BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003587
(809 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IYB8|SUV3_HUMAN ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens
GN=SUPV3L1 PE=1 SV=1
Length = 786
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/548 (43%), Positives = 340/548 (62%), Gaps = 39/548 (7%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP--- 264
F A FR+Y ++ DV ++V +DD LFP F+ + FP
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADD----LFPFFLRHAKQIFPVLD 174
Query: 265 --DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGI 322
D++++ +DL P W+P AR M+RKII+H GPTNSGKTY+A+Q++ AK G+
Sbjct: 175 CKDDLRKI------SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGV 228
Query: 323 YCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVA 378
YC PL+LLA E+F+K NA GV C L+TG+E+ V ++H++CTVEM S Y+VA
Sbjct: 229 YCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVA 288
Query: 379 VIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERF 438
VIDEIQM+ D RG+AWTRALLGL A+E+HLCG+P+ +D+V ++ TG+E+ + Y+R
Sbjct: 289 VIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRL 348
Query: 439 KPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQ 498
P+ V L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+
Sbjct: 349 TPISV-LDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLA 406
Query: 499 QANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQ 553
QA FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G++ + P+ SQ Q
Sbjct: 407 QAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQ 466
Query: 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSN 613
IAGRAGR S + +G TT+N +DL L E LK+P + ++ GL P EQ+E+FA L +
Sbjct: 467 IAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPD 526
Query: 614 YTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPK 673
T L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 527 ATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPF 585
Query: 674 AMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
LL+FA YS+N P++ A + P KN +L+DLE H VL +YLWLS++F
Sbjct: 586 VCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRF 645
Query: 729 KEEVFPYA 736
++FP A
Sbjct: 646 M-DMFPDA 652
>sp|Q5EBA1|SUV3_RAT ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus
norvegicus GN=Supv3l1 PE=2 SV=1
Length = 776
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/564 (41%), Positives = 346/564 (61%), Gaps = 31/564 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV ++V + S V LFP F+ + FP D+
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL +P W+P AR ++RKII+H GPTNSGKTY+A+QR++ A G+YC P
Sbjct: 179 LRQI------SDLRRPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H++CTVEM + Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +D+V ++ TG+E+ Q YER P+
Sbjct: 293 IQMIRDPARGWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTGEEVEVQKYERLTPIS 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V + L L N+R GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 VLDRA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQARK 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIAGR
Sbjct: 411 FNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT++ DDL L E L +P + ++ GL P EQ+E+FA L T
Sbjct: 471 AGRFSSHFKEGEVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 NLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H V +YLWLS++F ++
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFI-DM 648
Query: 733 FPYAKKAEAMATDIAELLGQSLTN 756
FP + ++ ++ ++ + + N
Sbjct: 649 FPDSSFVRSLQKELDVIIQEGVHN 672
>sp|Q80YD1|SUV3_MOUSE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Mus musculus
GN=Supv3l1 PE=2 SV=1
Length = 779
Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/564 (41%), Positives = 343/564 (60%), Gaps = 31/564 (5%)
Query: 214 FFPTAAGKFRSYFIKKCPDDVAQYLVW--LGPSDDAVKFLFPIFVEFCIEEFP-----DE 266
F A FR+Y ++ DV ++V + S V LFP F+ + FP D+
Sbjct: 119 LFHQAFISFRNYIMQSHSLDVDIHIVLNDICFSAAHVDDLFPFFLRHAKQIFPVLECKDD 178
Query: 267 IKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSP 326
+++ +DL P W+P AR +RKII+H GPTNSGKTY+A+QR++ A G+YC P
Sbjct: 179 LRKI------SDLRIPPNWYPEARARQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGP 232
Query: 327 LRLLAMEVFDKVNALGVYCSLLTGQEKKLV----PFSNHIACTVEMVSTDEMYDVAVIDE 382
L+LLA E+F+K NA GV C L+TG+E+ V + H++CTVEM + Y+VAVIDE
Sbjct: 233 LKLLAHEIFEKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDE 292
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV 442
IQM+ D RG+AWTRALLGL A+E+HLCG+ + +++V ++ TG+E+ Q YER P+
Sbjct: 293 IQMIRDPARGWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPIS 352
Query: 443 VEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502
V L L N++ GDC+V FS+ +I+ V IE VIYG+LPP T+ QA
Sbjct: 353 V-LDHALESLDNLQPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLPPGTKLAQARK 410
Query: 503 FNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----GDK-IIPVPGSQVKQIAGR 557
FND ++ +LVA+DA+GMGLNL+IRR++FYSL K + G+K + P+ SQ QIAGR
Sbjct: 411 FNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGR 470
Query: 558 AGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFC 617
AGR S + +G TT++ DDL L + L +P + ++ GL P EQ+E+FA L T
Sbjct: 471 AGRFSSHFKEGQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLS 530
Query: 618 QLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYH 677
L++ F + ++DG YF+C D K A +++ + LSL R+ FC AP+N + P
Sbjct: 531 NLIDIFVDFAQVDGQYFVCNMDDFKFSAELIQHIP-LSLRVRYVFCTAPINKKQPFVCSS 589
Query: 678 LLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEV 732
LL+FA YS+N P++ A + P KN +L+DLE H V +YLWLS++F ++
Sbjct: 590 LLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVFDLYLWLSYRFI-DM 648
Query: 733 FPYAKKAEAMATDIAELLGQSLTN 756
FP + ++ ++ ++ + + N
Sbjct: 649 FPDSSLVRSLQKELDAIIQEGVHN 672
>sp|Q5ZJT0|SUV3_CHICK ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus
GN=SUPV3L1 PE=2 SV=1
Length = 794
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 254/670 (37%), Positives = 376/670 (56%), Gaps = 57/670 (8%)
Query: 166 EVFGEL-RSTEKGAKI-NRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFR 223
+V EL R +KG + N + F +E+ R + +G A F A FR
Sbjct: 67 DVGAELTRPLDKGEVLKNLNKFYKRKEIQRLGTENGLDAR----------LFHQAFISFR 116
Query: 224 SYFIKKCPDDVAQYLVW------LGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRA 272
Y ++ +++ G DD LFP F+ + FP D++++
Sbjct: 117 KYIMESSSVSADLHIILNDICCGAGHVDD----LFPFFLRHAKQIFPMLDCMDDLRKI-- 170
Query: 273 MIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAM 332
+DL P W+P AR ++RKII+H GPTNSGKTY+A+QRF+ AK GIYC PL+LLA
Sbjct: 171 ----SDLRLPPNWYPEARAIQRKIIFHAGPTNSGKTYHAIQRFLSAKSGIYCGPLKLLAH 226
Query: 333 EVFDKVNALGVYCSLLTGQEK----KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388
E+F K NA V C L+TG+E+ + ++HIACT+EM ST+ Y+VAVIDEIQM+ D
Sbjct: 227 EIFQKSNAANVPCDLVTGEERVYASEDAKQASHIACTIEMCSTNTPYEVAVIDEIQMIRD 286
Query: 389 ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTL 448
RG+AWTRALLGL A+EIH+CG+ + +D+V ++ TG+E+ ++Y+R PL V
Sbjct: 287 PARGWAWTRALLGLCAEEIHVCGEGAAIDLVTELMYTTGEEVEVRNYKRLTPLTV-LDYA 345
Query: 449 LGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN 508
L L N++ GDC+V FS+ +I+ V IE C VIYG+LPP T+ +QA FND ++
Sbjct: 346 LESLDNLQPGDCIVCFSKNDIYSVSRQIEAR-GLECAVIYGSLPPGTKLEQAKKFNDPND 404
Query: 509 EFDVLVASDAVGMGLNLNIRRVVFYSLSK----YNGDK-IIPVPGSQVKQIAGRAGRRGS 563
+LVA+DA+GMGLNL I+R++F S+ K G+K I + SQ QIAGRAGR GS
Sbjct: 405 PCKILVATDAIGMGLNLCIKRIIFNSIVKPTVNEKGEKEIDSITTSQALQIAGRAGRFGS 464
Query: 564 IYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKF 623
+ G T ++ DDL L E L + VK GL P EQ+E+FA L + T L++ F
Sbjct: 465 SFKQGEVTAMHRDDLLQLKEILSEAVPPVKAAGLHPTPEQIEMFAYHLPDATLSNLIDIF 524
Query: 624 GENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFAS 683
++DG YF+C D K +A+M++ + L+L R+ FC AP+N ++P LL+FA
Sbjct: 525 VSLSQVDGLYFVCNIDDFKFLADMIQHIP-LNLRSRYVFCTAPLNRKEPFVCTTLLKFAR 583
Query: 684 SYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKK 738
+S+N P++ P KN EL+ LE H V +YLWLS++F ++FP A
Sbjct: 584 QFSRNEPLTFDWLCRHTKWPLAPPKNIKELVHLEAVHDVFDLYLWLSYRFM-DMFPDAAL 642
Query: 739 AEAMATDIAELLGQSLTNANWKPESRQAG-KPKLHQQREDGYDRPRS-----IIKSYENR 792
+ + +++ + N + Q+G P + +G+ R+ + + +
Sbjct: 643 VRDIQKKLDDIIQIGVCNITKLIRASQSGAAPGAAEVMSEGFPLSRTKRDARTVSDHRDA 702
Query: 793 KRQEKTSLTL 802
K E S+ L
Sbjct: 703 KSAEPLSIAL 712
>sp|A4IG62|SUV3_DANRE ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Danio rerio
GN=supv3l1 PE=2 SV=1
Length = 763
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 231/588 (39%), Positives = 350/588 (59%), Gaps = 40/588 (6%)
Query: 186 EVLREVFRFFSN---SGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVW-- 240
E+L+ + RF+ A++Q L + F A FR Y ++ + +++
Sbjct: 90 ELLKVLNRFYKRKEMQKLASDQGLDARL----FHQAFVSFRKYVLEMNSLNADLHIILND 145
Query: 241 ----LGPSDDAVKFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKR 294
G DD +FP F+ + FP D I R + +DL P W+P AR ++R
Sbjct: 146 ICCGAGHIDD----IFPYFMRHAKQIFPMLDCIDDLRKI---SDLRVPANWYPEARAIQR 198
Query: 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK 354
KI++H GPTNSGKTY+A++R++EAK G+YC PL+LLA E+++K NA GV C L+TG+E+
Sbjct: 199 KIVFHAGPTNSGKTYHAIKRYLEAKSGVYCGPLKLLAHEIYEKSNAAGVPCDLVTGEERI 258
Query: 355 LV----PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
V S HIA T+EM S Y+VAVIDEIQM+ D RG+AWTRALLGL A+EIH+C
Sbjct: 259 FVDPEGKPSGHIASTIEMCSVTTPYEVAVIDEIQMIKDPARGWAWTRALLGLCAEEIHVC 318
Query: 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIF 470
G+ + +D + ++ TG+E+ +Y+R P + + + L N++ GDC+V FS+ +I+
Sbjct: 319 GEAAAVDFITELMFTTGEEVEVHNYKRLTPFSI-SNHAVESLDNLKPGDCIVCFSKNDIY 377
Query: 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530
+ IE C VIYG+LPP T+ QA FND D+ +LVA+DA+GMGLNL+IRR+
Sbjct: 378 SISRQIEIR-GLECAVIYGSLPPGTKLAQAKKFNDPDDPCKILVATDAIGMGLNLSIRRI 436
Query: 531 VFYSLSKYN----GDK-IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585
+F SL K++ G+K + + SQ QIAGRAGR S++ +G TT++ DDL L E L
Sbjct: 437 IFNSLVKHSLNEKGEKEVDTISTSQALQIAGRAGRFSSVFKEGEVTTMHRDDLPVLKEIL 496
Query: 586 KQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645
+P + + GL P EQ+E+FA L T L++ F ++DG YF+C D K +A
Sbjct: 497 GKPVDPIATAGLHPTAEQIEMFAYHLPQATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLA 556
Query: 646 NMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKG 700
+M++ + L+L R+ FC AP+N + P L+FA +S++ P++ + P
Sbjct: 557 DMIQHIP-LNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSRDEPLTFNWVCRQVNWPLS 615
Query: 701 SAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAE 748
KN +L+ LE H VL +YLWLS++F ++FP + + + ++ E
Sbjct: 616 PPKNIKDLVHLEAVHDVLDLYLWLSYRFM-DMFPDSNQIREIQKELDE 662
>sp|Q9VN03|SUV3_DROME ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Drosophila melanogaster GN=CG9791 PE=2 SV=3
Length = 763
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/560 (40%), Positives = 325/560 (58%), Gaps = 34/560 (6%)
Query: 218 AAGKFRSYFIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRF 270
A G FR + I+ P D+ + + +FP F+ FP D++K+
Sbjct: 110 AFGSFRRFCIEAENLPVDLHITFSDITQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI 169
Query: 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLL 330
+DL +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LL
Sbjct: 170 ------SDLRQPANWYSNARAITRKIVFHAGPTNSGKTYHAMERYLSAKTGVYCGPLKLL 223
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQM 385
A EV++K N G C L+TG+E+K +P +NH+ACTVEM S + Y+VAVIDEIQ
Sbjct: 224 ATEVYNKANERGTPCDLVTGEERKFGISESLP-ANHVACTVEMTSVNTPYEVAVIDEIQQ 282
Query: 386 MSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEA 445
+ D RG+AWTRA LGL+ADE+H+CG+P LD+++KIC TG+ + + Y+R L VE
Sbjct: 283 IRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTGETVEVRLYDRLTELTVE- 341
Query: 446 KTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND 505
T LG L N+ GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND
Sbjct: 342 NTALGSLDNIVPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFND 400
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGR 560
N V+VA+DA+GMGLNL+IRR++FYSL K + + +I + S QIAGRAGR
Sbjct: 401 PANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREIDTISVSSALQIAGRAGR 460
Query: 561 RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLL 620
+ + G T +DL L L + E +K+ GL P +Q+EL+A L + + L+
Sbjct: 461 FRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQIELYAYHLPSSSLSNLM 520
Query: 621 EKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLL 679
+ F C +D S YF+C + K +A M++ V L L R+ FC AP+N + P L
Sbjct: 521 DIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHV-ALPLRARYVFCCAPINRKMPFVCSMFL 579
Query: 680 RFASSYSKNAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734
+ A YS+N P++ G P K +L+ LE V+ +YLWLS++F ++FP
Sbjct: 580 KVARQYSRNEPITFDFIKKNCGWPFKLPKTILDLVHLEAVFDVMDLYLWLSYRFM-DLFP 638
Query: 735 YAKKAEAMATDIAELLGQSL 754
A ++ E++ Q +
Sbjct: 639 EAAYVRDAQKELDEIIQQGV 658
>sp|Q295E6|SUV3_DROPS ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Drosophila pseudoobscura pseudoobscura GN=GA22038
PE=3 SV=1
Length = 762
Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/645 (37%), Positives = 349/645 (54%), Gaps = 55/645 (8%)
Query: 166 EVFGELRSTEKGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSY 225
E+ G+L +E +N+ F RE S +G L Y+ + F G FR Y
Sbjct: 70 ELVGKLEKSELLKILNK--FTQRRETKSLCSENG------LDSYLQQQAF----GSFRRY 117
Query: 226 FIK--KCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFP-----DEIKRFRAMIESAD 278
I+ P D+ + + +FP F+ FP D++K+ +D
Sbjct: 118 CIEAENLPVDLHIIFSDIMQGAGHIDDIFPYFLRHAKTVFPHLDCMDDLKKI------SD 171
Query: 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKV 338
L +P W+ AR + RKI++H GPTNSGKTY+A++R++ AK G+YC PL+LLA EV++K
Sbjct: 172 LRQPANWYTNARALTRKIVFHSGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKA 231
Query: 339 NALGVYCSLLTGQEKKL-----VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGY 393
N G C L+TG+E+K P +NH+ACTVEM S + Y+VAVIDEIQ + D RG+
Sbjct: 232 NERGTPCDLVTGEERKFGISDNSP-ANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGW 290
Query: 394 AWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLR 453
AWTRA LGL+ADE+H+CG+ L++++KIC TG+ + + Y+R L VE + LG L
Sbjct: 291 AWTRAFLGLIADEVHVCGEAGALELLQKICETTGETVEVRRYDRLTELTVE-DSALGSLD 349
Query: 454 NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513
NV GDC+V FS+ +I+ V IE VIYG LPP T+ QA FND N V+
Sbjct: 350 NVMPGDCIVCFSKHDIYTVSREIEAR-GKEVAVIYGGLPPGTKLAQAAKFNDPANSCKVM 408
Query: 514 VASDAVGMGLNLNIRRVVFYSLSKYNGD-----KIIPVPGSQVKQIAGRAGRRGSIYPDG 568
VA+DA+GMGLNL+IRR++FYSL K + +I + S QIAGRAGR + + G
Sbjct: 409 VATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREIDTISVSSALQIAGRAGRFRTQWEHG 468
Query: 569 LTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
T +DL L L Q E +K+ GL P +Q+EL+A L N + L++ F C
Sbjct: 469 YVTAFKSEDLQTLQRILAQTPEPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCT 528
Query: 629 LDGS-YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSK 687
+D S YF+C + K +A M++ V L L R+ FC AP+N + P L+ A YS+
Sbjct: 529 VDDSLYFMCNIEDFKFLAEMIQHVP-LPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 587
Query: 688 NAPVSIAM-----GMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAM 742
N P++ G P K +L+ LE+ V+ +Y ++ ++FP A
Sbjct: 588 NEPITFEFIKSNCGWPFKLPKTILDLVHLESVFDVMDLYRFM------DLFPEAGNVREA 641
Query: 743 ATDIAELLGQ---SLTNANWKPESRQAGK-PKLHQQREDGYDRPR 783
++ E++ Q +T E+ Q G+ P +R PR
Sbjct: 642 QKELDEIIQQGVFQITRLLKNTEASQEGETPNYSMRRVTHVKEPR 686
>sp|Q17828|SUV3_CAEEL ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Caenorhabditis elegans GN=C08F8.2 PE=3 SV=2
Length = 721
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/493 (40%), Positives = 304/493 (61%), Gaps = 21/493 (4%)
Query: 249 KFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSG 306
+ L+P F++ + FP + + R + +DLT+PH W+P AR + RKI +H GPTNSG
Sbjct: 145 EMLYPFFLDHAKQVFPHLEAMDDLRII---SDLTRPHNWYPEARSVTRKIFFHAGPTNSG 201
Query: 307 KTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHI 362
KTY+AL+RF EAK ++C PL+LLA EVF + N LG+ C L+TG+E++ S H+
Sbjct: 202 KTYHALKRFGEAKSAVFCGPLKLLAAEVFHRTNELGIPCDLVTGEERRFAKDNHHPSQHL 261
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEM+ST +VAVIDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +D+V+K+
Sbjct: 262 SSTVEMLSTQMRVEVAVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKL 321
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
G+ + ++YER PL + K + N+ GDC+V FS+R IF +E++
Sbjct: 322 LEPIGETVEVRYYERKSPLAIADKA-IESYSNIEPGDCIVCFSKRSIFFNSKKLEEN-GI 379
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
VIYG LPP T+ QA FND D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +
Sbjct: 380 KPAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--E 437
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
++P + QIAGRAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++
Sbjct: 438 LLPTYAAL--QIAGRAGRFGTAYANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYD 495
Query: 603 QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
Q+E F+ L +F +LL+ F C + +F+C ++++A +++++ L L+ R+ F
Sbjct: 496 QIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQIP-LPLKVRYTF 554
Query: 663 CFAPVNIRDPKAMYHLLRFASSYSKNAPVSI-----AMGMPKGSAKNDAELLDLETKHQV 717
C +P+N D + ++ A +S ++ + P A EL LE +++
Sbjct: 555 CTSPLNTEDKRTSAVFVKMARRFSTGQALTYEWLIDMLEWPPKPATTLNELSLLEQNYEI 614
Query: 718 LSMYLWLSHQFKE 730
L Y+WLS +F +
Sbjct: 615 LDQYMWLSMRFPD 627
>sp|Q61SU7|SUV3_CAEBR ATP-dependent RNA helicase SUV3 homolog, mitochondrial
OS=Caenorhabditis briggsae GN=CBG06022 PE=3 SV=3
Length = 721
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/493 (40%), Positives = 306/493 (62%), Gaps = 21/493 (4%)
Query: 249 KFLFPIFVEFCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSG 306
+ L+P F++ + FP + + R + +DLT+PH W+P AR + RKI +H GPTNSG
Sbjct: 143 EMLYPFFLDHSKQVFPHLEAMDDLRII---SDLTRPHNWYPEARSIIRKIFFHAGPTNSG 199
Query: 307 KTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP----FSNHI 362
KTY+AL+RF EAK ++C PL+LLA EVF++ NALG+ C L+TG+E++ S H+
Sbjct: 200 KTYHALKRFGEAKSAVFCGPLKLLATEVFNRTNALGIPCDLVTGEERRFAKDNHHPSQHL 259
Query: 363 ACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422
+ TVEM+ST +V VIDEIQM+ D RG+AWTRALLG ADEIHLCG+P+ +++V+K+
Sbjct: 260 SSTVEMLSTQMRVEVVVIDEIQMLRDEQRGWAWTRALLGAAADEIHLCGEPAAINIVKKL 319
Query: 423 CSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNH 482
G+ + ++Y+R PL + A + N+ GDC+V FS+R +F +E++
Sbjct: 320 LEPIGETVEVRYYDRKSPLTI-ADRAIESYSNIEPGDCIVCFSKRAVFFNSKKLEEN-GI 377
Query: 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDK 542
VIYG LPP T+ QA FND D+E +VLVA+DA+GMGLNLNIRRV+F S ++ +
Sbjct: 378 KPAVIYGDLPPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRRVIFNSCTRQT--E 435
Query: 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFE 602
++P + QIAGRAGR G+ Y +G+ TT+ +DL L L + E + VG+ P ++
Sbjct: 436 LLPTYAAL--QIAGRAGRFGTAYANGVATTMRKEDLGTLKTILAEKVEPITNVGIAPTYD 493
Query: 603 QVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNF 662
Q+E F+ L +F +LL+ F C + +F+C ++++A ++++V L L+ R+ F
Sbjct: 494 QIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVP-LPLKVRYTF 552
Query: 663 CFAPVNIRDPKAMYHLLRFASSYSKNAPVSIAMGM-----PKGSAKNDAELLDLETKHQV 717
C +P+N D + ++ A ++ ++ M P A +EL LE ++V
Sbjct: 553 CTSPLNTDDKRTAAVFVKMARRFATGQALTYEWLMDMLEWPPKPASTLSELSLLEQNYEV 612
Query: 718 LSMYLWLSHQFKE 730
L Y+WLS +F +
Sbjct: 613 LDQYMWLSMRFPD 625
>sp|O94445|SUV3_SCHPO ATP-dependent RNA helicase suv3, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suv3 PE=3 SV=1
Length = 647
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/470 (39%), Positives = 270/470 (57%), Gaps = 24/470 (5%)
Query: 277 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336
DL P W+P AR ++R II H GPTNSGKT+ AL+R KKGI+ PLRLLA E+++
Sbjct: 155 TDLKNPIEWYPGARKLRRHIIMHVGPTNSGKTHRALERLKTCKKGIFAGPLRLLAHEIYN 214
Query: 337 KVNALGVYCSLLTGQE-KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAW 395
++ A G+ C+L TG+E + PF ++CTVEM + +DVAVIDEIQMM+D RGYAW
Sbjct: 215 RLQANGIACNLYTGEEIRNDYPFPQVVSCTVEMCNLSTTFDVAVIDEIQMMADPSRGYAW 274
Query: 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
T+ LLGL A EIHLCG+ SV+ +VR I T D+ YER PL V K+L G L +
Sbjct: 275 TQCLLGLQAKEIHLCGEESVVKLVRSIAKMTQDDFTVYRYERLNPLHVAEKSLNGKLSEL 334
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515
+ GDCVVAFSR+ IF +K I++ VIYG+LPPE R QQA+LFN + ++ ++L+A
Sbjct: 335 KDGDCVVAFSRKNIFTLKSKIDQALGKKSAVIYGSLPPEVRNQQASLFNSKSSDENILLA 394
Query: 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR---GSIYPDGLTTT 572
SDA+GMGLNL ++R+VF L K++G I +P Q+KQIAGRAGR GS G+ TT
Sbjct: 395 SDAIGMGLNLGVKRIVFSDLKKFSGVSTIDIPVPQIKQIAGRAGRHNPNGSKQSAGIVTT 454
Query: 573 LNLDDLDYLIECLKQP----FEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628
L D L + P F FF + LF+ + + +++ + +
Sbjct: 455 LYQKDFAKLNRAMNLPTKNLFNACIGAKDDLFFRYLSLFSDDIPQKL---IFDRYFKLAK 511
Query: 629 LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFC---------FAPVNIRDPKAMYHLL 679
+ + + L+ ++GL+++D+ +AP+ IR+ +
Sbjct: 512 TTTPFVVSEGALSTFIIEYLDHIKGLTIKDKIKLLGCPVLKHSKYAPLFIREIGCVIAQG 571
Query: 680 RFASSYS-KNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQF 728
+ Y K+ P+ I + +G + EL LE H+++ Y+W S ++
Sbjct: 572 KRLQIYDLKSVPLEI---LERGIPTTETELQQLEQLHKLIVAYMWASIRY 618
>sp|P32580|SUV3_YEAST ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUV3 PE=1
SV=2
Length = 737
Score = 309 bits (792), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 189/475 (39%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WFP AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE--KKLVPFSNH---IACTVEMVSTDEMYDVAVIDEIQMMSDAC 390
D+ +A + C+LLTG+E + L N + TVEMV ++ +DV V+DEIQMMSD
Sbjct: 274 DRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGD 333
Query: 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLG 450
RG+AWT ALLG+++ E+HLCG+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 334 RGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKD 393
Query: 451 DLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510
++ +R GDCVVAFS+++I ++K+ IEK TN VIYG+LPPETR QQA LFN + E+
Sbjct: 394 GIKGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGEY 451
Query: 511 DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR------RGSI 564
D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR G +
Sbjct: 452 DIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGV 511
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ-LLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 512 -PQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTI 570
Query: 624 GENCR--LDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELEKSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>sp|O74727|SUV3_SACDO ATP-dependent RNA helicase SUV3, mitochondrial OS=Saccharomyces
douglasii GN=SUV3 PE=3 SV=1
Length = 737
Score = 306 bits (784), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 273/475 (57%), Gaps = 27/475 (5%)
Query: 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVF 335
+ D+T P WF AR ++R II H GPTNSGKTY ALQ+ +G Y PLRLLA EV+
Sbjct: 214 NVDITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVY 273
Query: 336 DKVNALGVYCSLLTGQE------KKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389
D+ + V C+LLTG+E K P + + TVEMV ++ +DV V+DEIQMMSDA
Sbjct: 274 DRFQSEKVRCNLLTGEEVIRDLDDKGNP-AGLTSGTVEMVPINQKFDVVVLDEIQMMSDA 332
Query: 390 CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLL 449
RG+AWT ALLG+++ E+HL G+ SVL +V+ I TGD+L YER L VE K +
Sbjct: 333 DRGWAWTNALLGVVSKEVHLVGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEDKPVK 392
Query: 450 GDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE 509
++ +R GDCVVAFS++++ ++K+ IEK TN VIYG+LPPETR QQA LFN + E
Sbjct: 393 DGIKGLRKGDCVVAFSKKKVLDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFN--NGE 450
Query: 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI----- 564
+D++VASDA+GMGLNL+I RVVF + KYNG++++ + SQ+KQI GRAGR S
Sbjct: 451 YDIMVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSKSTSGG 510
Query: 565 YPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT-FCQLLEKF 623
P G T+ L + + ++ P E +K +P E Q T LL+
Sbjct: 511 VPQGFITSFESKVLKSVRKAIESPIEYLKTAVTWPTDEICAQLMTQFPPGTPTSDLLQTI 570
Query: 624 GENCRL--DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-PKAMYHLLR 680
+ D + L KV + E ++ + D+ APV +D P +
Sbjct: 571 SDELERSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPV--KDMPMVTKAFTK 628
Query: 681 FASSYSKNAPVS-IAMGMP-----KGSAKNDAELLDL-ETKHQVLSMYLWLSHQF 728
F + +K ++ +P N++ L++ E+ + ++++Y WLS+++
Sbjct: 629 FCETIAKRHTRGLLSYRLPFNLLDYNCIPNESYSLEVYESLYNIITLYFWLSNRY 683
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 146/381 (38%), Gaps = 88/381 (23%)
Query: 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA----LQRFME 317
+ PDEIKRF +L P +++ K + PT SGKT A L+ +
Sbjct: 7 DLPDEIKRFYENSGILELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLN 66
Query: 318 AKKGIYCSPLRLLAMEVF---DKVNALGVYCSLLTG---QEKKLVPFSNHIACTVEMV-- 369
K +Y PLR LA E F + + LG+ + TG + + + ++ I T E
Sbjct: 67 GGKALYIVPLRALASEKFRRFQEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKTDS 126
Query: 370 ----STDEMYDVAVI--DEIQMMSDACRG------------------------------- 392
T M +++V+ DE+ ++ RG
Sbjct: 127 LLRNETAWMQEISVVVADEVHLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADE 186
Query: 393 -YAWTRALL------------GLMADEIHLC-------GDPS-------VLDVVRKICSE 425
AW A L G+ + I C G P+ VLD +++
Sbjct: 187 LAAWLDAELVLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQPTKDEAVNLVLDTIKEGGQC 246
Query: 426 TGDELHEQHYERFKPLVVEA--KTLLGDLRNVRSG--DCVVAFSRREIFEV-KMAIEKHT 480
E ++ F V A KTL + R +G D ++ S ++ V + T
Sbjct: 247 LVFESSRKNCMGFAKKAVSAVKKTLSNEDRETLAGIADEIIENSETDVSSVLATCVRSGT 306
Query: 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNG 540
H + L R N F ++ ++ ++ + GLNL RRV+ S +Y+
Sbjct: 307 AFH----HAGLTTPLRELVENGF--REGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSS 360
Query: 541 DK-IIPVPGSQVKQIAGRAGR 560
D + P+P + KQ+AGRAGR
Sbjct: 361 DSGMQPIPVLEYKQMAGRAGR 381
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus filamentous virus
(isolate Iceland/Hveragerdi) GN=SIFV0007 PE=4 SV=1
Length = 601
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 133/324 (41%), Gaps = 66/324 (20%)
Query: 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAK-KGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349
+M K + PT +GK++ A+ ME K + +Y PLR LA+++ D + L+
Sbjct: 20 LMSDKNLLITAPTGTGKSFLAMLMAMETKSRVVYTVPLRALALQLNDDFH--NKVAPLVN 77
Query: 350 GQEKKLVPFSNHIACTVEMVSTD-EMYDVAVIDEIQMMSDAC--RGYAWTRALLGLMADE 406
G +++ +A T E+ D E + VI +DA R Y WT + L+ DE
Sbjct: 78 G-------YADSVALTSEVYEEDPENLEERVIFTTYEKADAIFRRHYPWTDRIETLIIDE 130
Query: 407 IHLCGDPSVLDVVRKICSETGDE---------------------------LHEQHYERFK 439
IH GD + + + +E E+ +K
Sbjct: 131 IHNIGDKERGKAIENLIAYAMNEGIRIVAMSATIPDVNKIAEIIDAEIIKTDERPIPLYK 190
Query: 440 PLVVEAKTLL--GDL---------RNVRSGDCVVAF--SRREIFEVKMAIEKHTNHHCCV 486
+ + K GD+ + VR V+ F +R++ E+ M ++ +
Sbjct: 191 AVKIGNKLYFEDGDVIELKEDFIKKMVRKNKVVMIFTSTRKKAEELYMIYDRKFQNKVAF 250
Query: 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSL-------SKYN 539
+ L ET+ + L + +++++V++ A+ G+N VVF L ++
Sbjct: 251 FHAGLDAETKLRL--LEETRQGKYNIIVSTTALSQGVNFPFYAVVFDDLKLPIIEYGRFT 308
Query: 540 GDK-IIPVPGSQVKQIAGRAGRRG 562
G K I P+ + QI GRAGR G
Sbjct: 309 GWKQITPI---EFDQICGRAGRPG 329
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 133/356 (37%), Gaps = 93/356 (26%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKT---YNAL-QRFMEAKKGIYCSPLRLLAMEVFD-- 336
H ++ K + + PT +GKT Y+A+ + F K IY PLR LAME F
Sbjct: 26 HQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAMEKFSEL 85
Query: 337 -KVNALGVYCSLLTGQ---EKKLVPFSNHIACTVEMVSTDEMYD--------VAVIDEIQ 384
++ LG+ + G + + + T E + +D + V+DEI
Sbjct: 86 SRLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLLVLDEIH 145
Query: 385 MMSDACRG--------------------------------YAWTRALL------------ 400
+ D RG +W A L
Sbjct: 146 TIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWLDASLIKSDFRPVPLKT 205
Query: 401 GLM-ADEIHLCGD----PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNV 455
G++ D+++L G S+ ++R+ + G L F +A+ DL +
Sbjct: 206 GILYRDQLYLDGKRRSGVSINQIIRETVEDNGQVLM------FVSSRKKAEDTARDLAQI 259
Query: 456 RSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ----DNEF- 510
D + S E TN + ++ LP A L NDQ + EF
Sbjct: 260 FGSDANIKISSDE-----------TNVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFR 308
Query: 511 ----DVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
V+VA+ + G+NL R V+ ++++ D I + ++KQ+ GRAGR G
Sbjct: 309 ARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPG 364
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 140/344 (40%), Gaps = 69/344 (20%)
Query: 283 HTWFPFARVMKRKIIYHCGPTNSGKT---YNAL-QRFMEAKKGIYCSPLRLLAMEVFD-- 336
H + K K I PT +GKT Y+A+ + F + K IY PLR LAME ++
Sbjct: 26 HQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAMEKYEEL 85
Query: 337 -KVNALGVYCSLLTGQEKKLVPFSNH---IACTVEMVSTDEMYD--------VAVIDEIQ 384
++ LG+ L G F + T E + +D + VIDEI
Sbjct: 86 SRLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMMEEVGLMVIDEIH 145
Query: 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI--CSETGDELHEQHYE-RFKPL 441
M+ D RG L ++ ++ + ++ + + SE + L+ + F+P+
Sbjct: 146 MIGDEYRG----PTLETVITTARYVNPETRIIALSATVSNASEIAEWLNASLIKSSFRPV 201
Query: 442 VVEAKTLL-------GDLRN-----------VRSGDCVVAF--SRRE------------- 468
++ L GD R+ V G V+ F SR+
Sbjct: 202 PLKVGILYRNRLFLDGDARSDVDINLLVKETVDDGGQVLIFVSSRKRAEDMAKNLSQLFD 261
Query: 469 -IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN---------EFDVLVASDA 518
I ++K++ E N + ++ LP A L N+Q + + V+VA+
Sbjct: 262 PINDLKVSSED-ANVYDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPT 320
Query: 519 VGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
+ G+NL R V+ +++Y I + +VKQ+ GRAGR G
Sbjct: 321 LAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPG 364
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
VL A++ MGLNL R V+F S+ K++G+ + + + Q+AGRAGRRG
Sbjct: 718 VLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 768
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYN-GDKIIPVPGSQVKQIAGRAGRRG-SIYPDGL 569
VL ++ + G+NL RRV+ +Y G I +P + KQ+AGRAGR G Y + +
Sbjct: 336 VLASTTTLAAGVNLPARRVIVNEYRRYEPGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAI 395
Query: 570 TTTLNLDDLDYLIE-CLKQPFEVVKKVGLFPFFEQVELFAGQLSNY--TFCQLLEKFGEN 626
+ D++DY+I+ +K P E VK + P + + S Y T +L+ KF N
Sbjct: 396 IIVSSKDEVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTLSAVASQYAETIDELV-KFTSN 454
Query: 627 C 627
Sbjct: 455 T 455
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
Q+ VL A++ +GLN+ + VVF S+ K++G + V G + Q++GRAGRRG
Sbjct: 492 QEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 548
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3
SV=1
Length = 1026
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
VL A++ MGLN+ R VVF S K++G + + Q+AGRAGRRG
Sbjct: 465 VLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRG 515
Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 280 TKPHTWFPFARVMKRKIIYHC----------GPTNSGKT----YNALQRFMEAKKGIYCS 325
T+P ++PF +K C T++GKT Y + E ++ IY S
Sbjct: 116 TEPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTS 175
Query: 326 PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV------STDEMYDVA- 378
P++ L+ + + ++ L+TG + L P ++ + T E++ ++ M +V
Sbjct: 176 PIKALSNQKYRELEEEFKDVGLMTG-DVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGW 234
Query: 379 -VIDEIQMMSDACRGYAWTRALLGLMADEI 407
V DEI M D RG W ++ LM+ I
Sbjct: 235 VVYDEIHYMRDKERGVVWEETII-LMSKNI 263
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
Q+ VL A++ +GLN+ + VVF ++ K++G + G + Q++GRAGRRG
Sbjct: 540 QEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRG 596
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 280 TKPHTWFPF-----ARVMKRKIIYHCGPTNSGKT----YNALQRFMEAKKGIYCSPLRLL 330
T P T PF A + +++ + T++GKT Y Q + ++ IY SP++ L
Sbjct: 194 TYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKAL 253
Query: 331 AMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV------STDEMYDVA--VIDE 382
+ + + ++ A L+TG + + P + + T E++ ++ M +VA + DE
Sbjct: 254 SNQKYRELLAEFGDVGLMTG-DVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDE 312
Query: 383 IQMMSDACRGYAWTRALLGLMADEIHLC 410
I M D RG W ++ L+ D+ H
Sbjct: 313 IHYMRDKERGVVWEETII-LLPDKSHFV 339
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
A++ + +G+N+ R VV L K+NG++ +P+ + Q+ GRAGRRG
Sbjct: 369 ATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRG 416
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
A++ + +G+N+ R VV L K+NG + +P+ + Q+ GRAGRRG
Sbjct: 372 ATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRG 419
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 131/337 (38%), Gaps = 87/337 (25%)
Query: 302 PTNSGKTY---NALQRFM-EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357
PT SGKT A+ R + K +Y PL+ LA E +++ GV L TG +
Sbjct: 47 PTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNKGVKVGLSTGDLDR--- 103
Query: 358 FSNHIACTVEMVSTDEMYD--------------VAVIDEIQMMSDACRG------YAWTR 397
+ + +V+T E D + VIDEI ++ RG A R
Sbjct: 104 RDDALGKNDIIVATSEKVDSLLRNGARWIPDITLVVIDEIHLIDSPDRGPTLEMVIAKMR 163
Query: 398 A------LLGLMADEIHLCGDPSVL----DVVRKICSETGDELHE--------QHYERFK 439
+ L+GL A G+P VL D S +L + Q ER +
Sbjct: 164 SKNPGMQLIGLSAT----IGNPKVLAGWLDAELVTSSWRPVDLRQGVFYDNRIQFAERMR 219
Query: 440 PLVVEAKTLLGDLRNV------RSGDCVV---------AFSRREIFEVK----------- 473
P+ +K D N+ G C+V AF++R +K
Sbjct: 220 PVKQVSKNY--DDLNLCLDTIAEGGQCLVFVSSRRNAEAFAKRAAGAIKSEDAALAACAE 277
Query: 474 -----MAIEKHTNHHCCVIYGAL--PPETRRQQANLFND--QDNEFDVLVASDAVGMGLN 524
E CV GA R++ ++ + + N + ++ + GLN
Sbjct: 278 RLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTLAAGLN 337
Query: 525 LNIRRVVFYSLSKYN-GDKIIPVPGSQVKQIAGRAGR 560
L RRV+ +++ G+ + P+P S+ +Q+AGRAGR
Sbjct: 338 LPARRVIIRDYLRFSAGEGMQPIPVSEYRQMAGRAGR 374
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTT 571
VL A++ MG+N+ R VVF S+ K++G + + Q+AGRAGRRG + P G
Sbjct: 658 VLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRG-LDPTGTVI 716
Query: 572 TL 573
L
Sbjct: 717 LL 718
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-KIIPV 546
+ L E RR + F + N V+ + + GLNL RRV+ +++ + +P+
Sbjct: 315 HAGLKGEHRRIVEDGF--RQNILKVIACTPTLAAGLNLPARRVIIRDYKRFDVNYGSVPI 372
Query: 547 PGSQVKQIAGRAGR-RGSIYPDGLTTTLNLDDLDYLIECL--KQPFEVVKKVGLFP 599
P + KQ+AGRAGR R Y + + N D+ L+E P + K+G P
Sbjct: 373 PVLEYKQMAGRAGRPRLDPYGEAVLIAKNYDEFGELMENYINADPEHITSKLGTEP 428
Score = 39.7 bits (91), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 31/167 (18%)
Query: 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA----LQRFMEA 318
P +K F +L P ++ K + PT SGKT A L+ E
Sbjct: 8 LPQALKDFYTGSGIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEG 67
Query: 319 KKGIYCSPLRLLAMEVFDK--------VNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370
K IY PL+ LA E +D+ + GV + TG + S
Sbjct: 68 GKAIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIATG----------------DFDS 111
Query: 371 TDEMY---DVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414
DE D+ V + S G +W L ++ADE+HL P+
Sbjct: 112 RDEYLGEKDIIVATSEKTDSLLRNGASWLSGLSVVVADEVHLIDSPN 158
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562
V+ A++ + G+N+ R V SLSK G++ I + +++ Q+AGRAGRRG
Sbjct: 524 VVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGRAGRRG 574
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus
GN=Skiv2l2 PE=2 SV=1
Length = 1040
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+G L P + LF++ L A++ MG+N+ R V+F + KY+G +
Sbjct: 454 HGGLLPILKETIEILFSE--GLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWIS 511
Query: 548 GSQVKQIAGRAGRRG 562
+ Q++GRAGRRG
Sbjct: 512 SGEYIQMSGRAGRRG 526
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDK-IIPVPGSQVKQIAGRAGR-RGSIYPDGL 569
++ ++ + GLNL RRV+ S +Y+ D + P+P + KQ+AGRAGR R Y + +
Sbjct: 332 LISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEAV 391
Query: 570 TTTLNLDDLDYLIE 583
+ ++L +L E
Sbjct: 392 LLAKSYEELLFLFE 405
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD 541
HH LPP R+ F + V+ ++ + G+NL RRVV S +Y
Sbjct: 311 HHA-----GLPPSLRKTVEEAF--RAGAVKVVYSTPTLAAGVNLPARRVVIDSYYRYEAG 363
Query: 542 KIIPVPGSQVKQIAGRAGRRG 562
P+ ++ KQ+AGRAGR G
Sbjct: 364 FREPIRVAEYKQMAGRAGRPG 384
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 20/159 (12%)
Query: 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA----LQRFME 317
+ PDE+K+F +L P +++ + + PT SGKT A L+ +
Sbjct: 7 DLPDEVKQFYLNSGIMELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSILA 66
Query: 318 AKKGIYCSPLRLLAMEVFDKV---NALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM 374
K +Y PLR LA E F + + LG+ + TG + +V+T E
Sbjct: 67 GGKALYIVPLRALASEKFRRFREFSELGIRVGISTGDYDLR---DEGLGVNDIIVATSEK 123
Query: 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413
D + +E W + + ++ADE+HL P
Sbjct: 124 TDSLLRNET----------VWMQEISVVVADEVHLIDSP 152
Score = 40.4 bits (93), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNG-DKIIPVPGSQVKQIAGRAGR 560
++ ++ + GLNL RRV+ + +Y+ D + P+P + KQ+AGRAGR
Sbjct: 332 LISSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYKQMAGRAGR 381
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY 565
Q+ +L A++ +GLN+ R V+F K++G+ + + Q++GRAGRRG I
Sbjct: 456 QEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRG-ID 514
Query: 566 PDGLTTTL 573
GL+ +
Sbjct: 515 TKGLSIVI 522
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens
GN=SKIV2L2 PE=1 SV=3
Length = 1042
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547
+G L P + LF++ L A++ MG+N+ R V+F + K++G +
Sbjct: 456 HGGLLPILKETIEILFSE--GLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWIS 513
Query: 548 GSQVKQIAGRAGRRG 562
+ Q++GRAGRRG
Sbjct: 514 SGEYIQMSGRAGRRG 528
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKII 544
V +G L P + LF Q VL A++ MG+N+ + VVF K++G
Sbjct: 617 AVHHGGLLPIIKEIVEILF--QRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFR 674
Query: 545 PVPGSQVKQIAGRAGRRG 562
+ + Q +GRAGRRG
Sbjct: 675 DLLPGEYTQCSGRAGRRG 692
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 27/121 (22%)
Query: 302 PTNSGKTYNA----LQRFM-EAKKGIYCSPLRLLAMEVFDKVN---ALGVYCSLLTGQEK 353
PT SGKT A + R + E K +Y PL+ LA E F + LG+ ++ TG
Sbjct: 47 PTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEFKDWEELGLKVAMATG--- 103
Query: 354 KLVPFSNHIACTVEMVSTDEM---YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
+ S DE YD+ + + S G +W R + L+ DEIHL
Sbjct: 104 -------------DYDSKDEWLGGYDIIIATAEKFDSLLRHGSSWIRNVKVLVVDEIHLI 150
Query: 411 G 411
G
Sbjct: 151 G 151
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 488 YGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-KIIPV 546
+ L R+ N F + N V+ ++ + GLNL RRV+ S +++ + + P+
Sbjct: 310 HAGLNSNHRKLVENGF--RQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQPI 367
Query: 547 PGSQVKQIAGRAGR 560
P + KQ+AGRAGR
Sbjct: 368 PVLEYKQMAGRAGR 381
>sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DBP10 PE=3 SV=1
Length = 802
Score = 40.0 bits (92), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 57/224 (25%)
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR-RVVFYSLS 536
+ T + +IY +L R+QQ F + ++ DVLV +D GL++ I V+ Y
Sbjct: 326 RTTGYRTSLIYSSLDQVARQQQLAGF--RSHQSDVLVVTDVAARGLDIPIMDHVINYDFP 383
Query: 537 KYNGDKIIPVPGSQVKQIA--GRAGRRGSIYPDGLTTTLNLDDLDYL--------IECLK 586
G +I V ++ RAGR+G+ Y + + +D YL E +
Sbjct: 384 --AGPRIF------VHRVGRTARAGRKGTAY-----SLIVKEDFPYLCDLHTFLGTERMG 430
Query: 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVAN 646
+P +V++ + + E VE Y F L E HI + N
Sbjct: 431 EPADVLRSLPIEQLSENVE--------YVFHNLDETA---------------PHITALRN 467
Query: 647 MLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP 690
++ K QG+ +R P + R K++ AS+ S N P
Sbjct: 468 VMRKGQGMF--ERSRTKANPTSYRQAKSL------ASALSNNPP 503
>sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DBP10 PE=3
SV=1
Length = 802
Score = 40.0 bits (92), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 91/224 (40%), Gaps = 57/224 (25%)
Query: 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR-RVVFYSLS 536
+ T + +IY +L R+QQ F + ++ DVLV +D GL++ I V+ Y
Sbjct: 326 RTTGYRTSLIYSSLDQVARQQQLAGF--RSHQSDVLVVTDVAARGLDIPIMDHVINYDFP 383
Query: 537 KYNGDKIIPVPGSQVKQIA--GRAGRRGSIYPDGLTTTLNLDDLDYL--------IECLK 586
G +I V ++ RAGR+G+ Y + + +D YL E +
Sbjct: 384 --AGPRIF------VHRVGRTARAGRKGTAY-----SLIVKEDFPYLCDLHTFLGTERMG 430
Query: 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVAN 646
+P +V++ + + E VE Y F L E HI + N
Sbjct: 431 EPADVLRSLPIEQLSENVE--------YVFHNLDETA---------------PHITALRN 467
Query: 647 MLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAP 690
++ K QG+ +R P + R K++ AS+ S N P
Sbjct: 468 VMRKGQGMF--ERSRTKANPTSYRQAKSL------ASALSNNPP 503
>sp|Q03VG8|MUTS2_LEUMM MutS2 protein OS=Leuconostoc mesenteroides subsp. mesenteroides
(strain ATCC 8293 / NCDO 523) GN=mutS2 PE=3 SV=1
Length = 800
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 295 KIIYHCGPTNSGKTYN----ALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLT 349
K I GP GKT L + M A+ G++ + + + +FD+V A +G S+
Sbjct: 330 KTIIITGPNTGGKTITIKTLGLLQLM-AQSGLFITTRQPSTIGIFDEVFADIGDEQSI-- 386
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
E+ L FS+H+A V M+ + + + DE+ +D G A A+L +A
Sbjct: 387 --EQNLSTFSSHMANIVSMLDHIDDKTLVIFDELGAGTDPAEGAALAIAILDKVA 439
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 302 PTNSGKTYNA----LQRFM-EAKKGIYCSPLRLLAMEVFDKVN---ALGVYCSLLTGQEK 353
PT SGKT A + R + + K +Y PL+ LA E F + +G+ ++ TG
Sbjct: 47 PTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATG--- 103
Query: 354 KLVPFSNHIACTVEMVSTDEM---YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410
+ S DE YD+ + + S G +W + + L+ADEIHL
Sbjct: 104 -------------DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150
Query: 411 G 411
G
Sbjct: 151 G 151
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 33/167 (19%)
Query: 260 IEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTY-------N 310
++E P + IKR +L P + V++ K + PT SGKT N
Sbjct: 3 VDELPIDERIKRVIKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVN 62
Query: 311 ALQRFMEAKKGIYCSPLRLLAMEV---FDKVNALGVYCSLLTGQEKKLVPFSNHIACTVE 367
L E K +Y PL+ LA E F + LG+ + TG +
Sbjct: 63 KL--LSEGGKAVYLVPLKALAEEKYREFKEWEVLGLRVAATTG----------------D 104
Query: 368 MVSTDEM---YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCG 411
STDE YD+ V + S G +W + + ++ADE+HL G
Sbjct: 105 YDSTDEWLGRYDIIVATAEKFDSLLRHGASWIKDVKLVVADEVHLIG 151
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 30/166 (18%)
Query: 257 EFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNAL---- 312
E + E EI R R + E L P + V++ + + PT SGKT A
Sbjct: 5 ELNVSEKIKEILRERGIEE---LYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIA 61
Query: 313 -QRFMEAKKGIYCSPLRLLAMEVFDKVN---ALGVYCSLLTGQEKKLVPFSNHIACTVEM 368
+ E K +Y PL+ LA E F + LG+ ++ TG +
Sbjct: 62 NKLLEEGGKAVYIVPLKALAEEKFREFKDWERLGLKVAMATG----------------DY 105
Query: 369 VSTDEM---YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCG 411
S DE YD+ + + S G +W R + L+ DEIHL G
Sbjct: 106 DSKDEWLGKYDIIIATAEKFDSLLRHGSSWIRDVKMLVIDEIHLIG 151
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 522 GLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG-SIYPDGLTTTLNLDDLDY 580
GLNL RR + L+++ + +P +++Q GRAGR G Y +G+ N D DY
Sbjct: 841 GLNLPCRRAIVKDLTRFTNKGMRYIPIMEIQQCIGRAGRPGLDPYGEGIIVAKN--DRDY 898
Query: 581 L 581
L
Sbjct: 899 L 899
>sp|B1MXB4|MUTS2_LEUCK MutS2 protein OS=Leuconostoc citreum (strain KM20) GN=mutS2 PE=3
SV=1
Length = 801
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 295 KIIYHCGPTNSGKTYN----ALQRFMEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLT 349
K I GP GKT + + M A+ G++ + R + VF ++ A +G S+
Sbjct: 330 KAIIITGPNTGGKTITIKTLGILQLM-AQSGLFITTKRPSTVGVFHEIFADIGDEQSI-- 386
Query: 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404
E+ L FS+H+A V M+ + + + DE+ +D G A A+L +A
Sbjct: 387 --EQSLSTFSSHMANIVSMIDRIDDKTLVIFDELGAGTDPAEGAALAIAILDKVA 439
>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 OS=Dictyostelium
discoideum GN=ddx47 PE=3 SV=1
Length = 546
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 9/64 (14%)
Query: 286 FPFARVMKRKIIYHCGPTNSGKT----YNALQRFMEAKKGIYC---SPLRLLAMEVFDKV 338
P+A +K + I T SGKT LQ+ +EA +G++C +P R LA ++ D+
Sbjct: 150 IPWA--LKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQF 207
Query: 339 NALG 342
NA+G
Sbjct: 208 NAIG 211
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 300 CGPTNSGKTYNALQRFME----------AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349
C PT SGKT + KKG++ PL+ LA E FD+
Sbjct: 38 CIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALASEKFDEF----------- 86
Query: 350 GQEKKLVPFSNHIACTVEMVSTDE---MYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406
+KK + + ++ T E Y++ + ++ S W + L + DE
Sbjct: 87 --QKKYETYGIKVGMSIGDYDTKEDLSKYNIIITTSEKLDSLMRHNIEWIKDLSLAVIDE 144
Query: 407 IHLCGD 412
IHL GD
Sbjct: 145 IHLIGD 150
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 512 VLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG-SIYPDGLT 570
V+ + + GLNL RR + + +Y+ + +I +P ++ Q GRAGR G Y +G+
Sbjct: 336 VICCTPTLSAGLNLPCRRAIIRDIRRYSQNGLIDIPKLEIHQCIGRAGRPGLDPYGEGII 395
Query: 571 TTLNLDDLDYLIECLKQPFE 590
N D++ L P E
Sbjct: 396 LAKNEKDVEKAFLALTGPLE 415
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 20/81 (24%)
Query: 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN-LNIRRVVFY----SLSKYNGDKI 543
+LP + RQ F+D N+ V+VA+ A GMG++ N+R+++ Y SL Y
Sbjct: 529 ASLPKKHLRQVHQDFHD--NKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYY---- 582
Query: 544 IPVPGSQVKQIAGRAGRRGSI 564
Q AGRAGR G +
Sbjct: 583 ---------QEAGRAGRDGEL 594
>sp|Q75AE1|ROK1_ASHGO ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ROK1
PE=3 SV=1
Length = 569
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 292 MKRKIIYHCGPTNSGKTYN----ALQRFMEAK------KGIYCSPLRLLAMEVFDKVNAL 341
++ + I C PT SGKT LQ+ + K KG+ SP + LA ++FD+ + L
Sbjct: 158 LQNRDIVACAPTGSGKTLAFLIPLLQQVISDKAVGTGVKGLIISPTKELANQIFDECSKL 217
Query: 342 GVYCSLLTGQEKKLVPFSNHIACTVE-MVSTDEMYDVAVIDEIQMM 386
L + + S +A ++ + +D+ YD+ + ++++
Sbjct: 218 AQRIFLEKKRPLSVALLSKSLAAKLKNQIVSDKKYDIIISTPLRLI 263
>sp|B3EI96|NUOD_CHLL2 NADH-quinone oxidoreductase subunit D OS=Chlorobium limicola
(strain DSM 245 / NBRC 103803) GN=nuoD PE=3 SV=1
Length = 395
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 26/223 (11%)
Query: 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGE- 625
DG T L YL C ++ EVV G+ P+ ++++ AG + + +C +EK +
Sbjct: 50 DGEVVTSAEPYLGYLHRCFEKHCEVVDYPGIVPYTDRMDYLAGMNNEWAYCIAVEKLLDI 109
Query: 626 NCRLDGSYFLCRHDHIKKVANMLEKVQGLSLE----DRFNFCFAPVNIRDPKAMYHLLRF 681
+ + ++A+ L + ++ F FCF RD + + +LL +
Sbjct: 110 EIPRRVEFIRVMVSELNRIASHLVAIGTYGIDLGAFTPFLFCF-----RDREHILNLLEW 164
Query: 682 ASS----YSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVF-PYA 736
AS Y+ +A +P K E +D + +V+ +Y L+ + E+F
Sbjct: 165 ASGARMLYNYIWIGGVAFDIPADFNKRVKEFVDY-FRPKVVELYKLLT---ENEIFVKRT 220
Query: 737 KKAEAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGY 779
K M D+A N W + + +R D Y
Sbjct: 221 KGIGIMPADVA-------INYAWSGPMLRGSGVQWDLRRNDPY 256
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 506 QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP----VPGSQVKQIAGRAGRR 561
+D V+VA+ + G+NL R VV + +YN K++ +P KQ++GRAGR
Sbjct: 330 RDRILKVIVATPTLAAGVNLPARAVVIGDIYRYN-RKVVGYMDLIPVMDYKQMSGRAGRP 388
Query: 562 G 562
G
Sbjct: 389 G 389
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,598,906
Number of Sequences: 539616
Number of extensions: 12833302
Number of successful extensions: 31567
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 31423
Number of HSP's gapped (non-prelim): 140
length of query: 809
length of database: 191,569,459
effective HSP length: 126
effective length of query: 683
effective length of database: 123,577,843
effective search space: 84403666769
effective search space used: 84403666769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)