGFRFTTKFGQNLSRYVRHGIG 308
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G ++
Sbjct: 309 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGTRVRT 366
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 367 LRAREFHQIAGRAGRAG 383
>gi|182440111|ref|YP_001827830.1| ATP-dependent helicase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178468627|dbj|BAG23147.1| putative ATP-dependent helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 857
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTY----NALQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ + K Y +P++ L E FD G +LTG + +
Sbjct: 73 PTGSGKSLVAAAAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 131
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 132 NADAPVICCTAEVLASIALRDGKYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 191
Query: 409 L----CGDPSVL--DVVRKICSET-----GDELHEQHYE-RFKPLVVEAKTLLGDLRNVR 456
L GD S+ D+ R+ T YE RF P + E T L D R +
Sbjct: 192 LMSATLGDVSMFEKDLTRRTGRPTSVVRSATRPVPLSYEYRFTP-ITETLTELLDTR--Q 248
Query: 457 SGDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCC 485
S +V F++ + + + M + ++ H
Sbjct: 249 SPVYIVHFTQAAAVERAQSLMSINMCTKEEKEKIADMIGGFRFTTKFGQNLSRYVRHGIG 308
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G ++
Sbjct: 309 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGTRVRT 366
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 367 LRAREFHQIAGRAGRAG 383
>gi|427390397|ref|ZP_18884803.1| hypothetical protein HMPREF9233_00306 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732712|gb|EKU95519.1| hypothetical protein HMPREF9233_00306 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 893
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 124/315 (39%), Gaps = 58/315 (18%)
Query: 302 PTNSGKTYNALQRFMEA----KKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTG----- 350
PT SGK+ AL A + Y +PL+ L E F+ ++A G ++TG
Sbjct: 63 PTGSGKSMIALIAIFYALAHGQTAFYTAPLKALVSEKFFELIDAFGADNVGMMTGDSTIN 122
Query: 351 QEKKLVPFSNHIACTVEM-VSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
+E +V + I + + +D D V DE D RG+AW LL L L
Sbjct: 123 REAPVVCATAEIVANIALREGSDAQIDALVQDEFHYYGDPQRGWAWQVPLLELPQTRQVL 182
Query: 410 C----GDPSVLDVVRKICSETGDELHE-QHYERFKPLVVE-----AKTLLGDLRNV-RSG 458
GD + ++ + TG + + ER PL E L+ +L R+
Sbjct: 183 LSATLGDTTRIE--EDLEKRTGRHVELISNAERPVPLQFEYSYEATNELVKELVETHRAP 240
Query: 459 DCVVAFSRREIFEVKMA-------------------------------IEKHTNHHCCVI 487
+V FS+RE E + + K V
Sbjct: 241 VYIVHFSQREAVETATSFQSMALISKEQKEAIREAIGNFKFSPGFGQILSKLLRQGIGVH 300
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+ L P RR L Q V+ +D +G+G+N+ IR V+ L+KY+G + +
Sbjct: 301 HAGLLPRYRRLVERLA--QGGYLPVISGTDTLGVGINVPIRTVLMTGLAKYDGSRSRQLK 358
Query: 548 GSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 359 AREFHQIAGRAGRAG 373
>gi|380302816|ref|ZP_09852509.1| superfamily II RNA helicase [Brachybacterium squillarum M-6-3]
Length = 850
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 141/380 (37%), Gaps = 82/380 (21%)
Query: 252 FPIFVEFCIEEFPDE-----IKRFRAMIES-ADLTKPHTWFPFARVMKRKIIYHCGPTNS 305
P F + PD+ + F A ES + PH + + PT S
Sbjct: 1 MPTLTPFLPPDLPDDGQDAIVDGFVAAQESMGRVLYPHQEEALLAIAAGDHVIAATPTGS 60
Query: 306 GKT----YNALQRFMEAKKGIYCSPLRLLAME-VFDKVNALGV-YCSLLTGQEKKLVPFS 359
GKT ++ Y +P++ L E FD V G ++TG
Sbjct: 61 GKTTIAYAAIFAAVARGQRAYYTAPIKALVSEKFFDLVAQFGAEMVGMMTGDSA-----V 115
Query: 360 NH----IACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
NH I CT E+++ + D +AV+DE D+ RG+AW L+ L +
Sbjct: 116 NHDAPIIVCTAEILANHSLRDGPTSEVGLAVMDEFHYYGDSQRGWAWQVPLIELPHTQFV 175
Query: 409 L----CGDPSVLDVVRKICSETGDELHE----------QHYERFKPLVVEAKTLLGDLRN 454
L GD V ++ + +G E+ +PL T+L D
Sbjct: 176 LMSATLGD--VTELTADLAERSGREVTVITDAPRPVPLDFRWSLEPLPDTITTILSD--- 230
Query: 455 VRSGDC-VVAFSRREIFEVKMAI---------EKH----------------------TNH 482
R +V F++++ E A+ EK
Sbjct: 231 -RDAPVYIVNFTQKDALEQAQALAGQKILTPEEKQQVRDIIGDFRFAKGFGQVLSRLVRE 289
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
V + + P+ RR L Q ++ +D +G+G+N+ IR V+ L+KY+G +
Sbjct: 290 GVGVHHAGMLPKYRRLVERLA--QSGLLKIISGTDTLGVGINVPIRTVLLTGLAKYDGRR 347
Query: 543 IIPVPGSQVKQIAGRAGRRG 562
+ + +QIAGRAGR G
Sbjct: 348 SRLLNAREFQQIAGRAGRAG 367
>gi|305681090|ref|ZP_07403897.1| DEAD/DEAH box helicase [Corynebacterium matruchotii ATCC 14266]
gi|305659295|gb|EFM48795.1| DEAD/DEAH box helicase [Corynebacterium matruchotii ATCC 14266]
Length = 847
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 131/316 (41%), Gaps = 59/316 (18%)
Query: 302 PTNSGKTYNALQ-RFMEAKKG---IYCSPLRLLAMEVFDKV-NALGVYCSLLTGQEKKLV 356
PT SGK+ A+ F+ +G Y +P++ L E F + + G + + +
Sbjct: 61 PTGSGKSMVAIAAHFIAMARGQRSFYTAPIKALVSEKFFALCDIFGPESVGMMTGDATVN 120
Query: 357 PFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
+ I T E+V+ + D V+DE SD RG+AW LL + + L
Sbjct: 121 SQAPIICATAEIVANMALRGGERAEIDQVVMDEFHYYSDPSRGWAWQVPLLEMPNTQFLL 180
Query: 410 ----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVE------AKTLLGDLRNVRS 457
G+ S+L D+ R+ T L +R PL E +T+ L+ ++
Sbjct: 181 MSATLGNTSMLQEDLTRRTGRVTS--LVGADADRPVPLDFEFVYTPIHETIERLLKEDKA 238
Query: 458 GDCVVAFSRREIFEVKMA------IEKHTNHHCC-------------------------V 486
VV F++RE E + I+K T V
Sbjct: 239 PVYVVHFTQREAVERAQSLTSLKIIDKETKEKIAEEIGDFRFTTTFGHTLSKLLRRGIAV 298
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+G + P+ RR L Q V+ +D +G+G+N+ IR V+F L+K++G + +
Sbjct: 299 HHGGMLPKYRRLVERL--SQTGLLKVICGTDTLGVGINVPIRTVLFTGLAKFDGSRRRIL 356
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 357 AAREFHQIAGRAGRAG 372
>gi|317126530|ref|YP_004100642.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315590618|gb|ADU49915.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 848
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 133/336 (39%), Gaps = 60/336 (17%)
Query: 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAMEVF-- 335
PH F V+ + PT SGK+ A E + Y +P++ L E F
Sbjct: 34 PHQDEAFLEVLSGSNLILSTPTGSGKSLVATAAHFTALAEDRVSFYTAPIKALVSEKFFA 93
Query: 336 --DKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMM 386
D+ A V ++TG + + + I CT E+++ + + + V+DE
Sbjct: 94 LCDQFGADNV--GMITG-DASVNADAPIICCTAEILANIALREGTAADIGLVVMDEFHFY 150
Query: 387 SDACRGYAWTRALLGLMADEIHL----CGDPSVL--DVVRKICSET----GDE------- 429
S+ RG+AW +L L + L GD ++ D+ R+ T G E
Sbjct: 151 SEPDRGWAWQVPILELPQAQFILMSATLGDVTMFRDDLTRRTGRSTAVIAGTERPVPLEF 210
Query: 430 ------LHEQHYERFK----PLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI--- 476
LHE E + P+ V T L +S V SR E + I
Sbjct: 211 AYAETPLHETIEELLEAQRAPIYVVHFTQASALERAQSLMAVKITSREERDTIAERIGAF 270
Query: 477 ----------EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526
+ H V + + P+ RR L QD V+ +D +G+G+N+
Sbjct: 271 RFGAGFGRTLSRLVRHGIGVHHAGMLPKYRRLVEQLA--QDGLLKVICGTDTLGVGINVP 328
Query: 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
IR V+ L+K++G K + + QI GRAGR G
Sbjct: 329 IRTVLLTGLTKFDGTKQRTLKAREFHQIVGRAGRAG 364
>gi|357414816|ref|YP_004926552.1| DEAD/DEAH box helicase [Streptomyces flavogriseus ATCC 33331]
gi|320012185|gb|ADW07035.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
ATCC 33331]
Length = 837
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 131/317 (41%), Gaps = 62/317 (19%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 53 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 111
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ IACT E++++ + D V+DE ++ RG+AW +L L +
Sbjct: 112 NADAPVIACTAEVLASIALRDGRYADIGQVVMDEFHFYAEPDRGWAWQIPILELPQAQFI 171
Query: 409 L----CGDPSVL--DVVRKICSET-----GDELHEQHYE-RFKPLVVEAKTLLGDLRNVR 456
L GD + D+ R+ T YE R P + E T L D R +
Sbjct: 172 LMSATLGDVRMFEEDLTRRTGRPTSVVRSATRPVPLSYEYRLTP-ITETLTELLDTR--Q 228
Query: 457 SGDCVVAFSR-------REIFEVKMA------------------------IEKHTNHHCC 485
S +V F++ + + + M + ++ H
Sbjct: 229 SPVYIVHFTQAAAVERAQSLMSINMCTKEEKEKIADLIGNFRFTTKFGQNLSRYVRHGIG 288
Query: 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545
V + + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G ++
Sbjct: 289 VHHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGTRVRT 346
Query: 546 VPGSQVKQIAGRAGRRG 562
+ + QIAGRAGR G
Sbjct: 347 LRAREFHQIAGRAGRAG 363
>gi|269794417|ref|YP_003313872.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269096602|gb|ACZ21038.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
Length = 869
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 132/320 (41%), Gaps = 64/320 (20%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A E K+ Y +PL+ L E F V G ++TG + +
Sbjct: 66 PTGSGKSLVATGAHYVAMAEGKRSFYTAPLKALVSEKFFALVEVFGSENVGMMTG-DSSV 124
Query: 356 VPFSNHIACTVEMVST-----------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
P + I CT E+++ D D V+DE +D RG+AW LL L
Sbjct: 125 NPTAPIICCTAEILANIALRTGGVDADDPGVDQVVMDEFHFYADPQRGWAWQVPLLELPK 184
Query: 405 DEIHL----CGDPSVLDVVRKICSETGDELHE-QHYERFKPL----VVEA-KTLLGDLRN 454
+ L GD + + TG + E +R PL V+E ++ DL +
Sbjct: 185 AQFLLMSATLGDTEMFRT--DLEERTGRTVAEVTSVDRPVPLSFSYVIEPLGEVIEDLVH 242
Query: 455 V-RSGDCVVAFSRREIF--------------EVKMAI-----------------EKHTNH 482
R+ VV F++++ E K AI K+
Sbjct: 243 THRAPVYVVHFTQKDAVDRAQSLLSTNLASKEEKAAIVAELGDFRFTSGFGKSLSKYLRA 302
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
V + + P+ RR L Q V+ +D +G+G+N+ IR V+ S+ K++G++
Sbjct: 303 GIGVHHAGMLPKYRRVVERL--TQKGLLKVVCGTDTLGVGINVPIRTVLLTSVVKFDGER 360
Query: 543 IIPVPGSQVKQIAGRAGRRG 562
+ + + QIAGRAGR G
Sbjct: 361 MRHLTAREFHQIAGRAGRAG 380
>gi|184200844|ref|YP_001855051.1| putative helicase [Kocuria rhizophila DC2201]
gi|183581074|dbj|BAG29545.1| putative helicase [Kocuria rhizophila DC2201]
Length = 870
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 121/314 (38%), Gaps = 56/314 (17%)
Query: 302 PTNSGKTYNALQR----FMEAKKGIYCSPLRLLAME-VFDKVNALGVYCSLLTGQEKKLV 356
PT SGK+ A+ ++ Y +P++ L E FD G + + +
Sbjct: 70 PTGSGKSTVAVAAHFAGLARGQRSYYTAPIKALVSEKFFDLCEIFGAENVGMVTGDSAVN 129
Query: 357 PFSNHIACTVEMVST-------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
+ + CT E+++ D + V+DE SD RG+AW L+ L + L
Sbjct: 130 ADAPIVCCTAEILANVALREGRDADLGLVVMDEFHFYSDPQRGWAWQVPLIELPQAQFLL 189
Query: 410 CGDPSVLDVVR---KICSETG-------------------------DELHEQHYERFKPL 441
++ DV R ++ TG +EL E P+
Sbjct: 190 MS-ATLGDVTRIEQRLTETTGRATSLVSSGERPIPLHFYYSERPIHEELEELLTTHQAPV 248
Query: 442 VVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIE-------------KHTNHHCCVIY 488
V + L +S V S+ E V I+ + H V +
Sbjct: 249 YVVHFSQLAAAEQAQSLMSVDVLSKEEKQRVAELIKDFRFSAGFGKTLNRLVRHGIGVHH 308
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548
+ P+ RR L Q V+ +D +G+G+N+ IR V+ +LSKY+G + +
Sbjct: 309 AGMLPKYRRLVEQLA--QTGLLKVICGTDTLGVGINVPIRTVLITALSKYDGRRTRRLSA 366
Query: 549 SQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 367 REFHQIAGRAGRAG 380
>gi|302532960|ref|ZP_07285302.1| ATP-dependent helicase [Streptomyces sp. C]
gi|302441855|gb|EFL13671.1| ATP-dependent helicase [Streptomyces sp. C]
Length = 843
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 127/316 (40%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 56 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 114
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 115 NADAPVICCTAEVLASIALRDGKYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFV 174
Query: 409 L------------------CGDPSVLDVVRK-----------ICSETGDELHEQHYERFK 439
L G P+ VVR + + D + E R
Sbjct: 175 LMSATLGDVKRFEEDLTRRTGRPT--SVVRSATRPVPLSYEYVTTPITDTITELLETRQA 232
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREI-----------FEVKMA--IEKHTNHHCCV 486
P+ + T + +S + +R E F K + ++ H V
Sbjct: 233 PVYIVHFTQAQAVERAQSLMSINMCTREEKDKIAELIGNFRFTTKFGQNLSRYVRHGIGV 292
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++ +
Sbjct: 293 HHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRTL 350
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 351 RAREFHQIAGRAGRAG 366
>gi|225021241|ref|ZP_03710433.1| hypothetical protein CORMATOL_01253 [Corynebacterium matruchotii
ATCC 33806]
gi|224945974|gb|EEG27183.1| hypothetical protein CORMATOL_01253 [Corynebacterium matruchotii
ATCC 33806]
Length = 849
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 131/316 (41%), Gaps = 59/316 (18%)
Query: 302 PTNSGKTYNALQ-RFMEAKKG---IYCSPLRLLAMEVFDKV-NALGVYCSLLTGQEKKLV 356
PT SGK+ A+ F+ +G Y +P++ L E F + + G + + +
Sbjct: 63 PTGSGKSMVAIAAHFIAMARGQRSFYTAPIKALVSEKFFALCDIFGPESVGMMTGDATVN 122
Query: 357 PFSNHIACTVEMVSTDEM-------YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
+ I T E+V+ + D V+DE SD RG+AW LL + + L
Sbjct: 123 SQAPIICATAEIVANMALRGGERAEIDQVVMDEFHYYSDPSRGWAWQVPLLEMPNTQFLL 182
Query: 410 ----CGDPSVL--DVVRKICSETGDELHEQHYERFKPLVVE------AKTLLGDLRNVRS 457
G+ S+L D+ R+ T L +R PL E +T+ L+ ++
Sbjct: 183 MSATLGNTSMLQEDLTRRTGRVTS--LVGADADRPVPLDFEFVYTPIHETIERLLKEDKA 240
Query: 458 GDCVVAFSRREIFEVKMA------IEKHTNHHCC-------------------------V 486
VV F++RE E + I+K T V
Sbjct: 241 PVYVVHFTQREAVERAQSLTSLKIIDKETKEKIAEEIGDFRFTTTFGHTLSKLLRRGIAV 300
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+G + P+ RR L Q V+ +D +G+G+N+ IR V+F L+K++G + +
Sbjct: 301 HHGGMLPKYRRLVERL--SQTGLLKVICGTDTLGVGINVPIRTVLFTGLAKFDGSRRRIL 358
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 359 ASREFHQIAGRAGRAG 374
>gi|254385724|ref|ZP_05001046.1| ATP-dependent helicase [Streptomyces sp. Mg1]
gi|194344591|gb|EDX25557.1| ATP-dependent helicase [Streptomyces sp. Mg1]
Length = 843
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 127/316 (40%), Gaps = 60/316 (18%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAME-VFDKVNALGVY-CSLLTGQEKKL 355
PT SGK+ A + K Y +P++ L E FD G +LTG + +
Sbjct: 56 PTGSGKSLVAAGAHFTALAQDKVTFYTAPIKALVSEKFFDLCKLFGTENVGMLTG-DASV 114
Query: 356 VPFSNHIACTVEMVSTDEMYD-------VAVIDEIQMMSDACRGYAWTRALLGLMADEIH 408
+ I CT E++++ + D V+DE ++ RG+AW LL L +
Sbjct: 115 NADAPVICCTAEVLASIALRDGKYADIGQVVMDEFHFYAEPDRGWAWQIPLLELPQAQFI 174
Query: 409 L------------------CGDPSVLDVVRK-----------ICSETGDELHEQHYERFK 439
L G P+ VVR + + D + E R
Sbjct: 175 LMSATLGDMKRFEEDLTRRTGRPT--SVVRSASRPVPLSYEYVTTPITDTITELLETRQS 232
Query: 440 PLVVEAKTLLGDLRNVRSGDCVVAFSRREI-----------FEVKMA--IEKHTNHHCCV 486
P+ + T + +S + +R E F K + ++ H V
Sbjct: 233 PVYIVHFTQAQAVERAQSLMSINMCTREEKDKIAELIGNFRFTTKFGQNLSRYVRHGIGV 292
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPV 546
+ + P+ RR L Q V+ +D +G+G+N+ IR V+F +L+KY+G+++ +
Sbjct: 293 HHAGMLPKYRRLVEKLA--QAGLLKVICGTDTLGVGVNVPIRTVLFTALTKYDGNRVRTL 350
Query: 547 PGSQVKQIAGRAGRRG 562
+ QIAGRAGR G
Sbjct: 351 RAREFHQIAGRAGRAG 366
>gi|170094382|ref|XP_001878412.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646866|gb|EDR11111.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 112
Score = 65.5 bits (158), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339
M RK+I H GPTNSGKT++AL+ +K+G+Y PLRLLA EV++++N
Sbjct: 1 MHRKVIMHVGPTNSGKTHHALRALAASKRGVYAGPLRLLAHEVWERLN 48
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,484,944,194
Number of Sequences: 23463169
Number of extensions: 526695383
Number of successful extensions: 1209168
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2643
Number of HSP's successfully gapped in prelim test: 513
Number of HSP's that attempted gapping in prelim test: 1201436
Number of HSP's gapped (non-prelim): 4809
length of query: 809
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 658
effective length of database: 8,816,256,848
effective search space: 5801097005984
effective search space used: 5801097005984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)