Query 003587
Match_columns 809
No_of_seqs 819 out of 4300
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0953 Mitochondrial RNA heli 100.0 1.1E-96 2E-101 802.3 46.0 598 192-794 87-696 (700)
2 KOG0333 U5 snRNP-like RNA heli 100.0 2.9E-51 6.3E-56 444.5 20.9 362 151-580 189-627 (673)
3 PLN03137 ATP-dependent DNA hel 100.0 2.5E-50 5.5E-55 480.7 30.9 419 258-727 437-928 (1195)
4 COG0514 RecQ Superfamily II DN 100.0 2.7E-50 6E-55 458.0 25.4 391 285-728 23-460 (590)
5 PRK11057 ATP-dependent DNA hel 100.0 1.8E-47 4E-52 451.5 34.1 399 276-726 20-463 (607)
6 TIGR00614 recQ_fam ATP-depende 100.0 1.7E-47 3.7E-52 440.1 30.9 404 275-725 5-468 (470)
7 KOG0331 ATP-dependent RNA heli 100.0 2.8E-47 6E-52 426.3 25.1 299 270-583 102-454 (519)
8 TIGR01389 recQ ATP-dependent D 100.0 5E-46 1.1E-50 439.6 31.6 401 276-729 8-454 (591)
9 KOG0330 ATP-dependent RNA heli 100.0 1.1E-43 2.4E-48 374.8 19.2 291 270-580 72-410 (476)
10 PTZ00110 helicase; Provisional 100.0 1.6E-42 3.5E-47 404.4 26.9 308 257-583 131-490 (545)
11 COG0513 SrmB Superfamily II DN 100.0 1.8E-42 3.8E-47 400.8 24.6 294 269-577 39-380 (513)
12 KOG0336 ATP-dependent RNA heli 100.0 3.6E-42 7.9E-47 363.5 22.5 297 269-580 230-575 (629)
13 PLN00206 DEAD-box ATP-dependen 100.0 2.8E-41 6E-46 392.6 28.1 297 270-581 132-479 (518)
14 KOG0338 ATP-dependent RNA heli 100.0 3.4E-41 7.4E-46 364.8 21.2 302 269-587 191-543 (691)
15 PRK04837 ATP-dependent RNA hel 100.0 3.4E-40 7.3E-45 375.2 24.3 298 270-583 19-368 (423)
16 KOG0341 DEAD-box protein abstr 100.0 6.6E-41 1.4E-45 351.9 15.9 308 251-577 165-528 (610)
17 KOG0343 RNA Helicase [RNA proc 100.0 9.1E-40 2E-44 356.4 22.5 301 269-588 79-434 (758)
18 PRK11776 ATP-dependent RNA hel 100.0 2.6E-39 5.6E-44 371.9 27.4 297 270-582 15-354 (460)
19 KOG0345 ATP-dependent RNA heli 100.0 1.6E-39 3.5E-44 350.0 23.8 305 269-587 16-374 (567)
20 PRK10590 ATP-dependent RNA hel 100.0 2.3E-39 5.1E-44 371.5 26.6 297 270-583 12-358 (456)
21 KOG0335 ATP-dependent RNA heli 100.0 9.8E-40 2.1E-44 360.0 20.7 299 270-584 85-451 (482)
22 KOG0339 ATP-dependent RNA heli 100.0 1.9E-39 4.2E-44 350.6 20.8 296 270-580 234-578 (731)
23 PRK04537 ATP-dependent RNA hel 100.0 5.3E-39 1.1E-43 376.3 25.1 295 270-580 20-367 (572)
24 KOG0342 ATP-dependent RNA heli 100.0 2.4E-39 5.2E-44 351.2 19.3 303 271-587 94-447 (543)
25 PRK11634 ATP-dependent RNA hel 100.0 9.6E-39 2.1E-43 376.5 26.1 300 270-585 17-360 (629)
26 KOG0340 ATP-dependent RNA heli 100.0 7.7E-39 1.7E-43 334.7 21.7 302 271-587 19-371 (442)
27 PRK11192 ATP-dependent RNA hel 100.0 2E-38 4.4E-43 361.9 26.5 295 270-580 12-355 (434)
28 KOG0328 Predicted ATP-dependen 100.0 8.4E-39 1.8E-43 325.0 20.6 306 260-583 31-379 (400)
29 KOG0352 ATP-dependent DNA heli 100.0 1E-38 2.2E-43 339.1 19.6 341 279-638 20-432 (641)
30 KOG0351 ATP-dependent DNA heli 100.0 9.1E-39 2E-43 382.4 18.4 329 283-628 268-646 (941)
31 PRK01297 ATP-dependent RNA hel 100.0 1.5E-37 3.1E-42 358.6 25.9 297 270-582 98-447 (475)
32 KOG0348 ATP-dependent RNA heli 100.0 3.9E-37 8.5E-42 335.1 24.0 300 275-588 153-565 (708)
33 PTZ00424 helicase 45; Provisio 100.0 1.4E-36 3E-41 342.9 25.4 300 270-584 39-381 (401)
34 KOG0334 RNA helicase [RNA proc 100.0 1.3E-36 2.8E-41 355.4 24.0 320 208-581 353-724 (997)
35 KOG0326 ATP-dependent RNA heli 100.0 1E-36 2.2E-41 314.2 16.2 298 271-586 97-438 (459)
36 TIGR03817 DECH_helic helicase/ 100.0 1.8E-35 3.9E-40 355.1 27.9 291 270-576 25-385 (742)
37 KOG0353 ATP-dependent DNA heli 100.0 2E-36 4.2E-41 317.1 14.7 350 258-630 71-515 (695)
38 KOG0347 RNA helicase [RNA proc 100.0 2.4E-35 5.2E-40 322.1 16.4 290 270-578 192-571 (731)
39 KOG0344 ATP-dependent RNA heli 100.0 6.7E-34 1.5E-38 315.5 24.6 297 270-580 147-498 (593)
40 KOG0332 ATP-dependent RNA heli 100.0 9.6E-34 2.1E-38 298.0 24.3 297 270-576 101-442 (477)
41 KOG0346 RNA helicase [RNA proc 100.0 2.2E-34 4.7E-39 307.9 19.2 298 269-584 29-417 (569)
42 PRK02362 ski2-like helicase; P 100.0 4.3E-33 9.3E-38 336.9 30.3 318 271-592 13-415 (737)
43 PRK01172 ski2-like helicase; P 100.0 3.7E-32 8.1E-37 326.2 29.3 316 271-592 13-395 (674)
44 PRK00254 ski2-like helicase; P 100.0 1E-31 2.2E-36 324.1 30.8 352 270-627 12-442 (720)
45 PRK13767 ATP-dependent helicas 100.0 1.2E-31 2.7E-36 327.8 30.2 357 278-650 29-474 (876)
46 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2E-31 4.2E-36 320.5 27.3 305 292-604 15-361 (819)
47 PRK11664 ATP-dependent RNA hel 100.0 1.2E-30 2.6E-35 314.3 27.4 306 292-605 18-365 (812)
48 TIGR00580 mfd transcription-re 100.0 4.3E-30 9.3E-35 311.9 29.6 262 295-577 473-770 (926)
49 KOG4284 DEAD box protein [Tran 100.0 7.3E-31 1.6E-35 290.6 18.2 296 269-579 35-381 (980)
50 PRK10689 transcription-repair 100.0 1.2E-29 2.5E-34 314.1 29.9 261 295-576 622-918 (1147)
51 KOG0350 DEAD-box ATP-dependent 100.0 5.5E-31 1.2E-35 285.8 15.4 280 292-587 181-551 (620)
52 PHA02653 RNA helicase NPH-II; 100.0 3.4E-29 7.4E-34 294.9 28.0 279 290-578 175-515 (675)
53 COG1204 Superfamily II helicas 100.0 1E-29 2.2E-34 302.9 21.0 281 291-574 44-405 (766)
54 KOG0337 ATP-dependent RNA heli 100.0 4.5E-30 9.8E-35 273.9 14.2 296 270-583 32-375 (529)
55 TIGR00643 recG ATP-dependent D 100.0 5E-29 1.1E-33 296.1 24.8 281 271-574 226-563 (630)
56 KOG0327 Translation initiation 100.0 3.6E-29 7.8E-34 266.1 20.5 307 256-583 26-376 (397)
57 TIGR01587 cas3_core CRISPR-ass 100.0 4.5E-29 9.8E-34 277.8 22.1 267 296-576 1-335 (358)
58 PRK10917 ATP-dependent DNA hel 100.0 1.8E-28 3.9E-33 293.2 28.3 281 272-575 253-587 (681)
59 COG1201 Lhr Lhr-like helicases 100.0 9.7E-28 2.1E-32 282.8 29.7 360 272-650 14-438 (814)
60 PRK09751 putative ATP-dependen 100.0 2.8E-28 6E-33 303.4 25.3 330 299-650 1-461 (1490)
61 KOG0922 DEAH-box RNA helicase 100.0 9.9E-28 2.1E-32 270.3 22.0 301 291-606 63-417 (674)
62 PRK11131 ATP-dependent RNA hel 100.0 3.1E-27 6.7E-32 289.5 26.6 294 291-597 86-429 (1294)
63 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.9E-27 4.2E-32 281.7 22.6 268 277-563 12-379 (844)
64 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3E-27 6.5E-32 290.6 22.8 293 292-597 80-422 (1283)
65 COG1202 Superfamily II helicas 99.9 2.5E-27 5.5E-32 260.4 18.4 301 270-580 205-556 (830)
66 KOG0924 mRNA splicing factor A 99.9 1E-26 2.2E-31 259.0 19.1 295 291-601 368-720 (1042)
67 PRK14701 reverse gyrase; Provi 99.9 2.3E-26 4.9E-31 291.0 23.0 297 270-587 68-467 (1638)
68 PRK09401 reverse gyrase; Revie 99.9 6.8E-26 1.5E-30 281.3 21.8 268 276-559 76-429 (1176)
69 PHA02558 uvsW UvsW helicase; P 99.9 3.2E-25 6.9E-30 257.2 23.6 276 281-574 114-452 (501)
70 COG1643 HrpA HrpA-like helicas 99.9 2.1E-25 4.5E-30 265.1 22.4 307 292-607 63-415 (845)
71 KOG0923 mRNA splicing factor A 99.9 3.7E-25 8.1E-30 246.5 20.3 292 291-597 277-625 (902)
72 KOG0947 Cytoplasmic exosomal R 99.9 8.4E-25 1.8E-29 251.5 21.5 297 287-588 305-737 (1248)
73 KOG0926 DEAH-box RNA helicase 99.9 4.6E-25 1E-29 249.4 18.2 297 239-577 240-704 (1172)
74 COG1197 Mfd Transcription-repa 99.9 4.8E-24 1E-28 254.7 27.6 289 257-577 590-913 (1139)
75 KOG0948 Nuclear exosomal RNA h 99.9 1.3E-25 2.9E-30 252.6 11.5 305 282-591 132-555 (1041)
76 KOG0952 DNA/RNA helicase MER3/ 99.9 7.4E-24 1.6E-28 246.6 24.4 296 286-587 119-502 (1230)
77 PRK09200 preprotein translocas 99.9 1.5E-23 3.3E-28 248.6 24.1 120 447-583 416-547 (790)
78 COG4581 Superfamily II RNA hel 99.9 1.7E-24 3.7E-29 258.6 15.9 286 286-575 126-535 (1041)
79 TIGR03158 cas3_cyano CRISPR-as 99.9 1.7E-23 3.7E-28 232.8 21.8 250 289-559 7-357 (357)
80 COG1111 MPH1 ERCC4-like helica 99.9 6.2E-23 1.3E-27 225.5 24.3 113 456-584 364-491 (542)
81 PRK12898 secA preprotein trans 99.9 8.6E-23 1.9E-27 237.7 24.5 122 447-585 461-594 (656)
82 PRK13766 Hef nuclease; Provisi 99.9 3.6E-23 7.9E-28 252.6 20.1 104 457-576 365-478 (773)
83 TIGR00603 rad25 DNA repair hel 99.9 1.2E-22 2.5E-27 239.1 22.3 264 295-578 274-608 (732)
84 COG1205 Distinct helicase fami 99.9 1.1E-22 2.3E-27 246.1 21.3 288 271-575 60-420 (851)
85 TIGR03714 secA2 accessory Sec 99.9 3.6E-22 7.7E-27 235.0 23.8 118 447-582 412-542 (762)
86 TIGR01054 rgy reverse gyrase. 99.9 1.3E-22 2.9E-27 252.4 20.4 257 271-538 68-410 (1171)
87 TIGR00963 secA preprotein tran 99.9 2.8E-21 6.2E-26 226.1 24.5 111 456-583 403-523 (745)
88 KOG0951 RNA helicase BRR2, DEA 99.9 1.5E-21 3.3E-26 229.5 21.6 266 293-563 324-689 (1674)
89 PRK04914 ATP-dependent helicas 99.9 6.4E-21 1.4E-25 231.4 27.0 115 448-574 484-600 (956)
90 COG1200 RecG RecG-like helicas 99.9 1.4E-20 3.1E-25 214.9 23.7 260 297-578 286-592 (677)
91 KOG0329 ATP-dependent RNA heli 99.9 7.2E-22 1.6E-26 199.2 9.3 250 271-577 54-355 (387)
92 KOG0354 DEAD-box like helicase 99.9 4.4E-20 9.5E-25 213.7 24.5 101 460-576 416-528 (746)
93 TIGR00595 priA primosomal prot 99.9 2.1E-20 4.6E-25 216.1 20.5 283 298-585 1-390 (505)
94 KOG0920 ATP-dependent RNA heli 99.8 5.9E-20 1.3E-24 217.9 24.0 364 291-675 185-633 (924)
95 PRK05580 primosome assembly pr 99.8 6.4E-20 1.4E-24 219.3 23.8 287 294-585 162-558 (679)
96 KOG0925 mRNA splicing factor A 99.8 6.8E-20 1.5E-24 198.9 19.8 288 292-597 60-406 (699)
97 KOG0349 Putative DEAD-box RNA 99.8 1.1E-20 2.4E-25 202.1 13.1 112 451-576 499-614 (725)
98 COG1061 SSL2 DNA or RNA helica 99.8 1.1E-19 2.4E-24 207.5 21.8 250 294-561 55-376 (442)
99 PRK09694 helicase Cas3; Provis 99.8 8.4E-19 1.8E-23 211.8 24.3 96 456-563 558-664 (878)
100 KOG0950 DNA polymerase theta/e 99.8 1.5E-18 3.3E-23 202.1 18.0 306 276-590 218-625 (1008)
101 COG4098 comFA Superfamily II D 99.8 1.2E-17 2.6E-22 175.6 20.3 277 291-582 113-421 (441)
102 PRK12906 secA preprotein trans 99.8 1.5E-17 3.2E-22 196.7 20.8 120 447-583 428-559 (796)
103 PRK11448 hsdR type I restricti 99.8 5.4E-17 1.2E-21 201.3 24.7 257 294-563 433-802 (1123)
104 PRK12904 preprotein translocas 99.7 3.9E-16 8.5E-21 185.4 22.5 119 447-582 418-578 (830)
105 PRK13104 secA preprotein trans 99.7 5.4E-16 1.2E-20 184.4 22.4 110 455-581 441-591 (896)
106 COG1203 CRISPR-associated heli 99.7 4.8E-16 1E-20 187.7 17.9 266 296-576 216-549 (733)
107 KOG0949 Predicted helicase, DE 99.6 6.6E-15 1.4E-19 171.0 19.9 99 483-592 964-1062(1330)
108 PRK12899 secA preprotein trans 99.6 3.5E-14 7.7E-19 168.8 21.4 110 456-582 566-686 (970)
109 PF00271 Helicase_C: Helicase 99.6 2.8E-15 6E-20 129.6 8.8 75 476-562 3-78 (78)
110 PRK13107 preprotein translocas 99.6 8E-14 1.7E-18 165.7 23.1 109 456-581 447-595 (908)
111 PLN03142 Probable chromatin-re 99.6 1.5E-13 3.3E-18 168.2 24.6 110 457-577 486-599 (1033)
112 COG1110 Reverse gyrase [DNA re 99.6 2E-13 4.3E-18 160.6 22.7 237 290-538 93-418 (1187)
113 cd00268 DEADc DEAD-box helicas 99.5 3.7E-14 8.1E-19 145.0 12.2 154 270-423 10-192 (203)
114 COG0556 UvrB Helicase subunit 99.5 1.5E-12 3.3E-17 144.3 24.0 129 447-586 434-566 (663)
115 cd00079 HELICc Helicase superf 99.5 2.9E-13 6.2E-18 127.5 12.7 112 447-573 16-131 (131)
116 PRK05298 excinuclease ABC subu 99.5 4.1E-13 8.9E-18 160.3 16.8 128 447-585 434-565 (652)
117 TIGR00631 uvrb excinuclease AB 99.5 3E-13 6.6E-18 160.6 14.5 130 447-587 430-563 (655)
118 TIGR00348 hsdR type I site-spe 99.4 3.4E-12 7.4E-17 153.0 21.5 277 294-585 263-658 (667)
119 COG1198 PriA Primosomal protei 99.4 3.6E-12 7.7E-17 150.8 18.3 289 295-588 218-615 (730)
120 smart00490 HELICc helicase sup 99.4 6.8E-13 1.5E-17 114.4 9.1 80 471-562 2-82 (82)
121 COG4096 HsdR Type I site-speci 99.4 1E-11 2.2E-16 144.6 17.7 255 295-563 186-527 (875)
122 PF00270 DEAD: DEAD/DEAH box h 99.3 7.2E-13 1.6E-17 130.9 5.1 114 289-402 9-147 (169)
123 PF12513 SUV3_C: Mitochondrial 99.3 1.9E-12 4.2E-17 101.7 6.1 49 708-757 1-49 (49)
124 PRK12326 preprotein translocas 99.2 2.3E-10 4.9E-15 133.8 18.9 112 455-583 424-553 (764)
125 KOG0951 RNA helicase BRR2, DEA 99.2 3.1E-10 6.6E-15 135.6 19.1 290 292-592 1157-1510(1674)
126 PRK12900 secA preprotein trans 99.2 1.7E-10 3.8E-15 138.1 13.3 120 447-583 586-717 (1025)
127 KOG0385 Chromatin remodeling c 99.1 2.9E-09 6.2E-14 122.6 21.4 112 456-577 485-599 (971)
128 KOG1123 RNA polymerase II tran 99.1 1.2E-09 2.6E-14 120.2 16.4 261 295-580 321-656 (776)
129 KOG4150 Predicted ATP-dependen 99.1 1.8E-10 3.8E-15 127.9 9.0 70 483-563 559-629 (1034)
130 TIGR01407 dinG_rel DnaQ family 99.1 2.5E-09 5.5E-14 132.1 19.6 116 453-575 670-813 (850)
131 PRK13103 secA preprotein trans 98.9 2.6E-08 5.6E-13 119.5 19.6 109 456-581 447-595 (913)
132 smart00487 DEXDc DEAD-like hel 98.9 2.7E-09 5.9E-14 106.5 9.0 127 287-413 16-170 (201)
133 cd00046 DEXDc DEAD-like helica 98.9 2.7E-09 5.9E-14 100.2 8.4 99 295-393 1-122 (144)
134 CHL00122 secA preprotein trans 98.9 1.5E-07 3.2E-12 112.6 21.5 111 276-387 72-209 (870)
135 KOG0384 Chromodomain-helicase 98.8 8.5E-08 1.9E-12 115.5 18.7 111 456-577 697-811 (1373)
136 PF02399 Herpes_ori_bp: Origin 98.8 1.6E-07 3.6E-12 111.0 20.2 265 292-575 47-386 (824)
137 KOG0390 DNA repair protein, SN 98.8 4.3E-07 9.4E-12 107.8 23.3 101 465-575 603-705 (776)
138 KOG0387 Transcription-coupled 98.8 2.6E-07 5.6E-12 107.4 20.3 112 455-576 543-657 (923)
139 TIGR02562 cas3_yersinia CRISPR 98.8 2E-07 4.3E-12 112.9 19.5 106 465-581 765-899 (1110)
140 PRK12903 secA preprotein trans 98.8 4.1E-07 8.9E-12 108.4 20.8 118 447-582 414-544 (925)
141 PF04851 ResIII: Type III rest 98.8 1.7E-08 3.8E-13 100.5 7.9 50 294-343 25-75 (184)
142 PRK07246 bifunctional ATP-depe 98.8 5.2E-07 1.1E-11 110.7 22.0 114 455-576 645-783 (820)
143 PRK14873 primosome assembly pr 98.7 9.4E-07 2E-11 105.5 21.1 86 302-387 168-270 (665)
144 COG4889 Predicted helicase [Ge 98.7 3.1E-07 6.8E-12 107.0 16.0 85 481-574 497-585 (1518)
145 KOG0921 Dosage compensation co 98.6 2.8E-07 6E-12 107.8 12.4 277 291-576 390-773 (1282)
146 KOG0389 SNF2 family DNA-depend 98.5 7.3E-06 1.6E-10 95.5 22.0 112 456-577 775-888 (941)
147 PRK12902 secA preprotein trans 98.5 7.6E-06 1.6E-10 98.2 21.6 92 296-387 100-218 (939)
148 PF07652 Flavi_DEAD: Flaviviru 98.4 3.5E-07 7.5E-12 87.7 5.1 93 293-387 3-108 (148)
149 KOG1000 Chromatin remodeling p 98.3 4.8E-05 1E-09 84.8 19.6 130 457-597 491-625 (689)
150 KOG0392 SNF2 family DNA-depend 98.2 5.3E-05 1.2E-09 91.9 18.5 106 460-576 1342-1453(1549)
151 KOG1002 Nucleotide excision re 98.2 0.0007 1.5E-08 75.6 25.7 87 478-575 659-747 (791)
152 COG0610 Type I site-specific r 98.0 9.8E-05 2.1E-09 92.2 17.5 278 293-584 272-659 (962)
153 KOG0386 Chromatin remodeling c 97.7 0.00024 5.1E-09 85.2 12.1 107 459-575 728-836 (1157)
154 PF00176 SNF2_N: SNF2 family N 97.7 0.00016 3.5E-09 77.9 9.4 120 292-414 23-173 (299)
155 TIGR03117 cas_csf4 CRISPR-asso 97.6 9E-05 2E-09 87.9 6.8 51 292-342 14-70 (636)
156 KOG4439 RNA polymerase II tran 97.4 0.008 1.7E-07 70.2 18.7 85 480-574 769-855 (901)
157 PF06862 DUF1253: Protein of u 97.3 0.016 3.6E-07 66.0 20.0 126 447-584 289-422 (442)
158 KOG0952 DNA/RNA helicase MER3/ 97.3 8.8E-05 1.9E-09 89.2 1.8 108 294-402 943-1073(1230)
159 PF13245 AAA_19: Part of AAA d 97.2 0.00099 2.1E-08 57.6 6.8 45 294-338 10-62 (76)
160 PF09848 DUF2075: Uncharacteri 97.0 0.00091 2E-08 74.8 5.8 89 295-388 2-97 (352)
161 PF13604 AAA_30: AAA domain; P 97.0 0.0024 5.2E-08 65.4 8.0 108 294-414 18-131 (196)
162 PRK12901 secA preprotein trans 96.9 0.0029 6.4E-08 77.4 9.5 110 455-581 625-745 (1112)
163 smart00488 DEXDc2 DEAD-like he 96.9 0.0017 3.6E-08 70.7 6.5 52 291-342 24-85 (289)
164 smart00489 DEXDc3 DEAD-like he 96.9 0.0017 3.6E-08 70.7 6.5 52 291-342 24-85 (289)
165 PF02562 PhoH: PhoH-like prote 96.8 0.0013 2.8E-08 67.7 4.3 112 291-417 16-159 (205)
166 PF13307 Helicase_C_2: Helicas 96.6 0.0045 9.7E-08 61.8 6.9 118 452-575 4-149 (167)
167 PRK08074 bifunctional ATP-depe 96.5 0.0035 7.5E-08 78.8 6.4 46 292-337 274-324 (928)
168 KOG1802 RNA helicase nonsense 96.4 0.008 1.7E-07 69.7 8.0 61 285-345 416-481 (935)
169 PRK10875 recD exonuclease V su 96.3 0.011 2.3E-07 70.7 8.9 56 285-340 158-221 (615)
170 PRK10536 hypothetical protein; 96.3 0.0053 1.1E-07 65.1 5.5 120 291-416 71-215 (262)
171 TIGR01447 recD exodeoxyribonuc 96.3 0.018 4E-07 68.5 10.5 122 287-413 153-295 (586)
172 PRK11747 dinG ATP-dependent DN 96.2 0.01 2.3E-07 72.2 8.2 42 295-336 50-96 (697)
173 PF01443 Viral_helicase1: Vira 96.2 0.0055 1.2E-07 63.9 4.8 95 297-415 1-99 (234)
174 PF13086 AAA_11: AAA domain; P 96.1 0.0076 1.6E-07 62.1 5.6 54 287-340 9-75 (236)
175 PRK08074 bifunctional ATP-depe 96.1 0.03 6.4E-07 70.5 11.5 118 454-575 749-892 (928)
176 COG0653 SecA Preprotein transl 96.1 0.079 1.7E-06 64.3 14.4 110 455-581 426-549 (822)
177 smart00382 AAA ATPases associa 96.1 0.0031 6.6E-08 58.7 2.0 37 294-330 2-42 (148)
178 COG0553 HepA Superfamily II DN 96.0 0.029 6.4E-07 69.8 11.1 112 456-577 707-822 (866)
179 PF13401 AAA_22: AAA domain; P 96.0 0.0039 8.4E-08 58.7 2.5 18 293-310 3-20 (131)
180 KOG0391 SNF2 family DNA-depend 96.0 0.054 1.2E-06 66.4 11.9 111 457-577 1275-1387(1958)
181 PF07517 SecA_DEAD: SecA DEAD- 95.9 0.018 3.9E-07 61.7 7.2 103 283-387 81-210 (266)
182 TIGR01448 recD_rel helicase, p 95.9 0.019 4E-07 70.2 8.3 115 287-413 331-452 (720)
183 COG1199 DinG Rad3-related DNA 95.7 0.015 3.2E-07 70.6 6.5 116 454-575 476-616 (654)
184 PRK04296 thymidine kinase; Pro 95.7 0.0061 1.3E-07 62.1 2.6 33 294-326 2-38 (190)
185 COG1199 DinG Rad3-related DNA 95.4 0.096 2.1E-06 63.6 11.9 49 292-340 32-85 (654)
186 PRK06526 transposase; Provisio 95.3 0.023 5.1E-07 60.6 5.2 44 292-335 96-142 (254)
187 COG1219 ClpX ATP-dependent pro 95.3 0.0071 1.5E-07 65.0 1.2 30 292-321 95-126 (408)
188 cd00009 AAA The AAA+ (ATPases 95.2 0.033 7E-07 52.3 5.4 18 293-310 18-35 (151)
189 KOG1803 DNA helicase [Replicat 95.1 0.022 4.7E-07 66.0 4.7 50 290-339 196-250 (649)
190 TIGR00376 DNA helicase, putati 95.1 0.041 8.9E-07 66.3 7.3 54 291-344 169-227 (637)
191 COG1484 DnaC DNA replication p 95.1 0.033 7.2E-07 59.5 5.8 79 293-392 104-185 (254)
192 PRK12377 putative replication 95.1 0.047 1E-06 58.1 6.8 45 294-338 101-148 (248)
193 KOG0388 SNF2 family DNA-depend 95.1 0.1 2.3E-06 61.2 9.8 106 459-576 1046-1153(1185)
194 PRK08181 transposase; Validate 95.0 0.069 1.5E-06 57.5 7.8 45 292-336 104-151 (269)
195 PRK07952 DNA replication prote 94.9 0.058 1.3E-06 57.2 7.0 79 295-393 100-181 (244)
196 PRK08727 hypothetical protein; 94.9 0.057 1.2E-06 56.8 6.9 36 295-331 42-81 (233)
197 KOG2340 Uncharacterized conser 94.9 0.19 4.1E-06 57.5 11.0 110 459-577 554-668 (698)
198 PF00580 UvrD-helicase: UvrD/R 94.7 0.052 1.1E-06 58.8 6.1 49 293-341 12-68 (315)
199 PRK11747 dinG ATP-dependent DN 94.7 0.21 4.7E-06 61.0 11.9 114 456-575 533-673 (697)
200 PF13173 AAA_14: AAA domain 94.6 0.12 2.6E-06 48.9 7.7 33 293-325 1-36 (128)
201 cd01124 KaiC KaiC is a circadi 94.5 0.05 1.1E-06 54.5 5.1 48 297-345 2-53 (187)
202 PRK12723 flagellar biosynthesi 94.5 0.077 1.7E-06 60.1 7.0 85 292-387 172-267 (388)
203 PRK06921 hypothetical protein; 94.5 0.057 1.2E-06 58.1 5.7 45 293-337 116-164 (266)
204 TIGR00604 rad3 DNA repair heli 94.4 0.053 1.2E-06 66.4 5.9 51 291-341 26-83 (705)
205 smart00492 HELICc3 helicase su 94.0 0.33 7.2E-06 47.1 9.4 86 485-573 25-135 (141)
206 TIGR03117 cas_csf4 CRISPR-asso 94.0 0.28 6.2E-06 58.8 10.6 120 454-576 467-616 (636)
207 PRK15483 type III restriction- 94.0 0.13 2.8E-06 63.8 7.8 44 509-561 501-545 (986)
208 PRK14974 cell division protein 94.0 0.14 2.9E-06 57.0 7.4 114 294-412 140-261 (336)
209 COG3973 Superfamily I DNA and 93.8 0.1 2.2E-06 60.6 6.1 54 291-344 223-286 (747)
210 TIGR03420 DnaA_homol_Hda DnaA 93.7 0.21 4.5E-06 51.8 7.8 19 293-311 37-55 (226)
211 PRK08084 DNA replication initi 93.7 0.2 4.4E-06 52.8 7.7 17 294-310 45-61 (235)
212 TIGR02768 TraA_Ti Ti-type conj 93.5 0.17 3.7E-06 62.2 7.9 89 287-388 360-453 (744)
213 PRK06835 DNA replication prote 93.4 0.26 5.6E-06 54.7 8.3 44 293-336 182-228 (329)
214 PF05496 RuvB_N: Holliday junc 93.2 0.18 3.8E-06 52.6 6.1 16 296-311 52-67 (233)
215 cd01120 RecA-like_NTPases RecA 93.1 0.1 2.3E-06 50.2 4.2 31 297-327 2-36 (165)
216 PRK11889 flhF flagellar biosyn 93.0 0.42 9.2E-06 54.0 9.2 87 293-387 240-333 (436)
217 PRK08116 hypothetical protein; 92.8 0.26 5.7E-06 53.0 7.2 45 294-338 114-161 (268)
218 PF05970 PIF1: PIF1-like helic 92.8 0.11 2.4E-06 58.4 4.4 43 292-334 20-66 (364)
219 PF00448 SRP54: SRP54-type pro 92.8 0.19 4.1E-06 51.6 5.7 113 295-413 2-123 (196)
220 PRK14956 DNA polymerase III su 92.7 0.096 2.1E-06 60.5 3.7 16 296-311 42-57 (484)
221 KOG1015 Transcription regulato 92.6 0.42 9E-06 58.1 8.8 84 482-575 1189-1275(1567)
222 PRK06893 DNA replication initi 92.5 0.32 6.9E-06 51.1 7.1 31 295-325 40-74 (229)
223 TIGR03499 FlhF flagellar biosy 92.4 1.8 3.9E-05 47.0 13.0 48 293-340 193-248 (282)
224 KOG0745 Putative ATP-dependent 92.3 0.071 1.5E-06 59.7 2.0 31 292-322 224-256 (564)
225 PF07728 AAA_5: AAA domain (dy 92.3 0.13 2.8E-06 49.1 3.6 21 296-316 1-23 (139)
226 KOG1805 DNA replication helica 92.3 0.44 9.5E-06 58.2 8.6 58 288-345 678-740 (1100)
227 TIGR03877 thermo_KaiC_1 KaiC d 92.2 0.25 5.5E-06 52.0 5.9 51 293-344 20-74 (237)
228 PRK12901 secA preprotein trans 91.8 0.21 4.5E-06 61.9 5.4 54 297-350 185-246 (1112)
229 PF02534 T4SS-DNA_transf: Type 91.8 0.15 3.3E-06 59.2 4.2 55 295-349 45-101 (469)
230 PRK13851 type IV secretion sys 91.7 0.15 3.3E-06 56.8 3.8 41 291-331 159-202 (344)
231 PRK13889 conjugal transfer rel 91.6 0.37 8.1E-06 60.6 7.3 91 286-389 353-448 (988)
232 PRK05642 DNA replication initi 91.5 0.46 1E-05 50.1 7.0 36 295-331 46-85 (234)
233 smart00491 HELICc2 helicase su 91.4 0.87 1.9E-05 44.2 8.3 77 494-574 31-137 (142)
234 KOG0989 Replication factor C, 91.4 0.17 3.6E-06 54.6 3.4 26 375-401 130-155 (346)
235 PRK13826 Dtr system oriT relax 91.3 0.62 1.3E-05 59.1 8.9 83 293-388 396-482 (1102)
236 cd01126 TraG_VirD4 The TraG/Tr 91.3 0.14 3.1E-06 57.9 3.1 53 297-349 2-56 (384)
237 TIGR00604 rad3 DNA repair heli 91.3 1.2 2.5E-05 54.8 11.1 122 449-574 514-672 (705)
238 PF01695 IstB_IS21: IstB-like 91.2 0.3 6.5E-06 49.3 5.0 44 292-335 45-91 (178)
239 PRK08903 DnaA regulatory inact 91.2 0.44 9.6E-06 49.6 6.4 18 293-310 41-58 (227)
240 PHA02544 44 clamp loader, smal 91.2 0.55 1.2E-05 51.4 7.5 32 296-327 45-77 (316)
241 KOG0391 SNF2 family DNA-depend 91.0 1.8 3.8E-05 54.0 11.8 118 294-414 634-776 (1958)
242 TIGR03878 thermo_KaiC_2 KaiC d 90.9 0.55 1.2E-05 50.3 6.9 53 292-344 34-93 (259)
243 PRK11823 DNA repair protein Ra 90.9 0.6 1.3E-05 54.0 7.7 88 292-388 78-170 (446)
244 PF13555 AAA_29: P-loop contai 90.5 0.33 7.2E-06 40.2 3.7 26 293-318 22-49 (62)
245 PF06745 KaiC: KaiC; InterPro 90.5 0.37 7.9E-06 50.2 5.0 53 292-345 17-74 (226)
246 PRK00080 ruvB Holliday junctio 90.4 0.54 1.2E-05 52.0 6.6 18 295-312 52-69 (328)
247 COG1618 Predicted nucleotide k 90.4 5.1 0.00011 39.8 12.3 16 296-311 7-22 (179)
248 TIGR02782 TrbB_P P-type conjug 90.3 0.49 1.1E-05 51.8 6.0 41 291-331 129-175 (299)
249 COG1474 CDC6 Cdc6-related prot 90.2 0.42 9E-06 53.9 5.5 16 295-310 43-58 (366)
250 PRK07764 DNA polymerase III su 90.1 0.23 5E-06 61.4 3.7 16 296-311 39-54 (824)
251 PRK12900 secA preprotein trans 90.1 0.37 7.9E-06 59.7 5.2 90 298-387 155-271 (1025)
252 PF13871 Helicase_C_4: Helicas 90.0 0.78 1.7E-05 49.5 7.1 67 498-577 52-127 (278)
253 TIGR00631 uvrb excinuclease AB 90.0 0.83 1.8E-05 55.4 8.1 46 296-341 31-77 (655)
254 KOG0991 Replication factor C, 90.0 0.47 1E-05 49.4 5.1 16 296-311 50-65 (333)
255 COG1875 NYN ribonuclease and A 90.0 0.33 7.1E-06 53.6 4.2 36 376-415 353-389 (436)
256 cd01130 VirB11-like_ATPase Typ 89.9 0.57 1.2E-05 47.4 5.7 20 291-310 22-41 (186)
257 PRK00149 dnaA chromosomal repl 89.8 0.38 8.2E-06 55.8 4.9 72 295-388 149-225 (450)
258 TIGR00635 ruvB Holliday juncti 89.8 0.6 1.3E-05 50.9 6.2 17 295-311 31-47 (305)
259 PRK13833 conjugal transfer pro 89.8 0.51 1.1E-05 52.2 5.6 40 291-330 141-186 (323)
260 PF00004 AAA: ATPase family as 89.6 0.52 1.1E-05 43.8 4.9 15 297-311 1-15 (132)
261 PRK13900 type IV secretion sys 89.4 0.33 7.2E-06 53.9 3.9 41 291-331 157-200 (332)
262 PRK13897 type IV secretion sys 89.4 0.36 7.9E-06 57.7 4.4 55 295-349 159-215 (606)
263 COG2804 PulE Type II secretory 89.3 0.64 1.4E-05 53.6 6.1 25 294-318 258-285 (500)
264 PF00437 T2SE: Type II/IV secr 89.2 0.32 6.9E-06 52.2 3.5 40 292-331 125-168 (270)
265 PRK11054 helD DNA helicase IV; 89.2 1 2.2E-05 54.9 8.2 51 291-341 206-264 (684)
266 COG1419 FlhF Flagellar GTP-bin 89.1 1.5 3.3E-05 49.4 8.8 56 292-347 201-265 (407)
267 TIGR02928 orc1/cdc6 family rep 89.1 0.39 8.5E-06 53.7 4.2 16 295-310 41-56 (365)
268 TIGR03015 pepcterm_ATPase puta 89.0 0.28 6.1E-06 52.3 2.8 18 294-311 43-60 (269)
269 PHA03311 helicase-primase subu 88.9 0.97 2.1E-05 54.2 7.3 44 295-339 72-115 (828)
270 COG1702 PhoH Phosphate starvat 88.8 0.51 1.1E-05 51.8 4.6 64 279-353 128-197 (348)
271 PRK14961 DNA polymerase III su 88.8 0.47 1E-05 53.4 4.6 16 296-311 40-55 (363)
272 PRK13894 conjugal transfer ATP 88.8 0.58 1.3E-05 51.7 5.1 20 291-310 145-164 (319)
273 PF07724 AAA_2: AAA domain (Cd 88.8 0.36 7.8E-06 48.4 3.2 15 296-310 5-19 (171)
274 PHA03333 putative ATPase subun 88.7 2 4.3E-05 51.6 9.6 52 290-341 183-239 (752)
275 COG2805 PilT Tfp pilus assembl 88.7 0.5 1.1E-05 51.0 4.3 19 292-310 123-141 (353)
276 PRK04328 hypothetical protein; 88.6 0.84 1.8E-05 48.6 6.1 51 293-344 22-76 (249)
277 COG2256 MGS1 ATPase related to 88.5 0.98 2.1E-05 50.7 6.6 44 296-339 50-94 (436)
278 PF00308 Bac_DnaA: Bacterial d 88.4 1.1 2.3E-05 46.8 6.6 70 296-388 36-111 (219)
279 PRK14958 DNA polymerase III su 88.4 0.39 8.4E-06 56.5 3.7 16 296-311 40-55 (509)
280 TIGR00362 DnaA chromosomal rep 88.3 0.52 1.1E-05 53.8 4.6 44 295-339 137-186 (405)
281 PRK14964 DNA polymerase III su 88.3 0.55 1.2E-05 54.7 4.8 17 295-311 36-52 (491)
282 PRK07003 DNA polymerase III su 88.2 0.4 8.6E-06 58.1 3.6 16 296-311 40-55 (830)
283 PRK00411 cdc6 cell division co 88.2 0.47 1E-05 53.7 4.1 17 294-310 55-71 (394)
284 PRK08533 flagellar accessory p 87.9 0.98 2.1E-05 47.5 6.0 52 292-344 22-77 (230)
285 COG1110 Reverse gyrase [DNA re 87.6 1.5 3.3E-05 54.1 8.0 65 453-519 121-191 (1187)
286 PRK04195 replication factor C 87.6 1.2 2.6E-05 52.1 7.1 18 294-311 39-56 (482)
287 TIGR02688 conserved hypothetic 87.5 1.5 3.1E-05 50.1 7.3 21 291-311 206-226 (449)
288 PRK14960 DNA polymerase III su 87.3 0.51 1.1E-05 56.5 3.7 16 296-311 39-54 (702)
289 PRK12422 chromosomal replicati 87.2 0.95 2.1E-05 52.4 5.9 71 295-388 142-216 (445)
290 PRK05973 replicative DNA helic 87.1 0.91 2E-05 48.0 5.1 52 292-344 62-117 (237)
291 PLN03025 replication factor C 87.1 1.3 2.8E-05 48.9 6.6 16 296-311 36-51 (319)
292 PRK10436 hypothetical protein; 87.0 0.61 1.3E-05 54.1 4.1 19 292-310 216-234 (462)
293 cd01121 Sms Sms (bacterial rad 86.8 1.5 3.3E-05 49.5 7.1 52 292-344 80-135 (372)
294 PTZ00293 thymidine kinase; Pro 86.8 0.7 1.5E-05 47.9 4.0 36 293-328 3-42 (211)
295 PRK14722 flhF flagellar biosyn 86.7 4.1 8.9E-05 46.0 10.3 84 292-387 135-228 (374)
296 PRK12323 DNA polymerase III su 86.7 0.6 1.3E-05 55.8 3.9 16 296-311 40-55 (700)
297 TIGR02655 circ_KaiC circadian 86.7 1.1 2.3E-05 52.6 6.0 52 292-344 261-316 (484)
298 cd01129 PulE-GspE PulE/GspE Th 86.6 0.73 1.6E-05 49.5 4.2 18 293-310 79-96 (264)
299 PRK09183 transposase/IS protei 86.6 1.3 2.8E-05 47.5 6.1 44 291-335 99-146 (259)
300 PRK14087 dnaA chromosomal repl 86.5 0.88 1.9E-05 52.7 5.1 72 295-387 142-219 (450)
301 PF05127 Helicase_RecD: Helica 86.5 0.12 2.5E-06 52.2 -1.8 43 298-340 1-48 (177)
302 PRK13822 conjugal transfer cou 86.5 0.76 1.7E-05 55.5 4.7 56 294-349 224-281 (641)
303 PRK14949 DNA polymerase III su 86.4 0.53 1.2E-05 58.1 3.3 16 296-311 40-55 (944)
304 PF10412 TrwB_AAD_bind: Type I 86.4 0.75 1.6E-05 52.2 4.4 51 286-336 7-61 (386)
305 PRK12402 replication factor C 86.3 0.76 1.7E-05 50.6 4.3 16 296-311 38-53 (337)
306 PRK05563 DNA polymerase III su 86.3 0.68 1.5E-05 55.2 4.1 17 295-311 39-55 (559)
307 PRK12724 flagellar biosynthesi 86.1 1.6 3.5E-05 49.8 6.7 52 293-344 222-281 (432)
308 KOG0058 Peptide exporter, ABC 86.0 0.74 1.6E-05 55.1 4.1 45 292-336 492-541 (716)
309 PRK14952 DNA polymerase III su 85.9 0.77 1.7E-05 54.8 4.3 16 296-311 37-52 (584)
310 COG1221 PspF Transcriptional r 85.8 0.8 1.7E-05 51.9 4.1 85 292-388 99-187 (403)
311 TIGR00595 priA primosomal prot 85.8 2.5 5.4E-05 49.8 8.5 74 459-535 27-102 (505)
312 PRK12726 flagellar biosynthesi 85.8 1.4 3E-05 49.8 5.9 53 292-344 204-263 (407)
313 TIGR02655 circ_KaiC circadian 85.7 1.2 2.6E-05 52.2 5.7 53 292-345 19-76 (484)
314 PRK13850 type IV secretion sys 85.7 0.84 1.8E-05 55.3 4.5 55 295-349 140-196 (670)
315 PF05621 TniB: Bacterial TniB 85.6 0.62 1.3E-05 50.7 3.0 86 295-388 62-159 (302)
316 PF12846 AAA_10: AAA-like doma 85.6 1.1 2.5E-05 47.9 5.2 38 295-332 2-43 (304)
317 COG2255 RuvB Holliday junction 85.5 1.4 3.1E-05 47.3 5.5 16 296-311 54-69 (332)
318 COG0467 RAD55 RecA-superfamily 85.4 1.4 2.9E-05 47.1 5.6 55 292-346 21-78 (260)
319 TIGR03881 KaiC_arch_4 KaiC dom 85.4 1.5 3.3E-05 45.6 5.9 51 293-344 19-73 (229)
320 TIGR00064 ftsY signal recognit 85.3 1.8 3.8E-05 46.8 6.4 50 293-342 71-127 (272)
321 COG4962 CpaF Flp pilus assembl 85.2 0.66 1.4E-05 51.1 3.0 40 292-331 171-213 (355)
322 TIGR01547 phage_term_2 phage t 85.2 2.7 5.9E-05 47.7 8.2 44 296-339 3-54 (396)
323 PRK05580 primosome assembly pr 85.2 2.9 6.3E-05 51.1 8.9 74 459-535 192-267 (679)
324 PRK06645 DNA polymerase III su 85.1 0.76 1.7E-05 53.9 3.7 16 296-311 45-60 (507)
325 PRK10416 signal recognition pa 85.1 1.7 3.6E-05 48.1 6.2 46 293-338 113-164 (318)
326 PRK10919 ATP-dependent DNA hel 85.1 1.3 2.9E-05 54.0 5.9 48 294-341 15-70 (672)
327 TIGR00416 sms DNA repair prote 85.0 2.2 4.8E-05 49.5 7.4 52 292-344 92-147 (454)
328 PRK14965 DNA polymerase III su 84.9 0.82 1.8E-05 54.7 3.9 16 296-311 40-55 (576)
329 PRK14962 DNA polymerase III su 84.8 0.95 2E-05 52.8 4.3 16 296-311 38-53 (472)
330 cd01127 TrwB Bacterial conjuga 84.7 0.91 2E-05 52.0 4.1 48 286-333 34-85 (410)
331 cd01131 PilT Pilus retraction 84.7 0.91 2E-05 46.5 3.7 15 296-310 3-17 (198)
332 cd00544 CobU Adenosylcobinamid 84.6 1.4 3E-05 44.1 4.8 44 297-340 2-46 (169)
333 TIGR02767 TraG-Ti Ti-type conj 84.5 1.2 2.5E-05 53.7 4.9 55 295-349 212-269 (623)
334 PHA00350 putative assembly pro 84.5 1.9 4.1E-05 49.0 6.3 28 296-323 3-34 (399)
335 TIGR02788 VirB11 P-type DNA tr 84.4 0.87 1.9E-05 50.1 3.6 20 291-310 141-160 (308)
336 PRK14712 conjugal transfer nic 84.4 2.7 5.9E-05 55.3 8.4 92 287-388 843-944 (1623)
337 PRK05703 flhF flagellar biosyn 84.4 1.9 4.2E-05 49.5 6.5 85 292-387 219-312 (424)
338 PHA03368 DNA packaging termina 84.2 6.6 0.00014 47.2 10.7 126 262-389 223-367 (738)
339 COG0466 Lon ATP-dependent Lon 84.2 2.5 5.4E-05 50.7 7.3 87 292-402 348-444 (782)
340 COG0630 VirB11 Type IV secreto 84.2 1.2 2.6E-05 49.1 4.5 54 277-330 125-182 (312)
341 TIGR01075 uvrD DNA helicase II 84.1 1.5 3.2E-05 54.0 5.8 49 293-341 16-72 (715)
342 PF00265 TK: Thymidine kinase; 83.9 1.7 3.7E-05 43.8 5.2 35 294-328 1-39 (176)
343 PRK14953 DNA polymerase III su 83.9 1.1 2.4E-05 52.4 4.4 16 296-311 40-55 (486)
344 TIGR02538 type_IV_pilB type IV 83.7 1 2.2E-05 53.8 4.1 18 293-310 315-332 (564)
345 PF12340 DUF3638: Protein of u 83.6 1.7 3.6E-05 45.6 5.1 49 293-341 40-92 (229)
346 PRK10917 ATP-dependent DNA hel 83.4 4.3 9.3E-05 49.7 9.3 76 459-536 312-393 (681)
347 PRK11773 uvrD DNA-dependent he 83.2 1.6 3.5E-05 53.7 5.6 49 293-341 21-77 (721)
348 PTZ00112 origin recognition co 83.1 1.9 4E-05 53.2 5.7 38 613-652 1040-1078(1164)
349 COG3587 Restriction endonuclea 83.0 0.82 1.8E-05 55.3 2.7 74 507-590 481-566 (985)
350 PRK06731 flhF flagellar biosyn 82.9 5.6 0.00012 42.9 8.9 87 293-387 74-167 (270)
351 PRK10867 signal recognition pa 82.9 2.1 4.6E-05 49.2 6.0 45 295-339 101-152 (433)
352 PRK13342 recombination factor 82.8 2.2 4.7E-05 48.9 6.1 16 296-311 38-53 (413)
353 PRK14729 miaA tRNA delta(2)-is 82.7 1.4 3E-05 48.3 4.2 24 294-317 4-27 (300)
354 PRK13709 conjugal transfer nic 82.6 3 6.4E-05 55.6 7.9 93 286-388 974-1076(1747)
355 PRK14969 DNA polymerase III su 82.6 1 2.2E-05 53.3 3.3 16 296-311 40-55 (527)
356 PRK14951 DNA polymerase III su 82.5 1.1 2.4E-05 53.8 3.6 16 296-311 40-55 (618)
357 cd00984 DnaB_C DnaB helicase C 82.5 2.4 5.2E-05 44.4 5.9 43 292-334 11-61 (242)
358 COG0552 FtsY Signal recognitio 82.2 1.7 3.6E-05 47.9 4.5 89 296-388 141-235 (340)
359 PRK05896 DNA polymerase III su 82.2 1.1 2.4E-05 53.4 3.4 17 295-311 39-55 (605)
360 TIGR02237 recomb_radB DNA repa 82.2 1.7 3.6E-05 44.6 4.5 35 292-326 10-48 (209)
361 PRK08691 DNA polymerase III su 82.2 1.1 2.3E-05 54.2 3.4 17 295-311 39-55 (709)
362 TIGR02760 TraI_TIGR conjugativ 82.2 2.5 5.4E-05 57.5 7.1 52 287-338 437-494 (1960)
363 TIGR03819 heli_sec_ATPase heli 82.1 1.9 4.2E-05 48.0 5.2 40 291-330 175-217 (340)
364 PRK06067 flagellar accessory p 82.1 2.6 5.7E-05 44.1 6.0 52 293-345 24-79 (234)
365 PRK13700 conjugal transfer pro 82.0 2.1 4.5E-05 51.9 5.6 65 271-335 160-230 (732)
366 TIGR02524 dot_icm_DotB Dot/Icm 81.9 1.6 3.6E-05 49.0 4.6 19 292-310 132-150 (358)
367 PF03354 Terminase_1: Phage Te 81.7 5.5 0.00012 46.6 9.0 47 295-341 23-77 (477)
368 PRK14950 DNA polymerase III su 81.5 1.8 4E-05 51.9 5.1 17 295-311 39-55 (585)
369 PF01745 IPT: Isopentenyl tran 81.5 1.3 2.9E-05 45.8 3.2 29 296-324 3-31 (233)
370 PRK05800 cobU adenosylcobinami 81.4 2.2 4.7E-05 42.7 4.8 45 295-339 2-47 (170)
371 TIGR02533 type_II_gspE general 81.3 1.1 2.5E-05 52.3 3.1 17 294-310 242-258 (486)
372 TIGR01425 SRP54_euk signal rec 81.2 2.9 6.3E-05 48.0 6.3 46 295-340 101-152 (429)
373 TIGR01420 pilT_fam pilus retra 81.1 1.5 3.2E-05 49.0 3.9 19 292-310 120-138 (343)
374 COG0470 HolB ATPase involved i 81.0 3.1 6.7E-05 45.4 6.3 16 296-311 26-41 (325)
375 PLN02165 adenylate isopentenyl 80.9 1.6 3.5E-05 48.3 4.0 22 292-313 41-62 (334)
376 TIGR00596 rad1 DNA repair prot 80.8 7.3 0.00016 48.4 9.9 14 514-527 431-444 (814)
377 TIGR01074 rep ATP-dependent DN 80.8 2.7 5.9E-05 51.2 6.3 49 293-341 13-69 (664)
378 PRK07994 DNA polymerase III su 80.7 1.2 2.6E-05 53.7 3.1 15 297-311 41-55 (647)
379 PRK14086 dnaA chromosomal repl 80.6 2.8 6E-05 50.1 6.0 71 296-388 316-391 (617)
380 PRK14963 DNA polymerase III su 80.6 1.5 3.3E-05 51.6 3.8 16 296-311 38-53 (504)
381 PF13207 AAA_17: AAA domain; P 80.5 1.1 2.5E-05 41.3 2.3 14 297-310 2-15 (121)
382 TIGR03880 KaiC_arch_3 KaiC dom 80.5 3 6.5E-05 43.3 5.7 51 293-344 15-69 (224)
383 PRK06995 flhF flagellar biosyn 80.4 3.1 6.8E-05 48.5 6.2 52 293-344 255-315 (484)
384 PF12775 AAA_7: P-loop contain 80.2 1.5 3.3E-05 47.4 3.4 25 291-315 30-54 (272)
385 PRK00771 signal recognition pa 80.2 3.4 7.3E-05 47.7 6.4 51 294-344 95-152 (437)
386 PF01935 DUF87: Domain of unkn 80.1 1.9 4.1E-05 44.9 4.0 38 292-329 21-63 (229)
387 PRK07133 DNA polymerase III su 80.0 1.9 4.2E-05 52.4 4.5 16 296-311 42-57 (725)
388 PF13177 DNA_pol3_delta2: DNA 80.0 4.7 0.0001 39.9 6.6 17 296-312 21-37 (162)
389 PRK13876 conjugal transfer cou 79.9 1.5 3.3E-05 53.1 3.6 49 294-342 144-194 (663)
390 PRK14957 DNA polymerase III su 79.9 1.6 3.5E-05 51.6 3.8 16 296-311 40-55 (546)
391 PRK14873 primosome assembly pr 79.8 5.6 0.00012 48.4 8.4 73 459-534 190-265 (665)
392 PRK08939 primosomal protein Dn 79.6 3.1 6.7E-05 45.7 5.7 45 293-338 155-203 (306)
393 TIGR03743 SXT_TraD conjugative 79.5 4 8.6E-05 49.4 7.0 52 293-344 175-232 (634)
394 TIGR02238 recomb_DMC1 meiotic 79.3 1.6 3.5E-05 48.1 3.4 33 293-325 95-137 (313)
395 TIGR02525 plasmid_TraJ plasmid 79.2 2.3 5.1E-05 48.0 4.6 18 293-310 148-165 (372)
396 KOG1969 DNA replication checkp 79.0 18 0.00038 43.9 11.7 79 239-320 271-352 (877)
397 PRK13764 ATPase; Provisional 78.8 2.3 5.1E-05 50.8 4.7 39 292-330 255-297 (602)
398 PRK12727 flagellar biosynthesi 78.8 12 0.00027 44.1 10.3 47 292-338 348-402 (559)
399 cd01394 radB RadB. The archaea 78.7 2.6 5.5E-05 43.5 4.5 34 292-325 17-54 (218)
400 TIGR00959 ffh signal recogniti 78.5 3.7 8.1E-05 47.2 6.1 50 295-344 100-157 (428)
401 PRK04841 transcriptional regul 78.5 4 8.6E-05 51.4 6.9 34 292-325 30-63 (903)
402 PRK13341 recombination factor 78.4 3.6 7.7E-05 50.5 6.2 16 296-311 54-69 (725)
403 COG2812 DnaX DNA polymerase II 78.4 0.88 1.9E-05 53.2 1.0 27 374-404 119-145 (515)
404 TIGR02012 tigrfam_recA protein 78.4 3.8 8.2E-05 45.3 5.8 49 293-344 54-106 (321)
405 PRK14530 adenylate kinase; Pro 78.3 1.5 3.4E-05 45.3 2.7 19 292-310 1-19 (215)
406 cd02023 UMPK Uridine monophosp 78.3 2.5 5.4E-05 42.9 4.2 25 297-321 2-28 (198)
407 TIGR02397 dnaX_nterm DNA polym 78.2 7 0.00015 43.4 8.1 16 295-310 37-52 (355)
408 COG4128 Zot Zonula occludens t 78.1 4.4 9.5E-05 43.7 5.9 33 297-330 4-40 (398)
409 PRK00091 miaA tRNA delta(2)-is 78.0 2.4 5.2E-05 46.6 4.2 20 294-313 4-23 (307)
410 PF13238 AAA_18: AAA domain; P 78.0 1.4 3.1E-05 40.6 2.2 14 297-310 1-14 (129)
411 PRK09111 DNA polymerase III su 77.9 2.4 5.3E-05 50.8 4.5 16 296-311 48-63 (598)
412 TIGR00678 holB DNA polymerase 77.8 9.8 0.00021 38.3 8.4 17 295-311 15-31 (188)
413 cd00983 recA RecA is a bacter 77.7 4.9 0.00011 44.5 6.5 49 293-344 54-106 (325)
414 PRK14955 DNA polymerase III su 77.4 2.4 5.2E-05 48.4 4.1 16 296-311 40-55 (397)
415 TIGR00235 udk uridine kinase. 77.4 2.4 5.2E-05 43.6 3.8 18 293-310 5-22 (207)
416 PRK09519 recA DNA recombinatio 77.3 2.3 5.1E-05 52.2 4.1 88 293-387 59-151 (790)
417 PRK10865 protein disaggregatio 77.2 5.2 0.00011 50.3 7.3 17 294-310 199-215 (857)
418 PRK11034 clpA ATP-dependent Cl 76.8 9.5 0.00021 47.2 9.2 17 294-310 207-223 (758)
419 PRK10787 DNA-binding ATP-depen 76.7 5.9 0.00013 49.2 7.5 18 293-310 348-365 (784)
420 TIGR03263 guanyl_kin guanylate 76.4 1.9 4.1E-05 43.0 2.6 17 294-310 1-17 (180)
421 PF13671 AAA_33: AAA domain; P 76.4 2.9 6.3E-05 39.6 3.8 17 297-313 2-18 (143)
422 cd01122 GP4d_helicase GP4d_hel 76.3 5.1 0.00011 42.8 6.1 48 291-339 27-79 (271)
423 TIGR02639 ClpA ATP-dependent C 76.3 13 0.00028 46.0 10.3 17 294-310 203-219 (731)
424 PRK13880 conjugal transfer cou 76.2 2.1 4.6E-05 51.8 3.4 53 295-347 176-231 (636)
425 cd03115 SRP The signal recogni 76.1 5 0.00011 39.7 5.6 37 296-332 2-44 (173)
426 PRK09354 recA recombinase A; P 75.7 4.8 0.0001 45.0 5.7 49 293-344 59-111 (349)
427 PRK07940 DNA polymerase III su 75.6 6.4 0.00014 44.9 6.8 17 295-311 37-53 (394)
428 PRK05480 uridine/cytidine kina 75.5 3.5 7.6E-05 42.3 4.4 17 294-310 6-22 (209)
429 TIGR00643 recG ATP-dependent D 75.4 9.7 0.00021 46.2 8.8 76 459-536 286-367 (630)
430 PRK00300 gmk guanylate kinase; 75.2 2.2 4.7E-05 43.5 2.7 19 292-310 3-21 (205)
431 PF02456 Adeno_IVa2: Adenoviru 75.1 3.3 7.1E-05 45.1 4.0 35 296-331 89-130 (369)
432 TIGR02640 gas_vesic_GvpN gas v 75.1 4.3 9.2E-05 43.5 5.1 21 291-311 18-38 (262)
433 TIGR01073 pcrA ATP-dependent D 75.0 4.4 9.6E-05 49.9 5.8 49 293-341 16-72 (726)
434 COG5008 PilU Tfp pilus assembl 75.0 2.4 5.3E-05 45.1 3.0 19 292-310 125-143 (375)
435 PRK05298 excinuclease ABC subu 74.8 5.5 0.00012 48.5 6.5 46 296-341 34-80 (652)
436 TIGR03754 conj_TOL_TraD conjug 74.7 6.2 0.00013 47.6 6.7 52 293-344 179-236 (643)
437 TIGR00767 rho transcription te 74.7 1.5 3.3E-05 49.7 1.5 19 292-310 166-184 (415)
438 TIGR03345 VI_ClpV1 type VI sec 74.6 7.2 0.00016 49.0 7.5 31 296-326 598-631 (852)
439 TIGR02759 TraD_Ftype type IV c 74.6 5 0.00011 48.0 5.9 39 291-329 173-215 (566)
440 COG1126 GlnQ ABC-type polar am 74.6 2.4 5.2E-05 44.0 2.8 26 291-316 25-52 (240)
441 PF13481 AAA_25: AAA domain; P 74.6 5.9 0.00013 39.7 5.7 48 293-341 31-92 (193)
442 KOG1016 Predicted DNA helicase 74.6 7.1 0.00015 47.0 6.8 82 485-576 765-848 (1387)
443 PRK14959 DNA polymerase III su 74.5 3.3 7.1E-05 49.7 4.3 16 296-311 40-55 (624)
444 PRK14948 DNA polymerase III su 74.4 3.6 7.7E-05 49.7 4.7 16 296-311 40-55 (620)
445 PF00625 Guanylate_kin: Guanyl 74.4 3.9 8.4E-05 41.1 4.3 19 293-311 1-19 (183)
446 TIGR02760 TraI_TIGR conjugativ 74.4 8.4 0.00018 52.6 8.5 91 287-389 1027-1127(1960)
447 PF02689 Herpes_Helicase: Heli 74.3 6.8 0.00015 47.4 6.8 44 295-339 60-103 (818)
448 PRK06647 DNA polymerase III su 74.1 3.6 7.8E-05 49.1 4.5 16 296-311 40-55 (563)
449 KOG0741 AAA+-type ATPase [Post 74.1 6 0.00013 46.0 6.0 23 294-316 256-280 (744)
450 PRK08233 hypothetical protein; 74.1 3.8 8.3E-05 40.6 4.1 18 293-310 2-19 (182)
451 TIGR02236 recomb_radA DNA repa 73.8 3.7 8.1E-05 45.0 4.3 33 293-325 94-136 (310)
452 TIGR02785 addA_Gpos recombinat 73.2 6.6 0.00014 51.4 7.0 50 292-341 12-68 (1232)
453 PF01580 FtsK_SpoIIIE: FtsK/Sp 73.2 4 8.7E-05 41.7 4.1 17 294-310 38-54 (205)
454 COG1074 RecB ATP-dependent exo 73.1 4.7 0.0001 52.3 5.5 50 292-341 14-72 (1139)
455 PLN02748 tRNA dimethylallyltra 72.8 4 8.6E-05 47.4 4.3 22 292-313 20-41 (468)
456 CHL00181 cbbX CbbX; Provisiona 72.7 4.4 9.5E-05 44.2 4.5 27 275-310 49-75 (287)
457 cd00071 GMPK Guanosine monopho 72.7 3.3 7.2E-05 39.8 3.2 14 297-310 2-15 (137)
458 PRK06305 DNA polymerase III su 72.6 3.6 7.7E-05 47.8 4.0 17 295-311 40-56 (451)
459 COG1136 SalX ABC-type antimicr 72.5 3.2 6.9E-05 43.5 3.2 20 291-310 28-47 (226)
460 cd00227 CPT Chloramphenicol (C 72.4 2.8 6.1E-05 41.8 2.7 18 293-310 1-18 (175)
461 TIGR02868 CydC thiol reductant 72.3 3.4 7.4E-05 48.8 3.8 20 291-310 358-377 (529)
462 PRK00131 aroK shikimate kinase 72.2 2.7 5.9E-05 41.2 2.5 20 292-311 2-21 (175)
463 COG1435 Tdk Thymidine kinase [ 72.0 1.7 3.8E-05 44.2 1.1 35 293-327 3-41 (201)
464 TIGR02322 phosphon_PhnN phosph 71.9 3.3 7.2E-05 41.2 3.1 17 294-310 1-17 (179)
465 PRK09112 DNA polymerase III su 71.8 8.8 0.00019 43.1 6.7 16 296-311 47-62 (351)
466 PRK09361 radB DNA repair and r 71.7 5.1 0.00011 41.5 4.6 33 293-325 22-58 (225)
467 KOG0701 dsRNA-specific nucleas 71.7 3.5 7.6E-05 54.0 3.8 87 466-563 302-400 (1606)
468 TIGR03346 chaperone_ClpB ATP-d 71.6 19 0.00042 45.3 10.4 151 293-474 193-370 (852)
469 COG1444 Predicted P-loop ATPas 71.6 10 0.00022 46.4 7.5 90 294-387 231-336 (758)
470 PRK08118 topology modulation p 71.4 2.8 6.1E-05 41.7 2.4 15 296-310 3-17 (167)
471 TIGR00174 miaA tRNA isopenteny 71.4 3.9 8.5E-05 44.5 3.7 18 297-314 2-19 (287)
472 COG0324 MiaA tRNA delta(2)-iso 71.3 4.3 9.4E-05 44.5 4.0 19 295-313 4-22 (308)
473 TIGR02880 cbbX_cfxQ probable R 71.1 4.9 0.00011 43.7 4.4 18 294-311 58-75 (284)
474 COG1120 FepC ABC-type cobalami 70.9 3.5 7.5E-05 44.1 3.1 28 291-318 25-54 (258)
475 PRK04301 radA DNA repair and r 70.9 4.7 0.0001 44.4 4.3 33 293-325 101-143 (317)
476 PRK15455 PrkA family serine pr 70.7 6.1 0.00013 46.9 5.2 46 252-310 72-119 (644)
477 PF03237 Terminase_6: Terminas 70.5 16 0.00034 40.1 8.4 37 298-334 1-43 (384)
478 PRK14723 flhF flagellar biosyn 70.5 7.5 0.00016 47.8 6.1 53 293-345 184-245 (767)
479 PRK08451 DNA polymerase III su 70.4 4.1 8.9E-05 48.2 3.8 16 296-311 38-53 (535)
480 TIGR03345 VI_ClpV1 type VI sec 70.4 3.5 7.6E-05 51.7 3.4 16 295-310 209-224 (852)
481 PRK05707 DNA polymerase III su 70.2 9.2 0.0002 42.5 6.4 16 296-311 24-39 (328)
482 TIGR00763 lon ATP-dependent pr 70.2 5.9 0.00013 49.3 5.3 18 293-310 346-363 (775)
483 COG4608 AppF ABC-type oligopep 69.8 6.3 0.00014 42.3 4.7 101 291-400 36-153 (268)
484 PRK10078 ribose 1,5-bisphospho 69.7 3.2 6.9E-05 41.9 2.4 17 294-310 2-18 (186)
485 TIGR02030 BchI-ChlI magnesium 69.6 5.5 0.00012 44.4 4.4 34 294-327 25-60 (337)
486 PRK07261 topology modulation p 69.6 3.3 7.1E-05 41.4 2.5 16 296-311 2-17 (171)
487 COG0513 SrmB Superfamily II DN 69.3 18 0.00039 42.8 8.9 70 460-535 102-183 (513)
488 cd01125 repA Hexameric Replica 69.0 11 0.00023 39.7 6.3 22 294-315 1-22 (239)
489 KOG2373 Predicted mitochondria 68.8 4.5 9.8E-05 44.5 3.4 46 294-339 273-325 (514)
490 PRK13695 putative NTPase; Prov 68.7 31 0.00067 34.2 9.3 15 296-310 2-16 (174)
491 PF09382 RQC: RQC domain; Int 68.7 1.7 3.6E-05 39.7 0.1 47 672-726 7-53 (106)
492 TIGR00041 DTMP_kinase thymidyl 68.4 6.3 0.00014 39.7 4.3 18 293-310 2-19 (195)
493 TIGR01243 CDC48 AAA family ATP 68.4 10 0.00023 46.8 7.0 18 293-310 211-228 (733)
494 PHA02533 17 large terminase pr 68.3 17 0.00037 43.1 8.4 48 293-340 73-126 (534)
495 PF05729 NACHT: NACHT domain 68.3 6.6 0.00014 37.8 4.3 16 295-310 1-16 (166)
496 TIGR02639 ClpA ATP-dependent C 68.2 7.9 0.00017 47.8 5.8 15 296-310 486-500 (731)
497 cd01123 Rad51_DMC1_radA Rad51_ 68.0 6.3 0.00014 41.0 4.3 34 292-325 17-60 (235)
498 PRK14971 DNA polymerase III su 68.0 4.9 0.00011 48.5 3.9 16 296-311 41-56 (614)
499 PRK05541 adenylylsulfate kinas 67.9 7.5 0.00016 38.6 4.7 19 292-310 5-23 (176)
500 PRK09825 idnK D-gluconate kina 67.8 4.9 0.00011 40.4 3.3 19 292-310 1-19 (176)
No 1
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-96 Score=802.35 Aligned_cols=598 Identities=48% Similarity=0.807 Sum_probs=551.7
Q ss_pred HHHhhcchhhhhhhhhhhcCCCCCCChhHHHHHHhhhcCCChhhh-hH--hhcCCChhhhhhhhhhhHhhhhccCcHHHH
Q 003587 192 FRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQ-YL--VWLGPSDDAVKFLFPIFVEFCIEEFPDEIK 268 (809)
Q Consensus 192 l~~f~~~~~~~~~~~~~~i~~~~~p~~~~~f~~~~~~~~~~~~~~-~l--~~~~~~~~~~~~llp~f~~~~~~~f~~~l~ 268 (809)
+..|.+++.........++....++..+.+|+.++.......+.. .+ .++.........++|.|..+++..|| .+.
T Consensus 87 l~~~~~rk~~~~l~~~~g~~~~~~~~~~~sf~~~~~~~~~l~~~~l~i~~~di~~g~~~~~~lfp~f~~~~k~~fp-~l~ 165 (700)
T KOG0953|consen 87 LDKFQVRKDWTSLPSVYGFDLPLFPAAFISFRIYCNKSEFLDVDSLHILTNDIRKGAKDIDFLFPFFLRHAKQEFP-ELT 165 (700)
T ss_pred HHHHHHhHHHHhhccccccccccchhhhHHHHHHhcchhccccchhhhhhhhhhcCCCchhhhhhHHHHHHHHHhc-ccc
Confidence 334555554444555566777889999999999987776665542 22 36667777778899999999999999 677
Q ss_pred HHHHHHHhCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeee
Q 003587 269 RFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLL 348 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~ 348 (809)
+..+.....+++.|..|||.+|.+.++.++++|||+||||+-+|+.+...++++|+.|+|.||.++++++++.|++|.++
T Consensus 166 ~~Ddl~~isDLt~P~~WyP~AR~~~RkIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~ 245 (700)
T KOG0953|consen 166 RMDDLKKISDLTNPANWYPEARKIRRKIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLL 245 (700)
T ss_pred cchhhhhhhccCCCcccCchhHhhhheEEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCcccc
Confidence 77777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccc----CcceeeeeeecccCCcccEEEEecccccccccchhHHHHHHhhcccccccccCCchHHHHHHHHhh
Q 003587 349 TGQEKKLVPF----SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICS 424 (809)
Q Consensus 349 ~g~~~~~~~~----~~~i~~tie~lt~~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~ 424 (809)
||++...... +.++.||+||++....+++.||||+|+|.|..+||+|+++++|+.++++|+|++|.+++++++++.
T Consensus 246 TGeE~~~~~~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k 325 (700)
T KOG0953|consen 246 TGEERRFVLDNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILK 325 (700)
T ss_pred ccceeeecCCCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHh
Confidence 9999886654 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEeeccccchhhHhHHHHHHHHHhcCCCCEEEEechhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhh
Q 003587 425 ETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFN 504 (809)
Q Consensus 425 ~~~~~~~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~ 504 (809)
.+++++.+..|+|+.|+.++. .+++.+.+..+|+|||+||++++..+...+++..+.+|+++||+|||+.|.++...|+
T Consensus 326 ~TGd~vev~~YeRl~pL~v~~-~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FN 404 (700)
T KOG0953|consen 326 MTGDDVEVREYERLSPLVVEE-TALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFN 404 (700)
T ss_pred hcCCeeEEEeecccCcceehh-hhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhC
Confidence 999999999999999999887 7889999999999999999999999999999987778999999999999999999999
Q ss_pred cCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHH
Q 003587 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (809)
Q Consensus 505 ~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~ 584 (809)
+|+++++|||||||+|||+|++|++||++++.||+|....|.+.++..|++|||||.|..++.|.+++|..+|...+++.
T Consensus 405 d~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~ 484 (700)
T KOG0953|consen 405 DPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRI 484 (700)
T ss_pred CCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccCCccccCCcchHHHHHHHHHHhcCCCccccccccC
Q 003587 585 LKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCF 664 (809)
Q Consensus 585 l~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~L~~~~~l~l~d~~~~c~ 664 (809)
|..+.+++..++++|+.++++.|+.++++..++.|++.|...++.++.|++|+.++.+.+|.+|++++ |++.|++.||.
T Consensus 485 l~~p~epi~~agl~pt~eqie~fa~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~-L~l~dr~~fc~ 563 (700)
T KOG0953|consen 485 LKRPVEPIKNAGLWPTDEQIELFAYHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIE-LPLKDRYKFCT 563 (700)
T ss_pred HhCCchHHHhccCCccHHHHHHHHHhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCC-cchhhhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCCCCcchHHHHHHHHHHhhccCCceEE-----eecCCCCCCCCchhhHHHHHhhhhhhhHhHHhhccCCCCCCCCHHHH
Q 003587 665 APVNIRDPKAMYHLLRFASSYSKNAPVS-----IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKA 739 (809)
Q Consensus 665 ~P~~~~~~~~~~~~~~~~~~~~~~~~v~-----il~g~~~~~~~~~~~l~~le~~h~~l~~y~wls~rf~~~~f~~~~~~ 739 (809)
+|++..++.+++++++||+.|+.++++. ..+|+|...+++..+|.+||++|++|++|+|||+||| ++|||.+.|
T Consensus 564 aPvnk~~p~v~~~f~kfa~~~s~~~~l~~~~l~~~~~~p~~~p~t~~~L~~LEs~h~il~lYmWlS~Rfp-d~fpd~~~v 642 (700)
T KOG0953|consen 564 APVNKKMPRVCSAFLKFARQYSQNEPLTFLWLKFNLGWPNKIPKTIYELEDLESLHDILDLYMWLSNRFP-DMFPDAESV 642 (700)
T ss_pred CcccccCchHHHHHHHHHHHHhcCCcccHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhhhh-hhccChHHH
Confidence 9999999999999999999999999999 5689999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCchhhhhccCCcccccCCCCCcchhhhHHHHHHhhh
Q 003587 740 EAMATDIAELLGQSLTNANWKPESRQAGKPKLHQQREDGYDRPRSIIKSYENRKR 794 (809)
Q Consensus 740 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (809)
++++..+..+|.+.+.++.|..++...-+-+-..+.+-+++||-++.|. +.+.+
T Consensus 643 rd~~~~ld~ii~egv~~~~k~~~~~e~~~~~g~~~~s~rr~r~~k~p~~-~~~~~ 696 (700)
T KOG0953|consen 643 RDLKKELDEIIQEGVSKLTKLLKAHETFSTGGQSKSSRRRERPAKLPKL-RKRLD 696 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCccccccchhcccccCcccCcch-hhhhh
Confidence 9999999999999999999998877544232223444778888888877 54443
No 2
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.9e-51 Score=444.52 Aligned_cols=362 Identities=17% Similarity=0.222 Sum_probs=290.8
Q ss_pred cccccccccCCCCchhhccccchhh-hcccCChhhHHHHHHHHHHhhcchhhhhhhhhhhcCCCCCCChhHHHHHHhhhc
Q 003587 151 NQSVRFLHLSTRDPVEVFGELRSTE-KGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKK 229 (809)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dw~~~~~~l~~f~~~~~~~~~~~~~~i~~~~~p~~~~~f~~~~~~~ 229 (809)
++......+.++..+..|...||++ .+++|+.+||+++++ + +.+.++|+.+|.|+++|.+..
T Consensus 189 ~~~~~~qk~~k~~~k~~~DdrhW~~k~l~Em~~rdwri~re-------d-------ynis~kg~~lpnplrnwEE~~--- 251 (673)
T KOG0333|consen 189 QEEELLQKVCKKEAKSGWDDRHWSEKVLAEMTERDWRIFRE-------D-------YNISIKGGRLPNPLRNWEESG--- 251 (673)
T ss_pred hHHHHHHHhhhhhhhccccccchhhhhHHhcCCccceeeec-------c-------eeeeecCCCCCccccChhhcC---
Confidence 3444444555566677899999998 899999999999998 3 667789999999999999873
Q ss_pred CCChhhhhHhhcCCChhhhhhhhhhhHhhhhccCcHHHHHHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChH
Q 003587 230 CPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGK 307 (809)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~llp~f~~~~~~~f~~~l~~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGK 307 (809)
||.. +++++...||..|+| .++++..++.+|+|++|.|||||
T Consensus 252 ---------------------------------~P~e---~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGk 295 (673)
T KOG0333|consen 252 ---------------------------------FPLE---LLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGK 295 (673)
T ss_pred ---------------------------------CCHH---HHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCc
Confidence 2222 235788999999999 23333489999999999999999
Q ss_pred HHHHHHHHH----------------cCCcEEEEcccHhHHHHHHHHHHhcCCce-----eeeecccccccccCcceeeee
Q 003587 308 TYNALQRFM----------------EAKKGIYCSPLRLLAMEVFDKVNALGVYC-----SLLTGQEKKLVPFSNHIACTV 366 (809)
Q Consensus 308 Tl~~L~~L~----------------~~~~~LvlsPtR~La~Q~~~~l~~~g~~~-----~l~~g~~~~~~~~~~~i~~ti 366 (809)
|++++.+|+ .++.++|++|||+||+||.+.-.+++... .+++|.....+.+.....|.+
T Consensus 296 taaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gcei 375 (673)
T KOG0333|consen 296 TAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEI 375 (673)
T ss_pred cccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhcccee
Confidence 999766654 46789999999999999999999986553 455666655555566677899
Q ss_pred eecccCCc-------------ccEEEEecccccccccchhHHHHHHhhcccc-------------------------ccc
Q 003587 367 EMVSTDEM-------------YDVAVIDEIQMMSDACRGYAWTRALLGLMAD-------------------------EIH 408 (809)
Q Consensus 367 e~lt~~rl-------------v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~-------------------------~i~ 408 (809)
.+++|+++ +.+||+|||++|.|+||.++...+|..++.. +++
T Consensus 376 viatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT 455 (673)
T KOG0333|consen 376 VIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQT 455 (673)
T ss_pred eecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEE
Confidence 99999987 6889999999999999999999999877642 456
Q ss_pred ccCCchHHHHHHHHhhhcCCceEEee---ccccch----------hhHhHHHHHHHHHhcCCCCEEEEec-hhHHHHHHH
Q 003587 409 LCGDPSVLDVVRKICSETGDELHEQH---YERFKP----------LVVEAKTLLGDLRNVRSGDCVVAFS-RREIFEVKM 474 (809)
Q Consensus 409 l~~s~~~~~li~~l~~~~~~~~~~~~---~~r~~~----------l~~~~k~ll~~l~~~~~g~~II~fs-rk~~~~l~~ 474 (809)
+|++++..+.+..|+.......+... ..+..+ .....+.|++++.+.....+|||.+ ++.|+.+++
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHH
Confidence 67777777777666655433222111 111111 1112457888888776677777775 688999999
Q ss_pred HHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHH
Q 003587 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQ 553 (809)
Q Consensus 475 ~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Q 553 (809)
.|.+. |++|..|||+.++++|+.+++.|+ .|..+||||||++||||||| |.+|||||+ +.++++|.|
T Consensus 536 ~LeK~-g~~~~tlHg~k~qeQRe~aL~~fr--~~t~dIlVaTDvAgRGIDIpnVSlVinydm---------aksieDYtH 603 (673)
T KOG0333|consen 536 ILEKA-GYKVTTLHGGKSQEQRENALADFR--EGTGDILVATDVAGRGIDIPNVSLVINYDM---------AKSIEDYTH 603 (673)
T ss_pred HHhhc-cceEEEeeCCccHHHHHHHHHHHH--hcCCCEEEEecccccCCCCCccceeeecch---------hhhHHHHHH
Confidence 99986 999999999999999999999999 89999999999999999998 999999999 779999999
Q ss_pred HHcccCCCCCCCCceEEEEEecccHHH
Q 003587 554 IAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 554 r~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
|||||||+|+ .|++++|+++++..
T Consensus 604 RIGRTgRAGk---~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 604 RIGRTGRAGK---SGTAISFLTPADTA 627 (673)
T ss_pred Hhcccccccc---CceeEEEeccchhH
Confidence 9999999999 89999999877633
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.5e-50 Score=480.66 Aligned_cols=419 Identities=17% Similarity=0.153 Sum_probs=301.6
Q ss_pred hhhccCcHH--HHHHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHH-HHHHHHcCCcEEEEcccHhHHH
Q 003587 258 FCIEEFPDE--IKRFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAM 332 (809)
Q Consensus 258 ~~~~~f~~~--l~~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~-~L~~L~~~~~~LvlsPtR~La~ 332 (809)
|....||-. +..+ ..+..||..+++ ...+..++.|+|+++++|||+|||+| +|++|...+.+|||+||++||.
T Consensus 437 W~~~~fpw~~~L~~~--lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmq 514 (1195)
T PLN03137 437 WSSRNFPWTKKLEVN--NKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 514 (1195)
T ss_pred ccccCCCchHHHHHH--HHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHH
Confidence 555566632 3222 233579988887 45566689999999999999999999 5666778889999999999999
Q ss_pred HHHHHHHhcCCceeeeeccccccc------------ccCcceeeeeeecccC-------------CcccEEEEecccccc
Q 003587 333 EVFDKVNALGVYCSLLTGQEKKLV------------PFSNHIACTVEMVSTD-------------EMYDVAVIDEIQMMS 387 (809)
Q Consensus 333 Q~~~~l~~~g~~~~l~~g~~~~~~------------~~~~~i~~tie~lt~~-------------rlv~~vVIDEAH~i~ 387 (809)
+|+..+...|+.+..++|...... .....+++|++.+... ..+.+||||||||++
T Consensus 515 DQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 515 DQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 999999999999887776532110 1234566777765321 127889999999999
Q ss_pred cccchhHHHHHHhhcc-------cc-cccccCCc--hHHHHHHHHhhhcCCceEEeeccccchh------hH-hHHHHHH
Q 003587 388 DACRGYAWTRALLGLM-------AD-EIHLCGDP--SVLDVVRKICSETGDELHEQHYERFKPL------VV-EAKTLLG 450 (809)
Q Consensus 388 d~~~g~~~~~ill~l~-------~~-~i~l~~s~--~~~~li~~l~~~~~~~~~~~~~~r~~~l------~~-~~k~ll~ 450 (809)
+ ||++|+..+..+. .. .+.+++++ .+...+..........++...+.|.+.. .. ....+..
T Consensus 595 q--WGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~ 672 (1195)
T PLN03137 595 Q--WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDK 672 (1195)
T ss_pred h--cccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHH
Confidence 8 7888877664431 11 12233333 2333333333222233344444433210 00 0123444
Q ss_pred HHHhcC-CCCEEEE-echhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-c
Q 003587 451 DLRNVR-SGDCVVA-FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-I 527 (809)
Q Consensus 451 ~l~~~~-~g~~II~-fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V 527 (809)
.+.... .+..||| .++++++.++..|.+. |+.+..|||+|++++|..+++.|. +|+++|||||+++|||||+| |
T Consensus 673 ~I~~~~~~esgIIYC~SRke~E~LAe~L~~~-Gika~~YHAGLs~eeR~~vqe~F~--~Gei~VLVATdAFGMGIDkPDV 749 (1195)
T PLN03137 673 FIKENHFDECGIIYCLSRMDCEKVAERLQEF-GHKAAFYHGSMDPAQRAFVQKQWS--KDEINIICATVAFGMGINKPDV 749 (1195)
T ss_pred HHHhcccCCCceeEeCchhHHHHHHHHHHHC-CCCeeeeeCCCCHHHHHHHHHHHh--cCCCcEEEEechhhcCCCccCC
Confidence 444332 2333444 4789999999999875 999999999999999999999999 89999999999999999998 9
Q ss_pred cEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc-cHHHHHHHHcCCchHH--------------
Q 003587 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD-DLDYLIECLKQPFEVV-------------- 592 (809)
Q Consensus 528 ~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~-d~~~l~~~l~~~~~~~-------------- 592 (809)
++||||++ |.|++.|+||+|||||+|. .|.|++||+. |...+..++.+...+.
T Consensus 750 R~VIHydl---------PkSiEsYyQriGRAGRDG~---~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~ 817 (1195)
T PLN03137 750 RFVIHHSL---------PKSIEGYHQECGRAGRDGQ---RSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSG 817 (1195)
T ss_pred cEEEEcCC---------CCCHHHHHhhhcccCCCCC---CceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhH
Confidence 99999999 8999999999999999999 8999999975 4444455554321110
Q ss_pred -HHhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccCCccccCCcchHHHHHHHHHHhcCCCccccccccCCCCCC--
Q 003587 593 -KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNI-- 669 (809)
Q Consensus 593 -~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~L~~~~~l~l~d~~~~c~~P~~~-- 669 (809)
.+......+..|..||+....|++..||.||||.+... .|+ ..||+|..|...
T Consensus 818 ~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~----~C~--------------------~~CDnC~~~~~~~~ 873 (1195)
T PLN03137 818 RILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDST----NCK--------------------KTCDNCSSSKSLID 873 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCcc----CCC--------------------CCCCCCCCCCcccc
Confidence 00111245778999999866899999999999975321 465 149999988764
Q ss_pred cc-----hHHHHHHHHHHhhccCCceEEeecCCCCCCCCchhhHHHHHhhhhhhhHhHHhhcc
Q 003587 670 RD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQ 727 (809)
Q Consensus 670 ~~-----~~~~~~~~~~~~~~~~~~~v~il~g~~~~~~~~~~~l~~le~~h~~l~~y~wls~r 727 (809)
.| +++++++.+.+++||.++.+++++|.. .+++. +..|+.|++||-+...
T Consensus 874 ~D~T~~Aq~~ls~V~~~~~~fg~~~iidvlrGs~------~~~i~--~~~~d~l~~~G~gk~~ 928 (1195)
T PLN03137 874 KDVTEIARQLVELVKLTGERFSSAHILEVYRGSL------NQYVK--KHRHETLSLHGAGKHL 928 (1195)
T ss_pred cccHHHHHHHHHHHHHhccCcchhheehhhhccc------cHHHH--HhCcccccccCccccC
Confidence 23 789999999999999999999999983 35544 7899999999987644
No 4
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-50 Score=458.01 Aligned_cols=391 Identities=19% Similarity=0.225 Sum_probs=304.9
Q ss_pred cchhHHhhCCCeEEEEcCCCChHHHH-HHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccc------
Q 003587 285 WFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP------ 357 (809)
Q Consensus 285 ~~p~~~~l~grdviv~apTGSGKTl~-~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~------ 357 (809)
+..|..+++|+|+++++|||+|||+| ++++++..|.+|||+|+.+||.+|++.++..|+.+..+++.......
T Consensus 23 ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~ 102 (590)
T COG0514 23 QEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQ 102 (590)
T ss_pred HHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHH
Confidence 44556689999999999999999999 78999999999999999999999999999999998887776433221
Q ss_pred ----cCcceeeeeeecccCCc--------ccEEEEecccccccccchhHHHHHHhhcccc--------cccc--cCCchH
Q 003587 358 ----FSNHIACTVEMVSTDEM--------YDVAVIDEIQMMSDACRGYAWTRALLGLMAD--------EIHL--CGDPSV 415 (809)
Q Consensus 358 ----~~~~i~~tie~lt~~rl--------v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~--------~i~l--~~s~~~ 415 (809)
.-..++.+||.+..... +.++|||||||+++ ||++|++.|..+... .+.+ ++++.+
T Consensus 103 l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSq--WGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v 180 (590)
T COG0514 103 LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQ--WGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRV 180 (590)
T ss_pred HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhh--cCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHH
Confidence 11233444544433322 89999999999998 899999988665432 2334 455556
Q ss_pred HHHHHHHhhhcCCceEEeeccccchhhHh------HHHHHHHHH---hcCCC-CEEEEechhHHHHHHHHHHHhcCCeEE
Q 003587 416 LDVVRKICSETGDELHEQHYERFKPLVVE------AKTLLGDLR---NVRSG-DCVVAFSRREIFEVKMAIEKHTNHHCC 485 (809)
Q Consensus 416 ~~li~~l~~~~~~~~~~~~~~r~~~l~~~------~k~ll~~l~---~~~~g-~~II~fsrk~~~~l~~~L~~~~g~~v~ 485 (809)
...+...........+...+.|.+-...- ..++. .+. ....+ .+|+|.||+.+++++.+|... |+++.
T Consensus 181 ~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~-g~~a~ 258 (590)
T COG0514 181 RDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN-GISAG 258 (590)
T ss_pred HHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC-CCceE
Confidence 66665555555556788888876643211 12232 333 23333 466666999999999999987 99999
Q ss_pred EEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCC
Q 003587 486 VIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564 (809)
Q Consensus 486 ~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~ 564 (809)
.|||||+.++|..+.++|. +++++|+|||.|+|||||.| |++|||||+ |.|+++|+|.+|||||+|.
T Consensus 259 ~YHaGl~~~eR~~~q~~f~--~~~~~iiVAT~AFGMGIdKpdVRfViH~~l---------P~s~EsYyQE~GRAGRDG~- 326 (590)
T COG0514 259 AYHAGLSNEERERVQQAFL--NDEIKVMVATNAFGMGIDKPDVRFVIHYDL---------PGSIESYYQETGRAGRDGL- 326 (590)
T ss_pred EecCCCCHHHHHHHHHHHh--cCCCcEEEEeccccCccCCCCceEEEEecC---------CCCHHHHHHHHhhccCCCC-
Confidence 9999999999999999999 89999999999999999998 999999999 9999999999999999999
Q ss_pred CCceEEEEEecc-cHHHHHHHHcCCchH-HHHhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccCCccccCCcchHH
Q 003587 565 YPDGLTTTLNLD-DLDYLIECLKQPFEV-VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIK 642 (809)
Q Consensus 565 ~~~G~~i~~~~~-d~~~l~~~l~~~~~~-~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~ 642 (809)
...|++||++ |......++++..+. ..+......+.+|..||+... |++..|+.||++. ... .|.
T Consensus 327 --~a~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e~~~-crr~~ll~yfge~-~~~----~c~----- 393 (590)
T COG0514 327 --PAEAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCETQT-CRRLVLLKYFGED-EPE----PCG----- 393 (590)
T ss_pred --cceEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccc-chHHHHHHhcCcc-ccc----ccc-----
Confidence 8999999985 545555666653221 122222356888999999844 9999999999987 221 566
Q ss_pred HHHHHHHHhcCCCccccccccCCCCCCcc-----hHHHHHHHHHHhhccCCceEEeecCCCCCCCCchhhHHHHHhhhhh
Q 003587 643 KVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQV 717 (809)
Q Consensus 643 ~~a~~L~~~~~l~l~d~~~~c~~P~~~~~-----~~~~~~~~~~~~~~~~~~~v~il~g~~~~~~~~~~~l~~le~~h~~ 717 (809)
+|++|..|....| ++.++++.+..+++|.++.++++.|... .+ ..+..|+.
T Consensus 394 ----------------~c~~c~~~~~~~d~t~~a~~~ls~~~r~~~~~~~~~~~~~l~g~~~------~~--~~~~~~~~ 449 (590)
T COG0514 394 ----------------NCDNCLDTPKQFDGTIEAQKVLSCIYRMGQRFGVGYVIDVLRGSKN------LK--IRLLGHEK 449 (590)
T ss_pred ----------------CCCcccCcchhcchHHHHHHHHHhHhhhhhhhhHHHHHHHHhcccc------hh--hhhccccc
Confidence 6999999998877 6889999999999999999999999832 33 34788999
Q ss_pred hhHhHHhhccC
Q 003587 718 LSMYLWLSHQF 728 (809)
Q Consensus 718 l~~y~wls~rf 728 (809)
+++||-....=
T Consensus 450 l~~~G~~k~~~ 460 (590)
T COG0514 450 LSTYGIGKDLS 460 (590)
T ss_pred ccccCCCcccC
Confidence 99998775543
No 5
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-47 Score=451.51 Aligned_cols=399 Identities=18% Similarity=0.213 Sum_probs=293.2
Q ss_pred hCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHH-HHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccc
Q 003587 276 SADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE 352 (809)
Q Consensus 276 ~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~-~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~ 352 (809)
..||..|++ ...+..+++|+|+++++|||||||++ +++++...+.+||++||++|+.|+++.++..|+.+..+++..
T Consensus 20 ~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~ 99 (607)
T PRK11057 20 TFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQ 99 (607)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 469988887 34566689999999999999999999 466677888999999999999999999999999887776653
Q ss_pred ccccc----------cCcceeeeeeecccC--------CcccEEEEecccccccccchhHHHHHHhhcc-------c-cc
Q 003587 353 KKLVP----------FSNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGLM-------A-DE 406 (809)
Q Consensus 353 ~~~~~----------~~~~i~~tie~lt~~--------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~-------~-~~ 406 (809)
..... ....+++|++.+... ..++++||||||++++ ||++++..+..+. . ..
T Consensus 100 ~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~--~G~~fr~~y~~L~~l~~~~p~~~~ 177 (607)
T PRK11057 100 TREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ--WGHDFRPEYAALGQLRQRFPTLPF 177 (607)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc--ccCcccHHHHHHHHHHHhCCCCcE
Confidence 32110 122344565544321 1278999999999997 6777665543321 1 12
Q ss_pred ccccCCchH--HHHHHHHhhhcCCceEEeeccccchh------hHhHHHHHHHHHhcCCCCEEEEe-chhHHHHHHHHHH
Q 003587 407 IHLCGDPSV--LDVVRKICSETGDELHEQHYERFKPL------VVEAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIE 477 (809)
Q Consensus 407 i~l~~s~~~--~~li~~l~~~~~~~~~~~~~~r~~~l------~~~~k~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~ 477 (809)
+.++++++. ...+...............+.+.+.. ......++..+.....+..|||+ ++++++.++..|.
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~ 257 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQ 257 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 233344332 11121221111222222333332211 11123455555555555666666 6799999999998
Q ss_pred HhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHc
Q 003587 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556 (809)
Q Consensus 478 ~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~G 556 (809)
+. |+.+..|||+|++++|..+++.|+ .|+++|||||++++||||+| |++|||+|+ |.|.++|+||+|
T Consensus 258 ~~-g~~v~~~Ha~l~~~~R~~i~~~F~--~g~~~VLVaT~a~~~GIDip~V~~VI~~d~---------P~s~~~y~Qr~G 325 (607)
T PRK11057 258 SR-GISAAAYHAGLDNDVRADVQEAFQ--RDDLQIVVATVAFGMGINKPNVRFVVHFDI---------PRNIESYYQETG 325 (607)
T ss_pred hC-CCCEEEecCCCCHHHHHHHHHHHH--CCCCCEEEEechhhccCCCCCcCEEEEeCC---------CCCHHHHHHHhh
Confidence 75 999999999999999999999999 89999999999999999998 999999999 899999999999
Q ss_pred ccCCCCCCCCceEEEEEeccc-HHHHHHHHcCCchHHHHhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccCCcccc
Q 003587 557 RAGRRGSIYPDGLTTTLNLDD-LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635 (809)
Q Consensus 557 RAGR~G~~~~~G~~i~~~~~d-~~~l~~~l~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~ 635 (809)
||||+|. .|.|++|++.. ...+..++........+......+..|..||+. ..|++..||+||+|... ..
T Consensus 326 RaGR~G~---~~~~ill~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~Crr~~~l~yf~e~~~-----~~ 396 (607)
T PRK11057 326 RAGRDGL---PAEAMLFYDPADMAWLRRCLEEKPAGQQQDIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGRQ-----EP 396 (607)
T ss_pred hccCCCC---CceEEEEeCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHhCCCCC-----CC
Confidence 9999998 79999999754 445556665543332222222356789999987 67999999999998642 14
Q ss_pred CCcchHHHHHHHHHHhcCCCccccccccCCCCCCcc-----hHHHHHHHHHHhhccCCceEEeecCCCCCCCCchhhHHH
Q 003587 636 CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLD 710 (809)
Q Consensus 636 c~~~~~~~~a~~L~~~~~l~l~d~~~~c~~P~~~~~-----~~~~~~~~~~~~~~~~~~~v~il~g~~~~~~~~~~~l~~ 710 (809)
|+ +||+|..|....| +++++++.+..++||.+..+++++|.. .+++.
T Consensus 397 c~---------------------~cd~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~- 448 (607)
T PRK11057 397 CG---------------------NCDICLDPPKQYDGLEDAQKALSCIYRVNQRFGMGYVVEVLRGAN------NQRIR- 448 (607)
T ss_pred CC---------------------CCCCCCCcccccccHHHHHHHHHHHHHhcCCCCcceeeeeeeccC------cchhh-
Confidence 66 6999999876544 678999999999999999999999983 34543
Q ss_pred HHhhhhhhhHhHHhhc
Q 003587 711 LETKHQVLSMYLWLSH 726 (809)
Q Consensus 711 le~~h~~l~~y~wls~ 726 (809)
+..|+.+++||-++.
T Consensus 449 -~~~~~~~~~~g~~~~ 463 (607)
T PRK11057 449 -DYGHDKLKVYGIGRD 463 (607)
T ss_pred -hcccccCCccCcCCc
Confidence 789999999998875
No 6
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-47 Score=440.14 Aligned_cols=404 Identities=20% Similarity=0.213 Sum_probs=285.2
Q ss_pred HhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHH-HHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecc
Q 003587 275 ESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNA-LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQ 351 (809)
Q Consensus 275 ~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~-L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~ 351 (809)
+..||..|+| ...++.+++|+|+++++|||||||+++ ++++..++.+||++||++|+.|+++.+...|+.+..+++.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~ 84 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFLNSS 84 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3578999988 446667899999999999999999995 5666678899999999999999999999999998888776
Q ss_pred cccc----------cccCcceeeeeeecccC----------CcccEEEEecccccccccchhHHHHHHhhc-------cc
Q 003587 352 EKKL----------VPFSNHIACTVEMVSTD----------EMYDVAVIDEIQMMSDACRGYAWTRALLGL-------MA 404 (809)
Q Consensus 352 ~~~~----------~~~~~~i~~tie~lt~~----------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l-------~~ 404 (809)
.... ......+++|++.+... ..++++||||||++++ ||++++..+..+ +.
T Consensus 85 ~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~ 162 (470)
T TIGR00614 85 QSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ--WGHDFRPDYKALGSLKQKFPN 162 (470)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc--cccccHHHHHHHHHHHHHcCC
Confidence 5432 11234566777654321 2279999999999997 677776655332 11
Q ss_pred c-cccccCCch--HHHHHHHHhhhcCCceEEeeccccch------hh-HhHHHHHHHHHhcCCCCE-EEEe-chhHHHHH
Q 003587 405 D-EIHLCGDPS--VLDVVRKICSETGDELHEQHYERFKP------LV-VEAKTLLGDLRNVRSGDC-VVAF-SRREIFEV 472 (809)
Q Consensus 405 ~-~i~l~~s~~--~~~li~~l~~~~~~~~~~~~~~r~~~------l~-~~~k~ll~~l~~~~~g~~-II~f-srk~~~~l 472 (809)
. .+.++++++ +...+..........++...+.+.+. .. .....++..+....+++. |||+ +++.++.+
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~l 242 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQV 242 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHH
Confidence 1 222333332 22222222211122222222322211 00 111245555554444544 5555 68999999
Q ss_pred HHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHH
Q 003587 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQV 551 (809)
Q Consensus 473 ~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y 551 (809)
+..|.+. |+.+..|||+|++++|..+++.|+ +|+++|||||++++||||+| |++|||+++ |.|+++|
T Consensus 243 a~~L~~~-g~~~~~~H~~l~~~eR~~i~~~F~--~g~~~vLVaT~~~~~GID~p~V~~VI~~~~---------P~s~~~y 310 (470)
T TIGR00614 243 TASLQNL-GIAAGAYHAGLEISARDDVHHKFQ--RDEIQVVVATVAFGMGINKPDVRFVIHYSL---------PKSMESY 310 (470)
T ss_pred HHHHHhc-CCCeeEeeCCCCHHHHHHHHHHHH--cCCCcEEEEechhhccCCcccceEEEEeCC---------CCCHHHH
Confidence 9999875 999999999999999999999999 89999999999999999998 999999999 8899999
Q ss_pred HHHHcccCCCCCCCCceEEEEEeccc-HHHHHHHHcCCchHHHHhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccC
Q 003587 552 KQIAGRAGRRGSIYPDGLTTTLNLDD-LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630 (809)
Q Consensus 552 ~Qr~GRAGR~G~~~~~G~~i~~~~~d-~~~l~~~l~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~ 630 (809)
+||+|||||+|. .|.|++|+++. ...+..++........+.......+.|..|+.. ..|++..|++||++.....
T Consensus 311 ~Qr~GRaGR~G~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~crr~~l~~~f~~~~~~~ 386 (470)
T TIGR00614 311 YQESGRAGRDGL---PSECHLFYAPADINRLRRLLMEEPDGQQRTYKLKLYEMMEYCLNS-STCRRLILLSHFGEKQLNK 386 (470)
T ss_pred HhhhcCcCCCCC---CceEEEEechhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcc-ccCHHHHHHHHcCCccccc
Confidence 999999999999 89999999754 445555555432222211111234555555544 7899999999999853210
Q ss_pred -----CccccCCcchHHHHHHHHHHhcCCCccccccccCC------CCCCcc-----hHHHHHHHHHHhhccCCceEEee
Q 003587 631 -----GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFA------PVNIRD-----PKAMYHLLRFASSYSKNAPVSIA 694 (809)
Q Consensus 631 -----~~~~~c~~~~~~~~a~~L~~~~~l~l~d~~~~c~~------P~~~~~-----~~~~~~~~~~~~~~~~~~~v~il 694 (809)
.....|+ +|++|.. +....| +++++++.+..+++|.+..++++
T Consensus 387 ~~~~~~~~~~C~---------------------~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (470)
T TIGR00614 387 SFGIMGTEKCCD---------------------NCCKRLDYKTKDVTDKVYDFGPQAQKALSAVGRLNQKFGMGYPIDFL 445 (470)
T ss_pred ccccccCCCCCC---------------------CCCCccccccCCCChhHhhHHHHHHHHHHHHHHhcCCCchhhhHHHH
Confidence 0011233 5666655 333333 57888999999999999999999
Q ss_pred cCCCCCCCCchhhHHHHHhhhhhhhHhHHhh
Q 003587 695 MGMPKGSAKNDAELLDLETKHQVLSMYLWLS 725 (809)
Q Consensus 695 ~g~~~~~~~~~~~l~~le~~h~~l~~y~wls 725 (809)
+|.. .+++. +.+|+.+++||-+.
T Consensus 446 ~g~~------~~~~~--~~~~~~~~~~g~~~ 468 (470)
T TIGR00614 446 RGSN------SQKLR--DRGFRKHSLYGRGK 468 (470)
T ss_pred hCCc------chhHH--hcCCCcCCccCCCC
Confidence 9973 35554 88999999998653
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-47 Score=426.29 Aligned_cols=299 Identities=19% Similarity=0.213 Sum_probs=239.4
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH----c---------CCcEEEEcccHhHHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----E---------AKKGIYCSPLRLLAMEV 334 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~---------~~~~LvlsPtR~La~Q~ 334 (809)
++.+++..||+.||| ++.++.+|.|+|++++|.||||||++|+.+++ . ++.+||++||||||.|+
T Consensus 102 ~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV 181 (519)
T KOG0331|consen 102 LMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQV 181 (519)
T ss_pred HHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHH
Confidence 357889999999999 44555589999999999999999999665543 2 56899999999999999
Q ss_pred HHHHHhcCCcee-----eeecccccccccCcceeeeeeecccCCc-------------ccEEEEecccccccccchhHHH
Q 003587 335 FDKVNALGVYCS-----LLTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSDACRGYAWT 396 (809)
Q Consensus 335 ~~~l~~~g~~~~-----l~~g~~~~~~~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~~~g~~~~ 396 (809)
.+.+.+++..+. +++|...+.+.....-.+.+.++||+|+ +.++|+||||+|+|+||+.+++
T Consensus 182 ~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~ 261 (519)
T KOG0331|consen 182 QAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIR 261 (519)
T ss_pred HHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHH
Confidence 999999865543 4444444433333334467778888876 7999999999999999999999
Q ss_pred HHHhhc-ccccccccCCchHHHHHHHHhhhcCCceEEeeccccch---------------hhHhHH---HHHHHHHhcCC
Q 003587 397 RALLGL-MADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKP---------------LVVEAK---TLLGDLRNVRS 457 (809)
Q Consensus 397 ~ill~l-~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~r~~~---------------l~~~~k---~ll~~l~~~~~ 457 (809)
.++..+ ++.+++++.++++...++.++.......+......... ...... .++..+.....
T Consensus 262 ~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~ 341 (519)
T KOG0331|consen 262 KILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSE 341 (519)
T ss_pred HHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCC
Confidence 999999 55668999999999888888876655433332221100 000111 23333333456
Q ss_pred CCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCC
Q 003587 458 GDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (809)
Q Consensus 458 g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~ 535 (809)
+++|||+ +++.|++++..+... ++++..|||+++|.+|+.+++.|+ +|+..||||||+++|||||| |++|||||+
T Consensus 342 ~KvIIFc~tkr~~~~l~~~l~~~-~~~a~~iHGd~sQ~eR~~~L~~Fr--eG~~~vLVATdVAaRGLDi~dV~lVInydf 418 (519)
T KOG0331|consen 342 GKVIIFCETKRTCDELARNLRRK-GWPAVAIHGDKSQSERDWVLKGFR--EGKSPVLVATDVAARGLDVPDVDLVINYDF 418 (519)
T ss_pred CcEEEEecchhhHHHHHHHHHhc-CcceeeecccccHHHHHHHHHhcc--cCCcceEEEcccccccCCCccccEEEeCCC
Confidence 6778877 679999999999875 799999999999999999999999 89999999999999999997 999999999
Q ss_pred CCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 536 SKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 536 ~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
|.++++|+||+|||||+|. .|.+++|++.+...+..
T Consensus 419 ---------P~~vEdYVHRiGRTGRa~~---~G~A~tfft~~~~~~a~ 454 (519)
T KOG0331|consen 419 ---------PNNVEDYVHRIGRTGRAGK---KGTAITFFTSDNAKLAR 454 (519)
T ss_pred ---------CCCHHHHHhhcCccccCCC---CceEEEEEeHHHHHHHH
Confidence 9999999999999999999 89999999877655544
No 8
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5e-46 Score=439.57 Aligned_cols=401 Identities=19% Similarity=0.216 Sum_probs=294.5
Q ss_pred hCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHH-HHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccc
Q 003587 276 SADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNA-LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE 352 (809)
Q Consensus 276 ~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~-L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~ 352 (809)
..||..+.+ ...+..+++|+|+++++|||+|||+|+ ++++...+.+||++|+++|+.|+++.++.+|+.+..+++..
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~ 87 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTL 87 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 478888877 445666899999999999999999994 56677888899999999999999999999999988777654
Q ss_pred cccc----------ccCcceeeeeeecccCC--------cccEEEEecccccccccchhHHHHHHhhcc-------cc-c
Q 003587 353 KKLV----------PFSNHIACTVEMVSTDE--------MYDVAVIDEIQMMSDACRGYAWTRALLGLM-------AD-E 406 (809)
Q Consensus 353 ~~~~----------~~~~~i~~tie~lt~~r--------lv~~vVIDEAH~i~d~~~g~~~~~ill~l~-------~~-~ 406 (809)
.... .....+++|++.+.... .++++||||||++++ ||++++..+..+. .. .
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~--~g~~frp~y~~l~~l~~~~~~~~v 165 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQ--WGHDFRPEYQRLGSLAERFPQVPR 165 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccc--ccCccHHHHHHHHHHHHhCCCCCE
Confidence 3211 11234456666553321 279999999999997 7888776654332 11 2
Q ss_pred ccccCCch--HHHHHHHHhhhcCCceEEeeccccchh------hHhHHHHHHHHHhcCCCCEEEEe-chhHHHHHHHHHH
Q 003587 407 IHLCGDPS--VLDVVRKICSETGDELHEQHYERFKPL------VVEAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIE 477 (809)
Q Consensus 407 i~l~~s~~--~~~li~~l~~~~~~~~~~~~~~r~~~l------~~~~k~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~ 477 (809)
+.++++++ +...+...........+...+.+.+.. ......+...+.....+..|||+ +++.++.++..|.
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~ 245 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLE 245 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 23333332 233233222222222333334332211 11223556666655545556655 6899999999998
Q ss_pred HhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHc
Q 003587 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556 (809)
Q Consensus 478 ~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~G 556 (809)
.. |+.+..|||+|++++|..+++.|. +|+++|||||++++||||+| |++|||+++ |.|+++|+|++|
T Consensus 246 ~~-g~~~~~~H~~l~~~~R~~i~~~F~--~g~~~vlVaT~a~~~GID~p~v~~VI~~~~---------p~s~~~y~Q~~G 313 (591)
T TIGR01389 246 SQ-GISALAYHAGLSNKVRAENQEDFL--YDDVKVMVATNAFGMGIDKPNVRFVIHYDM---------PGNLESYYQEAG 313 (591)
T ss_pred hC-CCCEEEEECCCCHHHHHHHHHHHH--cCCCcEEEEechhhccCcCCCCCEEEEcCC---------CCCHHHHhhhhc
Confidence 75 999999999999999999999999 89999999999999999998 999999999 899999999999
Q ss_pred ccCCCCCCCCceEEEEEecccH-HHHHHHHcCCchHHH-HhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccCCccc
Q 003587 557 RAGRRGSIYPDGLTTTLNLDDL-DYLIECLKQPFEVVK-KVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF 634 (809)
Q Consensus 557 RAGR~G~~~~~G~~i~~~~~d~-~~l~~~l~~~~~~~~-~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~ 634 (809)
||||+|. .|.|++||+..+ ..+..++....+... +......+..|..||.. ..|++..++.||++... .
T Consensus 314 RaGR~G~---~~~~il~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~c~r~~~~~~f~~~~~-----~ 384 (591)
T TIGR01389 314 RAGRDGL---PAEAILLYSPADIALLKRRIEQSEADDDYKQIEREKLRAMIAYCET-QTCRRAYILRYFGENEV-----E 384 (591)
T ss_pred cccCCCC---CceEEEecCHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHcc-cccHhHHHHHhcCCCCC-----C
Confidence 9999998 799999997554 444556654322211 11112456778899987 68999999999998531 2
Q ss_pred cCCcchHHHHHHHHHHhcCCCccccccccCCCCCCcc-----hHHHHHHHHHHhhccCCceEEeecCCCCCCCCchhhHH
Q 003587 635 LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELL 709 (809)
Q Consensus 635 ~c~~~~~~~~a~~L~~~~~l~l~d~~~~c~~P~~~~~-----~~~~~~~~~~~~~~~~~~~v~il~g~~~~~~~~~~~l~ 709 (809)
.|+ .||+|..|....| .++++++.++.+.++.+..+++++|.. .+.+.
T Consensus 385 ~c~---------------------~cd~c~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~ 437 (591)
T TIGR01389 385 PCG---------------------NCDNCLDPPKSYDATVEAQKALSCVYRMGQRFGVGYIIEVLRGSK------NDKIL 437 (591)
T ss_pred CCC---------------------CCCCCCCCCceeehHHHHHHHHHHHHHhcCCCchhHhHHHHhCcc------chhHH
Confidence 465 6999998876655 678899999999999999999999873 34443
Q ss_pred HHHhhhhhhhHhHHhhccCC
Q 003587 710 DLETKHQVLSMYLWLSHQFK 729 (809)
Q Consensus 710 ~le~~h~~l~~y~wls~rf~ 729 (809)
+..|+.++.||-++ .|+
T Consensus 438 --~~~~~~~~~~g~~~-~~~ 454 (591)
T TIGR01389 438 --QKGHDQLSTYGIGK-DYT 454 (591)
T ss_pred --hcCcccCCccCcCC-CCC
Confidence 66799999999776 454
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=374.77 Aligned_cols=291 Identities=18% Similarity=0.187 Sum_probs=226.7
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH----cC---CcEEEEcccHhHHHHHHHHHHh
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EA---KKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~~---~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
+.+++...||..||+ ...++.++.|+|||+.|+||||||.+|+.|++ .. ..++|++||||||.||.+.+..
T Consensus 72 L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~ 151 (476)
T KOG0330|consen 72 LLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA 151 (476)
T ss_pred HHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH
Confidence 457889999999999 33444589999999999999999999766654 33 4789999999999999999999
Q ss_pred cCCcee----eeecc-ccccc----ccCcceeeeeeecccCCc--------------ccEEEEecccccccccchhHHHH
Q 003587 341 LGVYCS----LLTGQ-EKKLV----PFSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSDACRGYAWTR 397 (809)
Q Consensus 341 ~g~~~~----l~~g~-~~~~~----~~~~~i~~tie~lt~~rl--------------v~~vVIDEAH~i~d~~~g~~~~~ 397 (809)
+|...+ ++.|. ....+ ...+++ .++||+++ +.++|+||||+++|+.|+..+..
T Consensus 152 Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhi----lVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 152 LGSGIGLRVAVLVGGMDMMLQANQLSKKPHI----LVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred hccccCeEEEEEecCchHHHHHHHhhcCCCE----EEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 865543 33333 22211 123333 44666665 78999999999999999999999
Q ss_pred HHhhcccccccccCCchHHHHHHHHhhhcCCceEEe--------------eccccchhhHhHHHHHHHHHhcCCCCEEEE
Q 003587 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQ--------------HYERFKPLVVEAKTLLGDLRNVRSGDCVVA 463 (809)
Q Consensus 398 ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~--------------~~~r~~~l~~~~k~ll~~l~~~~~g~~II~ 463 (809)
++..++..++++++++++.+-+.++.....+..... .|-+ .+.......|+..+.....+..|||
T Consensus 228 ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylf-v~~k~K~~yLV~ll~e~~g~s~iVF 306 (476)
T KOG0330|consen 228 ILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLF-VPGKDKDTYLVYLLNELAGNSVIVF 306 (476)
T ss_pred HHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEe-ccccccchhHHHHHHhhcCCcEEEE
Confidence 999999999999999998888888775544332221 1111 1111122356666655555455555
Q ss_pred ech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCC
Q 003587 464 FSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGD 541 (809)
Q Consensus 464 fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~ 541 (809)
++. ..+..++-.|.. .|+.+..+||.|++..|.-.++.|+ +|..+||||||+++||+|+| |+.|||||+
T Consensus 307 ~~t~~tt~~la~~L~~-lg~~a~~LhGqmsq~~Rlg~l~~Fk--~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi------ 377 (476)
T KOG0330|consen 307 CNTCNTTRFLALLLRN-LGFQAIPLHGQMSQSKRLGALNKFK--AGARSILVCTDVASRGLDIPHVDVVVNYDI------ 377 (476)
T ss_pred EeccchHHHHHHHHHh-cCcceecccchhhHHHHHHHHHHHh--ccCCcEEEecchhcccCCCCCceEEEecCC------
Confidence 543 566677777766 5999999999999999999999999 89999999999999999999 999999999
Q ss_pred CcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH
Q 003587 542 KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 542 ~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
|.+..+|+||+||+||+|. .|.+|+|++.-+-.
T Consensus 378 ---P~~skDYIHRvGRtaRaGr---sG~~ItlVtqyDve 410 (476)
T KOG0330|consen 378 ---PTHSKDYIHRVGRTARAGR---SGKAITLVTQYDVE 410 (476)
T ss_pred ---CCcHHHHHHHcccccccCC---CcceEEEEehhhhH
Confidence 9999999999999999998 89999999864333
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.6e-42 Score=404.44 Aligned_cols=308 Identities=18% Similarity=0.192 Sum_probs=224.9
Q ss_pred hhhhccCcHHHHHHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH------------cCCcEE
Q 003587 257 EFCIEEFPDEIKRFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM------------EAKKGI 322 (809)
Q Consensus 257 ~~~~~~f~~~l~~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~------------~~~~~L 322 (809)
+|....|++.+ +++|...||++||+ ...++.+++|+|+|++||||||||++++.+++ .++.+|
T Consensus 131 ~f~~~~l~~~l---~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~L 207 (545)
T PTZ00110 131 SFEYTSFPDYI---LKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVL 207 (545)
T ss_pred CHhhcCCCHHH---HHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 33334455543 57888999999998 34555689999999999999999999765543 145789
Q ss_pred EEcccHhHHHHHHHHHHhcCCc----eeeeecc-cccccc-----cCcceeeeeeec----ccC----CcccEEEEeccc
Q 003587 323 YCSPLRLLAMEVFDKVNALGVY----CSLLTGQ-EKKLVP-----FSNHIACTVEMV----STD----EMYDVAVIDEIQ 384 (809)
Q Consensus 323 vlsPtR~La~Q~~~~l~~~g~~----~~l~~g~-~~~~~~-----~~~~i~~tie~l----t~~----rlv~~vVIDEAH 384 (809)
||+|||+||.|+.+.+.+++.. +.++.|. ...... ....+++|+..+ ... ..+++|||||||
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd 287 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD 287 (545)
T ss_pred EECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH
Confidence 9999999999999999987643 3333332 221111 122344454221 111 117999999999
Q ss_pred ccccccchhHHHHHHhhcccccccccCCchHHHHHHHHhhhcCC--ce--------------EEeeccccchhhHhHHHH
Q 003587 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD--EL--------------HEQHYERFKPLVVEAKTL 448 (809)
Q Consensus 385 ~i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~--~~--------------~~~~~~r~~~l~~~~k~l 448 (809)
+|++++|...++.++..+.+..+.++.++++.+.+..++..... .+ +.+.+.... .......+
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L 366 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE-EHEKRGKL 366 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe-chhHHHHH
Confidence 99999999999999998888888888888766555544433221 11 111111111 01111234
Q ss_pred HHHHHhc--CCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccc
Q 003587 449 LGDLRNV--RSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525 (809)
Q Consensus 449 l~~l~~~--~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDi 525 (809)
...+... ..+++|||+ +++.|+.++..|... ++.+..+||++++++|..+++.|+ +|+.+|||||++++||||+
T Consensus 367 ~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~-g~~~~~ihg~~~~~eR~~il~~F~--~G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 367 KMLLQRIMRDGDKILIFVETKKGADFLTKELRLD-GWPALCIHGDKKQEERTWVLNEFK--TGKSPIMIATDVASRGLDV 443 (545)
T ss_pred HHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc-CCcEEEEECCCcHHHHHHHHHHHh--cCCCcEEEEcchhhcCCCc
Confidence 4444433 344566666 568899999999874 899999999999999999999999 8999999999999999999
Q ss_pred c-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 526 N-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 526 p-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
| |++|||||+ |.++++|+||+|||||+|. .|.|++|+++++..+.+
T Consensus 444 ~~v~~VI~~d~---------P~s~~~yvqRiGRtGR~G~---~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 444 KDVKYVINFDF---------PNQIEDYVHRIGRTGRAGA---KGASYTFLTPDKYRLAR 490 (545)
T ss_pred ccCCEEEEeCC---------CCCHHHHHHHhcccccCCC---CceEEEEECcchHHHHH
Confidence 8 999999999 9999999999999999999 89999999887655444
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-42 Score=400.77 Aligned_cols=294 Identities=20% Similarity=0.311 Sum_probs=227.8
Q ss_pred HHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc-----CC---c-EEEEcccHhHHHHHHHH
Q 003587 269 RFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME-----AK---K-GIYCSPLRLLAMEVFDK 337 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~-----~~---~-~LvlsPtR~La~Q~~~~ 337 (809)
.+++++..+||..||| ...++.++.|+|+++.|+||||||++|+.++++ .. . +||++||||||.|+++.
T Consensus 39 ~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~ 118 (513)
T COG0513 39 ELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEE 118 (513)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHH
Confidence 3467888999999999 345556899999999999999999998776653 11 2 89999999999999999
Q ss_pred HHhcCCce-----ee-eecccccccccCcceeeeeeecccCCc-------------ccEEEEecccccccccchhHHHHH
Q 003587 338 VNALGVYC-----SL-LTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSDACRGYAWTRA 398 (809)
Q Consensus 338 l~~~g~~~-----~l-~~g~~~~~~~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~~~g~~~~~i 398 (809)
+..++... .+ ++|.....+.....-.+.+.++||+|+ +.++|+||||+|+|+||..++..+
T Consensus 119 ~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I 198 (513)
T COG0513 119 LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKI 198 (513)
T ss_pred HHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHH
Confidence 99875543 33 334333222111111255667777765 789999999999999999999999
Q ss_pred HhhcccccccccCCchHHHHHHHHhhhcCCce----------------EEeeccccchhhHhHHHHHHHHHhcCCCCEEE
Q 003587 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDEL----------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVV 462 (809)
Q Consensus 399 ll~l~~~~i~l~~s~~~~~li~~l~~~~~~~~----------------~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II 462 (809)
+..++..+++++++++..+.+..++....... +.+.|............+...+.....+.+||
T Consensus 199 ~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IV 278 (513)
T COG0513 199 LKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIV 278 (513)
T ss_pred HHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999998887666665554433211 11222111111111223444444445555777
Q ss_pred Ee-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCC
Q 003587 463 AF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNG 540 (809)
Q Consensus 463 ~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg 540 (809)
|+ +++.++.++..|... |+++..+||+|+|++|.++++.|+ +|+.+||||||+++|||||| |.+|||||+
T Consensus 279 F~~tk~~~~~l~~~l~~~-g~~~~~lhG~l~q~~R~~~l~~F~--~g~~~vLVaTDvaaRGiDi~~v~~VinyD~----- 350 (513)
T COG0513 279 FVRTKRLVEELAESLRKR-GFKVAALHGDLPQEERDRALEKFK--DGELRVLVATDVAARGLDIPDVSHVINYDL----- 350 (513)
T ss_pred EeCcHHHHHHHHHHHHHC-CCeEEEecCCCCHHHHHHHHHHHH--cCCCCEEEEechhhccCCccccceeEEccC-----
Confidence 77 468899999999875 899999999999999999999999 89999999999999999998 999999999
Q ss_pred CCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 541 DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 541 ~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
|.+.+.|+||+|||||+|. .|.+++|+.+.
T Consensus 351 ----p~~~e~yvHRiGRTgRaG~---~G~ai~fv~~~ 380 (513)
T COG0513 351 ----PLDPEDYVHRIGRTGRAGR---KGVAISFVTEE 380 (513)
T ss_pred ----CCCHHHheeccCccccCCC---CCeEEEEeCcH
Confidence 9999999999999999999 89999999863
No 12
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-42 Score=363.54 Aligned_cols=297 Identities=18% Similarity=0.180 Sum_probs=232.8
Q ss_pred HHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH-------------cCCcEEEEcccHhHHHH
Q 003587 269 RFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM-------------EAKKGIYCSPLRLLAME 333 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~-------------~~~~~LvlsPtR~La~Q 333 (809)
.+++.+++.||.+||| .++++.+|+|+|++++|.||+|||+++|.+-. .++.+|+++|||+||.|
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalq 309 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQ 309 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHH
Confidence 3568899999999999 34444489999999999999999999765422 24578999999999999
Q ss_pred HHHHHHhc---C-CceeeeecccccccccCcceeeeeeecccCCc-------------ccEEEEecccccccccchhHHH
Q 003587 334 VFDKVNAL---G-VYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSDACRGYAWT 396 (809)
Q Consensus 334 ~~~~l~~~---g-~~~~l~~g~~~~~~~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~~~g~~~~ 396 (809)
+.-.+.++ | ..+++++|.....+.....-.+.+.+++|+++ +.++||||||+|+||+|.++++
T Consensus 310 ie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIr 389 (629)
T KOG0336|consen 310 IEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIR 389 (629)
T ss_pred HHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHH
Confidence 99888776 3 34667777665544333333445666677765 7899999999999999999999
Q ss_pred HHHhhcccccccccCCchHHHHHHHHhhhcCCceEEeeccc-------------cchhhHhHHHHHH-HHHhcCCCCEEE
Q 003587 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER-------------FKPLVVEAKTLLG-DLRNVRSGDCVV 462 (809)
Q Consensus 397 ~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~r-------------~~~l~~~~k~ll~-~l~~~~~g~~II 462 (809)
++++.+.+++++++.++++++-++.++.....+.+...... +.+...+.-.++. .+.+..+.+.+|
T Consensus 390 killdiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvI 469 (629)
T KOG0336|consen 390 KILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVI 469 (629)
T ss_pred HHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEE
Confidence 99999999999999999998888888776554433222111 1111112223333 334555666555
Q ss_pred Ee-ch-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCC
Q 003587 463 AF-SR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (809)
Q Consensus 463 ~f-sr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~d 539 (809)
+| ++ ..++.|...+.-. |+.+..+||+-.+.+|+..++.|+ +|+++||||||+++||||+| |.+|+|||+
T Consensus 470 iFv~~K~~AD~LSSd~~l~-gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrILvaTDlaSRGlDv~DiTHV~NyDF---- 542 (629)
T KOG0336|consen 470 IFVSRKVMADHLSSDFCLK-GISSQSLHGNREQSDREMALEDFK--SGEVRILVATDLASRGLDVPDITHVYNYDF---- 542 (629)
T ss_pred EEEechhhhhhccchhhhc-ccchhhccCChhhhhHHHHHHhhh--cCceEEEEEechhhcCCCchhcceeeccCC----
Confidence 55 55 4567777777654 999999999999999999999999 89999999999999999997 999999999
Q ss_pred CCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH
Q 003587 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
|.++++|+||+||+||+|+ .|.+++|++..+-.
T Consensus 543 -----P~nIeeYVHRvGrtGRaGr---~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 543 -----PRNIEEYVHRVGRTGRAGR---TGTSISFLTRNDWS 575 (629)
T ss_pred -----CccHHHHHHHhcccccCCC---CcceEEEEehhhHH
Confidence 9999999999999999999 89999999865433
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.8e-41 Score=392.58 Aligned_cols=297 Identities=21% Similarity=0.212 Sum_probs=218.0
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH--------------cCCcEEEEcccHhHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM--------------EAKKGIYCSPLRLLAME 333 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~--------------~~~~~LvlsPtR~La~Q 333 (809)
+++.|...||..|++ ...++.+++|+|++++||||||||++|+.+++ .++.+||++|||+||.|
T Consensus 132 l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Q 211 (518)
T PLN00206 132 LLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQ 211 (518)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHH
Confidence 346778899999999 44566689999999999999999999877654 23578999999999999
Q ss_pred HHHHHHhcCCc----ee-eeeccccccc-----ccCcceeeeeeec----ccC----CcccEEEEecccccccccchhHH
Q 003587 334 VFDKVNALGVY----CS-LLTGQEKKLV-----PFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAW 395 (809)
Q Consensus 334 ~~~~l~~~g~~----~~-l~~g~~~~~~-----~~~~~i~~tie~l----t~~----rlv~~vVIDEAH~i~d~~~g~~~ 395 (809)
+++.++.++.. +. +++|...... .....+++|++.+ ... ..+++|||||||+|++++|...+
T Consensus 212 i~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i 291 (518)
T PLN00206 212 VEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQV 291 (518)
T ss_pred HHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHH
Confidence 99998876433 22 3334332211 1123344554322 111 11789999999999999998888
Q ss_pred HHHHhhcccccccccCCchHHHHHHHHhhhcCCceEEeecc-------------ccchhhHhHHHHHHHHHhcC--CCCE
Q 003587 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE-------------RFKPLVVEAKTLLGDLRNVR--SGDC 460 (809)
Q Consensus 396 ~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~-------------r~~~l~~~~k~ll~~l~~~~--~g~~ 460 (809)
..++..++. .+.++.++++...+..++............. ...........+...+.... .+.+
T Consensus 292 ~~i~~~l~~-~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 370 (518)
T PLN00206 292 MQIFQALSQ-PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPA 370 (518)
T ss_pred HHHHHhCCC-CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCE
Confidence 888777753 4566667776655555554433222211110 00111111234555554332 2456
Q ss_pred EEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCC
Q 003587 461 VVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKY 538 (809)
Q Consensus 461 II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~ 538 (809)
|||+ ++..++.++..|....++.+..+||++++++|..+++.|+ +|+++|||||++++||||+| |++||+||+
T Consensus 371 iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr--~G~~~ILVaTdvl~rGiDip~v~~VI~~d~--- 445 (518)
T PLN00206 371 VVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFL--VGEVPVIVATGVLGRGVDLLRVRQVIIFDM--- 445 (518)
T ss_pred EEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHH--CCCCCEEEEecHhhccCCcccCCEEEEeCC---
Confidence 6666 5788999999998766899999999999999999999999 89999999999999999998 999999999
Q ss_pred CCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHH
Q 003587 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (809)
Q Consensus 539 dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l 581 (809)
|.++++|+||+|||||.|. .|.+++|++++...+
T Consensus 446 ------P~s~~~yihRiGRaGR~g~---~G~ai~f~~~~~~~~ 479 (518)
T PLN00206 446 ------PNTIKEYIHQIGRASRMGE---KGTAIVFVNEEDRNL 479 (518)
T ss_pred ------CCCHHHHHHhccccccCCC---CeEEEEEEchhHHHH
Confidence 9999999999999999998 899999998765443
No 14
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-41 Score=364.85 Aligned_cols=302 Identities=19% Similarity=0.255 Sum_probs=232.5
Q ss_pred HHHHHHHhCCCCCCCc----cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc----C------CcEEEEcccHhHHHHH
Q 003587 269 RFRAMIESADLTKPHT----WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME----A------KKGIYCSPLRLLAMEV 334 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~----~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~----~------~~~LvlsPtR~La~Q~ 334 (809)
-++.++..+||..||| .||+ ++-|+|++.||.||||||.+|+.|+++ . -++||++|||+||.|+
T Consensus 191 PlLka~~~lGy~~PTpIQ~a~IPv--allgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv 268 (691)
T KOG0338|consen 191 PLLKACSTLGYKKPTPIQVATIPV--ALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQV 268 (691)
T ss_pred HHHHHHHhcCCCCCCchhhhcccH--HhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHH
Confidence 3568999999999999 5676 699999999999999999997666552 2 2689999999999999
Q ss_pred HHHHHhcCCc----eeeeecc-cccccccCcceeeeeeecccCCc--------------ccEEEEecccccccccchhHH
Q 003587 335 FDKVNALGVY----CSLLTGQ-EKKLVPFSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSDACRGYAW 395 (809)
Q Consensus 335 ~~~l~~~g~~----~~l~~g~-~~~~~~~~~~i~~tie~lt~~rl--------------v~~vVIDEAH~i~d~~~g~~~ 395 (809)
+...+++... +++..|. ....+.......-.+.++||+|+ +.++|+||||+|++.+|...+
T Consensus 269 ~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFadem 348 (691)
T KOG0338|consen 269 HSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEM 348 (691)
T ss_pred HHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHH
Confidence 9988887544 4443332 22222111122235667788876 678999999999999999999
Q ss_pred HHHHhhcccccccccCCchHHHHHHHHhhhcCCceEEe--------------eccccchhh-HhHHH-HHHHHHhcCCCC
Q 003587 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQ--------------HYERFKPLV-VEAKT-LLGDLRNVRSGD 459 (809)
Q Consensus 396 ~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~--------------~~~r~~~l~-~~~k~-ll~~l~~~~~g~ 459 (809)
..++..++..++++++++++.+-+..++.......+.. .|.|+.|-. ..... +...+...-...
T Consensus 349 nEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~ 428 (691)
T KOG0338|consen 349 NEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDR 428 (691)
T ss_pred HHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccc
Confidence 99999999999999999999888888876544433322 222222210 01122 233334444556
Q ss_pred EEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC
Q 003587 460 CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK 537 (809)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K 537 (809)
+|||+ +++.|..+.-. .-..|.++.-+||.|+|++|...++.|+ +++++||||||+++|||||+ |..||||.+
T Consensus 429 ~ivFv~tKk~AHRl~Il-lGLlgl~agElHGsLtQ~QRlesL~kFk--~~eidvLiaTDvAsRGLDI~gV~tVINy~m-- 503 (691)
T KOG0338|consen 429 TIVFVRTKKQAHRLRIL-LGLLGLKAGELHGSLTQEQRLESLEKFK--KEEIDVLIATDVASRGLDIEGVQTVINYAM-- 503 (691)
T ss_pred eEEEEehHHHHHHHHHH-HHHhhchhhhhcccccHHHHHHHHHHHH--hccCCEEEEechhhccCCccceeEEEeccC--
Confidence 77777 45566655444 4456999999999999999999999999 89999999999999999997 999999999
Q ss_pred CCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHcC
Q 003587 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (809)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~ 587 (809)
|.+++.|+||+||+.|+|+ .|.+++|+.+++..+.+-+-.
T Consensus 504 -------P~t~e~Y~HRVGRTARAGR---aGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 504 -------PKTIEHYLHRVGRTARAGR---AGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred -------chhHHHHHHHhhhhhhccc---CcceEEEeccccHHHHHHHHh
Confidence 9999999999999999999 899999998887777665433
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.4e-40 Score=375.25 Aligned_cols=298 Identities=16% Similarity=0.210 Sum_probs=217.2
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc--------------CCcEEEEcccHhHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME--------------AKKGIYCSPLRLLAME 333 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~--------------~~~~LvlsPtR~La~Q 333 (809)
+++++...||..|++ ...++.+++|+|++++||||||||++|+.+++. ++++||++|||+||.|
T Consensus 19 l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Q 98 (423)
T PRK04837 19 VVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQ 98 (423)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHH
Confidence 457888999999999 345556899999999999999999998766541 2578999999999999
Q ss_pred HHHHHHhc----CCceeeeecccccc-----cc-cCcceeeeeeecc----cC----CcccEEEEecccccccccchhHH
Q 003587 334 VFDKVNAL----GVYCSLLTGQEKKL-----VP-FSNHIACTVEMVS----TD----EMYDVAVIDEIQMMSDACRGYAW 395 (809)
Q Consensus 334 ~~~~l~~~----g~~~~l~~g~~~~~-----~~-~~~~i~~tie~lt----~~----rlv~~vVIDEAH~i~d~~~g~~~ 395 (809)
+++.+..+ +..+.++.|..... .. ....+++|+..+. .+ ..++++||||||++++++|..++
T Consensus 99 i~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i 178 (423)
T PRK04837 99 IHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDI 178 (423)
T ss_pred HHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHH
Confidence 99888765 45555555543211 11 1234455553321 11 12899999999999999999999
Q ss_pred HHHHhhccc--ccccccCCchHHHHHHHHhhhc-CCceEE-------------eeccccchhhHhHHHHHHHHHhcCCCC
Q 003587 396 TRALLGLMA--DEIHLCGDPSVLDVVRKICSET-GDELHE-------------QHYERFKPLVVEAKTLLGDLRNVRSGD 459 (809)
Q Consensus 396 ~~ill~l~~--~~i~l~~s~~~~~li~~l~~~~-~~~~~~-------------~~~~r~~~l~~~~k~ll~~l~~~~~g~ 459 (809)
..++..++. ..+.++.+++....+..+.... .....+ +.+. ..........+...+.....+.
T Consensus 179 ~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~-~~~~~~k~~~l~~ll~~~~~~~ 257 (423)
T PRK04837 179 RWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF-YPSNEEKMRLLQTLIEEEWPDR 257 (423)
T ss_pred HHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE-eCCHHHHHHHHHHHHHhcCCCe
Confidence 888887764 3345556666544333332211 111111 1110 0001111123444444445566
Q ss_pred EEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC
Q 003587 460 CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK 537 (809)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K 537 (809)
+|||+ ++..|+.++..|... |+.+..+||+|++++|..+++.|+ +|+++||||||+++||||+| |++|||||+
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~~l~~F~--~g~~~vLVaTdv~~rGiDip~v~~VI~~d~-- 332 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAAD-GHRVGLLTGDVAQKKRLRILEEFT--RGDLDILVATDVAARGLHIPAVTHVFNYDL-- 332 (423)
T ss_pred EEEEECCHHHHHHHHHHHHhC-CCcEEEecCCCChhHHHHHHHHHH--cCCCcEEEEechhhcCCCccccCEEEEeCC--
Confidence 77777 468899999999875 999999999999999999999999 89999999999999999998 999999999
Q ss_pred CCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
|.+.++|+||+|||||+|. .|.+++|+++++.....
T Consensus 333 -------P~s~~~yiqR~GR~gR~G~---~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 333 -------PDDCEDYVHRIGRTGRAGA---SGHSISLACEEYALNLP 368 (423)
T ss_pred -------CCchhheEeccccccCCCC---CeeEEEEeCHHHHHHHH
Confidence 9999999999999999999 89999999876544333
No 16
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.6e-41 Score=351.91 Aligned_cols=308 Identities=18% Similarity=0.200 Sum_probs=241.3
Q ss_pred hhhhhHhhhhccCcHHHHHHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH------------
Q 003587 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM------------ 316 (809)
Q Consensus 251 llp~f~~~~~~~f~~~l~~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~------------ 316 (809)
.+|++.+|....||..+. +.+++.|+.+||| .+-++-+++|||+|++|-||||||+++..++.
T Consensus 165 ipPPIksF~eMKFP~~~L---~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf 241 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLL---RGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF 241 (610)
T ss_pred CCCchhhhhhccCCHHHH---HHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc
Confidence 456667777777887664 5677899999999 34455589999999999999999998544332
Q ss_pred ---cCCcEEEEcccHhHHHHHHHHHHhc-------CCc---ee-eeecccccccccCcceeeeeeecccCCc--------
Q 003587 317 ---EAKKGIYCSPLRLLAMEVFDKVNAL-------GVY---CS-LLTGQEKKLVPFSNHIACTVEMVSTDEM-------- 374 (809)
Q Consensus 317 ---~~~~~LvlsPtR~La~Q~~~~l~~~-------g~~---~~-l~~g~~~~~~~~~~~i~~tie~lt~~rl-------- 374 (809)
+++.+||++|.|+||.|+++-+..+ |.+ +. +++|-..+.+.....-.+.+.++||+|+
T Consensus 242 ~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 242 ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh
Confidence 5778999999999999999887665 221 22 2334333322111122345667888876
Q ss_pred -----ccEEEEecccccccccchhHHHHHHhhcccccccccCCchHHHHHHHHhhhcCCceEEeeccccchh--------
Q 003587 375 -----YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL-------- 441 (809)
Q Consensus 375 -----v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~r~~~l-------- 441 (809)
+.++++||||+|.|+||..+++.++.-+...++++++++++..-++.++.......+.....|-...
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQev 401 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEV 401 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHH
Confidence 6889999999999999999999999999999999999999999999888876666555555442211
Q ss_pred -hHh-HH---HHHHHHHhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEe
Q 003587 442 -VVE-AK---TLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515 (809)
Q Consensus 442 -~~~-~k---~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVA 515 (809)
++. .. .+++.|.+.. ..++||+ .+.+++.+..+|.-. |..++.+|||..+++|...++.|+ .|+.+||||
T Consensus 402 EyVkqEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlK-GVEavaIHGGKDQedR~~ai~afr--~gkKDVLVA 477 (610)
T KOG0341|consen 402 EYVKQEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLK-GVEAVAIHGGKDQEDRHYAIEAFR--AGKKDVLVA 477 (610)
T ss_pred HHHHhhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHc-cceeEEeecCcchhHHHHHHHHHh--cCCCceEEE
Confidence 111 11 3444444333 3455555 457899999998865 999999999999999999999999 899999999
Q ss_pred ccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 516 SDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 516 Tdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
||+++.|+|+| |.+|||||+ |..+++|+||+||+||.|. .|.+++|+...
T Consensus 478 TDVASKGLDFp~iqHVINyDM---------P~eIENYVHRIGRTGRsg~---~GiATTfINK~ 528 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDM---------PEEIENYVHRIGRTGRSGK---TGIATTFINKN 528 (610)
T ss_pred ecchhccCCCccchhhccCCC---------hHHHHHHHHHhcccCCCCC---cceeeeeeccc
Confidence 99999999998 999999999 9999999999999999999 89999999654
No 17
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-40 Score=356.45 Aligned_cols=301 Identities=18% Similarity=0.205 Sum_probs=236.8
Q ss_pred HHHHHHHhCCCCCCCcc--chhHHhhCCCeEEEEcCCCChHHHHHHHHHHc-----------CCcEEEEcccHhHHHHHH
Q 003587 269 RFRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFME-----------AKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~~--~p~~~~l~grdviv~apTGSGKTl~~L~~L~~-----------~~~~LvlsPtR~La~Q~~ 335 (809)
+.++.|+..+|..||+. ..|+.+|+|+||++.|.||||||+++|.|+++ +-.+|||+|||+||.|++
T Consensus 79 ~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtF 158 (758)
T KOG0343|consen 79 KTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTF 158 (758)
T ss_pred HHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHH
Confidence 45678899999999982 23444799999999999999999997766652 336799999999999999
Q ss_pred HHHHhcCCc----eeeeecccc-c----ccccCcceeeeeeecccCCc--------------ccEEEEecccccccccch
Q 003587 336 DKVNALGVY----CSLLTGQEK-K----LVPFSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSDACRG 392 (809)
Q Consensus 336 ~~l~~~g~~----~~l~~g~~~-~----~~~~~~~i~~tie~lt~~rl--------------v~~vVIDEAH~i~d~~~g 392 (809)
+.|++.|.. ++++.|... . .+...++++|| |+|+ +.++|+||||+|+||||.
T Consensus 159 evL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCT-----PGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk 233 (758)
T KOG0343|consen 159 EVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCT-----PGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFK 233 (758)
T ss_pred HHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEec-----hHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHH
Confidence 999998765 454444322 1 12234444555 4443 789999999999999999
Q ss_pred hHHHHHHhhcccccccccCCchHHHHHHHHhhhc-CCceEEeecc--------------ccchhhHhHHHHHHHHHhcCC
Q 003587 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSET-GDELHEQHYE--------------RFKPLVVEAKTLLGDLRNVRS 457 (809)
Q Consensus 393 ~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~-~~~~~~~~~~--------------r~~~l~~~~k~ll~~l~~~~~ 457 (809)
..+..++..+++.+++++++++-..-+..++... .+..++..+. ...++......|...+..+..
T Consensus 234 ~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk 313 (758)
T KOG0343|consen 234 KTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLK 313 (758)
T ss_pred HHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccc
Confidence 9999999999999999999988766666666542 2222222221 112222223466777888888
Q ss_pred CCEEEEec-hhHHHHHHHHHHH-hcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcC
Q 003587 458 GDCVVAFS-RREIFEVKMAIEK-HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYS 534 (809)
Q Consensus 458 g~~II~fs-rk~~~~l~~~L~~-~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d 534 (809)
.+.|||+| .+++.-++..+.+ .+|+.+..+||.|+|..|..+...|. ..+.-||+|||+++||||+| |++||.+|
T Consensus 314 ~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~--~~~~~vLF~TDv~aRGLDFpaVdwViQ~D 391 (758)
T KOG0343|consen 314 KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFV--RKRAVVLFCTDVAARGLDFPAVDWVIQVD 391 (758)
T ss_pred cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHH--HhcceEEEeehhhhccCCCcccceEEEec
Confidence 88999996 4777767666655 46899999999999999999999998 67888999999999999999 99999999
Q ss_pred CCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccH-HHHHHHHcCC
Q 003587 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL-DYLIECLKQP 588 (809)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~-~~l~~~l~~~ 588 (809)
+ |.++++|+||+||++|.+. .|.++++.++.. +.+...|+..
T Consensus 392 C---------Pedv~tYIHRvGRtAR~~~---~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 392 C---------PEDVDTYIHRVGRTARYKE---RGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred C---------chhHHHHHHHhhhhhcccC---CCceEEEEcchhHHHHHHHHHHc
Confidence 9 9999999999999999998 899999998766 7777777654
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.6e-39 Score=371.85 Aligned_cols=297 Identities=21% Similarity=0.208 Sum_probs=225.8
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc-------CCcEEEEcccHhHHHHHHHHHHh
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~-------~~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
+.+++..+||..|+| ...++.+++|+|++++||||||||++++.+++. ..++||++|||+||.|+++.++.
T Consensus 15 l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~ 94 (460)
T PRK11776 15 LLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRR 94 (460)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 357888999999999 345566899999999999999999997776652 23689999999999999999887
Q ss_pred cC-----Cceeeeeccccc-c----c-ccCcceeeeeeecc----cCC----cccEEEEecccccccccchhHHHHHHhh
Q 003587 341 LG-----VYCSLLTGQEKK-L----V-PFSNHIACTVEMVS----TDE----MYDVAVIDEIQMMSDACRGYAWTRALLG 401 (809)
Q Consensus 341 ~g-----~~~~l~~g~~~~-~----~-~~~~~i~~tie~lt----~~r----lv~~vVIDEAH~i~d~~~g~~~~~ill~ 401 (809)
++ ..+..++|.... . . .....+++|+..+. .+. .++++||||||+|++++|...+..++..
T Consensus 95 ~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~ 174 (460)
T PRK11776 95 LARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ 174 (460)
T ss_pred HHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh
Confidence 53 344444543321 1 1 12234455553321 111 1899999999999999999999999999
Q ss_pred cccccccccCCchHHHHHHHHhhhcCCc-e------------EEeeccccchhhHhHHHHHHHHHhcCCCCEEEEe-chh
Q 003587 402 LMADEIHLCGDPSVLDVVRKICSETGDE-L------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SRR 467 (809)
Q Consensus 402 l~~~~i~l~~s~~~~~li~~l~~~~~~~-~------------~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~f-srk 467 (809)
++...+.++.+++..+.+..+....... . +.+.|..... ......+...+....++.+|||+ +++
T Consensus 175 ~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~t~~ 253 (460)
T PRK11776 175 APARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSP-DERLPALQRLLLHHQPESCVVFCNTKK 253 (460)
T ss_pred CCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCc-HHHHHHHHHHHHhcCCCceEEEECCHH
Confidence 9888888888887766555554432211 1 1122211111 11223455555555666677777 578
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccC
Q 003587 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPV 546 (809)
Q Consensus 468 ~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~ 546 (809)
.++.++..|.+. ++.+..+||+|++.+|..+++.|+ +|+++|||||+++++|||+| |++||++|+ |.
T Consensus 254 ~~~~l~~~L~~~-~~~v~~~hg~~~~~eR~~~l~~F~--~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~---------p~ 321 (460)
T PRK11776 254 ECQEVADALNAQ-GFSALALHGDLEQRDRDQVLVRFA--NRSCSVLVATDVAARGLDIKALEAVINYEL---------AR 321 (460)
T ss_pred HHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHH--cCCCcEEEEecccccccchhcCCeEEEecC---------CC
Confidence 999999999875 999999999999999999999999 89999999999999999998 999999999 99
Q ss_pred CHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHH
Q 003587 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 547 s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~ 582 (809)
+.++|+||+|||||+|. .|.|++|+.+++....
T Consensus 322 ~~~~yiqR~GRtGR~g~---~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGS---KGLALSLVAPEEMQRA 354 (460)
T ss_pred CHhHhhhhcccccCCCC---cceEEEEEchhHHHHH
Confidence 99999999999999998 8999999987654443
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-39 Score=350.03 Aligned_cols=305 Identities=18% Similarity=0.186 Sum_probs=234.7
Q ss_pred HHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc----------CC--cEEEEcccHhHHHHH
Q 003587 269 RFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME----------AK--KGIYCSPLRLLAMEV 334 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~----------~~--~~LvlsPtR~La~Q~ 334 (809)
.+.+++..+||...|| +-.++..+.++||++-++||||||++++.|+++ .+ .+|||+||||||.||
T Consensus 16 ~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI 95 (567)
T KOG0345|consen 16 WLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQI 95 (567)
T ss_pred HHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHH
Confidence 3457899999999999 334555899999999999999999998888762 12 579999999999999
Q ss_pred HHHHHhcC-----Cceeeeeccccccccc--CcceeeeeeecccCCc---------------ccEEEEecccccccccch
Q 003587 335 FDKVNALG-----VYCSLLTGQEKKLVPF--SNHIACTVEMVSTDEM---------------YDVAVIDEIQMMSDACRG 392 (809)
Q Consensus 335 ~~~l~~~g-----~~~~l~~g~~~~~~~~--~~~i~~tie~lt~~rl---------------v~~vVIDEAH~i~d~~~g 392 (809)
.+.+..+- ..|.+++|...-.... -..-.+.+.+.||||+ ++++|+||||+++|+||.
T Consensus 96 ~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe 175 (567)
T KOG0345|consen 96 REVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFE 175 (567)
T ss_pred HHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHH
Confidence 99988763 3466666653221110 0011122334444443 789999999999999999
Q ss_pred hHHHHHHhhcccccccccCCchHHHHHHHHhhhcCCceEEeecc--cc--ch-----------hhHhHHHHHHHHHhcCC
Q 003587 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE--RF--KP-----------LVVEAKTLLGDLRNVRS 457 (809)
Q Consensus 393 ~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~--r~--~~-----------l~~~~k~ll~~l~~~~~ 457 (809)
.....++..||..+.+-+++++..+.+..+........+..... .. .| .......++..|.+...
T Consensus 176 ~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~ 255 (567)
T KOG0345|consen 176 ASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKD 255 (567)
T ss_pred HHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcccc
Confidence 99999999999999999999998887777766543332221111 00 11 11122367788888888
Q ss_pred CCEEEEech-hHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcC
Q 003587 458 GDCVVAFSR-REIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYS 534 (809)
Q Consensus 458 g~~II~fsr-k~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d 534 (809)
.++||||.. ..++-....+... .+..+..+||.|.+..|..+++.|. +..-.+|+|||+++|||||| |++||++|
T Consensus 256 kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~--~~~~~vl~~TDVaARGlDip~iD~VvQ~D 333 (567)
T KOG0345|consen 256 KKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR--KLSNGVLFCTDVAARGLDIPGIDLVVQFD 333 (567)
T ss_pred ccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH--hccCceEEeehhhhccCCCCCceEEEecC
Confidence 999999965 4444455555443 4678999999999999999999999 56778999999999999998 99999999
Q ss_pred CCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHcC
Q 003587 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (809)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~ 587 (809)
+ |.+.+.|+||+|||||.|+ .|.++.|..+......+++.-
T Consensus 334 p---------P~~~~~FvHR~GRTaR~gr---~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 334 P---------PKDPSSFVHRCGRTARAGR---EGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred C---------CCChhHHHhhcchhhhccC---ccceEEEecccHHHHHHHHHh
Confidence 9 9999999999999999999 899999998887777787753
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.3e-39 Score=371.48 Aligned_cols=297 Identities=18% Similarity=0.216 Sum_probs=219.1
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc-------------CCcEEEEcccHhHHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME-------------AKKGIYCSPLRLLAMEV 334 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~-------------~~~~LvlsPtR~La~Q~ 334 (809)
+.++|...||..||+ ...++.+++|+|++++||||||||++++.+++. ..++|||+|||+||.|+
T Consensus 12 l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi 91 (456)
T PRK10590 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQI 91 (456)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHH
Confidence 457888999999999 345556899999999999999999997766542 12689999999999999
Q ss_pred HHHHHhcC----Cceeeeecccc-ccc-----ccCcceeeeeeeccc----C----CcccEEEEecccccccccchhHHH
Q 003587 335 FDKVNALG----VYCSLLTGQEK-KLV-----PFSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWT 396 (809)
Q Consensus 335 ~~~l~~~g----~~~~l~~g~~~-~~~-----~~~~~i~~tie~lt~----~----rlv~~vVIDEAH~i~d~~~g~~~~ 396 (809)
++.+..+. ..+..+.|... ... .....+++|++.+.. . ..+++|||||||++++++|...++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~ 171 (456)
T PRK10590 92 GENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIR 171 (456)
T ss_pred HHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHH
Confidence 99998763 33333333322 111 122345566543311 1 128999999999999999999999
Q ss_pred HHHhhcccccccccCCchHHHHHHHHhhhcCCce-E-------------EeeccccchhhHhHHHHHHHHHh-cCCCCEE
Q 003587 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDEL-H-------------EQHYERFKPLVVEAKTLLGDLRN-VRSGDCV 461 (809)
Q Consensus 397 ~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~-~-------------~~~~~r~~~l~~~~k~ll~~l~~-~~~g~~I 461 (809)
.++..++...+.++.+++....+..+........ . .+.+.... . .....++..+.. .....+|
T Consensus 172 ~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~-~~k~~~l~~l~~~~~~~~~l 249 (456)
T PRK10590 172 RVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD-K-KRKRELLSQMIGKGNWQQVL 249 (456)
T ss_pred HHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC-H-HHHHHHHHHHHHcCCCCcEE
Confidence 9998888887777777776554444443322111 1 11111111 1 111233333333 3344566
Q ss_pred EEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCC
Q 003587 462 VAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (809)
Q Consensus 462 I~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~d 539 (809)
||+ ++..++.++..|.+. ++.+..+||+|++++|.++++.|+ +|+++|||||+++++|||+| |++||||++
T Consensus 250 VF~~t~~~~~~l~~~L~~~-g~~~~~lhg~~~~~~R~~~l~~F~--~g~~~iLVaTdv~~rGiDip~v~~VI~~~~---- 322 (456)
T PRK10590 250 VFTRTKHGANHLAEQLNKD-GIRSAAIHGNKSQGARTRALADFK--SGDIRVLVATDIAARGLDIEELPHVVNYEL---- 322 (456)
T ss_pred EEcCcHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHH--cCCCcEEEEccHHhcCCCcccCCEEEEeCC----
Confidence 666 467899999999875 899999999999999999999999 89999999999999999998 999999999
Q ss_pred CCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
|.+.++|+||+|||||+|. .|.+++|+..++..+.+
T Consensus 323 -----P~~~~~yvqR~GRaGR~g~---~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 323 -----PNVPEDYVHRIGRTGRAAA---TGEALSLVCVDEHKLLR 358 (456)
T ss_pred -----CCCHHHhhhhccccccCCC---CeeEEEEecHHHHHHHH
Confidence 9999999999999999998 89999999866544433
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-40 Score=360.01 Aligned_cols=299 Identities=17% Similarity=0.234 Sum_probs=233.7
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc-----------------CCcEEEEcccHhH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME-----------------AKKGIYCSPLRLL 330 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~-----------------~~~~LvlsPtR~L 330 (809)
+...++..+|+.||| .+.++.+..|++++++|+||||||.++|.+++. .|.+||++|||+|
T Consensus 85 l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL 164 (482)
T KOG0335|consen 85 LAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTREL 164 (482)
T ss_pred HhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHH
Confidence 346688999999999 345555899999999999999999998887751 2578999999999
Q ss_pred HHHHHHHHHhcCC----c-eeeeecccccccccCcceeeeeeecccCCc-------------ccEEEEeccccccc-ccc
Q 003587 331 AMEVFDKVNALGV----Y-CSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSD-ACR 391 (809)
Q Consensus 331 a~Q~~~~l~~~g~----~-~~l~~g~~~~~~~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d-~~~ 391 (809)
|.|++++.+++.. . +..+.|...+.......-.|++.++||+++ +.++||||||.|+| ++|
T Consensus 165 ~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF 244 (482)
T KOG0335|consen 165 VDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGF 244 (482)
T ss_pred hhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccc
Confidence 9999999998732 2 234444333333333334578888899887 78999999999999 999
Q ss_pred hhHHHHHHhhccc----ccccccCCchHHHHHHHHhhhcCCc-eEEe--------------eccccchhhHhHHHHHHHH
Q 003587 392 GYAWTRALLGLMA----DEIHLCGDPSVLDVVRKICSETGDE-LHEQ--------------HYERFKPLVVEAKTLLGDL 452 (809)
Q Consensus 392 g~~~~~ill~l~~----~~i~l~~s~~~~~li~~l~~~~~~~-~~~~--------------~~~r~~~l~~~~k~ll~~l 452 (809)
+++++.++..+.. .+++++++|+....+..++.....+ .+.. .+..+... .....|++.|
T Consensus 245 ~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~-~kr~~Lldll 323 (482)
T KOG0335|consen 245 EPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEM-EKRSKLLDLL 323 (482)
T ss_pred cccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecch-hhHHHHHHHh
Confidence 9999999977754 5678899999888777666554433 2222 11111111 1123566666
Q ss_pred HhcC----CC-----CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccc
Q 003587 453 RNVR----SG-----DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (809)
Q Consensus 453 ~~~~----~g-----~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~G 522 (809)
.... .+ .++||+ +.+.+..++..|... ++++..+||..++.+|.+.++.|+ +|+..|||||++++||
T Consensus 324 ~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~-~~~~~sIhg~~tq~er~~al~~Fr--~g~~pvlVaT~VaaRG 400 (482)
T KOG0335|consen 324 NKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN-GYPAKSIHGDRTQIEREQALNDFR--NGKAPVLVATNVAARG 400 (482)
T ss_pred hcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC-CCCceeecchhhhhHHHHHHHHhh--cCCcceEEEehhhhcC
Confidence 5433 23 356666 568899999999875 999999999999999999999999 8999999999999999
Q ss_pred cccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHH
Q 003587 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (809)
Q Consensus 523 IDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~ 584 (809)
||+| |++||+||+ |.++.+|+||+|||||.|. .|.++.|+......+.+.
T Consensus 401 lDi~~V~hVInyDm---------P~d~d~YvHRIGRTGR~Gn---~G~atsf~n~~~~~i~~~ 451 (482)
T KOG0335|consen 401 LDIPNVKHVINYDM---------PADIDDYVHRIGRTGRVGN---GGRATSFFNEKNQNIAKA 451 (482)
T ss_pred CCCCCCceeEEeec---------CcchhhHHHhccccccCCC---CceeEEEeccccchhHHH
Confidence 9998 999999999 9999999999999999999 899999998555444443
No 22
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=350.63 Aligned_cols=296 Identities=18% Similarity=0.222 Sum_probs=232.6
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH------------cCCcEEEEcccHhHHHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM------------EAKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~------------~~~~~LvlsPtR~La~Q~~ 335 (809)
|+.++.+..|.+||+ +..++.++.|+||+.+|-||||||.+++.+.+ +++.+|||+|||+||.|++
T Consensus 234 Lm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~ 313 (731)
T KOG0339|consen 234 LMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIF 313 (731)
T ss_pred HHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHH
Confidence 467889999999999 45555589999999999999999999766543 3567899999999999999
Q ss_pred HHHHhcCCce-----eeeecccccccccCcceeeeeeecccCCc-------------ccEEEEecccccccccchhHHHH
Q 003587 336 DKVNALGVYC-----SLLTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSDACRGYAWTR 397 (809)
Q Consensus 336 ~~l~~~g~~~-----~l~~g~~~~~~~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~~~g~~~~~ 397 (809)
..++++|... ++++|.....+.......+.+.++||+|+ ++++|||||++|.++||.++.+.
T Consensus 314 ~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 314 SEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHH
Confidence 9999985543 34555444333333344555666667665 78999999999999999999999
Q ss_pred HHhhcccccccccCCchHHHHHHHHhhhcCCceEE--------------eeccccchhhHhHHHHHHHHHh-cCCCCEEE
Q 003587 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE--------------QHYERFKPLVVEAKTLLGDLRN-VRSGDCVV 462 (809)
Q Consensus 398 ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~--------------~~~~r~~~l~~~~k~ll~~l~~-~~~g~~II 462 (809)
|...+++++++|++++++..-++.++.......+. +....+..-...-..++..|.. ...|+++|
T Consensus 394 I~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvli 473 (731)
T KOG0339|consen 394 IKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLI 473 (731)
T ss_pred HHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEE
Confidence 99999999999999998877776666543322111 1111111111111234444433 34578888
Q ss_pred Eech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCC
Q 003587 463 AFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNG 540 (809)
Q Consensus 463 ~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg 540 (809)
|.|+ ..+++++..|.-. +++|..+||+|.+.+|.+++..|+ .+...||||||++++|+||| ++.|||||+
T Consensus 474 fVTKk~~~e~i~a~Lklk-~~~v~llhgdkdqa~rn~~ls~fK--kk~~~VlvatDvaargldI~~ikTVvnyD~----- 545 (731)
T KOG0339|consen 474 FVTKKADAEEIAANLKLK-GFNVSLLHGDKDQAERNEVLSKFK--KKRKPVLVATDVAARGLDIPSIKTVVNYDF----- 545 (731)
T ss_pred EEeccCCHHHHHHHhccc-cceeeeecCchhhHHHHHHHHHHh--hcCCceEEEeeHhhcCCCccccceeecccc-----
Confidence 8886 5788888888764 999999999999999999999999 78899999999999999998 999999999
Q ss_pred CCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH
Q 003587 541 DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 541 ~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
-.+++.|.||+||+||+|. .|.+|+|+++.+..
T Consensus 546 ----ardIdththrigrtgRag~---kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 ----ARDIDTHTHRIGRTGRAGE---KGVAYTLVTEKDAE 578 (731)
T ss_pred ----cchhHHHHHHhhhcccccc---cceeeEEechhhHH
Confidence 6699999999999999999 89999999876544
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.3e-39 Score=376.32 Aligned_cols=295 Identities=21% Similarity=0.241 Sum_probs=217.0
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc--------------CCcEEEEcccHhHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME--------------AKKGIYCSPLRLLAME 333 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~--------------~~~~LvlsPtR~La~Q 333 (809)
++++|...||..||+ ...++.+++|+|++++||||||||++|+.+++. .+++|||+|||+||.|
T Consensus 20 l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Q 99 (572)
T PRK04537 20 LLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQ 99 (572)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHH
Confidence 457889999999999 344555899999999999999999998776542 2578999999999999
Q ss_pred HHHHHHhcCCc----eeeeecccccc-----cc-cCcceeeeeeecc----cC-----CcccEEEEecccccccccchhH
Q 003587 334 VFDKVNALGVY----CSLLTGQEKKL-----VP-FSNHIACTVEMVS----TD-----EMYDVAVIDEIQMMSDACRGYA 394 (809)
Q Consensus 334 ~~~~l~~~g~~----~~l~~g~~~~~-----~~-~~~~i~~tie~lt----~~-----rlv~~vVIDEAH~i~d~~~g~~ 394 (809)
+++.+..++.. +..++|..... .. ....+++|+..+. .. ..+++|||||||+|++++|..+
T Consensus 100 i~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~ 179 (572)
T PRK04537 100 IHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKD 179 (572)
T ss_pred HHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHH
Confidence 99999887543 44455433211 11 1234556654321 11 1178899999999999999988
Q ss_pred HHHHHhhccc--ccccccCCchHHHHHHHHhhhcCCc---e-----------EEeeccccchhhHhHHHHHHHHHhcCCC
Q 003587 395 WTRALLGLMA--DEIHLCGDPSVLDVVRKICSETGDE---L-----------HEQHYERFKPLVVEAKTLLGDLRNVRSG 458 (809)
Q Consensus 395 ~~~ill~l~~--~~i~l~~s~~~~~li~~l~~~~~~~---~-----------~~~~~~r~~~l~~~~k~ll~~l~~~~~g 458 (809)
+..++..++. ..+.++.+++....+..+....... + +.+.+... ........++..+......
T Consensus 180 i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~~ 258 (572)
T PRK04537 180 IRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTLLLGLLSRSEGA 258 (572)
T ss_pred HHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHHHHHHHhcccCC
Confidence 8888877765 4456666666543333332221111 1 11111111 1111122344445444455
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCC
Q 003587 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS 536 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~ 536 (809)
.+|||+ ++..++.++..|.+. ++.+..+||+|++.+|..+++.|+ +|+++|||||+++++|||+| |++|||||+
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-g~~v~~lhg~l~~~eR~~il~~Fr--~G~~~VLVaTdv~arGIDip~V~~VInyd~- 334 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-GYRVGVLSGDVPQKKRESLLNRFQ--KGQLEILVATDVAARGLHIDGVKYVYNYDL- 334 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHHHH--cCCCeEEEEehhhhcCCCccCCCEEEEcCC-
Confidence 677776 568899999999875 899999999999999999999999 89999999999999999998 999999999
Q ss_pred CCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH
Q 003587 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
|.+.++|+||+|||||.|. .|.|++|+.++...
T Consensus 335 --------P~s~~~yvqRiGRaGR~G~---~G~ai~~~~~~~~~ 367 (572)
T PRK04537 335 --------PFDAEDYVHRIGRTARLGE---EGDAISFACERYAM 367 (572)
T ss_pred --------CCCHHHHhhhhcccccCCC---CceEEEEecHHHHH
Confidence 9999999999999999999 89999999765433
No 24
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.4e-39 Score=351.18 Aligned_cols=303 Identities=19% Similarity=0.184 Sum_probs=237.3
Q ss_pred HHHHHhCCCCCCCccc--hhHHhhCCCeEEEEcCCCChHHHHHHHHHHc----------C-CcEEEEcccHhHHHHHHHH
Q 003587 271 RAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME----------A-KKGIYCSPLRLLAMEVFDK 337 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~~~--p~~~~l~grdviv~apTGSGKTl~~L~~L~~----------~-~~~LvlsPtR~La~Q~~~~ 337 (809)
..+|+.+||+..|+.+ .++.++.|+|+++.|.||||||+++|.+..+ . -.+|||+|||+||.|++..
T Consensus 94 ~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~e 173 (543)
T KOG0342|consen 94 LKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAE 173 (543)
T ss_pred HHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHH
Confidence 4788999999999932 3334799999999999999999997655431 1 2578999999999999999
Q ss_pred HHhc-----CCceeeeeccccccc-ccCcceeeeeeecccCCc--------------ccEEEEecccccccccchhHHHH
Q 003587 338 VNAL-----GVYCSLLTGQEKKLV-PFSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSDACRGYAWTR 397 (809)
Q Consensus 338 l~~~-----g~~~~l~~g~~~~~~-~~~~~i~~tie~lt~~rl--------------v~~vVIDEAH~i~d~~~g~~~~~ 397 (809)
++++ ++.++++.|...... .....-.|.+.++||||+ ++++||||||+++|+||..++..
T Consensus 174 ak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~ 253 (543)
T KOG0342|consen 174 AKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQ 253 (543)
T ss_pred HHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHH
Confidence 8875 455666555544322 122222677888999987 57899999999999999999999
Q ss_pred HHhhcccccccccCCchHHHHHHHHhhhcC--CceEEeec--------ccc------chhhHhHHHHHHHHHhcCC-CCE
Q 003587 398 ALLGLMADEIHLCGDPSVLDVVRKICSETG--DELHEQHY--------ERF------KPLVVEAKTLLGDLRNVRS-GDC 460 (809)
Q Consensus 398 ill~l~~~~i~l~~s~~~~~li~~l~~~~~--~~~~~~~~--------~r~------~~l~~~~k~ll~~l~~~~~-g~~ 460 (809)
++..++..+++++++++...-++.++.-.. +...+... ++. .+.....-.++..|+++.. .++
T Consensus 254 Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~Ki 333 (543)
T KOG0342|consen 254 IIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKI 333 (543)
T ss_pred HHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceE
Confidence 999999999999999987777766654322 11111111 111 1111111245556665555 667
Q ss_pred EEEechhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCC
Q 003587 461 VVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (809)
Q Consensus 461 II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~d 539 (809)
||||+.-....+...|.+...+.|..+||+++|..|..+...|+ +.+..||||||+++||+|+| |+.||.||+
T Consensus 334 iVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~--kaesgIL~cTDVaARGlD~P~V~~VvQ~~~---- 407 (543)
T KOG0342|consen 334 IVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFC--KAESGILVCTDVAARGLDIPDVDWVVQYDP---- 407 (543)
T ss_pred EEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHh--hcccceEEecchhhccCCCCCceEEEEeCC----
Confidence 77887777677777777777999999999999999999999999 78999999999999999999 999999999
Q ss_pred CCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHcC
Q 003587 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (809)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~ 587 (809)
|.+.++|+||+|||||.|. .|.+++|..+++..+.+.+..
T Consensus 408 -----P~d~~~YIHRvGRTaR~gk---~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 408 -----PSDPEQYIHRVGRTAREGK---EGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred -----CCCHHHHHHHhccccccCC---CceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999998 899999999888888777763
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.6e-39 Score=376.53 Aligned_cols=300 Identities=19% Similarity=0.225 Sum_probs=224.8
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH-------cCCcEEEEcccHhHHHHHHHHHHh
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM-------EAKKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~-------~~~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
++++|...||..|++ ...++.+++|+|+|++||||||||++++.+++ ..+++||++|||+||.|+++.+..
T Consensus 17 ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~ 96 (629)
T PRK11634 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTD 96 (629)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 457888999999999 34555689999999999999999999766654 245789999999999999999887
Q ss_pred c-----CCceeeee-ccccccc-----ccCcceeeeeeec----ccC----CcccEEEEecccccccccchhHHHHHHhh
Q 003587 341 L-----GVYCSLLT-GQEKKLV-----PFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTRALLG 401 (809)
Q Consensus 341 ~-----g~~~~l~~-g~~~~~~-----~~~~~i~~tie~l----t~~----rlv~~vVIDEAH~i~d~~~g~~~~~ill~ 401 (809)
+ ++.+..+. |...... .....+++|+..+ ... ..+.+|||||||+|++++|..++..++..
T Consensus 97 ~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~ 176 (629)
T PRK11634 97 FSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQ 176 (629)
T ss_pred HHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHh
Confidence 5 34443333 3322211 1123445565322 111 12789999999999999999999999999
Q ss_pred cccccccccCCchHHHHHHHHhhhcCCce--------------EEeeccccchhhHhHHHHHHHHHhcCCCCEEEEe-ch
Q 003587 402 LMADEIHLCGDPSVLDVVRKICSETGDEL--------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SR 466 (809)
Q Consensus 402 l~~~~i~l~~s~~~~~li~~l~~~~~~~~--------------~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~f-sr 466 (809)
++...+.++.+++..+.+..+........ +.+.|..... ......+...+.......+|||+ ++
T Consensus 177 lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~L~~~~~~~~IVF~~tk 255 (629)
T PRK11634 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRTK 255 (629)
T ss_pred CCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHHHHhcCCCCEEEEeccH
Confidence 98888888888776655554443322111 1111111111 11123455555555556677776 56
Q ss_pred hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCccc
Q 003587 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIP 545 (809)
Q Consensus 467 k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P 545 (809)
..+..++..|.+. |+.+..+||+|++.+|.++++.|+ +|+++|||||+++++|||+| |++|||||+ |
T Consensus 256 ~~a~~l~~~L~~~-g~~~~~lhgd~~q~~R~~il~~Fr--~G~~~ILVATdv~arGIDip~V~~VI~~d~---------P 323 (629)
T PRK11634 256 NATLEVAEALERN-GYNSAALNGDMNQALREQTLERLK--DGRLDILIATDVAARGLDVERISLVVNYDI---------P 323 (629)
T ss_pred HHHHHHHHHHHhC-CCCEEEeeCCCCHHHHHHHHHHHh--CCCCCEEEEcchHhcCCCcccCCEEEEeCC---------C
Confidence 8899999999875 899999999999999999999999 89999999999999999998 999999999 9
Q ss_pred CCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHH
Q 003587 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (809)
Q Consensus 546 ~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l 585 (809)
.+.++|+||+|||||+|. .|.+++|+.+.+....+.+
T Consensus 324 ~~~e~yvqRiGRtGRaGr---~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 324 MDSESYVHRIGRTGRAGR---AGRALLFVENRERRLLRNI 360 (629)
T ss_pred CCHHHHHHHhccccCCCC---cceEEEEechHHHHHHHHH
Confidence 999999999999999999 8999999987655554444
No 26
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=334.67 Aligned_cols=302 Identities=18% Similarity=0.256 Sum_probs=227.5
Q ss_pred HHHHHhCCCCCCCcc--chhHHhhCCCeEEEEcCCCChHHHHHHHHH----HcCC---cEEEEcccHhHHHHHHHHHHhc
Q 003587 271 RAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRF----MEAK---KGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~~--~p~~~~l~grdviv~apTGSGKTl~~L~~L----~~~~---~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
.+.++.+|+..|||. -.++.++.|+|+|.+|.||||||.++..++ .+.+ -++|++|||+||.|+.++|...
T Consensus 19 ve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~al 98 (442)
T KOG0340|consen 19 VEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIAL 98 (442)
T ss_pred HHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHh
Confidence 367889999999993 235559999999999999999999954444 3444 3689999999999999999987
Q ss_pred CCc----eeeeeccccc-----ccccCccee-eeeeecccC------------CcccEEEEecccccccccchhHHHHHH
Q 003587 342 GVY----CSLLTGQEKK-----LVPFSNHIA-CTVEMVSTD------------EMYDVAVIDEIQMMSDACRGYAWTRAL 399 (809)
Q Consensus 342 g~~----~~l~~g~~~~-----~~~~~~~i~-~tie~lt~~------------rlv~~vVIDEAH~i~d~~~g~~~~~il 399 (809)
|.. ++++.|.... .....+|++ .|+.-+.+. ..+.++|+||||.+++.+|-..+..+.
T Consensus 99 Gk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~ 178 (442)
T KOG0340|consen 99 GKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIE 178 (442)
T ss_pred cccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhh
Confidence 654 5555554332 122334433 333222111 017899999999999999999999999
Q ss_pred hhcccccccccCCchHHHHHHHHhhhcCCce---EEeecc------------ccchhhHhHHHHHHHHH---hcCCCCEE
Q 003587 400 LGLMADEIHLCGDPSVLDVVRKICSETGDEL---HEQHYE------------RFKPLVVEAKTLLGDLR---NVRSGDCV 461 (809)
Q Consensus 400 l~l~~~~i~l~~s~~~~~li~~l~~~~~~~~---~~~~~~------------r~~~l~~~~k~ll~~l~---~~~~g~~I 461 (809)
..+++.+++++.+++..+.+..+........ +...+. -+.+..+....++..|. +...+.++
T Consensus 179 e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~sim 258 (442)
T KOG0340|consen 179 ECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIM 258 (442)
T ss_pred ccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEE
Confidence 9999999999999998888876654332221 111100 01122222233444443 33456677
Q ss_pred EEech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCC
Q 003587 462 VAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (809)
Q Consensus 462 I~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~d 539 (809)
||.++ ++|..++..|.. .++++..+||.|+|.+|...+.+|+ ++..+||||||+++||+||| |+.|||+|.
T Consensus 259 IFvnttr~cQ~l~~~l~~-le~r~~~lHs~m~Q~eR~~aLsrFr--s~~~~iliaTDVAsRGLDIP~V~LVvN~di---- 331 (442)
T KOG0340|consen 259 IFVNTTRECQLLSMTLKN-LEVRVVSLHSQMPQKERLAALSRFR--SNAARILIATDVASRGLDIPTVELVVNHDI---- 331 (442)
T ss_pred EEeehhHHHHHHHHHHhh-hceeeeehhhcchHHHHHHHHHHHh--hcCccEEEEechhhcCCCCCceeEEEecCC----
Confidence 77765 667667766665 5999999999999999999999999 89999999999999999999 999999999
Q ss_pred CCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHcC
Q 003587 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (809)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~ 587 (809)
|.++.+|+||+||+.|+|+ .|.++.|+++.+-.+...+++
T Consensus 332 -----Pr~P~~yiHRvGRtARAGR---~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 332 -----PRDPKDYIHRVGRTARAGR---KGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred -----CCCHHHHHHhhcchhcccC---CcceEEEechhhHHHHHHHHH
Confidence 9999999999999999999 899999999777677666654
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2e-38 Score=361.91 Aligned_cols=295 Identities=19% Similarity=0.273 Sum_probs=216.1
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc-----------CCcEEEEcccHhHHHHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME-----------AKKGIYCSPLRLLAMEVFD 336 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~-----------~~~~LvlsPtR~La~Q~~~ 336 (809)
+++++...||..|++ ...++.+++|+|++++||||||||++++.+++. .+++||++||++||.|+++
T Consensus 12 l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~ 91 (434)
T PRK11192 12 LLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVAD 91 (434)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHH
Confidence 457889999999999 345556899999999999999999997665542 2578999999999999999
Q ss_pred HHHhc----CCceeeeeccccccc------ccCcceeeeeeecc----cC----CcccEEEEecccccccccchhHHHHH
Q 003587 337 KVNAL----GVYCSLLTGQEKKLV------PFSNHIACTVEMVS----TD----EMYDVAVIDEIQMMSDACRGYAWTRA 398 (809)
Q Consensus 337 ~l~~~----g~~~~l~~g~~~~~~------~~~~~i~~tie~lt----~~----rlv~~vVIDEAH~i~d~~~g~~~~~i 398 (809)
.+..+ +..+..++|...... .....+++|+..+. .+ +.+++|||||||+|++++|+..+..+
T Consensus 92 ~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i 171 (434)
T PRK11192 92 QARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETI 171 (434)
T ss_pred HHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHH
Confidence 88876 445566665432211 11234455553221 11 12789999999999999999999888
Q ss_pred HhhcccccccccCCchHH-HHHHHHhhhcCCce--------------EEeeccccchhhHhHHHHHHHHHh-cCCCCEEE
Q 003587 399 LLGLMADEIHLCGDPSVL-DVVRKICSETGDEL--------------HEQHYERFKPLVVEAKTLLGDLRN-VRSGDCVV 462 (809)
Q Consensus 399 ll~l~~~~i~l~~s~~~~-~li~~l~~~~~~~~--------------~~~~~~r~~~l~~~~k~ll~~l~~-~~~g~~II 462 (809)
...++...+.++.+++.. ..+..+........ +.+.+....... ....++..+.. ...+.+||
T Consensus 172 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-~k~~~l~~l~~~~~~~~~lV 250 (434)
T PRK11192 172 AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLE-HKTALLCHLLKQPEVTRSIV 250 (434)
T ss_pred HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHH-HHHHHHHHHHhcCCCCeEEE
Confidence 877776666666665542 22333333221111 111111111111 11233333333 34556666
Q ss_pred Ee-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCC
Q 003587 463 AF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNG 540 (809)
Q Consensus 463 ~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg 540 (809)
|+ ++..++.++..|... ++.+..+||+|++.+|..+++.|+ +|+++|||||+++++|||+| |++|||||+
T Consensus 251 F~~s~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~R~~~l~~f~--~G~~~vLVaTd~~~~GiDip~v~~VI~~d~----- 322 (434)
T PRK11192 251 FVRTRERVHELAGWLRKA-GINCCYLEGEMVQAKRNEAIKRLT--DGRVNVLVATDVAARGIDIDDVSHVINFDM----- 322 (434)
T ss_pred EeCChHHHHHHHHHHHhC-CCCEEEecCCCCHHHHHHHHHHHh--CCCCcEEEEccccccCccCCCCCEEEEECC-----
Confidence 66 568899999999874 899999999999999999999999 89999999999999999998 999999999
Q ss_pred CCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH
Q 003587 541 DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 541 ~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
|.+.+.|+||+|||||+|. .|.+++|+..++..
T Consensus 323 ----p~s~~~yiqr~GR~gR~g~---~g~ai~l~~~~d~~ 355 (434)
T PRK11192 323 ----PRSADTYLHRIGRTGRAGR---KGTAISLVEAHDHL 355 (434)
T ss_pred ----CCCHHHHhhcccccccCCC---CceEEEEecHHHHH
Confidence 9999999999999999998 89999999765443
No 28
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-39 Score=325.04 Aligned_cols=306 Identities=16% Similarity=0.172 Sum_probs=231.7
Q ss_pred hccCcHHHHHHHHHHHhCCCCCCCcc--chhHHhhCCCeEEEEcCCCChHHHHH----HHHHH---cCCcEEEEcccHhH
Q 003587 260 IEEFPDEIKRFRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNA----LQRFM---EAKKGIYCSPLRLL 330 (809)
Q Consensus 260 ~~~f~~~l~~i~~~l~~~g~~~Pt~~--~p~~~~l~grdviv~apTGSGKTl~~----L~~L~---~~~~~LvlsPtR~L 330 (809)
..++.+.+ +..+...||++|+.. -+++.+++|+||++.|..|+|||.++ |+.+- +.-+++|++|||||
T Consensus 31 ~Mgl~edl---LrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 31 DMGLKEDL---LRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTREL 107 (400)
T ss_pred hcCchHHH---HHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHH
Confidence 33444444 468889999999883 34556899999999999999999873 44332 23478999999999
Q ss_pred HHHHHHHHHhcCCce-----eeeecccccccccCcceeeeeeecccCCc-------------ccEEEEecccccccccch
Q 003587 331 AMEVFDKVNALGVYC-----SLLTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSDACRG 392 (809)
Q Consensus 331 a~Q~~~~l~~~g~~~-----~l~~g~~~~~~~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~~~g 392 (809)
|.|+.+.+..+|... .+++|...+.........+.+...+|++. +.++|+||||.|++.+|+
T Consensus 108 a~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk 187 (400)
T KOG0328|consen 108 AVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFK 187 (400)
T ss_pred HHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHH
Confidence 999999999987654 34555554433222223334444455543 899999999999999999
Q ss_pred hHHHHHHhhcccccccccCCchHHHHHHHHhhhcCCceEEeeccc--------------cchhhHhHHHHHHHHHhcCCC
Q 003587 393 YAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER--------------FKPLVVEAKTLLGDLRNVRSG 458 (809)
Q Consensus 393 ~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~r--------------~~~l~~~~k~ll~~l~~~~~g 458 (809)
.+.-+++..+++..+.++.+++....+.........+.+.....| ...-......|++....+.-.
T Consensus 188 ~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtIt 267 (400)
T KOG0328|consen 188 EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTIT 267 (400)
T ss_pred HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehh
Confidence 999999999998888777777765544444333322222221111 111111223566666666667
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCC
Q 003587 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS 536 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~ 536 (809)
++|||| +++++..+.+.+++. .+.|..+||+|++++|+.+++.|+ +|+.+||++||+.+||||+| |.+|||||+
T Consensus 268 QavIFcnTk~kVdwLtekm~~~-nftVssmHGDm~qkERd~im~dFR--sg~SrvLitTDVwaRGiDv~qVslviNYDL- 343 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMREA-NFTVSSMHGDMEQKERDKIMNDFR--SGKSRVLITTDVWARGIDVQQVSLVINYDL- 343 (400)
T ss_pred eEEEEecccchhhHHHHHHHhh-CceeeeccCCcchhHHHHHHHHhh--cCCceEEEEechhhccCCcceeEEEEecCC-
Confidence 788888 578999999999885 899999999999999999999999 89999999999999999999 999999999
Q ss_pred CCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
|...+.|+||+||.||+|+ +|.++.|+..++-...+
T Consensus 344 --------P~nre~YIHRIGRSGRFGR---kGvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 344 --------PNNRELYIHRIGRSGRFGR---KGVAINFVKSDDLRILR 379 (400)
T ss_pred --------CccHHHHhhhhccccccCC---cceEEEEecHHHHHHHH
Confidence 9999999999999999999 89999999766544433
No 29
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1e-38 Score=339.09 Aligned_cols=341 Identities=19% Similarity=0.234 Sum_probs=240.4
Q ss_pred CCCCCccchhHHhh-CCCeEEEEcCCCChHHHH-HHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccccc--
Q 003587 279 LTKPHTWFPFARVM-KRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK-- 354 (809)
Q Consensus 279 ~~~Pt~~~p~~~~l-~grdviv~apTGSGKTl~-~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~-- 354 (809)
|..|-+..++..+. ..+||.|++|||+|||+| +|++|+.++.+||++|+.+|..++.+.|..+-+++.-+++....
T Consensus 20 FKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~E 99 (641)
T KOG0352|consen 20 FKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVE 99 (641)
T ss_pred hcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHH
Confidence 44444444444444 556999999999999999 79999999999999999999999999999998887655543221
Q ss_pred ----------ccccCcceeeeeeecccCC------------cccEEEEecccccccccchhHHHHHHhhccccc------
Q 003587 355 ----------LVPFSNHIACTVEMVSTDE------------MYDVAVIDEIQMMSDACRGYAWTRALLGLMADE------ 406 (809)
Q Consensus 355 ----------~~~~~~~i~~tie~lt~~r------------lv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~------ 406 (809)
..+....+++|+|++.... .+.++|+|||||+++ ||++|++.|+.|.+-+
T Consensus 100 R~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ--WGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 100 RSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ--WGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh--hccccCcchhhhhhHHhhCCCC
Confidence 1223345678888875432 289999999999997 9999999998876532
Q ss_pred --cccc--CCchHHHHHHHHhhhcC-CceEEe-eccccchhh-HhHH-------HHHHHH-----H------hcCC---C
Q 003587 407 --IHLC--GDPSVLDVVRKICSETG-DELHEQ-HYERFKPLV-VEAK-------TLLGDL-----R------NVRS---G 458 (809)
Q Consensus 407 --i~l~--~s~~~~~li~~l~~~~~-~~~~~~-~~~r~~~l~-~~~k-------~ll~~l-----~------~~~~---g 458 (809)
+.|+ +++.+.+.+-.-+.... ..++.. .| |.+-.+ +..+ ..+... - +..+ |
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F-R~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~G 256 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF-RDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTG 256 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcch-hhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCc
Confidence 2333 34444443322221111 111111 11 111000 0001 111111 1 0111 1
Q ss_pred -CEEEEechhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCC
Q 003587 459 -DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS 536 (809)
Q Consensus 459 -~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~ 536 (809)
.+|+|-+|.+|++++-.|... |+.+..||+||...+|..+.+.|. ++++.||+||..+|||+|.| |++|||+++
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~-Gi~A~AYHAGLK~~ERTeVQe~WM--~~~~PvI~AT~SFGMGVDKp~VRFViHW~~- 332 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIA-GIPAMAYHAGLKKKERTEVQEKWM--NNEIPVIAATVSFGMGVDKPDVRFVIHWSP- 332 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhc-CcchHHHhcccccchhHHHHHHHh--cCCCCEEEEEeccccccCCcceeEEEecCc-
Confidence 244445789999999999886 999999999999999999999999 89999999999999999998 999999999
Q ss_pred CCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHcC-Cch--------HHHHhcCCCcHHHHHHH
Q 003587 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ-PFE--------VVKKVGLFPFFEQVELF 607 (809)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~-~~~--------~~~~~~~~p~~~~l~~~ 607 (809)
|.+++.|+|..|||||+|. ..+|-++|+.++.....+|-+ ... +.........++.|..|
T Consensus 333 --------~qn~AgYYQESGRAGRDGk---~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eF 401 (641)
T KOG0352|consen 333 --------SQNLAGYYQESGRAGRDGK---RSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEF 401 (641)
T ss_pred --------hhhhHHHHHhccccccCCC---ccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 8899999999999999999 899999998766665555432 211 11111222457889999
Q ss_pred HhcCccchHHHHHHHHhhhcc-cCCccccCCc
Q 003587 608 AGQLSNYTFCQLLEKFGENCR-LDGSYFLCRH 638 (809)
Q Consensus 608 ~~~~~~~~~~~ll~~f~e~~~-~~~~~~~c~~ 638 (809)
|+. ..|+...|.+||++... ..+++..|..
T Consensus 402 CE~-~~CRH~~ia~fFgD~~p~ckg~cd~c~~ 432 (641)
T KOG0352|consen 402 CES-ARCRHVSIASFFDDTECPCKTNCDYCRD 432 (641)
T ss_pred HHH-cccchHHHHHhcCCCCCCCCCCccccCC
Confidence 999 66999999999998643 2344555553
No 30
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.1e-39 Score=382.44 Aligned_cols=329 Identities=23% Similarity=0.268 Sum_probs=251.0
Q ss_pred CccchhHHhhCCCeEEEEcCCCChHHHH-HHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccccccc-----
Q 003587 283 HTWFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV----- 356 (809)
Q Consensus 283 t~~~p~~~~l~grdviv~apTGSGKTl~-~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~----- 356 (809)
-++..+...+.|+|+++.+|||+||++| +|++++.++.+|||+|+++||++|...|...++++..+++......
T Consensus 268 ~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~ 347 (941)
T KOG0351|consen 268 NQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAIL 347 (941)
T ss_pred hHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHH
Confidence 3456666789999999999999999999 7999999999999999999999999999888999988887654421
Q ss_pred -------ccCcceeeeeeecccCC-------------cccEEEEecccccccccchhHHHHHHhhcccc--------ccc
Q 003587 357 -------PFSNHIACTVEMVSTDE-------------MYDVAVIDEIQMMSDACRGYAWTRALLGLMAD--------EIH 408 (809)
Q Consensus 357 -------~~~~~i~~tie~lt~~r-------------lv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~--------~i~ 408 (809)
+.-..+++|+|++.... ++.++|||||||+++ ||++||+.|..+..- -+.
T Consensus 348 q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSq--WgHdFRp~Yk~l~~l~~~~~~vP~iA 425 (941)
T KOG0351|consen 348 QKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQ--WGHDFRPSYKRLGLLRIRFPGVPFIA 425 (941)
T ss_pred HHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhh--hcccccHHHHHHHHHHhhCCCCCeEE
Confidence 12223456666543321 278999999999997 899999988665432 233
Q ss_pred ccCCc--hHHHHHHHHhhhcCCceEEeeccccchh-hHh-------HHHHHHHHHhcCCCC--EEEEechhHHHHHHHHH
Q 003587 409 LCGDP--SVLDVVRKICSETGDELHEQHYERFKPL-VVE-------AKTLLGDLRNVRSGD--CVVAFSRREIFEVKMAI 476 (809)
Q Consensus 409 l~~s~--~~~~li~~l~~~~~~~~~~~~~~r~~~l-~~~-------~k~ll~~l~~~~~g~--~II~fsrk~~~~l~~~L 476 (809)
+++++ .+...+...+......++...|.|.+-. .+. ...++..+....++. +|+|.+|++|++++..|
T Consensus 426 LTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L 505 (941)
T KOG0351|consen 426 LTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVL 505 (941)
T ss_pred eehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHH
Confidence 44444 3333333333444555666667665421 111 113334444444444 34444789999999999
Q ss_pred HHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHH
Q 003587 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555 (809)
Q Consensus 477 ~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~ 555 (809)
.+. |+.+..||+||++.+|..+.+.|. .++++|+|||-|+|||||.| ||.||||++ |.|++.|+|.+
T Consensus 506 ~~~-~~~a~~YHAGl~~~~R~~Vq~~w~--~~~~~VivATVAFGMGIdK~DVR~ViH~~l---------Pks~E~YYQE~ 573 (941)
T KOG0351|consen 506 RSL-GKSAAFYHAGLPPKERETVQKAWM--SDKIRVIVATVAFGMGIDKPDVRFVIHYSL---------PKSFEGYYQEA 573 (941)
T ss_pred HHh-chhhHhhhcCCCHHHHHHHHHHHh--cCCCeEEEEEeeccCCCCCCceeEEEECCC---------chhHHHHHHhc
Confidence 986 899999999999999999999999 89999999999999999997 999999999 88999999999
Q ss_pred cccCCCCCCCCceEEEEEecc-cHHHHHHHHcCCchH--HHHhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcc
Q 003587 556 GRAGRRGSIYPDGLTTTLNLD-DLDYLIECLKQPFEV--VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628 (809)
Q Consensus 556 GRAGR~G~~~~~G~~i~~~~~-d~~~l~~~l~~~~~~--~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~ 628 (809)
|||||+|. ...|++||.. |...++.++...... ..+..-...+.++..||+....|++..++.||++.+.
T Consensus 574 GRAGRDG~---~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~ 646 (941)
T KOG0351|consen 574 GRAGRDGL---PSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFD 646 (941)
T ss_pred cccCcCCC---cceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccccc
Confidence 99999999 8999999974 555566666654111 1121224667889999999899999999999999854
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-37 Score=358.62 Aligned_cols=297 Identities=19% Similarity=0.222 Sum_probs=216.0
Q ss_pred HHHHHHhCCCCCCCcc--chhHHhhCCCeEEEEcCCCChHHHHHHHHHHc--------------CCcEEEEcccHhHHHH
Q 003587 270 FRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFME--------------AKKGIYCSPLRLLAME 333 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~~--~p~~~~l~grdviv~apTGSGKTl~~L~~L~~--------------~~~~LvlsPtR~La~Q 333 (809)
++++|...||..|+++ ..+..+++|+|+|+++|||||||++|+.+++. .+++|||+||++||.|
T Consensus 98 l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q 177 (475)
T PRK01297 98 LMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQ 177 (475)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHH
Confidence 4578889999999983 45666899999999999999999997766542 3578999999999999
Q ss_pred HHHHHHhcC----Cceeeeeccc-ccc----c--ccCcceeeeeeecccC--------CcccEEEEecccccccccchhH
Q 003587 334 VFDKVNALG----VYCSLLTGQE-KKL----V--PFSNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYA 394 (809)
Q Consensus 334 ~~~~l~~~g----~~~~l~~g~~-~~~----~--~~~~~i~~tie~lt~~--------rlv~~vVIDEAH~i~d~~~g~~ 394 (809)
+++.++.+. ..+..++|.. ... . .....+++|++++... ..+++|||||||++.+++|...
T Consensus 178 ~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~ 257 (475)
T PRK01297 178 IAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQ 257 (475)
T ss_pred HHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHH
Confidence 999998763 4444444432 111 1 1234556676654221 1278999999999999888888
Q ss_pred HHHHHhhccc--ccccccCCchHHHHHHHHhhhcC-CceE-------------EeeccccchhhHhHHHHHHHHHhcCCC
Q 003587 395 WTRALLGLMA--DEIHLCGDPSVLDVVRKICSETG-DELH-------------EQHYERFKPLVVEAKTLLGDLRNVRSG 458 (809)
Q Consensus 395 ~~~ill~l~~--~~i~l~~s~~~~~li~~l~~~~~-~~~~-------------~~~~~r~~~l~~~~k~ll~~l~~~~~g 458 (809)
++.++..++. ..+.++.+++....+..+..... .... .+.+..... ......+...+......
T Consensus 258 l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~~~~ 336 (475)
T PRK01297 258 VRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDKYKLLYNLVTQNPWE 336 (475)
T ss_pred HHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhHHHHHHHHHHhcCCC
Confidence 8888877653 34556666664333333322211 1111 111111110 11112333334444445
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCC
Q 003587 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS 536 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~ 536 (809)
++|||+ ++..++.++..|.+. ++.+..+||++++++|.++++.|+ +|+++|||||+++++|||+| |++||++|+
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~R~~~~~~Fr--~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~- 412 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKD-GINAAQLSGDVPQHKRIKTLEGFR--EGKIRVLVATDVAGRGIHIDGISHVINFTL- 412 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-CCCEEEEECCCCHHHHHHHHHHHh--CCCCcEEEEccccccCCcccCCCEEEEeCC-
Confidence 666666 468899999888765 899999999999999999999999 89999999999999999998 999999999
Q ss_pred CCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHH
Q 003587 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~ 582 (809)
|.|+.+|+||+|||||.|. .|.+++|+++++.+..
T Consensus 413 --------P~s~~~y~Qr~GRaGR~g~---~g~~i~~~~~~d~~~~ 447 (475)
T PRK01297 413 --------PEDPDDYVHRIGRTGRAGA---SGVSISFAGEDDAFQL 447 (475)
T ss_pred --------CCCHHHHHHhhCccCCCCC---CceEEEEecHHHHHHH
Confidence 9999999999999999999 8999999987755543
No 32
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-37 Score=335.12 Aligned_cols=300 Identities=19% Similarity=0.236 Sum_probs=219.6
Q ss_pred HhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH-------------cCCcEEEEcccHhHHHHHHHHHH
Q 003587 275 ESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM-------------EAKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 275 ~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~-------------~~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
..+++..||. .+.|+.+++|+|++|-++||||||++|+.++. .+..+|||+||||||.|+|+.+.
T Consensus 153 ~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~q 232 (708)
T KOG0348|consen 153 TKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQ 232 (708)
T ss_pred HHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHH
Confidence 4789999998 34555589999999999999999999988876 24578999999999999999999
Q ss_pred hcCCc------eeeeecccccccccCcceeeeeeecccCCc--------------ccEEEEecccccccccchhHHHHHH
Q 003587 340 ALGVY------CSLLTGQEKKLVPFSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSDACRGYAWTRAL 399 (809)
Q Consensus 340 ~~g~~------~~l~~g~~~~~~~~~~~i~~tie~lt~~rl--------------v~~vVIDEAH~i~d~~~g~~~~~il 399 (809)
++-.+ +.+++|+..........-.+.+.+.||||+ +.++|+||||++++.||+.+++.++
T Consensus 233 KLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il 312 (708)
T KOG0348|consen 233 KLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQIL 312 (708)
T ss_pred HHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHH
Confidence 87443 445555544433333344577888899887 6889999999999999999999998
Q ss_pred hhcc-------------cccccccCCchHHHHHHHHhhhcCCceEEe---------------------------------
Q 003587 400 LGLM-------------ADEIHLCGDPSVLDVVRKICSETGDELHEQ--------------------------------- 433 (809)
Q Consensus 400 l~l~-------------~~~i~l~~s~~~~~li~~l~~~~~~~~~~~--------------------------------- 433 (809)
..+. ...++++-+++..+-+..++.....+.+..
T Consensus 313 ~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~i 392 (708)
T KOG0348|consen 313 KAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAI 392 (708)
T ss_pred HHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccC
Confidence 6662 224566666666666655554322211111
Q ss_pred ------eccccch---hhHhHHHHHHHHHhcCCCCEEEEechhHHHHHHHHH-HH---------------------hcCC
Q 003587 434 ------HYERFKP---LVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAI-EK---------------------HTNH 482 (809)
Q Consensus 434 ------~~~r~~~---l~~~~k~ll~~l~~~~~g~~II~fsrk~~~~l~~~L-~~---------------------~~g~ 482 (809)
.|....+ +..-...|..........+.|||||..+..++-..+ .. ..+.
T Consensus 393 PeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~ 472 (708)
T KOG0348|consen 393 PEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDL 472 (708)
T ss_pred cHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcc
Confidence 1111111 000001122233334455678888765544433332 21 1245
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCC
Q 003587 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561 (809)
Q Consensus 483 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~ 561 (809)
++.-+||+|+|++|..+++.|. .....||.|||+++||||+| |++||.||+ |.+.++|+||+|||.|.
T Consensus 473 k~~rLHGsm~QeeRts~f~~Fs--~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~---------P~s~adylHRvGRTARa 541 (708)
T KOG0348|consen 473 KFYRLHGSMEQEERTSVFQEFS--HSRRAVLLCTDVAARGLDLPHVGLVVQYDP---------PFSTADYLHRVGRTARA 541 (708)
T ss_pred eEEEecCchhHHHHHHHHHhhc--cccceEEEehhhhhccCCCCCcCeEEEeCC---------CCCHHHHHHHhhhhhhc
Confidence 7889999999999999999998 67777999999999999999 999999999 99999999999999999
Q ss_pred CCCCCceEEEEEecccHHHHHHHHcCC
Q 003587 562 GSIYPDGLTTTLNLDDLDYLIECLKQP 588 (809)
Q Consensus 562 G~~~~~G~~i~~~~~d~~~l~~~l~~~ 588 (809)
|. .|.+++|..+.+....+.+...
T Consensus 542 G~---kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 542 GE---KGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred cC---CCceEEEecccHHHHHHHHHhh
Confidence 99 8999999988777777766543
No 33
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-36 Score=342.92 Aligned_cols=300 Identities=17% Similarity=0.165 Sum_probs=216.6
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH-------cCCcEEEEcccHhHHHHHHHHHHh
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM-------EAKKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~-------~~~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
+.+++.+.||..|++ ...+..+++|+|++++||||||||++++.+++ .++++||++||++|+.|+.+.+..
T Consensus 39 ~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 118 (401)
T PTZ00424 39 LLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA 118 (401)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH
Confidence 356788999999999 34566689999999999999999999766544 245789999999999999999887
Q ss_pred cCCc----eeeeeccccc-c----c-ccCcceeeeeeecc--------cCCcccEEEEecccccccccchhHHHHHHhhc
Q 003587 341 LGVY----CSLLTGQEKK-L----V-PFSNHIACTVEMVS--------TDEMYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (809)
Q Consensus 341 ~g~~----~~l~~g~~~~-~----~-~~~~~i~~tie~lt--------~~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l 402 (809)
++.. +....|.... . . .....+++|++.+. ....++++||||||++.+.+|+..+..++..+
T Consensus 119 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~ 198 (401)
T PTZ00424 119 LGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKL 198 (401)
T ss_pred HhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhC
Confidence 7533 3333333211 1 1 11234556664321 11228999999999999988888888888877
Q ss_pred ccccccccCCchHHHHHHHHhhhcCC-ce-------------EEeeccccchhhHhHHHHHHHHHhcCCCCEEEEe-chh
Q 003587 403 MADEIHLCGDPSVLDVVRKICSETGD-EL-------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SRR 467 (809)
Q Consensus 403 ~~~~i~l~~s~~~~~li~~l~~~~~~-~~-------------~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~f-srk 467 (809)
+...+.++.+++....+..+...... .. +.+.+............+...+.......++||+ +++
T Consensus 199 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~ 278 (401)
T PTZ00424 199 PPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRR 278 (401)
T ss_pred CCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcH
Confidence 76666666566544333322221111 00 1111111111111122344444444455666666 578
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccC
Q 003587 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPV 546 (809)
Q Consensus 468 ~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~ 546 (809)
.++.++..|... +..+..+||+|++++|..+++.|+ +|+++|||||+++++|||+| |++||++|+ |.
T Consensus 279 ~~~~l~~~l~~~-~~~~~~~h~~~~~~~R~~i~~~f~--~g~~~vLvaT~~l~~GiDip~v~~VI~~~~---------p~ 346 (401)
T PTZ00424 279 KVDYLTKKMHER-DFTVSCMHGDMDQKDRDLIMREFR--SGSTRVLITTDLLARGIDVQQVSLVINYDL---------PA 346 (401)
T ss_pred HHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHH--cCCCCEEEEcccccCCcCcccCCEEEEECC---------CC
Confidence 899999998875 899999999999999999999999 89999999999999999998 999999999 89
Q ss_pred CHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHH
Q 003587 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (809)
Q Consensus 547 s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~ 584 (809)
+..+|+||+|||||.|. .|.|+.|+++++......
T Consensus 347 s~~~y~qr~GRagR~g~---~G~~i~l~~~~~~~~~~~ 381 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGR---KGVAINFVTPDDIEQLKE 381 (401)
T ss_pred CHHHEeecccccccCCC---CceEEEEEcHHHHHHHHH
Confidence 99999999999999998 899999998765544433
No 34
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=355.39 Aligned_cols=320 Identities=18% Similarity=0.227 Sum_probs=243.7
Q ss_pred hhcCCCCCCChhHHHHHHhhhcCCChhhhhHhhcCCChhhhhhhhhhhHhhhhccCcHHHHHHHHHHHhCCCCCCCc--c
Q 003587 208 VYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHT--W 285 (809)
Q Consensus 208 ~~i~~~~~p~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~llp~f~~~~~~~f~~~l~~i~~~l~~~g~~~Pt~--~ 285 (809)
+.+.+..+|+|+.+|.+..+ ...++..++++||.+|++ .
T Consensus 353 i~v~g~~~pkpv~sW~q~gl---------------------------------------~~~il~tlkkl~y~k~~~IQ~ 393 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGL---------------------------------------SSKILETLKKLGYEKPTPIQA 393 (997)
T ss_pred eeeccCCCCcccchHhhCCc---------------------------------------hHHHHHHHHHhcCCCCcchhh
Confidence 66889999999999988741 112345668999999999 5
Q ss_pred chhHHhhCCCeEEEEcCCCChHHHHHHHHHH------------cCCcEEEEcccHhHHHHHHHHHHhc----CCceee-e
Q 003587 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFM------------EAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSL-L 348 (809)
Q Consensus 286 ~p~~~~l~grdviv~apTGSGKTl~~L~~L~------------~~~~~LvlsPtR~La~Q~~~~l~~~----g~~~~l-~ 348 (809)
++|+.+|.|+|||++|.||||||++++.+++ ++|.+||++|||+||.||.+.++.+ |+.+.+ +
T Consensus 394 qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vy 473 (997)
T KOG0334|consen 394 QAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVY 473 (997)
T ss_pred hhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEec
Confidence 6777799999999999999999999866654 4568899999999999999999887 344333 3
Q ss_pred eccccccc-----ccCcceeeeee----e--cccCCc-----ccEEEEecccccccccchhHHHHHHhhcccccccccCC
Q 003587 349 TGQEKKLV-----PFSNHIACTVE----M--VSTDEM-----YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGD 412 (809)
Q Consensus 349 ~g~~~~~~-----~~~~~i~~tie----~--lt~~rl-----v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s 412 (809)
+|.....+ .....++||+- + ++.+++ +.++|+||||+|.|++|.++.+.++..+++.+++++++
T Consensus 474 gg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfS 553 (997)
T KOG0334|consen 474 GGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFS 553 (997)
T ss_pred CCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhh
Confidence 33322211 11333444431 1 111221 67999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhcCCceEEeec-------------cccch-hhHhHHHHHHHHHh-cCCCCEEEEech-hHHHHHHHHH
Q 003587 413 PSVLDVVRKICSETGDELHEQHY-------------ERFKP-LVVEAKTLLGDLRN-VRSGDCVVAFSR-REIFEVKMAI 476 (809)
Q Consensus 413 ~~~~~li~~l~~~~~~~~~~~~~-------------~r~~~-l~~~~k~ll~~l~~-~~~g~~II~fsr-k~~~~l~~~L 476 (809)
++...-+..++.......+...+ .+..+ .......|++.|.. ...+++|||+++ .+|..+...|
T Consensus 554 atfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 554 ATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred hhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHH
Confidence 98777666665543322111111 01111 11111244444422 346788888864 7899999999
Q ss_pred HHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHH
Q 003587 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555 (809)
Q Consensus 477 ~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~ 555 (809)
.+ .|+.|..+||+.++.+|..+++.|+ ++.+.+||||+++++|+|+. +..|||||+ |...++|+||+
T Consensus 634 ~~-ag~~~~slHGgv~q~dR~sti~dfK--~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~---------pnh~edyvhR~ 701 (997)
T KOG0334|consen 634 QK-AGYNCDSLHGGVDQHDRSSTIEDFK--NGVVNLLVATSVVARGLDVKELILVVNYDF---------PNHYEDYVHRV 701 (997)
T ss_pred Hh-cCcchhhhcCCCchHHHHhHHHHHh--ccCceEEEehhhhhcccccccceEEEEccc---------chhHHHHHHHh
Confidence 96 4999999999999999999999999 89999999999999999996 999999999 98999999999
Q ss_pred cccCCCCCCCCceEEEEEecccHHHH
Q 003587 556 GRAGRRGSIYPDGLTTTLNLDDLDYL 581 (809)
Q Consensus 556 GRAGR~G~~~~~G~~i~~~~~d~~~l 581 (809)
|||||+|+ .|.|++|++++....
T Consensus 702 gRTgragr---kg~AvtFi~p~q~~~ 724 (997)
T KOG0334|consen 702 GRTGRAGR---KGAAVTFITPDQLKY 724 (997)
T ss_pred cccccCCc---cceeEEEeChHHhhh
Confidence 99999999 899999998854443
No 35
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=314.21 Aligned_cols=298 Identities=16% Similarity=0.153 Sum_probs=228.2
Q ss_pred HHHHHhCCCCCCCc----cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHcC-------CcEEEEcccHhHHHHHHHHHH
Q 003587 271 RAMIESADLTKPHT----WFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEA-------KKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~----~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~~-------~~~LvlsPtR~La~Q~~~~l~ 339 (809)
+..+...||++|+| .+|+ ++.|+|+++-|..|+|||.++..++++. -+++|++|||+||.|+.+.+.
T Consensus 97 LmgIfe~G~ekPSPiQeesIPi--aLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~ 174 (459)
T KOG0326|consen 97 LMGIFEKGFEKPSPIQEESIPI--ALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCK 174 (459)
T ss_pred HHHHHHhccCCCCCccccccce--eecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHH
Confidence 34566899999999 4666 6999999999999999999976666532 268999999999999998888
Q ss_pred hcCCce----eeeecccccccc-cCcceeeeeeecccCCc-------------ccEEEEecccccccccchhHHHHHHhh
Q 003587 340 ALGVYC----SLLTGQEKKLVP-FSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSDACRGYAWTRALLG 401 (809)
Q Consensus 340 ~~g~~~----~l~~g~~~~~~~-~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~~~g~~~~~ill~ 401 (809)
.++..+ -+.+|...-... ....-.+.+.+.+|+|. +.++|+||||.+++..|+..+..++..
T Consensus 175 ~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~ 254 (459)
T KOG0326|consen 175 ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISF 254 (459)
T ss_pred HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHh
Confidence 775544 344444332111 11111234566788775 678999999999999999999999999
Q ss_pred cccccccccCCchHHHHHHHHhhhcCCc-------------eEEeeccccchhhHhHHHHHHHHHhcCCCCEEEEe-chh
Q 003587 402 LMADEIHLCGDPSVLDVVRKICSETGDE-------------LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SRR 467 (809)
Q Consensus 402 l~~~~i~l~~s~~~~~li~~l~~~~~~~-------------~~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~f-srk 467 (809)
++..++.++.+++.+-.+..++...... -+.++|.-..+.. .-..+-..+.++.-..+|||| |.+
T Consensus 255 lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~q-KvhCLntLfskLqINQsIIFCNS~~ 333 (459)
T KOG0326|consen 255 LPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSTN 333 (459)
T ss_pred CCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhh-hhhhHHHHHHHhcccceEEEeccch
Confidence 9999999999988766666555443222 1222331111100 001122234455667788888 578
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccC
Q 003587 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPV 546 (809)
Q Consensus 468 ~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~ 546 (809)
.++-+|..+.+. |+.|.++|+.|-++.|.+++..|+ +|.++.|||||.+.||||++ |..|||+|+ |.
T Consensus 334 rVELLAkKITel-GyscyyiHakM~Q~hRNrVFHdFr--~G~crnLVctDL~TRGIDiqavNvVINFDf---------pk 401 (459)
T KOG0326|consen 334 RVELLAKKITEL-GYSCYYIHAKMAQEHRNRVFHDFR--NGKCRNLVCTDLFTRGIDIQAVNVVINFDF---------PK 401 (459)
T ss_pred HhHHHHHHHHhc-cchhhHHHHHHHHhhhhhhhhhhh--ccccceeeehhhhhcccccceeeEEEecCC---------CC
Confidence 999999999874 999999999999999999999999 89999999999999999997 999999999 88
Q ss_pred CHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHc
Q 003587 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586 (809)
Q Consensus 547 s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~ 586 (809)
+.++|.||+||+||+|. -|.++.|++-++......++
T Consensus 402 ~aEtYLHRIGRsGRFGh---lGlAInLityedrf~L~~IE 438 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGH---LGLAINLITYEDRFNLYRIE 438 (459)
T ss_pred CHHHHHHHccCCccCCC---cceEEEEEehhhhhhHHHHH
Confidence 99999999999999999 89999999866655444443
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-35 Score=355.07 Aligned_cols=291 Identities=21% Similarity=0.251 Sum_probs=208.7
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH----c--CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----E--AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~--~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
+.++|+..||++|++ ...++.+++|+|+++++|||||||++++.+++ . +.++||++|||+||.|+++.++++
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 457888999999998 34555689999999999999999999766554 2 357899999999999999999987
Q ss_pred C---Cceeeeeccccccc-----ccCcceeeeeeecccC------------CcccEEEEecccccccccchhHHHHHHhh
Q 003587 342 G---VYCSLLTGQEKKLV-----PFSNHIACTVEMVSTD------------EMYDVAVIDEIQMMSDACRGYAWTRALLG 401 (809)
Q Consensus 342 g---~~~~l~~g~~~~~~-----~~~~~i~~tie~lt~~------------rlv~~vVIDEAH~i~d~~~g~~~~~ill~ 401 (809)
+ +.+..++|+..... .....+++|++++... ..+++|||||||++.+. ||..+..++..
T Consensus 105 ~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-fg~~~~~il~r 183 (742)
T TIGR03817 105 TLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-FGSHVALVLRR 183 (742)
T ss_pred ccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-cHHHHHHHHHH
Confidence 4 45666777654321 1234456677765421 12799999999999874 88776555433
Q ss_pred c-------ccccccccCCchHHHHHHHHhhhcCCceEEe----------eccccchh----------------hHhHHHH
Q 003587 402 L-------MADEIHLCGDPSVLDVVRKICSETGDELHEQ----------HYERFKPL----------------VVEAKTL 448 (809)
Q Consensus 402 l-------~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~----------~~~r~~~l----------------~~~~k~l 448 (809)
+ ....+.++.++|..+..+......+...... .+....+. ..+...+
T Consensus 184 L~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~ 263 (742)
T TIGR03817 184 LRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADL 263 (742)
T ss_pred HHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHH
Confidence 3 3345566666654332221111111111100 00000010 1112233
Q ss_pred HHHHHhcCCCCEEEEe-chhHHHHHHHHHHHh-------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccc
Q 003587 449 LGDLRNVRSGDCVVAF-SRREIFEVKMAIEKH-------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520 (809)
Q Consensus 449 l~~l~~~~~g~~II~f-srk~~~~l~~~L~~~-------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~ 520 (809)
+..+... ...+|||+ |++.++.++..|.+. .+.++..|||++++++|.+++++|+ +|++++|||||+++
T Consensus 264 l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~--~G~i~vLVaTd~le 340 (742)
T TIGR03817 264 LADLVAE-GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR--DGELLGVATTNALE 340 (742)
T ss_pred HHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH--cCCceEEEECchHh
Confidence 3333332 34566666 678999999887653 2568899999999999999999999 89999999999999
Q ss_pred cccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 521 MGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 521 ~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+||||| |++||++|+ |.++++|+||+|||||.|. .|.++++..+
T Consensus 341 rGIDI~~vd~VI~~~~---------P~s~~~y~qRiGRaGR~G~---~g~ai~v~~~ 385 (742)
T TIGR03817 341 LGVDISGLDAVVIAGF---------PGTRASLWQQAGRAGRRGQ---GALVVLVARD 385 (742)
T ss_pred ccCCcccccEEEEeCC---------CCCHHHHHHhccccCCCCC---CcEEEEEeCC
Confidence 999998 999999999 9999999999999999999 8999999864
No 37
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2e-36 Score=317.12 Aligned_cols=350 Identities=21% Similarity=0.254 Sum_probs=254.7
Q ss_pred hhhccCc--HHHHHHHHHHHhCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHH-HHHHHHcCCcEEEEcccHhHHHHH
Q 003587 258 FCIEEFP--DEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEV 334 (809)
Q Consensus 258 ~~~~~f~--~~l~~i~~~l~~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~-~L~~L~~~~~~LvlsPtR~La~Q~ 334 (809)
|.+..|| +....|++....+.--+|-+.-++...|.|++++++.|||.||++| +|++|...|-+||++|+..|+.++
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedq 150 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQ 150 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHH
Confidence 4455555 2333333333333334555555666789999999999999999999 799999999999999999999999
Q ss_pred HHHHHhcCCceeeeeccccccc------------ccCcceeeeeeecccC-------------CcccEEEEecccccccc
Q 003587 335 FDKVNALGVYCSLLTGQEKKLV------------PFSNHIACTVEMVSTD-------------EMYDVAVIDEIQMMSDA 389 (809)
Q Consensus 335 ~~~l~~~g~~~~l~~g~~~~~~------------~~~~~i~~tie~lt~~-------------rlv~~vVIDEAH~i~d~ 389 (809)
.-.++.+|+....++....... ..-..+++|++.+... +.+.++.|||+||.++
T Consensus 151 il~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsq- 229 (695)
T KOG0353|consen 151 ILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQ- 229 (695)
T ss_pred HHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhh-
Confidence 9999999999887765543311 1223456676644322 1278999999999997
Q ss_pred cchhHHHHHHhhccc--------ccccccCCc--hHHHHHHHHhhhcCCceEEeeccccc--------hhhHh--HHHHH
Q 003587 390 CRGYAWTRALLGLMA--------DEIHLCGDP--SVLDVVRKICSETGDELHEQHYERFK--------PLVVE--AKTLL 449 (809)
Q Consensus 390 ~~g~~~~~ill~l~~--------~~i~l~~s~--~~~~li~~l~~~~~~~~~~~~~~r~~--------~l~~~--~k~ll 449 (809)
||++|++.|..|.- ..+-+++++ .+++.++++.-....-.+...|.|.+ |-..+ ...+.
T Consensus 230 -wghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~ 308 (695)
T KOG0353|consen 230 -WGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIA 308 (695)
T ss_pred -hCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHH
Confidence 89999977654422 123333333 35555555543322223333444332 11111 12333
Q ss_pred HHHHhcCC--CCEEEEechhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-
Q 003587 450 GDLRNVRS--GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN- 526 (809)
Q Consensus 450 ~~l~~~~~--g~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip- 526 (809)
..+..... ..+|+||++++|+.++..|... |+.+..||+.|.|++|.-+.+.|. .|+++|+|||-++|||||.|
T Consensus 309 k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~-gi~a~~yha~lep~dks~~hq~w~--a~eiqvivatvafgmgidkpd 385 (695)
T KOG0353|consen 309 KLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH-GIHAGAYHANLEPEDKSGAHQGWI--AGEIQVIVATVAFGMGIDKPD 385 (695)
T ss_pred HHhccccCCCcceEEEeccccHHHHHHHHHhc-CccccccccccCcccccccccccc--ccceEEEEEEeeecccCCCCC
Confidence 33433333 3578999999999999999885 999999999999999999999998 89999999999999999998
Q ss_pred ccEEEEcCCCCCCCCCcccCCHhHHHH-------------------------------------------HHcccCCCCC
Q 003587 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQ-------------------------------------------IAGRAGRRGS 563 (809)
Q Consensus 527 V~~VI~~d~~K~dg~~~~P~s~~~y~Q-------------------------------------------r~GRAGR~G~ 563 (809)
|++|||..+ |.|++.|+| ..|||||++.
T Consensus 386 vrfvihhsl---------~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~ 456 (695)
T KOG0353|consen 386 VRFVIHHSL---------PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM 456 (695)
T ss_pred eeEEEeccc---------chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC
Confidence 999999999 889999999 8999999999
Q ss_pred CCCceEEEEEec-ccHHHHHHHHcCCchHHHHhcCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccC
Q 003587 564 IYPDGLTTTLNL-DDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630 (809)
Q Consensus 564 ~~~~G~~i~~~~-~d~~~l~~~l~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~ 630 (809)
...|+++|. .|.-.+-.++.. +..++ ..+..|..||.....|++..+.++|.|.....
T Consensus 457 ---~a~cilyy~~~difk~ssmv~~-----e~~g~-q~ly~mv~y~~d~s~crrv~laehfde~w~~~ 515 (695)
T KOG0353|consen 457 ---KADCILYYGFADIFKISSMVQM-----ENTGI-QKLYEMVRYAADISKCRRVKLAEHFDEAWEPE 515 (695)
T ss_pred ---cccEEEEechHHHHhHHHHHHH-----HhhhH-HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHH
Confidence 899999996 343333334332 23333 34677999999999999999999999987553
No 38
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=322.05 Aligned_cols=290 Identities=17% Similarity=0.213 Sum_probs=205.3
Q ss_pred HHHHHHhCCCCCCCcc--chhHHhhCC-CeEEEEcCCCChHHHHHHHHHHc------------------CCc--EEEEcc
Q 003587 270 FRAMIESADLTKPHTW--FPFARVMKR-KIIYHCGPTNSGKTYNALQRFME------------------AKK--GIYCSP 326 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~~--~p~~~~l~g-rdviv~apTGSGKTl~~L~~L~~------------------~~~--~LvlsP 326 (809)
++.+|..+||..||+. ..++.++.| .||++.|.||||||++|-.+++. .++ +||++|
T Consensus 192 iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tP 271 (731)
T KOG0347|consen 192 ILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTP 271 (731)
T ss_pred HHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecC
Confidence 4578999999999993 334457888 79999999999999995444432 224 899999
Q ss_pred cHhHHHHHHHHHHhc----CCceeeeecccc-cccccCcceeeeeeecccCCc----------------ccEEEEecccc
Q 003587 327 LRLLAMEVFDKVNAL----GVYCSLLTGQEK-KLVPFSNHIACTVEMVSTDEM----------------YDVAVIDEIQM 385 (809)
Q Consensus 327 tR~La~Q~~~~l~~~----g~~~~l~~g~~~-~~~~~~~~i~~tie~lt~~rl----------------v~~vVIDEAH~ 385 (809)
||+||.|+.+.+... ++.+..++|... ..+..-..-...+.++||||+ +.++||||||+
T Consensus 272 TRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDR 351 (731)
T KOG0347|consen 272 TRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADR 351 (731)
T ss_pred hHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHH
Confidence 999999999999876 444444444422 111100001234566777775 79999999999
Q ss_pred cccccchhHHHHHHhhcc-----cccccccCCchHH---------------------HHHHHHhhhcC---CceEEeecc
Q 003587 386 MSDACRGYAWTRALLGLM-----ADEIHLCGDPSVL---------------------DVVRKICSETG---DELHEQHYE 436 (809)
Q Consensus 386 i~d~~~g~~~~~ill~l~-----~~~i~l~~s~~~~---------------------~li~~l~~~~~---~~~~~~~~~ 436 (809)
|.+.|.-..++.++.-|. ..++++.++++.. ..++.++...+ ...++.
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD--- 428 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIID--- 428 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEe---
Confidence 999877667777776654 2356666655421 11112222111 111111
Q ss_pred ccchhhHhHHHHHHH---------------HHhcCCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH
Q 003587 437 RFKPLVVEAKTLLGD---------------LRNVRSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQA 500 (809)
Q Consensus 437 r~~~l~~~~k~ll~~---------------l~~~~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~ 500 (809)
.++-......+.+. +....+|..+||++. ..+..++-.|.. .++...++|+.|.|..|.+.+
T Consensus 429 -~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~-L~i~p~~LHA~M~QKqRLknL 506 (731)
T KOG0347|consen 429 -LTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNN-LDIPPLPLHASMIQKQRLKNL 506 (731)
T ss_pred -cCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhh-cCCCCchhhHHHHHHHHHHhH
Confidence 11110011112221 223467888888865 555667766665 599999999999999999999
Q ss_pred HHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccH
Q 003587 501 NLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578 (809)
Q Consensus 501 ~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~ 578 (809)
+.|+ +....||||||+++|||||| |.+||||.. |.+.+-|+||.|||+|++. .|..+.|+.+..
T Consensus 507 EkF~--~~~~~VLiaTDVAARGLDIp~V~HVIHYqV---------PrtseiYVHRSGRTARA~~---~Gvsvml~~P~e 571 (731)
T KOG0347|consen 507 EKFK--QSPSGVLIATDVAARGLDIPGVQHVIHYQV---------PRTSEIYVHRSGRTARANS---EGVSVMLCGPQE 571 (731)
T ss_pred HHHh--cCCCeEEEeehhhhccCCCCCcceEEEeec---------CCccceeEecccccccccC---CCeEEEEeChHH
Confidence 9999 78889999999999999999 999999999 9999999999999999999 899999997654
No 39
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=315.45 Aligned_cols=297 Identities=15% Similarity=0.190 Sum_probs=216.0
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc------------CCcEEEEcccHhHHHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME------------AKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~------------~~~~LvlsPtR~La~Q~~ 335 (809)
+++.+...+|..|++ .+.++-.++++++++|||||||||++++.+++. +-+++|++|+|+||.|++
T Consensus 147 ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~ 226 (593)
T KOG0344|consen 147 LLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIY 226 (593)
T ss_pred HHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHH
Confidence 346677899999999 344445799999999999999999997666651 236799999999999999
Q ss_pred HHHHhcCCc--eee----eecccccccccC--cceeeeeeecccCC---------------cccEEEEecccccccc-cc
Q 003587 336 DKVNALGVY--CSL----LTGQEKKLVPFS--NHIACTVEMVSTDE---------------MYDVAVIDEIQMMSDA-CR 391 (809)
Q Consensus 336 ~~l~~~g~~--~~l----~~g~~~~~~~~~--~~i~~tie~lt~~r---------------lv~~vVIDEAH~i~d~-~~ 391 (809)
.++.++.+. .+. ........+..+ ....+.+.+.||.+ .+.++|+||||++.+. .|
T Consensus 227 re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f 306 (593)
T KOG0344|consen 227 REMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFF 306 (593)
T ss_pred HHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhH
Confidence 999998643 111 111111111100 00111122222221 1789999999999988 78
Q ss_pred hhHHHHHHhhcccccccc-cCCchHHHHHHHHhhhcCCceEEeeccccchh--hHhH------------HHHHHHHHhcC
Q 003587 392 GYAWTRALLGLMADEIHL-CGDPSVLDVVRKICSETGDELHEQHYERFKPL--VVEA------------KTLLGDLRNVR 456 (809)
Q Consensus 392 g~~~~~ill~l~~~~i~l-~~s~~~~~li~~l~~~~~~~~~~~~~~r~~~l--~~~~------------k~ll~~l~~~~ 456 (809)
-.++-.+|..+....+++ +++++....++.++...........+...+.. .++. -.+.+.+...-
T Consensus 307 ~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~ 386 (593)
T KOG0344|consen 307 VEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF 386 (593)
T ss_pred HHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC
Confidence 888888888887766654 56677666666666655544433333221110 1111 13334444444
Q ss_pred CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccc-cccEEEEcC
Q 003587 457 SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVVFYS 534 (809)
Q Consensus 457 ~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDi-pV~~VI~~d 534 (809)
+...+||. +...+.+|...|....++.+.++||..++.+|+..+++|+ .|+++|||||++++||||+ +|+.|||||
T Consensus 387 ~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR--~g~IwvLicTdll~RGiDf~gvn~VInyD 464 (593)
T KOG0344|consen 387 KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFR--IGKIWVLICTDLLARGIDFKGVNLVINYD 464 (593)
T ss_pred CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHh--ccCeeEEEehhhhhccccccCcceEEecC
Confidence 55556666 6789999999996556899999999999999999999999 8999999999999999999 699999999
Q ss_pred CCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH
Q 003587 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
. |.+..+|+||+||+||+|+ .|.+|+||++++-.
T Consensus 465 ~---------p~s~~syihrIGRtgRag~---~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 465 F---------PQSDLSYIHRIGRTGRAGR---SGKAITFYTDQDMP 498 (593)
T ss_pred C---------CchhHHHHHHhhccCCCCC---CcceEEEeccccch
Confidence 9 9999999999999999999 89999999875433
No 40
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-34 Score=297.95 Aligned_cols=297 Identities=18% Similarity=0.238 Sum_probs=224.4
Q ss_pred HHHHHHhCCCCCCCc----cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH-------cCCcEEEEcccHhHHHHHHHHH
Q 003587 270 FRAMIESADLTKPHT----WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM-------EAKKGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~----~~p~~~~l~grdviv~apTGSGKTl~~L~~L~-------~~~~~LvlsPtR~La~Q~~~~l 338 (809)
+++.+..++|.+|+. +.|+-..--.+++|..+..|+|||.|+...++ .-|.++.|+|||+||.|+.+.+
T Consensus 101 llkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv 180 (477)
T KOG0332|consen 101 LLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV 180 (477)
T ss_pred HHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH
Confidence 356788899999998 44553333568999999999999999766665 3468899999999999999999
Q ss_pred HhcCCceeeeeccccccc--ccCcceeeeeeecccCCc--------------ccEEEEeccccccc-ccchhHHHHHHhh
Q 003587 339 NALGVYCSLLTGQEKKLV--PFSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSD-ACRGYAWTRALLG 401 (809)
Q Consensus 339 ~~~g~~~~l~~g~~~~~~--~~~~~i~~tie~lt~~rl--------------v~~vVIDEAH~i~d-~~~g~~~~~ill~ 401 (809)
.+.|..+.+......++. .....+...+.+-+|+.. +.++|+|||+.|.+ .||+.+-.+++..
T Consensus 181 ~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~ 260 (477)
T KOG0332|consen 181 EEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRS 260 (477)
T ss_pred HHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhh
Confidence 999988865444333221 222233333344444422 78999999998876 4678888899999
Q ss_pred cccccccccCCchHHHHHHHHhhhcCCceEEeeccc-------------cchhhH-hHHHHHHHHHhcCCCCEEEEe-ch
Q 003587 402 LMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER-------------FKPLVV-EAKTLLGDLRNVRSGDCVVAF-SR 466 (809)
Q Consensus 402 l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~r-------------~~~l~~-~~k~ll~~l~~~~~g~~II~f-sr 466 (809)
++...+.++++++..+-+..++.....+-......+ ..+... ....+.+......-|..|||+ ++
T Consensus 261 lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk 340 (477)
T KOG0332|consen 261 LPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTK 340 (477)
T ss_pred cCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeeh
Confidence 998888888999887776666654433211111110 111111 112334433334457777777 78
Q ss_pred hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCC-CCCCCCcc
Q 003587 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS-KYNGDKII 544 (809)
Q Consensus 467 k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~-K~dg~~~~ 544 (809)
+.+..++..+.+. |+.|..+||.|.-++|..+++.|+ .|..+|||+|++++||||++ |..|||||++ ||+|.
T Consensus 341 ~ta~~l~~~m~~~-Gh~V~~l~G~l~~~~R~~ii~~Fr--~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~--- 414 (477)
T KOG0332|consen 341 ATAMWLYEEMRAE-GHQVSLLHGDLTVEQRAAIIDRFR--EGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGE--- 414 (477)
T ss_pred hhHHHHHHHHHhc-CceeEEeeccchhHHHHHHHHHHh--cCcceEEEEechhhcccccceEEEEEecCCccccCCC---
Confidence 9999999999986 999999999999999999999999 89999999999999999998 9999999976 68776
Q ss_pred cCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 545 PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 545 P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
| +.+.|+||+|||||+|+ .|.++.|+.+
T Consensus 415 p-D~etYlHRiGRtGRFGk---kG~a~n~v~~ 442 (477)
T KOG0332|consen 415 P-DYETYLHRIGRTGRFGK---KGLAINLVDD 442 (477)
T ss_pred C-CHHHHHHHhcccccccc---cceEEEeecc
Confidence 4 89999999999999999 8999999864
No 41
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=307.91 Aligned_cols=298 Identities=18% Similarity=0.246 Sum_probs=224.6
Q ss_pred HHHHHHHhCCCCCCCc----cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH-------------cCCcEEEEcccHhHH
Q 003587 269 RFRAMIESADLTKPHT----WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM-------------EAKKGIYCSPLRLLA 331 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~----~~p~~~~l~grdviv~apTGSGKTl~~L~~L~-------------~~~~~LvlsPtR~La 331 (809)
++++++.+.||.+||. +||+ +++|+|+++.|.||||||.+|+.+++ .++.++|++||||||
T Consensus 29 RllkAi~~lG~ekpTlIQs~aIpl--aLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~ 106 (569)
T KOG0346|consen 29 RLLKAITKLGWEKPTLIQSSAIPL--ALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELA 106 (569)
T ss_pred HHHHHHHHhCcCCcchhhhcccch--hhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHH
Confidence 6778999999999998 5666 79999999999999999999888776 245789999999999
Q ss_pred HHHHHHHHhcCCceee------eeccccccc-----ccCc-ceeeee----eecccC-----CcccEEEEeccccccccc
Q 003587 332 MEVFDKVNALGVYCSL------LTGQEKKLV-----PFSN-HIACTV----EMVSTD-----EMYDVAVIDEIQMMSDAC 390 (809)
Q Consensus 332 ~Q~~~~l~~~g~~~~l------~~g~~~~~~-----~~~~-~i~~ti----e~lt~~-----rlv~~vVIDEAH~i~d~~ 390 (809)
+|++..+.++-..|+. ++......+ ...+ .++.|+ .++..+ ..++++|+||||.++.-|
T Consensus 107 qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfG 186 (569)
T KOG0346|consen 107 QQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFG 186 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcc
Confidence 9999999887444431 111111111 1122 223333 111111 127999999999999999
Q ss_pred chhHHHHHHhhcccccccccCCchHHHHHHHHhhhcCCceEEe--------------eccccchhhHhHHHHHHHH--Hh
Q 003587 391 RGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQ--------------HYERFKPLVVEAKTLLGDL--RN 454 (809)
Q Consensus 391 ~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~--------------~~~r~~~l~~~~k~ll~~l--~~ 454 (809)
+..++..+...+|...+.++.+++..+.+..+........++- .|.-... ..+.-.++..+ .+
T Consensus 187 Yeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKflllyallKL~ 265 (569)
T KOG0346|consen 187 YEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLLLYALLKLR 265 (569)
T ss_pred cHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHHHHHHHHHH
Confidence 9999999999999999999999998887776655433222211 1111111 11111222222 23
Q ss_pred cCCCCEEEEec-hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecc----------------
Q 003587 455 VRSGDCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD---------------- 517 (809)
Q Consensus 455 ~~~g~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATd---------------- 517 (809)
.-.|+++||.+ -..|..+.-.|++. |++.+++.|.||...|..++++|+ .|-++||||||
T Consensus 266 LI~gKsliFVNtIdr~YrLkLfLeqF-GiksciLNseLP~NSR~Hii~QFN--kG~YdivIAtD~s~~~~~~eee~kgk~ 342 (569)
T KOG0346|consen 266 LIRGKSLIFVNTIDRCYRLKLFLEQF-GIKSCILNSELPANSRCHIIEQFN--KGLYDIVIATDDSADGDKLEEEVKGKS 342 (569)
T ss_pred HhcCceEEEEechhhhHHHHHHHHHh-CcHhhhhcccccccchhhHHHHhh--CcceeEEEEccCccchhhhhccccccc
Confidence 44688888885 58899999999874 999999999999999999999999 89999999999
Q ss_pred -------------------ccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 518 -------------------AVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 518 -------------------al~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
-.+||||+- |..|||+|+ |.+...|+||+|||+|++. .|.+++|+.++
T Consensus 343 ~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~---------P~t~~sYIHRvGRTaRg~n---~GtalSfv~P~ 410 (569)
T KOG0346|consen 343 DEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF---------PETVTSYIHRVGRTARGNN---KGTALSFVSPK 410 (569)
T ss_pred cccCCCCccccccccCchhchhccccchheeeeeecCC---------CCchHHHHHhccccccCCC---CCceEEEecch
Confidence 256999995 999999999 9999999999999999999 89999999887
Q ss_pred HHHHHHH
Q 003587 578 LDYLIEC 584 (809)
Q Consensus 578 ~~~l~~~ 584 (809)
...-...
T Consensus 411 e~~g~~~ 417 (569)
T KOG0346|consen 411 EEFGKES 417 (569)
T ss_pred HHhhhhH
Confidence 6654333
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.3e-33 Score=336.87 Aligned_cols=318 Identities=24% Similarity=0.305 Sum_probs=217.4
Q ss_pred HHHHHhCCCCCCCccc--hhHH-hhCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhc--
Q 003587 271 RAMIESADLTKPHTWF--PFAR-VMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNAL-- 341 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~~~--p~~~-~l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~-- 341 (809)
+++++..||.+|+|++ .+.. +++|++++++||||||||+++..+++ .++++|||+|+++||.|+++.++.+
T Consensus 13 ~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~ 92 (737)
T PRK02362 13 IEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEE 92 (737)
T ss_pred HHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhc
Confidence 4678889999999854 2333 67899999999999999999655543 5789999999999999999999887
Q ss_pred -CCceeeeeccccccc---ccCcceeeeeeeccc------C--CcccEEEEecccccccccchhHHHHHHhhcc---ccc
Q 003587 342 -GVYCSLLTGQEKKLV---PFSNHIACTVEMVST------D--EMYDVAVIDEIQMMSDACRGYAWTRALLGLM---ADE 406 (809)
Q Consensus 342 -g~~~~l~~g~~~~~~---~~~~~i~~tie~lt~------~--rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~---~~~ 406 (809)
|..+.+++|+..... .....+++|++.+.. . ..++++||||||++.+.++|..+..++..+. ...
T Consensus 93 ~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~ 172 (737)
T PRK02362 93 LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDL 172 (737)
T ss_pred CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCC
Confidence 778888888654321 224456677654311 1 1289999999999999999999887765442 333
Q ss_pred ccccCCchHHHHHHHHhhhcCCce----------EEeec--cc------cchhhHh-HHHHHHHHHh--cCCCCEEEEe-
Q 003587 407 IHLCGDPSVLDVVRKICSETGDEL----------HEQHY--ER------FKPLVVE-AKTLLGDLRN--VRSGDCVVAF- 464 (809)
Q Consensus 407 i~l~~s~~~~~li~~l~~~~~~~~----------~~~~~--~r------~~~l~~~-~k~ll~~l~~--~~~g~~II~f- 464 (809)
+.+..+++..+ ...++.+.+... ....+ .. ....... ....+..+.. ...++++||+
T Consensus 173 qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~ 251 (737)
T PRK02362 173 QVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVS 251 (737)
T ss_pred cEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEe
Confidence 33334444311 122222222111 11000 00 0000000 0111111111 1345666766
Q ss_pred chhHHHHHHHHHHHhc-----------------------------------CCeEEEEeCCCCHHHHHHHHHHhhcCCCC
Q 003587 465 SRREIFEVKMAIEKHT-----------------------------------NHHCCVIYGALPPETRRQQANLFNDQDNE 509 (809)
Q Consensus 465 srk~~~~l~~~L~~~~-----------------------------------g~~v~~lhg~l~~~~R~~~~~~F~~~~g~ 509 (809)
+++.|+.++..|.+.. ...|+++||+|++++|..+++.|+ +|.
T Consensus 252 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr--~G~ 329 (737)
T PRK02362 252 SRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFR--DRL 329 (737)
T ss_pred CHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHH--cCC
Confidence 5788888887775421 146899999999999999999999 899
Q ss_pred eEEEEecccccccccccccEEEEcCCCCCCCC-CcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccH---HHHHHHH
Q 003587 510 FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL---DYLIECL 585 (809)
Q Consensus 510 ~~ILVATdal~~GIDipV~~VI~~d~~K~dg~-~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~---~~l~~~l 585 (809)
++|||||+++++|||+|...||..+..+||+. +..|.+..+|+||+|||||.|. .+.|.|+.+..... ....+++
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~-d~~G~~ii~~~~~~~~~~~~~~~l 408 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGL-DPYGEAVLLAKSYDELDELFERYI 408 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCC-CCCceEEEEecCchhHHHHHHHHH
Confidence 99999999999999999666777777778765 4679999999999999999996 34699999996542 2334566
Q ss_pred cCCchHH
Q 003587 586 KQPFEVV 592 (809)
Q Consensus 586 ~~~~~~~ 592 (809)
....+++
T Consensus 409 ~~~~~~i 415 (737)
T PRK02362 409 WADPEDV 415 (737)
T ss_pred hCCCCce
Confidence 5444333
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.7e-32 Score=326.18 Aligned_cols=316 Identities=23% Similarity=0.310 Sum_probs=215.4
Q ss_pred HHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhc---
Q 003587 271 RAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNAL--- 341 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~--- 341 (809)
.+.+...+|. +++ ...+..+.+|++++++||||||||++++.++. .++++||++|+++||.|+++.+.++
T Consensus 13 ~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~ 91 (674)
T PRK01172 13 LNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL 91 (674)
T ss_pred HHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc
Confidence 3566677876 666 33455578999999999999999999665544 4788999999999999999988754
Q ss_pred CCceeeeeccccccc---ccCcceeeeeeecc----cC----CcccEEEEecccccccccchhHHHHHHhhc---ccccc
Q 003587 342 GVYCSLLTGQEKKLV---PFSNHIACTVEMVS----TD----EMYDVAVIDEIQMMSDACRGYAWTRALLGL---MADEI 407 (809)
Q Consensus 342 g~~~~l~~g~~~~~~---~~~~~i~~tie~lt----~~----rlv~~vVIDEAH~i~d~~~g~~~~~ill~l---~~~~i 407 (809)
|..+.+.+|+..... .....+++|++.+. .. ..++++||||||++.+.++|..+..++..+ .....
T Consensus 92 g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~r 171 (674)
T PRK01172 92 GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDAR 171 (674)
T ss_pred CCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCc
Confidence 677777777543221 22345566664321 11 128999999999999999999888765433 22222
Q ss_pred cccCCchHHHHHHHHhhhcCCceEEeeccccchh----------hH-----hHHHHHHHHHh--cCCCCEEEEe-chhHH
Q 003587 408 HLCGDPSVLDVVRKICSETGDELHEQHYERFKPL----------VV-----EAKTLLGDLRN--VRSGDCVVAF-SRREI 469 (809)
Q Consensus 408 ~l~~s~~~~~li~~l~~~~~~~~~~~~~~r~~~l----------~~-----~~k~ll~~l~~--~~~g~~II~f-srk~~ 469 (809)
.+..+++..+ ...++.+.+...+...+ +..++ .. ....+...+.. ...++++||+ +++.+
T Consensus 172 iI~lSATl~n-~~~la~wl~~~~~~~~~-r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~ 249 (674)
T PRK01172 172 ILALSATVSN-ANELAQWLNASLIKSNF-RPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNA 249 (674)
T ss_pred EEEEeCccCC-HHHHHHHhCCCccCCCC-CCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHH
Confidence 3333444321 22233332222111111 00000 00 00011222222 2345666666 57889
Q ss_pred HHHHHHHHHhc------------------------CCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccc
Q 003587 470 FEVKMAIEKHT------------------------NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525 (809)
Q Consensus 470 ~~l~~~L~~~~------------------------g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDi 525 (809)
+.++..|.+.. ...+.++||+|++++|..+++.|+ +|.++|||||+++++|||+
T Consensus 250 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~--~g~i~VLvaT~~la~Gvni 327 (674)
T PRK01172 250 EDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR--NRYIKVIVATPTLAAGVNL 327 (674)
T ss_pred HHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH--cCCCeEEEecchhhccCCC
Confidence 88888876421 135889999999999999999999 8999999999999999999
Q ss_pred cccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc--cHHHHHHHHcCCchHH
Q 003587 526 NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD--DLDYLIECLKQPFEVV 592 (809)
Q Consensus 526 pV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~--d~~~l~~~l~~~~~~~ 592 (809)
|.+.||+.|.++|++....|.++.+|.||+|||||.|. ...|.++++... +...+.+++....+++
T Consensus 328 pa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~-d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi 395 (674)
T PRK01172 328 PARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY-DQYGIGYIYAASPASYDAAKKYLSGEPEPV 395 (674)
T ss_pred cceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC-CCcceEEEEecCcccHHHHHHHHcCCCCce
Confidence 98899999999998888889999999999999999995 346777777643 3466677775544433
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-31 Score=324.13 Aligned_cols=352 Identities=18% Similarity=0.205 Sum_probs=227.4
Q ss_pred HHHHHHhCCCCCCCccc--hhH-HhhCCCeEEEEcCCCChHHHHHHHHHH-----cCCcEEEEcccHhHHHHHHHHHHh-
Q 003587 270 FRAMIESADLTKPHTWF--PFA-RVMKRKIIYHCGPTNSGKTYNALQRFM-----EAKKGIYCSPLRLLAMEVFDKVNA- 340 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~~~--p~~-~~l~grdviv~apTGSGKTl~~L~~L~-----~~~~~LvlsPtR~La~Q~~~~l~~- 340 (809)
+.+.++..||++|++++ .+. .+++|++++++||||||||+++..+++ .++++|||+|+++||.|+++++..
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~ 91 (720)
T PRK00254 12 IKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW 91 (720)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH
Confidence 35678889999999843 332 268999999999999999999755443 467899999999999999988875
Q ss_pred --cCCceeeeeccccccc---ccCcceeeeeeeccc----C----CcccEEEEecccccccccchhHHHHHHhhcccccc
Q 003587 341 --LGVYCSLLTGQEKKLV---PFSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEI 407 (809)
Q Consensus 341 --~g~~~~l~~g~~~~~~---~~~~~i~~tie~lt~----~----rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i 407 (809)
+|..+..++|+..... .....+++|++.+.. . ..++++||||+|++.+.++|..+..++..+....+
T Consensus 92 ~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~q 171 (720)
T PRK00254 92 EKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ 171 (720)
T ss_pred hhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCc
Confidence 4777888888654321 123445566654321 0 12899999999999999999999888877765554
Q ss_pred cccCCchHHHHHHHHhhhcCCceEE--------------eeccccchh------hHhHHHHHHHHHhcCCCCEEEEe-ch
Q 003587 408 HLCGDPSVLDVVRKICSETGDELHE--------------QHYERFKPL------VVEAKTLLGDLRNVRSGDCVVAF-SR 466 (809)
Q Consensus 408 ~l~~s~~~~~li~~l~~~~~~~~~~--------------~~~~r~~~l------~~~~k~ll~~l~~~~~g~~II~f-sr 466 (809)
.+..+++..+ ...++.+.+...+. +.+...... ......+.+.+. ..+.++||+ +|
T Consensus 172 iI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr 248 (720)
T PRK00254 172 ILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTR 248 (720)
T ss_pred EEEEEccCCC-HHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcCh
Confidence 4544554321 12222322221111 010000000 000112222232 234556665 57
Q ss_pred hHHHHHHHHHHHh--------------------------------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEE
Q 003587 467 REIFEVKMAIEKH--------------------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514 (809)
Q Consensus 467 k~~~~l~~~L~~~--------------------------------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILV 514 (809)
+.++.++..|.+. ....|.++||+|++++|..+++.|+ +|.++|||
T Consensus 249 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~--~G~i~VLv 326 (720)
T PRK00254 249 RSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFR--EGLIKVIT 326 (720)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHH--CCCCeEEE
Confidence 7777766555321 2346999999999999999999999 89999999
Q ss_pred ecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccH--HHHHHHHcCCchHH
Q 003587 515 ASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL--DYLIECLKQPFEVV 592 (809)
Q Consensus 515 ATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~--~~l~~~l~~~~~~~ 592 (809)
||+++++|+|+|...||..+..+|++.+..+.++.+|.||+|||||.|. ...|.++.+...+. ..+.+++....+++
T Consensus 327 aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~-d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l 405 (720)
T PRK00254 327 ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY-DEVGEAIIVATTEEPSKLMERYIFGKPEKL 405 (720)
T ss_pred eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc-CCCceEEEEecCcchHHHHHHHHhCCchhh
Confidence 9999999999995556666666676555666788999999999999874 34799999986432 33445555443333
Q ss_pred HHh-cCC-CcHHHHHHHHhcCccchHHHHHHHHhhhc
Q 003587 593 KKV-GLF-PFFEQVELFAGQLSNYTFCQLLEKFGENC 627 (809)
Q Consensus 593 ~~~-~~~-p~~~~l~~~~~~~~~~~~~~ll~~f~e~~ 627 (809)
... ... ....++..........+.+++++++..++
T Consensus 406 ~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf 442 (720)
T PRK00254 406 FSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTF 442 (720)
T ss_pred hccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCH
Confidence 211 110 00122222222223355666666665543
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-31 Score=327.78 Aligned_cols=357 Identities=18% Similarity=0.229 Sum_probs=222.0
Q ss_pred CCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc-------------CCcEEEEcccHhHHHHHHHHHHh--
Q 003587 278 DLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME-------------AKKGIYCSPLRLLAMEVFDKVNA-- 340 (809)
Q Consensus 278 g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~-------------~~~~LvlsPtR~La~Q~~~~l~~-- 340 (809)
+|..|++ ...++.+++|++++++||||||||++++.+++. +..+|||+|||+||.|+++++..
T Consensus 29 ~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 6777887 345556899999999999999999996655431 23589999999999999886642
Q ss_pred ---------c-----CCceeeeecccccccc------cCcceeeeeeecc----cC------CcccEEEEeccccccccc
Q 003587 341 ---------L-----GVYCSLLTGQEKKLVP------FSNHIACTVEMVS----TD------EMYDVAVIDEIQMMSDAC 390 (809)
Q Consensus 341 ---------~-----g~~~~l~~g~~~~~~~------~~~~i~~tie~lt----~~------rlv~~vVIDEAH~i~d~~ 390 (809)
. ++.+.+.+|+...... ....+++|++.+. .. ..+++|||||||++.+..
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~ 188 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENK 188 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCc
Confidence 1 3345667776543221 2334566776542 11 128999999999999888
Q ss_pred chhHHHHHHhhcc----cccccccCCchHH--HHHHHHhhhc-----CCc--eEEeecccc------ch--------hhH
Q 003587 391 RGYAWTRALLGLM----ADEIHLCGDPSVL--DVVRKICSET-----GDE--LHEQHYERF------KP--------LVV 443 (809)
Q Consensus 391 ~g~~~~~ill~l~----~~~i~l~~s~~~~--~li~~l~~~~-----~~~--~~~~~~~r~------~~--------l~~ 443 (809)
+|..+...+..+. ...+.+..++|.. +.+....... ... ++...+.+. .+ ...
T Consensus 189 RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~ 268 (876)
T PRK13767 189 RGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEE 268 (876)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccch
Confidence 9987765543322 2233333344432 2222222111 111 111111100 00 000
Q ss_pred hHHHHHHHHHh--cCCCCEEEEe-chhHHHHHHHHHHHhc-----CCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEe
Q 003587 444 EAKTLLGDLRN--VRSGDCVVAF-SRREIFEVKMAIEKHT-----NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515 (809)
Q Consensus 444 ~~k~ll~~l~~--~~~g~~II~f-srk~~~~l~~~L~~~~-----g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVA 515 (809)
....+...+.. ...+.++||+ +++.|+.++..|.+.. +..+.++||+|++++|..+++.|+ +|+++||||
T Consensus 269 ~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk--~G~i~vLVa 346 (876)
T PRK13767 269 ISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLK--RGELKVVVS 346 (876)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHH--cCCCeEEEE
Confidence 01122222221 1234566666 5788999999997632 468999999999999999999999 899999999
Q ss_pred ccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH---HH-HHHcCCch
Q 003587 516 SDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY---LI-ECLKQPFE 590 (809)
Q Consensus 516 Tdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~---l~-~~l~~~~~ 590 (809)
|+++++|||+| |++||+++. |.++.+|+||+|||||.+...+.|.++.....+... +. ...+...+
T Consensus 347 Ts~Le~GIDip~Vd~VI~~~~---------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie 417 (876)
T PRK13767 347 STSLELGIDIGYIDLVVLLGS---------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKID 417 (876)
T ss_pred CChHHhcCCCCCCcEEEEeCC---------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCC
Confidence 99999999998 999999999 899999999999999974333468888765444322 12 22333333
Q ss_pred HHHHh--cCCCcHHHHHHHHhcCccchHHHHHHHHhhhcccCCccccCCcchHHHHHHHHHH
Q 003587 591 VVKKV--GLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650 (809)
Q Consensus 591 ~~~~~--~~~p~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~L~~ 650 (809)
++... ...-...++...+.. ...+..++.+.+.... .|.....+....+.+.|..
T Consensus 418 ~~~~~~~~~dvl~q~i~~~~~~-~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~l~~l~~ 474 (876)
T PRK13767 418 RVHIPKNPLDVLAQHIVGMAIE-RPWDIEEAYNIVRRAY----PYRDLSDEDFESVLRYLAG 474 (876)
T ss_pred CCCCCCCcHHHHHHHHHHHHHc-CCCCHHHHHHHHhccC----CcccCCHHHHHHHHHHHhc
Confidence 22110 011123445555444 4567777777665543 2233344555666666654
No 46
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-31 Score=320.48 Aligned_cols=305 Identities=17% Similarity=0.202 Sum_probs=205.2
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHc----CCcEEEEcccHhHHHHHHHHHH-hcCCceeeeecccccccc----cCcce
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFME----AKKGIYCSPLRLLAMEVFDKVN-ALGVYCSLLTGQEKKLVP----FSNHI 362 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~----~~~~LvlsPtR~La~Q~~~~l~-~~g~~~~l~~g~~~~~~~----~~~~i 362 (809)
.+++++|++||||||||++++++++. +++++|+.|||++|.|+++++. .++..++...|...+... ....+
T Consensus 15 ~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s~~t~I~ 94 (819)
T TIGR01970 15 AAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLE 94 (819)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccCCCCcEE
Confidence 57889999999999999998888773 4588999999999999999996 455555444444333211 12223
Q ss_pred eeeeeeccc-----C--CcccEEEEecccc-cccccchhHHHHHH-hhcccccccccCCchHHH-HHHHHhhhc------
Q 003587 363 ACTVEMVST-----D--EMYDVAVIDEIQM-MSDACRGYAWTRAL-LGLMADEIHLCGDPSVLD-VVRKICSET------ 426 (809)
Q Consensus 363 ~~tie~lt~-----~--rlv~~vVIDEAH~-i~d~~~g~~~~~il-l~l~~~~i~l~~s~~~~~-li~~l~~~~------ 426 (809)
++|.-++.. . ..+++|||||||+ .++.+++..+...+ ..++.....+++++|... ....+....
T Consensus 95 v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~~~~vI~~~ 174 (819)
T TIGR01970 95 VVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESE 174 (819)
T ss_pred EECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcCCCcEEEec
Confidence 344322211 0 1189999999995 66666666554433 345555555556665432 122222110
Q ss_pred CCc-eEEeeccccchh-hHhH--HHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHHh--cCCeEEEEeCCCCHHHHHHH
Q 003587 427 GDE-LHEQHYERFKPL-VVEA--KTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH--TNHHCCVIYGALPPETRRQQ 499 (809)
Q Consensus 427 ~~~-~~~~~~~r~~~l-~~~~--k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~--~g~~v~~lhg~l~~~~R~~~ 499 (809)
+.. .+.+.|...... .... ...+..+.....|+++||++ ..++..++..|.+. .++.+.++||+|++++|.++
T Consensus 175 gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~ 254 (819)
T TIGR01970 175 GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRA 254 (819)
T ss_pred CcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHH
Confidence 000 111222111110 0100 11222333345688888884 68999999999863 36889999999999999999
Q ss_pred HHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHHHHcccCCCCCCCCceE
Q 003587 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIYPDGL 569 (809)
Q Consensus 500 ~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ 569 (809)
++.|+ +|+.+||||||++++||||| |++||++|++| ||.. ...|.|.++|.||+|||||.+. |.
T Consensus 255 ~~~~~--~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~----G~ 328 (819)
T TIGR01970 255 IKPDP--QGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP----GV 328 (819)
T ss_pred Hhhcc--cCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC----CE
Confidence 99998 89999999999999999998 99999999876 6544 3678999999999999999965 99
Q ss_pred EEEEecccHHHHHHHHcCCchHHHHhcCCCcHHHH
Q 003587 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQV 604 (809)
Q Consensus 570 ~i~~~~~d~~~l~~~l~~~~~~~~~~~~~p~~~~l 604 (809)
||.|++++.. ..+.....+++.+..+.+..-++
T Consensus 329 cyrL~t~~~~--~~l~~~~~PEI~r~~L~~~~L~l 361 (819)
T TIGR01970 329 CYRLWSEEQH--QRLPAQDEPEILQADLSGLALEL 361 (819)
T ss_pred EEEeCCHHHH--HhhhcCCCcceeccCcHHHHHHH
Confidence 9999987643 34455567777766654333333
No 47
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=1.2e-30 Score=314.27 Aligned_cols=306 Identities=19% Similarity=0.221 Sum_probs=203.4
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHc----CCcEEEEcccHhHHHHHHHHHHh-cCCceeeeeccccccc----ccCcce
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFME----AKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLV----PFSNHI 362 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~----~~~~LvlsPtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~----~~~~~i 362 (809)
.++++++++||||||||+++++++++ .+++||+.|||++|.|+++++.+ ++..++...|...+.. .....+
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~~~t~I~ 97 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLE 97 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccCCCCcEE
Confidence 67889999999999999998888874 35789999999999999999964 4555544444333321 122233
Q ss_pred eeeeeeccc----C---CcccEEEEeccccc-ccccchhHHH-HHHhhcccccccccCCchHHH-HHHHHhhhc------
Q 003587 363 ACTVEMVST----D---EMYDVAVIDEIQMM-SDACRGYAWT-RALLGLMADEIHLCGDPSVLD-VVRKICSET------ 426 (809)
Q Consensus 363 ~~tie~lt~----~---rlv~~vVIDEAH~i-~d~~~g~~~~-~ill~l~~~~i~l~~s~~~~~-li~~l~~~~------ 426 (809)
++|.-++.. . ..+++|||||||+. .+.+....+. .++..++.....++.++|... ....+....
T Consensus 98 v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~~~~~~~~I~~~ 177 (812)
T PRK11664 98 VVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLPDAPVIVSE 177 (812)
T ss_pred EEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHHhcCCCCEEEec
Confidence 444322210 0 11899999999984 3433333332 333445555455556665422 122222110
Q ss_pred CCc-eEEeeccccch-hhHhH--HHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHHh--cCCeEEEEeCCCCHHHHHHH
Q 003587 427 GDE-LHEQHYERFKP-LVVEA--KTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH--TNHHCCVIYGALPPETRRQQ 499 (809)
Q Consensus 427 ~~~-~~~~~~~r~~~-l~~~~--k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~--~g~~v~~lhg~l~~~~R~~~ 499 (809)
+.. .+.+.|..... ..... ...+..+.....|+++||++ .+++..++..|.+. .++.+..+||+|++++|.++
T Consensus 178 gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~ 257 (812)
T PRK11664 178 GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKA 257 (812)
T ss_pred CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHH
Confidence 000 01122211110 01110 11223333345688888884 68999999999862 36889999999999999999
Q ss_pred HHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHHHHcccCCCCCCCCceE
Q 003587 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIYPDGL 569 (809)
Q Consensus 500 ~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ 569 (809)
++.|. +|+.+||||||++++||||| |++||++|.+| ||.. ...+.|.++|.||+|||||.+. |.
T Consensus 258 ~~~~~--~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~----G~ 331 (812)
T PRK11664 258 ILPAP--AGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP----GI 331 (812)
T ss_pred hcccc--CCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC----cE
Confidence 99998 89999999999999999998 99999999876 6644 3568899999999999999965 99
Q ss_pred EEEEecccHHHHHHHHcCCchHHHHhcCCCcHHHHH
Q 003587 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVE 605 (809)
Q Consensus 570 ~i~~~~~d~~~l~~~l~~~~~~~~~~~~~p~~~~l~ 605 (809)
||.||+++.. ..+...+.+++.+..+.+..-.+.
T Consensus 332 cyrL~t~~~~--~~l~~~~~PEI~r~dL~~~~L~l~ 365 (812)
T PRK11664 332 CLHLYSKEQA--ERAAAQSEPEILHSDLSGLLLELL 365 (812)
T ss_pred EEEecCHHHH--hhCccCCCCceeccchHHHHHHHH
Confidence 9999987643 235556677777766644333333
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=4.3e-30 Score=311.88 Aligned_cols=262 Identities=18% Similarity=0.212 Sum_probs=179.8
Q ss_pred CeEEEEcCCCChHHHHHHHH----HHcCCcEEEEcccHhHHHHHHHHHHhc----CCceeeeeccccccc--------c-
Q 003587 295 KIIYHCGPTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTGQEKKLV--------P- 357 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~----L~~~~~~LvlsPtR~La~Q~~~~l~~~----g~~~~l~~g~~~~~~--------~- 357 (809)
+|++++||||||||.+++.+ +..+++++|++||++||.|+++.++++ ++.+.+++|...... .
T Consensus 473 ~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~ 552 (926)
T TIGR00580 473 MDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS 552 (926)
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc
Confidence 69999999999999996544 446789999999999999999998874 455666665432110 0
Q ss_pred -cCcceeeeeeecccC---CcccEEEEecccccccccchhHHHHHHhhcccccccccCCchHHH--HHHHHhhhcCCc--
Q 003587 358 -FSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLD--VVRKICSETGDE-- 429 (809)
Q Consensus 358 -~~~~i~~tie~lt~~---rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~--li~~l~~~~~~~-- 429 (809)
....+++|+.++... ..++++||||+|++ |......+..+......++.++|... +...+.......
T Consensus 553 g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I 627 (926)
T TIGR00580 553 GKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSII 627 (926)
T ss_pred CCceEEEchHHHhhCCCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEE
Confidence 123455676555422 22899999999994 55566666666555444444444221 111111110000
Q ss_pred --------eEEeeccccchhhHhHHHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHH
Q 003587 430 --------LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQ 499 (809)
Q Consensus 430 --------~~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~ 499 (809)
.+...+..... ......+...+. ..+.++||++ ...++.++..|.+. .+.++..+||+|++++|.++
T Consensus 628 ~~~p~~R~~V~t~v~~~~~-~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~i 704 (926)
T TIGR00580 628 ATPPEDRLPVRTFVMEYDP-ELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEV 704 (926)
T ss_pred ecCCCCccceEEEEEecCH-HHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Confidence 01111111111 001112222222 3345555554 47888999998874 46899999999999999999
Q ss_pred HHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 500 ~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
+++|+ +|+++|||||+++++|||+| |++||+++++. .+.++|+||+||+||.|. .|+||+|++++
T Consensus 705 m~~F~--~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~--------~gls~l~Qr~GRvGR~g~---~g~aill~~~~ 770 (926)
T TIGR00580 705 MLEFY--KGEFQVLVCTTIIETGIDIPNANTIIIERADK--------FGLAQLYQLRGRVGRSKK---KAYAYLLYPHQ 770 (926)
T ss_pred HHHHH--cCCCCEEEECChhhcccccccCCEEEEecCCC--------CCHHHHHHHhcCCCCCCC---CeEEEEEECCc
Confidence 99999 89999999999999999998 99999999733 267899999999999999 89999999654
No 49
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=7.3e-31 Score=290.55 Aligned_cols=296 Identities=15% Similarity=0.174 Sum_probs=224.9
Q ss_pred HHHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHH----HHHHHH---cCCcEEEEcccHhHHHHHHHHHH
Q 003587 269 RFRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYN----ALQRFM---EAKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 269 ~i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~----~L~~L~---~~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
.++.-|+..+|..||+ +-+|+.++.+-|+|+.+..|+|||++ ++..+. .....+|++|||++|.|+.+.+.
T Consensus 35 ~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~ 114 (980)
T KOG4284|consen 35 EVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVR 114 (980)
T ss_pred HHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHH
Confidence 4567788999999998 33455589999999999999999998 344443 34578999999999999999998
Q ss_pred hcC-----CceeeeecccccccccCcceeeeeeecccCCc-------------ccEEEEeccccccc-ccchhHHHHHHh
Q 003587 340 ALG-----VYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSD-ACRGYAWTRALL 400 (809)
Q Consensus 340 ~~g-----~~~~l~~g~~~~~~~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d-~~~g~~~~~ill 400 (809)
+.+ ..|.++.|...-.......-.|-+.+.+|||+ ++++|+||||.+.+ ..|.+++..++.
T Consensus 115 ~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~ 194 (980)
T KOG4284|consen 115 KVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIIN 194 (980)
T ss_pred HhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHH
Confidence 874 46777666554333322223344566677665 89999999999998 668899999999
Q ss_pred hcccccccccCCchHHHHHHHHhhhcCCc-eE-------------Eeeccccc-h-hhHhH-----HHHHHHHHhcCCCC
Q 003587 401 GLMADEIHLCGDPSVLDVVRKICSETGDE-LH-------------EQHYERFK-P-LVVEA-----KTLLGDLRNVRSGD 459 (809)
Q Consensus 401 ~l~~~~i~l~~s~~~~~li~~l~~~~~~~-~~-------------~~~~~r~~-~-l~~~~-----k~ll~~l~~~~~g~ 459 (809)
.|++.++.+..+++.......++....++ .. .+++...+ + ..++. ..|-..+...+-..
T Consensus 195 slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~Q 274 (980)
T KOG4284|consen 195 SLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQ 274 (980)
T ss_pred hcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHH
Confidence 99999988877777655544444332221 11 11221111 1 11111 12333444555566
Q ss_pred EEEEec-hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC
Q 003587 460 CVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK 537 (809)
Q Consensus 460 ~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K 537 (809)
.+||++ ...|+.++..|... |+.|..+.|.|++.+|..+++.++ +-.++|||+||..+||||-| |..|||.|.
T Consensus 275 AlVF~~~~sra~~~a~~L~ss-G~d~~~ISgaM~Q~~Rl~a~~~lr--~f~~rILVsTDLtaRGIDa~~vNLVVNiD~-- 349 (980)
T KOG4284|consen 275 ALVFCDQISRAEPIATHLKSS-GLDVTFISGAMSQKDRLLAVDQLR--AFRVRILVSTDLTARGIDADNVNLVVNIDA-- 349 (980)
T ss_pred HHhhhhhhhhhhHHHHHhhcc-CCCeEEeccccchhHHHHHHHHhh--hceEEEEEecchhhccCCccccceEEecCC--
Confidence 777775 47899999999875 999999999999999999999998 78999999999999999998 999999999
Q ss_pred CCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHH
Q 003587 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579 (809)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~ 579 (809)
|.+-++|.||||||||+|. .|.+++|+.+..+
T Consensus 350 -------p~d~eTY~HRIGRAgRFG~---~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 350 -------PADEETYFHRIGRAGRFGA---HGAAVTLLEDERE 381 (980)
T ss_pred -------CcchHHHHHHhhhcccccc---cceeEEEeccchh
Confidence 9999999999999999999 8999999965443
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.2e-29 Score=314.09 Aligned_cols=261 Identities=17% Similarity=0.214 Sum_probs=179.6
Q ss_pred CeEEEEcCCCChHHHHHHH----HHHcCCcEEEEcccHhHHHHHHHHHHhc----CCceeeeeccccccc----------
Q 003587 295 KIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTGQEKKLV---------- 356 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~----~L~~~~~~LvlsPtR~La~Q~~~~l~~~----g~~~~l~~g~~~~~~---------- 356 (809)
+|++++||||||||.+++. .+..+++++|++||++||.|+++.+.+. ++.+.+++|......
T Consensus 622 ~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~ 701 (1147)
T PRK10689 622 MDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE 701 (1147)
T ss_pred CCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 7999999999999987543 3446789999999999999999999864 345555555322110
Q ss_pred ccCcceeeeeeecccC---CcccEEEEecccccccccchhHHHHHHhhcccccccccCCchHHHHHHHHhhhcC-CceEE
Q 003587 357 PFSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETG-DELHE 432 (809)
Q Consensus 357 ~~~~~i~~tie~lt~~---rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~-~~~~~ 432 (809)
.....+++|+.++... ..++++||||+|++ |......+..++.....++.++|...-...++.... +..++
T Consensus 702 g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrf-----G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I 776 (1147)
T PRK10689 702 GKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRF-----GVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII 776 (1147)
T ss_pred CCCCEEEECHHHHhCCCCHhhCCEEEEechhhc-----chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEE
Confidence 1223456677655432 23899999999996 334556666676666666666663322222221111 11111
Q ss_pred -----------eeccccchhhHhHHHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHH
Q 003587 433 -----------QHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQ 499 (809)
Q Consensus 433 -----------~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~ 499 (809)
+.+....... ....++..+. ..+.++||++ ...++.++..|.+. .+.++.++||+|++++|.++
T Consensus 777 ~~~p~~r~~v~~~~~~~~~~~-~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~i 853 (1147)
T PRK10689 777 ATPPARRLAVKTFVREYDSLV-VREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 (1147)
T ss_pred ecCCCCCCCceEEEEecCcHH-HHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHH
Confidence 1111111111 1123333332 2455666664 46788899998874 36799999999999999999
Q ss_pred HHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 500 ~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+.+|+ +|+++|||||+++++|||+| |++||..+... .+.++|+||+||+||.|. .|+|++++++
T Consensus 854 m~~Fr--~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~--------fglaq~~Qr~GRvGR~g~---~g~a~ll~~~ 918 (1147)
T PRK10689 854 MNDFH--HQRFNVLVCTTIIETGIDIPTANTIIIERADH--------FGLAQLHQLRGRVGRSHH---QAYAWLLTPH 918 (1147)
T ss_pred HHHHH--hcCCCEEEECchhhcccccccCCEEEEecCCC--------CCHHHHHHHhhccCCCCC---ceEEEEEeCC
Confidence 99999 89999999999999999998 99999665422 256789999999999999 8999999864
No 51
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.5e-31 Score=285.78 Aligned_cols=280 Identities=21% Similarity=0.280 Sum_probs=180.3
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cC----CcEEEEcccHhHHHHHHHHHHhcCCc----eeeeeccccccc---
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EA----KKGIYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEKKLV--- 356 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~----~~~LvlsPtR~La~Q~~~~l~~~g~~----~~l~~g~~~~~~--- 356 (809)
...+||.|.||||||||++|..++. .. -++|||+||++|+.|+++.+..+... ++..+|+..-..
T Consensus 181 ~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~ 260 (620)
T KOG0350|consen 181 SRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEAR 260 (620)
T ss_pred CCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHH
Confidence 4588999999999999999655554 22 37899999999999999999987443 444455432111
Q ss_pred ---ccCcceeeeeeecccCCc--------------ccEEEEecccccccccchhHHHHHHhhcccc---------ccccc
Q 003587 357 ---PFSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSDACRGYAWTRALLGLMAD---------EIHLC 410 (809)
Q Consensus 357 ---~~~~~i~~tie~lt~~rl--------------v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~---------~i~l~ 410 (809)
...+...+.+.+.||+|+ +.++||||||+|++..|. .|...++.+... .+...
T Consensus 261 qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ-~Wl~~v~~~~~~~k~~~~~~nii~~~ 339 (620)
T KOG0350|consen 261 QLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQ-EWLDTVMSLCKTMKRVACLDNIIRQR 339 (620)
T ss_pred HHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHH-HHHHHHHHHhCCchhhcChhhhhhhc
Confidence 112223456777788876 789999999999876443 343333222111 01111
Q ss_pred C--CchHHHHHH------------------------HHhhh-cCCceEEe-------eccccchh-----h----HhHHH
Q 003587 411 G--DPSVLDVVR------------------------KICSE-TGDELHEQ-------HYERFKPL-----V----VEAKT 447 (809)
Q Consensus 411 ~--s~~~~~li~------------------------~l~~~-~~~~~~~~-------~~~r~~~l-----~----~~~k~ 447 (809)
. .|++..... ++... ........ .|.-+..+ . .....
T Consensus 340 ~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~ 419 (620)
T KOG0350|consen 340 QAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLA 419 (620)
T ss_pred ccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHh
Confidence 1 111111100 00000 00000111 11100000 0 00112
Q ss_pred HHHHHHhcCCCCEEEEec--hhHHHHHHHHHH---HhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccc
Q 003587 448 LLGDLRNVRSGDCVVAFS--RREIFEVKMAIE---KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (809)
Q Consensus 448 ll~~l~~~~~g~~II~fs--rk~~~~l~~~L~---~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~G 522 (809)
+.. +....+...++||+ ...+..++.-|. .....++..+.|++....|...++.|+ .|+++||||||+++||
T Consensus 420 ~~~-lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~--~g~i~vLIcSD~laRG 496 (620)
T KOG0350|consen 420 VYA-LITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFA--KGDINVLICSDALARG 496 (620)
T ss_pred HHH-HHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHh--cCCceEEEehhhhhcC
Confidence 233 33344455566664 355666666554 224677888999999999999999999 8999999999999999
Q ss_pred cccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccH-HHHHHHHcC
Q 003587 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL-DYLIECLKQ 587 (809)
Q Consensus 523 IDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~-~~l~~~l~~ 587 (809)
||+. |+.|||||+ |.+..+|+||+||+||+|. .|.|+++..... ..+.+++..
T Consensus 497 iDv~~v~~VINYd~---------P~~~ktyVHR~GRTARAgq---~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 497 IDVNDVDNVINYDP---------PASDKTYVHRAGRTARAGQ---DGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred CcccccceEeecCC---------CchhhHHHHhhcccccccC---CceEEEeeccccchHHHHHHHH
Confidence 9995 999999999 9999999999999999999 899999997544 344455543
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=3.4e-29 Score=294.87 Aligned_cols=279 Identities=17% Similarity=0.100 Sum_probs=183.3
Q ss_pred HhhCCCeEEEEcCCCChHHHHHHHHHH-------------------cCCcEEEEcccHhHHHHHHHHHHhc-------CC
Q 003587 290 RVMKRKIIYHCGPTNSGKTYNALQRFM-------------------EAKKGIYCSPLRLLAMEVFDKVNAL-------GV 343 (809)
Q Consensus 290 ~~l~grdviv~apTGSGKTl~~L~~L~-------------------~~~~~LvlsPtR~La~Q~~~~l~~~-------g~ 343 (809)
.+++|+++|++|+||||||++..+.++ ..++++|++|||+||.|+..++.+. |.
T Consensus 175 ~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~ 254 (675)
T PHA02653 175 AWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGS 254 (675)
T ss_pred HHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCc
Confidence 368999999999999999998332221 1346888899999999999998753 23
Q ss_pred ceeeeecccccc----c-ccCcceeeeeeeccc-CCcccEEEEecccccccccchhHHHHHHhhccc-ccccccCCchHH
Q 003587 344 YCSLLTGQEKKL----V-PFSNHIACTVEMVST-DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416 (809)
Q Consensus 344 ~~~l~~g~~~~~----~-~~~~~i~~tie~lt~-~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~-~~i~l~~s~~~~ 416 (809)
.+.+..|..... . .....+.+|..+..+ -..+++|||||||++..+ +.....++..+.. .++.++.++|..
T Consensus 255 ~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 255 PISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred eEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccc--hhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 345555544321 1 112234555433221 122899999999999875 3333333333322 235677787764
Q ss_pred HHHHHHhhhcCCce-----------EEeeccccc------h--hhHhHHHHHHHHHhc---CCCCEEEEe-chhHHHHHH
Q 003587 417 DVVRKICSETGDEL-----------HEQHYERFK------P--LVVEAKTLLGDLRNV---RSGDCVVAF-SRREIFEVK 473 (809)
Q Consensus 417 ~li~~l~~~~~~~~-----------~~~~~~r~~------~--l~~~~k~ll~~l~~~---~~g~~II~f-srk~~~~l~ 473 (809)
+.+..+........ +.+.|.... . .......++..+... ..++++||+ ++.+++.++
T Consensus 333 ~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~ 412 (675)
T PHA02653 333 DDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYK 412 (675)
T ss_pred HhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHH
Confidence 43333332222111 111221000 0 011122344444332 345777777 468899999
Q ss_pred HHHHHhc-CCeEEEEeCCCCHHHHHHHHHHh-hcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCC---CCCcccCC
Q 003587 474 MAIEKHT-NHHCCVIYGALPPETRRQQANLF-NDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN---GDKIIPVP 547 (809)
Q Consensus 474 ~~L~~~~-g~~v~~lhg~l~~~~R~~~~~~F-~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~d---g~~~~P~s 547 (809)
..|.+.. ++.+.++||+|++. +++++.| + +|+.+||||||++++||||| |++||++|..|.. +....|.|
T Consensus 413 ~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iS 488 (675)
T PHA02653 413 KYLEKRLPIYDFYIIHGKVPNI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFIS 488 (675)
T ss_pred HHHHhhcCCceEEeccCCcCHH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccC
Confidence 9998753 68999999999985 4667777 5 79999999999999999998 9999999954421 12345779
Q ss_pred HhHHHHHHcccCCCCCCCCceEEEEEecccH
Q 003587 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578 (809)
Q Consensus 548 ~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~ 578 (809)
.++|.||+|||||.+ .|.|+.|++++.
T Consensus 489 kasa~QRaGRAGR~~----~G~c~rLyt~~~ 515 (675)
T PHA02653 489 KSMRTQRKGRVGRVS----PGTYVYFYDLDL 515 (675)
T ss_pred HHHHHHhccCcCCCC----CCeEEEEECHHH
Confidence 999999999999995 499999998765
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=1e-29 Score=302.89 Aligned_cols=281 Identities=27% Similarity=0.383 Sum_probs=204.9
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHH----c-CCcEEEEcccHhHHHHHHHHHH---hcCCceeeeecccccc---cccC
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFM----E-AKKGIYCSPLRLLAMEVFDKVN---ALGVYCSLLTGQEKKL---VPFS 359 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~----~-~~~~LvlsPtR~La~Q~~~~l~---~~g~~~~l~~g~~~~~---~~~~ 359 (809)
+..++|+++++|||||||+.++.++. + ++++||++|+|+||.|+++++. .+|+.+.+.||+.... ....
T Consensus 44 ~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~ 123 (766)
T COG1204 44 LLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARY 123 (766)
T ss_pred ccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccC
Confidence 35689999999999999999665554 4 4799999999999999999998 6799999999987632 3445
Q ss_pred cceeeeeeecccC--------CcccEEEEecccccccccchhHHHHHHhhccccc--ccccCCchHHHHHHHHhhhcCCc
Q 003587 360 NHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE--IHLCGDPSVLDVVRKICSETGDE 429 (809)
Q Consensus 360 ~~i~~tie~lt~~--------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~--i~l~~s~~~~~li~~l~~~~~~~ 429 (809)
..+++|+|.+... ..+++|||||+|++.|..+|+....++..+.... +.+.+-...+.....++.+.+.+
T Consensus 124 ~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~ 203 (766)
T COG1204 124 DVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAK 203 (766)
T ss_pred CEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCc
Confidence 5677777766422 1289999999999999989999887776554432 44444322233334445554444
Q ss_pred eEEeecc-------------------ccc--hhhHhHHHHHHHHHhcCCCC-EEEEe-chhHHHHHHHHHHHh-------
Q 003587 430 LHEQHYE-------------------RFK--PLVVEAKTLLGDLRNVRSGD-CVVAF-SRREIFEVKMAIEKH------- 479 (809)
Q Consensus 430 ~~~~~~~-------------------r~~--~l~~~~k~ll~~l~~~~~g~-~II~f-srk~~~~l~~~L~~~------- 479 (809)
.+...+. ... +.......+...+.....+. ++||+ ||+.+...+..+.+.
T Consensus 204 ~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~ 283 (766)
T COG1204 204 LVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSD 283 (766)
T ss_pred ccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCCh
Confidence 3321110 000 11111222222333444554 44444 688888888877620
Q ss_pred -----------------------------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccccccEE
Q 003587 480 -----------------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRV 530 (809)
Q Consensus 480 -----------------------------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~V 530 (809)
....++.+|+||+.++|..+.+.|+ .|.++|||||..++.|+|+|.++|
T Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr--~g~ikVlv~TpTLA~GVNLPA~~V 361 (766)
T COG1204 284 DEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFR--KGKIKVLVSTPTLAAGVNLPARTV 361 (766)
T ss_pred hhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHh--cCCceEEEechHHhhhcCCcceEE
Confidence 1135788999999999999999999 899999999999999999999999
Q ss_pred EEcCCCCCC-CCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEe
Q 003587 531 VFYSLSKYN-GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 531 I~~d~~K~d-g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~ 574 (809)
|..|...|+ ..+.++.++-+|+|++|||||.|- ++.|.++.+.
T Consensus 362 IIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~-d~~G~~~i~~ 405 (766)
T COG1204 362 IIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY-DDYGEAIILA 405 (766)
T ss_pred EEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc-CCCCcEEEEe
Confidence 999999999 334889999999999999999996 5577777776
No 54
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.5e-30 Score=273.90 Aligned_cols=296 Identities=19% Similarity=0.241 Sum_probs=218.8
Q ss_pred HHHHHHhCCCCCCCc----cchhHHhhCCCeEEEEcCCCChHHHHHHHHHHc--------CCcEEEEcccHhHHHHHHHH
Q 003587 270 FRAMIESADLTKPHT----WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME--------AKKGIYCSPLRLLAMEVFDK 337 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~----~~p~~~~l~grdviv~apTGSGKTl~~L~~L~~--------~~~~LvlsPtR~La~Q~~~~ 337 (809)
+..+|.+-||..||| .+|. +|+|+|++..|-||||||.|++.++++ +-++++++|||+||.|..+.
T Consensus 32 v~raI~kkg~~~ptpiqRKTipl--iLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkv 109 (529)
T KOG0337|consen 32 VLRAIHKKGFNTPTPIQRKTIPL--ILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKV 109 (529)
T ss_pred HHHHHHHhhcCCCCchhcccccc--eeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHH
Confidence 457888999999999 4555 899999999999999999996655542 23789999999999999999
Q ss_pred HHhcCCceee----e-ecccccccccCc-ceeeeeeecccCCc-------------ccEEEEecccccccccchhHHHHH
Q 003587 338 VNALGVYCSL----L-TGQEKKLVPFSN-HIACTVEMVSTDEM-------------YDVAVIDEIQMMSDACRGYAWTRA 398 (809)
Q Consensus 338 l~~~g~~~~l----~-~g~~~~~~~~~~-~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~~~g~~~~~i 398 (809)
++.+|....+ + +|+.... .+.. +-...+.++||+++ +.+||+|||+.+.++||..+...+
T Consensus 110 vkdlgrgt~lr~s~~~ggD~~ee-qf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~ 188 (529)
T KOG0337|consen 110 VKDLGRGTKLRQSLLVGGDSIEE-QFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEI 188 (529)
T ss_pred HHHhccccchhhhhhcccchHHH-HHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHH
Confidence 9998765433 3 3333221 1110 00112233344433 789999999999999999999999
Q ss_pred HhhcccccccccCCchHHHHHHHHhhhcCCceEEee--------------ccccchhhHhHHHHHHHHHhcCC-CCEEEE
Q 003587 399 LLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQH--------------YERFKPLVVEAKTLLGDLRNVRS-GDCVVA 463 (809)
Q Consensus 399 ll~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~--------------~~r~~~l~~~~k~ll~~l~~~~~-g~~II~ 463 (809)
+..++..+++++++++........+..-..+..... |.+..+. .....|+..+..... ...++|
T Consensus 189 l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a-~K~aaLl~il~~~~~~~~t~vf 267 (529)
T KOG0337|consen 189 LSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA-EKEAALLSILGGRIKDKQTIVF 267 (529)
T ss_pred HHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH-HHHHHHHHHHhccccccceeEE
Confidence 999999999999999877665445444322221111 1111111 111245545544333 345666
Q ss_pred echhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCC
Q 003587 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDK 542 (809)
Q Consensus 464 fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~ 542 (809)
..++...+....|....|+.+..+||.|+++.|......|+ .++..+||.||+++||+||| .+.|||||+
T Consensus 268 ~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~--~~k~~~lvvTdvaaRG~diplldnvinyd~------- 338 (529)
T KOG0337|consen 268 VATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR--GRKTSILVVTDVAARGLDIPLLDNVINYDF------- 338 (529)
T ss_pred ecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc--CCccceEEEehhhhccCCCccccccccccC-------
Confidence 66655555555555556999999999999999999999999 79999999999999999999 999999999
Q ss_pred cccCCHhHHHHHHcccCCCCCCCCceEEEEEecc-cHHHHHH
Q 003587 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD-DLDYLIE 583 (809)
Q Consensus 543 ~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~-d~~~l~~ 583 (809)
|.+..-|+||+||+.|+|. .|.+|.|+.+ +..++..
T Consensus 339 --p~~~klFvhRVgr~aragr---tg~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 339 --PPDDKLFVHRVGRVARAGR---TGRAYSLVASTDDPYLLD 375 (529)
T ss_pred --CCCCceEEEEecchhhccc---cceEEEEEecccchhhhh
Confidence 8899999999999999998 8999999964 4445443
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=5e-29 Score=296.05 Aligned_cols=281 Identities=16% Similarity=0.213 Sum_probs=184.7
Q ss_pred HHHHHhCCCCCCCcc--chhHHhhCC------CeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHH
Q 003587 271 RAMIESADLTKPHTW--FPFARVMKR------KIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~~--~p~~~~l~g------rdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l 338 (809)
.+.++.++| .||+. -.+..++.+ .+.+++||||||||++++.+++ .+.+++|++||++||.|+++.+
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHH
Confidence 356678888 58872 233334443 2589999999999999665543 5679999999999999999999
Q ss_pred Hhc----CCceeeeecccccccc----------cCcceeeeeeecccC---CcccEEEEecccccccccchhHHHHHHhh
Q 003587 339 NAL----GVYCSLLTGQEKKLVP----------FSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLG 401 (809)
Q Consensus 339 ~~~----g~~~~l~~g~~~~~~~----------~~~~i~~tie~lt~~---rlv~~vVIDEAH~i~d~~~g~~~~~ill~ 401 (809)
+++ |+.+.+++|....... ....+++|+..+... ..++++||||+|++.. ..+..+..
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~-----~qr~~l~~ 379 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGV-----EQRKKLRE 379 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccH-----HHHHHHHH
Confidence 875 5778888886543210 123455565544322 2289999999999643 33333333
Q ss_pred cc-----cccccccCCchHHHHHHHHhhhcC----------CceEEeeccccchhhHhHHHHHHHHHhc-CCC-CEEEEe
Q 003587 402 LM-----ADEIHLCGDPSVLDVVRKICSETG----------DELHEQHYERFKPLVVEAKTLLGDLRNV-RSG-DCVVAF 464 (809)
Q Consensus 402 l~-----~~~i~l~~s~~~~~li~~l~~~~~----------~~~~~~~~~r~~~l~~~~k~ll~~l~~~-~~g-~~II~f 464 (809)
.. +..+.+.++|....+......... ...+...+.... ....++..+... ..+ .++||+
T Consensus 380 ~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~----~~~~~~~~i~~~l~~g~q~~v~~ 455 (630)
T TIGR00643 380 KGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHD----EKDIVYEFIEEEIAKGRQAYVVY 455 (630)
T ss_pred hcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcc----hHHHHHHHHHHHHHhCCcEEEEE
Confidence 22 222233344322221111111100 011111111100 112333333322 233 455554
Q ss_pred ch---------hHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEc
Q 003587 465 SR---------REIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFY 533 (809)
Q Consensus 465 sr---------k~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~ 533 (809)
.. +.++.++..|.+. .+..|..+||+|++++|..+++.|+ +|+.+|||||+++++|||+| ++.||++
T Consensus 456 ~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~--~g~~~ILVaT~vie~GvDiP~v~~VIi~ 533 (630)
T TIGR00643 456 PLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFR--EGEVDILVATTVIEVGVDVPNATVMVIE 533 (630)
T ss_pred ccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHH--cCCCCEEEECceeecCcccCCCcEEEEe
Confidence 22 3466777777653 4688999999999999999999999 89999999999999999998 9999999
Q ss_pred CCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEe
Q 003587 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 534 d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~ 574 (809)
+.++ .+.++|.||+|||||.|. .|.|++++
T Consensus 534 ~~~r--------~gls~lhQ~~GRvGR~g~---~g~~il~~ 563 (630)
T TIGR00643 534 DAER--------FGLSQLHQLRGRVGRGDH---QSYCLLVY 563 (630)
T ss_pred CCCc--------CCHHHHHHHhhhcccCCC---CcEEEEEE
Confidence 9832 268899999999999998 89999998
No 56
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.6e-29 Score=266.12 Aligned_cols=307 Identities=19% Similarity=0.215 Sum_probs=226.6
Q ss_pred HhhhhccCcHHHHHHHHHHHhCCCCCCCccc--hhHHhhCCCeEEEEcCCCChHHHHHHHHHHcC-------CcEEEEcc
Q 003587 256 VEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFMEA-------KKGIYCSP 326 (809)
Q Consensus 256 ~~~~~~~f~~~l~~i~~~l~~~g~~~Pt~~~--p~~~~l~grdviv~apTGSGKTl~~L~~L~~~-------~~~LvlsP 326 (809)
.+|...++++.| +.-+...||++|+..+ ++..+..|.|+++.+++|+|||.+++.+++.. ..+|+++|
T Consensus 26 dsfddm~L~e~L---Lrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 26 DSFDDMNLKESL---LRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred hhhhhcCCCHHH---HhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 345555666655 4678899999998821 23335999999999999999999966655532 36799999
Q ss_pred cHhHHHHHHHHHHhcCCce----e-eeeccccccc-----ccCccee-eee----eecccCCc----ccEEEEecccccc
Q 003587 327 LRLLAMEVFDKVNALGVYC----S-LLTGQEKKLV-----PFSNHIA-CTV----EMVSTDEM----YDVAVIDEIQMMS 387 (809)
Q Consensus 327 tR~La~Q~~~~l~~~g~~~----~-l~~g~~~~~~-----~~~~~i~-~ti----e~lt~~rl----v~~vVIDEAH~i~ 387 (809)
+|+||.|+.+....+|... . ++.|...... ...++++ .|+ .|+..+.+ +.++|+|||++|+
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEML 182 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhh
Confidence 9999999998888876543 2 2333333211 1223333 343 33333222 8999999999999
Q ss_pred cccchhHHHHHHhhcccccccccCCchHHHHHHHHhhhcCCc--------------eEEeeccccchhhHhHHHHHHHHH
Q 003587 388 DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDE--------------LHEQHYERFKPLVVEAKTLLGDLR 453 (809)
Q Consensus 388 d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~--------------~~~~~~~r~~~l~~~~k~ll~~l~ 453 (809)
..+|...+..++..++.+.+.++.+++....+..+......+ -+.+.|.+..+-. ....++..+.
T Consensus 183 s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~ 261 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR 261 (397)
T ss_pred ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH
Confidence 999999999999999998888888877665555554433322 2223332221111 1123444443
Q ss_pred hcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccc-cccEEE
Q 003587 454 NVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVV 531 (809)
Q Consensus 454 ~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDi-pV~~VI 531 (809)
.....++|+ +++.+..+...|.. .++.+..+||+|.+.+|..+++.|+ .|..+|||.|+.++||||+ .+..||
T Consensus 262 --~~~q~~if~nt~r~v~~l~~~L~~-~~~~~s~~~~d~~q~~R~~~~~ef~--~gssrvlIttdl~argidv~~~slvi 336 (397)
T KOG0327|consen 262 --RVTQAVIFCNTRRKVDNLTDKLRA-HGFTVSAIHGDMEQNERDTLMREFR--SGSSRVLITTDLLARGIDVQQVSLVV 336 (397)
T ss_pred --hhhcceEEecchhhHHHHHHHHhh-CCceEEEeecccchhhhhHHHHHhh--cCCceEEeeccccccccchhhcceee
Confidence 334445555 78999999999965 5999999999999999999999999 8999999999999999999 599999
Q ss_pred EcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 532 ~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
+|++ |...++|+||+||+||.|. +|.+++|+++++....+
T Consensus 337 nydl---------P~~~~~yihR~gr~gr~gr---kg~~in~v~~~d~~~lk 376 (397)
T KOG0327|consen 337 NYDL---------PARKENYIHRIGRAGRFGR---KGVAINFVTEEDVRDLK 376 (397)
T ss_pred eecc---------ccchhhhhhhcccccccCC---CceeeeeehHhhHHHHH
Confidence 9999 9999999999999999999 89999999876554443
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=4.5e-29 Score=277.78 Aligned_cols=267 Identities=16% Similarity=0.198 Sum_probs=176.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH------cCCcEEEEcccHhHHHHHHHHHHhc-CCceeeeecccccc-------------
Q 003587 296 IIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNAL-GVYCSLLTGQEKKL------------- 355 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~~L~------~~~~~LvlsPtR~La~Q~~~~l~~~-g~~~~l~~g~~~~~------------- 355 (809)
+++++||||||||++++.+++ ..++++|++|+++|+.|+++++... |..+++.+|.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 589999999999999766655 2468899999999999999999986 65555444432100
Q ss_pred -----------cccCcceeeeeeecc----c--CC--------cccEEEEecccccccccchhHHHHHHhhccc-ccccc
Q 003587 356 -----------VPFSNHIACTVEMVS----T--DE--------MYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHL 409 (809)
Q Consensus 356 -----------~~~~~~i~~tie~lt----~--~r--------lv~~vVIDEAH~i~d~~~g~~~~~ill~l~~-~~i~l 409 (809)
....+.+++|++.+. . .. ..+++||||||++.+.+++. +...+..+.. ....+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 011233445554321 1 00 03789999999999876665 4444433332 23345
Q ss_pred cCCchHHHHHHHHhhhcCCceE-------------Eeeccccchh-hHhHHHHHHHHHhc-CCCCEEEEe-chhHHHHHH
Q 003587 410 CGDPSVLDVVRKICSETGDELH-------------EQHYERFKPL-VVEAKTLLGDLRNV-RSGDCVVAF-SRREIFEVK 473 (809)
Q Consensus 410 ~~s~~~~~li~~l~~~~~~~~~-------------~~~~~r~~~l-~~~~k~ll~~l~~~-~~g~~II~f-srk~~~~l~ 473 (809)
+.++|..+.+..+......... .+.+...... ......+...+... .+++++||+ +++.++.++
T Consensus 160 ~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~ 239 (358)
T TIGR01587 160 LMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFY 239 (358)
T ss_pred EEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHH
Confidence 5666666655555433221100 0111000000 00111222223222 345666666 468999999
Q ss_pred HHHHHhc-CCeEEEEeCCCCHHHHHHH----HHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCH
Q 003587 474 MAIEKHT-NHHCCVIYGALPPETRRQQ----ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPG 548 (809)
Q Consensus 474 ~~L~~~~-g~~v~~lhg~l~~~~R~~~----~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~ 548 (809)
..|.+.. ...+..+||++++.+|.++ ++.|+ +++..|||||+++++|||+|++.||++.. +.
T Consensus 240 ~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~--~~~~~ilvaT~~~~~GiDi~~~~vi~~~~-----------~~ 306 (358)
T TIGR01587 240 QQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMK--KNEKFVIVATQVIEASLDISADVMITELA-----------PI 306 (358)
T ss_pred HHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhc--CCCCeEEEECcchhceeccCCCEEEEcCC-----------CH
Confidence 9998742 2369999999999999764 88898 79999999999999999999999999866 57
Q ss_pred hHHHHHHcccCCCCCCC-CceEEEEEecc
Q 003587 549 SQVKQIAGRAGRRGSIY-PDGLTTTLNLD 576 (809)
Q Consensus 549 ~~y~Qr~GRAGR~G~~~-~~G~~i~~~~~ 576 (809)
++|+||+||+||.|+.. +.|.++.|...
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 89999999999998732 24588888753
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.96 E-value=1.8e-28 Score=293.24 Aligned_cols=281 Identities=17% Similarity=0.212 Sum_probs=185.2
Q ss_pred HHHHhCCCCCCCcc--chhHHhhCC------CeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHH
Q 003587 272 AMIESADLTKPHTW--FPFARVMKR------KIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 272 ~~l~~~g~~~Pt~~--~p~~~~l~g------rdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
..+..++| .||+. ..+..+.++ .+++++||||||||++++.++ ..+.+++|++||++||.|+++.++
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~ 331 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLK 331 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHH
Confidence 34456677 37762 233334544 489999999999999965554 356789999999999999999988
Q ss_pred hc----CCceeeeeccccccc---------c-cCcceeeeeeecccC---CcccEEEEecccccccccchhHHHHHHhhc
Q 003587 340 AL----GVYCSLLTGQEKKLV---------P-FSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (809)
Q Consensus 340 ~~----g~~~~l~~g~~~~~~---------~-~~~~i~~tie~lt~~---rlv~~vVIDEAH~i~d~~~g~~~~~ill~l 402 (809)
++ |+.+.+++|...... . ....+++|+..+... ..++++||||+|++. ...+..+...
T Consensus 332 ~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg-----~~qr~~l~~~ 406 (681)
T PRK10917 332 KLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFG-----VEQRLALREK 406 (681)
T ss_pred HHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhh-----HHHHHHHHhc
Confidence 75 577888888754211 1 133445565544322 238999999999964 4445555444
Q ss_pred cc--ccccccCCchHHHHHHHHhhhcC----------CceEEeeccccchhhHhHHHHHHHHHh-cCCC-CEEEEech--
Q 003587 403 MA--DEIHLCGDPSVLDVVRKICSETG----------DELHEQHYERFKPLVVEAKTLLGDLRN-VRSG-DCVVAFSR-- 466 (809)
Q Consensus 403 ~~--~~i~l~~s~~~~~li~~l~~~~~----------~~~~~~~~~r~~~l~~~~k~ll~~l~~-~~~g-~~II~fsr-- 466 (809)
.. ..+.+.++|....+......... ...+...+.... ....+++.+.. ...+ +++||+..
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----~~~~~~~~i~~~~~~g~q~~v~~~~ie 482 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDS----RRDEVYERIREEIAKGRQAYVVCPLIE 482 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcc----cHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 32 22333344432222211111100 000111111000 11223233322 2333 45555531
Q ss_pred -------hHHHHHHHHHHHhc-CCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC
Q 003587 467 -------REIFEVKMAIEKHT-NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK 537 (809)
Q Consensus 467 -------k~~~~l~~~L~~~~-g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K 537 (809)
..+.+++..|.+.. +.++..+||+|++++|..+++.|+ +|+++|||||+++++|||+| ++.||++++++
T Consensus 483 ~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~--~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 483 ESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFK--AGEIDILVATTVIEVGVDVPNATVMVIENAER 560 (681)
T ss_pred cccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHH--cCCCCEEEECcceeeCcccCCCcEEEEeCCCC
Confidence 34567777777643 478999999999999999999999 89999999999999999998 99999999832
Q ss_pred CCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
| +.++|.||+|||||.|. .|+|++++.
T Consensus 561 ~--------gls~lhQ~~GRvGR~g~---~g~~ill~~ 587 (681)
T PRK10917 561 F--------GLAQLHQLRGRVGRGAA---QSYCVLLYK 587 (681)
T ss_pred C--------CHHHHHHHhhcccCCCC---ceEEEEEEC
Confidence 2 57899999999999998 899999995
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=9.7e-28 Score=282.80 Aligned_cols=360 Identities=19% Similarity=0.224 Sum_probs=237.6
Q ss_pred HHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH----cC--------CcEEEEcccHhHHHHHHHH
Q 003587 272 AMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EA--------KKGIYCSPLRLLAMEVFDK 337 (809)
Q Consensus 272 ~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~~--------~~~LvlsPtR~La~Q~~~~ 337 (809)
+.++.. |..||+ .++++.+.+|++++++||||||||++++.+++ .. -.+|||+|+|+|..++..+
T Consensus 14 ~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~r 92 (814)
T COG1201 14 EWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRR 92 (814)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHH
Confidence 455455 899998 45677789999999999999999999665543 22 1579999999999999999
Q ss_pred HHh----cCCceeeeeccccccc-----ccCcce-eeeeeec----ccCCc------ccEEEEecccccccccchhHHHH
Q 003587 338 VNA----LGVYCSLLTGQEKKLV-----PFSNHI-ACTVEMV----STDEM------YDVAVIDEIQMMSDACRGYAWTR 397 (809)
Q Consensus 338 l~~----~g~~~~l~~g~~~~~~-----~~~~~i-~~tie~l----t~~rl------v~~vVIDEAH~i~d~~~g~~~~~ 397 (809)
+.. +|+.+.+.+|+..... ...+++ .+|||.+ +..+. +.+|||||+|.+.+..+|.++.-
T Consensus 93 L~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl 172 (814)
T COG1201 93 LEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLAL 172 (814)
T ss_pred HHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhh
Confidence 875 5888889999865432 234444 4566533 33222 89999999999999999998775
Q ss_pred HHhhcc-----cccccccCCchHHHHHHHHhhhcC--CceEEeeccc------cch--h--------hHhHHHHHHHHHh
Q 003587 398 ALLGLM-----ADEIHLCGDPSVLDVVRKICSETG--DELHEQHYER------FKP--L--------VVEAKTLLGDLRN 454 (809)
Q Consensus 398 ill~l~-----~~~i~l~~s~~~~~li~~l~~~~~--~~~~~~~~~r------~~~--l--------~~~~k~ll~~l~~ 454 (809)
.+..|. ..++-+-++-.-...+.+++.... ..++...+.+ ..| . ....+.+.+.+++
T Consensus 173 ~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~ 252 (814)
T COG1201 173 SLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK 252 (814)
T ss_pred hHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh
Confidence 543332 223333232223333444443332 1222221111 011 1 0011233333333
Q ss_pred cCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEE
Q 003587 455 VRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVF 532 (809)
Q Consensus 455 ~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~ 532 (809)
+ . .++||. ||..++.++..|.+..+..+.++||+++.+.|..+.++|+ +|+.+++|||..++.|||+. |+.||+
T Consensus 253 ~-~-ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk--~G~lravV~TSSLELGIDiG~vdlVIq 328 (814)
T COG1201 253 H-R-TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLK--EGELKAVVATSSLELGIDIGDIDLVIQ 328 (814)
T ss_pred c-C-cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHh--cCCceEEEEccchhhccccCCceEEEE
Confidence 2 2 445555 6899999999999976689999999999999999999999 89999999999999999996 999999
Q ss_pred cCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH----HHHHHcCCchHHH--HhcCCCcHHHHHH
Q 003587 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY----LIECLKQPFEVVK--KVGLFPFFEQVEL 606 (809)
Q Consensus 533 ~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~----l~~~l~~~~~~~~--~~~~~p~~~~l~~ 606 (809)
++. |.++....||+||+|+.-...+.|.++.....|.-. ...+.....+.++ +.++--...++..
T Consensus 329 ~~S---------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg 399 (814)
T COG1201 329 LGS---------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVG 399 (814)
T ss_pred eCC---------cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHH
Confidence 999 999999999999999965544567777665322211 1122333333221 2222233445554
Q ss_pred HHhcCccchHHHHHHHHhhhcccCCccccCCcchHHHHHHHHHH
Q 003587 607 FAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650 (809)
Q Consensus 607 ~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~L~~ 650 (809)
.+... .....++.+..... ..|..-..+....+++.|..
T Consensus 400 ~~~~~-~~~~~~~y~~vrra----ypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 400 MALEK-VWEVEEAYRVVRRA----YPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHhhC-cCCHHHHHHHHHhc----cccccCCHHHHHHHHHHHhh
Confidence 44442 34455555544433 23445556778888888887
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=2.8e-28 Score=303.39 Aligned_cols=330 Identities=15% Similarity=0.174 Sum_probs=206.4
Q ss_pred EEcCCCChHHHHHHHHHH----c-------------CCcEEEEcccHhHHHHHHHHHHh----------------cCCce
Q 003587 299 HCGPTNSGKTYNALQRFM----E-------------AKKGIYCSPLRLLAMEVFDKVNA----------------LGVYC 345 (809)
Q Consensus 299 v~apTGSGKTl~~L~~L~----~-------------~~~~LvlsPtR~La~Q~~~~l~~----------------~g~~~ 345 (809)
++||||||||++++.+++ . +.++|||+|||+|+.|++++++. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999655432 1 24689999999999999998863 24567
Q ss_pred eeeeccccccc-----c-cCcceeeeeeec----ccC-----CcccEEEEecccccccccchhHHHHHHhhc----cccc
Q 003587 346 SLLTGQEKKLV-----P-FSNHIACTVEMV----STD-----EMYDVAVIDEIQMMSDACRGYAWTRALLGL----MADE 406 (809)
Q Consensus 346 ~l~~g~~~~~~-----~-~~~~i~~tie~l----t~~-----rlv~~vVIDEAH~i~d~~~g~~~~~ill~l----~~~~ 406 (809)
.+++|+..... . ....+++|++.+ +.. +.+++|||||+|++.+..||..+...+..+ ....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 77888754322 1 234556677643 221 128999999999999888888765444322 3334
Q ss_pred ccccCCchHHHHHHHHhhhcCC--ce-EE----------eeccccch---hh--------------H-h-----HHHHHH
Q 003587 407 IHLCGDPSVLDVVRKICSETGD--EL-HE----------QHYERFKP---LV--------------V-E-----AKTLLG 450 (809)
Q Consensus 407 i~l~~s~~~~~li~~l~~~~~~--~~-~~----------~~~~r~~~---l~--------------~-~-----~k~ll~ 450 (809)
+.+..++|+.+. +.++..... .. ++ ..+..... .. . . ...++.
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 455555554331 222222211 11 10 00000000 00 0 0 001222
Q ss_pred HHHhcCCCCEEEEe-chhHHHHHHHHHHHhcC--------------------------------CeEEEEeCCCCHHHHH
Q 003587 451 DLRNVRSGDCVVAF-SRREIFEVKMAIEKHTN--------------------------------HHCCVIYGALPPETRR 497 (809)
Q Consensus 451 ~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g--------------------------------~~v~~lhg~l~~~~R~ 497 (809)
.+. ....+|||+ ||+.|+.++..|.+... ..+.++||+|++++|.
T Consensus 240 ~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 240 EVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 221 234566666 57899999998875311 1267899999999999
Q ss_pred HHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 498 QQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 498 ~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
.+++.|+ +|+++|||||+++++|||++ |++||+++. |.|+.+|+||+|||||.... .+.++.+...
T Consensus 318 ~IE~~fK--~G~LrvLVATssLELGIDIg~VDlVIq~gs---------P~sVas~LQRiGRAGR~~gg--~s~gli~p~~ 384 (1490)
T PRK09751 318 ITEQALK--SGELRCVVATSSLELGIDMGAVDLVIQVAT---------PLSVASGLQRIGRAGHQVGG--VSKGLFFPRT 384 (1490)
T ss_pred HHHHHHH--hCCceEEEeCcHHHccCCcccCCEEEEeCC---------CCCHHHHHHHhCCCCCCCCC--ccEEEEEeCc
Confidence 9999999 89999999999999999998 999999999 99999999999999996331 3455533332
Q ss_pred cHHH------HHHHHcCCchHHHHhcCCC---cHHHHHHHHhcCccchHHHHHHHHhhhcccCCccccCCcchHHHHHHH
Q 003587 577 DLDY------LIECLKQPFEVVKKVGLFP---FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANM 647 (809)
Q Consensus 577 d~~~------l~~~l~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~ 647 (809)
..+. +..++...++++.. ...| ...++...+.. ......++.+.+... ..|.....+....+.++
T Consensus 385 r~dlle~~~~ve~~l~g~iE~~~~-p~nplDVLaqqiva~a~~-~~~~~d~l~~~vrra----~pf~~L~~~~f~~vl~~ 458 (1490)
T PRK09751 385 RRDLVDSAVIVECMFAGRLENLTP-PHNPLDVLAQQTVAAAAM-DALQVDEWYSRVRRA----APWKDLPRRVFDATLDM 458 (1490)
T ss_pred HHHHHhhHHHHHHHhcCCCCccCC-CCChHHHHHHHHHHHHhc-CCCCHHHHHHHhhcc----CCcccCCHHHHHHHHHH
Confidence 2221 12344444444321 1112 24555555554 446666776666543 34455566677777777
Q ss_pred HHH
Q 003587 648 LEK 650 (809)
Q Consensus 648 L~~ 650 (809)
|..
T Consensus 459 L~~ 461 (1490)
T PRK09751 459 LSG 461 (1490)
T ss_pred Hhc
Confidence 764
No 61
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.9e-28 Score=270.35 Aligned_cols=301 Identities=22% Similarity=0.283 Sum_probs=207.7
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHHcCC----cEEEEc-ccHhHHHHHHHHHHhc-CCceeeeecccccccccCcceee
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAK----KGIYCS-PLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLVPFSNHIAC 364 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~~~~----~~Lvls-PtR~La~Q~~~~l~~~-g~~~~l~~g~~~~~~~~~~~i~~ 364 (809)
+-+++.+|++|+||||||++..+.|.++| ..|.|+ |+|..|..+++++... |...+-.+|...+-...... .+
T Consensus 63 ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~-~T 141 (674)
T KOG0922|consen 63 VEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSK-DT 141 (674)
T ss_pred HHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCC-ce
Confidence 36788999999999999999989887654 226666 9999999999999763 44444444444432221111 12
Q ss_pred eeeecccCCc------------ccEEEEecccccccccchhHHHHHHhhcccccc-------cccCCchH--HHHHHHHh
Q 003587 365 TVEMVSTDEM------------YDVAVIDEIQMMSDACRGYAWTRALLGLMADEI-------HLCGDPSV--LDVVRKIC 423 (809)
Q Consensus 365 tie~lt~~rl------------v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i-------~l~~s~~~--~~li~~l~ 423 (809)
-+.++|.|-+ +++|||||||+.. ..+++++|+..+.+ .++.+++. .....-+.
T Consensus 142 rikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERs------l~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~ 215 (674)
T KOG0922|consen 142 RIKYMTDGMLLREILKDPLLSKYSVIILDEAHERS------LHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFN 215 (674)
T ss_pred eEEEecchHHHHHHhcCCccccccEEEEechhhhh------hHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhc
Confidence 2334444322 8999999999987 56777777654321 12334442 22222111
Q ss_pred h-----hcCCc--eEEeeccccchhhHhH--HHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHHhcC-------CeEEE
Q 003587 424 S-----ETGDE--LHEQHYERFKPLVVEA--KTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHTN-------HHCCV 486 (809)
Q Consensus 424 ~-----~~~~~--~~~~~~~r~~~l~~~~--k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g-------~~v~~ 486 (809)
. -.+.. +.+.+.......+++. ..+++++...++|+++||.+ +.+++.++..|.+..+ .-+.+
T Consensus 216 ~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lp 295 (674)
T KOG0922|consen 216 NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILP 295 (674)
T ss_pred CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeee
Confidence 1 01111 1111111222233332 35677778889999999997 5788888887766321 13578
Q ss_pred EeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHHHHc
Q 003587 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAG 556 (809)
Q Consensus 487 lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Qr~G 556 (809)
+||.||.+++.+++..- |.|..+|++||++++..|.|| |++||+.|+.| ||+. ...|.|.++..||+|
T Consensus 296 ly~aL~~e~Q~rvF~p~--p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaG 373 (674)
T KOG0922|consen 296 LYGALPSEEQSRVFDPA--PPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAG 373 (674)
T ss_pred ecccCCHHHhhccccCC--CCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcc
Confidence 99999999776665554 479999999999999999998 99999999986 7765 478999999999999
Q ss_pred ccCCCCCCCCceEEEEEecccHHHHHHHHcCCchHHHHhcCCCcHHHHHH
Q 003587 557 RAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVEL 606 (809)
Q Consensus 557 RAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~~~~~~~~~~~~p~~~~l~~ 606 (809)
||||.|+ |.||.+|+++.- .++...+.+++.+..+....-+|..
T Consensus 374 RAGRt~p----GkcyRLYte~~~--~~~~~~~~PEI~R~~Ls~~vL~Lka 417 (674)
T KOG0922|consen 374 RAGRTGP----GKCYRLYTESAY--DKMPLQTVPEIQRVNLSSAVLQLKA 417 (674)
T ss_pred cCCCCCC----ceEEEeeeHHHH--hhcccCCCCceeeechHHHHHHHHh
Confidence 9999998 999999987643 6777778888888877555555544
No 62
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.95 E-value=3.1e-27 Score=289.49 Aligned_cols=294 Identities=19% Similarity=0.218 Sum_probs=178.3
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHHcCC---c-EEEEc-ccH----hHHHHHHHHHHh-cCCceeeeecccccccccCc
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAK---K-GIYCS-PLR----LLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSN 360 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~~~~---~-~Lvls-PtR----~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~~~~ 360 (809)
+..++.++++|+||||||++..+.+...+ . .|+|+ |.| +||.++++.+.. +|..++....-+........
T Consensus 86 i~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~s~~t~ 165 (1294)
T PRK11131 86 IRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTM 165 (1294)
T ss_pred HHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccccCCCCC
Confidence 35677888999999999997554555432 2 34554 865 555555555543 34444332211111111222
Q ss_pred ceeeeeeecc----cC---CcccEEEEecccc-cccccchhHHHHHHhhcccccccccCCchHHHHHHHHhhhcCCceE-
Q 003587 361 HIACTVEMVS----TD---EMYDVAVIDEIQM-MSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELH- 431 (809)
Q Consensus 361 ~i~~tie~lt----~~---rlv~~vVIDEAH~-i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~- 431 (809)
.+++|+-++- .. ..+++|||||||+ +++.+|-...-..++...++...++.++|... ..+........+
T Consensus 166 I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~--e~fs~~F~~apvI 243 (1294)
T PRK11131 166 VKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDP--ERFSRHFNNAPII 243 (1294)
T ss_pred EEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCH--HHHHHHcCCCCEE
Confidence 3344432211 00 1189999999995 67766654332223222233445555665421 122222221111
Q ss_pred ---------EeeccccchhhH--hH---HHHH---HHHHhcCCCCEEEEec-hhHHHHHHHHHHHhcCC---eEEEEeCC
Q 003587 432 ---------EQHYERFKPLVV--EA---KTLL---GDLRNVRSGDCVVAFS-RREIFEVKMAIEKHTNH---HCCVIYGA 490 (809)
Q Consensus 432 ---------~~~~~r~~~l~~--~~---k~ll---~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g~---~v~~lhg~ 490 (809)
...|........ .. ..++ ..+....+|+++||++ ..++..++..|.+. +. .+.++||+
T Consensus 244 ~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~-~~~~~~VlpLhg~ 322 (1294)
T PRK11131 244 EVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL-NLRHTEILPLYAR 322 (1294)
T ss_pred EEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc-CCCcceEeecccC
Confidence 112211100000 01 1222 2233445678888885 68999999999874 43 47899999
Q ss_pred CCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHHHHcccCC
Q 003587 491 LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGR 560 (809)
Q Consensus 491 l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Qr~GRAGR 560 (809)
|++++|..+++. .|..+||||||++++||||| |++||++|..| ||.. ...|.|.++|.||+|||||
T Consensus 323 Ls~~eQ~~Vf~~----~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR 398 (1294)
T PRK11131 323 LSNSEQNRVFQS----HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 398 (1294)
T ss_pred CCHHHHHHHhcc----cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCC
Confidence 999999888764 47899999999999999998 99999999765 6543 3567899999999999999
Q ss_pred CCCCCCceEEEEEecccHHHHHHHHcCCchHHHHhcC
Q 003587 561 RGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597 (809)
Q Consensus 561 ~G~~~~~G~~i~~~~~d~~~l~~~l~~~~~~~~~~~~ 597 (809)
.+. |.||.||+++.. ..+-+.+.|++.+..+
T Consensus 399 ~~~----G~c~rLyte~d~--~~~~~~~~PEIlR~~L 429 (1294)
T PRK11131 399 VSE----GICIRLYSEDDF--LSRPEFTDPEILRTNL 429 (1294)
T ss_pred CCC----cEEEEeCCHHHH--HhhhcccCCccccCCH
Confidence 965 999999986542 2333445666766655
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=1.9e-27 Score=281.71 Aligned_cols=268 Identities=18% Similarity=0.148 Sum_probs=175.1
Q ss_pred CCCCCCCccc--hhHHhhCCC-eEEEEcCCCChHHHHHHHHHH---c---CCcEE-EEcccHhHHHHHHHHHHhcCCc--
Q 003587 277 ADLTKPHTWF--PFARVMKRK-IIYHCGPTNSGKTYNALQRFM---E---AKKGI-YCSPLRLLAMEVFDKVNALGVY-- 344 (809)
Q Consensus 277 ~g~~~Pt~~~--p~~~~l~gr-dviv~apTGSGKTl~~L~~L~---~---~~~~L-vlsPtR~La~Q~~~~l~~~g~~-- 344 (809)
.||+ |+|++ .++.++.|+ ++++.+|||||||.++..+++ . .++.| +++|||+||.|+++.+.+++..
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 6888 99843 455578998 577789999999996433322 1 23444 5779999999999999876532
Q ss_pred -------------------------eeeeecc-cccc----cccC-cceeeeeeecccCCc-------------------
Q 003587 345 -------------------------CSLLTGQ-EKKL----VPFS-NHIACTVEMVSTDEM------------------- 374 (809)
Q Consensus 345 -------------------------~~l~~g~-~~~~----~~~~-~~i~~tie~lt~~rl------------------- 374 (809)
+..+.|. .... .+.. ..++.|++++....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 2333333 2221 1122 245567655433321
Q ss_pred -ccEEEEecccccccccchhHHHHHHhhc--ccc---cccccCCchHHHHHHHHhhhcC-Cc-------------eEEee
Q 003587 375 -YDVAVIDEIQMMSDACRGYAWTRALLGL--MAD---EIHLCGDPSVLDVVRKICSETG-DE-------------LHEQH 434 (809)
Q Consensus 375 -v~~vVIDEAH~i~d~~~g~~~~~ill~l--~~~---~i~l~~s~~~~~li~~l~~~~~-~~-------------~~~~~ 434 (809)
+.++|||||| ++++|..++..++..+ +.. .+.+++++|....+..+..... .. .+.+.
T Consensus 171 ~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 171 QDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred cceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 7899999999 6788999888888864 332 3666777765432222221111 01 11111
Q ss_pred ccccchhhHhHHHHHH---HHHhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH-----HHHHHhhc
Q 003587 435 YERFKPLVVEAKTLLG---DLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRR-----QQANLFND 505 (809)
Q Consensus 435 ~~r~~~l~~~~k~ll~---~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~-----~~~~~F~~ 505 (809)
+. . +.......++. .+.....+.++||+ +++.+..++..|.+. ++ ..+||+|++.+|. .+++.|+.
T Consensus 249 v~-v-~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~--~lLHG~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 249 VP-P-SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KF--ELLTGTLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred Ee-c-ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CC--eEeeCCCCHHHHhhHHHHHHHHHHhc
Confidence 10 0 00000111111 12223445677776 468999999999875 54 8999999999999 78999972
Q ss_pred C--CCC-------eEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCC
Q 003587 506 Q--DNE-------FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (809)
Q Consensus 506 ~--~g~-------~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (809)
. .++ ..|||||+++++||||+.++||++.. | .++|+||+||+||.|.
T Consensus 324 ~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~a---------P--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 324 QMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLA---------P--FESMQQRFGRVNRFGE 379 (844)
T ss_pred cccccccccccccceEEeccchhhhcccCCcceEEECCC---------C--HHHHHHHhcccCCCCC
Confidence 0 032 68999999999999999899999766 4 6999999999999997
No 64
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=3e-27 Score=290.62 Aligned_cols=293 Identities=17% Similarity=0.212 Sum_probs=190.0
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHcCC---c-EEEEc-ccHhHHHHHHHHHHh-cCCceeeeecccccccccCcceeee
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFMEAK---K-GIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSNHIACT 365 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~~~---~-~Lvls-PtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~~~~~i~~t 365 (809)
.+++.+|++|+||||||+...+.++..+ . .|+++ |.|..|..++.++.+ +|..++-..|...+...... -.+.
T Consensus 80 ~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s-~~T~ 158 (1283)
T TIGR01967 80 AENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVS-SNTL 158 (1283)
T ss_pred HhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccC-CCce
Confidence 4677899999999999998666665432 2 24444 999999999998876 46666666665433221100 0112
Q ss_pred eeecccCCc------------ccEEEEecccc-cccccchhHHHHHHhhcccccccccCCchHHHHHHHHhhhcCCceEE
Q 003587 366 VEMVSTDEM------------YDVAVIDEIQM-MSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE 432 (809)
Q Consensus 366 ie~lt~~rl------------v~~vVIDEAH~-i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~ 432 (809)
+.++|+|.+ +++|||||||+ .++.++...+...++...++...++.++|... ..+....+...++
T Consensus 159 I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~--~~fa~~F~~apvI 236 (1283)
T TIGR01967 159 VKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDP--ERFSRHFNNAPII 236 (1283)
T ss_pred eeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCH--HHHHHHhcCCCEE
Confidence 333333322 89999999995 77776665544434444444344455555321 2222222211111
Q ss_pred ----------eeccccchhh----Hh-HHH---HHHHHHhcCCCCEEEEec-hhHHHHHHHHHHHhc--CCeEEEEeCCC
Q 003587 433 ----------QHYERFKPLV----VE-AKT---LLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHT--NHHCCVIYGAL 491 (809)
Q Consensus 433 ----------~~~~r~~~l~----~~-~k~---ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~--g~~v~~lhg~l 491 (809)
..|....... .. ... ++..+....+|+++||++ ..+++.++..|.+.. +..+.++||+|
T Consensus 237 ~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~L 316 (1283)
T TIGR01967 237 EVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARL 316 (1283)
T ss_pred EECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCC
Confidence 1111110000 00 011 222333346788888885 689999999998642 35689999999
Q ss_pred CHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHHHHcccCCC
Q 003587 492 PPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRR 561 (809)
Q Consensus 492 ~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~ 561 (809)
++++|.++++.+ +..+||||||++++||||| |++||++|++| ||.. ...|.|.++|.||+|||||.
T Consensus 317 s~~eQ~~vf~~~----~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~ 392 (1283)
T TIGR01967 317 SNKEQQRVFQPH----SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 392 (1283)
T ss_pred CHHHHHHHhCCC----CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCC
Confidence 999998885443 3479999999999999998 99999999875 6554 35688999999999999999
Q ss_pred CCCCCceEEEEEecccHHHHHHHHcCCchHHHHhcC
Q 003587 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597 (809)
Q Consensus 562 G~~~~~G~~i~~~~~d~~~l~~~l~~~~~~~~~~~~ 597 (809)
|. |.||.||+++... .+...+.|++.+..+
T Consensus 393 ~~----G~cyRLyte~~~~--~~~~~~~PEIlR~~L 422 (1283)
T TIGR01967 393 AP----GICIRLYSEEDFN--SRPEFTDPEILRTNL 422 (1283)
T ss_pred CC----ceEEEecCHHHHH--hhhhccCcccccccH
Confidence 97 9999999866432 333445666666554
No 65
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.95 E-value=2.5e-27 Score=260.39 Aligned_cols=301 Identities=23% Similarity=0.295 Sum_probs=214.9
Q ss_pred HHHHHHhCCCCCCCccchhH---HhhCCCeEEEEcCCCChHHHHH----HHHHHc-CCcEEEEcccHhHHHHHHHHHHh-
Q 003587 270 FRAMIESADLTKPHTWFPFA---RVMKRKIIYHCGPTNSGKTYNA----LQRFME-AKKGIYCSPLRLLAMEVFDKVNA- 340 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~~~p~~---~~l~grdviv~apTGSGKTl~~----L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~- 340 (809)
+...++..|++...|.+..+ -++.|+|.+++.+|+||||++. ++.++. +++.||++|+.+||+|-++.|+.
T Consensus 205 fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~r 284 (830)
T COG1202 205 FKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKER 284 (830)
T ss_pred HHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHH
Confidence 44678899999988854432 2579999999999999999982 455555 78999999999999999998875
Q ss_pred ---cCCceeeeecccccc----------cccCcceeeeeee----cccCCc---ccEEEEecccccccccchhHHHHHHh
Q 003587 341 ---LGVYCSLLTGQEKKL----------VPFSNHIACTVEM----VSTDEM---YDVAVIDEIQMMSDACRGYAWTRALL 400 (809)
Q Consensus 341 ---~g~~~~l~~g~~~~~----------~~~~~~i~~tie~----lt~~rl---v~~vVIDEAH~i~d~~~g~~~~~ill 400 (809)
+|..+.+..|..... .+.+..++.|.|= +..+.. +..|||||+|++-|..+|+.+--.+.
T Consensus 285 Ys~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~ 364 (830)
T COG1202 285 YSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIG 364 (830)
T ss_pred hhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHH
Confidence 477777766654321 1234556666542 222222 89999999999999999988664443
Q ss_pred hc---ccccccccCCchHHHHHHHHhhhcCCceEEeeccccchhh---------HhHHHHHHHH---------HhcCCCC
Q 003587 401 GL---MADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLV---------VEAKTLLGDL---------RNVRSGD 459 (809)
Q Consensus 401 ~l---~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~r~~~l~---------~~~k~ll~~l---------~~~~~g~ 459 (809)
.+ .+..+.+--++++- .-..++...+..++.. -.|+.|+. .++..++..| .....|+
T Consensus 365 RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y-~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQ 442 (830)
T COG1202 365 RLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLY-DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQ 442 (830)
T ss_pred HHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEee-cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCc
Confidence 22 22222222222221 1122344444444322 22333321 1111222222 1234577
Q ss_pred EEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCC
Q 003587 460 CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKY 538 (809)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~ 538 (809)
+|||. ||+.|..++..|... |+++.+||+|||..+|..+...|. ++++.++|+|.+++.|+|+|...||+-.+.
T Consensus 443 tIVFT~SRrr~h~lA~~L~~k-G~~a~pYHaGL~y~eRk~vE~~F~--~q~l~~VVTTAAL~AGVDFPASQVIFEsLa-- 517 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGK-GLKAAPYHAGLPYKERKSVERAFA--AQELAAVVTTAALAAGVDFPASQVIFESLA-- 517 (830)
T ss_pred eEEEecchhhHHHHHHHhhcC-CcccccccCCCcHHHHHHHHHHHh--cCCcceEeehhhhhcCCCCchHHHHHHHHH--
Confidence 77776 799999999999886 999999999999999999999998 899999999999999999999999987652
Q ss_pred CCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH
Q 003587 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (809)
Q Consensus 539 dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~ 580 (809)
.+..|.|+.+|.|+.|||||.+- +..|.+|+++.+...+
T Consensus 518 --MG~~WLs~~EF~QM~GRAGRp~y-HdrGkVyllvepg~~Y 556 (830)
T COG1202 518 --MGIEWLSVREFQQMLGRAGRPDY-HDRGKVYLLVEPGKKY 556 (830)
T ss_pred --cccccCCHHHHHHHhcccCCCCc-ccCceEEEEecCChhh
Confidence 13459999999999999999986 5689999998765444
No 66
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=258.95 Aligned_cols=295 Identities=23% Similarity=0.301 Sum_probs=203.6
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHHcCC----cEEEEc-ccHhHHHHHHHHHHh-cCCceeeeecccccccccCcceee
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAK----KGIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSNHIAC 364 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~~~~----~~Lvls-PtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~~~~~i~~ 364 (809)
+-.++.|+++|+||||||++..+.|++.| ..|.|+ |+|..|..++.++.. +|...+...|..++-..... -.+
T Consensus 368 ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~-~~T 446 (1042)
T KOG0924|consen 368 IRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTS-EDT 446 (1042)
T ss_pred HhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCC-Cce
Confidence 35688999999999999999889888766 346666 999999999999976 46666655565544221111 011
Q ss_pred eeeecccCCc------------ccEEEEecccccccccchhHHHHHHhhccccc------c-cccCCchHHHHHHHHhhh
Q 003587 365 TVEMVSTDEM------------YDVAVIDEIQMMSDACRGYAWTRALLGLMADE------I-HLCGDPSVLDVVRKICSE 425 (809)
Q Consensus 365 tie~lt~~rl------------v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~------i-~l~~s~~~~~li~~l~~~ 425 (809)
-+.++|.+-+ +++||+||||..+ ..+.++.|+.... + .+..++++. +++++..
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs------lNtDilfGllk~~larRrdlKliVtSATm~--a~kf~nf 518 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS------LNTDILFGLLKKVLARRRDLKLIVTSATMD--AQKFSNF 518 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcc------cchHHHHHHHHHHHHhhccceEEEeecccc--HHHHHHH
Confidence 1334444322 8999999999986 3445555553321 1 223344321 2233333
Q ss_pred cCCceEEeeccc-----------cchhhHhH--HHHHHHHHhcCCCCEEEEech-hH----HHHHHHHHHHh-----cCC
Q 003587 426 TGDELHEQHYER-----------FKPLVVEA--KTLLGDLRNVRSGDCVVAFSR-RE----IFEVKMAIEKH-----TNH 482 (809)
Q Consensus 426 ~~~~~~~~~~~r-----------~~~l~~~~--k~ll~~l~~~~~g~~II~fsr-k~----~~~l~~~L~~~-----~g~ 482 (809)
.+.-.....-.| ....+++. ++.+.+.....+|+++||.+. .+ +..+...|.+. .++
T Consensus 519 Fgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L 598 (1042)
T KOG0924|consen 519 FGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDL 598 (1042)
T ss_pred hCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCce
Confidence 331111111111 11222322 355556666788999999974 33 34444444431 267
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHH
Q 003587 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVK 552 (809)
Q Consensus 483 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~ 552 (809)
.|.++|+.||.+.+.++++.-. .|..+|+|||++++..|.|| |.+||+.+..| ||.. ...|+|.++..
T Consensus 599 ~vlpiYSQLp~dlQ~kiFq~a~--~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 599 AVLPIYSQLPADLQAKIFQKAE--GGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred EEEeehhhCchhhhhhhcccCC--CCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 8999999999997766666554 79999999999999999998 99999999876 6644 58899999999
Q ss_pred HHHcccCCCCCCCCceEEEEEecccHHHHHHHHcCCchHHHHhcCCCcH
Q 003587 553 QIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFF 601 (809)
Q Consensus 553 Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~~~~~~~~~~~~p~~ 601 (809)
||+|||||.|+ |.||.+|+.+ .+..+++..+.|+|++..+...+
T Consensus 677 QRaGRAGRt~p----G~cYRlYTe~-ay~~eml~stvPEIqRTNl~nvV 720 (1042)
T KOG0924|consen 677 QRAGRAGRTGP----GTCYRLYTED-AYKNEMLPSTVPEIQRTNLSNVV 720 (1042)
T ss_pred hhccccCCCCC----cceeeehhhh-HHHhhcccCCCchhhhcchhhHH
Confidence 99999999998 9999999765 57788999999999988764333
No 67
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=2.3e-26 Score=291.00 Aligned_cols=297 Identities=14% Similarity=0.149 Sum_probs=190.1
Q ss_pred HHHHHHh-CCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHH-HHHHH---cCCcEEEEcccHhHHHHHHHHHHhcC
Q 003587 270 FRAMIES-ADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNA-LQRFM---EAKKGIYCSPLRLLAMEVFDKVNALG 342 (809)
Q Consensus 270 i~~~l~~-~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~-L~~L~---~~~~~LvlsPtR~La~Q~~~~l~~~g 342 (809)
+.+.++. .|| .|++ ...++++++|+|++++||||||||+++ +.++. .++++|||+|||+||.|+++.++.++
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~ 146 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFC 146 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 3344544 899 5888 334555899999999999999999973 22332 45689999999999999999999864
Q ss_pred ------Cceeeeeccccccc---------c-cCcceeeeeeecccC------CcccEEEEeccccccc-----------c
Q 003587 343 ------VYCSLLTGQEKKLV---------P-FSNHIACTVEMVSTD------EMYDVAVIDEIQMMSD-----------A 389 (809)
Q Consensus 343 ------~~~~l~~g~~~~~~---------~-~~~~i~~tie~lt~~------rlv~~vVIDEAH~i~d-----------~ 389 (809)
+.+..++|...... . ....+++|+..+... ..++++||||||+|++ +
T Consensus 147 ~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~ll 226 (1638)
T PRK14701 147 EKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLL 226 (1638)
T ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcC
Confidence 23344555432211 0 123455566544321 2279999999999987 3
Q ss_pred cchhHHHH----HHh----------------------hcccccc-cccCCchHH--HHHHHHhhhcC----------Cce
Q 003587 390 CRGYAWTR----ALL----------------------GLMADEI-HLCGDPSVL--DVVRKICSETG----------DEL 430 (809)
Q Consensus 390 ~~g~~~~~----ill----------------------~l~~~~i-~l~~s~~~~--~li~~l~~~~~----------~~~ 430 (809)
||..+... ++. .++...+ .++++++.. ..+..+..... ...
T Consensus 227 GF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~ 306 (1638)
T PRK14701 227 GFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRN 306 (1638)
T ss_pred CChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCC
Confidence 56555543 211 1122222 445565543 12222222110 112
Q ss_pred EEeeccccchhhHhHHHHHHHHHhcCCCCEEEEe-chhH---HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcC
Q 003587 431 HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SRRE---IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506 (809)
Q Consensus 431 ~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~f-srk~---~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~ 506 (809)
+.+.|...... ....++..+..... ..|||+ +++. +++++..|.+. |+++..+||+ |..+++.|+
T Consensus 307 i~~~yi~~~~~--~k~~L~~ll~~~g~-~gIVF~~t~~~~e~ae~la~~L~~~-Gi~a~~~h~~-----R~~~l~~F~-- 375 (1638)
T PRK14701 307 IVDVYLNPEKI--IKEHVRELLKKLGK-GGLIFVPIDEGAEKAEEIEKYLLED-GFKIELVSAK-----NKKGFDLFE-- 375 (1638)
T ss_pred cEEEEEECCHH--HHHHHHHHHHhCCC-CeEEEEeccccchHHHHHHHHHHHC-CCeEEEecch-----HHHHHHHHH--
Confidence 22333211111 11355566655543 445555 5543 58999999885 9999999995 889999999
Q ss_pred CCCeEEEEec----cccccccccc--ccEEEEcCCCCCCCCCcccCCHhHHHHHH-------------cccCCCCCCCCc
Q 003587 507 DNEFDVLVAS----DAVGMGLNLN--IRRVVFYSLSKYNGDKIIPVPGSQVKQIA-------------GRAGRRGSIYPD 567 (809)
Q Consensus 507 ~g~~~ILVAT----dal~~GIDip--V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~-------------GRAGR~G~~~~~ 567 (809)
+|+++||||| ++++||||+| |++|||+|+|||. .+++.|.|.. |||||.|. .
T Consensus 376 ~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~------~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~---~ 446 (1638)
T PRK14701 376 EGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFR------FRVDLEDPTIYRILGLLSEILKIEEELKEGI---P 446 (1638)
T ss_pred cCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCC------cchhhcccchhhhhcchHHHHHhhhhcccCC---c
Confidence 8999999999 5899999997 9999999995531 1677666666 99999998 5
Q ss_pred eEEEEEe-cccHHHHHHHHcC
Q 003587 568 GLTTTLN-LDDLDYLIECLKQ 587 (809)
Q Consensus 568 G~~i~~~-~~d~~~l~~~l~~ 587 (809)
+.++..+ ..+...+.+++..
T Consensus 447 ~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 447 IEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred chhHHHhHHHHHHHHHHHhcc
Confidence 6665443 3444555555544
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=6.8e-26 Score=281.34 Aligned_cols=268 Identities=17% Similarity=0.162 Sum_probs=172.8
Q ss_pred hCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhcCCce----
Q 003587 276 SADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVYC---- 345 (809)
Q Consensus 276 ~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~---- 345 (809)
..|+ .|++ ...+++++.|+|++++||||||||+.++..+ ..++++|||+|||+||.|+++++..++...
T Consensus 76 ~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~ 154 (1176)
T PRK09401 76 KTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGV 154 (1176)
T ss_pred hcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceE
Confidence 3566 6777 2234448999999999999999997643322 146789999999999999999999886543
Q ss_pred eeeecccc------ccc------ccCcceeeeeeeccc------CCcccEEEEeccccccc-----------ccch-hHH
Q 003587 346 SLLTGQEK------KLV------PFSNHIACTVEMVST------DEMYDVAVIDEIQMMSD-----------ACRG-YAW 395 (809)
Q Consensus 346 ~l~~g~~~------~~~------~~~~~i~~tie~lt~------~rlv~~vVIDEAH~i~d-----------~~~g-~~~ 395 (809)
.++.|... ... .....+++|+..+.. ...++++||||||++++ +||. .++
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHH
Confidence 33333211 100 112344556533221 11289999999999986 5553 455
Q ss_pred HHHHhhccc------------------------ccccccCCchHHH-HHH-HHhhhc----------CCceEEeeccccc
Q 003587 396 TRALLGLMA------------------------DEIHLCGDPSVLD-VVR-KICSET----------GDELHEQHYERFK 439 (809)
Q Consensus 396 ~~ill~l~~------------------------~~i~l~~s~~~~~-li~-~l~~~~----------~~~~~~~~~~r~~ 439 (809)
..++..++. ..+.+++++|..+ .+. .+.... ....+.+.|....
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~ 314 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDE 314 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcc
Confidence 555544443 3456666666532 111 111111 0112233332111
Q ss_pred hhhHhHHHHHHHHHhcCCCCEEEEe-chhH---HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEe
Q 003587 440 PLVVEAKTLLGDLRNVRSGDCVVAF-SRRE---IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515 (809)
Q Consensus 440 ~l~~~~k~ll~~l~~~~~g~~II~f-srk~---~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVA 515 (809)
.....+...+.... ...+||+ +++. +++++..|... |+++..+||+| .+.+++|+ +|+++||||
T Consensus 315 ---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~-gi~v~~~hg~l-----~~~l~~F~--~G~~~VLVa 382 (1176)
T PRK09401 315 ---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDL-GINAELAISGF-----ERKFEKFE--EGEVDVLVG 382 (1176)
T ss_pred ---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHC-CCcEEEEeCcH-----HHHHHHHH--CCCCCEEEE
Confidence 11234555555444 4566666 4455 99999999885 99999999999 23469999 899999999
Q ss_pred ----ccccccccccc--ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccC
Q 003587 516 ----SDAVGMGLNLN--IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559 (809)
Q Consensus 516 ----Tdal~~GIDip--V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAG 559 (809)
||+++||||+| |++|||||+|+|--. -...+.|.||+||+-
T Consensus 383 tas~tdv~aRGIDiP~~IryVI~y~vP~~~~~---~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 383 VASYYGVLVRGIDLPERIRYAIFYGVPKFKFS---LEEELAPPFLLLRLL 429 (1176)
T ss_pred ecCCCCceeecCCCCcceeEEEEeCCCCEEEe---ccccccCHHHHHHHH
Confidence 69999999997 899999999542100 114577899999984
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=3.2e-25 Score=257.20 Aligned_cols=276 Identities=15% Similarity=0.176 Sum_probs=176.0
Q ss_pred CCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHH----HHcCC-cEEEEcccHhHHHHHHHHHHhcCCc----e-eee
Q 003587 281 KPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQR----FMEAK-KGIYCSPLRLLAMEVFDKVNALGVY----C-SLL 348 (809)
Q Consensus 281 ~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~----L~~~~-~~LvlsPtR~La~Q~~~~l~~~g~~----~-~l~ 348 (809)
.|++ ..++..++.+++.++++|||+|||+++... +.... ++|||+||++|+.|+.+++.+++.. + .+.
T Consensus 114 ~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~ 193 (501)
T PHA02558 114 EPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIY 193 (501)
T ss_pred CCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEe
Confidence 4544 334556788899999999999999984322 22333 8999999999999999999987532 2 334
Q ss_pred ecccccccccCcceeeeeeecccC-----CcccEEEEecccccccccchhHHHHHHhhcccc--cccccCCchHHH--H-
Q 003587 349 TGQEKKLVPFSNHIACTVEMVSTD-----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD--EIHLCGDPSVLD--V- 418 (809)
Q Consensus 349 ~g~~~~~~~~~~~i~~tie~lt~~-----rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~--~i~l~~s~~~~~--l- 418 (809)
+|.... .....+++|+..+... ..++++||||||++... .+..++..++.. .+.++++|.... .
T Consensus 194 ~g~~~~--~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~~ 267 (501)
T PHA02558 194 SGTAKD--TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANIL 267 (501)
T ss_pred cCcccC--CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccHH
Confidence 443221 2234455665443211 23899999999999854 455555555322 233444443110 0
Q ss_pred --------------HHHHhhhc-CCce-EEeeccccchh---------h-------H----hHHHHHHHHHh--cCCCCE
Q 003587 419 --------------VRKICSET-GDEL-HEQHYERFKPL---------V-------V----EAKTLLGDLRN--VRSGDC 460 (809)
Q Consensus 419 --------------i~~l~~~~-~~~~-~~~~~~r~~~l---------~-------~----~~k~ll~~l~~--~~~g~~ 460 (809)
...+.... .... +...+.+..+. . . ....+...+.. ...+.+
T Consensus 268 ~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~ 347 (501)
T PHA02558 268 QYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENT 347 (501)
T ss_pred HHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCE
Confidence 00111100 0000 00000000000 0 0 00112222111 223456
Q ss_pred EEEec-hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEec-cccccccccc-ccEEEEcCCCC
Q 003587 461 VVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS-DAVGMGLNLN-IRRVVFYSLSK 537 (809)
Q Consensus 461 II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVAT-dal~~GIDip-V~~VI~~d~~K 537 (809)
+|+|. .+.++.++..|.+. |.++..+||++++++|..+++.|+ +|+..||||| +++++|+|+| +++||++++
T Consensus 348 lV~~~~~~h~~~L~~~L~~~-g~~v~~i~G~~~~~eR~~i~~~~~--~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p-- 422 (501)
T PHA02558 348 FVMFKYVEHGKPLYEMLKKV-YDKVYYVSGEVDTEDRNEMKKIAE--GGKGIIIVASYGVFSTGISIKNLHHVIFAHP-- 422 (501)
T ss_pred EEEEEEHHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHHHh--CCCCeEEEEEcceeccccccccccEEEEecC--
Confidence 66664 57888899998875 899999999999999999999998 7888999998 8999999998 999999998
Q ss_pred CCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEe
Q 003587 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~ 574 (809)
+.|...|+||+||+||.+...+...++-|+
T Consensus 423 -------~~s~~~~~QriGR~~R~~~~K~~~~i~D~v 452 (501)
T PHA02558 423 -------SKSKIIVLQSIGRVLRKHGSKSIATVWDII 452 (501)
T ss_pred -------CcchhhhhhhhhccccCCCCCceEEEEEee
Confidence 779999999999999998732223444444
No 70
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.1e-25 Score=265.07 Aligned_cols=307 Identities=21% Similarity=0.232 Sum_probs=206.0
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHcCC----cEEEEc-ccHhHHHHHHHHHHh-cCCceeeeecccccccccCcceeee
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFMEAK----KGIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSNHIACT 365 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~~~----~~Lvls-PtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~~~~~i~~t 365 (809)
-+++.++++||||||||++..+.+++.+ ..|+|+ |+|.-|..+++++.+ +|..++-..|..++..... --.+-
T Consensus 63 ~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~-s~~Tr 141 (845)
T COG1643 63 EQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKV-SPRTR 141 (845)
T ss_pred HhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccC-CCCce
Confidence 6788999999999999999877777654 356666 999999999999976 4666665556554432211 00112
Q ss_pred eeecccCCc------------ccEEEEecccccc-cccchhHHHHH-HhhcccccccccCCchH--HHHHHHHhhhc---
Q 003587 366 VEMVSTDEM------------YDVAVIDEIQMMS-DACRGYAWTRA-LLGLMADEIHLCGDPSV--LDVVRKICSET--- 426 (809)
Q Consensus 366 ie~lt~~rl------------v~~vVIDEAH~i~-d~~~g~~~~~i-ll~l~~~~i~l~~s~~~--~~li~~l~~~~--- 426 (809)
+.++|.|-+ |++|||||||+.+ +.++.-.+... +...+.+--.+++++|. .+....+....
T Consensus 142 ik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~ 221 (845)
T COG1643 142 IKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIE 221 (845)
T ss_pred eEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEE
Confidence 333443322 8999999999986 22222222222 22222222223445443 22222221110
Q ss_pred --CCce-EEeeccc-cchhh-HhH--HHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHH-hc--CCeEEEEeCCCCHHH
Q 003587 427 --GDEL-HEQHYER-FKPLV-VEA--KTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEK-HT--NHHCCVIYGALPPET 495 (809)
Q Consensus 427 --~~~~-~~~~~~r-~~~l~-~~~--k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~-~~--g~~v~~lhg~l~~~~ 495 (809)
+... +...|.. ....+ +.. ...+..+.....|+++||++ ..++.+++..|.+ .. ...++++||.|++++
T Consensus 222 i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~e 301 (845)
T COG1643 222 IEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEE 301 (845)
T ss_pred ecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHH
Confidence 1111 1122211 11111 111 24555666778999999997 6899999999987 33 478999999999998
Q ss_pred HHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHHHHcccCCCCCCC
Q 003587 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIY 565 (809)
Q Consensus 496 R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~ 565 (809)
+.++++--. .|+.+|++||++++.+|+|| |++||+.+..| ||.. ...|.|.++..||+|||||.+.
T Consensus 302 Q~rvF~p~~--~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p-- 377 (845)
T COG1643 302 QVRVFEPAP--GGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP-- 377 (845)
T ss_pred HHhhcCCCC--CCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC--
Confidence 877665553 66678999999999999997 99999999876 6654 4789999999999999999998
Q ss_pred CceEEEEEecccHHHHHHHHcCCchHHHHhcCCCcHHHHHHH
Q 003587 566 PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607 (809)
Q Consensus 566 ~~G~~i~~~~~d~~~l~~~l~~~~~~~~~~~~~p~~~~l~~~ 607 (809)
|+||.+|+++... .+...+.|+|.+..+.....+|..+
T Consensus 378 --GicyRLyse~~~~--~~~~~t~PEIlrtdLs~~vL~l~~~ 415 (845)
T COG1643 378 --GICYRLYSEEDFL--AFPEFTLPEILRTDLSGLVLQLKSL 415 (845)
T ss_pred --ceEEEecCHHHHH--hcccCCChhhhhcchHHHHHHHHhc
Confidence 9999999875433 7777788888887765544444443
No 71
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.7e-25 Score=246.54 Aligned_cols=292 Identities=26% Similarity=0.302 Sum_probs=194.7
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHHcCC-----cEEEEc-ccHhHHHHHHHHHHh-cCCceeeeeccccccccc---Cc
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAK-----KGIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPF---SN 360 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~~~~-----~~Lvls-PtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~~---~~ 360 (809)
+-.++.+|++|.||||||++..+.|.++| +-|-|+ |+|..|..++.++++ +|+..+--.|..++-..- ..
T Consensus 277 v~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekT 356 (902)
T KOG0923|consen 277 VKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKT 356 (902)
T ss_pred HHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcce
Confidence 46788999999999999999999988665 336666 999999999999876 455554444444332110 00
Q ss_pred -ceeeee-----eecccCCc--ccEEEEecccccccccchhHHHHHHhhcccc-------cccccCCchHHHHHHHHhhh
Q 003587 361 -HIACTV-----EMVSTDEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMAD-------EIHLCGDPSVLDVVRKICSE 425 (809)
Q Consensus 361 -~i~~ti-----e~lt~~rl--v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~-------~i~l~~s~~~~~li~~l~~~ 425 (809)
.-+.|- |+++...+ ++++||||||... --+.+|.+|-.+ --.++.+++.- .+++...
T Consensus 357 vlKYMTDGmLlREfL~epdLasYSViiiDEAHERT------L~TDILfgLvKDIar~RpdLKllIsSAT~D--AekFS~f 428 (902)
T KOG0923|consen 357 VLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERT------LHTDILFGLVKDIARFRPDLKLLISSATMD--AEKFSAF 428 (902)
T ss_pred eeeeecchhHHHHHhccccccceeEEEeehhhhhh------hhhhHHHHHHHHHHhhCCcceEEeeccccC--HHHHHHh
Confidence 111221 22222222 8999999999975 345555555433 22334444421 1122222
Q ss_pred cCCceEEeeccc---------cch--hhHhH--HHHHHHHHhcCCCCEEEEech-hHHHHHHHHHHH---hc-----CCe
Q 003587 426 TGDELHEQHYER---------FKP--LVVEA--KTLLGDLRNVRSGDCVVAFSR-REIFEVKMAIEK---HT-----NHH 483 (809)
Q Consensus 426 ~~~~~~~~~~~r---------~~~--l~~~~--k~ll~~l~~~~~g~~II~fsr-k~~~~l~~~L~~---~~-----g~~ 483 (809)
..+..+...-.| ..| .+++. ..+++++...+.|++++|++. .+++.....|.. .+ .+-
T Consensus 429 FDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eli 508 (902)
T KOG0923|consen 429 FDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELI 508 (902)
T ss_pred ccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEE
Confidence 222222221111 111 22222 245556666778999999974 556555555543 12 256
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHH
Q 003587 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQ 553 (809)
Q Consensus 484 v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Q 553 (809)
++++|+.||.+.+..+++-- |.|..+|++||++++..|.|| |.+||+-+..| |++. ...|.|.++..|
T Consensus 509 v~PiYaNLPselQakIFePt--P~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~Q 586 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKIFEPT--PPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQ 586 (902)
T ss_pred EeeccccCChHHHHhhcCCC--CCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhh
Confidence 89999999999776665544 689999999999999999997 99999999988 6655 478999999999
Q ss_pred HHcccCCCCCCCCceEEEEEecccHHHHHHHHcCCchHHHHhcC
Q 003587 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597 (809)
Q Consensus 554 r~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~~~~~~~~~~~ 597 (809)
|+|||||.|+ |.|+.+|+.. .+..++=..+.|+|++..+
T Consensus 587 RaGRAGRtgP----GKCfRLYt~~-aY~~eLE~~t~PEIqRtnL 625 (902)
T KOG0923|consen 587 RAGRAGRTGP----GKCFRLYTAW-AYEHELEEMTVPEIQRTNL 625 (902)
T ss_pred hccccCCCCC----CceEEeechh-hhhhhhccCCCcceeeccc
Confidence 9999999998 9999999743 3444444456788887765
No 72
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=8.4e-25 Score=251.53 Aligned_cols=297 Identities=23% Similarity=0.294 Sum_probs=218.8
Q ss_pred hhHHhhCCCeEEEEcCCCChHHHHH--HHHHH--cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcce
Q 003587 287 PFARVMKRKIIYHCGPTNSGKTYNA--LQRFM--EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHI 362 (809)
Q Consensus 287 p~~~~l~grdviv~apTGSGKTl~~--L~~L~--~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i 362 (809)
++.....|..|+|.|+|.+|||++| ..++. ..-++||-+|.++|-+|-+..++..--.++++||+..- .+.+.++
T Consensus 305 Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqi-nPeAsCL 383 (1248)
T KOG0947|consen 305 AIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQI-NPEASCL 383 (1248)
T ss_pred HHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecceee-CCCcceE
Confidence 4445688999999999999999993 33333 44589999999999999999999877788899998654 3556677
Q ss_pred eeeeeeccc--------CCcccEEEEecccccccccchhHHHHHHhhcccccccccCCchHHHHHHHHhhhcCC----ce
Q 003587 363 ACTVEMVST--------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD----EL 430 (809)
Q Consensus 363 ~~tie~lt~--------~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~----~~ 430 (809)
+.|.|++.. -+.+..||+||+|-+.|..+|..|..++..+|.....+|-++++.+-.+ ++.|.+. .+
T Consensus 384 IMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~I 462 (1248)
T KOG0947|consen 384 IMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLE-FADWIGRTKQKTI 462 (1248)
T ss_pred eehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChHH-HHHHhhhccCceE
Confidence 777776532 2338999999999999999999999999988876555555554332221 2222111 11
Q ss_pred EEe-eccccchh--------------------------------------------------------------------
Q 003587 431 HEQ-HYERFKPL-------------------------------------------------------------------- 441 (809)
Q Consensus 431 ~~~-~~~r~~~l-------------------------------------------------------------------- 441 (809)
.+. ...|+.|+
T Consensus 463 yViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~ 542 (1248)
T KOG0947|consen 463 YVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRG 542 (1248)
T ss_pred EEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccc
Confidence 100 00111110
Q ss_pred ----hHhH--HHHHHHHHhcC----CCCEEEEechhHHHHHHHHHHHh--------------------------------
Q 003587 442 ----VVEA--KTLLGDLRNVR----SGDCVVAFSRREIFEVKMAIEKH-------------------------------- 479 (809)
Q Consensus 442 ----~~~~--k~ll~~l~~~~----~g~~II~fsrk~~~~l~~~L~~~-------------------------------- 479 (809)
.... ...+..+.... -.-+++|||++.|++.+..|...
T Consensus 543 ~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQv 622 (1248)
T KOG0947|consen 543 SGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQV 622 (1248)
T ss_pred ccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHH
Confidence 0000 01222221111 12356677999999999998421
Q ss_pred ------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHH
Q 003587 480 ------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQ 553 (809)
Q Consensus 480 ------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Q 553 (809)
.-..++++|||+-|-.++-+.-.|. .|-++||+||..++||+|.|.++||+..+.|+||...+-+.+-+|+|
T Consensus 623 l~m~~ll~RGiaVHH~GlLPivKE~VE~LFq--rGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQ 700 (1248)
T KOG0947|consen 623 LSMRSLLLRGIAVHHGGLLPIVKEVVELLFQ--RGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQ 700 (1248)
T ss_pred HHHHHHHhhcchhhcccchHHHHHHHHHHHh--cCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHh
Confidence 1246889999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCCCCCceEEEEEec---ccHHHHHHHHcCC
Q 003587 554 IAGRAGRRGSIYPDGLTTTLNL---DDLDYLIECLKQP 588 (809)
Q Consensus 554 r~GRAGR~G~~~~~G~~i~~~~---~d~~~l~~~l~~~ 588 (809)
++|||||.|- +..|+++.+.. ++...+++++-..
T Consensus 701 MAGRAGRRGl-D~tGTVii~~~~~vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 701 MAGRAGRRGL-DETGTVIIMCKDSVPSAATLKRLIMGG 737 (1248)
T ss_pred hhcccccccc-CcCceEEEEecCCCCCHHHHhhHhcCC
Confidence 9999999997 67999999985 5667777776553
No 73
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.6e-25 Score=249.36 Aligned_cols=297 Identities=22% Similarity=0.279 Sum_probs=202.2
Q ss_pred hhcCCChhhhhh--hhhhhHhhhhccCcHHHHHHHHHHHhCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHHHHHHHH
Q 003587 239 VWLGPSDDAVKF--LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFM 316 (809)
Q Consensus 239 ~~~~~~~~~~~~--llp~f~~~~~~~f~~~l~~i~~~l~~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~~L~~L~ 316 (809)
+.+.+..+++.. -+|+|. +.++|+++| ..+-.||+||.||||||++..+.|.
T Consensus 240 V~V~R~~EIQ~sR~~LPI~a---------eEq~IMEaI-----------------n~n~vvIIcGeTGsGKTTQvPQFLY 293 (1172)
T KOG0926|consen 240 VIVSRPAEIQESRLDLPIVA---------EEQRIMEAI-----------------NENPVVIICGETGSGKTTQVPQFLY 293 (1172)
T ss_pred EEecCcHHHHHHHhcCchhH---------HHHHHHHHh-----------------hcCCeEEEecCCCCCccccchHHHH
Confidence 334444444443 568877 556777766 6677899999999999999888888
Q ss_pred cCC---------cEEEEc-ccHhHHHHHHHHHHhc-CCceeeeecccccccccCccee--eeeeecccCCc---------
Q 003587 317 EAK---------KGIYCS-PLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLVPFSNHIA--CTVEMVSTDEM--------- 374 (809)
Q Consensus 317 ~~~---------~~Lvls-PtR~La~Q~~~~l~~~-g~~~~l~~g~~~~~~~~~~~i~--~tie~lt~~rl--------- 374 (809)
++| ..|-|+ |+|..|..+++++... |. .+--.|.+++ +...+. +.+..+|.|-+
T Consensus 294 EAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIR---fd~ti~e~T~IkFMTDGVLLrEi~~Dfl 369 (1172)
T KOG0926|consen 294 EAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIR---FDGTIGEDTSIKFMTDGVLLREIENDFL 369 (1172)
T ss_pred HcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEEE---eccccCCCceeEEecchHHHHHHHHhHh
Confidence 654 356666 9999999999988642 32 2111122221 111111 12334444422
Q ss_pred ---ccEEEEecccccccccchhHHHHHHhhcccccccc-----------------cCCch--HHHHHH-HHhhhcCCc--
Q 003587 375 ---YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHL-----------------CGDPS--VLDVVR-KICSETGDE-- 429 (809)
Q Consensus 375 ---v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l-----------------~~s~~--~~~li~-~l~~~~~~~-- 429 (809)
+++|||||||..+ ..+.+|.|+....+.+ +++++ +.+..+ +.+-.....
T Consensus 370 L~kYSvIIlDEAHERS------vnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPli 443 (1172)
T KOG0926|consen 370 LTKYSVIILDEAHERS------VNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLI 443 (1172)
T ss_pred hhhceeEEechhhhcc------chHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCcee
Confidence 8999999999987 5677777775542221 12222 111110 000000111
Q ss_pred -------eEEeeccccch-hhHhH--HHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHHh-------------------
Q 003587 430 -------LHEQHYERFKP-LVVEA--KTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH------------------- 479 (809)
Q Consensus 430 -------~~~~~~~r~~~-l~~~~--k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~------------------- 479 (809)
.+..+|.+.++ .++.. +..+.++.++++|.++||.| ++++.++...|++.
T Consensus 444 kVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e 523 (1172)
T KOG0926|consen 444 KVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKE 523 (1172)
T ss_pred eeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccc
Confidence 11224444333 33332 47788899999999999997 58888888888542
Q ss_pred -------------------------------------------------------------------------------c
Q 003587 480 -------------------------------------------------------------------------------T 480 (809)
Q Consensus 480 -------------------------------------------------------------------------------~ 480 (809)
.
T Consensus 524 ~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~ 603 (1172)
T KOG0926|consen 524 LKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPG 603 (1172)
T ss_pred cccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCC
Confidence 1
Q ss_pred CCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhH
Q 003587 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQ 550 (809)
Q Consensus 481 g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~ 550 (809)
...|.++|+-|+.+.+.+++..- |.|..-++|||++++..|+|| |+|||+.+..| ||.. .+.+.|.++
T Consensus 604 pLyvLPLYSLLs~~~Q~RVF~~~--p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkAS 681 (1172)
T KOG0926|consen 604 PLYVLPLYSLLSTEKQMRVFDEV--PKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKAS 681 (1172)
T ss_pred ceEEeehhhhcCHHHhhhhccCC--CCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccc
Confidence 25689999999999776666555 589999999999999999999 99999999876 7654 578999999
Q ss_pred HHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 551 VKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 551 y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
.-||+|||||.|. |+||.||+..
T Consensus 682 adQRAGRAGRtgp----GHcYRLYSSA 704 (1172)
T KOG0926|consen 682 ADQRAGRAGRTGP----GHCYRLYSSA 704 (1172)
T ss_pred cchhccccCCCCC----CceeehhhhH
Confidence 9999999999998 9999999753
No 74
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=4.8e-24 Score=254.72 Aligned_cols=289 Identities=21% Similarity=0.275 Sum_probs=206.7
Q ss_pred hhhhccCcHHHHHHHHHHHhCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHHHH----HHHHcCCcEEEEcccHhHHH
Q 003587 257 EFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAM 332 (809)
Q Consensus 257 ~~~~~~f~~~l~~i~~~l~~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~~L----~~L~~~~~~LvlsPtR~La~ 332 (809)
.|+..+.++++..|.+.. .|+.+|.|+ |-++||.-|.|||.+|+ .++..++++.|++||..||+
T Consensus 590 ~FPyeET~DQl~AI~eVk--~DM~~~kpM----------DRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~ 657 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVK--RDMESGKPM----------DRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQ 657 (1139)
T ss_pred cCCCcCCHHHHHHHHHHH--HHhccCCcc----------hheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHH
Confidence 455666788888777665 345555443 77999999999999854 55667889999999999999
Q ss_pred HHHHHHHhc----CCceeeeecc----cccc------cccCcceeeeeeecccCC---cccEEEEecccccccccchhHH
Q 003587 333 EVFDKVNAL----GVYCSLLTGQ----EKKL------VPFSNHIACTVEMVSTDE---MYDVAVIDEIQMMSDACRGYAW 395 (809)
Q Consensus 333 Q~~~~l~~~----g~~~~l~~g~----~~~~------~~~~~~i~~tie~lt~~r---lv~~vVIDEAH~i~d~~~g~~~ 395 (809)
|.++.+++. .+.+.++..- +... ...-..++.|..++...- .+.++||||-|+ ||..-
T Consensus 658 QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqR-----FGVk~ 732 (1139)
T COG1197 658 QHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQR-----FGVKH 732 (1139)
T ss_pred HHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhh-----cCccH
Confidence 999988874 3444433321 1111 012334556666665442 289999999999 66666
Q ss_pred HHHHhhccccc--ccccCCchHH---------HHHHHHhhhcCCceEEeeccccchhhHhHHHHHHHHHhcCCCCEEEEe
Q 003587 396 TRALLGLMADE--IHLCGDPSVL---------DVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF 464 (809)
Q Consensus 396 ~~ill~l~~~~--i~l~~s~~~~---------~li~~l~~~~~~~~~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~f 464 (809)
...+..+.+.. .+++++|-.. +...-+.....+..-++.|.......+-...++..+ ...|++.+++
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl--~RgGQvfYv~ 810 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL--LRGGQVFYVH 810 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH--hcCCEEEEEe
Confidence 66676666542 3444444221 112223334444555566654443333344554444 3456666666
Q ss_pred ch-hHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCC
Q 003587 465 SR-REIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGD 541 (809)
Q Consensus 465 sr-k~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~ 541 (809)
++ ..+++++..|++. +..++++.||.|+..+-+.++..|. +|+++|||||.+++.||||| ++.+|..+..+|
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~--~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f--- 885 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY--NGEYDVLVCTTIIETGIDIPNANTIIIERADKF--- 885 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH--cCCCCEEEEeeeeecCcCCCCCceEEEeccccc---
Confidence 76 7889999999873 4578999999999999999999999 89999999999999999998 999998887665
Q ss_pred CcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 542 KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 542 ~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
..++.+|..||+||... .|+||.+|+++
T Consensus 886 -----GLsQLyQLRGRVGRS~~---~AYAYfl~p~~ 913 (1139)
T COG1197 886 -----GLAQLYQLRGRVGRSNK---QAYAYFLYPPQ 913 (1139)
T ss_pred -----cHHHHHHhccccCCccc---eEEEEEeecCc
Confidence 89999999999999998 89999999764
No 75
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.3e-25 Score=252.58 Aligned_cols=305 Identities=22% Similarity=0.316 Sum_probs=222.0
Q ss_pred CCccchhHHhhCCCeEEEEcCCCChHHHHH----HHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccc
Q 003587 282 PHTWFPFARVMKRKIIYHCGPTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357 (809)
Q Consensus 282 Pt~~~p~~~~l~grdviv~apTGSGKTl~~----L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~ 357 (809)
|.|..++..+-.+..|++.|.|.+|||.++ .+.|....++||-+|.++|-.|-|..|...-..+++.||+..- .+
T Consensus 132 pFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTI-nP 210 (1041)
T KOG0948|consen 132 PFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTI-NP 210 (1041)
T ss_pred chHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceee-CC
Confidence 334456666788999999999999999983 3445567799999999999999999999988899999998664 35
Q ss_pred cCcceeeeeeeccc----C----CcccEEEEecccccccccchhHHHHHHhhcccccccccCCch---HHHHHHHHhhhc
Q 003587 358 FSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS---VLDVVRKICSET 426 (809)
Q Consensus 358 ~~~~i~~tie~lt~----~----rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~---~~~li~~l~~~~ 426 (809)
.+.+++.|.|++.. + +-+..||+||+|-|-|..+|..|...+..++...-.++-+++ .....+.++.-.
T Consensus 211 ~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ih 290 (1041)
T KOG0948|consen 211 DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIH 290 (1041)
T ss_pred CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHh
Confidence 56777778776533 2 228999999999999999999999888877765433333333 333344443322
Q ss_pred CC--ceEEeeccccchh--------------hHh---------HH-----------------------------------
Q 003587 427 GD--ELHEQHYERFKPL--------------VVE---------AK----------------------------------- 446 (809)
Q Consensus 427 ~~--~~~~~~~~r~~~l--------------~~~---------~k----------------------------------- 446 (809)
.. .++...| |++|+ .++ ..
T Consensus 291 kQPcHVVYTdy-RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s 369 (1041)
T KOG0948|consen 291 KQPCHVVYTDY-RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDS 369 (1041)
T ss_pred cCCceEEeecC-CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcc
Confidence 11 1111111 11110 000 00
Q ss_pred ---HHHHHHHh-cCCCCEEEEechhHHHHHHHHHHHh--------------------------------------cCCeE
Q 003587 447 ---TLLGDLRN-VRSGDCVVAFSRREIFEVKMAIEKH--------------------------------------TNHHC 484 (809)
Q Consensus 447 ---~ll~~l~~-~~~g~~II~fsrk~~~~l~~~L~~~--------------------------------------~g~~v 484 (809)
.++..+.. ....-+|+.|++++|+.+|-.+.+. +...+
T Consensus 370 ~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGI 449 (1041)
T KOG0948|consen 370 DIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGI 449 (1041)
T ss_pred cHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcc
Confidence 11111111 1112234445899999999887431 22468
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCC
Q 003587 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564 (809)
Q Consensus 485 ~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~ 564 (809)
.++||||-|--++-+.-.|. .|-++||.||..+++|+|.|.+.|++....||||...++.|.-+|+|++|||||.|.
T Consensus 450 GIHHsGLLPIlKE~IEILFq--EGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~- 526 (1041)
T KOG0948|consen 450 GIHHSGLLPILKEVIEILFQ--EGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGI- 526 (1041)
T ss_pred ccccccchHHHHHHHHHHHh--ccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCC-
Confidence 89999999999999999998 899999999999999999999999999999999999999999999999999999997
Q ss_pred CCceEEEEEecccH--HHHHHHHcCCchH
Q 003587 565 YPDGLTTTLNLDDL--DYLIECLKQPFEV 591 (809)
Q Consensus 565 ~~~G~~i~~~~~d~--~~l~~~l~~~~~~ 591 (809)
...|.||.++++.. ...+.++....++
T Consensus 527 DdrGivIlmiDekm~~~~ak~m~kG~aD~ 555 (1041)
T KOG0948|consen 527 DDRGIVILMIDEKMEPQVAKDMLKGSADP 555 (1041)
T ss_pred CCCceEEEEecCcCCHHHHHHHhcCCCcc
Confidence 57899999997643 3344566554443
No 76
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=7.4e-24 Score=246.59 Aligned_cols=296 Identities=24% Similarity=0.320 Sum_probs=201.7
Q ss_pred chhHHhhCCCeEEEEcCCCChHHHHHHHHHH----c----------CCcEEEEcccHhHHHHHHHHHHh----cCCceee
Q 003587 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFM----E----------AKKGIYCSPLRLLAMEVFDKVNA----LGVYCSL 347 (809)
Q Consensus 286 ~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~----------~~~~LvlsPtR~La~Q~~~~l~~----~g~~~~l 347 (809)
+|.+ --.+.++|+|||||||||-.|+..++ + +-++|||+|+++||.++++.+.+ +|+.|.-
T Consensus 119 Fp~a-Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~E 197 (1230)
T KOG0952|consen 119 FPVA-YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRE 197 (1230)
T ss_pred hhhh-hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEE
Confidence 5553 35678999999999999988666554 1 23789999999999999988876 4788888
Q ss_pred eeccccc---ccccCcceeeeeeec---ccCC--------cccEEEEecccccccccchhHHHHHHhhcc------cccc
Q 003587 348 LTGQEKK---LVPFSNHIACTVEMV---STDE--------MYDVAVIDEIQMMSDACRGYAWTRALLGLM------ADEI 407 (809)
Q Consensus 348 ~~g~~~~---~~~~~~~i~~tie~l---t~~r--------lv~~vVIDEAH~i~d~~~g~~~~~ill~l~------~~~i 407 (809)
+||+..- .+.....+++|||.. |... .+.+|||||+|++.|. +|+.+..++..+. ..-|
T Consensus 198 LTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~I 276 (1230)
T KOG0952|consen 198 LTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMI 276 (1230)
T ss_pred ecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhhe
Confidence 8887542 223344566666543 2221 2899999999999885 9999887764433 2234
Q ss_pred cccCCchHHHHHHHHhhhcCCc----e--EEeeccccchh-----------------hHhHHHHHHHHHhcCCCCEEEEe
Q 003587 408 HLCGDPSVLDVVRKICSETGDE----L--HEQHYERFKPL-----------------VVEAKTLLGDLRNVRSGDCVVAF 464 (809)
Q Consensus 408 ~l~~s~~~~~li~~l~~~~~~~----~--~~~~~~r~~~l-----------------~~~~k~ll~~l~~~~~g~~II~f 464 (809)
++++-...++....++.+.... + +.+.| |+.|+ ....-...+.+..+..|..++||
T Consensus 277 RivgLSATlPN~eDvA~fL~vn~~~glfsFd~~y-RPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvF 355 (1230)
T KOG0952|consen 277 RIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRY-RPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVF 355 (1230)
T ss_pred EEEEeeccCCCHHHHHHHhcCCCccceeeecccc-cccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEE
Confidence 4444222222222333333221 1 11111 11111 01111111222334456555555
Q ss_pred --chhHHHHHHHHHHHh----------------------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccc
Q 003587 465 --SRREIFEVKMAIEKH----------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520 (809)
Q Consensus 465 --srk~~~~l~~~L~~~----------------------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~ 520 (809)
+|+++.+.|+.|.+. ......++|+||.-.+|..+.+.|. .|.++|||||..++
T Consensus 356 vhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~--~G~i~vL~cTaTLA 433 (1230)
T KOG0952|consen 356 VHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK--EGHIKVLCCTATLA 433 (1230)
T ss_pred EecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh--cCCceEEEecceee
Confidence 788888888888642 1145788999999999999999999 89999999999999
Q ss_pred ccccccccEEEEcCCCCCCCCC--cccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHH-HHHHHcC
Q 003587 521 MGLNLNIRRVVFYSLSKYNGDK--IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY-LIECLKQ 587 (809)
Q Consensus 521 ~GIDipV~~VI~~d~~K~dg~~--~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~-l~~~l~~ 587 (809)
.|+|+|..+||..+..-||... ..-.++-+.+|+.|||||.+- ...|..+.+-+.|.-. ...+|.+
T Consensus 434 wGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqF-d~~G~giIiTt~dkl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 434 WGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQF-DSSGEGIIITTRDKLDHYESLLTG 502 (1230)
T ss_pred eccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCC-CCCceEEEEecccHHHHHHHHHcC
Confidence 9999999999999998888774 666789999999999999875 3468888888766543 4445544
No 77
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.5e-23 Score=248.64 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=99.1
Q ss_pred HHHHHHHhc--CCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRNV--RSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~~--~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.++..+... ....++||+ +.+.++.++..|.+. |+.+..+||.+.+.++..+...+. .| .|+||||++|||+
T Consensus 416 al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~-gi~~~~L~~~~~~~e~~~i~~ag~--~g--~VlIATdmAgRG~ 490 (790)
T PRK09200 416 AVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA-GIPHNLLNAKNAAKEAQIIAEAGQ--KG--AVTVATNMAGRGT 490 (790)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCCEEEecCCccHHHHHHHHHcCC--CC--eEEEEccchhcCc
Confidence 444555432 333455555 468899999999885 999999999999998888887776 45 7999999999999
Q ss_pred cc---c-cc-----EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 524 NL---N-IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 524 Di---p-V~-----~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
|| | |. +||++++ |.+...|.||+|||||.|. .|.+++|++.++.-+..
T Consensus 491 DI~l~~~V~~~GGL~VI~~d~---------p~s~r~y~qr~GRtGR~G~---~G~s~~~is~eD~l~~~ 547 (790)
T PRK09200 491 DIKLGEGVHELGGLAVIGTER---------MESRRVDLQLRGRSGRQGD---PGSSQFFISLEDDLLKR 547 (790)
T ss_pred CCCcccccccccCcEEEeccC---------CCCHHHHHHhhccccCCCC---CeeEEEEEcchHHHHHh
Confidence 99 6 88 9999999 9999999999999999999 89999999876655543
No 78
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.7e-24 Score=258.61 Aligned_cols=286 Identities=24% Similarity=0.307 Sum_probs=205.1
Q ss_pred chhHHhhCCCeEEEEcCCCChHHHHH----HHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCce----eeeecccccccc
Q 003587 286 FPFARVMKRKIIYHCGPTNSGKTYNA----LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC----SLLTGQEKKLVP 357 (809)
Q Consensus 286 ~p~~~~l~grdviv~apTGSGKTl~~----L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~----~l~~g~~~~~~~ 357 (809)
.+++.+..|..|+++||||||||.++ -.++..+.+++|.+|.++|..|.+..+...-..+ +++||+.... +
T Consensus 126 ~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-~ 204 (1041)
T COG4581 126 EAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSIN-P 204 (1041)
T ss_pred HHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeC-C
Confidence 45556789999999999999999982 3455677789999999999999999998754444 8999987653 4
Q ss_pred cCcceeeeeeeccc----C----CcccEEEEecccccccccchhHHHHHHhhcccccccccCCch---HHHHHHHHhhhc
Q 003587 358 FSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS---VLDVVRKICSET 426 (809)
Q Consensus 358 ~~~~i~~tie~lt~----~----rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~---~~~li~~l~~~~ 426 (809)
.+++++.|.|++.. + +.+..||+||+|.|.|..+|..|...++.++.....+..+++ .......+....
T Consensus 205 ~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 205 DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVH 284 (1041)
T ss_pred CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhcc
Confidence 46666666665422 1 228999999999999999999999999999875333333333 222222222111
Q ss_pred C-CceEEeeccccchh-------------hHhH-----------------------------------------------
Q 003587 427 G-DELHEQHYERFKPL-------------VVEA----------------------------------------------- 445 (809)
Q Consensus 427 ~-~~~~~~~~~r~~~l-------------~~~~----------------------------------------------- 445 (809)
. +..++..-.|+.|+ ..+.
T Consensus 285 ~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (1041)
T COG4581 285 SQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGP 364 (1041)
T ss_pred CCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCccccc
Confidence 1 11111111111110 0000
Q ss_pred ---HHHHHHHHhc-CCCCEEEEechhHHHHHHHHHHHh----------------------------------------cC
Q 003587 446 ---KTLLGDLRNV-RSGDCVVAFSRREIFEVKMAIEKH----------------------------------------TN 481 (809)
Q Consensus 446 ---k~ll~~l~~~-~~g~~II~fsrk~~~~l~~~L~~~----------------------------------------~g 481 (809)
..++..+... ....++++|+++.|+..+..+... +.
T Consensus 365 ~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~ 444 (1041)
T COG4581 365 AGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLL 444 (1041)
T ss_pred ccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHh
Confidence 0111222111 122355666899988877776310 11
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCC
Q 003587 482 HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561 (809)
Q Consensus 482 ~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~ 561 (809)
..++++|+||-|..|..+...|. .|-++|++||.++++|||.|++.|+++.+.||||...++.+..+|.|++|||||.
T Consensus 445 RGiavHH~GlLP~~K~~vE~Lfq--~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRR 522 (1041)
T COG4581 445 RGIAVHHAGLLPAIKELVEELFQ--EGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRR 522 (1041)
T ss_pred hhhhhhccccchHHHHHHHHHHh--ccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccc
Confidence 23568999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEec
Q 003587 562 GSIYPDGLTTTLNL 575 (809)
Q Consensus 562 G~~~~~G~~i~~~~ 575 (809)
|- ...|.+++...
T Consensus 523 Gl-D~~G~vI~~~~ 535 (1041)
T COG4581 523 GL-DVLGTVIVIEP 535 (1041)
T ss_pred cc-cccceEEEecC
Confidence 97 56899999854
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.91 E-value=1.7e-23 Score=232.82 Aligned_cols=250 Identities=17% Similarity=0.249 Sum_probs=148.7
Q ss_pred HHhhCCC--eEEEEcCCCChHHHHHHHHHH-cCCcEEEEcccHhHHHHHHHHHHhc--------CCceeeeecccccc--
Q 003587 289 ARVMKRK--IIYHCGPTNSGKTYNALQRFM-EAKKGIYCSPLRLLAMEVFDKVNAL--------GVYCSLLTGQEKKL-- 355 (809)
Q Consensus 289 ~~~l~gr--dviv~apTGSGKTl~~L~~L~-~~~~~LvlsPtR~La~Q~~~~l~~~--------g~~~~l~~g~~~~~-- 355 (809)
..+.+++ .++++||||||||.+++.+++ ...+++|++|+++|+.|+++++..+ +..+..++|.....
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 86 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIK 86 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHH
Confidence 3356665 378899999999999766654 4558999999999999999998875 22233445541110
Q ss_pred ------------c-----------ccCcceeee-eeecc---------cC-------CcccEEEEecccccccccch---
Q 003587 356 ------------V-----------PFSNHIACT-VEMVS---------TD-------EMYDVAVIDEIQMMSDACRG--- 392 (809)
Q Consensus 356 ------------~-----------~~~~~i~~t-ie~lt---------~~-------rlv~~vVIDEAH~i~d~~~g--- 392 (809)
. ...+.+.+| ++++. +. ..++++||||+|++...+..
T Consensus 87 ~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~ 166 (357)
T TIGR03158 87 EYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGML 166 (357)
T ss_pred HhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhh
Confidence 0 113444444 44432 11 23899999999998743211
Q ss_pred --hHHHHHHhhc--ccccccccCCchHHHHHHHHhhh--cCCc-------------------------------eEEeec
Q 003587 393 --YAWTRALLGL--MADEIHLCGDPSVLDVVRKICSE--TGDE-------------------------------LHEQHY 435 (809)
Q Consensus 393 --~~~~~ill~l--~~~~i~l~~s~~~~~li~~l~~~--~~~~-------------------------------~~~~~~ 435 (809)
.....++... ....+.+.+++. ..+...+... .+.+ .+.+.+
T Consensus 167 ~~l~~~~~~~~~~~~~~~i~lSAT~~-~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 245 (357)
T TIGR03158 167 FLLAYMQLIRFFECRRKFVFLSATPD-PALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELEL 245 (357)
T ss_pred hhhHHHHHHHhhhcCCcEEEEecCCC-HHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEE
Confidence 1111222111 122222233332 1112222111 1111 111111
Q ss_pred cccchhhHh--HHHHHH----HHHhcCCCCEEEEe-chhHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHHHHHhhcCC
Q 003587 436 ERFKPLVVE--AKTLLG----DLRNVRSGDCVVAF-SRREIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQANLFNDQD 507 (809)
Q Consensus 436 ~r~~~l~~~--~k~ll~----~l~~~~~g~~II~f-srk~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~~~~F~~~~ 507 (809)
.. .+.... .+.+.+ .+.....++++||+ +.+.++.++..|.+. .+..+..+||.+++.+|.+.
T Consensus 246 ~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~-------- 316 (357)
T TIGR03158 246 IP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA-------- 316 (357)
T ss_pred Ee-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh--------
Confidence 10 110000 111222 22223445677777 568999999999864 24678999999999988643
Q ss_pred CCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccC
Q 003587 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559 (809)
Q Consensus 508 g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAG 559 (809)
++.+|||||++++||||+|...||+ + |.+.++|+||+||+|
T Consensus 317 ~~~~iLVaTdv~~rGiDi~~~~vi~-~----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 MQFDILLGTSTVDVGVDFKRDWLIF-S----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred ccCCEEEEecHHhcccCCCCceEEE-C----------CCCHHHHhhhcccCC
Confidence 4678999999999999998557774 4 678999999999998
No 80
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=6.2e-23 Score=225.46 Aligned_cols=113 Identities=22% Similarity=0.352 Sum_probs=93.4
Q ss_pred CCCCEEEEec--hhHHHHHHHHHHHhcCCeEE-EEe--------CCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccc
Q 003587 456 RSGDCVVAFS--RREIFEVKMAIEKHTNHHCC-VIY--------GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524 (809)
Q Consensus 456 ~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~-~lh--------g~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GID 524 (809)
.++..+|+|+ |..++.+...|.+. +..+. .+- .||+|.++.++++.|+ +|+++|||||++++.|||
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~-~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr--~Ge~nVLVaTSVgEEGLD 440 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKI-GIKARVRFIGQASREGDKGMSQKEQKEIIDQFR--KGEYNVLVATSVGEEGLD 440 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhc-CCcceeEEeeccccccccccCHHHHHHHHHHHh--cCCceEEEEcccccccCC
Confidence 4456677775 68899999999875 65554 443 3799999999999999 899999999999999999
Q ss_pred cc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc---cHHHHHHH
Q 003587 525 LN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD---DLDYLIEC 584 (809)
Q Consensus 525 ip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~---d~~~l~~~ 584 (809)
|| |+.||+|++ -.|.--++||.|||||... |.++.|++. |..+....
T Consensus 441 Ip~vDlVifYEp---------vpSeIR~IQR~GRTGR~r~----Grv~vLvt~gtrdeayy~~s 491 (542)
T COG1111 441 IPEVDLVIFYEP---------VPSEIRSIQRKGRTGRKRK----GRVVVLVTEGTRDEAYYYSS 491 (542)
T ss_pred CCcccEEEEecC---------CcHHHHHHHhhCccccCCC----CeEEEEEecCchHHHHHHHH
Confidence 99 999999998 4588899999999999855 999999864 44444433
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=8.6e-23 Score=237.66 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=94.7
Q ss_pred HHHHHHHhcC--CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRNVR--SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~~~--~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.+...+.... ...++||+ +.+.++.++..|.+. |+.+.++||.+++.++ .+..|. .+...|+||||++|||+
T Consensus 461 aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~-gi~~~~Lhg~~~~rE~--~ii~~a--g~~g~VlVATdmAgRGt 535 (656)
T PRK12898 461 AVAARVRELHAQGRPVLVGTRSVAASERLSALLREA-GLPHQVLNAKQDAEEA--AIVARA--GQRGRITVATNMAGRGT 535 (656)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCCEEEeeCCcHHHHH--HHHHHc--CCCCcEEEEccchhccc
Confidence 4444444322 33455555 468899999999885 9999999999765544 455554 34557999999999999
Q ss_pred ccc----cc-----EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHH
Q 003587 524 NLN----IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (809)
Q Consensus 524 Dip----V~-----~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l 585 (809)
||+ |+ +||++++ |.|...|.||+|||||.|. .|.+++|++.++.-+..+.
T Consensus 536 DI~l~~~V~~~GGLhVI~~d~---------P~s~r~y~hr~GRTGRqG~---~G~s~~~is~eD~l~~~~~ 594 (656)
T PRK12898 536 DIKLEPGVAARGGLHVILTER---------HDSARIDRQLAGRCGRQGD---PGSYEAILSLEDDLLQSFL 594 (656)
T ss_pred CcCCccchhhcCCCEEEEcCC---------CCCHHHHHHhcccccCCCC---CeEEEEEechhHHHHHhhh
Confidence 996 44 9999999 9999999999999999999 8999999987766665543
No 82
>PRK13766 Hef nuclease; Provisional
Probab=99.90 E-value=3.6e-23 Score=252.62 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=90.9
Q ss_pred CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCC--------CCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-
Q 003587 457 SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGA--------LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN- 526 (809)
Q Consensus 457 ~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~--------l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip- 526 (809)
.+++|||+ ++..+..++..|.. .|+.+..+||. |++.+|..+++.|+ +|+.+|||||+++++|+|+|
T Consensus 365 ~~kvlIF~~~~~t~~~L~~~L~~-~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~--~g~~~vLvaT~~~~eGldi~~ 441 (773)
T PRK13766 365 DSRIIVFTQYRDTAEKIVDLLEK-EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFR--AGEFNVLVSTSVAEEGLDIPS 441 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHh-CCCceEEEEccccccccCCCCHHHHHHHHHHHH--cCCCCEEEECChhhcCCCccc
Confidence 34445555 35788899999876 48899999986 99999999999999 79999999999999999998
Q ss_pred ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 527 V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+++||+||+ |.+...|+||+||+||.|. |.++.|+..
T Consensus 442 ~~~VI~yd~---------~~s~~r~iQR~GR~gR~~~----~~v~~l~~~ 478 (773)
T PRK13766 442 VDLVIFYEP---------VPSEIRSIQRKGRTGRQEE----GRVVVLIAK 478 (773)
T ss_pred CCEEEEeCC---------CCCHHHHHHHhcccCcCCC----CEEEEEEeC
Confidence 999999999 8899999999999999987 888888853
No 83
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.2e-22 Score=239.05 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=166.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHH-cCCcEEEEcccHhHHHHHHHHHHhcC----Cceeeeecccccccc-cCcceeeeeee
Q 003587 295 KIIYHCGPTNSGKTYNALQRFM-EAKKGIYCSPLRLLAMEVFDKVNALG----VYCSLLTGQEKKLVP-FSNHIACTVEM 368 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~-~~~~~LvlsPtR~La~Q~~~~l~~~g----~~~~l~~g~~~~~~~-~~~~i~~tie~ 368 (809)
+..++++|||+|||++++..+. ..+++|||+|+.+|+.|+.+++.++. ..+..++|....... ....+++|..+
T Consensus 274 r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~ 353 (732)
T TIGR00603 274 RSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKERFHGEAGVVVSTYSM 353 (732)
T ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccccccCCcEEEEEHHH
Confidence 4788999999999999665554 34679999999999999999999863 234555665433211 24456677766
Q ss_pred cccC----------------CcccEEEEecccccccccchhHHHHHHhhcccc-cccccCCchHHHH-HHHHhhhcCCce
Q 003587 369 VSTD----------------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLDV-VRKICSETGDEL 430 (809)
Q Consensus 369 lt~~----------------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~-~i~l~~s~~~~~l-i~~l~~~~~~~~ 430 (809)
++.. +.++++|+||||++.. ..++.++..+.+. ++-|+++|...+- ...+....+..+
T Consensus 354 l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~v 429 (732)
T TIGR00603 354 VAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKL 429 (732)
T ss_pred hhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCee
Confidence 5421 2278999999999964 4566666554443 4445555531110 000100011110
Q ss_pred -----------------E-Eeeccccch----------------hhHh--HH-HHHHHH-Hhc-CCCCEEEEech--hHH
Q 003587 431 -----------------H-EQHYERFKP----------------LVVE--AK-TLLGDL-RNV-RSGDCVVAFSR--REI 469 (809)
Q Consensus 431 -----------------~-~~~~~r~~~----------------l~~~--~k-~ll~~l-~~~-~~g~~II~fsr--k~~ 469 (809)
. ........+ +... .+ ..+..+ ..+ ..++.+|+|+. ..+
T Consensus 430 ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l 509 (732)
T TIGR00603 430 YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFAL 509 (732)
T ss_pred eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHH
Confidence 0 000000000 0000 00 111222 222 25555555543 455
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCccc-CC
Q 003587 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIP-VP 547 (809)
Q Consensus 470 ~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P-~s 547 (809)
..++..| + +..+||++++.+|.++++.|+. .+.+++||+|+++++|||+| +++||+++. | .|
T Consensus 510 ~~~a~~L----~--~~~I~G~ts~~ER~~il~~Fr~-~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~---------~~gS 573 (732)
T TIGR00603 510 KEYAIKL----G--KPFIYGPTSQQERMQILQNFQH-NPKVNTIFLSKVGDTSIDLPEANVLIQISS---------HYGS 573 (732)
T ss_pred HHHHHHc----C--CceEECCCCHHHHHHHHHHHHh-CCCccEEEEecccccccCCCCCCEEEEeCC---------CCCC
Confidence 5555544 3 5678999999999999999982 35889999999999999999 999999987 5 59
Q ss_pred HhHHHHHHcccCCCCCCCC----ceEEEEEecccH
Q 003587 548 GSQVKQIAGRAGRRGSIYP----DGLTTTLNLDDL 578 (809)
Q Consensus 548 ~~~y~Qr~GRAGR~G~~~~----~G~~i~~~~~d~ 578 (809)
..+|+||+||++|.+.... ....|.|++.+.
T Consensus 574 ~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 574 RRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred HHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 9999999999999987211 133488887653
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=246.14 Aligned_cols=288 Identities=20% Similarity=0.253 Sum_probs=194.1
Q ss_pred HHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH----cCC--cEEEEcccHhHHHHHHHHHHhc-
Q 003587 271 RAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAK--KGIYCSPLRLLAMEVFDKVNAL- 341 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~~~--~~LvlsPtR~La~Q~~~~l~~~- 341 (809)
..++.+.|..++.. ..++..+.+|+++|++.|||||||.+|+.+++ +++ ++|||.||++||++|.++++++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 35566677776655 55666689999999999999999999888776 333 5699999999999999999886
Q ss_pred ---C--Cceeeeecccccccc-----cCccee-eeeeecccCC------------cccEEEEecccccccccchhHHHHH
Q 003587 342 ---G--VYCSLLTGQEKKLVP-----FSNHIA-CTVEMVSTDE------------MYDVAVIDEIQMMSDACRGYAWTRA 398 (809)
Q Consensus 342 ---g--~~~~l~~g~~~~~~~-----~~~~i~-~tie~lt~~r------------lv~~vVIDEAH~i~d~~~g~~~~~i 398 (809)
+ +.+..++|+...... ..++|. +++.|+.-.- .+.+||+||+|-.--. ||..+.-.
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-chhHHHHH
Confidence 3 566778887655332 344444 4577664411 1899999999998532 56664433
Q ss_pred Hhhc-------ccccccccCCchHHHHHHHHhhhcCCceEE-----------eeccccch------------hhHhHHHH
Q 003587 399 LLGL-------MADEIHLCGDPSVLDVVRKICSETGDELHE-----------QHYERFKP------------LVVEAKTL 448 (809)
Q Consensus 399 ll~l-------~~~~i~l~~s~~~~~li~~l~~~~~~~~~~-----------~~~~r~~~------------l~~~~k~l 448 (809)
+..| ....+.++.++|.-...+......+..... ..+....| .......+
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~ 298 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATL 298 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHH
Confidence 3222 234555666665433222222111111111 01111112 01111122
Q ss_pred HHHHHhcCCCCEEEEe--chhHHHHHHH----HHHHh---cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccc
Q 003587 449 LGDLRNVRSGDCVVAF--SRREIFEVKM----AIEKH---TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519 (809)
Q Consensus 449 l~~l~~~~~g~~II~f--srk~~~~l~~----~L~~~---~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal 519 (809)
...+ ...+-..+|| +++.++.++. .+... ....+..++|+|+.++|.++...|+ .|+..++++|+++
T Consensus 299 ~~~~--~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~--~g~~~~~~st~Al 374 (851)
T COG1205 299 AALL--VRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK--EGELLGVIATNAL 374 (851)
T ss_pred HHHH--HHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh--cCCccEEecchhh
Confidence 2222 2244444555 5677777763 33222 1257899999999999999999999 8999999999999
Q ss_pred ccccccc-ccEEEEcCCCCCCCCCcccC-CHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 520 GMGLNLN-IRRVVFYSLSKYNGDKIIPV-PGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 520 ~~GIDip-V~~VI~~d~~K~dg~~~~P~-s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
+-||||. ++.||.++. |. +..++.||+|||||.+. .+..+....
T Consensus 375 elgidiG~ldavi~~g~---------P~~s~~~~~Q~~GRaGR~~~---~~l~~~v~~ 420 (851)
T COG1205 375 ELGIDIGSLDAVIAYGY---------PGVSVLSFRQRAGRAGRRGQ---ESLVLVVLR 420 (851)
T ss_pred hhceeehhhhhHhhcCC---------CCchHHHHHHhhhhccCCCC---CceEEEEeC
Confidence 9999995 999999998 88 99999999999999996 566665554
No 85
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.89 E-value=3.6e-22 Score=235.01 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=93.8
Q ss_pred HHHHHHHhc-CCC-CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRNV-RSG-DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~~-~~g-~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.++..+... ..+ .++||+ +...++.++..|.+. |+.+.++||.+.+.+|..+..+++ .| .|+||||++|||+
T Consensus 412 ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~-gi~~~~L~a~~~~~E~~ii~~ag~--~g--~VlIATdmAgRGt 486 (762)
T TIGR03714 412 ATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE-GIPHNLLNAQNAAKEAQIIAEAGQ--KG--AVTVATSMAGRGT 486 (762)
T ss_pred HHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC-CCCEEEecCCChHHHHHHHHHcCC--CC--eEEEEcccccccc
Confidence 445545432 333 455555 457888888888875 999999999999999988887776 45 7999999999999
Q ss_pred ccc----------ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHH
Q 003587 524 NLN----------IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 524 Dip----------V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~ 582 (809)
||| +..||++++ |....+ .||+|||||.|. .|.++.|++.++.-+.
T Consensus 487 DI~l~~~v~~~GGL~vIit~~~---------ps~rid-~qr~GRtGRqG~---~G~s~~~is~eD~l~~ 542 (762)
T TIGR03714 487 DIKLGKGVAELGGLAVIGTERM---------ENSRVD-LQLRGRSGRQGD---PGSSQFFVSLEDDLIK 542 (762)
T ss_pred CCCCCccccccCCeEEEEecCC---------CCcHHH-HHhhhcccCCCC---ceeEEEEEccchhhhh
Confidence 996 578899998 766666 999999999999 8999999987665554
No 86
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=1.3e-22 Score=252.43 Aligned_cols=257 Identities=18% Similarity=0.200 Sum_probs=162.2
Q ss_pred HHHHHhCCCCCCCcc--chhHHhhCCCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 271 RAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~~--~p~~~~l~grdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.+.+.......|++. ..+++++.|+|++++||||||||+.+++.+ ..++++||++|||+||.|+++.+..++..
T Consensus 68 ~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 68 EEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 344444334468872 234458999999999999999998543322 24678999999999999999999887432
Q ss_pred ----e---eeeeccccccc--------c--cCcceeeeeeeccc-----CCcccEEEEeccccccc-----------ccc
Q 003587 345 ----C---SLLTGQEKKLV--------P--FSNHIACTVEMVST-----DEMYDVAVIDEIQMMSD-----------ACR 391 (809)
Q Consensus 345 ----~---~l~~g~~~~~~--------~--~~~~i~~tie~lt~-----~rlv~~vVIDEAH~i~d-----------~~~ 391 (809)
+ .+++|...... . ....+++|+..+.. ...++++||||||+|++ +||
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF 227 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLLKLLGF 227 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHHHHcCC
Confidence 2 12444322111 0 12234445432210 11378999999999998 556
Q ss_pred hhH-HHHHHh----------------------hcccccc--cccCCch-HHHHHH-HHhhhc----------CCceEEee
Q 003587 392 GYA-WTRALL----------------------GLMADEI--HLCGDPS-VLDVVR-KICSET----------GDELHEQH 434 (809)
Q Consensus 392 g~~-~~~ill----------------------~l~~~~i--~l~~s~~-~~~li~-~l~~~~----------~~~~~~~~ 434 (809)
..+ +..++. .++...+ .+++++| ....+. .+.... ....+.+.
T Consensus 228 ~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~ 307 (1171)
T TIGR01054 228 SEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDV 307 (1171)
T ss_pred CHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEE
Confidence 543 333321 1222222 2345655 222111 111111 11123333
Q ss_pred ccccchhhHhHHHHHHHHHhcCCCCEEEEe-ch---hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCe
Q 003587 435 YERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SR---REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510 (809)
Q Consensus 435 ~~r~~~l~~~~k~ll~~l~~~~~g~~II~f-sr---k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~ 510 (809)
|..... ....+...+.... ...|||+ ++ +.+++++..|.+. |+++..+||++++ .+++.|+ +|++
T Consensus 308 ~~~~~~---~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~-g~~a~~lhg~~~~----~~l~~Fr--~G~~ 376 (1171)
T TIGR01054 308 YVEDED---LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENH-GVKAVAYHATKPK----EDYEKFA--EGEI 376 (1171)
T ss_pred EEeccc---HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhC-CceEEEEeCCCCH----HHHHHHH--cCCC
Confidence 321111 1234555555544 4456665 55 7899999999875 9999999999973 6899999 8999
Q ss_pred EEEEe----ccccccccccc--ccEEEEcCCCCC
Q 003587 511 DVLVA----SDAVGMGLNLN--IRRVVFYSLSKY 538 (809)
Q Consensus 511 ~ILVA----Tdal~~GIDip--V~~VI~~d~~K~ 538 (809)
+|||| ||+++||||+| |++|||||+|++
T Consensus 377 ~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 377 DVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999 59999999997 799999999985
No 87
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=2.8e-21 Score=226.13 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=96.3
Q ss_pred CCCCEEEEe--chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc---cc--
Q 003587 456 RSGDCVVAF--SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IR-- 528 (809)
Q Consensus 456 ~~g~~II~f--srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip---V~-- 528 (809)
..|..+++| +...++.++..|.+. |+.+..+||. +.+|+..+..|. .+...|+||||++|||+||+ |.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~-gi~~~~Lna~--q~~rEa~ii~~a--g~~g~VtIATnmAgRGtDI~l~~V~~~ 477 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKER-GIPHNVLNAK--NHEREAEIIAQA--GRKGAVTIATNMAGRGTDIKLEEVKEL 477 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHc-CCCeEEeeCC--hHHHHHHHHHhc--CCCceEEEEeccccCCcCCCccchhhc
Confidence 445555555 357889999999875 9999999999 889999999998 78999999999999999994 56
Q ss_pred ---EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 529 ---RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 529 ---~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
+||++++ |.|...|.|++|||||.|. .|.+..|++.++.-+..
T Consensus 478 GGl~VI~t~~---------p~s~ri~~q~~GRtGRqG~---~G~s~~~ls~eD~l~~~ 523 (745)
T TIGR00963 478 GGLYVIGTER---------HESRRIDNQLRGRSGRQGD---PGSSRFFLSLEDNLMRI 523 (745)
T ss_pred CCcEEEecCC---------CCcHHHHHHHhccccCCCC---CcceEEEEeccHHHHHh
Confidence 9999999 9999999999999999999 89999999877666543
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=1.5e-21 Score=229.51 Aligned_cols=266 Identities=24% Similarity=0.337 Sum_probs=184.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHc---------------CCcEEEEcccHhHHHHHHHHHH----hcCCceeeeecccc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFME---------------AKKGIYCSPLRLLAMEVFDKVN----ALGVYCSLLTGQEK 353 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~~---------------~~~~LvlsPtR~La~Q~~~~l~----~~g~~~~l~~g~~~ 353 (809)
...++++|||||+|||..++..+++ ..+++|++|+.+|+++++..+. .+|+.+.-.||+..
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~ 403 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQ 403 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccccc
Confidence 3458999999999999986555441 2268999999999999987554 46888888888755
Q ss_pred cc---cccCcceeeeeeec---ccC-------CcccEEEEecccccccccchhHHHHHHhhcccc------cccccC---
Q 003587 354 KL---VPFSNHIACTVEMV---STD-------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD------EIHLCG--- 411 (809)
Q Consensus 354 ~~---~~~~~~i~~tie~l---t~~-------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~------~i~l~~--- 411 (809)
.+ ......+++|+|.. |.. .+++++||||+|++.|. +|+....+....... ...+.+
T Consensus 404 l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSA 482 (1674)
T KOG0951|consen 404 LGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSA 482 (1674)
T ss_pred chhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecc
Confidence 32 22345567787643 333 13899999999999875 899886554332111 112221
Q ss_pred -CchHHHHHHHHhhhcCCceEEe--eccccchhh----------------HhHHHHH-HHHHhcCCCCEEEEe-chhHHH
Q 003587 412 -DPSVLDVVRKICSETGDELHEQ--HYERFKPLV----------------VEAKTLL-GDLRNVRSGDCVVAF-SRREIF 470 (809)
Q Consensus 412 -s~~~~~li~~l~~~~~~~~~~~--~~~r~~~l~----------------~~~k~ll-~~l~~~~~g~~II~f-srk~~~ 470 (809)
-|...++..-+.-.. ..++.- .| |+.|+. ....... +.+....+++++||. +|+++.
T Consensus 483 TLPNy~DV~~Fl~v~~-~glf~fd~sy-RpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ 560 (1674)
T KOG0951|consen 483 TLPNYEDVASFLRVDP-EGLFYFDSSY-RPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETA 560 (1674)
T ss_pred cCCchhhhHHHhccCc-ccccccCccc-CcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHH
Confidence 122333322111111 111110 11 222221 0111122 233445566777766 899988
Q ss_pred HHHHHHHH------------------------------------hcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEE
Q 003587 471 EVKMAIEK------------------------------------HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514 (809)
Q Consensus 471 ~l~~~L~~------------------------------------~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILV 514 (809)
+.|+.++. ...+..+++|+||...+|..+.+.|. +|.++|||
T Consensus 561 ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~--~g~iqvlv 638 (1674)
T KOG0951|consen 561 KTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFA--DGHIQVLV 638 (1674)
T ss_pred HHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHh--cCceeEEE
Confidence 88888852 13467899999999999999999999 89999999
Q ss_pred ecccccccccccccEEEEcCCCCCCCC--CcccCCHhHHHHHHcccCCCCC
Q 003587 515 ASDAVGMGLNLNIRRVVFYSLSKYNGD--KIIPVPGSQVKQIAGRAGRRGS 563 (809)
Q Consensus 515 ATdal~~GIDipV~~VI~~d~~K~dg~--~~~P~s~~~y~Qr~GRAGR~G~ 563 (809)
+|..+++|+|+|.+.||.-+...||+. +..+.++-+.+|+.|||||.+-
T Consensus 639 statlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 639 STATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred eehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCcc
Confidence 999999999999999999999999987 4678999999999999999875
No 89
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.88 E-value=6.4e-21 Score=231.36 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=97.1
Q ss_pred HHHHHHhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc
Q 003587 448 LLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526 (809)
Q Consensus 448 ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip 526 (809)
+++.+......++|||+ ++..+..+...|....|+++..+||+|++.+|.++++.|+...|..+|||||+++++|+|++
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq 563 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQ 563 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcc
Confidence 44555555555666666 46888999999965569999999999999999999999984335799999999999999997
Q ss_pred -ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEe
Q 003587 527 -IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 527 -V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~ 574 (809)
+++|||||+ |.+++.|.||+||+||.|. .|.+..++
T Consensus 564 ~a~~VInfDl---------P~nP~~~eQRIGR~~RiGQ---~~~V~i~~ 600 (956)
T PRK04914 564 FASHLVLFDL---------PFNPDLLEQRIGRLDRIGQ---KHDIQIHV 600 (956)
T ss_pred cccEEEEecC---------CCCHHHHHHHhcccccCCC---CceEEEEE
Confidence 999999999 9999999999999999999 67665554
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=1.4e-20 Score=214.87 Aligned_cols=260 Identities=17% Similarity=0.229 Sum_probs=180.7
Q ss_pred EEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhc----CCceeeeecccccccc----------c
Q 003587 297 IYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTGQEKKLVP----------F 358 (809)
Q Consensus 297 viv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~----g~~~~l~~g~~~~~~~----------~ 358 (809)
-++.|.-|||||++++.++ ..+.++..++||-.||.|.++.+.++ |+.+.+++|...+... .
T Consensus 286 RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~ 365 (677)
T COG1200 286 RLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE 365 (677)
T ss_pred HHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC
Confidence 3577889999999954443 45778999999999999999988764 7888999998766432 1
Q ss_pred CcceeeeeeecccC---CcccEEEEecccccccccchhHHHHHHhhccc---ccccccCCchHHHHHHHHhhhc------
Q 003587 359 SNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLGLMA---DEIHLCGDPSVLDVVRKICSET------ 426 (809)
Q Consensus 359 ~~~i~~tie~lt~~---rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~---~~i~l~~s~~~~~li~~l~~~~------ 426 (809)
...++.|.-.+... ..+.++||||=|+ ||..-|..+..-.. ..+.++++|-...+.-..-...
T Consensus 366 ~~ivVGTHALiQd~V~F~~LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id 440 (677)
T COG1200 366 IDIVVGTHALIQDKVEFHNLGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID 440 (677)
T ss_pred CCEEEEcchhhhcceeecceeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc
Confidence 23344454443322 1279999999999 67777877765554 3333445554333322221111
Q ss_pred ----CCceEEeeccccchhhHhHHHHHHHH-HhcCCCCEEEEec-h---------hHHHHHHHHHHHhc-CCeEEEEeCC
Q 003587 427 ----GDELHEQHYERFKPLVVEAKTLLGDL-RNVRSGDCVVAFS-R---------REIFEVKMAIEKHT-NHHCCVIYGA 490 (809)
Q Consensus 427 ----~~~~~~~~~~r~~~l~~~~k~ll~~l-~~~~~g~~II~fs-r---------k~~~~l~~~L~~~~-g~~v~~lhg~ 490 (809)
+...+....... .....+++.+ .....|..+|+.| . +.+.+++..|.... +.++..+||.
T Consensus 441 ElP~GRkpI~T~~i~~----~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGr 516 (677)
T COG1200 441 ELPPGRKPITTVVIPH----ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGR 516 (677)
T ss_pred cCCCCCCceEEEEecc----ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecC
Confidence 111122211110 0112333333 2233555554443 1 35777788887643 5679999999
Q ss_pred CCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceE
Q 003587 491 LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569 (809)
Q Consensus 491 l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ 569 (809)
|+++++++++++|+ +|+++|||||.+++.|||+| ....|..+..+| ..++..|-.||+||.+. .++
T Consensus 517 m~~~eKd~vM~~Fk--~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERF--------GLaQLHQLRGRVGRG~~---qSy 583 (677)
T COG1200 517 MKPAEKDAVMEAFK--EGEIDILVATTVIEVGVDVPNATVMVIENAERF--------GLAQLHQLRGRVGRGDL---QSY 583 (677)
T ss_pred CChHHHHHHHHHHH--cCCCcEEEEeeEEEecccCCCCeEEEEechhhh--------hHHHHHHhccccCCCCc---ceE
Confidence 99999999999999 89999999999999999998 999999998665 89999999999999998 899
Q ss_pred EEEEecccH
Q 003587 570 TTTLNLDDL 578 (809)
Q Consensus 570 ~i~~~~~d~ 578 (809)
|++++.+..
T Consensus 584 C~Ll~~~~~ 592 (677)
T COG1200 584 CVLLYKPPL 592 (677)
T ss_pred EEEEeCCCC
Confidence 999997554
No 91
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=7.2e-22 Score=199.19 Aligned_cols=250 Identities=18% Similarity=0.205 Sum_probs=165.4
Q ss_pred HHHHHhCCCCCCCc----cchhHHhhCCCeEEEEcCCCChHHHHHHHH----HHc-CC--cEEEEcccHhHHHHHHHHHH
Q 003587 271 RAMIESADLTKPHT----WFPFARVMKRKIIYHCGPTNSGKTYNALQR----FME-AK--KGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~----~~p~~~~l~grdviv~apTGSGKTl~~L~~----L~~-~~--~~LvlsPtR~La~Q~~~~l~ 339 (809)
+.++-..||+.|++ +||. ++-|-|++..|..|.|||.++..+ +.. .| .+++++.||+||-|+.++..
T Consensus 54 lraivdcgfehpsevqhecipq--ailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~ 131 (387)
T KOG0329|consen 54 LRAIVDCGFEHPSEVQHECIPQ--AILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYE 131 (387)
T ss_pred HHHHHhccCCCchHhhhhhhhH--HhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHH
Confidence 45777899999988 5666 578999999999999999884332 221 12 56889999999999966555
Q ss_pred hc-----CCceeeeeccccccc-----ccCcceeeeeeecccCCc-------------ccEEEEecccccccc-cchhHH
Q 003587 340 AL-----GVYCSLLTGQEKKLV-----PFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSDA-CRGYAW 395 (809)
Q Consensus 340 ~~-----g~~~~l~~g~~~~~~-----~~~~~i~~tie~lt~~rl-------------v~~vVIDEAH~i~d~-~~g~~~ 395 (809)
.+ ++++++..|...... ...+| +.+.||+++ +..+|+||++.|++. +...+.
T Consensus 132 rfskymP~vkvaVFfGG~~Ikkdee~lk~~Ph----ivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDv 207 (387)
T KOG0329|consen 132 RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPH----IVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 207 (387)
T ss_pred HHHhhCCCceEEEEEcceeccccHHHHhCCCe----EEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHH
Confidence 44 445555555432211 12333 344556553 788999999988741 122234
Q ss_pred HHHHhhcccccccccCCchHHHHHHHHhhhcCCceEE---------------eeccccchhhHhHHHHHHHHHhcCCCCE
Q 003587 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE---------------QHYERFKPLVVEAKTLLGDLRNVRSGDC 460 (809)
Q Consensus 396 ~~ill~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~---------------~~~~r~~~l~~~~k~ll~~l~~~~~g~~ 460 (809)
..++...+...+.++++++..+.++-++.....+... ++|..+.... ..+.+.+.|..+.-.+.
T Consensus 208 QEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd~LeFNQV 286 (387)
T KOG0329|consen 208 QEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLDVLEFNQV 286 (387)
T ss_pred HHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhhhhhhcce
Confidence 4556666677788888888777777666554333211 1221111111 11233333433344444
Q ss_pred EEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCC
Q 003587 461 VVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKY 538 (809)
Q Consensus 461 II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~ 538 (809)
+||. +.+. + .|. + + +|||+++|||+||. |..|+|||+
T Consensus 287 vIFvKsv~R-------------------------------l-~f~----k-r-~vat~lfgrgmdiervNi~~NYdm--- 325 (387)
T KOG0329|consen 287 VIFVKSVQR-------------------------------L-SFQ----K-R-LVATDLFGRGMDIERVNIVFNYDM--- 325 (387)
T ss_pred eEeeehhhh-------------------------------h-hhh----h-h-hHHhhhhccccCcccceeeeccCC---
Confidence 5444 2111 1 143 1 2 99999999999996 999999999
Q ss_pred CCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 539 dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
|.+..+|+||+|||||.|. .|.+++|++..
T Consensus 326 ------p~~~DtYlHrv~rAgrfGt---kglaitfvs~e 355 (387)
T KOG0329|consen 326 ------PEDSDTYLHRVARAGRFGT---KGLAITFVSDE 355 (387)
T ss_pred ------CCCchHHHHHhhhhhcccc---ccceeehhcch
Confidence 9999999999999999999 89999999754
No 92
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.85 E-value=4.4e-20 Score=213.67 Aligned_cols=101 Identities=20% Similarity=0.340 Sum_probs=85.8
Q ss_pred EEEEe-chhHHHHHHHHHHH--hcCCeEEEEeC--------CCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-c
Q 003587 460 CVVAF-SRREIFEVKMAIEK--HTNHHCCVIYG--------ALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-I 527 (809)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~--~~g~~v~~lhg--------~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V 527 (809)
.|||. +|..+..+..+|.+ ..|++...+-| +|++.++.++++.|+ +|+++|||||++++.||||+ +
T Consensus 416 ~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr--~G~~NvLVATSV~EEGLDI~ec 493 (746)
T KOG0354|consen 416 TIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR--DGEINVLVATSVAEEGLDIGEC 493 (746)
T ss_pred EEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh--CCCccEEEEecchhccCCcccc
Confidence 44444 57899999999874 22445444443 799999999999999 89999999999999999998 9
Q ss_pred cEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 528 ~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+.||-||. -.+.-..+||.|| ||+.. |.|+.+.+.
T Consensus 494 ~lVIcYd~---------~snpIrmIQrrGR-gRa~n----s~~vll~t~ 528 (746)
T KOG0354|consen 494 NLVICYDY---------SSNPIRMVQRRGR-GRARN----SKCVLLTTG 528 (746)
T ss_pred cEEEEecC---------CccHHHHHHHhcc-ccccC----CeEEEEEcc
Confidence 99999998 6689999999999 99987 999999873
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=2.1e-20 Score=216.09 Aligned_cols=283 Identities=16% Similarity=0.116 Sum_probs=165.3
Q ss_pred EEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHh-cCCceeeeecccccccc----------cCcce
Q 003587 298 YHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVP----------FSNHI 362 (809)
Q Consensus 298 iv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~----------~~~~i 362 (809)
++.||||||||.+++..+ ..++++||++|+++|+.|+++++++ +|..+.+++|....... ....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 467999999999976544 3567899999999999999999986 57777777765432211 12233
Q ss_pred eeee-eecccCCcccEEEEecccccccccc-h--hHHHH--HHhhccc--ccccccCCchHHHHHHHHhhhc--------
Q 003587 363 ACTV-EMVSTDEMYDVAVIDEIQMMSDACR-G--YAWTR--ALLGLMA--DEIHLCGDPSVLDVVRKICSET-------- 426 (809)
Q Consensus 363 ~~ti-e~lt~~rlv~~vVIDEAH~i~d~~~-g--~~~~~--ill~l~~--~~i~l~~s~~~~~li~~l~~~~-------- 426 (809)
+.|. .+..|-..+++|||||+|..+..+. + +..+. .+.+... ..+.+.++|.............
T Consensus 81 VGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r 160 (505)
T TIGR00595 81 IGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRR 160 (505)
T ss_pred ECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhh
Confidence 3342 2334444589999999999874321 1 11121 1222211 2223334554332221110000
Q ss_pred -----CCceEEeeccccchhhHhHHHHHHHHH-hcCCC-CEEEEechh--------------------------------
Q 003587 427 -----GDELHEQHYERFKPLVVEAKTLLGDLR-NVRSG-DCVVAFSRR-------------------------------- 467 (809)
Q Consensus 427 -----~~~~~~~~~~r~~~l~~~~k~ll~~l~-~~~~g-~~II~fsrk-------------------------------- 467 (809)
...+.............-...+++.+. ....| .++||.+|+
T Consensus 161 ~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~ 240 (505)
T TIGR00595 161 VSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGK 240 (505)
T ss_pred hcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCe
Confidence 000001001000000000123333332 22333 344443221
Q ss_pred -----------------------------HHHHHHHHHHHh-cCCeEEEEeCCCCHHHH--HHHHHHhhcCCCCeEEEEe
Q 003587 468 -----------------------------EIFEVKMAIEKH-TNHHCCVIYGALPPETR--RQQANLFNDQDNEFDVLVA 515 (809)
Q Consensus 468 -----------------------------~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R--~~~~~~F~~~~g~~~ILVA 515 (809)
.++.+...|.+. .+.++..+|++++...+ +.+++.|+ +|+.+|||+
T Consensus 241 l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~--~g~~~ILVg 318 (505)
T TIGR00595 241 LRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFA--NGKADILIG 318 (505)
T ss_pred EEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHh--cCCCCEEEe
Confidence 157777777764 36799999999987766 88999999 899999999
Q ss_pred ccccccccccc-ccEEE--EcCCCCCCCC-CcccCCHhHHHHHHcccCCCCCCCCceEEEEE-ecccHHHHHHHH
Q 003587 516 SDAVGMGLNLN-IRRVV--FYSLSKYNGD-KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIECL 585 (809)
Q Consensus 516 Tdal~~GIDip-V~~VI--~~d~~K~dg~-~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~-~~~d~~~l~~~l 585 (809)
|+++++|+|+| |..|+ ++|..-+.++ +..-.....|+|++|||||.+. .|.++.. +.++...+....
T Consensus 319 T~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~---~g~viiqt~~p~~~~~~~~~ 390 (505)
T TIGR00595 319 TQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAED---PGQVIIQTYNPNHPAIQAAL 390 (505)
T ss_pred CcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCC---CCEEEEEeCCCCCHHHHHHH
Confidence 99999999998 99886 4443111000 1111246789999999999998 7988843 344444443333
No 94
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.85 E-value=5.9e-20 Score=217.91 Aligned_cols=364 Identities=17% Similarity=0.197 Sum_probs=220.6
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHHcC------CcEEEEc-ccHhHHHHHHHHHHhc-CCceeeeeccccccc----cc
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFMEA------KKGIYCS-PLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLV----PF 358 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~~~------~~~Lvls-PtR~La~Q~~~~l~~~-g~~~~l~~g~~~~~~----~~ 358 (809)
+.+++.++++|.||+|||++..+.+++. ..-|||+ |+|.-|..+++++... |..++-..|..++.. ..
T Consensus 185 i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~ 264 (924)
T KOG0920|consen 185 IEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRE 264 (924)
T ss_pred HHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCc
Confidence 5788899999999999999987777642 3447777 9999999999999764 444444445444422 22
Q ss_pred Ccceeeeeee----cccCC---cccEEEEeccccccc-ccchhHHHHHHhhcccccccccCCchHH--------------
Q 003587 359 SNHIACTVEM----VSTDE---MYDVAVIDEIQMMSD-ACRGYAWTRALLGLMADEIHLCGDPSVL-------------- 416 (809)
Q Consensus 359 ~~~i~~tie~----lt~~r---lv~~vVIDEAH~i~d-~~~g~~~~~ill~l~~~~i~l~~s~~~~-------------- 416 (809)
.....||.-+ +.... .++++|+||+|...- .+|--...+.++...+.-..++++++..
T Consensus 265 t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi 344 (924)
T KOG0920|consen 265 TRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVI 344 (924)
T ss_pred eeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceE
Confidence 3445566322 22222 289999999999863 2222222333333332222222222211
Q ss_pred -----------HHHHHHhhhcCCceE--Eeec-cccc----------hhhHhH---HHHHHHHHhcC-CCCEEEEec-hh
Q 003587 417 -----------DVVRKICSETGDELH--EQHY-ERFK----------PLVVEA---KTLLGDLRNVR-SGDCVVAFS-RR 467 (809)
Q Consensus 417 -----------~li~~l~~~~~~~~~--~~~~-~r~~----------~l~~~~---k~ll~~l~~~~-~g~~II~fs-rk 467 (809)
-..+++...+..... .+.. .... ...++. ..++..+.... .|.++||.. -.
T Consensus 345 ~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~ 424 (924)
T KOG0920|consen 345 TIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWE 424 (924)
T ss_pred eecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHH
Confidence 111111111110000 0000 0000 000111 23344443334 455555554 58
Q ss_pred HHHHHHHHHHHh------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCC---
Q 003587 468 EIFEVKMAIEKH------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK--- 537 (809)
Q Consensus 468 ~~~~l~~~L~~~------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K--- 537 (809)
++..++..|... ...-+.++|+.|+.++++.++... |.|..+||+||++++.+|.|| |-+||+.+..|
T Consensus 425 eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p--p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~ 502 (924)
T KOG0920|consen 425 EILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP--PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKS 502 (924)
T ss_pred HHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC--CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeee
Confidence 899999888642 135688999999999888887766 489999999999999999997 99999999876
Q ss_pred CCCC------CcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHc-CCchHHHHhcCCCcHHHHHHHHhc
Q 003587 538 YNGD------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK-QPFEVVKKVGLFPFFEQVELFAGQ 610 (809)
Q Consensus 538 ~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~-~~~~~~~~~~~~p~~~~l~~~~~~ 610 (809)
||.. ...|.|.++..||.|||||.-. |.||.+|+... ...++. ...|++.+..+. ..|-+
T Consensus 503 yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~----G~cy~L~~~~~--~~~~~~~~q~PEilR~pL~-------~l~L~ 569 (924)
T KOG0920|consen 503 YDPERKVSCLLLSWVSKANAKQRRGRAGRVRP----GICYHLYTRSR--YEKLMLAYQLPEILRTPLE-------ELCLH 569 (924)
T ss_pred ecccCCcchhheeeccccchHHhcccccCccC----CeeEEeechhh--hhhcccccCChHHHhChHH-------Hhhhe
Confidence 7765 4678999999999999999987 99999997643 223333 566777665542 22222
Q ss_pred CccchHHHHHHHHhhhcccCCccccCCcchHHHHHHHHHHhcCCCcccccc-----ccCCCCCCcchHHH
Q 003587 611 LSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFN-----FCFAPVNIRDPKAM 675 (809)
Q Consensus 611 ~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~L~~~~~l~l~d~~~-----~c~~P~~~~~~~~~ 675 (809)
..-+....+.+++..... ....+.+......|..+++|.-.+..+ .+.-|++.+-.+++
T Consensus 570 iK~l~~~~~~~fLskald------pP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~l 633 (924)
T KOG0920|consen 570 IKVLEQGSIKAFLSKALD------PPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLL 633 (924)
T ss_pred eeeccCCCHHHHHHHhcC------CCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhh
Confidence 221112222233333221 234456677777888888777777543 45668877765543
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=6.4e-20 Score=219.26 Aligned_cols=287 Identities=15% Similarity=0.147 Sum_probs=168.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHh-cCCceeeeecccccccc----------c
Q 003587 294 RKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVP----------F 358 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~----------~ 358 (809)
++++++.||||||||.+++.++ ..++++||++|+++|+.|+++++++ +|..+.+++|....... .
T Consensus 162 ~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~ 241 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGE 241 (679)
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5789999999999999976544 3567899999999999999999987 57778777776432111 1
Q ss_pred Ccceeeee-eecccCCcccEEEEecccccccccc-h--hHHHHH--HhhcccccccccC--CchHHHHHHHH--------
Q 003587 359 SNHIACTV-EMVSTDEMYDVAVIDEIQMMSDACR-G--YAWTRA--LLGLMADEIHLCG--DPSVLDVVRKI-------- 422 (809)
Q Consensus 359 ~~~i~~ti-e~lt~~rlv~~vVIDEAH~i~d~~~-g--~~~~~i--ll~l~~~~i~l~~--s~~~~~li~~l-------- 422 (809)
...++.|. .+..|-..++++||||+|..+..+. + ...+.+ +.........+++ +|.........
T Consensus 242 ~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~ 321 (679)
T PRK05580 242 AKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANAQQGRYRLLR 321 (679)
T ss_pred CCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhccceeEEE
Confidence 23344443 2223334489999999998764321 1 112221 1222222233333 33322221110
Q ss_pred -hhhc----CCceEEeeccc-cc--hhhHhHHHHHHHHHh-cCCC-CEEEEech--------------------------
Q 003587 423 -CSET----GDELHEQHYER-FK--PLVVEAKTLLGDLRN-VRSG-DCVVAFSR-------------------------- 466 (809)
Q Consensus 423 -~~~~----~~~~~~~~~~r-~~--~l~~~~k~ll~~l~~-~~~g-~~II~fsr-------------------------- 466 (809)
.... ...+....... .. ....-...++..+.+ ...| +++++.+|
T Consensus 322 l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~ 401 (679)
T PRK05580 322 LTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLT 401 (679)
T ss_pred eccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCcee
Confidence 0000 00110000000 00 000000122222222 2223 23333222
Q ss_pred -----------------------------------hHHHHHHHHHHHh-cCCeEEEEeCCCC--HHHHHHHHHHhhcCCC
Q 003587 467 -----------------------------------REIFEVKMAIEKH-TNHHCCVIYGALP--PETRRQQANLFNDQDN 508 (809)
Q Consensus 467 -----------------------------------k~~~~l~~~L~~~-~g~~v~~lhg~l~--~~~R~~~~~~F~~~~g 508 (809)
..++.+++.|.+. .+.++..+|+++. .++++++++.|+ +|
T Consensus 402 ~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~--~g 479 (679)
T PRK05580 402 LHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFA--RG 479 (679)
T ss_pred EECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHh--cC
Confidence 2456777777764 3678999999987 467899999999 89
Q ss_pred CeEEEEeccccccccccc-ccEEEEcCCCC--CC-CCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEe-cccHHHHHH
Q 003587 509 EFDVLVASDAVGMGLNLN-IRRVVFYSLSK--YN-GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-LDDLDYLIE 583 (809)
Q Consensus 509 ~~~ILVATdal~~GIDip-V~~VI~~d~~K--~d-g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~-~~d~~~l~~ 583 (809)
+.+|||+|+++++|+|+| |..|+..+... +- +.+..-.....|.|++|||||.+. .|.++... .++...+..
T Consensus 480 ~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~---~g~viiqT~~p~~~~~~~ 556 (679)
T PRK05580 480 EADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEK---PGEVLIQTYHPEHPVIQA 556 (679)
T ss_pred CCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCC---CCEEEEEeCCCCCHHHHH
Confidence 999999999999999998 99996554311 10 001111235789999999999988 79998654 344333333
Q ss_pred HH
Q 003587 584 CL 585 (809)
Q Consensus 584 ~l 585 (809)
++
T Consensus 557 ~~ 558 (679)
T PRK05580 557 LL 558 (679)
T ss_pred HH
Confidence 33
No 96
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6.8e-20 Score=198.90 Aligned_cols=288 Identities=24% Similarity=0.328 Sum_probs=183.1
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEc-ccHhHHHHHHHHHHhcCCceeeeecccccc-cccCcc----
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCS-PLRLLAMEVFDKVNALGVYCSLLTGQEKKL-VPFSNH---- 361 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~Lvls-PtR~La~Q~~~~l~~~g~~~~l~~g~~~~~-~~~~~~---- 361 (809)
.+++.++++|.||||||+++.++.. ....++.|+ |.|..|.+++.++... ..+.-|++++. +++...
T Consensus 60 ~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadE---MDv~lG~EVGysIrfEdC~~~~ 136 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFEDCTSPN 136 (699)
T ss_pred hcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHH---hccccchhccccccccccCChh
Confidence 6788999999999999999555443 334667776 9999999999999763 22223444442 122222
Q ss_pred ---eeeeeee-----cccCCc--ccEEEEecccccccccchhHHHHHHhhcccc--------cccccCCchHHHHHHHHh
Q 003587 362 ---IACTVEM-----VSTDEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMAD--------EIHLCGDPSVLDVVRKIC 423 (809)
Q Consensus 362 ---i~~tie~-----lt~~rl--v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~--------~i~l~~s~~~~~li~~l~ 423 (809)
-+||-.| ++...+ ++++|+||||... .-+.+++|+... ++.++..+......+.+-
T Consensus 137 T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERt------lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf 210 (699)
T KOG0925|consen 137 TLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERT------LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYF 210 (699)
T ss_pred HHHHHhcchHHHHHHhhCcccccccEEEechhhhhh------HHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHh
Confidence 1244333 222222 8999999999976 456666666443 122222221111111111
Q ss_pred hh------cCCceEEeecc-ccchhhHh--HHHHHHHHHhcCCCCEEEEec-hhHHHHHHHHHHH--------hcCCeEE
Q 003587 424 SE------TGDELHEQHYE-RFKPLVVE--AKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEK--------HTNHHCC 485 (809)
Q Consensus 424 ~~------~~~~~~~~~~~-r~~~l~~~--~k~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~--------~~g~~v~ 485 (809)
.. .+...+...|. ...+.+.+ .+.+++++....+|++++|.+ ..++++.++.+.. ....+|.
T Consensus 211 ~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~ 290 (699)
T KOG0925|consen 211 GNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVV 290 (699)
T ss_pred CCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 10 11111112221 11122222 246778888888999999996 4677777776653 1236889
Q ss_pred EEeCCCCHHHHHHHHHHhhc---CCCCeEEEEeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHH
Q 003587 486 VIYGALPPETRRQQANLFND---QDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVK 552 (809)
Q Consensus 486 ~lhg~l~~~~R~~~~~~F~~---~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~ 552 (809)
++| |.++..+++.--. ..-..+|+|+|++++..+.+| |.+||+-++.| ||++ -+.|+|.++..
T Consensus 291 PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~ 366 (699)
T KOG0925|consen 291 PLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQ 366 (699)
T ss_pred ecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHH
Confidence 999 4333333322210 112478999999999999998 99999999876 8887 48899999999
Q ss_pred HHHcccCCCCCCCCceEEEEEecccHHHHHHHHcCCchHHHHhcC
Q 003587 553 QIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGL 597 (809)
Q Consensus 553 Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~~~~~~~~~~~ 597 (809)
||+|||||..+ |.|+++|++. ..-.++...+.+++.+..+
T Consensus 367 qR~gragrt~p----GkcfrLYte~-~~~~em~~~typeilrsNL 406 (699)
T KOG0925|consen 367 QRAGRAGRTRP----GKCFRLYTEE-AFEKEMQPQTYPEILRSNL 406 (699)
T ss_pred HHhhhccCCCC----CceEEeecHH-hhhhcCCCCCcHHHHHHhh
Confidence 99999999987 9999999764 2334555566666665554
No 97
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=202.07 Aligned_cols=112 Identities=17% Similarity=0.356 Sum_probs=99.9
Q ss_pred HHHhcCCCCEEEEe-chhHHHHHHHHHHHhcC--CeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-
Q 003587 451 DLRNVRSGDCVVAF-SRREIFEVKMAIEKHTN--HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN- 526 (809)
Q Consensus 451 ~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g--~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip- 526 (809)
.+.++...++|||+ ++.+|+.+.+.+.+..| +.|+++||+..|.+|.+.++.|+ .+.++.|||||+++|||||-
T Consensus 499 ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fk--k~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 499 AIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFK--KFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhh--hcCeEEEEEehhhhccccccC
Confidence 34455566677777 67899999999988644 68999999999999999999999 89999999999999999995
Q ss_pred ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 527 V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+-++||..+ |.....|+||+||+||+-+ -|.+|.++..
T Consensus 577 ~p~~invtl---------pd~k~nyvhrigrvgraer---mglaislvat 614 (725)
T KOG0349|consen 577 LPFMINVTL---------PDDKTNYVHRIGRVGRAER---MGLAISLVAT 614 (725)
T ss_pred CceEEEEec---------Ccccchhhhhhhccchhhh---cceeEEEeec
Confidence 999999999 9999999999999999998 8999999853
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.84 E-value=1.1e-19 Score=207.53 Aligned_cols=250 Identities=18% Similarity=0.215 Sum_probs=162.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHcC-CcEEEEcccHhHHHHHHHHHHhcCC---ceeeeecccccccccCcceeeeeeec
Q 003587 294 RKIIYHCGPTNSGKTYNALQRFMEA-KKGIYCSPLRLLAMEVFDKVNALGV---YCSLLTGQEKKLVPFSNHIACTVEMV 369 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L~~~-~~~LvlsPtR~La~Q~~~~l~~~g~---~~~l~~g~~~~~~~~~~~i~~tie~l 369 (809)
.+..++++|||+|||..++..+..- ..+|||+|+++|+.|..+.+..... ..+.++|....... ....+.|+..+
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~-~~i~vat~qtl 133 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEP-AKVTVATVQTL 133 (442)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecCceeccCC-CcEEEEEhHHH
Confidence 7889999999999999987776643 3499999999999999988877533 35666666554332 34556665554
Q ss_pred ccC--------CcccEEEEecccccccccchhHHHHHHhhcccc--cccccCCchHHH-----HHHHHh-----------
Q 003587 370 STD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD--EIHLCGDPSVLD-----VVRKIC----------- 423 (809)
Q Consensus 370 t~~--------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~--~i~l~~s~~~~~-----li~~l~----------- 423 (809)
... +.+++||+||||++.... ++.+...+.+. .+-|+++|...+ .+..+.
T Consensus 134 ~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~ 209 (442)
T COG1061 134 ARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKE 209 (442)
T ss_pred hhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHH
Confidence 442 128999999999998532 22222222211 233333322111 111111
Q ss_pred --h-hcCCce-EEeecc---------------ccch-----------------hhHhH---HHHHHHHHhc-CCCCEEEE
Q 003587 424 --S-ETGDEL-HEQHYE---------------RFKP-----------------LVVEA---KTLLGDLRNV-RSGDCVVA 463 (809)
Q Consensus 424 --~-~~~~~~-~~~~~~---------------r~~~-----------------l~~~~---k~ll~~l~~~-~~g~~II~ 463 (809)
. ....+. +..... +... ..... ..+...+..+ ....++||
T Consensus 210 li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif 289 (442)
T COG1061 210 LIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIF 289 (442)
T ss_pred HHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 000010 000000 0000 00000 0122222222 23345555
Q ss_pred ec-hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCC
Q 003587 464 FS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGD 541 (809)
Q Consensus 464 fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~ 541 (809)
.+ ...+..++..+... +. +..+.|..++.+|..+++.|+ .|.+++||++.++..|+|+| ++.+|....
T Consensus 290 ~~~~~~a~~i~~~~~~~-~~-~~~it~~t~~~eR~~il~~fr--~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~------ 359 (442)
T COG1061 290 ASDVEHAYEIAKLFLAP-GI-VEAITGETPKEEREAILERFR--TGGIKVLVTVKVLDEGVDIPDADVLIILRP------ 359 (442)
T ss_pred eccHHHHHHHHHHhcCC-Cc-eEEEECCCCHHHHHHHHHHHH--cCCCCEEEEeeeccceecCCCCcEEEEeCC------
Confidence 54 47888888888764 55 999999999999999999999 77899999999999999999 999999998
Q ss_pred CcccCCHhHHHHHHcccCCC
Q 003587 542 KIIPVPGSQVKQIAGRAGRR 561 (809)
Q Consensus 542 ~~~P~s~~~y~Qr~GRAGR~ 561 (809)
..|...|.||+||.-|.
T Consensus 360 ---t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 360 ---TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred ---CCcHHHHHHHhhhhccC
Confidence 77999999999999994
No 99
>PRK09694 helicase Cas3; Provisional
Probab=99.82 E-value=8.4e-19 Score=211.80 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=77.6
Q ss_pred CCCCE-EEEe-chhHHHHHHHHHHHhc--CCeEEEEeCCCCHHHH----HHHHHHhhcCCCC---eEEEEeccccccccc
Q 003587 456 RSGDC-VVAF-SRREIFEVKMAIEKHT--NHHCCVIYGALPPETR----RQQANLFNDQDNE---FDVLVASDAVGMGLN 524 (809)
Q Consensus 456 ~~g~~-II~f-srk~~~~l~~~L~~~~--g~~v~~lhg~l~~~~R----~~~~~~F~~~~g~---~~ILVATdal~~GID 524 (809)
..|.+ +||+ +.+.+.+++..|.+.. ...+..+||.+++.+| .++++.|.. +|+ ..|||||+++++|||
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk-~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGK-NGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHh-cCCcCCCeEEEECcchhheee
Confidence 44544 4444 4689999999998753 2579999999999999 456778831 455 479999999999999
Q ss_pred ccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCC
Q 003587 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (809)
Q Consensus 525 ipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (809)
|+++.||.... | ++.++||+||+||.+.
T Consensus 637 Id~DvlItdla---------P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 637 LDFDWLITQLC---------P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred cCCCeEEECCC---------C--HHHHHHHHhccCCCCC
Confidence 99999998766 5 7899999999999986
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.79 E-value=1.5e-18 Score=202.12 Aligned_cols=306 Identities=20% Similarity=0.297 Sum_probs=196.2
Q ss_pred hCCCCCCCcc----chhHHhhCCCeEEEEcCCCChHHHHH----HH-HHHcCCcEEEEcccHhHHHHHHHHHHhcCCcee
Q 003587 276 SADLTKPHTW----FPFARVMKRKIIYHCGPTNSGKTYNA----LQ-RFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCS 346 (809)
Q Consensus 276 ~~g~~~Pt~~----~p~~~~l~grdviv~apTGSGKTl~~----L~-~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~ 346 (809)
..|......| +..++++.+++.|..+||+.|||+++ +. .|.....++.+.|..+-+++-...+..++.+.+
T Consensus 218 ~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 218 DKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred hhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccC
Confidence 3444444444 44566789999999999999999993 22 233566778888988888888888877755554
Q ss_pred e----eeccccccc--ccCcceeeeeeecc--------cCCc--ccEEEEecccccccccchhHHHHHHhhc----cccc
Q 003587 347 L----LTGQEKKLV--PFSNHIACTVEMVS--------TDEM--YDVAVIDEIQMMSDACRGYAWTRALLGL----MADE 406 (809)
Q Consensus 347 l----~~g~~~~~~--~~~~~i~~tie~lt--------~~rl--v~~vVIDEAH~i~d~~~g~~~~~ill~l----~~~~ 406 (809)
+ +.|...... ......+||+|++. .+++ +.+|||||-|++.|.++|......+..+ ....
T Consensus 298 ~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~ 377 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETS 377 (1008)
T ss_pred CcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccc
Confidence 4 333322211 12233567888753 2333 8999999999999999999987655332 1112
Q ss_pred ccccC-CchHHHHHHHHhhhcCCceEEeeccccchh---------hHh--HHHHHHHHH---------------------
Q 003587 407 IHLCG-DPSVLDVVRKICSETGDELHEQHYERFKPL---------VVE--AKTLLGDLR--------------------- 453 (809)
Q Consensus 407 i~l~~-s~~~~~li~~l~~~~~~~~~~~~~~r~~~l---------~~~--~k~ll~~l~--------------------- 453 (809)
+.+++ +++. ..+..+..+....+....| |+.++ ..+ ...++..+.
T Consensus 378 ~~iIGMSATi-~N~~lL~~~L~A~~y~t~f-RPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~te 455 (1008)
T KOG0950|consen 378 VQIIGMSATI-PNNSLLQDWLDAFVYTTRF-RPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTE 455 (1008)
T ss_pred eeEeeeeccc-CChHHHHHHhhhhheeccc-CcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhh
Confidence 22222 3332 2222233333333332222 11111 000 111221111
Q ss_pred hcCCCC-EEEEe-chhHHHHHHHHHHHh-------------------------------------cCCeEEEEeCCCCHH
Q 003587 454 NVRSGD-CVVAF-SRREIFEVKMAIEKH-------------------------------------TNHHCCVIYGALPPE 494 (809)
Q Consensus 454 ~~~~g~-~II~f-srk~~~~l~~~L~~~-------------------------------------~g~~v~~lhg~l~~~ 494 (809)
..+.+. +++|+ +++.|+.++..+... ....++++|+|++.+
T Consensus 456 t~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~e 535 (1008)
T KOG0950|consen 456 TAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSE 535 (1008)
T ss_pred hhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccc
Confidence 112333 55555 578887777555220 235689999999999
Q ss_pred HHHHHHHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEe
Q 003587 495 TRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 495 ~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~ 574 (809)
+|+.+...|+ .|-+.|++||+.++.|+|+|+++||.--+ ++-+. +.+.-+|.|++|||||.|- ...|.+++.+
T Consensus 536 ER~~iE~afr--~g~i~vl~aTSTlaaGVNLPArRVIiraP-~~g~~---~l~~~~YkQM~GRAGR~gi-dT~GdsiLI~ 608 (1008)
T KOG0950|consen 536 EREIIEAAFR--EGNIFVLVATSTLAAGVNLPARRVIIRAP-YVGRE---FLTRLEYKQMVGRAGRTGI-DTLGDSILII 608 (1008)
T ss_pred hHHHHHHHHH--hcCeEEEEecchhhccCcCCcceeEEeCC-ccccc---hhhhhhHHhhhhhhhhccc-ccCcceEEEe
Confidence 9999999999 89999999999999999999999988654 33332 6789999999999999996 5689999988
Q ss_pred cc-cHHHHHHHHcCCch
Q 003587 575 LD-DLDYLIECLKQPFE 590 (809)
Q Consensus 575 ~~-d~~~l~~~l~~~~~ 590 (809)
.. +.....+++..+.+
T Consensus 609 k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 609 KSSEKKRVRELVNSPLK 625 (1008)
T ss_pred eccchhHHHHHHhcccc
Confidence 64 44444566655443
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.2e-17 Score=175.61 Aligned_cols=277 Identities=17% Similarity=0.233 Sum_probs=176.5
Q ss_pred hhCCCeEEEEcCCCChHHHHHH----HHHHcCCcEEEEcccHhHHHHHHHHHHhc--CCceeeeecccccccccCcceee
Q 003587 291 VMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPFSNHIAC 364 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L----~~L~~~~~~LvlsPtR~La~Q~~~~l~~~--g~~~~l~~g~~~~~~~~~~~i~~ 364 (809)
+-+.+++++.|-||+|||.... +++..++.+.+.+|+...+.+++.++++- +..+.++.|+...... ++.+++
T Consensus 113 i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr-~plvVa 191 (441)
T COG4098 113 IKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR-APLVVA 191 (441)
T ss_pred HHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc-ccEEEE
Confidence 4678899999999999998843 34456778888899999999999999874 4566777777655444 555555
Q ss_pred ee-eecccCCcccEEEEecccccccccchhHHHHHHhhcc---cccccccCCchHHHHHHHHhhhcC-----------Cc
Q 003587 365 TV-EMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM---ADEIHLCGDPSVLDVVRKICSETG-----------DE 429 (809)
Q Consensus 365 ti-e~lt~~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~---~~~i~l~~s~~~~~li~~l~~~~~-----------~~ 429 (809)
|. ..+.-..-+|++||||+|...-. -...+..++.... ...+.++++|+ .++.+++..... ..
T Consensus 192 TtHQLlrFk~aFD~liIDEVDAFP~~-~d~~L~~Av~~ark~~g~~IylTATp~-k~l~r~~~~g~~~~~klp~RfH~~p 269 (441)
T COG4098 192 TTHQLLRFKQAFDLLIIDEVDAFPFS-DDQSLQYAVKKARKKEGATIYLTATPT-KKLERKILKGNLRILKLPARFHGKP 269 (441)
T ss_pred ehHHHHHHHhhccEEEEecccccccc-CCHHHHHHHHHhhcccCceEEEecCCh-HHHHHHhhhCCeeEeecchhhcCCC
Confidence 43 33333334899999999987410 0111222222221 23456666665 222222222111 11
Q ss_pred eEEeeccccchhh--HhH----HHHHHHHHhcCC--CCEEEEec-hhHHHHHHHHHHH-hcCCeEEEEeCCCCHHHHHHH
Q 003587 430 LHEQHYERFKPLV--VEA----KTLLGDLRNVRS--GDCVVAFS-RREIFEVKMAIEK-HTNHHCCVIYGALPPETRRQQ 499 (809)
Q Consensus 430 ~~~~~~~r~~~l~--~~~----k~ll~~l~~~~~--g~~II~fs-rk~~~~l~~~L~~-~~g~~v~~lhg~l~~~~R~~~ 499 (809)
+.+-.|....+.. +.. ..+...|+.... ...+||+. -...++++..|.+ .....++.+|+. ...|.+.
T Consensus 270 LpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~Ek 347 (441)
T COG4098 270 LPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEK 347 (441)
T ss_pred CCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHH
Confidence 1111111111111 000 134455544332 34566665 4677888888854 334566888887 3578899
Q ss_pred HHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccH
Q 003587 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578 (809)
Q Consensus 500 ~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~ 578 (809)
.+.|+ +|++++||+|.+++||+++| |+.+|.-.-. +--+.+..+|++||+||.-. .|.|.++.|...-.
T Consensus 348 V~~fR--~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh-------~vfTesaLVQIaGRvGRs~~-~PtGdv~FFH~G~s 417 (441)
T COG4098 348 VEAFR--DGKITLLITTTILERGVTFPNVDVFVLGAEH-------RVFTESALVQIAGRVGRSLE-RPTGDVLFFHYGKS 417 (441)
T ss_pred HHHHH--cCceEEEEEeehhhcccccccceEEEecCCc-------ccccHHHHHHHhhhccCCCc-CCCCcEEEEeccch
Confidence 99999 89999999999999999998 8765543321 12388999999999999875 67999999875444
Q ss_pred HHHH
Q 003587 579 DYLI 582 (809)
Q Consensus 579 ~~l~ 582 (809)
..+.
T Consensus 418 kaM~ 421 (441)
T COG4098 418 KAMK 421 (441)
T ss_pred HHHH
Confidence 3333
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.5e-17 Score=196.73 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=97.4
Q ss_pred HHHHHHHh-cCCCCE-EEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRN-VRSGDC-VVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~-~~~g~~-II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.++..+.. +..+.. +|++ +...++.++..|.+. |+.+.++||++.+.++..+.++++ .|. |+|||+++|||+
T Consensus 428 al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~-gi~~~~Lna~~~~~Ea~ii~~ag~--~g~--VtIATnmAGRGt 502 (796)
T PRK12906 428 AVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA-GIPHAVLNAKNHAKEAEIIMNAGQ--RGA--VTIATNMAGRGT 502 (796)
T ss_pred HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC-CCCeeEecCCcHHHHHHHHHhcCC--Cce--EEEEeccccCCC
Confidence 44454432 234444 4444 457889999999885 999999999999888888888886 554 999999999999
Q ss_pred cc---c-cc-----EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 524 NL---N-IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 524 Di---p-V~-----~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
|| + |. +||++++ |.|...|.|+.|||||.|. .|.+..|++.++.-++.
T Consensus 503 DI~l~~~V~~~GGLhVI~te~---------pes~ri~~Ql~GRtGRqG~---~G~s~~~~sleD~l~~~ 559 (796)
T PRK12906 503 DIKLGPGVKELGGLAVIGTER---------HESRRIDNQLRGRSGRQGD---PGSSRFYLSLEDDLMRR 559 (796)
T ss_pred CCCCCcchhhhCCcEEEeeec---------CCcHHHHHHHhhhhccCCC---CcceEEEEeccchHHHh
Confidence 99 3 88 9999999 9999999999999999999 89999999876555543
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.75 E-value=5.4e-17 Score=201.31 Aligned_cols=257 Identities=17% Similarity=0.157 Sum_probs=154.9
Q ss_pred CCeEEEEcCCCChHHHHHHH---HHHc---CCcEEEEcccHhHHHHHHHHHHhcCCcee-----eeeccc---ccccccC
Q 003587 294 RKIIYHCGPTNSGKTYNALQ---RFME---AKKGIYCSPLRLLAMEVFDKVNALGVYCS-----LLTGQE---KKLVPFS 359 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~---~L~~---~~~~LvlsPtR~La~Q~~~~l~~~g~~~~-----l~~g~~---~~~~~~~ 359 (809)
.+..++++|||||||.+++. .++. .+++|+|+|+++|+.|..+.+..++.... +.+... .......
T Consensus 433 ~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~ 512 (1123)
T PRK11448 433 QREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLEDKFPEDET 512 (1123)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhhhcccCCC
Confidence 46799999999999987432 3332 35899999999999999999998754332 111111 1111223
Q ss_pred cceeeeeeecc-------------cCCcccEEEEeccccccc---------ccc------hhHHHHHHhhcccccccccC
Q 003587 360 NHIACTVEMVS-------------TDEMYDVAVIDEIQMMSD---------ACR------GYAWTRALLGLMADEIHLCG 411 (809)
Q Consensus 360 ~~i~~tie~lt-------------~~rlv~~vVIDEAH~i~d---------~~~------g~~~~~ill~l~~~~i~l~~ 411 (809)
..+++|+..+. +...+++|||||||+-.. .+| ...|+.++....+..+-|++
T Consensus 513 ~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTA 592 (1123)
T PRK11448 513 KVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTA 592 (1123)
T ss_pred CEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEec
Confidence 44556653220 111288999999999531 011 23566666544444555555
Q ss_pred CchHH------------HHHHHHhhhcCC----ceE-Eee----------------ccc----c----chhhH--h----
Q 003587 412 DPSVL------------DVVRKICSETGD----ELH-EQH----------------YER----F----KPLVV--E---- 444 (809)
Q Consensus 412 s~~~~------------~li~~l~~~~~~----~~~-~~~----------------~~r----~----~~l~~--~---- 444 (809)
+|... .+.+.+...... ... ... ++. . .+... .
T Consensus 593 TP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~ 672 (1123)
T PRK11448 593 TPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDF 672 (1123)
T ss_pred CCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHH
Confidence 55310 000001000000 000 000 000 0 00000 0
Q ss_pred ---------H----HHHHHHHHhcCCCCEEEEe-chhHHHHHHHHHHHhc-----C---CeEEEEeCCCCHHHHHHHHHH
Q 003587 445 ---------A----KTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHT-----N---HHCCVIYGALPPETRRQQANL 502 (809)
Q Consensus 445 ---------~----k~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~-----g---~~v~~lhg~l~~~~R~~~~~~ 502 (809)
. +.++..+....+++.|||+ ++..++.++..|.+.. + ..|..+||+.+ .+..+++.
T Consensus 673 ~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~ 750 (1123)
T PRK11448 673 NRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRR 750 (1123)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHH
Confidence 0 1122233233456777777 4577777777766521 2 25677999986 46789999
Q ss_pred hhcCCCCe-EEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCC
Q 003587 503 FNDQDNEF-DVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (809)
Q Consensus 503 F~~~~g~~-~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (809)
|+ ++.. .|+|+++++.+|+|+| |.+||++.+ +.|...|+|++||+.|...
T Consensus 751 Fk--~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp---------vkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 751 FK--NERLPNIVVTVDLLTTGIDVPSICNLVFLRR---------VRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred Hh--CCCCCeEEEEecccccCCCcccccEEEEecC---------CCCHHHHHHHHhhhccCCc
Confidence 98 5665 7999999999999998 999999999 7799999999999999643
No 104
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.9e-16 Score=185.42 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=93.8
Q ss_pred HHHHHHHh-cCCCC-EEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRN-VRSGD-CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~-~~~g~-~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.+...+.. +..|. ++|++ |...++.++..|.+. |+++.++||. +.+|+..+..|. .+...|+||||++|||+
T Consensus 418 aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~-gi~~~vLnak--q~eREa~Iia~A--g~~g~VtIATNmAGRGt 492 (830)
T PRK12904 418 AVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA-GIPHNVLNAK--NHEREAEIIAQA--GRPGAVTIATNMAGRGT 492 (830)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCceEeccCc--hHHHHHHHHHhc--CCCceEEEecccccCCc
Confidence 44444433 23444 44444 458889999998875 9999999996 889999999998 89999999999999999
Q ss_pred ccccc---------------------------------------EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCC
Q 003587 524 NLNIR---------------------------------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564 (809)
Q Consensus 524 DipV~---------------------------------------~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~ 564 (809)
||+.. +||-... |.|.--=.|-.|||||-|.
T Consensus 493 DI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer---------hesrRid~QlrGRagRQGd- 562 (830)
T PRK12904 493 DIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER---------HESRRIDNQLRGRSGRQGD- 562 (830)
T ss_pred CccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc---------CchHHHHHHhhcccccCCC-
Confidence 99764 5565554 7788888999999999998
Q ss_pred CCceEEEEEecccHHHHH
Q 003587 565 YPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 565 ~~~G~~i~~~~~d~~~l~ 582 (809)
.|.+-.|++-++.-+.
T Consensus 563 --pGss~f~lSleD~l~~ 578 (830)
T PRK12904 563 --PGSSRFYLSLEDDLMR 578 (830)
T ss_pred --CCceeEEEEcCcHHHH
Confidence 8999998875554443
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=5.4e-16 Score=184.41 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=87.5
Q ss_pred cCCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccccc----
Q 003587 455 VRSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR---- 528 (809)
Q Consensus 455 ~~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~---- 528 (809)
+..|..+++|| ...++.++..|.+. |+.+.++||.+.+.+|..++++|+ .| .|+||||++|||+||-..
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~-gi~h~vLnak~~q~Ea~iia~Ag~--~G--~VtIATNmAGRGtDI~Lggn~~ 515 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKE-NIKHQVLNAKFHEKEAQIIAEAGR--PG--AVTIATNMAGRGTDIVLGGSLA 515 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHc-CCCeEeecCCCChHHHHHHHhCCC--CC--cEEEeccCccCCcceecCCchh
Confidence 34555555553 47888888888875 999999999999999999999998 67 499999999999998532
Q ss_pred -----------------------------------EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEE
Q 003587 529 -----------------------------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573 (809)
Q Consensus 529 -----------------------------------~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~ 573 (809)
+||-... +.|.--=.|-.|||||-|. .|.+-.|
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer---------hesrRID~QLrGRaGRQGD---PGss~f~ 583 (896)
T PRK13104 516 ADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSER---------HESRRIDNQLRGRAGRQGD---PGSSRFY 583 (896)
T ss_pred hhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeecc---------CchHHHHHHhccccccCCC---CCceEEE
Confidence 3444333 6677777899999999998 8999888
Q ss_pred ecccHHHH
Q 003587 574 NLDDLDYL 581 (809)
Q Consensus 574 ~~~d~~~l 581 (809)
++-++.-+
T Consensus 584 lSleD~l~ 591 (896)
T PRK13104 584 LSLEDNLM 591 (896)
T ss_pred EEcCcHHH
Confidence 87554444
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.68 E-value=4.8e-16 Score=187.70 Aligned_cols=266 Identities=16% Similarity=0.221 Sum_probs=156.9
Q ss_pred eEEEEcCCCChHHHHHHHHH----Hc----CCcEEEEcccHhHHHHHHHHHHhcCCceeeeec----ccccccccCc---
Q 003587 296 IIYHCGPTNSGKTYNALQRF----ME----AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTG----QEKKLVPFSN--- 360 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~~L----~~----~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g----~~~~~~~~~~--- 360 (809)
.+++.||||+|||.+++... .. ..++|++.|+|.++.++++++...+..-.+.++ ..........
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 295 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQD 295 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccc
Confidence 89999999999999944322 12 457899999999999999999975333222222 1111000000
Q ss_pred --c----------------eeeeeeecc----cCCc-------ccEEEEeccccccccc-chhHHHHH--Hhhccccccc
Q 003587 361 --H----------------IACTVEMVS----TDEM-------YDVAVIDEIQMMSDAC-RGYAWTRA--LLGLMADEIH 408 (809)
Q Consensus 361 --~----------------i~~tie~lt----~~rl-------v~~vVIDEAH~i~d~~-~g~~~~~i--ll~l~~~~i~ 408 (809)
. +.++...+. ..+. .+++|+||+|.+.+.. ++....-+ +..+... .
T Consensus 296 ~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~--i 373 (733)
T COG1203 296 ILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVP--V 373 (733)
T ss_pred cceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCC--E
Confidence 0 111111111 1111 5889999999998752 22221111 1111122 2
Q ss_pred ccCCchHHHH----HHHHhhhcCCceEE---------eeccccchhhHhHH---HHH-HHHHhcCCC--CEEEEechhHH
Q 003587 409 LCGDPSVLDV----VRKICSETGDELHE---------QHYERFKPLVVEAK---TLL-GDLRNVRSG--DCVVAFSRREI 469 (809)
Q Consensus 409 l~~s~~~~~l----i~~l~~~~~~~~~~---------~~~~r~~~l~~~~k---~ll-~~l~~~~~g--~~II~fsrk~~ 469 (809)
++.++|.... +............. ....+......... ... ........+ ..||+.|...|
T Consensus 374 ll~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~A 453 (733)
T COG1203 374 LLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRA 453 (733)
T ss_pred EEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHH
Confidence 2334443222 22222111111110 00111111111111 011 111222222 34555578999
Q ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhc--CCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCC
Q 003587 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND--QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547 (809)
Q Consensus 470 ~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~--~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s 547 (809)
.+++..|... +..+..+||.+...+|.+.++..+. ..+...|+|||++++.|+|++.+.+|-- +.+
T Consensus 454 ie~Y~~Lk~~-~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mITe-----------~aP 521 (733)
T COG1203 454 IELYEKLKEK-GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLITE-----------LAP 521 (733)
T ss_pred HHHHHHHHhc-CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeeec-----------CCC
Confidence 9999999885 3379999999999999998886542 2577899999999999999999988865 668
Q ss_pred HhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 548 GSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 548 ~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+.+.+||+||++|.|. ...|.++.+...
T Consensus 522 idSLIQR~GRv~R~g~-~~~~~~~v~~~~ 549 (733)
T COG1203 522 IDSLIQRAGRVNRHGK-KENGKIYVYNDE 549 (733)
T ss_pred HHHHHHHHHHHhhccc-ccCCceeEeecc
Confidence 9999999999999993 126888887653
No 107
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.64 E-value=6.6e-15 Score=170.98 Aligned_cols=99 Identities=27% Similarity=0.333 Sum_probs=80.6
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCC
Q 003587 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562 (809)
Q Consensus 483 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G 562 (809)
.+.++|+||....|..+.-.|+ .|...||+||..++-|||.|++.|++.+-+- ..++-.|.|++|||||.|
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR--~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsL-------QL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFR--QGHLQVLFATETLSLGINMPCRTVVFAGDSL-------QLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cccccccccchHHHHHHHHHhh--cCceEEEEEeeehhcccCCCceeEEEecccc-------ccCchhHHhhhccccccc
Confidence 5788999999999999999999 8999999999999999999999999987422 568889999999999999
Q ss_pred CCCCceEEEEEecccHHHHHHHHcCCchHH
Q 003587 563 SIYPDGLTTTLNLDDLDYLIECLKQPFEVV 592 (809)
Q Consensus 563 ~~~~~G~~i~~~~~d~~~l~~~l~~~~~~~ 592 (809)
- ...|.++.+-- -...+.+++....+++
T Consensus 1035 F-D~lGnV~Fmgi-P~~kv~rLlts~L~di 1062 (1330)
T KOG0949|consen 1035 F-DTLGNVVFMGI-PRQKVQRLLTSLLPDI 1062 (1330)
T ss_pred c-ccccceEEEeC-cHHHHHHHHHHhhhcc
Confidence 6 34788876643 3345555554444433
No 108
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=3.5e-14 Score=168.81 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=78.4
Q ss_pred CCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc----cc-
Q 003587 456 RSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN----IR- 528 (809)
Q Consensus 456 ~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip----V~- 528 (809)
..|..|++-| -...+.++..|.+. |+...++++.-...+-.-+.++ ...-.|.|||+.+|||-||- |.
T Consensus 566 ~~grPvLigt~si~~se~ls~~L~~~-gi~h~vLNak~~~~Ea~iia~A----G~~g~VTIATNmAGRGTDIkl~~~v~~ 640 (970)
T PRK12899 566 RKGNPILIGTESVEVSEKLSRILRQN-RIEHTVLNAKNHAQEAEIIAGA----GKLGAVTVATNMAGRGTDIKLDEEAVA 640 (970)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHc-CCcceecccchhhhHHHHHHhc----CCCCcEEEeeccccCCcccccCchHHh
Confidence 4455444443 46777888888765 8888888886333322222221 22357999999999999983 33
Q ss_pred ----EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHH
Q 003587 529 ----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 529 ----~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~ 582 (809)
+||-... |.|.---.|-.|||||-|. .|.+-.|++-++.-++
T Consensus 641 ~GGLhVIgTer---------~es~Rid~Ql~GRagRQGd---pGss~f~lSlEDdL~~ 686 (970)
T PRK12899 641 VGGLYVIGTSR---------HQSRRIDRQLRGRCARLGD---PGAAKFFLSFEDRLMR 686 (970)
T ss_pred cCCcEEEeecc---------CchHHHHHHHhcccccCCC---CCceeEEEEcchHHHH
Confidence 7777766 8899999999999999999 8999999876655543
No 109
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=2.8e-15 Score=129.62 Aligned_cols=75 Identities=35% Similarity=0.594 Sum_probs=71.1
Q ss_pred HHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHH
Q 003587 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQI 554 (809)
Q Consensus 476 L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr 554 (809)
|.. .++.+..+||++++++|..+++.|+ ++...|||||+++++|||+| +++||++++ |.+..+|.|+
T Consensus 3 L~~-~~~~~~~i~~~~~~~~r~~~~~~f~--~~~~~vli~t~~~~~Gid~~~~~~vi~~~~---------~~~~~~~~Q~ 70 (78)
T PF00271_consen 3 LEK-KGIKVAIIHGDMSQKERQEILKKFN--SGEIRVLIATDILGEGIDLPDASHVIFYDP---------PWSPEEYIQR 70 (78)
T ss_dssp HHH-TTSSEEEESTTSHHHHHHHHHHHHH--TTSSSEEEESCGGTTSSTSTTESEEEESSS---------ESSHHHHHHH
T ss_pred hHH-CCCcEEEEECCCCHHHHHHHHHHhh--ccCceEEEeecccccccccccccccccccc---------CCCHHHHHHH
Confidence 444 5999999999999999999999999 78899999999999999998 999999999 8999999999
Q ss_pred HcccCCCC
Q 003587 555 AGRAGRRG 562 (809)
Q Consensus 555 ~GRAGR~G 562 (809)
+||+||.|
T Consensus 71 ~GR~~R~g 78 (78)
T PF00271_consen 71 IGRAGRIG 78 (78)
T ss_dssp HTTSSTTT
T ss_pred hhcCCCCC
Confidence 99999987
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=8e-14 Score=165.65 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=88.0
Q ss_pred CCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccccc-----
Q 003587 456 RSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR----- 528 (809)
Q Consensus 456 ~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~----- 528 (809)
..|..|+++| ...++.++..|.+. |+.+.++||.+++.+|..+++.|+ .|. |+||||++|||+||-..
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~-gi~~~vLnak~~~~Ea~ii~~Ag~--~G~--VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKE-KIPHEVLNAKFHEREAEIVAQAGR--TGA--VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHC-CCCeEeccCcccHHHHHHHHhCCC--CCc--EEEecCCcCCCcceecCCchHH
Confidence 4566666664 47788888888775 999999999999999999999998 676 99999999999998532
Q ss_pred ---------------------------------EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 529 ---------------------------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 529 ---------------------------------~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
+||-... +.|.--=.|-.|||||-|. .|.+-.|++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer---------heSrRID~QLrGRaGRQGD---PGss~f~lS 589 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER---------HESRRIDNQLRGRAGRQGD---AGSSRFYLS 589 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc---------CchHHHHhhhhcccccCCC---CCceeEEEE
Confidence 4555544 6677777899999999998 899998887
Q ss_pred ccHHHH
Q 003587 576 DDLDYL 581 (809)
Q Consensus 576 ~d~~~l 581 (809)
-++.-+
T Consensus 590 lED~L~ 595 (908)
T PRK13107 590 MEDSLM 595 (908)
T ss_pred eCcHHH
Confidence 554443
No 111
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.58 E-value=1.5e-13 Score=168.21 Aligned_cols=110 Identities=23% Similarity=0.259 Sum_probs=87.9
Q ss_pred CCCEEEEech--hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCC-CCeEEEEeccccccccccc-ccEEEE
Q 003587 457 SGDCVVAFSR--REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD-NEFDVLVASDAVGMGLNLN-IRRVVF 532 (809)
Q Consensus 457 ~g~~II~fsr--k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~-g~~~ILVATdal~~GIDip-V~~VI~ 532 (809)
.|..||+||. ....-+...|.. .|+.++.+||+++.++|..+++.|+.+. +..-+|++|.+.|.|||+. +++||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~-~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY-RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH-cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 4567777764 344445555544 5899999999999999999999998522 3457899999999999996 999999
Q ss_pred cCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 533 ~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
||+ |.++....|++||+-|.|.. ..-.+|.|++.+
T Consensus 565 yD~---------dWNP~~d~QAidRaHRIGQk-k~V~VyRLIt~g 599 (1033)
T PLN03142 565 YDS---------DWNPQVDLQAQDRAHRIGQK-KEVQVFRFCTEY 599 (1033)
T ss_pred eCC---------CCChHHHHHHHHHhhhcCCC-ceEEEEEEEeCC
Confidence 999 88999999999999999983 234566777543
No 112
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.56 E-value=2e-13 Score=160.57 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=150.8
Q ss_pred HhhCCCeEEEEcCCCChHHHH-HHHHH---HcCCcEEEEcccHhHHHHHHHHHHhcCCcee-----e-eeccccccc---
Q 003587 290 RVMKRKIIYHCGPTNSGKTYN-ALQRF---MEAKKGIYCSPLRLLAMEVFDKVNALGVYCS-----L-LTGQEKKLV--- 356 (809)
Q Consensus 290 ~~l~grdviv~apTGSGKTl~-~L~~L---~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~-----l-~~g~~~~~~--- 356 (809)
+++.|+..-++||||.|||+- .+.++ ..+++++||.||+.|+.|+++++.+++...+ + +++......
T Consensus 93 R~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee 172 (1187)
T COG1110 93 RLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEE 172 (1187)
T ss_pred HHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHH
Confidence 578999999999999999987 33333 2567899999999999999999998853332 2 233311110
Q ss_pred ------c-cCcceeeeeeecccC------CcccEEEEecccccccccchhHHHHHHhhcccccc----------------
Q 003587 357 ------P-FSNHIACTVEMVSTD------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEI---------------- 407 (809)
Q Consensus 357 ------~-~~~~i~~tie~lt~~------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i---------------- 407 (809)
. ....+++|...+... ..++++++|.+|.++-.+..-+-.-.++|++...+
T Consensus 173 ~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~ 252 (1187)
T COG1110 173 ALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGE 252 (1187)
T ss_pred HHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 1 122333443333221 12899999999999765433332223333332211
Q ss_pred --------------------------cccCCch------HHHHHHHHhhhc------CCceEEeeccccchhhHhHHHHH
Q 003587 408 --------------------------HLCGDPS------VLDVVRKICSET------GDELHEQHYERFKPLVVEAKTLL 449 (809)
Q Consensus 408 --------------------------~l~~s~~------~~~li~~l~~~~------~~~~~~~~~~r~~~l~~~~k~ll 449 (809)
.+..+++ ...+.+.+..-. ....++..|... .....++
T Consensus 253 ~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y~~~----~~~e~~~ 328 (1187)
T COG1110 253 KRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYVES----ESLEKVV 328 (1187)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeeeeccC----ccHHHHH
Confidence 0111111 112222222110 011122222211 1123566
Q ss_pred HHHHhcCCCCEEEEec---hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEec----cccccc
Q 003587 450 GDLRNVRSGDCVVAFS---RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS----DAVGMG 522 (809)
Q Consensus 450 ~~l~~~~~g~~II~fs---rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVAT----dal~~G 522 (809)
+.++....|..|++-. +..+++++..|+.. |+++..+|+.- ...++.|. .|+++|||+. .++-||
T Consensus 329 elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~-Gi~a~~~~a~~-----~~~le~F~--~GeidvLVGvAsyYG~lVRG 400 (1187)
T COG1110 329 ELVKKLGDGGLIFVPIDYGREKAEELAEYLRSH-GINAELIHAEK-----EEALEDFE--EGEVDVLVGVASYYGVLVRG 400 (1187)
T ss_pred HHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhc-CceEEEeeccc-----hhhhhhhc--cCceeEEEEecccccceeec
Confidence 7777788877666665 57899999999986 99999999853 57899998 8999999986 689999
Q ss_pred cccc--ccEEEEcCCCCC
Q 003587 523 LNLN--IRRVVFYSLSKY 538 (809)
Q Consensus 523 IDip--V~~VI~~d~~K~ 538 (809)
||+| |+++|++|.||+
T Consensus 401 lDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 401 LDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred CCchhheeEEEEecCCce
Confidence 9999 999999999964
No 113
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.54 E-value=3.7e-14 Score=144.98 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=106.5
Q ss_pred HHHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHHHHHHHH----c-----CCcEEEEcccHhHHHHHHHHH
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----E-----AKKGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~~L~~L~----~-----~~~~LvlsPtR~La~Q~~~~l 338 (809)
+.+.+...|++.|++ ...+..+++|+++++++|||+|||++++.+++ . ++++||++|+++|+.|+.+.+
T Consensus 10 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~ 89 (203)
T cd00268 10 LLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVA 89 (203)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHH
Confidence 345677789998887 34555678899999999999999999655543 2 347899999999999999998
Q ss_pred Hhc----CCceeeeecccccc-----cc-cCcceeeeeeec----ccC----CcccEEEEecccccccccchhHHHHHHh
Q 003587 339 NAL----GVYCSLLTGQEKKL-----VP-FSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTRALL 400 (809)
Q Consensus 339 ~~~----g~~~~l~~g~~~~~-----~~-~~~~i~~tie~l----t~~----rlv~~vVIDEAH~i~d~~~g~~~~~ill 400 (809)
..+ ++.+..++|..... .. ....+++|++.+ ... ..++++|+||||++.+.+++.....++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~ 169 (203)
T cd00268 90 RKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILK 169 (203)
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHH
Confidence 877 34445555533211 11 234556665422 111 1279999999999998888888887777
Q ss_pred hcccccccccCCchHHHHHHHHh
Q 003587 401 GLMADEIHLCGDPSVLDVVRKIC 423 (809)
Q Consensus 401 ~l~~~~i~l~~s~~~~~li~~l~ 423 (809)
.+....+.++.+++..+.+..+.
T Consensus 170 ~l~~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 170 LLPKDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred hCCcccEEEEEeccCCHHHHHHH
Confidence 77766666666665544444433
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.52 E-value=1.5e-12 Score=144.32 Aligned_cols=129 Identities=19% Similarity=0.233 Sum_probs=104.4
Q ss_pred HHHHHHHh-cCCCCEEEEe--chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRN-VRSGDCVVAF--SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~-~~~g~~II~f--srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.|+..+.. ...+..+++. |++.++++..+|.+. |+++.++|++...-+|.++++..+ .|.++|||.-+.+-.||
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~-gikv~YlHSdidTlER~eIirdLR--~G~~DvLVGINLLREGL 510 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL-GIKVRYLHSDIDTLERVEIIRDLR--LGEFDVLVGINLLREGL 510 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc-CceEEeeeccchHHHHHHHHHHHh--cCCccEEEeehhhhccC
Confidence 45555433 3344444443 689999999999985 999999999999999999999999 89999999999999999
Q ss_pred ccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHc
Q 003587 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586 (809)
Q Consensus 524 Dip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~ 586 (809)
|+| |..|...|..| .|. ..|-.+.+|.+|||.|.-. |.++.+...-...+.++|.
T Consensus 511 DiPEVsLVAIlDADK-eGF---LRse~SLIQtIGRAARN~~----GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 511 DLPEVSLVAILDADK-EGF---LRSERSLIQTIGRAARNVN----GKVILYADKITDSMQKAID 566 (663)
T ss_pred CCcceeEEEEeecCc-ccc---ccccchHHHHHHHHhhccC----CeEEEEchhhhHHHHHHHH
Confidence 999 99999988755 111 6688899999999999886 9999887654445555543
No 115
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.48 E-value=2.9e-13 Score=127.51 Aligned_cols=112 Identities=29% Similarity=0.424 Sum_probs=95.5
Q ss_pred HHHHHHHhcC--CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRNVR--SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~~~--~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.+...+.+.. .+.++||+ +...++.++..|.+ .+..+.++||++++.+|..+++.|+ ++...||++|.++++|+
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~--~~~~~ili~t~~~~~G~ 92 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-PGIKVAALHGDGSQEEREEVLKDFR--EGEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHHH--cCCCcEEEEcChhhcCc
Confidence 3444444432 45666666 45778889988887 4889999999999999999999999 78899999999999999
Q ss_pred ccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEE
Q 003587 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573 (809)
Q Consensus 524 Dip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~ 573 (809)
|+| +++||++++ |.+...+.|++||+||.|. .|.|+.+
T Consensus 93 d~~~~~~vi~~~~---------~~~~~~~~Q~~GR~~R~~~---~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDL---------PWSPSSYLQRIGRAGRAGQ---KGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCC---------CCCHHHheecccccccCCC---CceEEeC
Confidence 998 999999999 8899999999999999998 7888754
No 116
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.48 E-value=4.1e-13 Score=160.33 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=102.7
Q ss_pred HHHHHHHhc-CCCC-EEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRNV-RSGD-CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~~-~~g~-~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.++..+... ..+. ++||+ +++.++.++..|.+. |+.+..+||++++.+|..+++.|+ .|++.|||||+++++|+
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-gi~~~~~h~~~~~~~R~~~l~~f~--~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-GIKVRYLHSDIDTLERVEIIRDLR--LGEFDVLVGINLLREGL 510 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-ceeEEEEECCCCHHHHHHHHHHHH--cCCceEEEEeCHHhCCc
Confidence 444445332 3344 44544 468899999999875 999999999999999999999999 89999999999999999
Q ss_pred ccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHH
Q 003587 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (809)
Q Consensus 524 Dip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l 585 (809)
|+| +++||++|...|. .|.+..+|+||+|||||. . .|.|++|++.....+.+.+
T Consensus 511 dlp~v~lVii~d~eifG----~~~~~~~yiqr~GR~gR~-~---~G~~i~~~~~~~~~~~~~~ 565 (652)
T PRK05298 511 DIPEVSLVAILDADKEG----FLRSERSLIQTIGRAARN-V---NGKVILYADKITDSMQKAI 565 (652)
T ss_pred cccCCcEEEEeCCcccc----cCCCHHHHHHHhccccCC-C---CCEEEEEecCCCHHHHHHH
Confidence 998 9999999974431 167999999999999996 4 5999999975544444443
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.47 E-value=3e-13 Score=160.62 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=105.7
Q ss_pred HHHHHHHhc-CCCC-EEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRNV-RSGD-CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~~-~~g~-~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.++..+... ..+. ++||+ +++.++.++..|.+. |+.+..+||++++.+|..+++.|+ .|++.|||||+++++|+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-gi~~~~lh~~~~~~eR~~~l~~fr--~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-GIKVRYLHSEIDTLERVEIIRDLR--LGEFDVLVGINLLREGL 506 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-ccceeeeeCCCCHHHHHHHHHHHh--cCCceEEEEcChhcCCe
Confidence 455555432 3344 44444 468899999999875 899999999999999999999999 89999999999999999
Q ss_pred ccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHHHHcC
Q 003587 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (809)
Q Consensus 524 Dip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~~l~~ 587 (809)
|+| +++||++|..+| | .|.+..+|+||+|||||.. .|.|++|++.....+.+.+..
T Consensus 507 DiP~v~lVvi~Dadif-G---~p~~~~~~iqriGRagR~~----~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 507 DLPEVSLVAILDADKE-G---FLRSERSLIQTIGRAARNV----NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred eeCCCcEEEEeCcccc-c---CCCCHHHHHHHhcCCCCCC----CCEEEEEEcCCCHHHHHHHHH
Confidence 998 999999995332 1 2889999999999999985 499999998766666665543
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.45 E-value=3.4e-12 Score=152.99 Aligned_cols=277 Identities=17% Similarity=0.154 Sum_probs=155.3
Q ss_pred CCeEEEEcCCCChHHHHHHH---HH---HcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccc--c-cc--cccCcce
Q 003587 294 RKIIYHCGPTNSGKTYNALQ---RF---MEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE--K-KL--VPFSNHI 362 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~---~L---~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~--~-~~--~~~~~~i 362 (809)
++..++++|||||||+.++. .+ ...+++|+|+|+++|..|+.+.+..++..+....+.. . +. ......+
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCAERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCCcccCCHHHHHHHHhCCCCCEE
Confidence 35799999999999998432 22 2456889999999999999999999875422111110 0 10 1123456
Q ss_pred eeeeeeccc--C---------CcccEEEEecccccccccchhHHHHHHhhcc-cccccccCCchHHHHH---HHHh----
Q 003587 363 ACTVEMVST--D---------EMYDVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIHLCGDPSVLDVV---RKIC---- 423 (809)
Q Consensus 363 ~~tie~lt~--~---------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~-~~~i~l~~s~~~~~li---~~l~---- 423 (809)
++|+..+.. . +.-.+||+||||+.....|...++. .++ +..+.++++|...... ..+.
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~---~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg 419 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKK---ALKNASFFGFTGTPIFKKDRDTSLTFAYVFG 419 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHh---hCCCCcEEEEeCCCcccccccccccccCCCC
Confidence 667655432 0 0012899999999864333333332 222 2233444554321000 0000
Q ss_pred ---------hhcCCceEEe--eccccchhh----------------------------Hh-------------------H
Q 003587 424 ---------SETGDELHEQ--HYERFKPLV----------------------------VE-------------------A 445 (809)
Q Consensus 424 ---------~~~~~~~~~~--~~~r~~~l~----------------------------~~-------------------~ 445 (809)
....+..... ++.+..... +. .
T Consensus 420 ~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia 499 (667)
T TIGR00348 420 RYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIA 499 (667)
T ss_pred CeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHH
Confidence 0000000000 000000000 00 0
Q ss_pred HHHHHHHHh---cCCCCEEEEe-chhHHHHHHHHHHHhc----CCeEEEEeCCCCHH---------------------HH
Q 003587 446 KTLLGDLRN---VRSGDCVVAF-SRREIFEVKMAIEKHT----NHHCCVIYGALPPE---------------------TR 496 (809)
Q Consensus 446 k~ll~~l~~---~~~g~~II~f-srk~~~~l~~~L~~~~----g~~v~~lhg~l~~~---------------------~R 496 (809)
+.+++.+.. ...++.+||+ ++..|..++..|.+.. +..++++++..+.+ ..
T Consensus 500 ~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (667)
T TIGR00348 500 KDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIY 579 (667)
T ss_pred HHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHH
Confidence 012222211 1235666655 6788888888876532 24556666654332 22
Q ss_pred HHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCC-CCCCCCceEEEEEe
Q 003587 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPDGLTTTLN 574 (809)
Q Consensus 497 ~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR-~G~~~~~G~~i~~~ 574 (809)
..++++|++ .+..+|||.+|.+..|+|.| +..++..- |..-..++|.+||+-| .....+.|.++-|+
T Consensus 580 ~~~~~~Fk~-~~~~~ilIVvdmllTGFDaP~l~tLyldK----------plk~h~LlQai~R~nR~~~~~K~~g~IvDy~ 648 (667)
T TIGR00348 580 YKDLERFKK-EENPKLLIVVDMLLTGFDAPILNTLYLDK----------PLKYHGLLQAIARTNRIDGKDKTFGLIVDYR 648 (667)
T ss_pred HHHHHHhcC-CCCceEEEEEcccccccCCCccceEEEec----------cccccHHHHHHHHhccccCCCCCCEEEEECc
Confidence 468889984 47899999999999999999 77666655 5444568999999999 45444578888887
Q ss_pred cccHHHHHHHH
Q 003587 575 LDDLDYLIECL 585 (809)
Q Consensus 575 ~~d~~~l~~~l 585 (809)
.. .+.+.+++
T Consensus 649 g~-~~~l~~Al 658 (667)
T TIGR00348 649 GL-EKSLIDAL 658 (667)
T ss_pred Ch-HHHHHHHH
Confidence 53 23444433
No 119
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.42 E-value=3.6e-12 Score=150.76 Aligned_cols=289 Identities=17% Similarity=0.151 Sum_probs=166.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHh-cCCceeeeecccccccc---------cCc
Q 003587 295 KIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVP---------FSN 360 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~---------~~~ 360 (809)
+..++-|.||||||.+|++.+. .++++|+++|-++|--|+.++|+. +|.++.++++....... ...
T Consensus 218 ~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~ 297 (730)
T COG1198 218 APFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA 297 (730)
T ss_pred cceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc
Confidence 5688999999999999877653 677999999999999999999986 58788777766543222 112
Q ss_pred ce-eee-eeecccCCcccEEEEecccccccc---cchhHHHHH-H-hhcccccccccCC--chHHHHHHHHhhhcCCceE
Q 003587 361 HI-ACT-VEMVSTDEMYDVAVIDEIQMMSDA---CRGYAWTRA-L-LGLMADEIHLCGD--PSVLDVVRKICSETGDELH 431 (809)
Q Consensus 361 ~i-~~t-ie~lt~~rlv~~vVIDEAH~i~d~---~~g~~~~~i-l-l~l~~~~i~l~~s--~~~~~li~~l~~~~~~~~~ 431 (809)
.+ +.| --+++|-..+.+|||||-|.-+-. ++...-+.+ + .+-......++++ |+.................
T Consensus 298 ~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L 377 (730)
T COG1198 298 RVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRL 377 (730)
T ss_pred eEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEc
Confidence 22 222 356677777999999999987522 222222221 1 1111111223333 3322222111000000000
Q ss_pred Eeecc------------ccchhhH---hHHHHHHHHHh-cCCC-CEEEEechh---------------------------
Q 003587 432 EQHYE------------RFKPLVV---EAKTLLGDLRN-VRSG-DCVVAFSRR--------------------------- 467 (809)
Q Consensus 432 ~~~~~------------r~~~l~~---~~k~ll~~l~~-~~~g-~~II~fsrk--------------------------- 467 (809)
...+. +..+... -...+++.+.+ ...| ..++|++|+
T Consensus 378 ~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H 457 (730)
T COG1198 378 TNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLH 457 (730)
T ss_pred cccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEe
Confidence 00010 0000000 01223333311 1111 122222222
Q ss_pred ----------------------------------HHHHHHHHHHHh-cCCeEEEEeCCCCHHH--HHHHHHHhhcCCCCe
Q 003587 468 ----------------------------------EIFEVKMAIEKH-TNHHCCVIYGALPPET--RRQQANLFNDQDNEF 510 (809)
Q Consensus 468 ----------------------------------~~~~l~~~L~~~-~g~~v~~lhg~l~~~~--R~~~~~~F~~~~g~~ 510 (809)
.++++.+.|.+. .+.++..+-++..... -+..+..|. +|+.
T Consensus 458 ~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~--~ge~ 535 (730)
T COG1198 458 KATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA--NGEA 535 (730)
T ss_pred cCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh--CCCC
Confidence 156667776663 3778888888865433 356788998 8999
Q ss_pred EEEEeccccccccccc-ccEEEE--cCCCCCCCC-CcccCCHhHHHHHHcccCCCCCCCCceEEEE-EecccHHHHHHHH
Q 003587 511 DVLVASDAVGMGLNLN-IRRVVF--YSLSKYNGD-KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT-LNLDDLDYLIECL 585 (809)
Q Consensus 511 ~ILVATdal~~GIDip-V~~VI~--~d~~K~dg~-~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~-~~~~d~~~l~~~l 585 (809)
+|||.|..++.|.|+| |..|.. .|..-+.++ +..-.+...+.|-+|||||.+. .|.++. -+.++...+...+
T Consensus 536 dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~---~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 536 DILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK---PGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred CeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC---CCeEEEEeCCCCcHHHHHHH
Confidence 9999999999999998 887754 443323322 2223456778999999999977 565554 3456666666555
Q ss_pred cCC
Q 003587 586 KQP 588 (809)
Q Consensus 586 ~~~ 588 (809)
.+.
T Consensus 613 ~~d 615 (730)
T COG1198 613 RGD 615 (730)
T ss_pred hcC
Confidence 543
No 120
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.42 E-value=6.8e-13 Score=114.35 Aligned_cols=80 Identities=33% Similarity=0.510 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHh
Q 003587 471 EVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGS 549 (809)
Q Consensus 471 ~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~ 549 (809)
.++..|.+. ++.+..+||++++++|..+++.|+ ++...|||+|+++++|+|+| ++.||++++ |.+..
T Consensus 2 ~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~---------~~~~~ 69 (82)
T smart00490 2 ELAELLKEL-GIKVARLHGGLSQEEREEILEKFN--NGKIKVLVATDVAERGLDLPGVDLVIIYDL---------PWSPA 69 (82)
T ss_pred HHHHHHHHC-CCeEEEEECCCCHHHHHHHHHHHH--cCCCeEEEECChhhCCcChhcCCEEEEeCC---------CCCHH
Confidence 355666664 899999999999999999999999 78889999999999999998 999999999 88999
Q ss_pred HHHHHHcccCCCC
Q 003587 550 QVKQIAGRAGRRG 562 (809)
Q Consensus 550 ~y~Qr~GRAGR~G 562 (809)
.|.|++||+||.|
T Consensus 70 ~~~Q~~gR~~R~g 82 (82)
T smart00490 70 SYIQRIGRAGRAG 82 (82)
T ss_pred HHHHhhcccccCC
Confidence 9999999999976
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.37 E-value=1e-11 Score=144.64 Aligned_cols=255 Identities=17% Similarity=0.215 Sum_probs=146.9
Q ss_pred CeEEEEcCCCChHHHHHHH---HHHc---CCcEEEEcccHhHHHHHHHHHHhc---CCceeeeecccccccccCcceeee
Q 003587 295 KIIYHCGPTNSGKTYNALQ---RFME---AKKGIYCSPLRLLAMEVFDKVNAL---GVYCSLLTGQEKKLVPFSNHIACT 365 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~---~L~~---~~~~LvlsPtR~La~Q~~~~l~~~---g~~~~l~~g~~~~~~~~~~~i~~t 365 (809)
+-++++|.||+|||..++. .|++ .+++|+|+-+++|..|.+..+..+ +..+..+.+..... ......+|
T Consensus 186 ~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~~~--s~~i~lsT 263 (875)
T COG4096 186 NRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGDT--SSEIYLST 263 (875)
T ss_pred ceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccCCc--ceeEEEee
Confidence 3499999999999988543 3443 358999999999999999888876 44455544433222 11122222
Q ss_pred e--------------eecccCCcccEEEEecccccccccchhHHH---HHHhhccccc--------cccc-CCchHH-HH
Q 003587 366 V--------------EMVSTDEMYDVAVIDEIQMMSDACRGYAWT---RALLGLMADE--------IHLC-GDPSVL-DV 418 (809)
Q Consensus 366 i--------------e~lt~~rlv~~vVIDEAH~i~d~~~g~~~~---~ill~l~~~~--------i~l~-~s~~~~-~l 418 (809)
+ .-++++. +++|||||||+=.-..|...+. .+..++.++. ..++ +.|+.. .+
T Consensus 264 yqt~~~~~~~~~~~~~~f~~g~-FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~Ysl 342 (875)
T COG4096 264 YQTMTGRIEQKEDEYRRFGPGF-FDLIVIDEAHRGIYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFNGEPTYAYSL 342 (875)
T ss_pred hHHHHhhhhccccccccCCCCc-eeEEEechhhhhHHhhhHHHHHHHHHHHHhhccCcccccccccccccCCCcceeecH
Confidence 2 1223333 8999999999976443432221 2223333221 1123 333311 00
Q ss_pred HHHHhhhc--CCce------------------------------EEeecc-----ccchhhHhH----HHHHHHHHh--c
Q 003587 419 VRKICSET--GDEL------------------------------HEQHYE-----RFKPLVVEA----KTLLGDLRN--V 455 (809)
Q Consensus 419 i~~l~~~~--~~~~------------------------------~~~~~~-----r~~~l~~~~----k~ll~~l~~--~ 455 (809)
-+.+.... +... -.+.|+ +........ +.+.+.+.. .
T Consensus 343 eeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~ 422 (875)
T COG4096 343 EEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGAT 422 (875)
T ss_pred HHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccC
Confidence 00000000 0000 001111 111000011 123333333 1
Q ss_pred C--CCCEEEEe-chhHHHHHHHHHHHh----cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-c
Q 003587 456 R--SGDCVVAF-SRREIFEVKMAIEKH----TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-I 527 (809)
Q Consensus 456 ~--~g~~II~f-srk~~~~l~~~L~~~----~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V 527 (809)
. .++.|||+ +...++.+...+.+. .|.-|..+.|+-.+.. ..+..|...+.--+|.|+.+.+..|||+| |
T Consensus 423 g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev 500 (875)
T COG4096 423 GDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEV 500 (875)
T ss_pred CCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchhe
Confidence 1 34566666 457888888888763 2456788888765554 34566653345568999999999999998 9
Q ss_pred cEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCC
Q 003587 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (809)
Q Consensus 528 ~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (809)
..+|++.. -.|..-|.|++||+-|.-.
T Consensus 501 ~nlVF~r~---------VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 501 VNLVFDRK---------VRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred eeeeehhh---------hhhHHHHHHHhcCccccCc
Confidence 99999887 4599999999999999543
No 122
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.34 E-value=7.2e-13 Score=130.87 Aligned_cols=114 Identities=25% Similarity=0.290 Sum_probs=80.7
Q ss_pred HHhhCCCeEEEEcCCCChHHHHHHHHHH----cCC--cEEEEcccHhHHHHHHHHHHhcCCc----eeeeecccccc---
Q 003587 289 ARVMKRKIIYHCGPTNSGKTYNALQRFM----EAK--KGIYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEKKL--- 355 (809)
Q Consensus 289 ~~~l~grdviv~apTGSGKTl~~L~~L~----~~~--~~LvlsPtR~La~Q~~~~l~~~g~~----~~l~~g~~~~~--- 355 (809)
..+++|+++++.||||+|||++++.+++ +++ .+||++|+++|+.|+++.+..++.. +..+.|.....
T Consensus 9 ~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (169)
T PF00270_consen 9 EAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQ 88 (169)
T ss_dssp HHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHH
T ss_pred HHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccc
Confidence 3357899999999999999999654443 333 8899999999999999999987543 44455543211
Q ss_pred ---c-ccCcceeeeeeec----ccC----CcccEEEEecccccccccchhHHHHHHhhc
Q 003587 356 ---V-PFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (809)
Q Consensus 356 ---~-~~~~~i~~tie~l----t~~----rlv~~vVIDEAH~i~d~~~g~~~~~ill~l 402 (809)
. .....+++|++.+ ... ..++++||||+|++.+..++..+..++..+
T Consensus 89 ~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 89 REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 1 1245566776432 111 118999999999999876777777666555
No 123
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=99.33 E-value=1.9e-12 Score=101.74 Aligned_cols=49 Identities=39% Similarity=0.693 Sum_probs=44.8
Q ss_pred HHHHHhhhhhhhHhHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 003587 708 LLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNA 757 (809)
Q Consensus 708 l~~le~~h~~l~~y~wls~rf~~~~f~~~~~~~~~~~~~~~~i~~~l~~~ 757 (809)
|..||..|+++++|+|||+||| ++|||.+.|.+++..+++.|++.|.++
T Consensus 1 L~~LE~~hk~l~lYlWLs~Rfp-~~F~d~e~a~~~k~~~~~~I~~~L~~~ 49 (49)
T PF12513_consen 1 LQRLESLHKVLDLYLWLSYRFP-DVFPDRELAEELKKRVEEKIEEGLERI 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-T-TTSTTHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHcc-cccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4579999999999999999998 899999999999999999999999763
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=2.3e-10 Score=133.77 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=81.8
Q ss_pred cCCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccccc----
Q 003587 455 VRSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR---- 528 (809)
Q Consensus 455 ~~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~---- 528 (809)
+..|..|++.| -...+.++..|.+. |++..++++.-...+= .++..- ...-.|-|||+.+|||-||...
T Consensus 424 ~~~GrPVLVgt~sI~~SE~ls~~L~~~-gI~h~vLNAk~~~~EA-~IIa~A---G~~gaVTIATNMAGRGTDIkLg~~~~ 498 (764)
T PRK12326 424 HETGQPVLVGTHDVAESEELAERLRAA-GVPAVVLNAKNDAEEA-RIIAEA---GKYGAVTVSTQMAGRGTDIRLGGSDE 498 (764)
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHhC-CCcceeeccCchHhHH-HHHHhc---CCCCcEEEEecCCCCccCeecCCCcc
Confidence 35566666554 47888888888875 8999999987443332 222222 2245799999999999998643
Q ss_pred ------------EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 529 ------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 529 ------------~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
+||-... +.|.--=.|-.|||||-|. .|.+-.|++-++.-+..
T Consensus 499 ~~~~~V~~~GGLhVIgTer---------heSrRID~QLrGRaGRQGD---pGss~f~lSleDdl~~~ 553 (764)
T PRK12326 499 ADRDRVAELGGLHVIGTGR---------HRSERLDNQLRGRAGRQGD---PGSSVFFVSLEDDVVAA 553 (764)
T ss_pred cchHHHHHcCCcEEEeccC---------CchHHHHHHHhcccccCCC---CCceeEEEEcchhHHHh
Confidence 6776665 7788888999999999999 89999998766555543
No 125
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.22 E-value=3.1e-10 Score=135.63 Aligned_cols=290 Identities=19% Similarity=0.221 Sum_probs=181.8
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHc---CCcEEEEcccHhHHHHHHHHHHhc-----CCceeeeeccccccc---ccCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFME---AKKGIYCSPLRLLAMEVFDKVNAL-----GVYCSLLTGQEKKLV---PFSN 360 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~---~~~~LvlsPtR~La~Q~~~~l~~~-----g~~~~l~~g~~~~~~---~~~~ 360 (809)
-.+++|++.+|+|||||.|+-.+++. .++++|++|.-+.+..++..+.+. |..+..++|+..-+. ....
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~ 1236 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQ 1236 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcc
Confidence 35678999999999999998777764 347899999999999888777653 555566777665433 2345
Q ss_pred ceeeeeeeccc---CCcccEEEEecccccccccchhHHH------HHHhhcccccccccCCchHHHHHHHHhhhc-----
Q 003587 361 HIACTVEMVST---DEMYDVAVIDEIQMMSDACRGYAWT------RALLGLMADEIHLCGDPSVLDVVRKICSET----- 426 (809)
Q Consensus 361 ~i~~tie~lt~---~rlv~~vVIDEAH~i~d~~~g~~~~------~ill~l~~~~i~l~~s~~~~~li~~l~~~~----- 426 (809)
.+.+|++.... ...+++.|.||.|++.+ ..|.... .+-..+. +.+.+.+-.+....++.+....
T Consensus 1237 vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~-k~ir~v~ls~~lana~d~ig~s~~~v~ 1314 (1674)
T KOG0951|consen 1237 VIISTPEQWDLLQSIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLE-KKIRVVALSSSLANARDLIGASSSGVF 1314 (1674)
T ss_pred eEEechhHHHHHhhhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHH-hheeEEEeehhhccchhhcccccccee
Confidence 56677765433 33489999999999984 2343321 1111111 1122211111111112221111
Q ss_pred ---------CCceEEeeccccchh---hHhHHHHHHHHHhc--CCCCEEEEe-chhHHHHHHHHHHHh------------
Q 003587 427 ---------GDELHEQHYERFKPL---VVEAKTLLGDLRNV--RSGDCVVAF-SRREIFEVKMAIEKH------------ 479 (809)
Q Consensus 427 ---------~~~~~~~~~~r~~~l---~~~~k~ll~~l~~~--~~g~~II~f-srk~~~~l~~~L~~~------------ 479 (809)
+..+.++.+.-.... ....+..+..+.++ .+...+||. +|+.+..++..+...
T Consensus 1315 Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~ 1394 (1674)
T KOG0951|consen 1315 NFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSE 1394 (1674)
T ss_pred ecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHH
Confidence 112222332211000 00011222222221 223344444 677776665554210
Q ss_pred ---------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccccccEEEEcCCCCCCCC--CcccCCH
Q 003587 480 ---------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD--KIIPVPG 548 (809)
Q Consensus 480 ---------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~--~~~P~s~ 548 (809)
-..+..+=|-+|+.....-+...|. .|.+.|+|...- -+|+-.-...||..|..-|||. ...+.++
T Consensus 1395 ~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e--~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i 1471 (1674)
T KOG0951|consen 1395 LEECDETLRESLKHGVGHEGLSSNDQEIVQQLFE--AGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPI 1471 (1674)
T ss_pred HhcchHhhhhcccccccccccCcchHHHHHHHHh--cCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCch
Confidence 0122222388999999999999998 899999999877 8998888999999999999998 5889999
Q ss_pred hHHHHHHcccCCCCCCCCceEEEEEe-cccHHHHHHHHcCCchHH
Q 003587 549 SQVKQIAGRAGRRGSIYPDGLTTTLN-LDDLDYLIECLKQPFEVV 592 (809)
Q Consensus 549 ~~y~Qr~GRAGR~G~~~~~G~~i~~~-~~d~~~l~~~l~~~~~~~ 592 (809)
++..|+.|+|.|+|+ |+.+. .++..++++++.++.|-.
T Consensus 1472 ~~ll~m~G~a~~~~k------~vi~~~~~~k~yykkfl~e~lPve 1510 (1674)
T KOG0951|consen 1472 AELLQMVGLASGAGK------CVIMCHTPKKEYYKKFLYEPLPVE 1510 (1674)
T ss_pred hHHHHHhhhhcCCcc------EEEEecCchHHHHHHhccCcCchH
Confidence 999999999998554 66666 577888899998876543
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=1.7e-10 Score=138.12 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=96.0
Q ss_pred HHHHHHHhc-CCC-CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccc
Q 003587 447 TLLGDLRNV-RSG-DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (809)
Q Consensus 447 ~ll~~l~~~-~~g-~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GI 523 (809)
.++..+... ..| .++|++ |...++.++..|.+. |+.+.++|+ .+.+|+..+..|. .+...|+||||++|||+
T Consensus 586 Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~-gI~h~vLna--kq~~REa~Iia~A--G~~g~VtIATNMAGRGt 660 (1025)
T PRK12900 586 AIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK-RIAHNVLNA--KQHDREAEIVAEA--GQKGAVTIATNMAGRGT 660 (1025)
T ss_pred HHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc-CCCceeecC--CHHHhHHHHHHhc--CCCCeEEEeccCcCCCC
Confidence 455555332 334 445544 457888888888875 999999997 5889999999998 78899999999999999
Q ss_pred ccc----cc-----EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHHH
Q 003587 524 NLN----IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (809)
Q Consensus 524 Dip----V~-----~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~~ 583 (809)
||+ |. +||++.. |.|...|.|++|||||.|. .|.+.+|++.++.-++.
T Consensus 661 DIkl~~~V~~vGGL~VIgter---------hes~Rid~Ql~GRtGRqGd---pGsS~ffvSleD~Lmr~ 717 (1025)
T PRK12900 661 DIKLGEGVRELGGLFILGSER---------HESRRIDRQLRGRAGRQGD---PGESVFYVSLEDELMRL 717 (1025)
T ss_pred CcCCccchhhhCCceeeCCCC---------CchHHHHHHHhhhhhcCCC---CcceEEEechhHHHHHh
Confidence 996 43 3377776 8899999999999999999 89999999877655543
No 127
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.14 E-value=2.9e-09 Score=122.60 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=84.4
Q ss_pred CCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCC-CCeEEEEeccccccccccc-ccEEEE
Q 003587 456 RSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD-NEFDVLVASDAVGMGLNLN-IRRVVF 532 (809)
Q Consensus 456 ~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~-g~~~ILVATdal~~GIDip-V~~VI~ 532 (809)
..|..|++||+ ....++........++..+-+.|.++-++|..+++.|+.+. ...-.|++|-|.|-|||+- .+.||.
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl 564 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL 564 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE
Confidence 45778888886 44444444444445899999999999999999999999733 4677899999999999995 999999
Q ss_pred cCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 533 ~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
||- -.++..=.|-.-||-|-|.. ..=.||.|++++
T Consensus 565 yDS---------DWNPQ~DLQAmDRaHRIGQ~-K~V~V~RLiten 599 (971)
T KOG0385|consen 565 YDS---------DWNPQVDLQAMDRAHRIGQK-KPVVVYRLITEN 599 (971)
T ss_pred ecC---------CCCchhhhHHHHHHHhhCCc-CceEEEEEeccc
Confidence 996 33555555666666666652 246788888764
No 128
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.12 E-value=1.2e-09 Score=120.22 Aligned_cols=261 Identities=20% Similarity=0.201 Sum_probs=162.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHH-cCCcEEEEcccHhHHHHHHHHHHhcC----Cceeeeecccccccc-cCcceeeeeee
Q 003587 295 KIIYHCGPTNSGKTYNALQRFM-EAKKGIYCSPLRLLAMEVFDKVNALG----VYCSLLTGQEKKLVP-FSNHIACTVEM 368 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~-~~~~~LvlsPtR~La~Q~~~~l~~~g----~~~~l~~g~~~~~~~-~~~~i~~tie~ 368 (809)
|.-|++.|.|+|||++-+-+.. -.+++||++..-.-+.|+..++..+. ..++..|.+.....+ ....++.|.-|
T Consensus 321 RSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsM 400 (776)
T KOG1123|consen 321 RSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSM 400 (776)
T ss_pred cCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeeh
Confidence 5778899999999998443333 35678999988888999988888752 235566665554222 34445556666
Q ss_pred cccCC----------------cccEEEEecccccccccchhHHHHHH--------hhccccccc----------c----c
Q 003587 369 VSTDE----------------MYDVAVIDEIQMMSDACRGYAWTRAL--------LGLMADEIH----------L----C 410 (809)
Q Consensus 369 lt~~r----------------lv~~vVIDEAH~i~d~~~g~~~~~il--------l~l~~~~i~----------l----~ 410 (809)
+.... .+.++|+||+|.+... -|++.+ +||.++.+. | +
T Consensus 401 va~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~----MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKl 476 (776)
T KOG1123|consen 401 VAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK----MFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKL 476 (776)
T ss_pred hhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH----HHHHHHHHHHHHhhccceeEEeeccccccccceeecchh
Confidence 54322 1899999999999754 445444 455554221 1 1
Q ss_pred CCchHHHHHHHHhhhcCCceEEeecc--------------c-----------cchhhHhHHHHHHHHHh--cCCCCEEEE
Q 003587 411 GDPSVLDVVRKICSETGDELHEQHYE--------------R-----------FKPLVVEAKTLLGDLRN--VRSGDCVVA 463 (809)
Q Consensus 411 ~s~~~~~li~~l~~~~~~~~~~~~~~--------------r-----------~~~l~~~~k~ll~~l~~--~~~g~~II~ 463 (809)
-.+.+.++..+ +.--.++.-+ + .+|... ..++.|.+ ...|+.||+
T Consensus 477 YEAnWmdL~~k-----GhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KF---raCqfLI~~HE~RgDKiIV 548 (776)
T KOG1123|consen 477 YEANWMDLQKK-----GHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKF---RACQFLIKFHERRGDKIIV 548 (776)
T ss_pred hhccHHHHHhC-----CceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchh---HHHHHHHHHHHhcCCeEEE
Confidence 23344444321 1100111000 0 111111 22333322 347888999
Q ss_pred echhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCC
Q 003587 464 FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDK 542 (809)
Q Consensus 464 fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~ 542 (809)
|+-. +..+..+-.+. | --.+||..++.+|.++++.|+. +..++-+.-+-+....||+| ...+|.....
T Consensus 549 FsDn-vfALk~YAikl-~--KpfIYG~Tsq~ERm~ILqnFq~-n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH------ 617 (776)
T KOG1123|consen 549 FSDN-VFALKEYAIKL-G--KPFIYGPTSQNERMKILQNFQT-NPKVNTIFLSKVGDTSIDLPEANVLIQISSH------ 617 (776)
T ss_pred Eecc-HHHHHHHHHHc-C--CceEECCCchhHHHHHHHhccc-CCccceEEEeeccCccccCCcccEEEEEccc------
Confidence 8743 23333333332 2 2468999999999999999985 78899999999999999999 8888877641
Q ss_pred cccCCHhHHHHHHcccCCCCCCCCc---eEEEEEecccHHH
Q 003587 543 IIPVPGSQVKQIAGRAGRRGSIYPD---GLTTTLNLDDLDY 580 (809)
Q Consensus 543 ~~P~s~~~y~Qr~GRAGR~G~~~~~---G~~i~~~~~d~~~ 580 (809)
-.|..+=-||.||.-|+.+.... ...|.|++.|...
T Consensus 618 --~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 618 --GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred --ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 34777888999999997653223 4556666665433
No 129
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.10 E-value=1.8e-10 Score=127.91 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=65.0
Q ss_pred eEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCC
Q 003587 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561 (809)
Q Consensus 483 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~ 561 (809)
.+..|.||...++|+++....- .|+..-+|||++++.||||. .+.|++.++ |.|++.+.|..|||||.
T Consensus 559 ~i~SYRGGY~A~DRRKIE~~~F--~G~L~giIaTNALELGIDIG~LDAVl~~GF---------P~S~aNl~QQ~GRAGRR 627 (1034)
T KOG4150|consen 559 AITSYRGGYIAEDRRKIESDLF--GGKLCGIIATNALELGIDIGHLDAVLHLGF---------PGSIANLWQQAGRAGRR 627 (1034)
T ss_pred HHHhhcCccchhhHHHHHHHhh--CCeeeEEEecchhhhccccccceeEEEccC---------chhHHHHHHHhcccccc
Confidence 4567889999999999998765 79999999999999999996 999999999 99999999999999999
Q ss_pred CC
Q 003587 562 GS 563 (809)
Q Consensus 562 G~ 563 (809)
.+
T Consensus 628 Nk 629 (1034)
T KOG4150|consen 628 NK 629 (1034)
T ss_pred CC
Confidence 87
No 130
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.09 E-value=2.5e-09 Score=132.08 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=82.9
Q ss_pred HhcCCCCEEEEec-hhHHHHHHHHHHHh---cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc--
Q 003587 453 RNVRSGDCVVAFS-RREIFEVKMAIEKH---TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-- 526 (809)
Q Consensus 453 ~~~~~g~~II~fs-rk~~~~l~~~L~~~---~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-- 526 (809)
....+|.++|+|+ .+..+.++..|... .++. ++..+.. ..|.++++.|+ +++..||+||+.+.+|||+|
T Consensus 670 ~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~--~~~~~iLlgt~sf~EGVD~~g~ 744 (850)
T TIGR01407 670 TAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFN--NGEKAILLGTSSFWEGVDFPGN 744 (850)
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHH--hCCCeEEEEcceeecccccCCC
Confidence 3446678888885 57778888887641 2333 3333333 57889999999 78889999999999999996
Q ss_pred -ccEEEEcCCCCCCCC---------------------CcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 527 -IRRVVFYSLSKYNGD---------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 527 -V~~VI~~d~~K~dg~---------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
...||...+|--++. -..|..+-.+.|-+||.=|.... .|.++.+-.
T Consensus 745 ~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D--~G~v~ilD~ 813 (850)
T TIGR01407 745 GLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREND--RGSIVILDR 813 (850)
T ss_pred ceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCc--eEEEEEEcc
Confidence 678888887632111 12244566788999999998863 787777754
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=2.6e-08 Score=119.45 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccccc-----
Q 003587 456 RSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR----- 528 (809)
Q Consensus 456 ~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDipV~----- 528 (809)
..|..|++-| -...+.++..|.+. |+...++.+.-...+-.-+.++ ...-.|-|||+.+|||-||-..
T Consensus 447 ~~GrPVLVGT~SVe~SE~ls~~L~~~-gi~h~VLNAk~~~~EA~IIa~A----G~~GaVTIATNMAGRGTDIkLg~n~~~ 521 (913)
T PRK13103 447 ALGRPVLVGTATIETSEHMSNLLKKE-GIEHKVLNAKYHEKEAEIIAQA----GRPGALTIATNMAGRGTDILLGGNWEV 521 (913)
T ss_pred hCCCCEEEEeCCHHHHHHHHHHHHHc-CCcHHHhccccchhHHHHHHcC----CCCCcEEEeccCCCCCCCEecCCchHH
Confidence 3455555543 46778888888775 8777777776443322222221 2255799999999999998422
Q ss_pred ---------------------------------EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 529 ---------------------------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 529 ---------------------------------~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
+||-... +.|.--=.|-.|||||-|. .|.+-.|++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTer---------heSrRID~QLrGRaGRQGD---PGsS~f~lS 589 (913)
T PRK13103 522 EVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASER---------HESRRIDNQLRGRAGRQGD---PGSSRFYLS 589 (913)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeecc---------CchHHHHHHhccccccCCC---CCceEEEEE
Confidence 4555544 7787778899999999998 899988887
Q ss_pred ccHHHH
Q 003587 576 DDLDYL 581 (809)
Q Consensus 576 ~d~~~l 581 (809)
-++.-+
T Consensus 590 lED~Lm 595 (913)
T PRK13103 590 LEDSLM 595 (913)
T ss_pred cCcHHH
Confidence 544443
No 132
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.93 E-value=2.7e-09 Score=106.54 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=80.3
Q ss_pred hhHHhhCC-CeEEEEcCCCChHHHHHHHHHH----cC--CcEEEEcccHhHHHHHHHHHHhcCC-----ceeeeeccccc
Q 003587 287 PFARVMKR-KIIYHCGPTNSGKTYNALQRFM----EA--KKGIYCSPLRLLAMEVFDKVNALGV-----YCSLLTGQEKK 354 (809)
Q Consensus 287 p~~~~l~g-rdviv~apTGSGKTl~~L~~L~----~~--~~~LvlsPtR~La~Q~~~~l~~~g~-----~~~l~~g~~~~ 354 (809)
.+..++.. +.+++.+|||+|||.+++..+. .. .+++|++|++.++.|+.+.+..... ....+.+....
T Consensus 16 ~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (201)
T smart00487 16 AIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKR 95 (201)
T ss_pred HHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchH
Confidence 34445677 8999999999999997444433 22 5789999999999999999988653 23344443311
Q ss_pred c----cc-cC-cceeeeeeec----cc----CCcccEEEEecccccccccchhHHHHHHhhcccc--cccccCCc
Q 003587 355 L----VP-FS-NHIACTVEMV----ST----DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD--EIHLCGDP 413 (809)
Q Consensus 355 ~----~~-~~-~~i~~tie~l----t~----~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~--~i~l~~s~ 413 (809)
. .. .. ..+.+|+..+ .. ...++++||||||++....+...+..++..+... .+.+.++|
T Consensus 96 ~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 96 EQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 0 11 11 3344443221 11 1127899999999999655677777777666333 23334444
No 133
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.93 E-value=2.7e-09 Score=100.18 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=67.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHH------cCCcEEEEcccHhHHHHHHHHHHhcC---Cceeeeecccccc------cccC
Q 003587 295 KIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNALG---VYCSLLTGQEKKL------VPFS 359 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~------~~~~~LvlsPtR~La~Q~~~~l~~~g---~~~~l~~g~~~~~------~~~~ 359 (809)
+.+++.+|||+|||+.++..+. ..++++|++|++.|+.|+.+.+.... ....+..+..... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 4689999999999998544332 34788999999999999999888765 5555555544333 1233
Q ss_pred cceeeeeeeccc--------CCcccEEEEecccccccccchh
Q 003587 360 NHIACTVEMVST--------DEMYDVAVIDEIQMMSDACRGY 393 (809)
Q Consensus 360 ~~i~~tie~lt~--------~rlv~~vVIDEAH~i~d~~~g~ 393 (809)
..+.+|++.+.. ...++++||||+|.+....+..
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHH
Confidence 344555543211 1137999999999998754443
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.86 E-value=1.5e-07 Score=112.60 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=68.8
Q ss_pred hCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHHHH-HHHH---cCCcEEEEcccHhHHHHHHHHHHh----cCCceee
Q 003587 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNAL-QRFM---EAKKGIYCSPLRLLAMEVFDKVNA----LGVYCSL 347 (809)
Q Consensus 276 ~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~~L-~~L~---~~~~~LvlsPtR~La~Q~~~~l~~----~g~~~~l 347 (809)
.+|++ |...+-+..+.-.+--|+.+.||.|||+++. ++.+ .+..+-||+++..||..-++.+.. +|..+++
T Consensus 72 ~lG~r-~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 72 TLGLR-HFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred HhCCC-CCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 56665 4443322223334557889999999999943 3322 466778999999999998888765 4778877
Q ss_pred eeccccccc---cc-Ccceeeee-----eec------cc----CCcccEEEEecccccc
Q 003587 348 LTGQEKKLV---PF-SNHIACTV-----EMV------ST----DEMYDVAVIDEIQMMS 387 (809)
Q Consensus 348 ~~g~~~~~~---~~-~~~i~~ti-----e~l------t~----~rlv~~vVIDEAH~i~ 387 (809)
+.+...... .+ ...+++|. .++ .+ .+.+.++||||||.++
T Consensus 151 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 151 IQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 655433211 11 22333332 111 11 1227899999999884
No 135
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.84 E-value=8.5e-08 Score=115.54 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=89.6
Q ss_pred CCCCEEEEech--hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcC-CCCeEEEEeccccccccccc-ccEEE
Q 003587 456 RSGDCVVAFSR--REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ-DNEFDVLVASDAVGMGLNLN-IRRVV 531 (809)
Q Consensus 456 ~~g~~II~fsr--k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~-~g~~~ILVATdal~~GIDip-V~~VI 531 (809)
..|..|++||+ +..+-|+.+|.. .++...-+-|..+.+.|.+.+..|++| +...-.|.||-|.|-|||+- .+.||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~-r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSL-RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHH-cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 35678999986 444555666655 499999999999999999999999974 45688999999999999996 99999
Q ss_pred EcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 532 ~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
+||- -.++..=+|---||-|-|+ ...=.+|.|++.+
T Consensus 776 IFDS---------DWNPQNDLQAqARaHRIGQ-kk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 776 IFDS---------DWNPQNDLQAQARAHRIGQ-KKHVNVYRLVTKN 811 (1373)
T ss_pred EeCC---------CCCcchHHHHHHHHHhhcc-cceEEEEEEecCC
Confidence 9997 4467777888888888887 2345688898754
No 136
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.83 E-value=1.6e-07 Score=111.00 Aligned_cols=265 Identities=15% Similarity=0.230 Sum_probs=146.8
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHc-----CCcEEEEcccHhHHHHHHHHHHhcCCc-eeeeecccccccc--cCccee
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFME-----AKKGIYCSPLRLLAMEVFDKVNALGVY-CSLLTGQEKKLVP--FSNHIA 363 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~-----~~~~LvlsPtR~La~Q~~~~l~~~g~~-~~l~~g~~~~~~~--~~~~i~ 363 (809)
..+...++-+|.|||||.+.+.++.. +.++++++-+++|+.++..+++..+.. ...+......... ....+.
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLi 126 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLI 126 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEE
Confidence 45667888899999999997777654 468999999999999999999987653 1111111111111 123455
Q ss_pred eeeeecc---cC--CcccEEEEecccccccccchhHHHH---H---Hhh-cccccccccCCch----HHHHHHHHhhhcC
Q 003587 364 CTVEMVS---TD--EMYDVAVIDEIQMMSDACRGYAWTR---A---LLG-LMADEIHLCGDPS----VLDVVRKICSETG 427 (809)
Q Consensus 364 ~tie~lt---~~--rlv~~vVIDEAH~i~d~~~g~~~~~---i---ll~-l~~~~i~l~~s~~----~~~li~~l~~~~~ 427 (809)
+.++.+. .. ..+++|||||+-.++..-+....++ . +.. +......++.+++ .++.++.+.....
T Consensus 127 vqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~ 206 (824)
T PF02399_consen 127 VQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDEN 206 (824)
T ss_pred EEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCc
Confidence 5554432 11 1289999999987765323222221 1 111 1111222333443 3444443322211
Q ss_pred CceEEeeccc----------------------cch----------------------hhHhHHHHHHH-HHhcCCCCEEE
Q 003587 428 DELHEQHYER----------------------FKP----------------------LVVEAKTLLGD-LRNVRSGDCVV 462 (809)
Q Consensus 428 ~~~~~~~~~r----------------------~~~----------------------l~~~~k~ll~~-l~~~~~g~~II 462 (809)
-.++...|.. ..+ ........... +.....|+.|.
T Consensus 207 i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIc 286 (824)
T PF02399_consen 207 IHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNIC 286 (824)
T ss_pred EEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEE
Confidence 1222222210 000 00000111222 23345666666
Q ss_pred Eec-hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc---ccEEEEc--CCC
Q 003587 463 AFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IRRVVFY--SLS 536 (809)
Q Consensus 463 ~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip---V~~VI~~--d~~ 536 (809)
+|| .....++...+....+.++..++|.-+.++ .+.| ++++|+|=|.++..|+++. .+-|.-| .+.
T Consensus 287 vfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W----~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~ 358 (824)
T PF02399_consen 287 VFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW----KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMS 358 (824)
T ss_pred EEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc----cceeEEEEeceEEEEeccchhhceEEEEEecCCC
Confidence 664 444444444444445889999988776662 2345 6899999999999999994 4433322 211
Q ss_pred CCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
+ -.+..+.+|.+||+-.-.. ..++.++.
T Consensus 359 ~-------gpd~~s~~Q~lgRvR~l~~----~ei~v~~d 386 (824)
T PF02399_consen 359 Y-------GPDMVSVYQMLGRVRSLLD----NEIYVYID 386 (824)
T ss_pred C-------CCcHHHHHHHHHHHHhhcc----CeEEEEEe
Confidence 1 2367789999999977665 55665554
No 137
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.82 E-value=4.3e-07 Score=107.75 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCC-eEEEEecccccccccc-cccEEEEcCCCCCCCCC
Q 003587 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE-FDVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDK 542 (809)
Q Consensus 465 srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~-~~ILVATdal~~GIDi-pV~~VI~~d~~K~dg~~ 542 (809)
+-+...++...+.+..|+.++.+||.|+..+|..+++.|++|.+. .-.|.+|-|-|.||++ ...+||.+|.
T Consensus 603 ny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~------- 675 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP------- 675 (776)
T ss_pred cHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC-------
Confidence 447777888877776799999999999999999999999987776 4456667899999999 7999999999
Q ss_pred cccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 543 ~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
..+++.=.|-++||=|+|+. ..-++|.|++
T Consensus 676 --dWNPa~d~QAmaR~~RdGQK-k~v~iYrLla 705 (776)
T KOG0390|consen 676 --DWNPAVDQQAMARAWRDGQK-KPVYIYRLLA 705 (776)
T ss_pred --CCCchhHHHHHHHhccCCCc-ceEEEEEeec
Confidence 77999999999999999982 3456666764
No 138
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.80 E-value=2.6e-07 Score=107.39 Aligned_cols=112 Identities=24% Similarity=0.328 Sum_probs=84.3
Q ss_pred cCCCCEEEEech--hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccc-cccEEE
Q 003587 455 VRSGDCVVAFSR--REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVV 531 (809)
Q Consensus 455 ~~~g~~II~fsr--k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDi-pV~~VI 531 (809)
...|+.++.|+. +...-+-..|....|+.++.+.|..|...|....+.|++.....-.|++|-|.|-|+|+ ..++||
T Consensus 543 ~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVI 622 (923)
T KOG0387|consen 543 KKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVI 622 (923)
T ss_pred hhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEE
Confidence 345667888853 44444444555356999999999999999999999998533334568899999999999 499999
Q ss_pred EcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 532 ~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
.||+ -.+++.=.|-.-||=|.|.. ..=.+|.|.+.
T Consensus 623 IfDP---------dWNPStD~QAreRawRiGQk-kdV~VYRL~t~ 657 (923)
T KOG0387|consen 623 IFDP---------DWNPSTDNQARERAWRIGQK-KDVVVYRLMTA 657 (923)
T ss_pred EECC---------CCCCccchHHHHHHHhhcCc-cceEEEEEecC
Confidence 9998 45777777888888888872 23457777753
No 139
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.79 E-value=2e-07 Score=112.88 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHHHHHh---------------------hcC---CCCeEEEEe
Q 003587 465 SRREIFEVKMAIEKH-----TNHHCCVIYGALPPETRRQQANLF---------------------NDQ---DNEFDVLVA 515 (809)
Q Consensus 465 srk~~~~l~~~L~~~-----~g~~v~~lhg~l~~~~R~~~~~~F---------------------~~~---~g~~~ILVA 515 (809)
+-+.+.+++..|... ..+.+++||+..+...|..+.+.. ... .+...|+||
T Consensus 765 nI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~ 844 (1110)
T TIGR02562 765 NIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLA 844 (1110)
T ss_pred CchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEE
Confidence 457888888888753 235689999999988888766543 100 246799999
Q ss_pred cccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHH
Q 003587 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (809)
Q Consensus 516 Tdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l 581 (809)
|.+++.|+|++.+.+|-- |.++.+.+|++||+.|.|.......=+.++..+...+
T Consensus 845 Tqv~E~g~D~dfd~~~~~-----------~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 845 TPVEEVGRDHDYDWAIAD-----------PSSMRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred eeeEEEEecccCCeeeec-----------cCcHHHHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 999999999999888865 6799999999999999987322222233444444444
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=4.1e-07 Score=108.37 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=83.6
Q ss_pred HHHHHHHh-cCCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCC-CeEEEEeccccccc
Q 003587 447 TLLGDLRN-VRSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDN-EFDVLVASDAVGMG 522 (809)
Q Consensus 447 ~ll~~l~~-~~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g-~~~ILVATdal~~G 522 (809)
.++..+.. +..|..|++.| -...+.++..|.+. |+...++++.-. +++..+-. . .| .-.|.|||+.+|||
T Consensus 414 Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~-gi~h~vLNAk~~--e~EA~IIa-~--AG~~GaVTIATNMAGRG 487 (925)
T PRK12903 414 AVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA-NIPHTVLNAKQN--AREAEIIA-K--AGQKGAITIATNMAGRG 487 (925)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCCceeecccch--hhHHHHHH-h--CCCCCeEEEecccccCC
Confidence 34444432 34555555554 47888899888875 899888888633 33333222 1 23 56899999999999
Q ss_pred cccccc---------EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHHH
Q 003587 523 LNLNIR---------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 523 IDipV~---------~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l~ 582 (809)
-||-.. +||.... |.|.--=-|..|||||-|. .|.+-.|++-++.-++
T Consensus 488 TDI~Lg~~V~~~GGLhVIgTer---------heSrRIDnQLrGRaGRQGD---pGss~f~lSLeD~L~r 544 (925)
T PRK12903 488 TDIKLSKEVLELGGLYVLGTDK---------AESRRIDNQLRGRSGRQGD---VGESRFFISLDDQLFR 544 (925)
T ss_pred cCccCchhHHHcCCcEEEeccc---------CchHHHHHHHhcccccCCC---CCcceEEEecchHHHH
Confidence 999532 8888876 7777777899999999999 8988888875554443
No 141
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.76 E-value=1.7e-08 Score=100.49 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH-cCCcEEEEcccHhHHHHHHHHHHhcCC
Q 003587 294 RKIIYHCGPTNSGKTYNALQRFM-EAKKGIYCSPLRLLAMEVFDKVNALGV 343 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L~-~~~~~LvlsPtR~La~Q~~~~l~~~g~ 343 (809)
.+.+++.||||||||.+++..+. -..++++++|+..|+.|..+.+..++.
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhh
Confidence 68999999999999999553222 122899999999999999999965543
No 142
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.75 E-value=5.2e-07 Score=110.74 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=78.2
Q ss_pred cCCCCEEEEec-hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc---ccEE
Q 003587 455 VRSGDCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IRRV 530 (809)
Q Consensus 455 ~~~g~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip---V~~V 530 (809)
..+|.++|+|+ .+....++..|... ...+ ...|.-. .|.++++.|+ .++..||++|+.+-.|||+| ...|
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~-~~~~-l~Qg~~~--~~~~l~~~F~--~~~~~vLlG~~sFwEGVD~p~~~~~~v 718 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQW-QVSH-LAQEKNG--TAYNIKKRFD--RGEQQILLGLGSFWEGVDFVQADRMIE 718 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhc-CCcE-EEeCCCc--cHHHHHHHHH--cCCCeEEEecchhhCCCCCCCCCeEEE
Confidence 35678888885 56777777777653 4444 4444322 2456899998 67778999999999999994 5667
Q ss_pred EEcCCCCCCC----------------C-----CcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 531 VFYSLSKYNG----------------D-----KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 531 I~~d~~K~dg----------------~-----~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
|...+|--.+ . -..|.-+-.+.|-+||.=|.... .|.++.+-..
T Consensus 719 iI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D--~Gvv~ilD~R 783 (820)
T PRK07246 719 VITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQ--KSAVLILDRR 783 (820)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCC--cEEEEEECCc
Confidence 7777652111 1 12244466789999999998763 7988777643
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.69 E-value=9.4e-07 Score=105.54 Aligned_cols=86 Identities=9% Similarity=-0.077 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhc-C-Cceeeeecccccccc---------c-Ccceeee
Q 003587 302 PTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNAL-G-VYCSLLTGQEKKLVP---------F-SNHIACT 365 (809)
Q Consensus 302 pTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~-g-~~~~l~~g~~~~~~~---------~-~~~i~~t 365 (809)
.+|||||.+++..+ ..++++||++|...|..|+.++|++. | ..+.++++....... . ...++.|
T Consensus 168 ~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGt 247 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGT 247 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 35999999977654 35778999999999999999999874 4 567777765443211 1 2223333
Q ss_pred -eeecccCCcccEEEEecccccc
Q 003587 366 -VEMVSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 366 -ie~lt~~rlv~~vVIDEAH~i~ 387 (809)
--++.|-..+.+|||||-|.-+
T Consensus 248 RSAvFaP~~~LgLIIvdEEhd~s 270 (665)
T PRK14873 248 RSAVFAPVEDLGLVAIWDDGDDL 270 (665)
T ss_pred ceeEEeccCCCCEEEEEcCCchh
Confidence 3566777668999999999765
No 144
>COG4889 Predicted helicase [General function prediction only]
Probab=98.68 E-value=3.1e-07 Score=106.95 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=67.7
Q ss_pred CCeEEEEe--CCCCHHHHHHHHHHhhc-CCCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHc
Q 003587 481 NHHCCVIY--GALPPETRRQQANLFND-QDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556 (809)
Q Consensus 481 g~~v~~lh--g~l~~~~R~~~~~~F~~-~~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~G 556 (809)
++.+.+=| |.|...+|...+..-+. +..+++||-.--.++.|+|+| .+.||++++ -.+..+.+|-+|
T Consensus 497 nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~p---------r~smVDIVQaVG 567 (1518)
T COG4889 497 NLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDP---------RSSMVDIVQAVG 567 (1518)
T ss_pred CceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecC---------chhHHHHHHHHH
Confidence 45555555 88999999555443321 467899999999999999999 999999998 569999999999
Q ss_pred ccCCCCCCCCceEEEEEe
Q 003587 557 RAGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 557 RAGR~G~~~~~G~~i~~~ 574 (809)
|+-|-.+....|++|+=+
T Consensus 568 RVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 568 RVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred HHHHhCcCCccceEEEEe
Confidence 999976555578888765
No 145
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.60 E-value=2.8e-07 Score=107.77 Aligned_cols=277 Identities=16% Similarity=0.239 Sum_probs=158.8
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHH----cCC-----cEEEEcccHhHHHHHHHHHHhc-CCceeeeeccccccc----
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFM----EAK-----KGIYCSPLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLV---- 356 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~----~~~-----~~LvlsPtR~La~Q~~~~l~~~-g~~~~l~~g~~~~~~---- 356 (809)
+..++.+++.+.||.|||..+.+.|+ ... .+.++-|+|.-|..+++++... +...+-..|...+..
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~p 469 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATP 469 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccc
Confidence 35677889999999999999555554 333 2355569999999999998764 444444445554432
Q ss_pred -ccCcceeeeeeeccc----CC-cccEEEEecccccccccchhHHHHHHhhccc---ccccccCCchH------------
Q 003587 357 -PFSNHIACTVEMVST----DE-MYDVAVIDEIQMMSDACRGYAWTRALLGLMA---DEIHLCGDPSV------------ 415 (809)
Q Consensus 357 -~~~~~i~~tie~lt~----~r-lv~~vVIDEAH~i~d~~~g~~~~~ill~l~~---~~i~l~~s~~~------------ 415 (809)
+......||++++-. ++ -+.++++||+|+.--. +.-+..++.++.. .....+.+++.
T Consensus 470 rpyg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~ 547 (1282)
T KOG0921|consen 470 RPYGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSI 547 (1282)
T ss_pred ccccceeeeccchhhhhhhhcccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccc
Confidence 344456677655422 22 2899999999997421 1112222222211 10000011000
Q ss_pred -----------------HHHHHHHhhhcCCceEEee-----------------cc--------------------ccchh
Q 003587 416 -----------------LDVVRKICSETGDELHEQH-----------------YE--------------------RFKPL 441 (809)
Q Consensus 416 -----------------~~li~~l~~~~~~~~~~~~-----------------~~--------------------r~~~l 441 (809)
.+++.-+..-.......+. +. +..+.
T Consensus 548 p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f 627 (1282)
T KOG0921|consen 548 PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPF 627 (1282)
T ss_pred cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchh
Confidence 0000000000000000000 00 00000
Q ss_pred hHhHHHHHHHHHhcCCCCEEEEe-c-hhHHHHHHHHHHHh------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEE
Q 003587 442 VVEAKTLLGDLRNVRSGDCVVAF-S-RREIFEVKMAIEKH------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513 (809)
Q Consensus 442 ~~~~k~ll~~l~~~~~g~~II~f-s-rk~~~~l~~~L~~~------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~IL 513 (809)
.+. +.++..+....-...|.+| . -..+..|..+|... ..+.+...|+.++..+..++.+..- .|..+||
T Consensus 628 ~l~-Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p--~gv~kii 704 (1282)
T KOG0921|consen 628 GLI-EALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVP--EGVTKII 704 (1282)
T ss_pred HHH-HHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccc--ccccccc
Confidence 000 1122222222222334444 3 36777777777542 2357788899888777767766654 7999999
Q ss_pred Eeccccccccccc-ccEEEEcCCCC---CCCC------CcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 514 VASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 514 VATdal~~GIDip-V~~VI~~d~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+.|+++...|.+. +.+||+.+..+ |... ...+.|.-...||.||+||..+ |.|..+.+.
T Consensus 705 ~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~----G~~f~lcs~ 773 (1282)
T KOG0921|consen 705 LSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP----GFCFHLCSR 773 (1282)
T ss_pred cccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc----cccccccHH
Confidence 9999999999994 99999887654 1111 4567888999999999999887 999888764
No 146
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.54 E-value=7.3e-06 Score=95.53 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=86.0
Q ss_pred CCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEc
Q 003587 456 RSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFY 533 (809)
Q Consensus 456 ~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~ 533 (809)
..|+.|++||. ....++.+...+..++....+.|..+-.+|...+..|+....-.-.|.+|-|.|-|||+- .+.||.+
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIih 854 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIH 854 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEe
Confidence 45788999987 677777777777779999999999999999999999984333345688999999999996 9999999
Q ss_pred CCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 534 d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
|+ .-++-.=.|---||-|.|.. ..=.+|.|++.+
T Consensus 855 D~---------dFNP~dD~QAEDRcHRvGQt-kpVtV~rLItk~ 888 (941)
T KOG0389|consen 855 DI---------DFNPYDDKQAEDRCHRVGQT-KPVTVYRLITKS 888 (941)
T ss_pred ec---------CCCCcccchhHHHHHhhCCc-ceeEEEEEEecC
Confidence 97 22333444555566666552 246788888754
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.51 E-value=7.6e-06 Score=98.16 Aligned_cols=92 Identities=18% Similarity=0.124 Sum_probs=59.7
Q ss_pred eEEEEcCCCChHHHHHHH-HHH---cCCcEEEEcccHhHHHHHHHHHHh----cCCceeeeeccccccc---c-cCccee
Q 003587 296 IIYHCGPTNSGKTYNALQ-RFM---EAKKGIYCSPLRLLAMEVFDKVNA----LGVYCSLLTGQEKKLV---P-FSNHIA 363 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~-~L~---~~~~~LvlsPtR~La~Q~~~~l~~----~g~~~~l~~g~~~~~~---~-~~~~i~ 363 (809)
--|+.+.||-|||+++.. +.+ .+..+-||++.--||..=++.+.. +|..|+++.+...... . ....++
T Consensus 100 G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~~DItY 179 (939)
T PRK12902 100 GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITY 179 (939)
T ss_pred CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcCCCeEE
Confidence 346899999999999543 332 566788999999999888777765 4888887765432211 1 122334
Q ss_pred eeee----------ecc-c----CCcccEEEEecccccc
Q 003587 364 CTVE----------MVS-T----DEMYDVAVIDEIQMMS 387 (809)
Q Consensus 364 ~tie----------~lt-~----~rlv~~vVIDEAH~i~ 387 (809)
+|.- |.. . .+.+.++||||||.++
T Consensus 180 gTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 180 ATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred ecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 4320 111 1 1237899999999884
No 148
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.38 E-value=3.5e-07 Score=87.69 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHH-----HHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccccccc-ccCcceee--
Q 003587 293 KRKIIYHCGPTNSGKTYNALQR-----FMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV-PFSNHIAC-- 364 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~-----L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~-~~~~~i~~-- 364 (809)
+|+..++-..+|+|||.-.|+. +.+.+++|||.|||.++.++.+.|+...+.+.. ....... .....-+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t--~~~~~~~~g~~~i~vMc~ 80 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHT--NARMRTHFGSSIIDVMCH 80 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEES--TTSS----SSSSEEEEEH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCc--eeeeccccCCCccccccc
Confidence 5777889999999999975554 446889999999999999999999876543321 1110000 11111111
Q ss_pred -e--eeecccCCc--ccEEEEecccccc
Q 003587 365 -T--VEMVSTDEM--YDVAVIDEIQMMS 387 (809)
Q Consensus 365 -t--ie~lt~~rl--v~~vVIDEAH~i~ 387 (809)
| --++.+.+. ++++|+||||..-
T Consensus 81 at~~~~~~~p~~~~~yd~II~DEcH~~D 108 (148)
T PF07652_consen 81 ATYGHFLLNPCRLKNYDVIIMDECHFTD 108 (148)
T ss_dssp HHHHHHHHTSSCTTS-SEEEECTTT--S
T ss_pred HHHHHHhcCcccccCccEEEEeccccCC
Confidence 1 123344433 9999999999963
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.29 E-value=4.8e-05 Score=84.78 Aligned_cols=130 Identities=24% Similarity=0.300 Sum_probs=89.9
Q ss_pred CCCEEEEec-h-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEE-EEeccccccccccc-ccEEEE
Q 003587 457 SGDCVVAFS-R-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV-LVASDAVGMGLNLN-IRRVVF 532 (809)
Q Consensus 457 ~g~~II~fs-r-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~I-LVATdal~~GIDip-V~~VI~ 532 (809)
++..+++|+ . .-.+.+...+.+. +....-+.|..++..|...-+.|.. +.++.| +++-.++++||++. .+.||+
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r-~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKR-KVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHc-CCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeecccceeeeccceEEE
Confidence 445556664 3 3445666667664 8888999999999999999999985 555555 44457899999996 999999
Q ss_pred cCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEec-ccHHHHHHHHcCCchHHHHhcC
Q 003587 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL-DDLDYLIECLKQPFEVVKKVGL 597 (809)
Q Consensus 533 ~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~-~d~~~l~~~l~~~~~~~~~~~~ 597 (809)
..+ +.++.-.+|---|+-|-|.....++.|+.-. .-++++..++.+...-+...++
T Consensus 569 aEL---------~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl 625 (689)
T KOG1000|consen 569 AEL---------HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGL 625 (689)
T ss_pred EEe---------cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhccc
Confidence 998 6677777777777777776322343343332 3345666666665555554444
No 150
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.19 E-value=5.3e-05 Score=91.93 Aligned_cols=106 Identities=25% Similarity=0.285 Sum_probs=74.2
Q ss_pred EEEEech--hHHHHHHHHHHHhcCCeEE--EEeCCCCHHHHHHHHHHhhcCCCCeEEEE-ecccccccccc-cccEEEEc
Q 003587 460 CVVAFSR--REIFEVKMAIEKHTNHHCC--VIYGALPPETRRQQANLFNDQDNEFDVLV-ASDAVGMGLNL-NIRRVVFY 533 (809)
Q Consensus 460 ~II~fsr--k~~~~l~~~L~~~~g~~v~--~lhg~l~~~~R~~~~~~F~~~~g~~~ILV-ATdal~~GIDi-pV~~VI~~ 533 (809)
.+++||+ ...+-+.+.|.+..-..|. .+.|..++..|.++.++|+. +..++||+ +|-+.|-|+|+ ..+.||++
T Consensus 1342 RiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFv 1420 (1549)
T KOG0392|consen 1342 RILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFV 1420 (1549)
T ss_pred eeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEE
Confidence 3555543 4445555666653333444 67899999999999999993 33788765 66899999999 59999998
Q ss_pred CCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 534 d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
+- -.++..=.|-.-||-|-|+. ..=-+|.|++.
T Consensus 1421 EH---------DWNPMrDLQAMDRAHRIGQK-rvVNVyRlItr 1453 (1549)
T KOG0392|consen 1421 EH---------DWNPMRDLQAMDRAHRIGQK-RVVNVYRLITR 1453 (1549)
T ss_pred ec---------CCCchhhHHHHHHHHhhcCc-eeeeeeeehhc
Confidence 86 33555558999999999971 12335556553
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.19 E-value=0.0007 Score=75.61 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=68.2
Q ss_pred HhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeE-EEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHH
Q 003587 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD-VLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555 (809)
Q Consensus 478 ~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~-ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~ 555 (809)
...|+.|+-+-|+|++..|...++.|+. +-.+. .||+-.+.|..+|+- ...|...|+ |.+++--.|--
T Consensus 659 ~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDP---------WWNpaVe~Qa~ 728 (791)
T KOG1002|consen 659 GKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDP---------WWNPAVEWQAQ 728 (791)
T ss_pred hccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeecc---------cccHHHHhhhh
Confidence 3469999999999999999999999984 33333 467778888899995 999999998 77888777766
Q ss_pred cccCCCCCCCCceEEEEEec
Q 003587 556 GRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 556 GRAGR~G~~~~~G~~i~~~~ 575 (809)
-|.-|-|. +..=.++.|+-
T Consensus 729 DRiHRIGQ-~rPvkvvrf~i 747 (791)
T KOG1002|consen 729 DRIHRIGQ-YRPVKVVRFCI 747 (791)
T ss_pred hhHHhhcC-ccceeEEEeeh
Confidence 67777665 33456777763
No 152
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.03 E-value=9.8e-05 Score=92.18 Aligned_cols=278 Identities=18% Similarity=0.129 Sum_probs=151.1
Q ss_pred CCCeEEEEcCCCChHHHHH--H----HHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeee----ccccccc---ccC
Q 003587 293 KRKIIYHCGPTNSGKTYNA--L----QRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT----GQEKKLV---PFS 359 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~--L----~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~----g~~~~~~---~~~ 359 (809)
.++.-++.--||||||+.. + ..+...+++++|+-++.|-.|+.+.+..++..+.... +.+.... ...
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~ 351 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKG 351 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCC
Confidence 3566889999999999982 1 1223567899999999999999999998765543311 1111111 123
Q ss_pred cceeeeeeecccCC----------cccEEEEecccccccccchhHHHHHHhhcc-cccccccCCchHHHHHHH---Hhh-
Q 003587 360 NHIACTVEMVSTDE----------MYDVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIHLCGDPSVLDVVRK---ICS- 424 (809)
Q Consensus 360 ~~i~~tie~lt~~r----------lv~~vVIDEAH~i~d~~~g~~~~~ill~l~-~~~i~l~~s~~~~~li~~---l~~- 424 (809)
..+++|+..++... .==+||+||||+-- +|..-..+-.+++ +..+.++|+|........ ...
T Consensus 352 ~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~~a~~~gFTGTPi~~~d~~tt~~~fg~ 428 (962)
T COG0610 352 KIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALKKAIFIGFTGTPIFKEDKDTTKDVFGD 428 (962)
T ss_pred cEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhccceEEEeeCCccccccccchhhhhcc
Confidence 56677775443321 12478999999965 3444333333333 334455666643222210 000
Q ss_pred ---------hcCCceE-Eeeccccch---------------------h---------------------hHh----HHHH
Q 003587 425 ---------ETGDELH-EQHYERFKP---------------------L---------------------VVE----AKTL 448 (809)
Q Consensus 425 ---------~~~~~~~-~~~~~r~~~---------------------l---------------------~~~----~k~l 448 (809)
...+..+ ...|..... . ... .+.+
T Consensus 429 ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i 508 (962)
T COG0610 429 YLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDI 508 (962)
T ss_pred eeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHH
Confidence 0000000 000100000 0 000 0011
Q ss_pred HHHHH--hcCCCCEEEEe-chhHHHHHHHHHHHhc----------C------------CeEEEEeCCCCHHHHHHHHHHh
Q 003587 449 LGDLR--NVRSGDCVVAF-SRREIFEVKMAIEKHT----------N------------HHCCVIYGALPPETRRQQANLF 503 (809)
Q Consensus 449 l~~l~--~~~~g~~II~f-srk~~~~l~~~L~~~~----------g------------~~v~~lhg~l~~~~R~~~~~~F 503 (809)
..... ...++.+.+++ +++-+..++....... + ......|... ...+......|
T Consensus 509 ~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~ 587 (962)
T COG0610 509 YDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDLIKRF 587 (962)
T ss_pred HHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhhhhhh
Confidence 12222 23345566666 4553444444432210 0 0000002222 23333445555
Q ss_pred hcCCCCeEEEEecccccccccccccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCC-CCceEEEEEecccHHHHH
Q 003587 504 NDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI-YPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 504 ~~~~g~~~ILVATdal~~GIDipV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~-~~~G~~i~~~~~d~~~l~ 582 (809)
..++...++||-+|.+-+|.|.|+-+++-.|- |.---..+|-+-|+.|.-.. .+.|.++.|.. -.+.+.
T Consensus 588 ~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK---------~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g-l~e~l~ 657 (962)
T COG0610 588 KLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK---------PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG-LKEALK 657 (962)
T ss_pred cCcCCCCCEEEEEccccccCCccccceEEecc---------ccccchHHHHHHHhccCCCCCCCCcEEEECcc-hHHHHH
Confidence 44588999999999999999999777777776 77777899999999997554 46899999886 333343
Q ss_pred HH
Q 003587 583 EC 584 (809)
Q Consensus 583 ~~ 584 (809)
++
T Consensus 658 ~A 659 (962)
T COG0610 658 KA 659 (962)
T ss_pred HH
Confidence 33
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.70 E-value=0.00024 Score=85.24 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=80.2
Q ss_pred CEEEEechhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCe-EEEEeccccccccccc-ccEEEEcCCC
Q 003587 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF-DVLVASDAVGMGLNLN-IRRVVFYSLS 536 (809)
Q Consensus 459 ~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~-~ILVATdal~~GIDip-V~~VI~~d~~ 536 (809)
.+++||....+..+........+++...+.|....++|-..++.|++|+..+ ..|.+|-+.|.|+|+- .+.||.+|.
T Consensus 728 RVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifds- 806 (1157)
T KOG0386|consen 728 RVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDS- 806 (1157)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecC-
Confidence 3444444555555544444444788889999999999999999999877665 4578899999999996 999999997
Q ss_pred CCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
-.++-...|+--||-|-|.. ..-.++.+.+
T Consensus 807 --------dwnp~~d~qaqdrahrigq~-~evRv~rl~t 836 (1157)
T KOG0386|consen 807 --------DWNPHQDLQAQDRAHRIGQK-KEVRVLRLIT 836 (1157)
T ss_pred --------CCCchhHHHHHHHHHHhhch-hheeeeeeeh
Confidence 45778899999999998872 2334444443
No 154
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.66 E-value=0.00016 Score=77.94 Aligned_cols=120 Identities=19% Similarity=0.193 Sum_probs=69.1
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH---cC-C-----cEEEEcccHhHHHHHHHHHHhcCC----ceeeeeccc------
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM---EA-K-----KGIYCSPLRLLAMEVFDKVNALGV----YCSLLTGQE------ 352 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~---~~-~-----~~LvlsPtR~La~Q~~~~l~~~g~----~~~l~~g~~------ 352 (809)
...+..++.-++|+|||..++..+. .. + .+|||+|. .+..+...++.++.. .+-++.|..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 4456788889999999998554433 22 1 48999999 888899999988752 344445544
Q ss_pred ccccccCcceeeeeeecc-----cC------CcccEEEEecccccccccchhHHHHHHhhccccc-ccccCCch
Q 003587 353 KKLVPFSNHIACTVEMVS-----TD------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE-IHLCGDPS 414 (809)
Q Consensus 353 ~~~~~~~~~i~~tie~lt-----~~------rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~-i~l~~s~~ 414 (809)
.........+.++.+.+. .. ..+++|||||+|.+-+ ........+..+.+.. +.++++|.
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~~~l~~l~~~~~~lLSgTP~ 173 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRYKALRKLRARYRWLLSGTPI 173 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHHHHHHCCCECEEEEE-SS-S
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEeccccccc--ccccccccccccccceEEeeccccc
Confidence 111222334555555544 00 1179999999999953 3445555666565443 34456653
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.60 E-value=9e-05 Score=87.92 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=42.9
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH------cCCcEEEEcccHhHHHHHHHHHHhcC
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNALG 342 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~------~~~~~LvlsPtR~La~Q~~~~l~~~g 342 (809)
.+++.+++.||||+|||++|+.+.+ .++++||++||++|+.|+++.+..+.
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 5678999999999999999776653 25789999999999999998776543
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.40 E-value=0.008 Score=70.16 Aligned_cols=85 Identities=25% Similarity=0.287 Sum_probs=66.9
Q ss_pred cCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEE-EEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcc
Q 003587 480 TNHHCCVIYGALPPETRRQQANLFNDQDNEFDV-LVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGR 557 (809)
Q Consensus 480 ~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~I-LVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GR 557 (809)
.|+....+||.....+|..+.+.|+..+|..+| |+.=.+.|.|||+- ..++|..|+ -.+++-=.|-.-|
T Consensus 769 ~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl---------HWNPaLEqQAcDR 839 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL---------HWNPALEQQACDR 839 (901)
T ss_pred CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec---------ccCHHHHHHHHHH
Confidence 588999999999999999999999875664555 45567889999995 999999998 4577777788888
Q ss_pred cCCCCCCCCceEEEEEe
Q 003587 558 AGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 558 AGR~G~~~~~G~~i~~~ 574 (809)
.-|.|.. ..-+++.|.
T Consensus 840 IYR~GQk-K~V~IhR~~ 855 (901)
T KOG4439|consen 840 IYRMGQK-KDVFIHRLM 855 (901)
T ss_pred HHHhccc-CceEEEEEE
Confidence 8888872 123344444
No 157
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.32 E-value=0.016 Score=65.98 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=86.4
Q ss_pred HHHHHHH-hcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccc--ccc
Q 003587 447 TLLGDLR-NVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV--GMG 522 (809)
Q Consensus 447 ~ll~~l~-~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal--~~G 522 (809)
.++-.+. ....+.++||. |--+-..+...|.+. +...+.+|--.++.+-.++-..|. +|+.+||+-|-=+ =+=
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~-~~sF~~i~EYts~~~isRAR~~F~--~G~~~iLL~TER~HFfrR 365 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE-NISFVQISEYTSNSDISRARSQFF--HGRKPILLYTERFHFFRR 365 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc-CCeEEEecccCCHHHHHHHHHHHH--cCCceEEEEEhHHhhhhh
Confidence 4555555 44556667766 456777788888764 889999999899988888899998 8999999999622 233
Q ss_pred ccc-cccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCC---CCCceEEEEEecccHHHHHHH
Q 003587 523 LNL-NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS---IYPDGLTTTLNLDDLDYLIEC 584 (809)
Q Consensus 523 IDi-pV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~---~~~~G~~i~~~~~d~~~l~~~ 584 (809)
..| .|++||+|++ |..+.=|...++-.+.... ....+.|+++|+.-+....+.
T Consensus 366 y~irGi~~viFY~~---------P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 366 YRIRGIRHVIFYGP---------PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred ceecCCcEEEEECC---------CCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 445 4999999999 6665555554443332211 122578999998655444443
No 158
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.31 E-value=8.8e-05 Score=89.18 Aligned_cols=108 Identities=24% Similarity=0.222 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH------cCCcEEEEcccHhHHHHHHHHHHhc----CCceeeeecccccc---cccCc
Q 003587 294 RKIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTGQEKKL---VPFSN 360 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L~------~~~~~LvlsPtR~La~Q~~~~l~~~----g~~~~l~~g~~~~~---~~~~~ 360 (809)
..++++.+|||+|||.++-.++. ...+++|++|..+|+..-.+.+... |+++.-.+|+...+ +..+.
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~~ 1022 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREAD 1022 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecCc
Confidence 45678889999999999655543 3468999999999999888877654 55555556655443 22344
Q ss_pred ceeeeeeecccC-C---------cccEEEEecccccccccchhHHHHHHhhc
Q 003587 361 HIACTVEMVSTD-E---------MYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (809)
Q Consensus 361 ~i~~tie~lt~~-r---------lv~~vVIDEAH~i~d~~~g~~~~~ill~l 402 (809)
.+++|++...-. | .++.+|+||.|++.+ ++|+.+..+....
T Consensus 1023 ~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~ 1073 (1230)
T KOG0952|consen 1023 IVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRM 1073 (1230)
T ss_pred eEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeecc
Confidence 555566544221 1 178899999999986 4777766554443
No 159
>PF13245 AAA_19: Part of AAA domain
Probab=97.21 E-value=0.00099 Score=57.56 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCChHHHHHH---HHHHc-----CCcEEEEcccHhHHHHHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYNAL---QRFME-----AKKGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L---~~L~~-----~~~~LvlsPtR~La~Q~~~~l 338 (809)
+..+++.||.|||||..++ ..+.. +.+++|++|++.++.++.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 5566779999999996633 33332 567899999999999999999
No 160
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.99 E-value=0.00091 Score=74.83 Aligned_cols=89 Identities=22% Similarity=0.217 Sum_probs=54.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHH------cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeee-e
Q 003587 295 KIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTV-E 367 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~------~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~ti-e 367 (809)
+.++|.|..|||||+.++..+. .+..++++++...|+..+.+.+...... ... ..... ... ...... .
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-~~~-~~~~~--~~~-~~i~~~~~ 76 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-KLK-KSDFR--KPT-SFINNYSE 76 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc-chh-hhhhh--hhH-HHHhhccc
Confidence 4688999999999999544332 4567899999999999999888764300 000 00000 000 000000 0
Q ss_pred ecccCCcccEEEEeccccccc
Q 003587 368 MVSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 368 ~lt~~rlv~~vVIDEAH~i~d 388 (809)
...+...+++|||||||++.+
T Consensus 77 ~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 77 SDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ccccCCcCCEEEEehhHhhhh
Confidence 111223389999999999987
No 161
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.96 E-value=0.0024 Score=65.45 Aligned_cols=108 Identities=22% Similarity=0.230 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCChHHHHH---HHHHH-cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeec
Q 003587 294 RKIIYHCGPTNSGKTYNA---LQRFM-EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (809)
Q Consensus 294 grdviv~apTGSGKTl~~---L~~L~-~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~l 369 (809)
.+.+++.||.|+|||+.. ...+. .+.++++++||...+..+.+.. |+.+.-+........... ......
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~---~~~a~Ti~~~l~~~~~~~--~~~~~~-- 90 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT---GIEAQTIHSFLYRIPNGD--DEGRPE-- 90 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH---TS-EEEHHHHTTEECCEE--CCSSCC--
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh---CcchhhHHHHHhcCCccc--cccccc--
Confidence 356888899999999982 22233 3457889999999998877774 333322211110000000 000000
Q ss_pred ccCCcccEEEEecccccccccchhHHHHHHhhccc--ccccccCCch
Q 003587 370 STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA--DEIHLCGDPS 414 (809)
Q Consensus 370 t~~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~--~~i~l~~s~~ 414 (809)
....+++|||||-++... .+..++..+.. .++.+++++.
T Consensus 91 --~~~~~vliVDEasmv~~~----~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 91 --LPKKDVLIVDEASMVDSR----QLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp ---TSTSEEEESSGGG-BHH----HHHHHHHHS-T-T-EEEEEE-TT
T ss_pred --CCcccEEEEecccccCHH----HHHHHHHHHHhcCCEEEEECCcc
Confidence 112579999999999842 45555554444 3455667665
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.92 E-value=0.0029 Score=77.43 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=77.4
Q ss_pred cCCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc----cc
Q 003587 455 VRSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN----IR 528 (809)
Q Consensus 455 ~~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip----V~ 528 (809)
+..|..|++-| -...+.++..|.+. |+...++++.....+-+-+.++= ..-.|-|||+.+|||-||- |.
T Consensus 625 ~~~GrPVLVGT~SVe~SE~lS~~L~~~-gI~H~VLNAK~h~~EAeIVA~AG----~~GaVTIATNMAGRGTDIkLg~~V~ 699 (1112)
T PRK12901 625 SEAGRPVLVGTTSVEISELLSRMLKMR-KIPHNVLNAKLHQKEAEIVAEAG----QPGTVTIATNMAGRGTDIKLSPEVK 699 (1112)
T ss_pred HHCCCCEEEEeCcHHHHHHHHHHHHHc-CCcHHHhhccchhhHHHHHHhcC----CCCcEEEeccCcCCCcCcccchhhH
Confidence 34555555553 36667777777764 88877777765544433333332 2457999999999999983 43
Q ss_pred -----EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHH
Q 003587 529 -----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (809)
Q Consensus 529 -----~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l 581 (809)
+||-... +.|.---.|-.|||||-|. .|.+-.|++-++.-+
T Consensus 700 e~GGL~VIgTer---------heSrRID~QLrGRaGRQGD---PGsS~f~lSLEDdLm 745 (1112)
T PRK12901 700 AAGGLAIIGTER---------HESRRVDRQLRGRAGRQGD---PGSSQFYVSLEDNLM 745 (1112)
T ss_pred HcCCCEEEEccC---------CCcHHHHHHHhcccccCCC---CCcceEEEEcccHHH
Confidence 6777665 8899999999999999998 899888887444333
No 163
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.88 E-value=0.0017 Score=70.70 Aligned_cols=52 Identities=25% Similarity=0.171 Sum_probs=42.0
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHH-----cCC-----cEEEEcccHhHHHHHHHHHHhcC
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFM-----EAK-----KGIYCSPLRLLAMEVFDKVNALG 342 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~-----~~~-----~~LvlsPtR~La~Q~~~~l~~~g 342 (809)
+..|+.+++.||||+|||+++|.+.+ .+. +++|+++|..+..|....+++..
T Consensus 24 ~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred HHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 36788999999999999999665543 233 68899999999999988887753
No 164
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.88 E-value=0.0017 Score=70.70 Aligned_cols=52 Identities=25% Similarity=0.171 Sum_probs=42.0
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHH-----cCC-----cEEEEcccHhHHHHHHHHHHhcC
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFM-----EAK-----KGIYCSPLRLLAMEVFDKVNALG 342 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~-----~~~-----~~LvlsPtR~La~Q~~~~l~~~g 342 (809)
+..|+.+++.||||+|||+++|.+.+ .+. +++|+++|..+..|....+++..
T Consensus 24 ~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred HHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 36788999999999999999665543 233 68899999999999988887753
No 165
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.77 E-value=0.0013 Score=67.67 Aligned_cols=112 Identities=22% Similarity=0.314 Sum_probs=47.2
Q ss_pred hhCCCeEEEEcCCCChHHHHHH----HHHHcCC--cEEEEcccHhHHHHHHHHHHhcCCceeeeeccccccc--------
Q 003587 291 VMKRKIIYHCGPTNSGKTYNAL----QRFMEAK--KGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV-------- 356 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L----~~L~~~~--~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~-------- 356 (809)
++..+.+++.||.|||||+.++ ..+..+. +.+|+-|..+. |...+.+-|+.....
T Consensus 16 l~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-----------~~~lGflpG~~~eK~~p~~~p~~ 84 (205)
T PF02562_consen 16 LLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-----------GEDLGFLPGDLEEKMEPYLRPIY 84 (205)
T ss_dssp HHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-----------T----SS---------TTTHHHH
T ss_pred HHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-----------ccccccCCCCHHHHHHHHHHHHH
Confidence 3567789999999999999844 3344432 44555588654 222333333211100
Q ss_pred ---------------ccCcceeeeeeecccCCcc--cEEEEecccccccccchhHHHHHHhhccc-ccccccCCchHHH
Q 003587 357 ---------------PFSNHIACTVEMVSTDEMY--DVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVLD 417 (809)
Q Consensus 357 ---------------~~~~~i~~tie~lt~~rlv--~~vVIDEAH~i~d~~~g~~~~~ill~l~~-~~i~l~~s~~~~~ 417 (809)
.....+...+.-.-.++.+ .+|||||||.+.- +.+..++..+.. ..+.+++++.-.+
T Consensus 85 d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~----~~~k~ilTR~g~~skii~~GD~~Q~D 159 (205)
T PF02562_consen 85 DALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP----EELKMILTRIGEGSKIIITGDPSQID 159 (205)
T ss_dssp HHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H----HHHHHHHTTB-TT-EEEEEE------
T ss_pred HHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH----HHHHHHHcccCCCcEEEEecCceeec
Confidence 0111122212112223333 8999999999983 366666666654 4566777765433
No 166
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.63 E-value=0.0045 Score=61.75 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=72.7
Q ss_pred HHhcCCCCEEEEec-hhHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecc--ccccccccc-
Q 003587 452 LRNVRSGDCVVAFS-RREIFEVKMAIEKHTN-HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD--AVGMGLNLN- 526 (809)
Q Consensus 452 l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g-~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATd--al~~GIDip- 526 (809)
+.+..+|.++|+|+ .+..+.+...+..... ....++.- ....+...++.|+ .++-.||+|+. .+..|||+|
T Consensus 4 l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~--~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 4 LISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFK--RGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHC--CSSSEEEEEETTSCCGSSS--EC
T ss_pred HHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHH--hccCeEEEEEecccEEEeecCCC
Confidence 34455688888885 5667777777654310 01123332 2456778999998 68888999998 999999995
Q ss_pred --ccEEEEcCCCCCCCC---------------------CcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 527 --IRRVVFYSLSKYNGD---------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 527 --V~~VI~~d~~K~dg~---------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
++.||..++|.-... -+.|.-+-...|-+||+=|...+ .|.++.+-.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD--YGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT---EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC--cEEEEEEcC
Confidence 899999998642111 12233345567999999998873 677776654
No 167
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.50 E-value=0.0035 Score=78.76 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=38.1
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH-----cCCcEEEEcccHhHHHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM-----EAKKGIYCSPLRLLAMEVFDK 337 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~-----~~~~~LvlsPtR~La~Q~~~~ 337 (809)
.+++.+++.||||+|||++||.+.+ .+.++||.++|+.|..|+..+
T Consensus 274 ~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 274 RDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred hcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 4678899999999999999877654 356778888999999998763
No 168
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.42 E-value=0.008 Score=69.72 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=50.4
Q ss_pred cchhHHhhCCCeEEEEcCCCChHHHH---HHHHHH--cCCcEEEEcccHhHHHHHHHHHHhcCCce
Q 003587 285 WFPFARVMKRKIIYHCGPTNSGKTYN---ALQRFM--EAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (809)
Q Consensus 285 ~~p~~~~l~grdviv~apTGSGKTl~---~L~~L~--~~~~~LvlsPtR~La~Q~~~~l~~~g~~~ 345 (809)
..++..+|++...|+.||+|+|||.. ++..+. .++.+|||+|....+.|+++.+.+.|+++
T Consensus 416 ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKV 481 (935)
T KOG1802|consen 416 SNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKV 481 (935)
T ss_pred HHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceE
Confidence 45666789999999999999999987 233333 46789999999999999999999988764
No 169
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.35 E-value=0.011 Score=70.74 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=41.2
Q ss_pred cchhHHhhCCCeEEEEcCCCChHHHH---HHHHHHc---C--CcEEEEcccHhHHHHHHHHHHh
Q 003587 285 WFPFARVMKRKIIYHCGPTNSGKTYN---ALQRFME---A--KKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 285 ~~p~~~~l~grdviv~apTGSGKTl~---~L~~L~~---~--~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
..++...+.++.+++.|++|+|||+. .+..+.+ + ..+++++||.-.|..+.+.+..
T Consensus 158 k~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 158 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 34555578889999999999999998 2333322 1 2456678999999998887764
No 170
>PRK10536 hypothetical protein; Provisional
Probab=96.33 E-value=0.0053 Score=65.12 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=59.3
Q ss_pred hhCCCeEEEEcCCCChHHHHHHH----HHHcCC-cEEEEc-ccHhHHHH-------HHHHHHhcCCc----eeeeecc-c
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQ----RFMEAK-KGIYCS-PLRLLAME-------VFDKVNALGVY----CSLLTGQ-E 352 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~----~L~~~~-~~Lvls-PtR~La~Q-------~~~~l~~~g~~----~~l~~g~-~ 352 (809)
+.++..+++.||+|+|||+.++. .+..+. ..+|++ |+...... +.+.+..+-.+ ...+.|. .
T Consensus 71 l~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~ 150 (262)
T PRK10536 71 IESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASF 150 (262)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHH
Confidence 46777899999999999998433 333332 335554 77654322 12222221100 0001111 1
Q ss_pred ccccccCcceeeeeeeccc----CCc--ccEEEEecccccccccchhHHHHHHhhcccc-cccccCCchHH
Q 003587 353 KKLVPFSNHIACTVEMVST----DEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVL 416 (809)
Q Consensus 353 ~~~~~~~~~i~~tie~lt~----~rl--v~~vVIDEAH~i~d~~~g~~~~~ill~l~~~-~i~l~~s~~~~ 416 (809)
...... .-...+++++. ++. -++|||||||++.- .....++..+... .+.+++++.-+
T Consensus 151 ~~~~~~--~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~----~~~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 151 MQYCLR--PEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA----AQMKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred HHHHHH--hccCcEEEecHHHhcCCcccCCEEEEechhcCCH----HHHHHHHhhcCCCCEEEEeCChhhc
Confidence 110000 00012333322 222 38999999999973 3455555555443 44566776543
No 171
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.30 E-value=0.018 Score=68.49 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=67.6
Q ss_pred hhHHhhCCCeEEEEcCCCChHHHH---HHHHHHc---C---CcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccc
Q 003587 287 PFARVMKRKIIYHCGPTNSGKTYN---ALQRFME---A---KKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357 (809)
Q Consensus 287 p~~~~l~grdviv~apTGSGKTl~---~L~~L~~---~---~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~ 357 (809)
++..++.++.+++.|+.|+|||+. .+..+.. . .++++++||--.|..+.+.+.........- .......+
T Consensus 153 A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-~~~~~~~~ 231 (586)
T TIGR01447 153 AVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-EALIAALP 231 (586)
T ss_pred HHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-hhhhhccc
Confidence 555678899999999999999997 2333321 1 357788899998888887775532111100 00000000
Q ss_pred -----cCcceeeee---eec---ccCCcccEEEEecccccccccchhHHHHHHhhccc-ccccccCCc
Q 003587 358 -----FSNHIACTV---EMV---STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDP 413 (809)
Q Consensus 358 -----~~~~i~~ti---e~l---t~~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~-~~i~l~~s~ 413 (809)
....+...+ ... .....+++||||||=|+.- ..+..++..++. .++.+++++
T Consensus 232 ~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 232 SEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred cccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcCCCCEEEEECCh
Confidence 000000000 000 0011279999999999873 245555665654 345556654
No 172
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.23 E-value=0.01 Score=72.21 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=34.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHH-----cCCcEEEEcccHhHHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNALQRFM-----EAKKGIYCSPLRLLAMEVFD 336 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~-----~~~~~LvlsPtR~La~Q~~~ 336 (809)
+.+++-||||+|||++||.+.+ .+.++||-+.|+.|-.|+..
T Consensus 50 ~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 50 RILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred ceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 6788999999999999876654 35667777799999999963
No 173
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.19 E-value=0.0055 Score=63.88 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=52.7
Q ss_pred EEEEcCCCChHHHHHHHHHHcCCcEEEEc---ccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeecccC-
Q 003587 297 IYHCGPTNSGKTYNALQRFMEAKKGIYCS---PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTD- 372 (809)
Q Consensus 297 viv~apTGSGKTl~~L~~L~~~~~~Lvls---PtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~lt~~- 372 (809)
+++.|+.|||||..+...+... ++++ |+.+++.+.. ..........+.+.++....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~s~~~~~~~~ 60 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR---LVVTVISPTIELYTEWL-----------------PDPPSKSVRTVDSFLKALVKP 60 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc---cccccccccceeccccc-----------------cccCCccccEEeEhhhccccc
Confidence 4789999999999865555544 3333 4444443333 00000111112222222221
Q ss_pred CcccEEEEecccccccccchhHHHHHHhhcccccccccCCchH
Q 003587 373 EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV 415 (809)
Q Consensus 373 rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~~i~l~~s~~~ 415 (809)
...+.+||||++++. +|.... ++....+..+.++|+|.-
T Consensus 61 ~~~~~liiDE~~~~~---~g~l~~-l~~~~~~~~~~l~GDp~Q 99 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLP---PGYLLL-LLSLSPAKNVILFGDPLQ 99 (234)
T ss_pred CcCCEEEEeccccCC---hHHHHH-HHhhccCcceEEEECchh
Confidence 237999999999987 344433 444455567777888753
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.14 E-value=0.0076 Score=62.11 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=40.7
Q ss_pred hhHHhhCCCe-EEEEcCCCChHHHH---HHHHH---------HcCCcEEEEcccHhHHHHHHHHHHh
Q 003587 287 PFARVMKRKI-IYHCGPTNSGKTYN---ALQRF---------MEAKKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 287 p~~~~l~grd-viv~apTGSGKTl~---~L~~L---------~~~~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
++..++.... .++.||.|+|||.. ++..+ ..++.+|+++|+...+.++.+++.+
T Consensus 9 Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 9 AIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3444677777 99999999999976 33333 2345789999999999999999988
No 175
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.10 E-value=0.03 Score=70.53 Aligned_cols=118 Identities=15% Similarity=0.217 Sum_probs=82.5
Q ss_pred hcCCCCEEEEec-hhHHHHHHHHHHHhcCC-eEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc---cc
Q 003587 454 NVRSGDCVVAFS-RREIFEVKMAIEKHTNH-HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IR 528 (809)
Q Consensus 454 ~~~~g~~II~fs-rk~~~~l~~~L~~~~g~-~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip---V~ 528 (809)
...+|.++|+|+ .+....++..|...... ....+.-++....|.++++.|+ .++-.||++|..+..|||+| ++
T Consensus 749 ~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~--~~~~~iLlG~~sFwEGVD~pg~~l~ 826 (928)
T PRK08074 749 KATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQ--QFDKAILLGTSSFWEGIDIPGDELS 826 (928)
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHH--hcCCeEEEecCcccCccccCCCceE
Confidence 345677888885 57777888888653221 1222322444456788999998 67778999999999999996 79
Q ss_pred EEEEcCCCCCC----------------CC-----CcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 529 RVVFYSLSKYN----------------GD-----KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 529 ~VI~~d~~K~d----------------g~-----~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
.||...++--. |. ...|.-+-.+.|-+||.=|.... .|.++.+-.
T Consensus 827 ~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D--~G~v~ilD~ 892 (928)
T PRK08074 827 CLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETD--RGTVFVLDR 892 (928)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCc--eEEEEEecC
Confidence 99999875311 11 12344566779999999998863 788777754
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.10 E-value=0.079 Score=64.26 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=68.7
Q ss_pred cCCCCEEEEech--hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc----cc
Q 003587 455 VRSGDCVVAFSR--REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN----IR 528 (809)
Q Consensus 455 ~~~g~~II~fsr--k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip----V~ 528 (809)
+..|..|++-+. ...+.+.+.|.+. |+.-.++.+.-. .|+..+-.+. ...--|=|||+.+|||-||- ..
T Consensus 426 ~~~gqPvLvgT~sie~SE~ls~~L~~~-~i~h~VLNAk~h--~~EA~Iia~A--G~~gaVTiATNMAGRGTDIkLg~~~~ 500 (822)
T COG0653 426 HEKGQPVLVGTVSIEKSELLSKLLRKA-GIPHNVLNAKNH--AREAEIIAQA--GQPGAVTIATNMAGRGTDIKLGGNPE 500 (822)
T ss_pred HhcCCCEEEcCcceecchhHHHHHHhc-CCCceeeccccH--HHHHHHHhhc--CCCCccccccccccCCcccccCCCHH
Confidence 455666666653 5667777777664 777777777655 4444444443 12336889999999999982 32
Q ss_pred --------EEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecccHHHH
Q 003587 529 --------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (809)
Q Consensus 529 --------~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d~~~l 581 (809)
+||=... --|..-=-|..||+||-|. .|..-.|.+-++.-+
T Consensus 501 ~V~~lGGL~VIgTER---------hESRRIDnQLRGRsGRQGD---pG~S~F~lSleD~L~ 549 (822)
T COG0653 501 FVMELGGLHVIGTER---------HESRRIDNQLRGRAGRQGD---PGSSRFYLSLEDDLM 549 (822)
T ss_pred HHHHhCCcEEEeccc---------chhhHHHHHhhcccccCCC---cchhhhhhhhHHHHH
Confidence 3333322 1222223489999999997 787777766444333
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.08 E-value=0.0031 Score=58.65 Aligned_cols=37 Identities=32% Similarity=0.369 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCChHHHHHH--HHHHcCC--cEEEEcccHhH
Q 003587 294 RKIIYHCGPTNSGKTYNAL--QRFMEAK--KGIYCSPLRLL 330 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L--~~L~~~~--~~LvlsPtR~L 330 (809)
++.++++||+|+|||+.+. ....... .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 5689999999999999843 3333333 47777665443
No 178
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.05 E-value=0.029 Score=69.85 Aligned_cols=112 Identities=22% Similarity=0.254 Sum_probs=84.6
Q ss_pred CCCC--EEEEech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEE
Q 003587 456 RSGD--CVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVV 531 (809)
Q Consensus 456 ~~g~--~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI 531 (809)
..|. .+++|+. .....+.....+..++....++|.++.+.|...++.|+++.+..-++++|-+.|.|+|+- .++||
T Consensus 707 ~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi 786 (866)
T COG0553 707 EEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVI 786 (866)
T ss_pred hhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEE
Confidence 3454 5666653 455554444444446789999999999999999999995334666777888999999995 99999
Q ss_pred EcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 532 ~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
++|. +.+++...|...||-|-|.. ..=.++.|+..+
T Consensus 787 ~~d~---------~wnp~~~~Qa~dRa~RigQ~-~~v~v~r~i~~~ 822 (866)
T COG0553 787 LFDP---------WWNPAVELQAIDRAHRIGQK-RPVKVYRLITRG 822 (866)
T ss_pred Eecc---------ccChHHHHHHHHHHHHhcCc-ceeEEEEeecCC
Confidence 9998 78999999999999998872 234566666544
No 179
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.04 E-value=0.0039 Score=58.71 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=12.5
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
+++.+++.||+|+|||..
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 356789999999999998
No 180
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.95 E-value=0.054 Score=66.43 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=77.0
Q ss_pred CCCEEEEech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccccccc-cccEEEEcC
Q 003587 457 SGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVVFYS 534 (809)
Q Consensus 457 ~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDi-pV~~VI~~d 534 (809)
.|..+++||. ....++...+....|+-..-+.|...-++|...++.|+....-...|.+|-.-|.|||+ ..+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 4556777765 45555555555556888889999999999999999998523335567889999999999 599999999
Q ss_pred CCCCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEeccc
Q 003587 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~d 577 (809)
-.. |+. .-.-..+..||||++ . .=++|.|+++.
T Consensus 1355 sDw-NPt--MDaQAQDrChRIGqt---R----DVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1355 SDW-NPT--MDAQAQDRCHRIGQT---R----DVHIYRLISER 1387 (1958)
T ss_pred CCC-Cch--hhhHHHHHHHhhcCc---c----ceEEEEeeccc
Confidence 621 100 011233445556554 3 36789998753
No 181
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.93 E-value=0.018 Score=61.74 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=64.7
Q ss_pred CccchhHHhhCCCeEEEEcCCCChHHHH-HHHHH---HcCCcEEEEcccHhHHHHHHHHHHh----cCCceeeeeccccc
Q 003587 283 HTWFPFARVMKRKIIYHCGPTNSGKTYN-ALQRF---MEAKKGIYCSPLRLLAMEVFDKVNA----LGVYCSLLTGQEKK 354 (809)
Q Consensus 283 t~~~p~~~~l~grdviv~apTGSGKTl~-~L~~L---~~~~~~LvlsPtR~La~Q~~~~l~~----~g~~~~l~~g~~~~ 354 (809)
+|.+....+.+|+ |+.+.||=|||++ ++++. +.+..+=|++..--||..=++.+.. +|+.++++++....
T Consensus 81 vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~ 158 (266)
T PF07517_consen 81 VQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSS 158 (266)
T ss_dssp HHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEH
T ss_pred HHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCH
Confidence 3344444455666 8999999999998 33333 2566777888999999887777665 58888887776442
Q ss_pred cc---c-cCcceeeeeee-----c----------ccCCcccEEEEecccccc
Q 003587 355 LV---P-FSNHIACTVEM-----V----------STDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 355 ~~---~-~~~~i~~tie~-----l----------t~~rlv~~vVIDEAH~i~ 387 (809)
.. . ....+++|..- + .-.+.+.++||||||.++
T Consensus 159 ~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 159 EERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 21 1 23344555311 0 012337999999999886
No 182
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.92 E-value=0.019 Score=70.24 Aligned_cols=115 Identities=19% Similarity=0.174 Sum_probs=62.4
Q ss_pred hhHHhhCCCeEEEEcCCCChHHHH--H-HHHHHcC---CcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCc
Q 003587 287 PFARVMKRKIIYHCGPTNSGKTYN--A-LQRFMEA---KKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN 360 (809)
Q Consensus 287 p~~~~l~grdviv~apTGSGKTl~--~-L~~L~~~---~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~ 360 (809)
++..+..++.+++.|+.|+|||+. + +..+... ..+++++||--.|..+.+.. |..+.-+..-... .. ..
T Consensus 331 Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~---g~~a~Tih~lL~~-~~-~~ 405 (720)
T TIGR01448 331 ALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT---GLTASTIHRLLGY-GP-DT 405 (720)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc---CCccccHHHHhhc-cC-Cc
Confidence 444457788999999999999997 2 3333333 34666789998887665432 3222111100000 00 00
Q ss_pred ceeeeeeecccCCcccEEEEecccccccccchhHHHHHHhhcccc-cccccCCc
Q 003587 361 HIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDP 413 (809)
Q Consensus 361 ~i~~tie~lt~~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~~-~i~l~~s~ 413 (809)
. .. .........++||||||+|+... .+...+..++.. ++.+++++
T Consensus 406 ~--~~-~~~~~~~~~~llIvDEaSMvd~~----~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 406 F--RH-NHLEDPIDCDLLIVDESSMMDTW----LALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred c--ch-hhhhccccCCEEEEeccccCCHH----HHHHHHHhCCCCCEEEEECcc
Confidence 0 00 00011112689999999999742 344455555432 45555654
No 183
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.74 E-value=0.015 Score=70.56 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=70.6
Q ss_pred hcCCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc---ccE
Q 003587 454 NVRSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IRR 529 (809)
Q Consensus 454 ~~~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip---V~~ 529 (809)
...+|.++|+|+. +....++..+...........+|..+.. ..++.|+. .++..++|+|..+..|||+| .+.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~-~~~~~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKA-SGEGLILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHH-hcCCeEEEeeccccCcccCCCCCeeE
Confidence 3455667777754 5566666666543111244555555444 66777763 22227888888888888884 678
Q ss_pred EEEcCCCCC-------------------CCC--CcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 530 VVFYSLSKY-------------------NGD--KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 530 VI~~d~~K~-------------------dg~--~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
||..+++-- +|. .+.|..+-.+.|-+||+=|.-. ..|.++.+-.
T Consensus 552 vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~--D~G~ivllD~ 616 (654)
T COG1199 552 VVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSED--DRGVIVLLDK 616 (654)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCC--CceEEEEecc
Confidence 888776531 111 2445566677888888888554 3677777654
No 184
>PRK04296 thymidine kinase; Provisional
Probab=95.74 E-value=0.0061 Score=62.12 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcc
Q 003587 294 RKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSP 326 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsP 326 (809)
|..+++.||+|+|||+.++..+. .+.+++|+.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 56789999999999988554443 3456677766
No 185
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.42 E-value=0.096 Score=63.57 Aligned_cols=49 Identities=22% Similarity=0.220 Sum_probs=40.1
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH-----cCCcEEEEcccHhHHHHHHHHHHh
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM-----EAKKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~-----~~~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
..++.+++.||||+|||+++|.+.+ .+.++||.++|+.|..|+.++...
T Consensus 32 ~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 32 KGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred cCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 4556699999999999999776654 236888899999999999887654
No 186
>PRK06526 transposase; Provisional
Probab=95.27 E-value=0.023 Score=60.63 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=28.1
Q ss_pred hCCCeEEEEcCCCChHHHHHH---HHHHcCCcEEEEcccHhHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNAL---QRFMEAKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L---~~L~~~~~~LvlsPtR~La~Q~~ 335 (809)
-.+++++++||+|+|||..+. ..+...+..++......|+.++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 457799999999999998732 23334444444444445555554
No 187
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.0071 Score=65.03 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=22.6
Q ss_pred hCCCeEEEEcCCCChHHHH--HHHHHHcCCcE
Q 003587 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEAKKG 321 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~L~~L~~~~~~ 321 (809)
++.-+++++||||||||+. .|..++.-|-+
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 6677999999999999987 35555554433
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.17 E-value=0.033 Score=52.26 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.1
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.++.+++.||+|+|||..
T Consensus 18 ~~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999987
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.13 E-value=0.022 Score=66.01 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=41.1
Q ss_pred HhhCC-CeEEEEcCCCChHHHH----HHHHHHcCCcEEEEcccHhHHHHHHHHHH
Q 003587 290 RVMKR-KIIYHCGPTNSGKTYN----ALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 290 ~~l~g-rdviv~apTGSGKTl~----~L~~L~~~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
..++. .-.++.||+|+|||.. ..+.+..+.++|||+||.+.+..+.+++.
T Consensus 196 ~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 196 FAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 34555 4577889999999987 45566688899999999999999999876
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.13 E-value=0.041 Score=66.34 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=42.7
Q ss_pred hhCC-CeEEEEcCCCChHHHHHH----HHHHcCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 291 VMKR-KIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 291 ~l~g-rdviv~apTGSGKTl~~L----~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
++.. ..+++.||+|+|||.... +.+..+.++++++||...+.++.+++...+..
T Consensus 169 ~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~ 227 (637)
T TIGR00376 169 ALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQK 227 (637)
T ss_pred HhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCc
Confidence 4544 678899999999998732 33345678999999999999999999876443
No 191
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.033 Score=59.46 Aligned_cols=79 Identities=15% Similarity=0.102 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeec
Q 003587 293 KRKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~---~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~l 369 (809)
+++++++.||+|+|||+. +...+...|..++++++-+|+.++............+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l---------------------~ 162 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKL---------------------L 162 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHH---------------------H
Confidence 788999999999999987 2345556778888899999999998877651000000 0
Q ss_pred ccCCcccEEEEecccccccccch
Q 003587 370 STDEMYDVAVIDEIQMMSDACRG 392 (809)
Q Consensus 370 t~~rlv~~vVIDEAH~i~d~~~g 392 (809)
..-..++++||||.=......|+
T Consensus 163 ~~l~~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 163 RELKKVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred HHhhcCCEEEEecccCccCCHHH
Confidence 00112799999999876543343
No 192
>PRK12377 putative replication protein; Provisional
Probab=95.09 E-value=0.047 Score=58.10 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCChHHHH---HHHHHHcCCcEEEEcccHhHHHHHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 294 grdviv~apTGSGKTl~---~L~~L~~~~~~LvlsPtR~La~Q~~~~l 338 (809)
...+++.||+|+|||.. +...+...+..+++.+..+|+.++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHH
Confidence 35799999999999976 2344555566566667778888776654
No 193
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.07 E-value=0.1 Score=61.16 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=80.6
Q ss_pred CEEEEec-hhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCCC
Q 003587 459 DCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS 536 (809)
Q Consensus 459 ~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~~ 536 (809)
.++++|- .+.+.-+-.+|.- .++.-..+.|......|..+...|.. ....-.|++|-+.|-|||+- .+.||+||.
T Consensus 1046 RvL~yfQMTkM~dl~EdYl~y-r~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdS- 1122 (1185)
T KOG0388|consen 1046 RVLMYFQMTKMIDLIEDYLVY-RGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDS- 1122 (1185)
T ss_pred eEEehhHHHHHHHHHHHHHHh-hccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecC-
Confidence 4555664 4555555566654 48999999999999999999999985 66777899999999999996 999999997
Q ss_pred CCCCCCcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
-.++..=.|-.-||-|-|.. ..-.+|.++..
T Consensus 1123 --------DWNPT~D~QAMDRAHRLGQT-rdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1123 --------DWNPTADQQAMDRAHRLGQT-RDVTVYRLITR 1153 (1185)
T ss_pred --------CCCcchhhHHHHHHHhccCc-cceeeeeeccc
Confidence 33555556777788887762 23456777653
No 194
>PRK08181 transposase; Validated
Probab=94.98 E-value=0.069 Score=57.48 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=30.7
Q ss_pred hCCCeEEEEcCCCChHHHH--H-HHHHHcCCcEEEEcccHhHHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN--A-LQRFMEAKKGIYCSPLRLLAMEVFD 336 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~-L~~L~~~~~~LvlsPtR~La~Q~~~ 336 (809)
-.+++++++||+|+|||.. + ...+...+..++..+..+|+.++..
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH
Confidence 4678999999999999976 2 2233444555555566677777654
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.94 E-value=0.058 Score=57.24 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=45.6
Q ss_pred CeEEEEcCCCChHHHH---HHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeeccc
Q 003587 295 KIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVST 371 (809)
Q Consensus 295 rdviv~apTGSGKTl~---~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~lt~ 371 (809)
..+++.|++|+|||.. +...+...+..+++.+...|+..+...+..- ..... .++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~--------~~~~~------------~~l~~ 159 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS--------ETSEE------------QLLND 159 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhc--------cccHH------------HHHHH
Confidence 4789999999999976 2334445455555556666665555443210 00000 00000
Q ss_pred CCcccEEEEecccccccccchh
Q 003587 372 DEMYDVAVIDEIQMMSDACRGY 393 (809)
Q Consensus 372 ~rlv~~vVIDEAH~i~d~~~g~ 393 (809)
-..++++||||+++.....|+.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~ 181 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEK 181 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHH
Confidence 1127999999999987544444
No 196
>PRK08727 hypothetical protein; Validated
Probab=94.91 E-value=0.057 Score=56.84 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=22.0
Q ss_pred CeEEEEcCCCChHHHH--H-HHHHHc-CCcEEEEcccHhHH
Q 003587 295 KIIYHCGPTNSGKTYN--A-LQRFME-AKKGIYCSPLRLLA 331 (809)
Q Consensus 295 rdviv~apTGSGKTl~--~-L~~L~~-~~~~LvlsPtR~La 331 (809)
..+++.||+|+|||+. + ...+.+ +.+++|+ |..++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~-~~~~~~ 81 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL-PLQAAA 81 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-eHHHhh
Confidence 4589999999999976 2 223333 3455554 443333
No 197
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.19 Score=57.47 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=69.4
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccc--cccccc-cccEEEEcC
Q 003587 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV--GMGLNL-NIRRVVFYS 534 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal--~~GIDi-pV~~VI~~d 534 (809)
.++|+. +--+-..+...+.+. ++....+|---+...-.++-..|- .|...||+-|.-+ =+--+| .|+.||+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e-~i~F~~i~EYssk~~vsRAR~lF~--qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKE-EISFVMINEYSSKSKVSRARELFF--QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhh-hcchHHHhhhhhHhhhhHHHHHHH--hcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 344444 556666777777665 455555553333333344556777 7999999999643 355677 499999999
Q ss_pred CCCCCCCCcccCCHhHHHHHHcccCCCCCC-CCceEEEEEeccc
Q 003587 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSI-YPDGLTTTLNLDD 577 (809)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~-~~~G~~i~~~~~d 577 (809)
++.+ |.=..+++.+.||+.--|.. ...-.|.++|+.-
T Consensus 631 pP~~------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 631 PPNN------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred CCCC------cHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 9443 44456667778877554421 1235677788753
No 198
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=94.70 E-value=0.052 Score=58.78 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH----HcC----CcEEEEcccHhHHHHHHHHHHhc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRF----MEA----KKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L----~~~----~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
....++|.|..|||||.+.+..+ ... ...|++++|+..|.++.+++...
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHh
Confidence 57789999999999999855433 222 36899999999999999999873
No 199
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.69 E-value=0.21 Score=60.97 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=78.4
Q ss_pred CCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhc--CCCCeEEEEeccccccccccc---ccE
Q 003587 456 RSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND--QDNEFDVLVASDAVGMGLNLN---IRR 529 (809)
Q Consensus 456 ~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~--~~g~~~ILVATdal~~GIDip---V~~ 529 (809)
.+|.++|+| |.+....++..|....+.. ...+|.. .|..+++.|+. ..++-.||++|..+..|||+| .+.
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 445577777 5677788888886543443 4446643 46678877762 135678999999999999995 899
Q ss_pred EEEcCCCCCCCC---------------------CcccCCHhHHHHHHcccCCCCCCCCceEEEEEec
Q 003587 530 VVFYSLSKYNGD---------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 530 VI~~d~~K~dg~---------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~ 575 (809)
||...++--.+. -..|.-+-.+.|-+||.=|.... .|.++.+-.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D--~G~i~ilD~ 673 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQD--RGRVTILDR 673 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCc--eEEEEEEcc
Confidence 999997632111 01233455678999999998763 788777754
No 200
>PF13173 AAA_14: AAA domain
Probab=94.65 E-value=0.12 Score=48.94 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH---cCCcEEEEc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM---EAKKGIYCS 325 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~---~~~~~Lvls 325 (809)
+++.+++.||.|+|||+.+.+.+. .....+++.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~ 36 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYIN 36 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeec
Confidence 367899999999999998544443 234556653
No 201
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.54 E-value=0.05 Score=54.53 Aligned_cols=48 Identities=27% Similarity=0.368 Sum_probs=34.7
Q ss_pred EEEEcCCCChHHHHHHHH----HHcCCcEEEEcccHhHHHHHHHHHHhcCCce
Q 003587 297 IYHCGPTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (809)
Q Consensus 297 viv~apTGSGKTl~~L~~----L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~ 345 (809)
+++.||+|+|||..+++. +..+..++|++ +-+...++.+++..+|...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s-~e~~~~~~~~~~~~~g~~~ 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT-LEESPEELIENAESLGWDL 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCHHHHHHHHHHcCCCh
Confidence 689999999999975443 33456777775 4566778888888777653
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.077 Score=60.05 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=50.4
Q ss_pred hCCCeEEEEcCCCChHHHHH--HHH-HH-----cCCcEEEEc--ccHhHHHHHHHHHHh-cCCceeeeecccccccccCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNA--LQR-FM-----EAKKGIYCS--PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSN 360 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~--L~~-L~-----~~~~~Lvls--PtR~La~Q~~~~l~~-~g~~~~l~~g~~~~~~~~~~ 360 (809)
...+.++++||||+|||+++ |.. +. .+.++.+++ +.|.-+.++...+.. +|+++... .......
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~--~~~~~l~--- 246 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAI--ESFKDLK--- 246 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEee--CcHHHHH---
Confidence 34578999999999999983 222 11 234454444 888888877776655 56654321 1111000
Q ss_pred ceeeeeeecccCCcccEEEEecccccc
Q 003587 361 HIACTVEMVSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 361 ~i~~tie~lt~~rlv~~vVIDEAH~i~ 387 (809)
..+.....+++|+||++.+..
T Consensus 247 ------~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 ------EEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred ------HHHHHhCCCCEEEEcCCCCCc
Confidence 001111237999999999875
No 203
>PRK06921 hypothetical protein; Provisional
Probab=94.50 E-value=0.057 Score=58.10 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHHHcC-CcEEEEcccHhHHHHHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN---ALQRFMEA-KKGIYCSPLRLLAMEVFDK 337 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~---~L~~L~~~-~~~LvlsPtR~La~Q~~~~ 337 (809)
.+..+++.||||+|||.. +...+... +..++..+..+|..++...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~ 164 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD 164 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH
Confidence 467899999999999976 23344443 4444445556666655443
No 204
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.42 E-value=0.053 Score=66.36 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=41.4
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHH----H-cC--CcEEEEcccHhHHHHHHHHHHhc
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRF----M-EA--KKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L----~-~~--~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
+..|+..++.+|||+|||++.|-+. . .+ ++++|++.|..=..|+.+++++.
T Consensus 26 l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 26 LDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred hccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 3678899999999999999944333 3 22 57899999999999999999883
No 205
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.02 E-value=0.33 Score=47.07 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=59.7
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc---ccEEEEcCCCCCCCC------------------C-
Q 003587 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IRRVVFYSLSKYNGD------------------K- 542 (809)
Q Consensus 485 ~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip---V~~VI~~d~~K~dg~------------------~- 542 (809)
.++.-+....+...+++.|+. .++..||+||.-+..|||+| .+.||..++|-.+.. .
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~-~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~ 103 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVE-ACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPF 103 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHH-cCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCch
Confidence 344444555567889999983 33337999998899999995 789999997642111 0
Q ss_pred ---cccCCHhHHHHHHcccCCCCCCCCceEEEEE
Q 003587 543 ---IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573 (809)
Q Consensus 543 ---~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~ 573 (809)
..|...-...|-+||+=|.... .|.++.+
T Consensus 104 ~~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~l~ 135 (141)
T smart00492 104 DFVSLPDAMRTLAQCVGRLIRGAND--YGVVVIA 135 (141)
T ss_pred hHHHHHHHHHHHHHHhCccccCcCc--eEEEEEE
Confidence 1133456678999999998763 6766655
No 206
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.98 E-value=0.28 Score=58.79 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=82.6
Q ss_pred hcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcC--CCCeEEEEecccccccccc-----
Q 003587 454 NVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ--DNEFDVLVASDAVGMGLNL----- 525 (809)
Q Consensus 454 ~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~--~g~~~ILVATdal~~GIDi----- 525 (809)
....|.++|.| |.+....++..|..... ..+.+.|..+ .|...++.|+.. .+...||++|+.+-.|||+
T Consensus 467 ~~~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~ 543 (636)
T TIGR03117 467 RKAQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPV 543 (636)
T ss_pred HHcCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccC
Confidence 44556666666 57888889988876544 3355566554 344678888830 2468999999999999999
Q ss_pred ---c---ccEEEEcCCCC-CC------------CC---CcccCCHhHHHHHHcccCCCCCCCCceEEEEEecc
Q 003587 526 ---N---IRRVVFYSLSK-YN------------GD---KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (809)
Q Consensus 526 ---p---V~~VI~~d~~K-~d------------g~---~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~~~ 576 (809)
| +..||...++- .+ |. ...|...-.+.|-+||-=|.......|.++.+-+.
T Consensus 544 ~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 544 SPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 89999888752 10 11 23354556678999999998762226888887755
No 207
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=93.96 E-value=0.13 Score=63.78 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=36.0
Q ss_pred CeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCC
Q 003587 509 EFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561 (809)
Q Consensus 509 ~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~ 561 (809)
..+.|++-.++..|.|.| |-.++-... ..|...-.|.+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~---------~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRS---------SGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEecc---------CCchHHHHHHhccceec
Confidence 789999999999999999 555555554 45777889999999984
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=93.96 E-value=0.14 Score=56.99 Aligned_cols=114 Identities=18% Similarity=0.155 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCChHHHHH---HHHHHcC-CcEEEEc--ccHhHHH-HHHHHHHhcCCceeeeecccccccccCcceeeee
Q 003587 294 RKIIYHCGPTNSGKTYNA---LQRFMEA-KKGIYCS--PLRLLAM-EVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTV 366 (809)
Q Consensus 294 grdviv~apTGSGKTl~~---L~~L~~~-~~~Lvls--PtR~La~-Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~ti 366 (809)
...++++||+|+|||+.+ ...+... .+++++. +.|.-+. |.......+|+++. .+.. +..+ ...+.-.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~--~~~~-g~dp-~~v~~~ai 215 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI--KHKY-GADP-AAVAYDAI 215 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee--cccC-CCCH-HHHHHHHH
Confidence 457899999999999872 2233333 3555554 4555554 44445555565432 1111 1000 00000111
Q ss_pred eecccCCcccEEEEeccccccc-ccchhHHHHHHhhcccccccccCC
Q 003587 367 EMVSTDEMYDVAVIDEIQMMSD-ACRGYAWTRALLGLMADEIHLCGD 412 (809)
Q Consensus 367 e~lt~~rlv~~vVIDEAH~i~d-~~~g~~~~~ill~l~~~~i~l~~s 412 (809)
+.+.. +.+++|+||.|.++.. ...-..+..+...+.+..+.++.+
T Consensus 216 ~~~~~-~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 216 EHAKA-RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred HHHHh-CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeec
Confidence 22211 2278999999999852 212223333333344444444433
No 209
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.78 E-value=0.1 Score=60.61 Aligned_cols=54 Identities=31% Similarity=0.322 Sum_probs=46.2
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHHH----------cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRFM----------EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L~----------~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
--.++.++|.|..|||||.++|..+. .++.++|+.|.+.++.=+...|-++|..
T Consensus 223 ~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 223 FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 45688999999999999999888764 3456899999999999999999988764
No 210
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.68 E-value=0.21 Score=51.78 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=16.3
Q ss_pred CCCeEEEEcCCCChHHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~ 311 (809)
.+..+++.||+|+|||+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999873
No 211
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.65 E-value=0.2 Score=52.80 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
+..+++.||+|+|||..
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999976
No 212
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.51 E-value=0.17 Score=62.21 Aligned_cols=89 Identities=20% Similarity=0.133 Sum_probs=51.5
Q ss_pred hhHHhhC-CCeEEEEcCCCChHHHH--HHHH-HH-cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcc
Q 003587 287 PFARVMK-RKIIYHCGPTNSGKTYN--ALQR-FM-EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNH 361 (809)
Q Consensus 287 p~~~~l~-grdviv~apTGSGKTl~--~L~~-L~-~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~ 361 (809)
++..++. ++.+++.|+.|+|||+. ++.. +. .+..+++++||--.|..+.+. .|+...-+..-...... .
T Consensus 360 Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~---~g~~a~Ti~~~~~~~~~-~-- 433 (744)
T TIGR02768 360 AVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE---SGIESRTLASLEYAWAN-G-- 433 (744)
T ss_pred HHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc---cCCceeeHHHHHhhhcc-C--
Confidence 4444555 57889999999999987 3332 22 355778889998877666542 23332211110000000 0
Q ss_pred eeeeeeecccCCcccEEEEeccccccc
Q 003587 362 IACTVEMVSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 362 i~~tie~lt~~rlv~~vVIDEAH~i~d 388 (809)
..+....++||||||-|+..
T Consensus 434 -------~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 434 -------RDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred -------cccCCCCcEEEEECcccCCH
Confidence 00011269999999999975
No 213
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.36 E-value=0.26 Score=54.69 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHHHcCCcEEEEcccHhHHHHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFD 336 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~---~L~~L~~~~~~LvlsPtR~La~Q~~~ 336 (809)
.++.+++.||||+|||+. +...+...+..++..+...|+.++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 357899999999999976 33445555655666666677666644
No 214
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.19 E-value=0.18 Score=52.64 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=14.3
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+|..||.|.|||+.+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6899999999999874
No 215
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.10 E-value=0.1 Score=50.25 Aligned_cols=31 Identities=42% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHH----HHcCCcEEEEccc
Q 003587 297 IYHCGPTNSGKTYNALQR----FMEAKKGIYCSPL 327 (809)
Q Consensus 297 viv~apTGSGKTl~~L~~----L~~~~~~LvlsPt 327 (809)
+++.||+|+|||..+... ...++.++++..-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 678999999999873222 2235666776643
No 216
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.02 E-value=0.42 Score=53.96 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCCChHHHHH--HH-HHH-cCCcEEEE-c-ccHhHHHHHHHHH-HhcCCceeeeecccccccccCcceeee
Q 003587 293 KRKIIYHCGPTNSGKTYNA--LQ-RFM-EAKKGIYC-S-PLRLLAMEVFDKV-NALGVYCSLLTGQEKKLVPFSNHIACT 365 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~--L~-~L~-~~~~~Lvl-s-PtR~La~Q~~~~l-~~~g~~~~l~~g~~~~~~~~~~~i~~t 365 (809)
..+.++++||||+|||+.+ |. .+. .+.++.++ + |-|.-+.++.... ...|+++.. ..... .+.-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v--~~d~~------~L~~a 311 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA------AMTRA 311 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEe--cCCHH------HHHHH
Confidence 3578999999999999882 11 222 33344444 4 7776555554443 333433321 11110 01011
Q ss_pred eeecccCCcccEEEEecccccc
Q 003587 366 VEMVSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 366 ie~lt~~rlv~~vVIDEAH~i~ 387 (809)
+..+.....+++|+||-+=+..
T Consensus 312 L~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 312 LTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHhccCCCEEEEeCccccC
Confidence 1112211127999999987654
No 217
>PRK08116 hypothetical protein; Validated
Probab=92.82 E-value=0.26 Score=53.04 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=30.7
Q ss_pred CCeEEEEcCCCChHHHH---HHHHHHcCCcEEEEcccHhHHHHHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 294 grdviv~apTGSGKTl~---~L~~L~~~~~~LvlsPtR~La~Q~~~~l 338 (809)
+.-+++.|++|+|||+. +...+...+..++..+..+|+.++...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTY 161 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 34599999999999987 3344554455566666677776665544
No 218
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.78 E-value=0.11 Score=58.43 Aligned_cols=43 Identities=21% Similarity=0.459 Sum_probs=32.9
Q ss_pred hCCCeEEEEcCCCChHHHH--HHHHHHc--CCcEEEEcccHhHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN--ALQRFME--AKKGIYCSPLRLLAMEV 334 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~L~~L~~--~~~~LvlsPtR~La~Q~ 334 (809)
.++..+++.||-|+|||+. ++...+. +..+++++||-..|..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 4677899999999999998 4444443 34678888998877666
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.75 E-value=0.19 Score=51.58 Aligned_cols=113 Identities=24% Similarity=0.257 Sum_probs=56.0
Q ss_pred CeEEEEcCCCChHHHHH----HHHHHcCCcE-EEEc-ccHhHHHHHHHHHHh-cCCceeeee-cccccccccCcceeeee
Q 003587 295 KIIYHCGPTNSGKTYNA----LQRFMEAKKG-IYCS-PLRLLAMEVFDKVNA-LGVYCSLLT-GQEKKLVPFSNHIACTV 366 (809)
Q Consensus 295 rdviv~apTGSGKTl~~----L~~L~~~~~~-Lvls-PtR~La~Q~~~~l~~-~g~~~~l~~-g~~~~~~~~~~~i~~ti 366 (809)
+.++++||||+|||+++ ......+.++ +|.+ ..|.=|.+|.+.+.+ +|+++.... ....... ..-.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~-----~~~~l 76 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEI-----AREAL 76 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHH-----HHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHH-----HHHHH
Confidence 36889999999999982 2222344444 4444 778888777777655 355432211 1100000 00011
Q ss_pred eecccCCcccEEEEecccccccc-cchhHHHHHHhhcccccccccCCc
Q 003587 367 EMVSTDEMYDVAVIDEIQMMSDA-CRGYAWTRALLGLMADEIHLCGDP 413 (809)
Q Consensus 367 e~lt~~rlv~~vVIDEAH~i~d~-~~g~~~~~ill~l~~~~i~l~~s~ 413 (809)
+.+.. +.+++|+||-+-+.... ..-..+...+..+.+.+++++.++
T Consensus 77 ~~~~~-~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa 123 (196)
T PF00448_consen 77 EKFRK-KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSA 123 (196)
T ss_dssp HHHHH-TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEG
T ss_pred HHHhh-cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEec
Confidence 11111 12789999998766421 111233344444445556655444
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.096 Score=60.52 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=14.2
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-++++||.|+|||..+
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999984
No 221
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=92.61 E-value=0.42 Score=58.05 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=66.5
Q ss_pred CeEEEEeCCCCHHHHHHHHHHhhcCCC--CeEEEEecccccccccc-cccEEEEcCCCCCCCCCcccCCHhHHHHHHccc
Q 003587 482 HHCCVIYGALPPETRRQQANLFNDQDN--EFDVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRA 558 (809)
Q Consensus 482 ~~v~~lhg~l~~~~R~~~~~~F~~~~g--~~~ILVATdal~~GIDi-pV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRA 558 (809)
..-..+.|......|......|++|.+ ..-.||+|-|.+-|||+ -..+||++|. ..++.-=.|-+=|+
T Consensus 1189 kDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa---------sWNPSyDtQSIFRv 1259 (1567)
T KOG1015|consen 1189 KDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA---------SWNPSYDTQSIFRV 1259 (1567)
T ss_pred CceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec---------ccCCccchHHHHHH
Confidence 445667899999999999999987443 24579999999999999 5999999998 44666677888899
Q ss_pred CCCCCCCCceEEEEEec
Q 003587 559 GRRGSIYPDGLTTTLNL 575 (809)
Q Consensus 559 GR~G~~~~~G~~i~~~~ 575 (809)
=|+|.. ..-++|.|+.
T Consensus 1260 yRfGQt-KPvyiYRfiA 1275 (1567)
T KOG1015|consen 1260 YRFGQT-KPVYIYRFIA 1275 (1567)
T ss_pred HhhcCc-Cceeehhhhh
Confidence 999973 2456666663
No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=92.47 E-value=0.32 Score=51.06 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=20.0
Q ss_pred CeEEEEcCCCChHHHH--HH-HHH-HcCCcEEEEc
Q 003587 295 KIIYHCGPTNSGKTYN--AL-QRF-MEAKKGIYCS 325 (809)
Q Consensus 295 rdviv~apTGSGKTl~--~L-~~L-~~~~~~Lvls 325 (809)
..+++.||+|+|||+- ++ ..+ ..+..++|+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 3578999999999976 22 222 2344555554
No 223
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.39 E-value=1.8 Score=47.00 Aligned_cols=48 Identities=33% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCCChHHHHH--HH-HHH-c-C-CcEEEEc--ccHhHHHHHHHHHHh
Q 003587 293 KRKIIYHCGPTNSGKTYNA--LQ-RFM-E-A-KKGIYCS--PLRLLAMEVFDKVNA 340 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~--L~-~L~-~-~-~~~Lvls--PtR~La~Q~~~~l~~ 340 (809)
.++.++++||||+|||+.+ |. .+. . + .++.++. |.|.-+.++...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~ 248 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAK 248 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHH
Confidence 5779999999999999882 22 222 3 3 3454444 667666555554443
No 224
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.071 Score=59.71 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=23.5
Q ss_pred hCCCeEEEEcCCCChHHHH--HHHHHHcCCcEE
Q 003587 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEAKKGI 322 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~L~~L~~~~~~L 322 (809)
|..-++|+.||||||||+. -|..++.-|-+|
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaI 256 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAI 256 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCCeEE
Confidence 5667899999999999987 466666555444
No 225
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.29 E-value=0.13 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.5
Q ss_pred eEEEEcCCCChHHHH--HHHHHH
Q 003587 296 IIYHCGPTNSGKTYN--ALQRFM 316 (809)
Q Consensus 296 dviv~apTGSGKTl~--~L~~L~ 316 (809)
.|+++||+|+|||.. ++..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999987 444444
No 226
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=92.28 E-value=0.44 Score=58.23 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=43.9
Q ss_pred hHHhhCCCe-EEEEcCCCChHHHH--H-HHHHH-cCCcEEEEcccHhHHHHHHHHHHhcCCce
Q 003587 288 FARVMKRKI-IYHCGPTNSGKTYN--A-LQRFM-EAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (809)
Q Consensus 288 ~~~~l~grd-viv~apTGSGKTl~--~-L~~L~-~~~~~LvlsPtR~La~Q~~~~l~~~g~~~ 345 (809)
+..+|.-+| .++.|-+|+|||+. . +..|. .++++|..+=|-..+..+.-+|+.+++..
T Consensus 678 ~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~ 740 (1100)
T KOG1805|consen 678 LLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYI 740 (1100)
T ss_pred HHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcce
Confidence 334565555 67889999999987 2 33333 56778888899999999999999987764
No 227
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.15 E-value=0.25 Score=52.04 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.|..+++.||+|+|||+.+++.+. .+.+++|++ +-+-..|+.+++..+|.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 478899999999999998655443 455788887 566777888888877654
No 228
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=91.84 E-value=0.21 Score=61.87 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=34.0
Q ss_pred EEEEcCCCChHHHHHH-HHHH---cCCcEEEEcccHhHHHHHHHHH----HhcCCceeeeec
Q 003587 297 IYHCGPTNSGKTYNAL-QRFM---EAKKGIYCSPLRLLAMEVFDKV----NALGVYCSLLTG 350 (809)
Q Consensus 297 viv~apTGSGKTl~~L-~~L~---~~~~~LvlsPtR~La~Q~~~~l----~~~g~~~~l~~g 350 (809)
-|+-+.||=|||+++. +..+ .+..+-||+..--||.-=++.+ .-+|..++++..
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~ 246 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDK 246 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCC
Confidence 3678999999999943 3222 4555556666666665433333 345888877654
No 229
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.81 E-value=0.15 Score=59.18 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=42.3
Q ss_pred CeEEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHhcCCceeeee
Q 003587 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (809)
Q Consensus 295 rdviv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~ 349 (809)
..++++||||||||.. +++.|+. .+.+||.-|--+|+......+++.|..+-++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 3699999999999988 4555554 34556666999999999988888877665543
No 230
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.70 E-value=0.15 Score=56.80 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=28.3
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHH-cCCcEEEEcccHhHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSPLRLLA 331 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~-~~~~~LvlsPtR~La 331 (809)
+..+++++++||||||||+. +|.... ...+.+.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 56889999999999999987 333222 334555555666663
No 231
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=91.58 E-value=0.37 Score=60.56 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=51.4
Q ss_pred chhHHhhCCC-eEEEEcCCCChHHHH--HHHHH-H-cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCc
Q 003587 286 FPFARVMKRK-IIYHCGPTNSGKTYN--ALQRF-M-EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN 360 (809)
Q Consensus 286 ~p~~~~l~gr-dviv~apTGSGKTl~--~L~~L-~-~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~ 360 (809)
.++..++.++ .+++.|+.|+|||+. ++..+ . .+..++.++||--.|..+.+. .|+....+..-.......
T Consensus 353 ~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~---tGi~a~TI~sll~~~~~~-- 427 (988)
T PRK13889 353 DALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGG---SGIASRTIASLEHGWGQG-- 427 (988)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhc---cCcchhhHHHHHhhhccc--
Confidence 3454566644 578999999999987 22222 2 355788889998877665431 233322111110000000
Q ss_pred ceeeeeeecccCCcccEEEEecccccccc
Q 003587 361 HIACTVEMVSTDEMYDVAVIDEIQMMSDA 389 (809)
Q Consensus 361 ~i~~tie~lt~~rlv~~vVIDEAH~i~d~ 389 (809)
.. .+. ..++||||||-|+...
T Consensus 428 -----~~--~l~-~~~vlIVDEASMv~~~ 448 (988)
T PRK13889 428 -----RD--LLT-SRDVLVIDEAGMVGTR 448 (988)
T ss_pred -----cc--ccc-cCcEEEEECcccCCHH
Confidence 00 011 1589999999999753
No 232
>PRK05642 DNA replication initiation factor; Validated
Probab=91.50 E-value=0.46 Score=50.05 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=22.1
Q ss_pred CeEEEEcCCCChHHHH--HH-HHHH-cCCcEEEEcccHhHH
Q 003587 295 KIIYHCGPTNSGKTYN--AL-QRFM-EAKKGIYCSPLRLLA 331 (809)
Q Consensus 295 rdviv~apTGSGKTl~--~L-~~L~-~~~~~LvlsPtR~La 331 (809)
..++++||+|+|||+- ++ ..+. .+.+++|+. ...+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHH
Confidence 4678999999999976 22 1222 344555544 44444
No 233
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.42 E-value=0.87 Score=44.23 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhcCCCC---eEEEEeccc--cccccccc---ccEEEEcCCCCCCCC----------------------Cc
Q 003587 494 ETRRQQANLFNDQDNE---FDVLVASDA--VGMGLNLN---IRRVVFYSLSKYNGD----------------------KI 543 (809)
Q Consensus 494 ~~R~~~~~~F~~~~g~---~~ILVATda--l~~GIDip---V~~VI~~d~~K~dg~----------------------~~ 543 (809)
.+...+++.|+. .. -.||+|+.- +..|||+| .+.||..+++-.+.. -.
T Consensus 31 ~~~~~~l~~f~~--~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~ 108 (142)
T smart00491 31 GETEELLEKYSA--ACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVY 108 (142)
T ss_pred chHHHHHHHHHH--hcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 344678889983 22 258888876 99999995 799999997642111 01
Q ss_pred ccCCHhHHHHHHcccCCCCCCCCceEEEEEe
Q 003587 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (809)
Q Consensus 544 ~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~~~ 574 (809)
.|.-.-...|-+||+=|.... .|.++.+-
T Consensus 109 ~~~a~~~~~Qa~GR~iR~~~D--~g~i~l~D 137 (142)
T smart00491 109 LFDAMRALAQAIGRAIRHKND--YGVVVLLD 137 (142)
T ss_pred HHHHHHHHHHHhCccccCccc--eEEEEEEe
Confidence 233455678999999998763 67666553
No 234
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=91.37 E-value=0.17 Score=54.65 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=18.5
Q ss_pred ccEEEEecccccccccchhHHHHHHhh
Q 003587 375 YDVAVIDEIQMMSDACRGYAWTRALLG 401 (809)
Q Consensus 375 v~~vVIDEAH~i~d~~~g~~~~~ill~ 401 (809)
+.++|+||||.|...-|. ++++.+..
T Consensus 130 fKiiIlDEcdsmtsdaq~-aLrr~mE~ 155 (346)
T KOG0989|consen 130 FKIIILDECDSMTSDAQA-ALRRTMED 155 (346)
T ss_pred ceEEEEechhhhhHHHHH-HHHHHHhc
Confidence 799999999999864333 34555544
No 235
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.32 E-value=0.62 Score=59.09 Aligned_cols=83 Identities=18% Similarity=0.119 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCCChHHHH--HHHH-HH-cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeee
Q 003587 293 KRKIIYHCGPTNSGKTYN--ALQR-FM-EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEM 368 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~--~L~~-L~-~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~ 368 (809)
.++.++++|+-|+|||+. ++.. +. .+..++.++||---|..+.+. .|+.+..+.+-........
T Consensus 396 ~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~---~Gi~a~TIas~ll~~~~~~--------- 463 (1102)
T PRK13826 396 PARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKE---AGIQSRTLSSWELRWNQGR--------- 463 (1102)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHh---hCCCeeeHHHHHhhhccCc---------
Confidence 467899999999999998 3322 22 355778888998777666443 2554433222111100000
Q ss_pred cccCCcccEEEEeccccccc
Q 003587 369 VSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 369 lt~~rlv~~vVIDEAH~i~d 388 (809)
.+...-++||||||-|+..
T Consensus 464 -~~l~~~~vlVIDEAsMv~~ 482 (1102)
T PRK13826 464 -DQLDNKTVFVLDEAGMVAS 482 (1102)
T ss_pred -cCCCCCcEEEEECcccCCH
Confidence 0111147999999999974
No 236
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.26 E-value=0.14 Score=57.91 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=40.3
Q ss_pred EEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHhcCCceeeee
Q 003587 297 IYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (809)
Q Consensus 297 viv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~ 349 (809)
++++||||||||.+ +++.++. .+.+||+-|--++........+..|..+-++.
T Consensus 2 ~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 2 VLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred eeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 68999999999988 4455554 45667777999999888887777777665544
No 237
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.26 E-value=1.2 Score=54.78 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=76.8
Q ss_pred HHHHHhcCCCCEEEEec-hhHHHHHHHHHHHhcC-------CeEEEEeCCCCHHHHHHHHHHhhc--CCCCeEEEEec--
Q 003587 449 LGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHTN-------HHCCVIYGALPPETRRQQANLFND--QDNEFDVLVAS-- 516 (809)
Q Consensus 449 l~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g-------~~v~~lhg~l~~~~R~~~~~~F~~--~~g~~~ILVAT-- 516 (809)
+..+....+|.++|||+ -...+.++..+.+. + .+...+=+ -...++..+++.|+. ..++-.||+|+
T Consensus 514 i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~-~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~g 591 (705)
T TIGR00604 514 LVEFSKIIPDGIVVFFPSYSYLENIVSTWKEM-GILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAG 591 (705)
T ss_pred HHHHhhcCCCcEEEEccCHHHHHHHHHHHHhc-CHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecC
Confidence 33444556788899885 45556666655431 1 11222212 222577889999963 12455699999
Q ss_pred cccccccccc---ccEEEEcCCCCCCCC------------------C----cccCCHhHHHHHHcccCCCCCCCCceEEE
Q 003587 517 DAVGMGLNLN---IRRVVFYSLSKYNGD------------------K----IIPVPGSQVKQIAGRAGRRGSIYPDGLTT 571 (809)
Q Consensus 517 dal~~GIDip---V~~VI~~d~~K~dg~------------------~----~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i 571 (809)
..+..|||++ .+.||..++|-.+.. . +...-+-...|-+||+=|...+ .|.++
T Consensus 592 Gk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D--~G~ii 669 (705)
T TIGR00604 592 GKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD--YGSIV 669 (705)
T ss_pred CcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc--eEEEE
Confidence 8999999994 899999998642111 0 0111224557999999998763 68777
Q ss_pred EEe
Q 003587 572 TLN 574 (809)
Q Consensus 572 ~~~ 574 (809)
++-
T Consensus 670 llD 672 (705)
T TIGR00604 670 LLD 672 (705)
T ss_pred EEe
Confidence 664
No 238
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.22 E-value=0.3 Score=49.27 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=28.4
Q ss_pred hCCCeEEEEcCCCChHHHHH---HHHHHcCCcEEEEcccHhHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNA---LQRFMEAKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~---L~~L~~~~~~LvlsPtR~La~Q~~ 335 (809)
-+++++++.||||+|||+.+ ...+...+..++..+..+|+..+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 45789999999999999872 334455555555566667776654
No 239
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.19 E-value=0.44 Score=49.63 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.5
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.++.++++||+|+|||..
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356799999999999976
No 240
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=91.16 E-value=0.55 Score=51.45 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH-cCCcEEEEccc
Q 003587 296 IIYHCGPTNSGKTYNALQRFM-EAKKGIYCSPL 327 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~~L~-~~~~~LvlsPt 327 (809)
-+++.||+|+|||..+-.... .+...+++.|.
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 455589999999987322111 13344555554
No 241
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=91.04 E-value=1.8 Score=54.04 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=66.3
Q ss_pred CCeEEEEcCCCChHHHHH---HHHHH--cC--CcEEEEcccHhHHHHHHHHHHhcCCceee--eecccccc--------c
Q 003587 294 RKIIYHCGPTNSGKTYNA---LQRFM--EA--KKGIYCSPLRLLAMEVFDKVNALGVYCSL--LTGQEKKL--------V 356 (809)
Q Consensus 294 grdviv~apTGSGKTl~~---L~~L~--~~--~~~LvlsPtR~La~Q~~~~l~~~g~~~~l--~~g~~~~~--------~ 356 (809)
+-+-|+.-.-|-|||.+. |..|. ++ |--|||+||-.+. .+.-+|++++-...+ +.|..... .
T Consensus 634 nlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL-nWEMElKRwcPglKILTYyGs~kErkeKRqgW~k 712 (1958)
T KOG0391|consen 634 NLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKRWCPGLKILTYYGSHKERKEKRQGWAK 712 (1958)
T ss_pred cccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhhhCCcceEeeecCCHHHHHHHhhcccC
Confidence 335677788999999883 22222 22 3458999997654 455667776443333 33432211 1
Q ss_pred ccCcceeeee-eeccc------CCcccEEEEecccccccccchhHHHHHHhhccc-ccccccCCch
Q 003587 357 PFSNHIACTV-EMVST------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPS 414 (809)
Q Consensus 357 ~~~~~i~~ti-e~lt~------~rlv~~vVIDEAH~i~d~~~g~~~~~ill~l~~-~~i~l~~s~~ 414 (809)
+..-|+.+|- ..+.. .+.+.++||||||.+-. |...-..+++.+.. .++.|+++|-
T Consensus 713 PnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn--fksqrWQAllnfnsqrRLLLtgTPL 776 (1958)
T KOG0391|consen 713 PNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN--FKSQRWQALLNFNSQRRLLLTGTPL 776 (1958)
T ss_pred CCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc--hhHHHHHHHhccchhheeeecCCch
Confidence 2233444331 11111 12289999999999986 44444455555554 3455566663
No 242
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.88 E-value=0.55 Score=50.28 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=36.6
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEc---ccHhHHHHHHHHHHhcCCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCS---PLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~Lvls---PtR~La~Q~~~~l~~~g~~ 344 (809)
..|..+++.||+|+|||..+++.+. .+.+++|++ |...+..++..+...+|..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 3578999999999999998655443 456888887 4555555555555555443
No 243
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.87 E-value=0.6 Score=54.04 Aligned_cols=88 Identities=25% Similarity=0.239 Sum_probs=51.6
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCcee-eeecccccccccCcceeeee
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVYCS-LLTGQEKKLVPFSNHIACTV 366 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~-l~~g~~~~~~~~~~~i~~ti 366 (809)
..|..+++.|++|+|||+..++.+. .+.+++|++ +.+-..|+..+...+|.... +....+. . ...+ .
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~Ees~~qi~~ra~rlg~~~~~l~~~~e~---~-l~~i---~ 149 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GEESASQIKLRAERLGLPSDNLYLLAET---N-LEAI---L 149 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-ccccHHHHHHHHHHcCCChhcEEEeCCC---C-HHHH---H
Confidence 3477899999999999998554432 356788887 34556678777777765321 1000000 0 0000 0
Q ss_pred eecccCCcccEEEEeccccccc
Q 003587 367 EMVSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 367 e~lt~~rlv~~vVIDEAH~i~d 388 (809)
..+.. ...++||||+++.+..
T Consensus 150 ~~i~~-~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 150 ATIEE-EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHh-hCCCEEEEechhhhcc
Confidence 11111 1268999999998753
No 244
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.53 E-value=0.33 Score=40.20 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCChHHHH--HHHHHHcC
Q 003587 293 KRKIIYHCGPTNSGKTYN--ALQRFMEA 318 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~--~L~~L~~~ 318 (809)
.|..+++.||+|||||.. +++.++-+
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356899999999999998 67666544
No 245
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.45 E-value=0.37 Score=50.21 Aligned_cols=53 Identities=28% Similarity=0.384 Sum_probs=37.0
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHH----Hc-CCcEEEEcccHhHHHHHHHHHHhcCCce
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRF----ME-AKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L----~~-~~~~LvlsPtR~La~Q~~~~l~~~g~~~ 345 (809)
-.|..+++.||+|+|||.-+++.+ .. +.+++|++ +-+-..++.+.++.+|.+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d~ 74 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWDL 74 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-H
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCcH
Confidence 357899999999999999865544 34 66777776 4455578888888877653
No 246
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.45 E-value=0.54 Score=52.05 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.4
Q ss_pred CeEEEEcCCCChHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNAL 312 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L 312 (809)
..+++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 468999999999998843
No 247
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.41 E-value=5.1 Score=39.76 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.2
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+++.|+.|+|||+..
T Consensus 7 ki~ITG~PGvGKtTl~ 22 (179)
T COG1618 7 KIFITGRPGVGKTTLV 22 (179)
T ss_pred EEEEeCCCCccHHHHH
Confidence 6889999999999873
No 248
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.26 E-value=0.49 Score=51.81 Aligned_cols=41 Identities=34% Similarity=0.327 Sum_probs=28.9
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHH-c---CCcEEEEcccHhHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFM-E---AKKGIYCSPLRLLA 331 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~-~---~~~~LvlsPtR~La 331 (809)
+..+++++++||||||||+. +|.... . ..+++++--+.||.
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 45678999999999999988 443333 2 34566666777763
No 249
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=0.42 Score=53.85 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=14.5
Q ss_pred CeEEEEcCCCChHHHH
Q 003587 295 KIIYHCGPTNSGKTYN 310 (809)
Q Consensus 295 rdviv~apTGSGKTl~ 310 (809)
.++++.||||+|||.+
T Consensus 43 ~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 43 SNIIIYGPTGTGKTAT 58 (366)
T ss_pred ccEEEECCCCCCHhHH
Confidence 4699999999999998
No 250
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.15 E-value=0.23 Score=61.43 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.2
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||+++
T Consensus 39 a~Lf~Gp~G~GKTt~A 54 (824)
T PRK07764 39 AYLFSGPRGCGKTSSA 54 (824)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999984
No 251
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=90.13 E-value=0.37 Score=59.71 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=50.7
Q ss_pred EEEcCCCChHHHHHH-HHHH---cCCcEEEEcccHhHHHHHHHHHH----hcCCceeeeeccccccc---c-cCcceeee
Q 003587 298 YHCGPTNSGKTYNAL-QRFM---EAKKGIYCSPLRLLAMEVFDKVN----ALGVYCSLLTGQEKKLV---P-FSNHIACT 365 (809)
Q Consensus 298 iv~apTGSGKTl~~L-~~L~---~~~~~LvlsPtR~La~Q~~~~l~----~~g~~~~l~~g~~~~~~---~-~~~~i~~t 365 (809)
|.-+.||=|||+++. +..+ .+..+-||+..--||.-=.+.+. -+|..++++........ . ....+++|
T Consensus 155 IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~~DItYgT 234 (1025)
T PRK12900 155 ISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYGT 234 (1025)
T ss_pred ccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhCCCcceecC
Confidence 578999999999943 3222 44555566666667654444443 34888777644322111 1 12233333
Q ss_pred e----------eecc-cC----CcccEEEEecccccc
Q 003587 366 V----------EMVS-TD----EMYDVAVIDEIQMMS 387 (809)
Q Consensus 366 i----------e~lt-~~----rlv~~vVIDEAH~i~ 387 (809)
- .|+. +. +.+.++||||+|.++
T Consensus 235 n~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 235 NNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 1 1211 11 227899999999874
No 252
>PF13871 Helicase_C_4: Helicase_C-like
Probab=90.01 E-value=0.78 Score=49.47 Aligned_cols=67 Identities=27% Similarity=0.342 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCCeEEEEeccccccccccc-c--------cEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCce
Q 003587 498 QQANLFNDQDNEFDVLVASDAVGMGLNLN-I--------RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG 568 (809)
Q Consensus 498 ~~~~~F~~~~g~~~ILVATdal~~GIDip-V--------~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G 568 (809)
...+.|. +|+.+|+|.|++.+.||.+- - +.-|...+ |.|....+|..||+-|.|.. .+
T Consensus 52 ~e~~~F~--~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~---------pwsad~aiQ~~GR~hRsnQ~--~~ 118 (278)
T PF13871_consen 52 AEKQAFM--DGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLEL---------PWSADKAIQQFGRTHRSNQV--SA 118 (278)
T ss_pred HHHHHHh--CCCceEEEEecccccccchhccccCCCCCceEEEEeeC---------CCCHHHHHHHhccccccccc--cC
Confidence 4567898 89999999999999999873 1 12244555 89999999999999999984 33
Q ss_pred EEEEEeccc
Q 003587 569 LTTTLNLDD 577 (809)
Q Consensus 569 ~~i~~~~~d 577 (809)
-.|.++..+
T Consensus 119 P~y~~l~t~ 127 (278)
T PF13871_consen 119 PEYRFLVTD 127 (278)
T ss_pred CEEEEeecC
Confidence 344444433
No 253
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.98 E-value=0.83 Score=55.40 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=38.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHc-CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 296 IIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
..++.|-||||||+.+...+.. +..+|||+|...+|.|++..|+.+
T Consensus 31 ~~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred cEEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 5568999999999985544443 457899999999999999999887
No 254
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=89.97 E-value=0.47 Score=49.39 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.6
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
++++.||+|.|||+++
T Consensus 50 ~liisGpPG~GKTTsi 65 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSI 65 (333)
T ss_pred ceEeeCCCCCchhhHH
Confidence 7899999999999983
No 255
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=89.96 E-value=0.33 Score=53.65 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=24.7
Q ss_pred cEEEEecccccccccchhHHHHHHhhcc-cccccccCCchH
Q 003587 376 DVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIHLCGDPSV 415 (809)
Q Consensus 376 ~~vVIDEAH~i~d~~~g~~~~~ill~l~-~~~i~l~~s~~~ 415 (809)
.++||||||.+. -+.+..++.... ..++.++++|+-
T Consensus 353 ~FiIIDEaQNLT----pheikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLT----PHELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccC----HHHHHHHHHhccCCCEEEEcCCHHH
Confidence 789999999997 345555555543 346677777654
No 256
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.86 E-value=0.57 Score=47.43 Aligned_cols=20 Identities=50% Similarity=0.426 Sum_probs=18.1
Q ss_pred hhCCCeEEEEcCCCChHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~ 310 (809)
+-.|..++++||||||||+.
T Consensus 22 v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 22 VEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HhCCCEEEEECCCCCCHHHH
Confidence 46789999999999999987
No 257
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.81 E-value=0.38 Score=55.77 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=40.8
Q ss_pred CeEEEEcCCCChHHHH--HH-HHHHcC--CcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeec
Q 003587 295 KIIYHCGPTNSGKTYN--AL-QRFMEA--KKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (809)
Q Consensus 295 rdviv~apTGSGKTl~--~L-~~L~~~--~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~l 369 (809)
..+++.||+|+|||+. ++ ..+... +..++.++...+..+....+.... .. ++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~----------~~------------~~~ 206 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNT----------ME------------EFK 206 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCc----------HH------------HHH
Confidence 4589999999999987 22 233332 233333455666666655553210 00 000
Q ss_pred ccCCcccEEEEeccccccc
Q 003587 370 STDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 370 t~~rlv~~vVIDEAH~i~d 388 (809)
..-+.++++||||+|.+..
T Consensus 207 ~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 207 EKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHhcCCEEEEehhhhhcC
Confidence 0001268999999999853
No 258
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.75 E-value=0.6 Score=50.87 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.7
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
..+++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999874
No 259
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=89.75 E-value=0.51 Score=52.18 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=26.8
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHH----cCCcEEEEcccHhH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFM----EAKKGIYCSPLRLL 330 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~----~~~~~LvlsPtR~L 330 (809)
+..+++++++|+||||||+. +|.... ...+.+++-.+.||
T Consensus 141 v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 141 IDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 46788999999999999987 343322 22344555456665
No 260
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=89.63 E-value=0.52 Score=43.84 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=13.3
Q ss_pred EEEEcCCCChHHHHH
Q 003587 297 IYHCGPTNSGKTYNA 311 (809)
Q Consensus 297 viv~apTGSGKTl~~ 311 (809)
+++.||.|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999883
No 261
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.41 E-value=0.33 Score=53.90 Aligned_cols=41 Identities=29% Similarity=0.280 Sum_probs=27.5
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHH-cCCcEEEEcccHhHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSPLRLLA 331 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~-~~~~~LvlsPtR~La 331 (809)
+..+++++++|+||||||+. +|.... ...+++++--+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccc
Confidence 46789999999999999987 333333 334545544555553
No 262
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.40 E-value=0.36 Score=57.71 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=43.6
Q ss_pred CeEEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHhcCCceeeee
Q 003587 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (809)
Q Consensus 295 rdviv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~ 349 (809)
+.++++||||||||.. .++.|+. ++.+||+=|--|+........++.|..+-++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999998 4555554 45666667999999999998888887776554
No 263
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.29 E-value=0.64 Score=53.61 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCChHHHH---HHHHHHcC
Q 003587 294 RKIIYHCGPTNSGKTYN---ALQRFMEA 318 (809)
Q Consensus 294 grdviv~apTGSGKTl~---~L~~L~~~ 318 (809)
.--+++.||||||||+. +|..+...
T Consensus 258 ~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 258 QGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 34689999999999988 34444433
No 264
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.24 E-value=0.32 Score=52.18 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=26.5
Q ss_pred hCCCeEEEEcCCCChHHHH--HH-HHHHcC-CcEEEEcccHhHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN--AL-QRFMEA-KKGIYCSPLRLLA 331 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~L-~~L~~~-~~~LvlsPtR~La 331 (809)
..+..++++||||||||+. ++ ..+-.. .+++++-...|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 4588999999999999998 33 223334 4566666665553
No 265
>PRK11054 helD DNA helicase IV; Provisional
Probab=89.23 E-value=1 Score=54.85 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=40.0
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHH---H-----cCCcEEEEcccHhHHHHHHHHHHhc
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRF---M-----EAKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L---~-----~~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
......++|.|..|||||.+.+..+ + .+..+++++.++..|..+.+++...
T Consensus 206 ~~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 206 VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred hCCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 4455678999999999999854332 2 2237899999999999999999764
No 266
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=89.13 E-value=1.5 Score=49.41 Aligned_cols=56 Identities=29% Similarity=0.399 Sum_probs=35.9
Q ss_pred hCCCeEEEEcCCCChHHHH----HHHHH--HcCCc-EEEEc-ccHhHHHHHHHHHHh-cCCceee
Q 003587 292 MKRKIIYHCGPTNSGKTYN----ALQRF--MEAKK-GIYCS-PLRLLAMEVFDKVNA-LGVYCSL 347 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~----~L~~L--~~~~~-~Lvls-PtR~La~Q~~~~l~~-~g~~~~l 347 (809)
.+++.+.++||||.|||+. +.... ....+ +||-. -.|.=|.+|.+...+ +|+++.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v 265 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV 265 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE
Confidence 4589999999999999987 22222 22333 45544 667777666665544 4666554
No 267
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.05 E-value=0.39 Score=53.70 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.8
Q ss_pred CeEEEEcCCCChHHHH
Q 003587 295 KIIYHCGPTNSGKTYN 310 (809)
Q Consensus 295 rdviv~apTGSGKTl~ 310 (809)
..+++.||+|+|||..
T Consensus 41 ~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV 56 (365)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999988
No 268
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.02 E-value=0.28 Score=52.26 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCeEEEEcCCCChHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 294 grdviv~apTGSGKTl~~ 311 (809)
...++++||+|+|||+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 346889999999999984
No 269
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=88.93 E-value=0.97 Score=54.22 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=37.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHhHHHHHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~~~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
..+++.|--|+|||++ ++.+.+.-.++|.+||+..|+.+...|+
T Consensus 72 s~~~itG~AGsGKst~-i~~l~~~l~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTS-IQTLNENLDCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHH-HHHHHHhcCEEEEcchHHHHHhhhcccc
Confidence 4789999999999998 5555556689999999999999988776
No 270
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=88.83 E-value=0.51 Score=51.85 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=38.7
Q ss_pred CCCCCccchhHHhhCCCeEEEEcCCCChHHHHH----HHHHHcCC-cEEEEc-ccHhHHHHHHHHHHhcCCceeeeeccc
Q 003587 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA----LQRFMEAK-KGIYCS-PLRLLAMEVFDKVNALGVYCSLLTGQE 352 (809)
Q Consensus 279 ~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~~----L~~L~~~~-~~Lvls-PtR~La~Q~~~~l~~~g~~~~l~~g~~ 352 (809)
...|.|...+..+.+...++++||-|+|||+-+ ..++..+. +-|+++ |-. +.|.+.+++-|+.
T Consensus 128 ~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPaV-----------EAGEklGfLPGdl 196 (348)
T COG1702 128 PKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPAV-----------EAGEKLGFLPGDL 196 (348)
T ss_pred ecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcch-----------hcCcccCcCCCch
Confidence 344455333334677788999999999999873 33443322 336666 722 2366666666654
Q ss_pred c
Q 003587 353 K 353 (809)
Q Consensus 353 ~ 353 (809)
.
T Consensus 197 ~ 197 (348)
T COG1702 197 R 197 (348)
T ss_pred h
Confidence 4
No 271
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.78 E-value=0.47 Score=53.37 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=14.0
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+++.||.|+|||..+
T Consensus 40 ~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 40 AWLLSGTRGVGKTTIA 55 (363)
T ss_pred EEEEecCCCCCHHHHH
Confidence 4689999999999984
No 272
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=88.77 E-value=0.58 Score=51.73 Aligned_cols=20 Identities=40% Similarity=0.338 Sum_probs=17.9
Q ss_pred hhCCCeEEEEcCCCChHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~ 310 (809)
+..+++++++|+||||||+.
T Consensus 145 v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred HHcCCeEEEECCCCCCHHHH
Confidence 46788999999999999976
No 273
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.75 E-value=0.36 Score=48.39 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.6
Q ss_pred eEEEEcCCCChHHHH
Q 003587 296 IIYHCGPTNSGKTYN 310 (809)
Q Consensus 296 dviv~apTGSGKTl~ 310 (809)
+++.+||||+|||..
T Consensus 5 ~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 688999999999976
No 274
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=88.68 E-value=2 Score=51.61 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=38.8
Q ss_pred HhhCCCeEEEEcCCCChHHHH---HHHHHH--cCCcEEEEcccHhHHHHHHHHHHhc
Q 003587 290 RVMKRKIIYHCGPTNSGKTYN---ALQRFM--EAKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 290 ~~l~grdviv~apTGSGKTl~---~L~~L~--~~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
.....+-.++.+|=|-|||.+ ++.++. .+..++|.+|...-+.++.+++...
T Consensus 183 ~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 183 DEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred HHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHH
Confidence 346778888999999999988 222222 4567888899988888888776553
No 275
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.67 E-value=0.5 Score=51.05 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=15.7
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
..+--|+|.||||||||+.
T Consensus 123 ~~~GLILVTGpTGSGKSTT 141 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTT 141 (353)
T ss_pred CCCceEEEeCCCCCcHHHH
Confidence 3445689999999999987
No 276
>PRK04328 hypothetical protein; Provisional
Probab=88.57 E-value=0.84 Score=48.55 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.|..+++.||+|+|||.-+++.+ ..+..++|++ +-+-..++.+.+..+|..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 47889999999999998755443 3455777776 555566777777777654
No 277
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.54 E-value=0.98 Score=50.66 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHH-HHHHHcCCcEEEEcccHhHHHHHHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA-LQRFMEAKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 296 dviv~apTGSGKTl~~-L~~L~~~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
.+|..||.|+|||..+ +.+-..+....-++.+..=..++.+.+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e 94 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIE 94 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHH
Confidence 6899999999999873 3333333344555555555555544443
No 278
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.40 E-value=1.1 Score=46.81 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=41.0
Q ss_pred eEEEEcCCCChHHHH--HH-HHHH---cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeec
Q 003587 296 IIYHCGPTNSGKTYN--AL-QRFM---EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (809)
Q Consensus 296 dviv~apTGSGKTl~--~L-~~L~---~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~l 369 (809)
-+++.||+|+|||.- ++ ..+. .+.+++| .+..+.+......+... ....+ .
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y-~~~~~f~~~~~~~~~~~-~~~~~---------------------~ 92 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVY-LSAEEFIREFADALRDG-EIEEF---------------------K 92 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEE-EEHHHHHHHHHHHHHTT-SHHHH---------------------H
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcccccccee-ecHHHHHHHHHHHHHcc-cchhh---------------------h
Confidence 578999999999985 22 2222 2334444 45556666666666541 10000 0
Q ss_pred ccCCcccEEEEeccccccc
Q 003587 370 STDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 370 t~~rlv~~vVIDEAH~i~d 388 (809)
..-+.+++++||.+|.+..
T Consensus 93 ~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 93 DRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HHHCTSSEEEEETGGGGTT
T ss_pred hhhhcCCEEEEecchhhcC
Confidence 0001279999999999975
No 279
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.39 E-value=0.39 Score=56.49 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=14.0
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|..||.|+|||..+
T Consensus 40 a~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 40 AYLFTGTRGVGKTTIS 55 (509)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999883
No 280
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.31 E-value=0.52 Score=53.82 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=26.6
Q ss_pred CeEEEEcCCCChHHHHH--H-HHHHc---CCcEEEEcccHhHHHHHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA--L-QRFME---AKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 295 rdviv~apTGSGKTl~~--L-~~L~~---~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
..+++.||+|+|||..+ + ..+.+ +..++|+ +...+..++...+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~~~~~~~~~~~ 186 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEKFTNDFVNALR 186 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHHHHHHHHHHHH
Confidence 35789999999999872 2 22332 2345555 44455555554443
No 281
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.28 E-value=0.55 Score=54.74 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.7
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
+-+|.+||.|+|||.++
T Consensus 36 ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 36 QSILLVGASGVGKTTCA 52 (491)
T ss_pred ceEEEECCCCccHHHHH
Confidence 36899999999999973
No 282
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=88.21 E-value=0.4 Score=58.15 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|++||.|+|||+.+
T Consensus 40 AyLFtGPpGvGKTTlA 55 (830)
T PRK07003 40 AYLFTGTRGVGKTTLS 55 (830)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999883
No 283
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.15 E-value=0.47 Score=53.69 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
...+++.||+|+|||..
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999998
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=87.92 E-value=0.98 Score=47.47 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=35.7
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
..|..+++.||+|+|||+.+++.+. .+.+++|++ +-+-..+..+.+.++|..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~-~e~~~~~~~~~~~~~g~~ 77 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS-TQLTTTEFIKQMMSLGYD 77 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-CCCCHHHHHHHHHHhCCc
Confidence 4578999999999999998544332 455778887 444445666666666553
No 285
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.62 E-value=1.5 Score=54.11 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=46.8
Q ss_pred HhcCCCCEEEEe-chhHHHHHHHHHHH----hcCCeEEE-EeCCCCHHHHHHHHHHhhcCCCCeEEEEecccc
Q 003587 453 RNVRSGDCVVAF-SRREIFEVKMAIEK----HTNHHCCV-IYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519 (809)
Q Consensus 453 ~~~~~g~~II~f-srk~~~~l~~~L~~----~~g~~v~~-lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal 519 (809)
......++.|+| |+.-+.+.+..|.+ ..+..+.+ |||.|+..+++..+++|. +|..+|||+|+.+
T Consensus 121 ~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~--~gdfdIlitTs~F 191 (1187)
T COG1110 121 LAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIE--SGDFDILITTSQF 191 (1187)
T ss_pred HHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHh--cCCccEEEEeHHH
Confidence 334445666666 66555666666554 21244433 999999999999999999 8999999999754
No 286
>PRK04195 replication factor C large subunit; Provisional
Probab=87.59 E-value=1.2 Score=52.08 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.7
Q ss_pred CCeEEEEcCCCChHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 294 grdviv~apTGSGKTl~~ 311 (809)
.+.+++.||+|+|||+.+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999874
No 287
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.52 E-value=1.5 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=18.4
Q ss_pred hhCCCeEEEEcCCCChHHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~ 311 (809)
+-.+.+++..||+|+|||+.+
T Consensus 206 ve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHH
Confidence 568889999999999999763
No 288
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.31 E-value=0.51 Score=56.54 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=14.2
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|++||.|+|||..+
T Consensus 39 AyLF~GPpGvGKTTlA 54 (702)
T PRK14960 39 AYLFTGTRGVGKTTIA 54 (702)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5699999999999884
No 289
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.23 E-value=0.95 Score=52.39 Aligned_cols=71 Identities=25% Similarity=0.400 Sum_probs=41.2
Q ss_pred CeEEEEcCCCChHHHH---HHHHHH-cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeecc
Q 003587 295 KIIYHCGPTNSGKTYN---ALQRFM-EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370 (809)
Q Consensus 295 rdviv~apTGSGKTl~---~L~~L~-~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~lt 370 (809)
+.+++.||+|+|||.. +...+. .+.+++|+. ...++.+....+.. +... .+. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~~~f~~~~~~~l~~---------~~~~---~f~----------~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-SELFTEHLVSAIRS---------GEMQ---RFR----------Q 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-HHHHHHHHHHHHhc---------chHH---HHH----------H
Confidence 4588999999999986 222333 345666665 34555555544432 1000 000 0
Q ss_pred cCCcccEEEEeccccccc
Q 003587 371 TDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 371 ~~rlv~~vVIDEAH~i~d 388 (809)
.-+.+++++|||+|.+..
T Consensus 199 ~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 199 FYRNVDALFIEDIEVFSG 216 (445)
T ss_pred HcccCCEEEEcchhhhcC
Confidence 011268999999999864
No 290
>PRK05973 replicative DNA helicase; Provisional
Probab=87.08 E-value=0.91 Score=47.98 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=36.8
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
..|.-+++.|++|+|||+-+++.+. .+.+++|++ +-+=..|+.+++..+|..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS-lEes~~~i~~R~~s~g~d 117 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT-LEYTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-EeCCHHHHHHHHHHcCCC
Confidence 4678899999999999998655433 444667775 233357888888877643
No 291
>PLN03025 replication factor C subunit; Provisional
Probab=87.07 E-value=1.3 Score=48.93 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=14.1
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+++.||+|+|||..+
T Consensus 36 ~lll~Gp~G~GKTtla 51 (319)
T PLN03025 36 NLILSGPPGTGKTTSI 51 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5889999999999873
No 292
>PRK10436 hypothetical protein; Provisional
Probab=86.98 E-value=0.61 Score=54.10 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=16.5
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
..+.-++++||||||||+.
T Consensus 216 ~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred hcCCeEEEECCCCCChHHH
Confidence 4566899999999999997
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.83 E-value=1.5 Score=49.45 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=36.0
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
..|..+++.|++|+|||+.+++... .+++++|++-- +-..|+..+...+|..
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~ 135 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGIS 135 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCC
Confidence 3478899999999999998554332 34577888643 3456777777766643
No 294
>PTZ00293 thymidine kinase; Provisional
Probab=86.75 E-value=0.7 Score=47.87 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccH
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLR 328 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR 328 (809)
.|+..++.||-|||||+..|..+. .+.+++++-|..
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 477889999999999987665443 456777777853
No 295
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.71 E-value=4.1 Score=46.01 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=44.9
Q ss_pred hCCCeEEEEcCCCChHHHHH--HH--HHHc-C-CcEEEEc--ccHhHHHHHHHHHHh-cCCceeeee-cccccccccCcc
Q 003587 292 MKRKIIYHCGPTNSGKTYNA--LQ--RFME-A-KKGIYCS--PLRLLAMEVFDKVNA-LGVYCSLLT-GQEKKLVPFSNH 361 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~--L~--~L~~-~-~~~Lvls--PtR~La~Q~~~~l~~-~g~~~~l~~-g~~~~~~~~~~~ 361 (809)
-+|+.++++||||+|||+.+ |. .+.. + .++.+++ +.|.-+.++...+.+ +|+++.... +....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~------- 207 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------- 207 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH-------
Confidence 46889999999999999982 22 1223 3 2333333 445556655555443 354433211 11110
Q ss_pred eeeeeeecccCCcccEEEEecccccc
Q 003587 362 IACTVEMVSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 362 i~~tie~lt~~rlv~~vVIDEAH~i~ 387 (809)
..+..-...++|+||.+-+..
T Consensus 208 -----~~l~~l~~~DlVLIDTaG~~~ 228 (374)
T PRK14722 208 -----LALAELRNKHMVLIDTIGMSQ 228 (374)
T ss_pred -----HHHHHhcCCCEEEEcCCCCCc
Confidence 001111126899999996553
No 296
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.69 E-value=0.6 Score=55.82 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|++||.|.|||..+
T Consensus 40 A~LFtGP~GvGKTTLA 55 (700)
T PRK12323 40 AYLFTGTRGVGKTTLS 55 (700)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999883
No 297
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.67 E-value=1.1 Score=52.57 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=40.1
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
..|..+++.||+|+|||+.+++.+. .+.+++|++ .-|-..|+..++..+|.+
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGID 316 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 3577899999999999998665554 345778877 666678888888888764
No 298
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.64 E-value=0.73 Score=49.54 Aligned_cols=18 Identities=50% Similarity=0.641 Sum_probs=15.7
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.+..++++||||||||+.
T Consensus 79 ~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 79 PHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 455799999999999987
No 299
>PRK09183 transposase/IS protein; Provisional
Probab=86.64 E-value=1.3 Score=47.52 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=27.9
Q ss_pred hhCCCeEEEEcCCCChHHHHH--HH-HHHcCC-cEEEEcccHhHHHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYNA--LQ-RFMEAK-KGIYCSPLRLLAMEVF 335 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~--L~-~L~~~~-~~LvlsPtR~La~Q~~ 335 (809)
+-.|.+++++||+|+|||+.+ +- .+...+ .+++ .+..+|..++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~-~~~~~l~~~l~ 146 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF-TTAADLLLQLS 146 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE-EeHHHHHHHHH
Confidence 356889999999999999872 21 122334 4444 45556665554
No 300
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.54 E-value=0.88 Score=52.75 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=41.9
Q ss_pred CeEEEEcCCCChHHHH--HH-HHHHc---CCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeee
Q 003587 295 KIIYHCGPTNSGKTYN--AL-QRFME---AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEM 368 (809)
Q Consensus 295 rdviv~apTGSGKTl~--~L-~~L~~---~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~ 368 (809)
..+++.|++|+|||+. ++ ..+.. +.+++| .+..++..++...+.... .... +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~y-v~~~~f~~~~~~~l~~~~--------~~~~------------~~ 200 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSY-MSGDEFARKAVDILQKTH--------KEIE------------QF 200 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEE-EEHHHHHHHHHHHHHHhh--------hHHH------------HH
Confidence 3588999999999976 22 22222 234444 455677777777665310 0000 00
Q ss_pred cccCCcccEEEEecccccc
Q 003587 369 VSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 369 lt~~rlv~~vVIDEAH~i~ 387 (809)
...-+.++++||||+|.+.
T Consensus 201 ~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 201 KNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred HHHhccCCEEEEecccccc
Confidence 0001126899999999986
No 301
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=86.51 E-value=0.12 Score=52.16 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=23.2
Q ss_pred EEEcCCCChHHHHHHH---HHHcC--CcEEEEcccHhHHHHHHHHHHh
Q 003587 298 YHCGPTNSGKTYNALQ---RFMEA--KKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 298 iv~apTGSGKTl~~L~---~L~~~--~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
++.|+-|-|||.+.=. .+... ..++|.+|..+-+..+++.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~ 48 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEK 48 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHh
Confidence 4789999999988322 22222 2577888999988888776644
No 302
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=86.50 E-value=0.76 Score=55.46 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHhcCCceeeee
Q 003587 294 RKIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (809)
Q Consensus 294 grdviv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~ 349 (809)
...++++||||||||.. .++.++. ++.+||+=|-.|+........++.|..+-++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfd 281 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLD 281 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999998 5666665 44556666999999888887778777776554
No 303
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.42 E-value=0.53 Score=58.09 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=13.8
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|++||.|+|||+.+
T Consensus 40 AyLFtGPpGtGKTTLA 55 (944)
T PRK14949 40 AYLFTGTRGVGKTSLA 55 (944)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3589999999999984
No 304
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=86.36 E-value=0.75 Score=52.23 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=31.6
Q ss_pred chhHHhhCCCeEEEEcCCCChHHHH---HHHHHH-cCCcEEEEcccHhHHHHHHH
Q 003587 286 FPFARVMKRKIIYHCGPTNSGKTYN---ALQRFM-EAKKGIYCSPLRLLAMEVFD 336 (809)
Q Consensus 286 ~p~~~~l~grdviv~apTGSGKTl~---~L~~L~-~~~~~LvlsPtR~La~Q~~~ 336 (809)
+|++.-...+.++++|.||||||.+ .+..+. .+.++||.=|.-+.....++
T Consensus 7 v~l~~~~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 7 VPLPKDSENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp EEE-GGGGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH--
T ss_pred eecccchhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhcC
Confidence 4555567889999999999999987 333343 34456666688777554444
No 305
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=86.31 E-value=0.76 Score=50.61 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=14.3
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+++.||+|+|||+.+
T Consensus 38 ~lll~Gp~GtGKT~la 53 (337)
T PRK12402 38 HLLVQGPPGSGKTAAV 53 (337)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999873
No 306
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=86.29 E-value=0.68 Score=55.18 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.5
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
+-+|.+||.|+|||.++
T Consensus 39 hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAA 55 (559)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999883
No 307
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.05 E-value=1.6 Score=49.84 Aligned_cols=52 Identities=27% Similarity=0.446 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCChHHHHHH--H--H-HHcCCcEEEEc--ccHhHHHHHHHHHHh-cCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNAL--Q--R-FMEAKKGIYCS--PLRLLAMEVFDKVNA-LGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L--~--~-L~~~~~~Lvls--PtR~La~Q~~~~l~~-~g~~ 344 (809)
.++.++++||||+|||+.+. . . +..+.++.+++ +.|..+.++..+... .|++
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp 281 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP 281 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCC
Confidence 45678899999999999832 2 1 12334454444 888888887776643 3443
No 308
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.97 E-value=0.74 Score=55.05 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=32.0
Q ss_pred hCCCeEEEEcCCCChHHHH--HHHHHHcCCcEEEE---cccHhHHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEAKKGIYC---SPLRLLAMEVFD 336 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~L~~L~~~~~~Lvl---sPtR~La~Q~~~ 336 (809)
-.|+.+.++||.|||||++ .|+.+++.-.+=|+ .|.+.+=.....
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 4689999999999999998 46666654333233 387777666555
No 309
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.91 E-value=0.77 Score=54.80 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.0
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||..+
T Consensus 37 a~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 37 AYLFSGPRGCGKTSSA 52 (584)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999984
No 310
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=85.83 E-value=0.8 Score=51.87 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred hCCCeEEEEcCCCChHHHHH--HHHHHcC-CcE-EEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeee
Q 003587 292 MKRKIIYHCGPTNSGKTYNA--LQRFMEA-KKG-IYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVE 367 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~--L~~L~~~-~~~-LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie 367 (809)
-.|..|++.|+||+||++.+ +..+... ..+ .|-+.--+++....+ +.-+|..-+..+|...+... -++
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~-~eLFG~~kGaftGa~~~k~G-------lfe 170 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE-AELFGHEKGAFTGAQGGKAG-------LFE 170 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH-HHHhccccceeecccCCcCc-------hhe
Confidence 56889999999999999983 4433333 222 222232222222221 11467777777774443211 122
Q ss_pred ecccCCcccEEEEeccccccc
Q 003587 368 MVSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 368 ~lt~~rlv~~vVIDEAH~i~d 388 (809)
.+.- ..+.+||+|.+.-
T Consensus 171 ~A~G----GtLfLDEI~~LP~ 187 (403)
T COG1221 171 QANG----GTLFLDEIHRLPP 187 (403)
T ss_pred ecCC----CEEehhhhhhCCH
Confidence 2222 5789999999974
No 311
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.82 E-value=2.5 Score=49.79 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=56.8
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCC
Q 003587 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~ 535 (809)
.++|++ +..-+.+++..+.+..+..+.++||++++.+|.++..... +|+.+|+|+|..+-. +.++ +..||..+.
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~--~g~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVK--NGEILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHH--cCCCCEEECChHHHc-CcccCCCEEEEECC
Confidence 445555 4567788888888777889999999999999999888887 799999999975432 3343 777876654
No 312
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.80 E-value=1.4 Score=49.76 Aligned_cols=53 Identities=26% Similarity=0.268 Sum_probs=33.1
Q ss_pred hCCCeEEEEcCCCChHHHHH----HHHHHcCCcEEEEc--ccHhHHHHHHHHHHh-cCCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNA----LQRFMEAKKGIYCS--PLRLLAMEVFDKVNA-LGVY 344 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~----L~~L~~~~~~Lvls--PtR~La~Q~~~~l~~-~g~~ 344 (809)
-.++.++++||||+|||+.+ ......+.++.+++ |.|.-|.++...... .+++
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp 263 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE 263 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC
Confidence 46889999999999999872 22222344454443 778766555554443 3443
No 313
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.71 E-value=1.2 Score=52.17 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=40.8
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----c-CCcEEEEcccHhHHHHHHHHHHhcCCce
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----E-AKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~-~~~~LvlsPtR~La~Q~~~~l~~~g~~~ 345 (809)
..|+.+++.||+|+|||+-+++.+. + +..++|++- -+-..++.+.+.++|...
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGWDL 76 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCCCH
Confidence 3588999999999999998766654 3 457888873 466778888888887654
No 314
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.68 E-value=0.84 Score=55.33 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=42.0
Q ss_pred CeEEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHhcCCceeeee
Q 003587 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (809)
Q Consensus 295 rdviv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~ 349 (809)
+.++++||||||||.. .++.|+. .+.+||+=|--|+........++.|..+-++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEec
Confidence 4799999999999998 4555665 45666666999999988887777777665433
No 315
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.59 E-value=0.62 Score=50.66 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=45.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHcC-----------CcEEEEcccHhHHHHHHHHHH-hcCCceeeeecccccccccCcce
Q 003587 295 KIIYHCGPTNSGKTYNALQRFMEA-----------KKGIYCSPLRLLAMEVFDKVN-ALGVYCSLLTGQEKKLVPFSNHI 362 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~~~-----------~~~LvlsPtR~La~Q~~~~l~-~~g~~~~l~~g~~~~~~~~~~~i 362 (809)
.+++++|+||.|||..+-...... +..+|-+|...=....|..+- ++|.+..-...... ...++
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~----~~~~~ 137 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAK----LEQQV 137 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHH----HHHHH
Confidence 479999999999999742222111 122333577666666666553 34544322111000 00000
Q ss_pred eeeeeecccCCcccEEEEeccccccc
Q 003587 363 ACTVEMVSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 363 ~~tie~lt~~rlv~~vVIDEAH~i~d 388 (809)
..++..-. +.++||||+|.++.
T Consensus 138 ---~~llr~~~-vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 138 ---LRLLRRLG-VRMLIIDEFHNLLA 159 (302)
T ss_pred ---HHHHHHcC-CcEEEeechHHHhc
Confidence 01111111 78999999999875
No 316
>PF12846 AAA_10: AAA-like domain
Probab=85.57 E-value=1.1 Score=47.90 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=25.6
Q ss_pred CeEEEEcCCCChHHHHHH---HHH-HcCCcEEEEcccHhHHH
Q 003587 295 KIIYHCGPTNSGKTYNAL---QRF-MEAKKGIYCSPLRLLAM 332 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L---~~L-~~~~~~LvlsPtR~La~ 332 (809)
+.++++|+||||||..+. ..+ ..+..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 578999999999998832 223 34555566657655544
No 317
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.46 E-value=1.4 Score=47.31 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=14.2
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+++.||.|-|||+-+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 6899999999999864
No 318
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=85.44 E-value=1.4 Score=47.11 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=41.3
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH---cCCcEEEEcccHhHHHHHHHHHHhcCCcee
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM---EAKKGIYCSPLRLLAMEVFDKVNALGVYCS 346 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~---~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~ 346 (809)
-.|+.+++.|++|||||.-+++.+. +.+..++.+-+.+...++.+.+..+|....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~ 78 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLE 78 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHH
Confidence 3588999999999999998666554 344445555677888888888888776654
No 319
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=85.43 E-value=1.5 Score=45.57 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=34.1
Q ss_pred CCCeEEEEcCCCChHHHHHHH----HHHcCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~----~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.|..+++.||+|+|||+.+++ .+..+..++|++- -+.+.++.++.+.+|..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g~~ 73 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFGMD 73 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhCCC
Confidence 578999999999999987443 2334456666653 44456666666666543
No 320
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.29 E-value=1.8 Score=46.83 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCCChHHHHHH---HHHH-cCCcEEEEc--ccHhHHHHHHHHH-HhcC
Q 003587 293 KRKIIYHCGPTNSGKTYNAL---QRFM-EAKKGIYCS--PLRLLAMEVFDKV-NALG 342 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L---~~L~-~~~~~Lvls--PtR~La~Q~~~~l-~~~g 342 (809)
..+.++++||||+|||+.+. ..+. .+.+++++. +.|.-+.++...+ +..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 35678889999999998721 2223 344555554 6777766655544 3444
No 321
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=85.19 E-value=0.66 Score=51.12 Aligned_cols=40 Identities=33% Similarity=0.236 Sum_probs=27.9
Q ss_pred hCCCeEEEEcCCCChHHHH--HHHHHH-cCCcEEEEcccHhHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSPLRLLA 331 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~L~~L~-~~~~~LvlsPtR~La 331 (809)
-.+.+++++|.||||||+. +|.... ...++|.|--|.||-
T Consensus 171 ~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELq 213 (355)
T COG4962 171 GIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQ 213 (355)
T ss_pred hhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhc
Confidence 4456999999999999987 443333 334667666777663
No 322
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=85.17 E-value=2.7 Score=47.69 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHH----HHHc---CCcEEEEcccHh-HHHHHHHHHH
Q 003587 296 IIYHCGPTNSGKTYNALQ----RFME---AKKGIYCSPLRL-LAMEVFDKVN 339 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~----~L~~---~~~~LvlsPtR~-La~Q~~~~l~ 339 (809)
-.+..|..|||||.++.. .++. +.+++++.|+.. |...++..+.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~ 54 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIE 54 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHH
Confidence 467899999999988332 2223 445677778776 5555555554
No 323
>PRK05580 primosome assembly protein PriA; Validated
Probab=85.15 E-value=2.9 Score=51.08 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=57.6
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcCC
Q 003587 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d~ 535 (809)
.++|++ ++.-+.++...+.+..|..+..+||+++..+|.++..... .|..+|+|+|..+-. +.++ +..||..+.
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~--~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAK--RGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHH--cCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 455555 5677888888888877889999999999999998888887 789999999974322 3443 788876654
No 324
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=85.10 E-value=0.76 Score=53.93 Aligned_cols=16 Identities=31% Similarity=0.196 Sum_probs=14.5
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+++.||.|+|||..+
T Consensus 45 a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 45 GYLLTGIRGVGKTTSA 60 (507)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999983
No 325
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.10 E-value=1.7 Score=48.09 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCChHHHHH--HHH-H-HcCCcEEEEc--ccHhHHHHHHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYNA--LQR-F-MEAKKGIYCS--PLRLLAMEVFDKV 338 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~--L~~-L-~~~~~~Lvls--PtR~La~Q~~~~l 338 (809)
.++.++++||+|+|||+.+ |.. + ..+++++++. +.|..|.++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~ 164 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVW 164 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHH
Confidence 4678999999999999872 222 2 2345565554 5577665554443
No 326
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=85.08 E-value=1.3 Score=53.97 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=37.6
Q ss_pred CCeEEEEcCCCChHHHHHHH---HHHc-----CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 294 RKIIYHCGPTNSGKTYNALQ---RFME-----AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~---~L~~-----~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
...++|+|..|||||.+... .|+. ..++|+++.|+..|.++.+++.+.
T Consensus 15 ~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 45788999999999998433 3332 236799999999999999999764
No 327
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.97 E-value=2.2 Score=49.49 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=37.0
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
..|..+++.|++|+|||+.+++.+. .+++++|++.- +-..|+..+...+|..
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~ 147 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLP 147 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCC
Confidence 4578899999999999998555432 34578888743 4456777777776643
No 328
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.94 E-value=0.82 Score=54.71 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||.++
T Consensus 40 ayLf~Gp~G~GKtt~A 55 (576)
T PRK14965 40 AFLFTGARGVGKTSTA 55 (576)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999984
No 329
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.76 E-value=0.95 Score=52.77 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+|+.||+|+|||+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 38 AYIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999884
No 330
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=84.74 E-value=0.91 Score=51.97 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=33.4
Q ss_pred chhHHhhCCCeEEEEcCCCChHHHHH---HHHHH-cCCcEEEEcccHhHHHH
Q 003587 286 FPFARVMKRKIIYHCGPTNSGKTYNA---LQRFM-EAKKGIYCSPLRLLAME 333 (809)
Q Consensus 286 ~p~~~~l~grdviv~apTGSGKTl~~---L~~L~-~~~~~LvlsPtR~La~Q 333 (809)
+|++.-...+.++++|+||||||... +..+. .+.++||+=|..++...
T Consensus 34 ~~~~~~~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 34 LPFPKDAEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSK 85 (410)
T ss_pred EeCCcchhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHh
Confidence 34444566789999999999999873 22222 35677777798886543
No 331
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.72 E-value=0.91 Score=46.50 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=13.6
Q ss_pred eEEEEcCCCChHHHH
Q 003587 296 IIYHCGPTNSGKTYN 310 (809)
Q Consensus 296 dviv~apTGSGKTl~ 310 (809)
-++++||||||||+.
T Consensus 3 lilI~GptGSGKTTl 17 (198)
T cd01131 3 LVLVTGPTGSGKSTT 17 (198)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999998
No 332
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=84.56 E-value=1.4 Score=44.14 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=33.9
Q ss_pred EEEEcCCCChHHHHHHHHHHc-CCcEEEEcccHhHHHHHHHHHHh
Q 003587 297 IYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 297 viv~apTGSGKTl~~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
+++.|++|||||.-+.+.+.. +.+++|++-...+-.++.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999987776654 45889998777776666666554
No 333
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=84.54 E-value=1.2 Score=53.71 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=41.7
Q ss_pred CeEEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHhcC-Cceeeee
Q 003587 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALG-VYCSLLT 349 (809)
Q Consensus 295 rdviv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~g-~~~~l~~ 349 (809)
..++++||||||||.. .++.++. ++.+||+-|--|++......-++.| ..+-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfd 269 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLD 269 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEe
Confidence 5899999999999998 5666665 4456666699999888887777766 5555543
No 334
>PHA00350 putative assembly protein
Probab=84.51 E-value=1.9 Score=49.00 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHH----HHHcCCcEEE
Q 003587 296 IIYHCGPTNSGKTYNALQ----RFMEAKKGIY 323 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~----~L~~~~~~Lv 323 (809)
..++.|..|||||+.++. +.++.|+.||
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~ 34 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVI 34 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEE
Confidence 468899999999998543 2334556544
No 335
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=84.41 E-value=0.87 Score=50.05 Aligned_cols=20 Identities=45% Similarity=0.438 Sum_probs=18.1
Q ss_pred hhCCCeEEEEcCCCChHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~ 310 (809)
+..|+.++++||||||||+.
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 46789999999999999987
No 336
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.41 E-value=2.7 Score=55.33 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=51.4
Q ss_pred hhHHhhC--CCeEEEEcCCCChHHHH---HHHHHH---c--CCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccccccc
Q 003587 287 PFARVMK--RKIIYHCGPTNSGKTYN---ALQRFM---E--AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356 (809)
Q Consensus 287 p~~~~l~--grdviv~apTGSGKTl~---~L~~L~---~--~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~ 356 (809)
++..++. ++.+++.|..|+|||+. ++..+. + +..++.++||--.+..+.+ .|+.+.-+..-.....
T Consensus 843 Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e----~Gi~A~TIasfL~~~~ 918 (1623)
T PRK14712 843 ATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS----AGVDAQTLASFLHDTQ 918 (1623)
T ss_pred HHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH----hCchHhhHHHHhcccc
Confidence 3444564 58899999999999998 233322 2 3456778999887766643 3554322111100000
Q ss_pred ccCcceeeeeeecccCCcccEEEEeccccccc
Q 003587 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 357 ~~~~~i~~tie~lt~~rlv~~vVIDEAH~i~d 388 (809)
.. .... . .+....+++|||||=|+..
T Consensus 919 ~~--~~~~--~--~~~~~~~llIVDEASMV~~ 944 (1623)
T PRK14712 919 LQ--QRSG--E--TPDFSNTLFLLDESSMVGN 944 (1623)
T ss_pred ch--hhcc--c--CCCCCCcEEEEEccccccH
Confidence 00 0000 0 1111158999999999975
No 337
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.37 E-value=1.9 Score=49.54 Aligned_cols=85 Identities=24% Similarity=0.293 Sum_probs=45.3
Q ss_pred hCCCeEEEEcCCCChHHHHH--HH-HHH--cC-CcEEEEc--ccHhHHHHHHHHHH-hcCCceeeeecccccccccCcce
Q 003587 292 MKRKIIYHCGPTNSGKTYNA--LQ-RFM--EA-KKGIYCS--PLRLLAMEVFDKVN-ALGVYCSLLTGQEKKLVPFSNHI 362 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~--L~-~L~--~~-~~~Lvls--PtR~La~Q~~~~l~-~~g~~~~l~~g~~~~~~~~~~~i 362 (809)
..++.++++||||+|||+.+ |. .+. .+ .++.++. |.|.-+.++..... ..++++...... .. +
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~--~~------l 290 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDP--KE------L 290 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCH--Hh------H
Confidence 45789999999999999872 21 222 33 3454444 77765555544433 344443221110 00 0
Q ss_pred eeeeeecccCCcccEEEEecccccc
Q 003587 363 ACTVEMVSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 363 ~~tie~lt~~rlv~~vVIDEAH~i~ 387 (809)
. ..+.....+++|+||-+-+..
T Consensus 291 ~---~~l~~~~~~DlVlIDt~G~~~ 312 (424)
T PRK05703 291 A---KALEQLRDCDVILIDTAGRSQ 312 (424)
T ss_pred H---HHHHHhCCCCEEEEeCCCCCC
Confidence 0 001111127999999986643
No 338
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=84.24 E-value=6.6 Score=47.18 Aligned_cols=126 Identities=16% Similarity=0.222 Sum_probs=74.3
Q ss_pred cCcHHHHHHHHHHHhCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHHHH--HH-HH---cCCcEEEEcccHhHHHHHH
Q 003587 262 EFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNAL--QR-FM---EAKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 262 ~f~~~l~~i~~~l~~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~~L--~~-L~---~~~~~LvlsPtR~La~Q~~ 335 (809)
..|+.-+++-+.++ .-|.-|.-.-.+....+.|-.+...|==.|||.... .+ ++ .+-.++|.+|.+..+..++
T Consensus 223 klp~~a~r~~~~lk-~~Fdi~~~s~~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF 301 (738)
T PHA03368 223 LLGDHAERVERFLR-TVFNTPLFSDAAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVF 301 (738)
T ss_pred ccHHHHHHHHHHHH-HHcCCccccHHHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHH
Confidence 34554444444442 233333333334446788888999999999998622 21 22 4668899999999999999
Q ss_pred HHHHhcCC------ceeeeecccccccccCcceeeeeeeccc-------CCcccEEEEecccccccc
Q 003587 336 DKVNALGV------YCSLLTGQEKKLVPFSNHIACTVEMVST-------DEMYDVAVIDEIQMMSDA 389 (809)
Q Consensus 336 ~~l~~~g~------~~~l~~g~~~~~~~~~~~i~~tie~lt~-------~rlv~~vVIDEAH~i~d~ 389 (809)
+++...-. .+..+.|+.. ...+..-...++.+.+. |..++++|||||+.+.+.
T Consensus 302 ~eI~~~le~~f~~~~v~~vkGe~I-~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 302 EEIGARLRQWFGASRVDHVKGETI-SFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred HHHHHHHhhhcchhheeeecCcEE-EEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHH
Confidence 99887411 1222333211 01111111124555422 223999999999999874
No 339
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=84.20 E-value=2.5 Score=50.72 Aligned_cols=87 Identities=28% Similarity=0.308 Sum_probs=49.0
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeeccc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVST 371 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~lt~ 371 (809)
++|-.++++||+|.|||- |+..+++.+...-+..++ |..........|-. |..=+-|
T Consensus 348 ~kGpILcLVGPPGVGKTS--------------------LgkSIA~al~RkfvR~sL--GGvrDEAEIRGHRR-TYIGamP 404 (782)
T COG0466 348 LKGPILCLVGPPGVGKTS--------------------LGKSIAKALGRKFVRISL--GGVRDEAEIRGHRR-TYIGAMP 404 (782)
T ss_pred CCCcEEEEECCCCCCchh--------------------HHHHHHHHhCCCEEEEec--CccccHHHhccccc-cccccCC
Confidence 677899999999999994 566777777654333333 33222111111111 1111223
Q ss_pred CCc----------ccEEEEecccccccccchhHHHHHHhhc
Q 003587 372 DEM----------YDVAVIDEIQMMSDACRGYAWTRALLGL 402 (809)
Q Consensus 372 ~rl----------v~~vVIDEAH~i~d~~~g~~~~~ill~l 402 (809)
|+. =-++++||+|.|...-+|. ...+++.+
T Consensus 405 GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGD-PaSALLEV 444 (782)
T COG0466 405 GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGD-PASALLEV 444 (782)
T ss_pred hHHHHHHHHhCCcCCeEEeechhhccCCCCCC-hHHHHHhh
Confidence 332 2589999999998764553 33444433
No 340
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.19 E-value=1.2 Score=49.15 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=34.4
Q ss_pred CCCCCCCc-cchhHHhhCCCeEEEEcCCCChHHHH--HHHHHH-cCCcEEEEcccHhH
Q 003587 277 ADLTKPHT-WFPFARVMKRKIIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSPLRLL 330 (809)
Q Consensus 277 ~g~~~Pt~-~~p~~~~l~grdviv~apTGSGKTl~--~L~~L~-~~~~~LvlsPtR~L 330 (809)
.|.-.+.. ++-+..+..+++++++|+||||||+. ++..+. ...+.+.+--|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 44444433 34444568999999999999999988 333333 34455665555554
No 341
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=84.07 E-value=1.5 Score=54.01 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHH---HHc-----CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQR---FME-----AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~---L~~-----~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
....++|+|..|||||.+.... |+. ...+|+++.|+..|.++.+++.++
T Consensus 16 ~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 16 PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 3457899999999999984333 332 236799999999999999999875
No 342
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=83.90 E-value=1.7 Score=43.80 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccH
Q 003587 294 RKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLR 328 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR 328 (809)
|+-.++.||=+||||...+..+. .+.+++++-|..
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 45678999999999998666553 355677777753
No 343
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.88 E-value=1.1 Score=52.36 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.5
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+++.||.|+|||+++
T Consensus 40 ayLf~Gp~G~GKTtlA 55 (486)
T PRK14953 40 AYIFAGPRGTGKTTIA 55 (486)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3578999999999883
No 344
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=83.74 E-value=1 Score=53.76 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.6
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.+-.++++||||||||+.
T Consensus 315 ~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 455789999999999987
No 345
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=83.62 E-value=1.7 Score=45.58 Aligned_cols=49 Identities=10% Similarity=-0.032 Sum_probs=34.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH---HcCC-cEEEEcccHhHHHHHHHHHHhc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRF---MEAK-KGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L---~~~~-~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
+|++.+..+-.|.|||.++++.+ +.++ +-+.+.=.++|..|..+.+...
T Consensus 40 ~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 40 SGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred CCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 57899999999999999955433 3333 4333333457888888888653
No 346
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.40 E-value=4.3 Score=49.68 Aligned_cols=76 Identities=12% Similarity=0.181 Sum_probs=56.0
Q ss_pred CEEEEe-chhHHHHHHHHHHH---hcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccc-cccccccc-ccEEEE
Q 003587 459 DCVVAF-SRREIFEVKMAIEK---HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA-VGMGLNLN-IRRVVF 532 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~---~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda-l~~GIDip-V~~VI~ 532 (809)
.++|.. ++.-+.+.+..+.+ ..|.++..+||+++..+|..+++... +|+.+|+|+|.. +...+.++ +.+||.
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~--~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA--SGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh--CCCCCEEEchHHHhcccchhcccceEEE
Confidence 344444 55555555555543 34789999999999999999999998 799999999975 44456675 888887
Q ss_pred cCCC
Q 003587 533 YSLS 536 (809)
Q Consensus 533 ~d~~ 536 (809)
-...
T Consensus 390 DE~H 393 (681)
T PRK10917 390 DEQH 393 (681)
T ss_pred echh
Confidence 6553
No 347
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=83.19 E-value=1.6 Score=53.69 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHH---HHc-----CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQR---FME-----AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~---L~~-----~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
....++|.|..|||||.+.... |+. ...+|+|+-|+..|.++.+++.++
T Consensus 21 ~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 21 PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 3457899999999999984333 332 236799999999999999999775
No 348
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=83.07 E-value=1.9 Score=53.23 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=23.3
Q ss_pred cchHHHHHHHHhhhcccCCc-cccCCcchHHHHHHHHHHhc
Q 003587 613 NYTFCQLLEKFGENCRLDGS-YFLCRHDHIKKVANMLEKVQ 652 (809)
Q Consensus 613 ~~~~~~ll~~f~e~~~~~~~-~~~c~~~~~~~~a~~L~~~~ 652 (809)
..+..+|.+.|...+...+. ...|.... .+..+|.++.
T Consensus 1040 ~i~TGEVYerYk~Lce~~Gk~iGv~plTq--RV~d~L~eL~ 1078 (1164)
T PTZ00112 1040 IIPYKKVLNRYKVLVETSGKYIGMCSNNE--LFKIMLDKLV 1078 (1164)
T ss_pred ceeHHHHHHHHHHHHHhhhhhcCCCCcHH--HHHHHHHHHH
Confidence 36788888888887764432 33454333 5666666653
No 349
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=82.96 E-value=0.82 Score=55.32 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred CCCeEEEEeccccccccccc-ccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCCCCCCce-----------EEEEEe
Q 003587 507 DNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDG-----------LTTTLN 574 (809)
Q Consensus 507 ~g~~~ILVATdal~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G-----------~~i~~~ 574 (809)
+...+.|.+--++-.|.|=| |=.++-... ..|-.+=.|.+||.-|--- ...| ....++
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~---------S~SeiSK~QeVGRGLRLaV-Ne~G~RV~~~~~~~n~L~vlv 550 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRS---------SGSEISKLQEVGRGLRLAV-NENGERVTKDFDFPNELTVLV 550 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecC---------CCcchHHHHHhccceeeee-ccccceecccccccceEEEEe
Confidence 46689999999999999998 776666665 5577888999999999421 0122 233455
Q ss_pred cccHHHHHHHHcCCch
Q 003587 575 LDDLDYLIECLKQPFE 590 (809)
Q Consensus 575 ~~d~~~l~~~l~~~~~ 590 (809)
+.+.....+.|.+.+.
T Consensus 551 ~~sek~Fv~~LqkEI~ 566 (985)
T COG3587 551 NESEKDFVKALQKEIN 566 (985)
T ss_pred cccHHHHHHHHHHHHH
Confidence 6777777776655443
No 350
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.88 E-value=5.6 Score=42.92 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCChHHHHH--HHH-HHc-CCcEEEE-c-ccH-hHHHHHHHHHHhcCCceeeeecccccccccCcceeee
Q 003587 293 KRKIIYHCGPTNSGKTYNA--LQR-FME-AKKGIYC-S-PLR-LLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACT 365 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~--L~~-L~~-~~~~Lvl-s-PtR-~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t 365 (809)
.+..++++||+|+|||..+ +.. +.. +..+.++ + +.| ..+.|........+.++.. ..... .+.-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~--~~~~~------~l~~~ 145 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA------AMTRA 145 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEe--cCCHH------HHHHH
Confidence 4578999999999999872 222 222 3344444 3 555 4455555544444433321 11100 01111
Q ss_pred eeecccCCcccEEEEecccccc
Q 003587 366 VEMVSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 366 ie~lt~~rlv~~vVIDEAH~i~ 387 (809)
++.+.....+++++||-+=+..
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKNY 167 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCCc
Confidence 1222221237999999997764
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=82.85 E-value=2.1 Score=49.24 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=30.4
Q ss_pred CeEEEEcCCCChHHHHHH---HHHH-c-CCcEEEEc--ccHhHHHHHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNAL---QRFM-E-AKKGIYCS--PLRLLAMEVFDKVN 339 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L---~~L~-~-~~~~Lvls--PtR~La~Q~~~~l~ 339 (809)
..++++|++|+|||+.+. ..+. . +.++++++ +.|..|.++...+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a 152 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLG 152 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHH
Confidence 578899999999998732 1222 3 44555554 88888876665554
No 352
>PRK13342 recombination factor protein RarA; Reviewed
Probab=82.78 E-value=2.2 Score=48.94 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.3
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+++.||+|+|||+.+
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6889999999999884
No 353
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=82.70 E-value=1.4 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHc
Q 003587 294 RKIIYHCGPTNSGKTYNALQRFME 317 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L~~ 317 (809)
++.++++||||||||..++.-...
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457899999999999886654433
No 354
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=82.65 E-value=3 Score=55.63 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=51.6
Q ss_pred chhHHhhC--CCeEEEEcCCCChHHHH--HHHHHH----c--CCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccc
Q 003587 286 FPFARVMK--RKIIYHCGPTNSGKTYN--ALQRFM----E--AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL 355 (809)
Q Consensus 286 ~p~~~~l~--grdviv~apTGSGKTl~--~L~~L~----~--~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~ 355 (809)
.++..++. .+.+++.|..|+|||+. .+..++ . +..++.++||---|..+. ..|+.+.-+..-....
T Consensus 974 ~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e~Gi~A~TI~s~L~~~ 1049 (1747)
T PRK13709 974 AATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----SAGVDAQTLASFLHDT 1049 (1747)
T ss_pred HHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----hcCcchhhHHHHhccc
Confidence 34444565 46899999999999998 232222 1 345677899988776654 3455433221111000
Q ss_pred cccCcceeeeeeecccCCcccEEEEeccccccc
Q 003587 356 VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 356 ~~~~~~i~~tie~lt~~rlv~~vVIDEAH~i~d 388 (809)
... . ..-+ .+...-+++||||+=|+..
T Consensus 1050 ~~~---~-~~~~--~~~~~~~llIVDEaSMv~~ 1076 (1747)
T PRK13709 1050 QLQ---Q-RSGE--TPDFSNTLFLLDESSMVGN 1076 (1747)
T ss_pred ccc---c-cccc--CCCCCCcEEEEEccccccH
Confidence 000 0 0000 0111148999999999975
No 355
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.56 E-value=1 Score=53.34 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||+.+
T Consensus 40 a~Lf~Gp~G~GKTt~A 55 (527)
T PRK14969 40 AYLFTGTRGVGKTTLA 55 (527)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999883
No 356
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.47 E-value=1.1 Score=53.82 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|++||.|+|||+.+
T Consensus 40 a~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 40 AYLFTGTRGVGKTTVS 55 (618)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999983
No 357
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=82.47 E-value=2.4 Score=44.37 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=30.1
Q ss_pred hCCCeEEEEcCCCChHHHHHHHH----HHc-CCcEEEEc---ccHhHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQR----FME-AKKGIYCS---PLRLLAMEV 334 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~----L~~-~~~~Lvls---PtR~La~Q~ 334 (809)
..|..+++.|+||+|||..+++. +.. +..++|++ |..+++..+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 45788999999999999874443 234 66778876 555555544
No 358
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.25 E-value=1.7 Score=47.88 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=54.5
Q ss_pred eEEEEcCCCChHHHHH---HHHHHc-CCcEEEEc--ccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeec
Q 003587 296 IIYHCGPTNSGKTYNA---LQRFME-AKKGIYCS--PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (809)
Q Consensus 296 dviv~apTGSGKTl~~---L~~L~~-~~~~Lvls--PtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~l 369 (809)
.++++|-.|+|||+.. ...+.. +.++++.+ --|+-|.+|.+.+.+. ..+.++.+. .+..+ +..+...++.+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-~gv~vI~~~-~G~Dp-AaVafDAi~~A 217 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-LGVPVISGK-EGADP-AAVAFDAIQAA 217 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH-hCCeEEccC-CCCCc-HHHHHHHHHHH
Confidence 6889999999999982 233334 44555544 6799998888777653 334445443 22222 21222233333
Q ss_pred ccCCcccEEEEeccccccc
Q 003587 370 STDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 370 t~~rlv~~vVIDEAH~i~d 388 (809)
-. +.+++|+||=|-++..
T Consensus 218 ka-r~~DvvliDTAGRLhn 235 (340)
T COG0552 218 KA-RGIDVVLIDTAGRLHN 235 (340)
T ss_pred HH-cCCCEEEEeCcccccC
Confidence 32 2389999999988864
No 359
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.24 E-value=1.1 Score=53.42 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.7
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
+-+|+.||.|+|||..+
T Consensus 39 hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA 55 (605)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45789999999999984
No 360
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=82.20 E-value=1.7 Score=44.56 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=25.9
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSP 326 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsP 326 (809)
..|+.+.+.||+|||||..+++.+. .+.+++|+.-
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3578899999999999998655443 3456777764
No 361
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=82.19 E-value=1.1 Score=54.18 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.8
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
+.+|++||.|+|||+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlA 55 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIA 55 (709)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 36899999999999884
No 362
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=82.18 E-value=2.5 Score=57.49 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=36.7
Q ss_pred hhHHhhC--CCeEEEEcCCCChHHHH--HHHHHH--cCCcEEEEcccHhHHHHHHHHH
Q 003587 287 PFARVMK--RKIIYHCGPTNSGKTYN--ALQRFM--EAKKGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 287 p~~~~l~--grdviv~apTGSGKTl~--~L~~L~--~~~~~LvlsPtR~La~Q~~~~l 338 (809)
++..++. .+..++.|+.|+|||+. .+..+. .+..+++++||---|..+.+..
T Consensus 437 Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~ 494 (1960)
T TIGR02760 437 AVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI 494 (1960)
T ss_pred HHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh
Confidence 3334454 47899999999999998 333333 3457788889998777776653
No 363
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=82.09 E-value=1.9 Score=48.05 Aligned_cols=40 Identities=28% Similarity=0.247 Sum_probs=26.4
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHHc-CCcEEEEcccHhH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFME-AKKGIYCSPLRLL 330 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~~-~~~~LvlsPtR~L 330 (809)
+..+++++++|+||||||+. ++..+.. ..+.+++--+.||
T Consensus 175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 45678999999999999986 3333332 2344555455555
No 364
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=82.08 E-value=2.6 Score=44.08 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhcCCce
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~ 345 (809)
.|..+++.|++|+|||+-+.+.+ ..+.+++|++= .+-..++.+++..+|...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQMESVKIDI 79 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHHHHHCCCCh
Confidence 47789999999999998754433 34556666653 344466777777776543
No 365
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=81.96 E-value=2.1 Score=51.92 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=44.7
Q ss_pred HHHHHhCCCCCCCc--cchhHHhhCCCeEEEEcCCCChHHHH---HHHHHH-cCCcEEEEcccHhHHHHHH
Q 003587 271 RAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYN---ALQRFM-EAKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 271 ~~~l~~~g~~~Pt~--~~p~~~~l~grdviv~apTGSGKTl~---~L~~L~-~~~~~LvlsPtR~La~Q~~ 335 (809)
.+.+++.+-..|.. -+|++.-...+.++++|-||||||.+ .|..+. ++.++||.=|.-+.+..-+
T Consensus 160 ~k~lk~~~~~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i~~LL~~ir~RGdrAIIyD~~GeFv~~FY 230 (732)
T PRK13700 160 ARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYY 230 (732)
T ss_pred HHHHHhcCCCCCeeEccccCCcchhhcceEEeCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHhc
Confidence 35566666555544 46777778999999999999999998 333343 4456666668877665443
No 366
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.91 E-value=1.6 Score=48.98 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.8
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
..+..++++||||||||+.
T Consensus 132 ~~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTL 150 (358)
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 3577899999999999987
No 367
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=81.66 E-value=5.5 Score=46.56 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=34.8
Q ss_pred CeEEEEcCCCChHHHH-H---HHHHH-c---CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 295 KIIYHCGPTNSGKTYN-A---LQRFM-E---AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 295 rdviv~apTGSGKTl~-~---L~~L~-~---~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
+.+++.-|=|.|||.. + +-.+. . +..++++++++.-|..+++.+..+
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3577788999999987 2 22222 2 345678889999999999988875
No 368
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.52 E-value=1.8 Score=51.89 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.5
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
+.+|+.||.|+|||..+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA 55 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTA 55 (585)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34689999999999983
No 369
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=81.47 E-value=1.3 Score=45.79 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHcCCcEEEE
Q 003587 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYC 324 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~~L~~~~~~Lvl 324 (809)
.+++.||||+|||..++....+-+..||+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~ 31 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVIS 31 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEE
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEE
Confidence 57899999999998865544433333443
No 370
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=81.43 E-value=2.2 Score=42.74 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=30.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHc-CCcEEEEcccHhHHHHHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
..+++.|++|||||..+...... +...+|++.....-.++.+++.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~ 47 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIA 47 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHH
Confidence 35899999999999986655544 3456777654444445555553
No 371
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=81.31 E-value=1.1 Score=52.35 Aligned_cols=17 Identities=53% Similarity=0.690 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
+.-++++||||||||+.
T Consensus 242 ~GlilitGptGSGKTTt 258 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTT 258 (486)
T ss_pred CCEEEEEcCCCCCHHHH
Confidence 34689999999999988
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.20 E-value=2.9 Score=47.98 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=30.9
Q ss_pred CeEEEEcCCCChHHHHH--HH-HHH-cCCcEEEEc--ccHhHHHHHHHHHHh
Q 003587 295 KIIYHCGPTNSGKTYNA--LQ-RFM-EAKKGIYCS--PLRLLAMEVFDKVNA 340 (809)
Q Consensus 295 rdviv~apTGSGKTl~~--L~-~L~-~~~~~Lvls--PtR~La~Q~~~~l~~ 340 (809)
..++++|++|+|||+.+ |. .+. .+.++++++ |.|.-|.++.+.+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 57889999999999872 22 222 344555554 788888777665544
No 373
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=81.08 E-value=1.5 Score=49.00 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=16.6
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
..+..++++||||||||+.
T Consensus 120 ~~~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTT 138 (343)
T ss_pred hcCcEEEEECCCCCCHHHH
Confidence 3467899999999999998
No 374
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=81.01 E-value=3.1 Score=45.36 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=14.2
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+++.||.|+|||..+
T Consensus 26 alL~~Gp~G~Gktt~a 41 (325)
T COG0470 26 ALLFYGPPGVGKTTAA 41 (325)
T ss_pred eeeeeCCCCCCHHHHH
Confidence 3899999999999984
No 375
>PLN02165 adenylate isopentenyltransferase
Probab=80.94 E-value=1.6 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=17.9
Q ss_pred hCCCeEEEEcCCCChHHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQ 313 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~ 313 (809)
..|+.++++||||||||..++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 4567899999999999987543
No 376
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=80.75 E-value=7.3 Score=48.43 Aligned_cols=14 Identities=0% Similarity=-0.140 Sum_probs=12.0
Q ss_pred Eecccccccccccc
Q 003587 514 VASDAVGMGLNLNI 527 (809)
Q Consensus 514 VATdal~~GIDipV 527 (809)
|+|.....|+|+|-
T Consensus 431 ~~~~~~~e~~d~~~ 444 (814)
T TIGR00596 431 FEIIDEENDIDIYS 444 (814)
T ss_pred ccccccccccccch
Confidence 78888889999975
No 377
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=80.75 E-value=2.7 Score=51.20 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHH---HH-c----CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQR---FM-E----AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~---L~-~----~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
....++|+|..|||||.+.+.. ++ . ....++|+.|+..|.++.+++.+.
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 3567999999999999984433 33 2 235788889999999999999764
No 378
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=80.73 E-value=1.2 Score=53.70 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=13.5
Q ss_pred EEEEcCCCChHHHHH
Q 003587 297 IYHCGPTNSGKTYNA 311 (809)
Q Consensus 297 viv~apTGSGKTl~~ 311 (809)
+|+.||.|+|||+.+
T Consensus 41 yLf~Gp~GvGKTTlA 55 (647)
T PRK07994 41 YLFSGTRGVGKTTIA 55 (647)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999983
No 379
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=80.64 E-value=2.8 Score=50.14 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=41.1
Q ss_pred eEEEEcCCCChHHHH--HH-HHHHc--CCcEEEEcccHhHHHHHHHHHHhcCCceeeeecccccccccCcceeeeeeecc
Q 003587 296 IIYHCGPTNSGKTYN--AL-QRFME--AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370 (809)
Q Consensus 296 dviv~apTGSGKTl~--~L-~~L~~--~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~tie~lt 370 (809)
.+++.|++|+|||+. ++ ..+.. .+..++..+..+++.+....+... . ..... ..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~-~------~~~f~-----~~--------- 374 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDG-K------GDSFR-----RR--------- 374 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhc-c------HHHHH-----HH---------
Confidence 488999999999976 22 22322 233344455666776666555431 0 00000 00
Q ss_pred cCCcccEEEEeccccccc
Q 003587 371 TDEMYDVAVIDEIQMMSD 388 (809)
Q Consensus 371 ~~rlv~~vVIDEAH~i~d 388 (809)
-+.+++||||++|.+..
T Consensus 375 -y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 375 -YREMDILLVDDIQFLED 391 (617)
T ss_pred -hhcCCEEEEehhccccC
Confidence 01268999999999863
No 380
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.62 E-value=1.5 Score=51.56 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.0
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-++++||.|+|||+.+
T Consensus 38 a~Lf~GppGtGKTTlA 53 (504)
T PRK14963 38 AYLFSGPRGVGKTTTA 53 (504)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4699999999999983
No 381
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=80.53 E-value=1.1 Score=41.27 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=13.0
Q ss_pred EEEEcCCCChHHHH
Q 003587 297 IYHCGPTNSGKTYN 310 (809)
Q Consensus 297 viv~apTGSGKTl~ 310 (809)
++++||+|||||+.
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999987
No 382
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=80.46 E-value=3 Score=43.28 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.|..+++.|++|+|||..+++.+ ..+..++|++- .+-..++.+++..+|..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGWD 69 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 47789999999999998754443 34556777653 34567778888777543
No 383
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.39 E-value=3.1 Score=48.48 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCChHHHHH--HHH-H-H-cCC-cE-EEEc-ccHhHHHHHHHHHHh-cCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNA--LQR-F-M-EAK-KG-IYCS-PLRLLAMEVFDKVNA-LGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~--L~~-L-~-~~~-~~-Lvls-PtR~La~Q~~~~l~~-~g~~ 344 (809)
.|+.+.++||||+|||+.+ |.. + . .+. ++ ++-+ +-|.-+.++...+.+ +|++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 5789999999999999982 221 2 2 232 33 3333 667767666665543 3443
No 384
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.24 E-value=1.5 Score=47.36 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.8
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRF 315 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L 315 (809)
+.+++.++++||||+|||...-..+
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHHhhh
Confidence 4689999999999999999854444
No 385
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=80.19 E-value=3.4 Score=47.73 Aligned_cols=51 Identities=27% Similarity=0.311 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCChHHHHH--H-HHHHc-CCcEEEEc--ccHhHHHHHHHHHHh-cCCc
Q 003587 294 RKIIYHCGPTNSGKTYNA--L-QRFME-AKKGIYCS--PLRLLAMEVFDKVNA-LGVY 344 (809)
Q Consensus 294 grdviv~apTGSGKTl~~--L-~~L~~-~~~~Lvls--PtR~La~Q~~~~l~~-~g~~ 344 (809)
...++++|+||+|||+.+ | ..+.. +.++++++ +.|.-|.++...+.. .+++
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 457899999999999883 2 22333 34555554 667766666655543 3443
No 386
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=80.06 E-value=1.9 Score=44.89 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=25.7
Q ss_pred hCCCeEEEEcCCCChHHHH---HHHHHH-cC-CcEEEEcccHh
Q 003587 292 MKRKIIYHCGPTNSGKTYN---ALQRFM-EA-KKGIYCSPLRL 329 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~---~L~~L~-~~-~~~LvlsPtR~ 329 (809)
+-++.+.+.|.||||||.. .+..+. .. ..+||+=|.=|
T Consensus 21 l~~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 21 LFNRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred hccceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 3357889999999999988 455555 33 34455546543
No 387
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=80.03 E-value=1.9 Score=52.43 Aligned_cols=16 Identities=38% Similarity=0.521 Sum_probs=14.0
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|.+||.|+|||.++
T Consensus 42 AYLF~GP~GtGKTt~A 57 (725)
T PRK07133 42 AYLFSGPRGTGKTSVA 57 (725)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4689999999999884
No 388
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=79.96 E-value=4.7 Score=39.89 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.5
Q ss_pred eEEEEcCCCChHHHHHH
Q 003587 296 IIYHCGPTNSGKTYNAL 312 (809)
Q Consensus 296 dviv~apTGSGKTl~~L 312 (809)
-+|+.||.|+||+..++
T Consensus 21 a~L~~G~~g~gk~~~a~ 37 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLAL 37 (162)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57999999999998843
No 389
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=79.89 E-value=1.5 Score=53.07 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=38.2
Q ss_pred CCeEEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHhcC
Q 003587 294 RKIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALG 342 (809)
Q Consensus 294 grdviv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~g 342 (809)
...++++||||||||.. .++.|+. .+.+||+=|--|+........++.|
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G 194 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG 194 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC
Confidence 35899999999999998 5666665 4566676799999888777766665
No 390
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.87 E-value=1.6 Score=51.64 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||+.+
T Consensus 40 a~Lf~Gp~GvGKTTlA 55 (546)
T PRK14957 40 AYLFTGTRGVGKTTLG 55 (546)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999983
No 391
>PRK14873 primosome assembly protein PriA; Provisional
Probab=79.84 E-value=5.6 Score=48.39 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=56.0
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEcC
Q 003587 459 DCVVAF-SRREIFEVKMAIEKHTN-HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYS 534 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g-~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~d 534 (809)
.++|.+ ....+.++...|.+..| ..+.++|+++++.+|.++..... +|+.+|+|.|-.+- =.-++ ...||..+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~--~G~~~IViGtRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVL--RGQARVVVGTRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHh--CCCCcEEEEcceeE-EeccCCCCEEEEEc
Confidence 345555 46788889999988776 78999999999999999999998 89999999996432 22332 56676655
No 392
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.62 E-value=3.1 Score=45.73 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHHHcCC-cEEEEcccHhHHHHHHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN---ALQRFMEAK-KGIYCSPLRLLAMEVFDKV 338 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~---~L~~L~~~~-~~LvlsPtR~La~Q~~~~l 338 (809)
.++.+++.||+|+|||+. +...+...+ .++++ ..-+|+.++...+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~-~~~~l~~~lk~~~ 203 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL-HFPEFIRELKNSI 203 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE-EHHHHHHHHHHHH
Confidence 456899999999999987 233344444 44444 3335666665544
No 393
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=79.51 E-value=4 Score=49.43 Aligned_cols=52 Identities=21% Similarity=0.089 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCChHHHHH----HHHHHcCCcEEEEcccHh--HHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNA----LQRFMEAKKGIYCSPLRL--LAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~----L~~L~~~~~~LvlsPtR~--La~Q~~~~l~~~g~~ 344 (809)
..+.++++|+||+|||..+ .+.+..+..+|++=|-.. |...+...++..|..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4578999999999999873 233334444555557654 888888888887765
No 394
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=79.31 E-value=1.6 Score=48.07 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH----------cCCcEEEEc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM----------EAKKGIYCS 325 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~----------~~~~~Lvls 325 (809)
.|..+.+.||+|+|||..+++... .+++++|+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 468899999999999988655432 245788886
No 395
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=79.21 E-value=2.3 Score=47.97 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.6
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.+..++++||||||||+.
T Consensus 148 ~~GlilI~G~TGSGKTT~ 165 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL 165 (372)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 445789999999999987
No 396
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.01 E-value=18 Score=43.89 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=42.9
Q ss_pred hhcCCChhhhhhhhhhhHhhhhccCcHHHHHHHHHHHhCCCCCCCc---cchhHHhhCCCeEEEEcCCCChHHHHHHHHH
Q 003587 239 VWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHT---WFPFARVMKRKIIYHCGPTNSGKTYNALQRF 315 (809)
Q Consensus 239 ~~~~~~~~~~~~llp~f~~~~~~~f~~~l~~i~~~l~~~g~~~Pt~---~~p~~~~l~grdviv~apTGSGKTl~~L~~L 315 (809)
.++..++..-+.++.....|-..-|.....+++. ...++.++-- .-|.. -=..|.++++||.|-|||+.|=...
T Consensus 271 tdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~--s~~~~~ke~~~~~~~~s~-RP~kKilLL~GppGlGKTTLAHViA 347 (877)
T KOG1969|consen 271 TDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLA--SKGPTEKEVLDMELDPSK-RPPKKILLLCGPPGLGKTTLAHVIA 347 (877)
T ss_pred HHHhcchhHHHHHHHHHHhhcHHhhcchHhhhcc--ccccchhhhhhcccCccC-CCccceEEeecCCCCChhHHHHHHH
Confidence 3444455566778888888887777743332211 1112222111 01110 0235789999999999998754444
Q ss_pred HcCCc
Q 003587 316 MEAKK 320 (809)
Q Consensus 316 ~~~~~ 320 (809)
..+|.
T Consensus 348 kqaGY 352 (877)
T KOG1969|consen 348 KQAGY 352 (877)
T ss_pred HhcCc
Confidence 44443
No 397
>PRK13764 ATPase; Provisional
Probab=78.80 E-value=2.3 Score=50.80 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=24.6
Q ss_pred hCCCeEEEEcCCCChHHHH--HHH-HHHcCCcEE-EEcccHhH
Q 003587 292 MKRKIIYHCGPTNSGKTYN--ALQ-RFMEAKKGI-YCSPLRLL 330 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~--~L~-~L~~~~~~L-vlsPtR~L 330 (809)
..++.++++||||||||+. +|. .+...++.+ .+--.++|
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccc
Confidence 4467899999999999987 222 333344443 44344554
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.78 E-value=12 Score=44.05 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=29.5
Q ss_pred hCCCeEEEEcCCCChHHHHH--HHH-HH-c--CCcEEEEc--ccHhHHHHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNA--LQR-FM-E--AKKGIYCS--PLRLLAMEVFDKV 338 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~--L~~-L~-~--~~~~Lvls--PtR~La~Q~~~~l 338 (809)
-.|+.+.++||||+|||+.+ |.. +. . +.++.++. +.|..+.++....
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y 402 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY 402 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh
Confidence 56889999999999999873 222 22 2 23444443 5676665554443
No 399
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=78.66 E-value=2.6 Score=43.54 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=25.5
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCS 325 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~~~~~Lvls 325 (809)
..|+.+++.|++|+|||..+++.+. .+.+++|+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3478899999999999998555432 456777773
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=78.48 E-value=3.7 Score=47.22 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=32.1
Q ss_pred CeEEEEcCCCChHHHHHH---HHHH--cCCcEEEEc--ccHhHHHHHHHHHH-hcCCc
Q 003587 295 KIIYHCGPTNSGKTYNAL---QRFM--EAKKGIYCS--PLRLLAMEVFDKVN-ALGVY 344 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L---~~L~--~~~~~Lvls--PtR~La~Q~~~~l~-~~g~~ 344 (809)
..++++|++|+|||+.+. ..+. .+.+++++. +.|..|.++.+.+. ..|++
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 478899999999999832 2232 344555554 78877776665553 33433
No 401
>PRK04841 transcriptional regulator MalT; Provisional
Probab=78.45 E-value=4 Score=51.37 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=25.4
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHHcCCcEEEEc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCS 325 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~~~~~~Lvls 325 (809)
...+.+++.||.|+|||+...+.+...+.+++++
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~ 63 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYS 63 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEe
Confidence 4567899999999999999777665444555553
No 402
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=78.43 E-value=3.6 Score=50.55 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=14.3
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+++.||+|+|||+.+
T Consensus 54 slLL~GPpGtGKTTLA 69 (725)
T PRK13341 54 SLILYGPPGVGKTTLA 69 (725)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999873
No 403
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=78.40 E-value=0.88 Score=53.19 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=20.2
Q ss_pred cccEEEEecccccccccchhHHHHHHhhccc
Q 003587 374 MYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404 (809)
Q Consensus 374 lv~~vVIDEAH~i~d~~~g~~~~~ill~l~~ 404 (809)
.+.+.||||+||++.. +|...|..+-.
T Consensus 119 ryKVyiIDEvHMLS~~----afNALLKTLEE 145 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ----AFNALLKTLEE 145 (515)
T ss_pred cceEEEEecHHhhhHH----HHHHHhccccc
Confidence 3899999999999853 66666655533
No 404
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=78.36 E-value=3.8 Score=45.35 Aligned_cols=49 Identities=29% Similarity=0.328 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.|+.+.+.||+|||||..+++.+. .++.++|+..--.+-.+ .+..+|..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd 106 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVD 106 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCC
Confidence 478999999999999998665543 46678888654444333 34555554
No 405
>PRK14530 adenylate kinase; Provisional
Probab=78.32 E-value=1.5 Score=45.26 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.4
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
|.+..++++||+|||||+.
T Consensus 1 ~~~~~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQ 19 (215)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566799999999999987
No 406
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=78.26 E-value=2.5 Score=42.94 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHH--HHHHHHcCCcE
Q 003587 297 IYHCGPTNSGKTYN--ALQRFMEAKKG 321 (809)
Q Consensus 297 viv~apTGSGKTl~--~L~~L~~~~~~ 321 (809)
+.+.||+|||||+. +|..++.++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~ 28 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKV 28 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCe
Confidence 56899999999988 55555533333
No 407
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=78.25 E-value=7 Score=43.40 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=14.1
Q ss_pred CeEEEEcCCCChHHHH
Q 003587 295 KIIYHCGPTNSGKTYN 310 (809)
Q Consensus 295 rdviv~apTGSGKTl~ 310 (809)
+.+++.||.|+|||..
T Consensus 37 ~~~Ll~G~~G~GKt~~ 52 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSI 52 (355)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999987
No 408
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=78.13 E-value=4.4 Score=43.68 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHH----HHHHcCCcEEEEcccHhH
Q 003587 297 IYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLL 330 (809)
Q Consensus 297 viv~apTGSGKTl~~L----~~L~~~~~~LvlsPtR~L 330 (809)
-++.|+.||+||.-++ .+....|+.| |+.-|-|
T Consensus 4 ~ihhG~pGSyKTsgAv~~~~iPA~ksGR~I-ITNVrGl 40 (398)
T COG4128 4 SIHHGIPGSYKTSGAVCNVIIPAFKSGRRI-ITNVRGL 40 (398)
T ss_pred EEEecCCCCcccchhHHhhhhhhhcCCcEE-EEecccc
Confidence 5789999999998643 2334455544 3444444
No 409
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=78.03 E-value=2.4 Score=46.63 Aligned_cols=20 Identities=50% Similarity=0.645 Sum_probs=16.5
Q ss_pred CCeEEEEcCCCChHHHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYNALQ 313 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~ 313 (809)
.+.++++||||||||..+..
T Consensus 4 ~~~i~i~GptgsGKt~la~~ 23 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIE 23 (307)
T ss_pred ceEEEEECCCCcCHHHHHHH
Confidence 45789999999999988543
No 410
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=78.01 E-value=1.4 Score=40.63 Aligned_cols=14 Identities=43% Similarity=0.292 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHH
Q 003587 297 IYHCGPTNSGKTYN 310 (809)
Q Consensus 297 viv~apTGSGKTl~ 310 (809)
|++.|++|||||+.
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 57899999999998
No 411
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=77.87 E-value=2.4 Score=50.84 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.3
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||..+
T Consensus 48 a~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 48 AFMLTGVRGVGKTTTA 63 (598)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999883
No 412
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=77.85 E-value=9.8 Score=38.26 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.4
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
..+++.||+|+|||..+
T Consensus 15 ~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA 31 (188)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999873
No 413
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=77.74 E-value=4.9 Score=44.51 Aligned_cols=49 Identities=31% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.|+.+.+.||+|||||+.+++.+. .++.++|+.+--.+-.+ .++.+|..
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd 106 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVD 106 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCC
Confidence 378999999999999998766553 46788998765554433 44555554
No 414
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.45 E-value=2.4 Score=48.37 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=14.1
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|..||.|+|||+++
T Consensus 40 a~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 40 GYIFSGLRGVGKTTAA 55 (397)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999984
No 415
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=77.37 E-value=2.4 Score=43.56 Aligned_cols=18 Identities=44% Similarity=0.320 Sum_probs=15.6
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.|..+.++||+|||||+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl 22 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTV 22 (207)
T ss_pred CeEEEEEECCCCCCHHHH
Confidence 466788999999999986
No 416
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=77.31 E-value=2.3 Score=52.18 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEcccHhHHHHHHHHHHhcCCcee-eeecccccccccCcceeeeee
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVYCS-LLTGQEKKLVPFSNHIACTVE 367 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L----~~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~-l~~g~~~~~~~~~~~i~~tie 367 (809)
.|..+++.||+|||||..+++.+ ..++.++|+..--.+... .++.+|+... ++..... ...+....++
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~---~A~~lGvDl~~llv~~~~----~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD---YAKKLGVDTDSLLVSQPD----TGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH---HHHHcCCChhHeEEecCC----CHHHHHHHHH
Confidence 37889999999999999865544 356788888865555533 5566666542 1100000 0001100111
Q ss_pred ecccCCcccEEEEecccccc
Q 003587 368 MVSTDEMYDVAVIDEIQMMS 387 (809)
Q Consensus 368 ~lt~~rlv~~vVIDEAH~i~ 387 (809)
.+-....+++||||-+-.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred HHhhcCCCeEEEEcchhhhc
Confidence 11111238999999988665
No 417
>PRK10865 protein disaggregation chaperone; Provisional
Probab=77.16 E-value=5.2 Score=50.26 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
..+++++||+|+|||..
T Consensus 199 ~~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAI 215 (857)
T ss_pred cCceEEECCCCCCHHHH
Confidence 34899999999999988
No 418
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.80 E-value=9.5 Score=47.18 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=15.2
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
..+++++||+|+|||..
T Consensus 207 ~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_pred CCCeEEECCCCCCHHHH
Confidence 45889999999999988
No 419
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=76.74 E-value=5.9 Score=49.18 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=16.2
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.|..++++||+|+|||..
T Consensus 348 ~g~~i~l~GppG~GKTtl 365 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSL 365 (784)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 567899999999999987
No 420
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=76.40 E-value=1.9 Score=42.96 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
|+.++++||+|||||..
T Consensus 1 g~ii~l~G~~GsGKsTl 17 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTL 17 (180)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56789999999999986
No 421
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=76.38 E-value=2.9 Score=39.63 Aligned_cols=17 Identities=47% Similarity=0.745 Sum_probs=14.3
Q ss_pred EEEEcCCCChHHHHHHH
Q 003587 297 IYHCGPTNSGKTYNALQ 313 (809)
Q Consensus 297 viv~apTGSGKTl~~L~ 313 (809)
++++||+|||||+.+-.
T Consensus 2 ii~~G~pgsGKSt~a~~ 18 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKR 18 (143)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999987433
No 422
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=76.31 E-value=5.1 Score=42.76 Aligned_cols=48 Identities=17% Similarity=0.029 Sum_probs=30.1
Q ss_pred hhCCCeEEEEcCCCChHHHHHHHHH----Hc-CCcEEEEcccHhHHHHHHHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYNALQRF----ME-AKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~L~~L----~~-~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
+..|..+++.|+||+|||..+++.+ .. +..++|++ +-.-..++..++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-~E~~~~~~~~r~~ 79 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-LEEPVVRTARRLL 79 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-cccCHHHHHHHHH
Confidence 3568899999999999998744322 23 45677775 2222344444443
No 423
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=76.30 E-value=13 Score=45.99 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=15.3
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
..+++++||+|+|||..
T Consensus 203 ~~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAI 219 (731)
T ss_pred CCceEEECCCCCCHHHH
Confidence 45899999999999987
No 424
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=76.23 E-value=2.1 Score=51.79 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=37.1
Q ss_pred CeEEEEcCCCChHHHH-HHHHHHc-CCcEEEEcccHhHHHHHHHHHHh-cCCceee
Q 003587 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNA-LGVYCSL 347 (809)
Q Consensus 295 rdviv~apTGSGKTl~-~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~-~g~~~~l 347 (809)
..++++||||||||.. .++.|+. ++.+||+=|--|+..-.....++ .|..+-+
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~ 231 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLR 231 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEE
Confidence 5799999999999998 4455554 45666666999998666555433 3555543
No 425
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=76.07 E-value=5 Score=39.73 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHH---HHHHc-CCcEEEEc--ccHhHHH
Q 003587 296 IIYHCGPTNSGKTYNAL---QRFME-AKKGIYCS--PLRLLAM 332 (809)
Q Consensus 296 dviv~apTGSGKTl~~L---~~L~~-~~~~Lvls--PtR~La~ 332 (809)
.+++.||+|+|||..+. ..+.. +.+++++. +.|.-+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~ 44 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAI 44 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHH
Confidence 46789999999999832 22333 34555554 5554333
No 426
>PRK09354 recA recombinase A; Provisional
Probab=75.67 E-value=4.8 Score=45.03 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=35.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEcccHhHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPtR~La~Q~~~~l~~~g~~ 344 (809)
.|+.+.+.||+|||||+.+++.+. .++.++|+..--.+-. ..+..+|+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvd 111 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVD 111 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCC
Confidence 378999999999999998666553 5678888875544443 345555655
No 427
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=75.56 E-value=6.4 Score=44.90 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.8
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
+-+++.||.|+|||..+
T Consensus 37 ha~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAA 53 (394)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46899999999999874
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=75.46 E-value=3.5 Score=42.28 Aligned_cols=17 Identities=41% Similarity=0.327 Sum_probs=14.7
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
+..+.++|++|||||+.
T Consensus 6 ~~iI~I~G~sGsGKTTl 22 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTV 22 (209)
T ss_pred CEEEEEECCCCCCHHHH
Confidence 44788899999999987
No 429
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=75.40 E-value=9.7 Score=46.19 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=56.0
Q ss_pred CEEEEe-chhHHHHHHHHHHH---hcCCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecccccc-ccccc-ccEEEE
Q 003587 459 DCVVAF-SRREIFEVKMAIEK---HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGM-GLNLN-IRRVVF 532 (809)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~---~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdal~~-GIDip-V~~VI~ 532 (809)
.++|+. ++.-+.+.+..+.+ ..|.++..+||+++..+|..+++... +|+.+|+|+|..+-. .+.+. +.+||.
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~--~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIA--SGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHh--CCCCCEEEecHHHHhccccccccceEEE
Confidence 445444 45555666655554 23789999999999999999999998 899999999975543 45564 888887
Q ss_pred cCCC
Q 003587 533 YSLS 536 (809)
Q Consensus 533 ~d~~ 536 (809)
-...
T Consensus 364 DEaH 367 (630)
T TIGR00643 364 DEQH 367 (630)
T ss_pred echh
Confidence 6553
No 430
>PRK00300 gmk guanylate kinase; Provisional
Probab=75.19 E-value=2.2 Score=43.54 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.9
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
..|+.++++||+|||||..
T Consensus 3 ~~g~~i~i~G~sGsGKstl 21 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTL 21 (205)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688999999999999986
No 431
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=75.12 E-value=3.3 Score=45.08 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=23.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHc-------CCcEEEEcccHhHH
Q 003587 296 IIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRLLA 331 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~~L~~-------~~~~LvlsPtR~La 331 (809)
..+|.||||||||-- |..|+. ...+++|+|..-.+
T Consensus 89 I~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 678899999999954 222332 23678888987544
No 432
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=75.07 E-value=4.3 Score=43.51 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.6
Q ss_pred hhCCCeEEEEcCCCChHHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~ 311 (809)
+..|+.+++.||+|+|||..+
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHH
Confidence 467889999999999999983
No 433
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=75.01 E-value=4.4 Score=49.95 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHH---HHc-C----CcEEEEcccHhHHHHHHHHHHhc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQR---FME-A----KKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~---L~~-~----~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
....++|+|..|||||.+.... ++. . .++|+++-|+..|.++.+++.++
T Consensus 16 ~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 16 TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 3457999999999999984433 332 2 36789999999999999999765
No 434
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.98 E-value=2.4 Score=45.10 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=16.1
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
-.+--+|++|+||||||+.
T Consensus 125 ~kRGLviiVGaTGSGKSTt 143 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTT 143 (375)
T ss_pred ccCceEEEECCCCCCchhh
Confidence 3455789999999999987
No 435
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=74.83 E-value=5.5 Score=48.47 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=38.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHc-CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 296 IIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 296 dviv~apTGSGKTl~~L~~L~~-~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
..++.|.||||||+.+...+.. +..+|||+|+..+|.|+++.|..+
T Consensus 34 ~~ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 34 HQTLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4568999999999985443332 567899999999999999999886
No 436
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=74.73 E-value=6.2 Score=47.55 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCChHHHHH----HHHHHcCCcEEEEcccH--hHHHHHHHHHHhcCCc
Q 003587 293 KRKIIYHCGPTNSGKTYNA----LQRFMEAKKGIYCSPLR--LLAMEVFDKVNALGVY 344 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~----L~~L~~~~~~LvlsPtR--~La~Q~~~~l~~~g~~ 344 (809)
....++++|+||+|||..+ .+.+..+..++++=|-. +|+..++..++..|..
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 3567899999999999872 33444455556665866 5777777777777663
No 437
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=74.67 E-value=1.5 Score=49.68 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=17.7
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
-.|+.++++||+|+|||+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 6899999999999999986
No 438
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=74.63 E-value=7.2 Score=48.97 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHH--HHHHHH-cCCcEEEEcc
Q 003587 296 IIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSP 326 (809)
Q Consensus 296 dviv~apTGSGKTl~--~L~~L~-~~~~~LvlsP 326 (809)
.++.+||||+|||.. +|...+ .+...++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 578999999999987 344333 3333444433
No 439
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=74.60 E-value=5 Score=47.95 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=26.0
Q ss_pred hhCCCeEEEEcCCCChHHHHH---HHHHH-cCCcEEEEcccHh
Q 003587 291 VMKRKIIYHCGPTNSGKTYNA---LQRFM-EAKKGIYCSPLRL 329 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~~---L~~L~-~~~~~LvlsPtR~ 329 (809)
-...+.++++|+||||||..+ |..+. .+.++||+=|.-+
T Consensus 173 ~~e~~h~li~G~tGsGKs~~i~~ll~~~~~~g~~~ii~D~~g~ 215 (566)
T TIGR02759 173 GSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCT 215 (566)
T ss_pred cccccceEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 456789999999999999763 22222 2445666657533
No 440
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=74.59 E-value=2.4 Score=43.99 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=20.9
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFM 316 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~ 316 (809)
+-.|..+.++||.|||||+- .+..|.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 46799999999999999986 444444
No 441
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=74.55 E-value=5.9 Score=39.72 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHH---HHc-----------CCcEEEEcccHhHHHHHHHHHHhc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQR---FME-----------AKKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~---L~~-----------~~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
.|.-+++.||+|+|||..+++. +.. ..+++|+..=-. ..++.+++...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~ 92 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRAL 92 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHH
Confidence 6888999999999999984332 222 346677753222 55666666654
No 442
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=74.55 E-value=7.1 Score=47.03 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=59.9
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCe-EEEEecccccccccc-cccEEEEcCCCCCCCCCcccCCHhHHHHHHcccCCCC
Q 003587 485 CVIYGALPPETRRQQANLFNDQDNEF-DVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562 (809)
Q Consensus 485 ~~lhg~l~~~~R~~~~~~F~~~~g~~-~ILVATdal~~GIDi-pV~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G 562 (809)
.-+.|..+..+|++.+++|+++.|-. -+|++|-+..-|||+ ...++|.+|. -.+...=.|-+-|+-|+|
T Consensus 765 ~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda---------~wnpchdaqavcRvyrYG 835 (1387)
T KOG1016|consen 765 LRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDA---------CWNPCHDAQAVCRVYRYG 835 (1387)
T ss_pred ecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEe---------ecCccccchhhhhhhhhc
Confidence 34568899999999999999744444 788999999999998 6656666665 334555567777888888
Q ss_pred CCCCceEEEEEecc
Q 003587 563 SIYPDGLTTTLNLD 576 (809)
Q Consensus 563 ~~~~~G~~i~~~~~ 576 (809)
.. ...++|.++.+
T Consensus 836 Q~-KpcfvYRlVmD 848 (1387)
T KOG1016|consen 836 QQ-KPCFVYRLVMD 848 (1387)
T ss_pred Cc-CceeEEeehhh
Confidence 72 34667777643
No 443
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.50 E-value=3.3 Score=49.72 Aligned_cols=16 Identities=31% Similarity=0.301 Sum_probs=14.3
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.+|..||.|+|||.++
T Consensus 40 a~Lf~GPpG~GKTtiA 55 (624)
T PRK14959 40 AYLFSGTRGVGKTTIA 55 (624)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999984
No 444
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.42 E-value=3.6 Score=49.71 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=14.1
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||..+
T Consensus 40 a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 40 AYLFTGPRGTGKTSSA 55 (620)
T ss_pred eEEEECCCCCChHHHH
Confidence 5789999999999883
No 445
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=74.39 E-value=3.9 Score=41.10 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=16.7
Q ss_pred CCCeEEEEcCCCChHHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~ 311 (809)
++|.++++||+|||||..+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~ 19 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLA 19 (183)
T ss_dssp SSSEEEEESSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999874
No 446
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=74.37 E-value=8.4 Score=52.58 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=50.7
Q ss_pred hhHHhhCC--CeEEEEcCCCChHHHHH---HHHH---H--cCCcEEEEcccHhHHHHHHHHHHhcCCceeeeeccccccc
Q 003587 287 PFARVMKR--KIIYHCGPTNSGKTYNA---LQRF---M--EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356 (809)
Q Consensus 287 p~~~~l~g--rdviv~apTGSGKTl~~---L~~L---~--~~~~~LvlsPtR~La~Q~~~~l~~~g~~~~l~~g~~~~~~ 356 (809)
++..++.+ +.+++.|+.|+|||+.. +.++ . .+..++.++||-.-|.++. ..|+.+.-+..-.....
T Consensus 1027 Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~g~~a~Ti~s~l~~~~ 1102 (1960)
T TIGR02760 1027 AIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SAGVQAQTLDSFLTDIS 1102 (1960)
T ss_pred HHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hcCCchHhHHHHhcCcc
Confidence 44445544 67888999999999884 1222 2 2446788899977776664 33554321111000000
Q ss_pred ccCcceeeeeeecccCCcccEEEEecccccccc
Q 003587 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389 (809)
Q Consensus 357 ~~~~~i~~tie~lt~~rlv~~vVIDEAH~i~d~ 389 (809)
.. ..... .. ..+++|||||=|+...
T Consensus 1103 ~~----~~~~~---~~-~~~v~ivDEasMv~~~ 1127 (1960)
T TIGR02760 1103 LY----RNSGG---DF-RNTLFILDESSMVSNF 1127 (1960)
T ss_pred cc----cccCC---CC-cccEEEEEccccccHH
Confidence 00 00000 11 1589999999999753
No 447
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=74.34 E-value=6.8 Score=47.38 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=37.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHhHHHHHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~~L~~~~~~LvlsPtR~La~Q~~~~l~ 339 (809)
...++.|--|+|||.+ ++.|.+.-.+||-..|+..|+.+...|+
T Consensus 60 ~~ylITGtAGaGKSts-Iq~L~~~ldCviTGaT~vAaQNls~~L~ 103 (818)
T PF02689_consen 60 SVYLITGTAGAGKSTS-IQTLAENLDCVITGATVVAAQNLSSKLS 103 (818)
T ss_pred EEEEEeccCCCCccch-HHHHHhhhCeEEecchhhhHhHHHHHhc
Confidence 4678899999999998 5666667778998999999999999987
No 448
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=74.10 E-value=3.6 Score=49.09 Aligned_cols=16 Identities=38% Similarity=0.519 Sum_probs=14.1
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|+.||.|+|||..+
T Consensus 40 ayLf~Gp~G~GKTt~A 55 (563)
T PRK06647 40 AYIFSGPRGVGKTSSA 55 (563)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999983
No 449
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=74.10 E-value=6 Score=45.96 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCChHHHHH--HHHHH
Q 003587 294 RKIIYHCGPTNSGKTYNA--LQRFM 316 (809)
Q Consensus 294 grdviv~apTGSGKTl~~--L~~L~ 316 (809)
=|-+++.||+|+|||+.+ +-.++
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkML 280 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKML 280 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHh
Confidence 356899999999999983 43444
No 450
>PRK08233 hypothetical protein; Provisional
Probab=74.07 E-value=3.8 Score=40.59 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
++..+.+.|++|||||+.
T Consensus 2 ~~~iI~I~G~~GsGKtTl 19 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTL 19 (182)
T ss_pred CceEEEEECCCCCCHHHH
Confidence 345778889999999987
No 451
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=73.75 E-value=3.7 Score=44.98 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHc----------CCcEEEEc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFME----------AKKGIYCS 325 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~~----------~~~~Lvls 325 (809)
.|..+.++||+|+|||..+++.+.. ++.++||.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3778999999999999986655432 34678775
No 452
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=73.22 E-value=6.6 Score=51.40 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=39.5
Q ss_pred hCCCeEEEEcCCCChHHHHHHHH----HHcC---CcEEEEcccHhHHHHHHHHHHhc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQR----FMEA---KKGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~----L~~~---~~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
-.+++++|.|.-|||||.+.... +..+ .+.++++=|+..|.++.+++.+.
T Consensus 12 ~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 12 TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 46889999999999999984433 3322 35799999999999998888763
No 453
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=73.20 E-value=4 Score=41.67 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=12.8
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
...+++.|+||||||..
T Consensus 38 ~~h~li~G~tgsGKS~~ 54 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTL 54 (205)
T ss_dssp S-SEEEE--TTSSHHHH
T ss_pred CceEEEEcCCCCCccHH
Confidence 44899999999999988
No 454
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=73.10 E-value=4.7 Score=52.27 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=40.6
Q ss_pred hCCCeEEEEcCCCChHHHH----HHHHHHcC-C----cEEEEcccHhHHHHHHHHHHhc
Q 003587 292 MKRKIIYHCGPTNSGKTYN----ALQRFMEA-K----KGIYCSPLRLLAMEVFDKVNAL 341 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~----~L~~L~~~-~----~~LvlsPtR~La~Q~~~~l~~~ 341 (809)
-.+.+++|.|-.|||||.+ ++..|+.+ | ..||++.|+.-|.++..++...
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 4577999999999999998 55555654 2 4689999999999998888753
No 455
>PLN02748 tRNA dimethylallyltransferase
Probab=72.78 E-value=4 Score=47.44 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=17.7
Q ss_pred hCCCeEEEEcCCCChHHHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQ 313 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~ 313 (809)
-.++.++++||||||||..++.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~ 41 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVD 41 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4566799999999999987543
No 456
>CHL00181 cbbX CbbX; Provisional
Probab=72.74 E-value=4.4 Score=44.15 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=20.3
Q ss_pred HhCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHH
Q 003587 275 ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 275 ~~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~ 310 (809)
...|+..|.+ +-.+++.||+|+|||+.
T Consensus 49 ~~~g~~~~~~---------~~~ill~G~pGtGKT~l 75 (287)
T CHL00181 49 KNLGLTSSNP---------GLHMSFTGSPGTGKTTV 75 (287)
T ss_pred HHcCCCCCCC---------CceEEEECCCCCCHHHH
Confidence 4566655433 45689999999999998
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=72.67 E-value=3.3 Score=39.75 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=12.5
Q ss_pred EEEEcCCCChHHHH
Q 003587 297 IYHCGPTNSGKTYN 310 (809)
Q Consensus 297 viv~apTGSGKTl~ 310 (809)
++++||||||||..
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999986
No 458
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=72.60 E-value=3.6 Score=47.80 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.5
Q ss_pred CeEEEEcCCCChHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 295 rdviv~apTGSGKTl~~ 311 (809)
+.+|+.||.|+|||..+
T Consensus 40 ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLA 56 (451)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35789999999999883
No 459
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=72.47 E-value=3.2 Score=43.51 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.0
Q ss_pred hhCCCeEEEEcCCCChHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~ 310 (809)
+-.|..+.++||+|||||+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTL 47 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTL 47 (226)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 46799999999999999986
No 460
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=72.36 E-value=2.8 Score=41.75 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.3
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.|+.++++|+.|||||+.
T Consensus 1 ~~~~i~l~G~~gsGKst~ 18 (175)
T cd00227 1 TGRIIILNGGSSAGKSSI 18 (175)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 377899999999999998
No 461
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=72.30 E-value=3.4 Score=48.82 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred hhCCCeEEEEcCCCChHHHH
Q 003587 291 VMKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~ 310 (809)
+-.|+.+.++||+|||||+.
T Consensus 358 i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 35789999999999999986
No 462
>PRK00131 aroK shikimate kinase; Reviewed
Probab=72.17 E-value=2.7 Score=41.17 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.1
Q ss_pred hCCCeEEEEcCCCChHHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~ 311 (809)
.++..++++|++|||||+.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla 21 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHH
Confidence 35678999999999999983
No 463
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=72.02 E-value=1.7 Score=44.24 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHH----cCCcEEEEccc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPL 327 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~----~~~~~LvlsPt 327 (809)
.|+-.+++||=+||||...|..+. .+.++++..|-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~ 41 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA 41 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc
Confidence 356788999999999998766554 34566776674
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=71.91 E-value=3.3 Score=41.23 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
|+.++++||+|||||+.
T Consensus 1 ~~~~~i~G~sGsGKttl 17 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTL 17 (179)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999998
No 465
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=71.85 E-value=8.8 Score=43.06 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.1
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+++.||+|.|||..+
T Consensus 47 a~L~~G~~G~GKttlA 62 (351)
T PRK09112 47 ALLFEGPEGIGKATLA 62 (351)
T ss_pred eEeeECCCCCCHHHHH
Confidence 5899999999999873
No 466
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=71.68 E-value=5.1 Score=41.53 Aligned_cols=33 Identities=39% Similarity=0.433 Sum_probs=24.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHH----HcCCcEEEEc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCS 325 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L----~~~~~~Lvls 325 (809)
.|..+++.||+|+|||..+++.+ ..+.+++|+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47899999999999998854443 3455677765
No 467
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=71.66 E-value=3.5 Score=53.95 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEeCCCC-----------HHHHHHHHHHhhcCCCCeEEEEeccccccccccc-ccEEEEc
Q 003587 466 RREIFEVKMAIEKHTNHHCCVIYGALP-----------PETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFY 533 (809)
Q Consensus 466 rk~~~~l~~~L~~~~g~~v~~lhg~l~-----------~~~R~~~~~~F~~~~g~~~ILVATdal~~GIDip-V~~VI~~ 533 (809)
+..+..+...+.......+..+.|.+. .-.+.+++..|. ...+++|++|.++..|+|+| +..|+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~--~~~ln~L~~~~~~~e~~d~~~~~~~~~~ 379 (1606)
T KOG0701|consen 302 RYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFH--FHELNLLIATSVLEEGVDVPKCNLVVLF 379 (1606)
T ss_pred chHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHh--hhhhhHHHHHHHHHhhcchhhhhhheec
Confidence 345555555555433334444444322 223567888998 78999999999999999998 9999999
Q ss_pred CCCCCCCCCcccCCHhHHHHHHcccCCCCC
Q 003587 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (809)
Q Consensus 534 d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (809)
+. |.....|+|..||+-+...
T Consensus 380 ~~---------~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 380 DA---------PTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred cC---------cchHHHHHHhhcccccchh
Confidence 98 8899999999999987664
No 468
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=71.63 E-value=19 Score=45.28 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCeEEEEcCCCChHHHH---HHHHHHc-------CCcEEEEcccHhH-------------HHHHHHHHHhcCCceeeee
Q 003587 293 KRKIIYHCGPTNSGKTYN---ALQRFME-------AKKGIYCSPLRLL-------------AMEVFDKVNALGVYCSLLT 349 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~---~L~~L~~-------~~~~LvlsPtR~L-------------a~Q~~~~l~~~g~~~~l~~ 349 (809)
...+++++||+|+|||.. ....+.. .+.-++..-.-+| ..++.+.+...+..
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~----- 267 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQ----- 267 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCC-----
Q ss_pred cccccccccCcceeeeeeecccCCcccEEEEecccccc----cccchhHHHHHHhhcccccccccCCchHHHHHHHHhhh
Q 003587 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMS----DACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425 (809)
Q Consensus 350 g~~~~~~~~~~~i~~tie~lt~~rlv~~vVIDEAH~i~----d~~~g~~~~~ill~l~~~~i~l~~s~~~~~li~~l~~~ 425 (809)
.+++|||+|.+. ..+-.....-..-.+....+.+.+..+..+.-..+...
T Consensus 268 --------------------------~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d 321 (852)
T TIGR03346 268 --------------------------IILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKD 321 (852)
T ss_pred --------------------------eEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcC
Q ss_pred cCCceEEeeccccchhhHhHHHHHHHHHhcCCCCEEEEechhHHHHHHH
Q 003587 426 TGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKM 474 (809)
Q Consensus 426 ~~~~~~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~fsrk~~~~l~~ 474 (809)
..-.--.+.+.-..|...+...++..+........=+-.+...+...+.
T Consensus 322 ~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 322 AALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT 370 (852)
T ss_pred HHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
No 469
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=71.61 E-value=10 Score=46.38 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCChHHHH---HHHHHHc-C--CcEEEEcccHhHHHHHHHHHH----hcCCceeeee---cccccccccCc
Q 003587 294 RKIIYHCGPTNSGKTYN---ALQRFME-A--KKGIYCSPLRLLAMEVFDKVN----ALGVYCSLLT---GQEKKLVPFSN 360 (809)
Q Consensus 294 grdviv~apTGSGKTl~---~L~~L~~-~--~~~LvlsPtR~La~Q~~~~l~----~~g~~~~l~~---g~~~~~~~~~~ 360 (809)
.+.+++.|.-|=|||.+ ++..+.. . ..++|.+|+.+-++.+.+-+. .+|..-.+.. |.... +. ..
T Consensus 231 ~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~-~~-~~ 308 (758)
T COG1444 231 KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGEIRE-VS-GD 308 (758)
T ss_pred CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccceee-ec-CC
Confidence 34788999999999988 3333332 2 366777899987777765543 3443322111 11111 10 00
Q ss_pred ceeeeeeecccCCc---ccEEEEecccccc
Q 003587 361 HIACTVEMVSTDEM---YDVAVIDEIQMMS 387 (809)
Q Consensus 361 ~i~~tie~lt~~rl---v~~vVIDEAH~i~ 387 (809)
.+ .+++..|... -+++|||||=.|.
T Consensus 309 ~~--~i~y~~P~~a~~~~DllvVDEAAaIp 336 (758)
T COG1444 309 GF--RIEYVPPDDAQEEADLLVVDEAAAIP 336 (758)
T ss_pred ce--eEEeeCcchhcccCCEEEEehhhcCC
Confidence 11 1344333321 6899999998875
No 470
>PRK08118 topology modulation protein; Reviewed
Probab=71.44 E-value=2.8 Score=41.70 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=13.7
Q ss_pred eEEEEcCCCChHHHH
Q 003587 296 IIYHCGPTNSGKTYN 310 (809)
Q Consensus 296 dviv~apTGSGKTl~ 310 (809)
.++++||.|||||+.
T Consensus 3 rI~I~G~~GsGKSTl 17 (167)
T PRK08118 3 KIILIGSGGSGKSTL 17 (167)
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999987
No 471
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=71.41 E-value=3.9 Score=44.49 Aligned_cols=18 Identities=44% Similarity=0.624 Sum_probs=14.9
Q ss_pred EEEEcCCCChHHHHHHHH
Q 003587 297 IYHCGPTNSGKTYNALQR 314 (809)
Q Consensus 297 viv~apTGSGKTl~~L~~ 314 (809)
++++||||||||..++.-
T Consensus 2 i~i~G~t~~GKs~la~~l 19 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQL 19 (287)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999885543
No 472
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=71.29 E-value=4.3 Score=44.47 Aligned_cols=19 Identities=53% Similarity=0.665 Sum_probs=15.7
Q ss_pred CeEEEEcCCCChHHHHHHH
Q 003587 295 KIIYHCGPTNSGKTYNALQ 313 (809)
Q Consensus 295 rdviv~apTGSGKTl~~L~ 313 (809)
+-++++|||+||||-.++.
T Consensus 4 ~~i~I~GPTAsGKT~lai~ 22 (308)
T COG0324 4 KLIVIAGPTASGKTALAIA 22 (308)
T ss_pred cEEEEECCCCcCHHHHHHH
Confidence 4688999999999977544
No 473
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=71.14 E-value=4.9 Score=43.68 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCChHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYNA 311 (809)
Q Consensus 294 grdviv~apTGSGKTl~~ 311 (809)
+..+++.||+|+|||+.+
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457899999999999874
No 474
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=70.93 E-value=3.5 Score=44.12 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=22.1
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHHcC
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFMEA 318 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~~~ 318 (809)
+-.|+.+.++||.|||||+- ++..++..
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p 54 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKP 54 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 35799999999999999987 55555543
No 475
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=70.89 E-value=4.7 Score=44.44 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHc----------CCcEEEEc
Q 003587 293 KRKIIYHCGPTNSGKTYNALQRFME----------AKKGIYCS 325 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L~~L~~----------~~~~Lvls 325 (809)
.|..+.++||+|+|||..+++.+.. ++.++|+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 4788999999999999986665542 23677775
No 476
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=70.66 E-value=6.1 Score=46.89 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=29.0
Q ss_pred hhhhHhhhhccCcHHHHHHHHHH--HhCCCCCCCccchhHHhhCCCeEEEEcCCCChHHHH
Q 003587 252 FPIFVEFCIEEFPDEIKRFRAMI--ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 252 lp~f~~~~~~~f~~~l~~i~~~l--~~~g~~~Pt~~~p~~~~l~grdviv~apTGSGKTl~ 310 (809)
.|.|.++. +..+.+.+|.+.+ ...|+.. .++.++++||+|+|||..
T Consensus 72 y~fF~d~y--Glee~ieriv~~l~~Aa~gl~~-----------~~~IL~LvGPpG~GKSsL 119 (644)
T PRK15455 72 YPAFEEFY--GMEEAIEQIVSYFRHAAQGLEE-----------KKQILYLLGPVGGGKSSL 119 (644)
T ss_pred ccchhccc--CcHHHHHHHHHHHHHHHHhcCC-----------CCceEEEecCCCCCchHH
Confidence 34444332 3345566666666 3344433 456899999999999976
No 477
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=70.54 E-value=16 Score=40.13 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=19.9
Q ss_pred EEEcCCCChHHHHH----HHHHHc-CC-cEEEEcccHhHHHHH
Q 003587 298 YHCGPTNSGKTYNA----LQRFME-AK-KGIYCSPLRLLAMEV 334 (809)
Q Consensus 298 iv~apTGSGKTl~~----L~~L~~-~~-~~LvlsPtR~La~Q~ 334 (809)
++.++.|+|||... +..+.. .+ ..++++|+..-+.++
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 43 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDI 43 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHH
Confidence 46799999999982 333333 32 455555666555553
No 478
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.46 E-value=7.5 Score=47.76 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCChHHHHH--HHH---HHcCC-cEEEEc--ccHhHHHHHHHHHH-hcCCce
Q 003587 293 KRKIIYHCGPTNSGKTYNA--LQR---FMEAK-KGIYCS--PLRLLAMEVFDKVN-ALGVYC 345 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~--L~~---L~~~~-~~Lvls--PtR~La~Q~~~~l~-~~g~~~ 345 (809)
.++.+.++||||+|||+++ |.. ...++ ++.+++ +.|.=+.++...+. .+|+++
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 4788999999999999882 221 12332 444443 55655555544444 345544
No 479
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=70.36 E-value=4.1 Score=48.16 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.8
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-.+++||.|+|||.++
T Consensus 38 ayLf~Gp~G~GKTt~A 53 (535)
T PRK08451 38 AYLFSGLRGSGKTSSA 53 (535)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4589999999999883
No 480
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=70.36 E-value=3.5 Score=51.67 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=14.7
Q ss_pred CeEEEEcCCCChHHHH
Q 003587 295 KIIYHCGPTNSGKTYN 310 (809)
Q Consensus 295 rdviv~apTGSGKTl~ 310 (809)
.+++++||.|+|||..
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4789999999999988
No 481
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=70.20 E-value=9.2 Score=42.50 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.9
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+++.||.|.|||..+
T Consensus 24 a~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 24 AYLLHGPAGIGKRALA 39 (328)
T ss_pred eeeeECCCCCCHHHHH
Confidence 5789999999999873
No 482
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=70.16 E-value=5.9 Score=49.29 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=16.0
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.+..++++||+|+|||..
T Consensus 346 ~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSL 363 (775)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 456799999999999987
No 483
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=69.78 E-value=6.3 Score=42.26 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=52.8
Q ss_pred hhCCCeEEEEcCCCChHHHH--HHHHHHcCC-cEEEEccc------Hh-HHHHHHHHHHhcCCceee-------eecccc
Q 003587 291 VMKRKIIYHCGPTNSGKTYN--ALQRFMEAK-KGIYCSPL------RL-LAMEVFDKVNALGVYCSL-------LTGQEK 353 (809)
Q Consensus 291 ~l~grdviv~apTGSGKTl~--~L~~L~~~~-~~LvlsPt------R~-La~Q~~~~l~~~g~~~~l-------~~g~~~ 353 (809)
+-+|..+-++|+.|||||+. .+..|.+.- ..|+.-.. ++ ....+.+-+...|..-.. +.|.+.
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999998 555555422 22333211 22 333455555555533211 112111
Q ss_pred cccccCcceeeeeeecccCCcccEEEEecccccccccchhHHHHHHh
Q 003587 354 KLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALL 400 (809)
Q Consensus 354 ~~~~~~~~i~~tie~lt~~rlv~~vVIDEAH~i~d~~~g~~~~~ill 400 (809)
..+..+.. ..+. -+++|.||.--++|..-..++...+.
T Consensus 116 QRi~IARA-----Lal~----P~liV~DEpvSaLDvSiqaqIlnLL~ 153 (268)
T COG4608 116 QRIGIARA-----LALN----PKLIVADEPVSALDVSVQAQILNLLK 153 (268)
T ss_pred hhHHHHHH-----HhhC----CcEEEecCchhhcchhHHHHHHHHHH
Confidence 11111100 1111 37899999999998543333333333
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=69.71 E-value=3.2 Score=41.88 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCChHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 294 grdviv~apTGSGKTl~ 310 (809)
|..++++||.|||||+.
T Consensus 2 g~~i~l~G~sGsGKsTl 18 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSL 18 (186)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56889999999999987
No 485
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=69.63 E-value=5.5 Score=44.43 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHH--HHHHHHcCCcEEEEccc
Q 003587 294 RKIIYHCGPTNSGKTYN--ALQRFMEAKKGIYCSPL 327 (809)
Q Consensus 294 grdviv~apTGSGKTl~--~L~~L~~~~~~LvlsPt 327 (809)
...+++.|++|+|||+. ++..+.....+++-+|.
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~ 60 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPF 60 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCC
Confidence 45689999999999988 56666654444444333
No 486
>PRK07261 topology modulation protein; Provisional
Probab=69.58 E-value=3.3 Score=41.36 Aligned_cols=16 Identities=38% Similarity=0.268 Sum_probs=14.0
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
.++++|++|||||+.+
T Consensus 2 ri~i~G~~GsGKSTla 17 (171)
T PRK07261 2 KIAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4789999999999873
No 487
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=69.34 E-value=18 Score=42.77 Aligned_cols=70 Identities=17% Similarity=0.365 Sum_probs=49.1
Q ss_pred EEEEe-chhHHHHHHHHHHH---hc-CCeEEEEeCCCCHHHHHHHHHHhhcCCCCeEEEEecc-----ccccc-cccc-c
Q 003587 460 CVVAF-SRREIFEVKMAIEK---HT-NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD-----AVGMG-LNLN-I 527 (809)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~---~~-g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATd-----al~~G-IDip-V 527 (809)
++|+. ||.-+.+++..+.. .. +++++.++||++...+. +.++ .| .+|||||+ .+.+| +++. |
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~--~~-~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALK--RG-VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHh--cC-CCEEEECccHHHHHHHcCCcchhhc
Confidence 45544 77666666665544 44 67899999999987554 6665 45 89999995 67777 7775 8
Q ss_pred cEEEEcCC
Q 003587 528 RRVVFYSL 535 (809)
Q Consensus 528 ~~VI~~d~ 535 (809)
+++|.-..
T Consensus 176 ~~lVlDEA 183 (513)
T COG0513 176 ETLVLDEA 183 (513)
T ss_pred CEEEeccH
Confidence 88876543
No 488
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=69.04 E-value=11 Score=39.70 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYNALQRF 315 (809)
Q Consensus 294 grdviv~apTGSGKTl~~L~~L 315 (809)
|...+++||.|+|||..+++..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 3457899999999999855443
No 489
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=68.79 E-value=4.5 Score=44.54 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHH----HHHHHHcCCcEEEEc---ccHhHHHHHHHHHH
Q 003587 294 RKIIYHCGPTNSGKTYN----ALQRFMEAKKGIYCS---PLRLLAMEVFDKVN 339 (809)
Q Consensus 294 grdviv~apTGSGKTl~----~L~~L~~~~~~Lvls---PtR~La~Q~~~~l~ 339 (809)
|.-.+..||||||||+- .|.-..++-.+|+.+ |-.-||.-+.....
T Consensus 273 GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qya 325 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYA 325 (514)
T ss_pred CceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHc
Confidence 45789999999999975 344445566777765 66666665544443
No 490
>PRK13695 putative NTPase; Provisional
Probab=68.72 E-value=31 Score=34.19 Aligned_cols=15 Identities=40% Similarity=0.364 Sum_probs=13.4
Q ss_pred eEEEEcCCCChHHHH
Q 003587 296 IIYHCGPTNSGKTYN 310 (809)
Q Consensus 296 dviv~apTGSGKTl~ 310 (809)
.++++|+.|+|||+.
T Consensus 2 ~i~ltG~~G~GKTTl 16 (174)
T PRK13695 2 KIGITGPPGVGKTTL 16 (174)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999997
No 491
>PF09382 RQC: RQC domain; InterPro: IPR018982 This entry represents the RQC domain, which is a DNA-binding domain found only in RecQ family enzymes. RecQ family helicases can unwind G4 DNA, and play important roles at G-rich domains of the genome, including the telomeres, rDNA, and immunoglobulin switch regions. This domain has a helix-turn-helix structure and acts as a high affinity G4 DNA binding domain []. Binding of RecQ to Holliday junctions involves both the RQC and the HRDC domains.; GO: 0043140 ATP-dependent 3'-5' DNA helicase activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1OYW_A 1OYY_A 3AAF_A 2AXL_A 2V1X_B 2WWY_B.
Probab=68.70 E-value=1.7 Score=39.65 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhhccCCceEEeecCCCCCCCCchhhHHHHHhhhhhhhHhHHhhc
Q 003587 672 PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSH 726 (809)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~v~il~g~~~~~~~~~~~l~~le~~h~~l~~y~wls~ 726 (809)
..+++|+.++.++++.++.+++++|... +++. +..|+.++.||-++.
T Consensus 7 ~~il~~V~~~~~~~~~~~ivdvlrGs~~------~~i~--~~~~~~l~~yG~gk~ 53 (106)
T PF09382_consen 7 KKILSCVQRLKQRFGLSQIVDVLRGSKS------KKIR--EKGHDQLPTYGIGKD 53 (106)
T ss_dssp HHHHHHHHHTTT-S-HHHHHHHHTT-S-------CCCH--HTTGGGSTTTTTTTT
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhccc------hhhh--hcCCCcCcccCCccc
Confidence 5688999999999999999999999943 3433 778999999999873
No 492
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=68.35 E-value=6.3 Score=39.69 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=16.3
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.|+.+++.|+.|||||+.
T Consensus 2 ~g~~IvieG~~GsGKsT~ 19 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQ 19 (195)
T ss_pred CceEEEEECCCCCCHHHH
Confidence 477899999999999987
No 493
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.35 E-value=10 Score=46.80 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.7
Q ss_pred CCCeEEEEcCCCChHHHH
Q 003587 293 KRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~ 310 (809)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 356799999999999987
No 494
>PHA02533 17 large terminase protein; Provisional
Probab=68.30 E-value=17 Score=43.14 Aligned_cols=48 Identities=19% Similarity=0.059 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCChHHHHHH-HH----HH-cCCcEEEEcccHhHHHHHHHHHHh
Q 003587 293 KRKIIYHCGPTNSGKTYNAL-QR----FM-EAKKGIYCSPLRLLAMEVFDKVNA 340 (809)
Q Consensus 293 ~grdviv~apTGSGKTl~~L-~~----L~-~~~~~LvlsPtR~La~Q~~~~l~~ 340 (809)
.+|-.++..+=..|||..+. .. +. .+..+++++|++.-|..+++.++.
T Consensus 73 ~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 73 KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 35666788888999998822 12 22 344778889999999999988875
No 495
>PF05729 NACHT: NACHT domain
Probab=68.29 E-value=6.6 Score=37.77 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.3
Q ss_pred CeEEEEcCCCChHHHH
Q 003587 295 KIIYHCGPTNSGKTYN 310 (809)
Q Consensus 295 rdviv~apTGSGKTl~ 310 (809)
|.+++.|+.|+|||..
T Consensus 1 r~l~I~G~~G~GKStl 16 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTL 16 (166)
T ss_pred CEEEEECCCCCChHHH
Confidence 4688999999999987
No 496
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=68.20 E-value=7.9 Score=47.84 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=13.5
Q ss_pred eEEEEcCCCChHHHH
Q 003587 296 IIYHCGPTNSGKTYN 310 (809)
Q Consensus 296 dviv~apTGSGKTl~ 310 (809)
.++.+||||+|||..
T Consensus 486 ~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 486 SFLFTGPTGVGKTEL 500 (731)
T ss_pred eEEEECCCCccHHHH
Confidence 478999999999987
No 497
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=68.03 E-value=6.3 Score=41.01 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=24.9
Q ss_pred hCCCeEEEEcCCCChHHHHHHHHHH----c------CCcEEEEc
Q 003587 292 MKRKIIYHCGPTNSGKTYNALQRFM----E------AKKGIYCS 325 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~~L~~L~----~------~~~~Lvls 325 (809)
-.|..+.++||+|+|||..+++.+. . +..++|+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3578899999999999998655432 2 25677775
No 498
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.01 E-value=4.9 Score=48.52 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=14.1
Q ss_pred eEEEEcCCCChHHHHH
Q 003587 296 IIYHCGPTNSGKTYNA 311 (809)
Q Consensus 296 dviv~apTGSGKTl~~ 311 (809)
-+|.+||.|+|||.++
T Consensus 41 ayLf~Gp~G~GKtt~A 56 (614)
T PRK14971 41 AYLFCGPRGVGKTTCA 56 (614)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999973
No 499
>PRK05541 adenylylsulfate kinase; Provisional
Probab=67.87 E-value=7.5 Score=38.60 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.6
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
-++..++++|+.|||||+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~ 23 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTI 23 (176)
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 3567899999999999988
No 500
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=67.81 E-value=4.9 Score=40.38 Aligned_cols=19 Identities=26% Similarity=0.273 Sum_probs=17.2
Q ss_pred hCCCeEEEEcCCCChHHHH
Q 003587 292 MKRKIIYHCGPTNSGKTYN 310 (809)
Q Consensus 292 l~grdviv~apTGSGKTl~ 310 (809)
|.|+.++++|++|||||+.
T Consensus 1 ~~ge~i~l~G~sGsGKSTl 19 (176)
T PRK09825 1 MAGESYILMGVSGSGKSLI 19 (176)
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4688899999999999987
Done!