BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003587
(809 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/568 (40%), Positives = 339/568 (59%), Gaps = 39/568 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 74 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 129
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 130 CKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 183
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VA
Sbjct: 184 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVA 243
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 244 VIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRL 303
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 304 TPISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 361
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 362 QAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421
Query: 554 IAGRAGRRGSIYPDGXXXXXXXXXXXXXIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G E LK+P + ++ GL P EQ+E+FA L +
Sbjct: 422 IAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPD 481
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 482 ATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 540
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 541 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRF 600
Query: 729 KEEVFPYAKKAEAMATDIAELLGQSLTN 756
++FP A + ++ ++ + N
Sbjct: 601 M-DMFPDASLIRDLQKELDGIIQDGVHN 627
>pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 402 bits (1032), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/568 (40%), Positives = 332/568 (58%), Gaps = 39/568 (6%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y + DV ++V +DD LFP F+ + FP
Sbjct: 74 LFHQAFISFRNYIXQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 129
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR +RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 130 CKDDLRKI------SDLRIPPNWYPDARAXQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 183
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVE S Y+VA
Sbjct: 184 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEXCSVTTPYEVA 243
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQ + D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 244 VIDEIQXIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVXELXYTTGEEVEVRDYKRL 303
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 304 TPISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 361
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+G GLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 362 QAKKFNDPNDPCKILVATDAIGXGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421
Query: 554 IAGRAGRRGSIYPDGXXXXXXXXXXXXXIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G E LK+P + ++ GL P EQ+E FA L +
Sbjct: 422 IAGRAGRFSSRFKEGEVTTXNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEXFAYHLPD 481
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 482 ATLSNLIDIFVDFSQVDGQYFVCNXDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 540
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L DLE H VL +YLWLS++F
Sbjct: 541 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLXDLEAVHDVLDLYLWLSYRF 600
Query: 729 KEEVFPYAKKAEAMATDIAELLGQSLTN 756
+ FP A + ++ ++ + N
Sbjct: 601 XDX-FPDASLIRDLQKELDGIIQDGVHN 627
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKI 543
V +G L P + LF+ VL A++ MGLNL R V+F S+ K++G+ +
Sbjct: 402 IAVHHGGLLPIVKELIEILFSK--GFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGL 459
Query: 544 IPVPGSQVKQIAGRAGRRG 562
+ + Q+AGRAGRRG
Sbjct: 460 RELTPGEFTQMAGRAGRRG 478
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
pdb|2XGJ|B Chain B, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna
Processing And Surveillance
Length = 1010
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
Q+ VL A++ +GLN+ + VVF S+ K++G + V G + Q++GRAGRRG
Sbjct: 429 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 485
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear
Exosome
Length = 1108
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
Q+ VL A++ +GLN+ + VVF S+ K++G + V G + Q++GRAGRRG
Sbjct: 527 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG- 540
HH ++ G RR + F + V+VA+ + G+NL RRV+ SL +++G
Sbjct: 302 HHAGLLNG-----QRRVVEDAF--RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY 354
Query: 541 DKIIPVPGSQVKQIAGRAGRRG 562
K I V S+ KQ+AGRAGR G
Sbjct: 355 SKRIKV--SEYKQMAGRAGRPG 374
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 302 PTNSGKTYNA----LQRFMEAKKGIYCSPLRLLA---MEVFDKVNALGVYCSLLTGQEKK 354
PT +GKT A ++ ++ K +Y PLR LA E F K +G+ + TG +
Sbjct: 48 PTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYE- 106
Query: 355 LVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL 409
H+ +V+T E D + + +W +A+ L+ DEIHL
Sbjct: 107 --SRDEHLGDCDIIVTTSEKADSLIRNRA----------SWIKAVSCLVVDEIHL 149
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 302 PTNSGKTYNA----LQRFM-EAKKGIYCSPLRLLAMEVFDKVN---ALGVYCSLLTGQEK 353
PT SGKT A + R + + K +Y PL+ LA E F + +G+ ++ TG
Sbjct: 47 PTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATG--- 103
Query: 354 KLVPFSNHIACTVEMVSTDEM---YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
+ S DE YD+ + + S G +W + + L+ADEIHL
Sbjct: 104 -------------DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150
Query: 411 G 411
G
Sbjct: 151 G 151
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 513 LVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
+VA+ + G+N RV+ + +Y+ + +P +V Q+ GRAGR
Sbjct: 324 VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGR 371
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKII----PVPGSQVKQIAGRAGRRG 562
V+VA+ + G+NL R V+ + ++N KI +P + KQ++GRAGR G
Sbjct: 341 VIVATPTLAAGVNLPARTVIIGDIYRFN-KKIAGYYDEIPIMEYKQMSGRAGRPG 394
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520
+ FS+++ +V ++++ + H + L PE + ++ NE V+VA+ A G
Sbjct: 272 IYCFSQKDSEQVTVSLQ-NLGIHAGAYHANLEPEDKTTVHRKWSA--NEIQVVVATVAFG 328
Query: 521 MGLNL-NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR 560
MG++ ++R V+ +S+SK Q +GRAGR
Sbjct: 329 MGIDKPDVRFVIHHSMSK---------SMENYYQESGRAGR 360
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 300 CGPTNSGKTYNALQRFMEAK---------------KGIYCSPLRLLAMEVF----DKVNA 340
C PT +GKT AL + K IY +P+R L E+ ++
Sbjct: 101 CAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160
Query: 341 LGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
G+ + LTG + I+ T +V T E +D+ ++ +T+ +
Sbjct: 161 YGITVAELTGDHQLC---KEEISATQIIVCTPEKWDI--------ITRKGGERTYTQLVR 209
Query: 401 GLMADEIHLCGD 412
++ DEIHL D
Sbjct: 210 LIILDEIHLLHD 221
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD--KII 544
++ L P RR LF+ V+VAS ++ G+N+ V+ YNG +
Sbjct: 1219 LHEGLSPMERRLVEQLFSS--GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276
Query: 545 PVPGSQVKQIAGRAGR 560
P V Q+ G A R
Sbjct: 1277 DYPIYDVLQMVGHANR 1292
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 30/132 (22%)
Query: 300 CGPTNSGKTYNALQRFMEAK---------------KGIYCSPLRLLAMEVF----DKVNA 340
C PT +GKT AL + K IY +P+R L E+ ++
Sbjct: 101 CAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT 160
Query: 341 LGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400
G+ + LTG + I+ T +V T E +D+ ++ +T+ +
Sbjct: 161 YGITVAELTGDHQLC---KEEISATQIIVCTPEKWDI--------ITRKGGERTYTQLVR 209
Query: 401 GLMADEIHLCGD 412
++ DEIHL D
Sbjct: 210 LIILDEIHLLHD 221
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD--KII 544
++ L P RR LF+ V+VAS ++ G+N+ V+ YNG +
Sbjct: 1219 LHEGLSPMERRLVEQLFSS--GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276
Query: 545 PVPGSQVKQIAGRAGR 560
P V Q+ G A R
Sbjct: 1277 DYPIYDVLQMVGHANR 1292
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 489 GALPPETRRQQANLFNDQD-NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
G +P RR + FN D N+F L+++ A G+G+NL V S +N P
Sbjct: 604 GTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWN-----PQA 658
Query: 548 GSQVKQIAGRAGRRGSI 564
Q A R G++ +
Sbjct: 659 DLQAMARAHRIGQKNHV 675
>pdb|3BGY|A Chain A, Triclinic Structure Of Mimivirus Capping Enzyme
Triphosphatase At 1.65 A
pdb|3BGY|B Chain B, Triclinic Structure Of Mimivirus Capping Enzyme
Triphosphatase At 1.65 A
Length = 237
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 208 VYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDD 246
VY F G+F + F K +D+++Y+V L PSDD
Sbjct: 83 VYRVSLFNQEQIGEFITKFSKASSNDISRYIVSLDPSDD 121
>pdb|2QY2|A Chain A, Characterization Of A Trifunctional Mimivirus Mrna Capping
Enzyme And Crystal Structure Of The Rna Triphosphatase
Domainm.
pdb|2QY2|B Chain B, Characterization Of A Trifunctional Mimivirus Mrna Capping
Enzyme And Crystal Structure Of The Rna Triphosphatase
Domainm.
pdb|2QZE|A Chain A, Monoclinic Mimivirus Capping Enzyme Triphosphatase.
pdb|2QZE|B Chain B, Monoclinic Mimivirus Capping Enzyme Triphosphatase
Length = 238
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 208 VYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDD 246
VY F G+F + F K +D+++Y+V L PSDD
Sbjct: 84 VYRVSLFNQEQIGEFITKFSKASSNDISRYIVSLDPSDD 122
>pdb|4F1Z|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F20|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
pdb|4F24|A Chain A, Crystal Structures Reveal The Multi-Ligand Binding
Mechanism Of The Staphylococcus Aureus Clfb
Length = 363
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 159 LSTRDPVEVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTA 218
L+ +PV + + T K+ SDF++ + F NQ+ ++ +F T
Sbjct: 19 LAVAEPVVNAADAKGTNVNDKVTASDFKLEKTAFD--------PNQSGNTFMAANFKVTG 70
Query: 219 AGKFRSYFIKKCPDDVA 235
K YF K PD V
Sbjct: 71 QVKSGDYFTAKLPDSVT 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,515,258
Number of Sequences: 62578
Number of extensions: 976279
Number of successful extensions: 1937
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1906
Number of HSP's gapped (non-prelim): 23
length of query: 809
length of database: 14,973,337
effective HSP length: 107
effective length of query: 702
effective length of database: 8,277,491
effective search space: 5810798682
effective search space used: 5810798682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)