Query 003587
Match_columns 809
No_of_seqs 612 out of 4300
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 17:33:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003587.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1638-1641//hhsearch_pdb/003587hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rc3_A ATP-dependent RNA helic 1.0 1 1 627.3 39.9 583 179-769 42-640 (677)
2 1oyw_A RECQ helicase, ATP-depe 1.0 1 1 391.7 27.5 403 271-725 14-462 (523)
3 2v1x_A ATP-dependent DNA helic 1.0 1 1 375.3 30.4 385 270-699 32-477 (591)
4 2db3_A ATP-dependent RNA helic 1.0 1 1 341.3 26.1 291 270-577 67-407 (434)
5 3l9o_A ATP-dependent RNA helic 1.0 1 1 325.3 19.6 310 277-591 180-613 (1108)
6 3sqw_A ATP-dependent RNA helic 1.0 1 1 321.9 26.0 302 270-585 32-406 (579)
7 3i5x_A ATP-dependent RNA helic 1.0 1 1 321.0 25.5 302 270-585 83-457 (563)
8 3fmp_B ATP-dependent RNA helic 1.0 1 1 314.5 11.8 314 261-586 97-456 (479)
9 4a4z_A Antiviral helicase SKI2 1.0 1 1 313.6 22.8 298 287-588 47-506 (997)
10 2i4i_A ATP-dependent RNA helic 1.0 1 1 313.3 22.3 297 270-582 26-388 (417)
No 1
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=1.00 E-value=1 Score=627.30 Aligned_cols=583 Identities=41% Similarity=0.716 Sum_probs=503.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHH--HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 27712599999999885313355645556412889888926779998521099723--4567632999045543334667
Q 003587 179 KINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDV--AQYLVWLGPSDDAVKFLFPIFV 256 (809)
Q Consensus 179 ~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~i~~~~~p~~~~~f~~~~~~~~~~~~--~~~i~~~~~~~~~~~~llp~f~ 256 (809)
++++. .+..+++.|+++|+++.++.+.+++...+++.+.+|+.++++..+.+. ...+..+.........++|+|.
T Consensus 42 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~ 118 (677)
T 3rc3_A 42 PLDKN---EVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFL 118 (677)
T ss_dssp CCCHH---HHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTTSSCGGGGHHHHH
T ss_pred ECCHH---HHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 06468---999999998506888887876486547889989999998532578993034578887504676211352578
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 54201490799999999996799998750003776099709998579972799999999719919999464767999999
Q 003587 257 EFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 336 (809)
Q Consensus 257 ~~~~~~f~~~l~~i~~~l~~~g~~~Pt~~~p~~~il~grdviv~apTGSGKTl~~L~~L~~~~~~IvlsPtR~LA~Qi~~ 336 (809)
.+....||. +....+.....++..|++|+|.++.++|++++++||||||||+.+++.+...+.++|++|||+||.|+++
T Consensus 119 ~~~~~~fp~-~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~ 197 (677)
T 3rc3_A 119 RHAKQIFPV-LDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 197 (677)
T ss_dssp HHHHHHCGG-GGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHH
T ss_pred HHHHHHCCC-CCCHHHHHHHHHCCCHHHHCHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHH
T ss_conf 988853888-6779999877601680643777785399879998699977989999999965995999179999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCC----CCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 998429720332062102324----5761466344315687621899806521111332247899984036221001488
Q 003587 337 KVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGD 412 (809)
Q Consensus 337 ~l~~~g~~~~l~~G~~~~~~~----~~~~i~~tie~lt~~rli~~iVIDEah~i~d~~~g~~~~~il~~l~~~~i~l~~s 412 (809)
++++.|..+++++|....... ...++.+|++++.....++++||||||++.+.+||++++.++.++++..+++++.
T Consensus 198 ~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~ 277 (677)
T 3rc3_A 198 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGE 277 (677)
T ss_dssp HHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEEC
T ss_pred HHHHCCCCEEEEECCEEEEECCCCCCCCEEEECHHHHHHCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99963991899989866870588865205681386742215688999816665378531689999997068222399842
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 12799999974203996078530102612676999999987038998899911167999999999713970899808999
Q 003587 413 PSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALP 492 (809)
Q Consensus 413 ~~~~~li~~l~~~~~~~~~~~~~~r~~~l~~~~k~ll~~l~~~~~g~~II~fsr~~~~~l~~~L~~~~g~~v~~ihg~l~ 492 (809)
++..+.+..+....+....+..+.+..++...... +..+....+|++|+|+++++++.++..|.+. ++.+.++||+|+
T Consensus 278 SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~-l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~-g~~v~~lHG~L~ 355 (677)
T 3rc3_A 278 PAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGSLP 355 (677)
T ss_dssp GGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSC-CCSGGGCCTTEEEECSSHHHHHHHHHHHHHT-TCCCEEECTTSC
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 30399999999755986599974203247888888-9999845899789984799999999999855-887164100489
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCC----C-CCCCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999986268998489993543235345540099984987778----9-976668986899887345889999996
Q 003587 493 PETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----G-DKIIPVPGSQVKQIAGRAGRRGSIYPD 567 (809)
Q Consensus 493 ~e~R~~~~~~F~~~~g~~~ILVATdvl~~GIDipV~~VI~~d~~K~d----g-~~~~P~s~~~y~Qr~GRAGR~G~~~~~ 567 (809)
+++|..+++.|+.++|.++|||||+++++|||++|++||++++.||+ | .+..|.+.++|+||+|||||.|.....
T Consensus 356 ~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~ 435 (677)
T 3rc3_A 356 PGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE 435 (677)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSS
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999998704897389996768777707675489987764123356776342308999999996187889899998
Q ss_pred EEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 28999825669999999739925878704788189999998108664188899998631136786445793069999999
Q 003587 568 GLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANM 647 (809)
Q Consensus 568 G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~il~~f~e~~~~~~~~~~c~~~~~~~ia~~ 647 (809)
|.|+.++..+...+.+.+....+++...++.|...+++.+....+...+.++++.|.+....+..|++|+.++...++++
T Consensus 436 G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~l~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la~~ 515 (677)
T 3rc3_A 436 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAEL 515 (677)
T ss_dssp EEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHHHH
T ss_pred EEEEEEECCHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 79999745028999999725850346536787199999984138831599999999986234625301466879999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98810899100001148998876258999999998441588057731-----2789989886246999983220333768
Q 003587 648 LEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSMYL 722 (809)
Q Consensus 648 L~~~~~l~l~d~~~~c~~P~~~~~~~~~~~~~~~~~~~~~~~~v~~l-----~~~~~~~~~~~~~l~~lE~~h~~l~~Y~ 722 (809)
++++ +|++.+++.||.+|++.+++..+.++..|++.|+.+.++++. .++|...+++..+|..||..|+++++|+
T Consensus 516 l~~~-~L~~~~~~~f~~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~y~ 594 (677)
T 3rc3_A 516 IQHI-PLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYL 594 (677)
T ss_dssp TTTS-CCCHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSSCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8508-999787754586898989889999999999999748987878875134777788878899999999999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 73201797878877899999999999999998506886445640698
Q 003587 723 WLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQAGKP 769 (809)
Q Consensus 723 wLs~rf~~~~f~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 769 (809)
||||||| ++|||.+.|++++..++++|++.|.+....-+.++.++.
T Consensus 595 wls~r~~-~~f~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 640 (677)
T 3rc3_A 595 WLSYRFM-DMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKL 640 (677)
T ss_dssp HHHTTCT-TTSTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSC
T ss_pred HHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9986465-658999999999999999999999999999863245444
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=1.00 E-value=1 Score=391.74 Aligned_cols=403 Identities=17% Similarity=0.193 Sum_probs=291.0
Q ss_pred HHHHHH-CCCCCCCC--CCHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 999996-79999875--000377609970999857997279999-99997199199994647679999999984297203
Q 003587 271 RAMIES-ADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNA-LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCS 346 (809)
Q Consensus 271 ~~~l~~-~g~~~Pt~--~~p~~~il~grdviv~apTGSGKTl~~-L~~L~~~~~~IvlsPtR~LA~Qi~~~l~~~g~~~~ 346 (809)
.+.++. .||..|++ ...+..+++|+|+++++|||||||+++ ++.+...+.+||++|+++|+.|+++.+..+|..+.
T Consensus 14 ~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~ 93 (523)
T 1oyw_A 14 KQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAA 93 (523)
T ss_dssp HHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999972999999999999999982999999999996799999999998189799989869999999999997699589
Q ss_pred EEECCCCCCC----------CCCCCEEEEEEECCCC--------CCCCEEEEECCCCCCCCCCHHHHHHHHHHC------
Q ss_conf 3206210232----------4576146634431568--------762189980652111133224789998403------
Q 003587 347 LLTGQEKKLV----------PFSNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGL------ 402 (809)
Q Consensus 347 l~~G~~~~~~----------~~~~~i~~tie~lt~~--------rli~~iVIDEah~i~d~~~g~~~~~il~~l------ 402 (809)
.+++...... .....+++|++.+... ..++++||||||++++ ||++++..+..+
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~--~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 94 CLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ--WGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT--TSSCCCHHHHGGGGHHHH
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHHCHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCHHHHHHHHHHHHH
T ss_conf 994889989999999997569988899897997175799987318978899838626676--788647999999999986
Q ss_pred -CC-CCCCCCCCCHHH--HHHHHHHHHCCCCEEEEECCCCCH------HHHHHHHHHHHHHHCCCCCEEEEE-CHHHHHH
Q ss_conf -62-210014881279--999997420399607853010261------267699999998703899889991-1167999
Q 003587 403 -MA-DEIHLCGDPSVL--DVVRKICSETGDELHEQHYERFKP------LVVEAKTLLGDLRNVRSGDCVVAF-SRREIFE 471 (809)
Q Consensus 403 -~~-~~i~l~~s~~~~--~li~~l~~~~~~~~~~~~~~r~~~------l~~~~k~ll~~l~~~~~g~~II~f-sr~~~~~ 471 (809)
+. ..+.++++++.. ..+...............+.+.+. .......++..+.....+..|||+ +++.++.
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~ 251 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED 251 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 78987899967899789999999838999749968999995589998578789999999996689948999497899999
Q ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEECCCCCCCCCCCCCCCHHH
Q ss_conf 9999997139708998089999999999998626899848999354323534554-009998498777899766689868
Q 003587 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQ 550 (809)
Q Consensus 472 l~~~L~~~~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATdvl~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~ 550 (809)
++..|.+. ++.+..+||++++++|..+++.|+ +|+.+|||||++++||||+| |++|||+++ |.++++
T Consensus 252 l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~--~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~---------p~s~~~ 319 (523)
T 1oyw_A 252 TAARLQSK-GISAAAYHAGLENNVRADVQEKFQ--RDDLQIVVATVAFGMGINKPNVRFVVHFDI---------PRNIES 319 (523)
T ss_dssp HHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHH--TTSCSEEEECTTSCTTTCCTTCCEEEESSC---------CSSHHH
T ss_pred HHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHH--CCCCEEEEEECHHHCCCCCCCCCEEEEECC---------CCCHHH
T ss_conf 99999877-997898617799999999999997--499749999525417987667548999799---------999999
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEEECCCHHH-HHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 998873458899999962899982566999-9999739925878704788189999998108664188899998631136
Q 003587 551 VKQIAGRAGRRGSIYPDGLTTTLNLDDLDY-LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRL 629 (809)
Q Consensus 551 y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~-l~~~l~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~il~~f~e~~~~ 629 (809)
|+||+|||||.|. .|.|++|+++++.. +..++..+.++..+......++.|..||.. ..|++..++.||++...
T Consensus 320 y~Qr~GRaGR~g~---~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~~~-~~crr~~l~~~f~e~~~- 394 (523)
T 1oyw_A 320 YYQETGRAGRDGL---PAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGRQ- 394 (523)
T ss_dssp HHHHHTTSCTTSS---CEEEEEEECHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHTC-SSCHHHHHHHHTTCCCC-
T ss_pred HHHHHCCCCCCCC---CCEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCCCC-
T ss_conf 9999661667999---725999717889999999985668499999999999999999843-54686614865599888-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf 786445793069999999988108991000011489988762-----589999999984415880577312789989886
Q 003587 630 DGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKN 704 (809)
Q Consensus 630 ~~~~~~c~~~~~~~ia~~L~~~~~l~l~d~~~~c~~P~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 704 (809)
..|. .|++|..|....| +++++++.+.+++|+.+..+++++|..
T Consensus 395 ----~~c~---------------------~cd~c~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~------ 443 (523)
T 1oyw_A 395 ----EPCG---------------------NCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGAN------ 443 (523)
T ss_dssp ----SCCS---------------------CBHHHHSCCCEEECHHHHHHHHHHHHHTTTCCCHHHHHHHHHTCC------
T ss_pred ----CCCC---------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC------
T ss_conf ----8999---------------------998889986441643999999999998645867114278764898------
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 246999983220333768732
Q 003587 705 DAELLDLETKHQVLSMYLWLS 725 (809)
Q Consensus 705 ~~~l~~lE~~h~~l~~Y~wLs 725 (809)
.+.+. +..|+.+++|+.++
T Consensus 444 ~~~~~--~~~~~~~~~~~~~~ 462 (523)
T 1oyw_A 444 NQRIR--DYGHDKLKVYGMGR 462 (523)
T ss_dssp CHHHH--HHTGGGSTTTTTTT
T ss_pred CHHHH--HHCCCCCCCCCCCC
T ss_conf 57678--61424366556557
No 3
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=1.00 E-value=1 Score=375.30 Aligned_cols=385 Identities=17% Similarity=0.179 Sum_probs=272.7
Q ss_pred HHHHHHH-CCCCCCCC--CCHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCE
Q ss_conf 9999996-79999875--000377609970999857997279999-9999719919999464767999999998429720
Q 003587 270 FRAMIES-ADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNA-LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (809)
Q Consensus 270 i~~~l~~-~g~~~Pt~--~~p~~~il~grdviv~apTGSGKTl~~-L~~L~~~~~~IvlsPtR~LA~Qi~~~l~~~g~~~ 345 (809)
+.++++. .||..|++ ...+..+++|+|+++++|||+|||+++ ++++...+.+||++|+++|+.|+++.+.++|+.+
T Consensus 32 l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~gi~~ 111 (591)
T 2v1x_A 32 VKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISA 111 (591)
T ss_dssp HHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCE
T ss_conf 99999997398999999999999998499989997998709999999999769929999687999999999999669958
Q ss_pred EEEECCCCCC------------CCCCCCEEEEEEECCCC-------------CCCCEEEEECCCCCCCCC--CHHHHHH-
Q ss_conf 3320621023------------24576146634431568-------------762189980652111133--2247899-
Q 003587 346 SLLTGQEKKL------------VPFSNHIACTVEMVSTD-------------EMYDVAVIDEIQMMSDAC--RGYAWTR- 397 (809)
Q Consensus 346 ~l~~G~~~~~------------~~~~~~i~~tie~lt~~-------------rli~~iVIDEah~i~d~~--~g~~~~~- 397 (809)
..++|..... ......+++|++.+... ..++++||||||+++++| |.+.+..
T Consensus 112 ~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l 191 (591)
T 2v1x_A 112 TMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKAL 191 (591)
T ss_dssp EECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGG
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 99968999999999999865126888789988467544199999998444206876899988422442465418999999
Q ss_pred -HHHHCCCCC--CCCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCC--------H--HHHHHHHHHHHHHHCCCC-CEE
Q ss_conf -984036221--00148812--7999999742039960785301026--------1--267699999998703899-889
Q 003587 398 -ALLGLMADE--IHLCGDPS--VLDVVRKICSETGDELHEQHYERFK--------P--LVVEAKTLLGDLRNVRSG-DCV 461 (809)
Q Consensus 398 -il~~l~~~~--i~l~~s~~--~~~li~~l~~~~~~~~~~~~~~r~~--------~--l~~~~k~ll~~l~~~~~g-~~I 461 (809)
.+....+.. +.++++++ ....+...........+...+.+.+ + .......+...+.....+ ..|
T Consensus 192 ~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~I 271 (591)
T 2v1x_A 192 GILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGI 271 (591)
T ss_dssp GHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEE
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99998589986899945798899999999838998689846777766579999678757999999999999744588769
Q ss_pred EEE-CHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEECCCCCCC
Q ss_conf 991-11679999999997139708998089999999999998626899848999354323534554-0099984987778
Q 003587 462 VAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (809)
Q Consensus 462 I~f-sr~~~~~l~~~L~~~~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATdvl~~GIDip-V~~VI~~d~~K~d 539 (809)
||+ +++.++.++..|.+. |+.+..+||+|++++|..+++.|+ +|+.+|||||++++||||+| |++|||+++
T Consensus 272 Vf~~sr~~~e~la~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~--~g~~~VlVAT~a~~~GID~p~V~~VI~~~~---- 344 (591)
T 2v1x_A 272 IYCFSQKDSEQVTVSLQNL-GIHAGAYHANLEPEDKTTVHRKWS--ANEIQVVVATVAFGMGIDKPDVRFVIHHSM---- 344 (591)
T ss_dssp EECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHH--TTSSSEEEECTTSCTTCCCSCEEEEEESSC----
T ss_pred EEECCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHH--CCCCEEEEEECHHHCCCCCCCCCEEEEECC----
T ss_conf 9967689999999999977-997898469879999999999997--699839998453306877436658999699----
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHH-HHHCCCCHHHHHHCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 9976668986899887345889999996289998256699999-997399258787047881899999981086641888
Q 003587 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQ 618 (809)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~-~~l~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~ 618 (809)
|.++++|+||+|||||+|. .|.|++|+++.+.... .++...... ...+..|..||.....|++..
T Consensus 345 -----p~s~~~y~Qr~GRaGR~G~---~g~~i~l~~~~D~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~Crr~~ 410 (591)
T 2v1x_A 345 -----SKSMENYYQESGRAGRDDM---KADCILYYGFGDIFRISSMVVMENVG------QQKLYEMVSYCQNISKCRRVL 410 (591)
T ss_dssp -----CSSHHHHHHHHTTSCTTSS---CEEEEEEECHHHHHHHHHHTTTSTTH------HHHHHHHHHHHTCSSSCHHHH
T ss_pred -----CCCHHHHHHHHCCCCCCCC---CCEEEEEECHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHCCCCCHHHH
T ss_conf -----9999999898540776999---86599997768889999998534665------899999999875556528999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCC-----HHHHHHHHH---HHHHCCCC
Q ss_conf 99998631136786445793069999999988108991000011489988--762-----589999999---98441588
Q 003587 619 LLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN--IRD-----PKAMYHLLR---FASSYSKN 688 (809)
Q Consensus 619 il~~f~e~~~~~~~~~~c~~~~~~~ia~~L~~~~~l~l~d~~~~c~~P~~--~~~-----~~~~~~~~~---~~~~~~~~ 688 (809)
++.||++..... .|+ ..|++|..|.+ ..| +++++++.+ ..++|+.+
T Consensus 411 ll~~f~e~~~~~----~c~--------------------~~Cd~C~~~~~~~~~d~~~~~~~~l~~v~~~~~~~~~~~~~ 466 (591)
T 2v1x_A 411 MAQHFDEVWNSE----ACN--------------------KMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKLTPL 466 (591)
T ss_dssp HHHHHTCCC-------CCC--------------------SCBHHHHCCCCEEEEECHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHCCCCCCCC----CCC--------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 999809988866----547--------------------89989999986543566899999999999987417864589
Q ss_pred CEEEEECCCCC
Q ss_conf 05773127899
Q 003587 689 APVSIAMGMPK 699 (809)
Q Consensus 689 ~~v~~l~~~~~ 699 (809)
..+++++|...
T Consensus 467 ~~~~~~~g~~~ 477 (591)
T 2v1x_A 467 KLIDSWMGKGA 477 (591)
T ss_dssp HHHHHHTTCSC
T ss_pred HHHHHHHCCCC
T ss_conf 99999928872
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=341.35 Aligned_cols=291 Identities=18% Similarity=0.220 Sum_probs=219.5
Q ss_pred HHHHHHHCCCCCCCC--CCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC------------CCCEEEECCCHHHHHHHH
Q ss_conf 999999679999875--000377609970999857997279999999971------------991999946476799999
Q 003587 270 FRAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME------------AKKGIYCSPLRLLAMEVF 335 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~--~~p~~~il~grdviv~apTGSGKTl~~L~~L~~------------~~~~IvlsPtR~LA~Qi~ 335 (809)
+++++...||..|++ ...++.+++|+|++++||||||||++++.+++. ++.+||++|||+||.|++
T Consensus 67 l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~ 146 (434)
T 2db3_A 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIF 146 (434)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 99999976999999899999999966998899878999823999999999998445321358964899934899999999
Q ss_pred HHHHHCCCC----EEEEECCCCCC-C-----CCCCCEEEEEEECC----C----CCCCCEEEEECCCCCCCCCCHHHHHH
Q ss_conf 999842972----03320621023-2-----45761466344315----6----87621899806521111332247899
Q 003587 336 DKVNALGVY----CSLLTGQEKKL-V-----PFSNHIACTVEMVS----T----DEMYDVAVIDEIQMMSDACRGYAWTR 397 (809)
Q Consensus 336 ~~l~~~g~~----~~l~~G~~~~~-~-----~~~~~i~~tie~lt----~----~rli~~iVIDEah~i~d~~~g~~~~~ 397 (809)
+++.+++.. +.++.|..... . .....+++|+..+. . ...++++|+||||++.+++|+..+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~ 226 (434)
T 2db3_A 147 NEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRR 226 (434)
T ss_dssp HHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCHHHHHH
T ss_conf 99999733478679999788887899998506998999874899999972885633277688751766630671999999
Q ss_pred HHHHC--CCCCCCCCCCCHHHHHHHHHHHHCCCCEE--------------EEECCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 98403--62210014881279999997420399607--------------853010261267699999998703899889
Q 003587 398 ALLGL--MADEIHLCGDPSVLDVVRKICSETGDELH--------------EQHYERFKPLVVEAKTLLGDLRNVRSGDCV 461 (809)
Q Consensus 398 il~~l--~~~~i~l~~s~~~~~li~~l~~~~~~~~~--------------~~~~~r~~~l~~~~k~ll~~l~~~~~g~~I 461 (809)
++..+ ....+.++.++|....+..++........ .+.+.... .......++..+..... .++
T Consensus 227 i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~-~~l 304 (434)
T 2db3_A 227 IMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN-KYAKRSKLIEILSEQAD-GTI 304 (434)
T ss_dssp HHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECC-GGGHHHHHHHHHHHCCT-TEE
T ss_pred HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHHHCCC-CEE
T ss_conf 9972578988569999556898999999986469889995356666665336999937-17779999999985799-879
Q ss_pred EEE-CHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEECCCCCCC
Q ss_conf 991-11679999999997139708998089999999999998626899848999354323534554-0099984987778
Q 003587 462 VAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (809)
Q Consensus 462 I~f-sr~~~~~l~~~L~~~~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATdvl~~GIDip-V~~VI~~d~~K~d 539 (809)
||+ +++.++.++..|.+. ++.+..+||++++.+|..+++.|+ +|+.+|||||+++++|||+| |++||+|++
T Consensus 305 VF~~t~~~a~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~--~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~---- 377 (434)
T 2db3_A 305 VFVETKRGADFLASFLSEK-EFPTTSIHGDRLQSQREQALRDFK--NGSMKVLIATSVASRGLDIKNIKHVINYDM---- 377 (434)
T ss_dssp EECSSHHHHHHHHHHHHHT-TCCEEEESTTSCHHHHHHHHHHHH--TSSCSEEEECGGGTSSCCCTTCCEEEESSC----
T ss_pred EEEECCHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHH--CCCCCEEEECHHHHCCCCCCCCCEEEEECC----
T ss_conf 9994718999999999867-998799849999999999999998--599939998206457788324898999789----
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 99766689868998873458899999962899982566
Q 003587 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (809)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (809)
|.+.++|+||+|||||.|. .|.|++|++++
T Consensus 378 -----p~~~~~y~qriGR~gR~g~---~G~a~~~~~~~ 407 (434)
T 2db3_A 378 -----PSKIDDYVHRIGRTGRVGN---NGRATSFFDPE 407 (434)
T ss_dssp -----CSSHHHHHHHHTTSSCTTC---CEEEEEEECTT
T ss_pred -----CCCHHHHHHHHCCCCCCCC---CCEEEEEEECC
T ss_conf -----9998899998160655899---87799998064
No 5
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=325.28 Aligned_cols=310 Identities=18% Similarity=0.226 Sum_probs=220.2
Q ss_pred CCCCCCCC--CCHHHHHHCCCEEEEECCCCCHHHHHHHHHHH----CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 79999875--00037760997099985799727999999997----1991999946476799999999842972033206
Q 003587 277 ADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTG 350 (809)
Q Consensus 277 ~g~~~Pt~--~~p~~~il~grdviv~apTGSGKTl~~L~~L~----~~~~~IvlsPtR~LA~Qi~~~l~~~g~~~~l~~G 350 (809)
.....|++ ...+..+++|++++++||||||||++++.++. .++++||++|||+||.|+++++.++...+++++|
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltG 259 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTG 259 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECS
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 47999999999999999769988998899997199999999999755974999908499999999999998289218967
Q ss_pred CCCCCCCCCCCEEEEEEECCC----C----CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH---HHH
Q ss_conf 210232457614663443156----8----76218998065211113322478999840362210014881279---999
Q 003587 351 QEKKLVPFSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL---DVV 419 (809)
Q Consensus 351 ~~~~~~~~~~~i~~tie~lt~----~----rli~~iVIDEah~i~d~~~g~~~~~il~~l~~~~i~l~~s~~~~---~li 419 (809)
+.... .....+++|++++.. + +.++++||||||++.+++|+..|..++..++.....++.++|.. .+.
T Consensus 260 d~~~~-~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a 338 (1108)
T 3l9o_A 260 DITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFA 338 (1108)
T ss_dssp SCBCC-CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHH
T ss_pred CCCCC-CCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 65268-99998996769999999747543223789987002120230068999999986477764999728889879999
Q ss_pred HHHHHHCCCCE-----------EEEEC-CC-----------CCH------------H-----------------------
Q ss_conf 99742039960-----------78530-10-----------261------------2-----------------------
Q 003587 420 RKICSETGDEL-----------HEQHY-ER-----------FKP------------L----------------------- 441 (809)
Q Consensus 420 ~~l~~~~~~~~-----------~~~~~-~r-----------~~~------------l----------------------- 441 (809)
..+........ ..+.+ .. ... +
T Consensus 339 ~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 418 (1108)
T 3l9o_A 339 EWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKG 418 (1108)
T ss_dssp HHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------
T ss_pred HHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99985158982798347875540689862477642564144220115668999999875411332112343322223445
Q ss_pred -------HHHHHHHHHHHHHCCCCCEEEEE-CHHHHHHHHHHHHHH----------------------------------
Q ss_conf -------67699999998703899889991-116799999999971----------------------------------
Q 003587 442 -------VVEAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKH---------------------------------- 479 (809)
Q Consensus 442 -------~~~~k~ll~~l~~~~~g~~II~f-sr~~~~~l~~~L~~~---------------------------------- 479 (809)
......++..+.....+.+|||+ +++.|+.++..|...
T Consensus 419 ~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~ 498 (1108)
T 3l9o_A 419 GSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKH 498 (1108)
T ss_dssp ------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 55443205689999999996289988999584878999999998646997778999999999887504644330056887
Q ss_pred ----CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----39708998089999999999998626899848999354323534554-0099984987778997666898689988
Q 003587 480 ----TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQI 554 (809)
Q Consensus 480 ----~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATdvl~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr 554 (809)
....+.++||+|++.+|..+++.|+ +|.++|||||+++++|||+| +++||+++. +|++...+|.|..+|+||
T Consensus 499 l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~--~G~ikVLVAT~vla~GIDiP~v~~VI~~~~-~~d~~~~r~iS~~eyiQr 575 (1108)
T 3l9o_A 499 ILPLLRRGIGIHHSGLLPILKEVIEILFQ--EGFLKVLFATETFSIGLNMPAKTVVFTSVR-KWDGQQFRWVSGGEYIQM 575 (1108)
T ss_dssp HTHHHHHTEEEECSCSCHHHHHHHHHHHH--HTCCCEEEEESCCCSCCCC--CEEEESCSE-EESSSCEEECCHHHHHHH
T ss_pred HHHHHHCCEEEECCCCCHHHHHHHHHHHH--CCCCEEEEECCHHHCCCCCCCCEEEEECCC-CCCCCCCCCCCHHHHHHH
T ss_conf 87765157565258998999999999986--799849998727765778787459996576-668644563899999976
Q ss_pred HCCCCCCCCCCCCEEEEEEECC--CHHHHHHHHCCCCHH
Q ss_conf 7345889999996289998256--699999997399258
Q 003587 555 AGRAGRRGSIYPDGLTTTLNLD--DLDYLIECLKQPFEV 591 (809)
Q Consensus 555 ~GRAGR~G~~~~~G~~i~l~~~--d~~~l~~~l~~~~~~ 591 (809)
+|||||.|. ...|.|+.++.+ +...+.+++....++
T Consensus 576 ~GRAGR~G~-d~~G~~ill~~~~~~~~~~~~l~~~~~~~ 613 (1108)
T 3l9o_A 576 SGRAGRRGL-DDRGIVIMMIDEKMEPQVAKGMVKGQADR 613 (1108)
T ss_dssp HHHSCCSSS-CSSEEEEEEECCCCCHHHHHHHHHCCCCC
T ss_pred HCCCCCCCC-CCCEEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 363477899-98559999955886899999996199963
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=321.89 Aligned_cols=302 Identities=14% Similarity=0.156 Sum_probs=214.1
Q ss_pred HHHHHHHCCCCCCCCCC--HHHHHH--CCCEEEEECCCCCHHHHHHHHHHH----C-------CCCEEEECCCHHHHHHH
Q ss_conf 99999967999987500--037760--997099985799727999999997----1-------99199994647679999
Q 003587 270 FRAMIESADLTKPHTWF--PFARVM--KRKIIYHCGPTNSGKTYNALQRFM----E-------AKKGIYCSPLRLLAMEV 334 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~~~--p~~~il--~grdviv~apTGSGKTl~~L~~L~----~-------~~~~IvlsPtR~LA~Qi 334 (809)
+++++...||..|++++ .+..++ .+++++++||||||||++++.+++ . .+++||++|||+||.|+
T Consensus 32 l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~ 111 (579)
T 3sqw_A 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 111 (579)
T ss_dssp HHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf 99999977999999999999999980599839998379867999999999999984133566897699982519999999
Q ss_pred HHHHHHCC--------CCEE-EEECCCCCCC------CCCCCEEEEEEECC---------CCCCCCEEEEECCCCCCCCC
Q ss_conf 99998429--------7203-3206210232------45761466344315---------68762189980652111133
Q 003587 335 FDKVNALG--------VYCS-LLTGQEKKLV------PFSNHIACTVEMVS---------TDEMYDVAVIDEIQMMSDAC 390 (809)
Q Consensus 335 ~~~l~~~g--------~~~~-l~~G~~~~~~------~~~~~i~~tie~lt---------~~rli~~iVIDEah~i~d~~ 390 (809)
++++..+. ..+. +.+|...... .....+++|++.+. ....++++||||||++++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g 191 (579)
T 3sqw_A 112 EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG 191 (579)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCCC
T ss_conf 99999998543466663799998990679999998459999999898999999984554341338899998837764478
Q ss_pred CHHHHHHHHHHCCC-------CCCCCCCCCHHHHHHHHHHHHCCCCEEEE------------------ECCCCCHHH---
Q ss_conf 22478999840362-------21001488127999999742039960785------------------301026126---
Q 003587 391 RGYAWTRALLGLMA-------DEIHLCGDPSVLDVVRKICSETGDELHEQ------------------HYERFKPLV--- 442 (809)
Q Consensus 391 ~g~~~~~il~~l~~-------~~i~l~~s~~~~~li~~l~~~~~~~~~~~------------------~~~r~~~l~--- 442 (809)
|..++..++..++. ..+.++.++|..+.+..+........... .+.......
T Consensus 192 f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 271 (579)
T 3sqw_A 192 FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSI 271 (579)
T ss_dssp THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCHHHHH
T ss_conf 79999999987455311465674599993568868999999976998259996057666554034315999944226559
Q ss_pred -HHHHHHHHHHHHCC-CCCEEEEE-CHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf -76999999987038-99889991-116799999999971--39708998089999999999998626899848999354
Q 003587 443 -VEAKTLLGDLRNVR-SGDCVVAF-SRREIFEVKMAIEKH--TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517 (809)
Q Consensus 443 -~~~k~ll~~l~~~~-~g~~II~f-sr~~~~~l~~~L~~~--~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATd 517 (809)
.....+...+.... .+.+|||+ ++..++.++..|.+. .++.+..+||++++++|..+++.|+ +|+.+|||||+
T Consensus 272 ~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~--~g~~~vLVaT~ 349 (579)
T 3sqw_A 272 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK--KDESGILVCTD 349 (579)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHH--HCSSEEEEECG
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHH--CCCCEEEEECC
T ss_conf 9999999999861378983899889289999999999875247972798418899999999999863--58871999814
Q ss_pred CCCCCCCCC-CCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 323534554-00999849877789976668986899887345889999996289998256699999997
Q 003587 518 AVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (809)
Q Consensus 518 vl~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l 585 (809)
++++|||+| |++||++++ |.+...|+||+|||||.|. .|.|++|+.+++....+.+
T Consensus 350 ~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~---~g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 350 VGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGK---EGSSVLFICKDELPFVREL 406 (579)
T ss_dssp GGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTC---CEEEEEEEEGGGHHHHHHH
T ss_pred HHHCCCCCCCCCEEEECCC---------CCCHHHHHHHCCCCCCCCC---CCEEEEEECCCHHHHHHHH
T ss_conf 4545887356878998189---------9987776532264455899---7329999724189999999
No 7
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=321.04 Aligned_cols=302 Identities=15% Similarity=0.168 Sum_probs=213.5
Q ss_pred HHHHHHHCCCCCCCCCC--HHHHHH--CCCEEEEECCCCCHHHHHHHHHHH----C-------CCCEEEECCCHHHHHHH
Q ss_conf 99999967999987500--037760--997099985799727999999997----1-------99199994647679999
Q 003587 270 FRAMIESADLTKPHTWF--PFARVM--KRKIIYHCGPTNSGKTYNALQRFM----E-------AKKGIYCSPLRLLAMEV 334 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~~~--p~~~il--~grdviv~apTGSGKTl~~L~~L~----~-------~~~~IvlsPtR~LA~Qi 334 (809)
+.+++...||..|++++ .+..++ .+++++++||||||||++++.+++ . .+++||++||++||.|+
T Consensus 83 l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~ 162 (563)
T 3i5x_A 83 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 162 (563)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHH
T ss_conf 99999977999999999999999966799729998789997429999999999874234666770499982849999999
Q ss_pred HHHHHHC-----C---CCEEEEE-CCCCCCC------CCCCCEEEEEEECC---------CCCCCCEEEEECCCCCCCCC
Q ss_conf 9999842-----9---7203320-6210232------45761466344315---------68762189980652111133
Q 003587 335 FDKVNAL-----G---VYCSLLT-GQEKKLV------PFSNHIACTVEMVS---------TDEMYDVAVIDEIQMMSDAC 390 (809)
Q Consensus 335 ~~~l~~~-----g---~~~~l~~-G~~~~~~------~~~~~i~~tie~lt---------~~rli~~iVIDEah~i~d~~ 390 (809)
++++..+ + ..+.... |...... .....+++|++.+. ....++++||||||++++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~ 242 (563)
T 3i5x_A 163 EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG 242 (563)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCCC
T ss_conf 99999997423566760499998990779999997468999899892999999983441112551099983778775055
Q ss_pred CHHHHHHHHHHCCC-------CCCCCCCCCHHHHHHHHHHHHCCCCEEEE------------------ECCCCCHHH---
Q ss_conf 22478999840362-------21001488127999999742039960785------------------301026126---
Q 003587 391 RGYAWTRALLGLMA-------DEIHLCGDPSVLDVVRKICSETGDELHEQ------------------HYERFKPLV--- 442 (809)
Q Consensus 391 ~g~~~~~il~~l~~-------~~i~l~~s~~~~~li~~l~~~~~~~~~~~------------------~~~r~~~l~--- 442 (809)
|+..+..++..++. ..+.++.++|....+..+........... .+.......
T Consensus 243 f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (563)
T 3i5x_A 243 FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSI 322 (563)
T ss_dssp THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCHHHHHH
T ss_conf 09999999986111035676675599998168878999999863887617874157777552103754899872267669
Q ss_pred -HHHHHHHHHHHHCCCC-CEEEEE-CHHHHHHHHHHHHHH--CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf -7699999998703899-889991-116799999999971--39708998089999999999998626899848999354
Q 003587 443 -VEAKTLLGDLRNVRSG-DCVVAF-SRREIFEVKMAIEKH--TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD 517 (809)
Q Consensus 443 -~~~k~ll~~l~~~~~g-~~II~f-sr~~~~~l~~~L~~~--~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATd 517 (809)
.....+...+.....+ .+|||+ +++.++.++..|.+. .++.+..+||++++++|..+++.|+ +|+.+|||||+
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~--~g~~~vLvaT~ 400 (563)
T 3i5x_A 323 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFK--KDESGILVCTD 400 (563)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHH--HCSSEEEEECG
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH--CCCCCEEEECC
T ss_conf 9999999999861378872899948179999999999874247960898258899999999999986--68998899836
Q ss_pred CCCCCCCCC-CCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 323534554-00999849877789976668986899887345889999996289998256699999997
Q 003587 518 AVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (809)
Q Consensus 518 vl~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l 585 (809)
++++|||+| |++||++++ |.+..+|+||+|||||.|. .|.|++|+.+++....+.+
T Consensus 401 ~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~---~g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 401 VGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGK---EGSSVLFICKDELPFVREL 457 (563)
T ss_dssp GGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTC---CEEEEEEEEGGGHHHHHHH
T ss_pred HHHCCCCCCCCCEEEEECC---------CCCHHHHHHHCCCCCCCCC---CCEEEEEECHHHHHHHHHH
T ss_conf 6646898426777999799---------9964246464272356999---8539999750488999999
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=314.54 Aligned_cols=314 Identities=14% Similarity=0.153 Sum_probs=217.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCC--CHHHHHHCC--CEEEEECCCCCHHHHHHHHHHHC-------CCCEEEECCCHH
Q ss_conf 1490799999999996799998750--003776099--70999857997279999999971-------991999946476
Q 003587 261 EEFPDEIKRFRAMIESADLTKPHTW--FPFARVMKR--KIIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRL 329 (809)
Q Consensus 261 ~~f~~~l~~i~~~l~~~g~~~Pt~~--~p~~~il~g--rdviv~apTGSGKTl~~L~~L~~-------~~~~IvlsPtR~ 329 (809)
..++..+ ++++...||..|+++ ..++.++.+ ++++++||||||||++++.+++. .+++||++|+++
T Consensus 97 ~~l~~~l---~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~ 173 (479)
T 3fmp_B 97 LRLKPQL---LQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYE 173 (479)
T ss_dssp GTCCHHH---HHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHH
T ss_pred CCCCHHH---HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 6999999---9999975999999899999999974899858998579983519999999998763478874799938399
Q ss_pred HHHHHHHHHHHCCC-----CEEEEECCCCC--CCC-CCCCEEEEEEEC-----C----CCCCCCEEEEECCCCCCC-CCC
Q ss_conf 79999999984297-----20332062102--324-576146634431-----5----687621899806521111-332
Q 003587 330 LAMEVFDKVNALGV-----YCSLLTGQEKK--LVP-FSNHIACTVEMV-----S----TDEMYDVAVIDEIQMMSD-ACR 391 (809)
Q Consensus 330 LA~Qi~~~l~~~g~-----~~~l~~G~~~~--~~~-~~~~i~~tie~l-----t----~~rli~~iVIDEah~i~d-~~~ 391 (809)
||.|+++.+..++. .+.+..+.... ... ....+++|+..+ . +...++++||||||++.+ .++
T Consensus 174 La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~ 253 (479)
T 3fmp_B 174 LALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGH 253 (479)
T ss_dssp HHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCC
T ss_conf 99999999999972288745999968864021114789989978638999997269967233989999777888441896
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC--------------CCHHHHHHHHHHHHHHHCCC
Q ss_conf 2478999840362210014881279999997420399607853010--------------26126769999999870389
Q 003587 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER--------------FKPLVVEAKTLLGDLRNVRS 457 (809)
Q Consensus 392 g~~~~~il~~l~~~~i~l~~s~~~~~li~~l~~~~~~~~~~~~~~r--------------~~~l~~~~k~ll~~l~~~~~ 457 (809)
......++..++...+.++.++|....+..++.............. ..........+...+.....
T Consensus 254 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 333 (479)
T 3fmp_B 254 QDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITI 333 (479)
T ss_dssp HHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 78999999638854649999487887999999997699869962664567677669999947778899999999852567
Q ss_pred CCEEEEE-CHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEECCC
Q ss_conf 9889991-11679999999997139708998089999999999998626899848999354323534554-009998498
Q 003587 458 GDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (809)
Q Consensus 458 g~~II~f-sr~~~~~l~~~L~~~~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATdvl~~GIDip-V~~VI~~d~ 535 (809)
+.++||+ ++..+..++..|... ++.+..+||++++.+|..+++.|+ +|+.+|||||+++++|||+| |++||++++
T Consensus 334 ~~~lvF~~s~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~--~g~~~iLv~T~~~~~GlDip~v~~VI~~d~ 410 (479)
T 3fmp_B 334 AQAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMVEQRAAVIERFR--EGKEKVLVTTNVCARGIDVEQVSVVINFDL 410 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEECCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHH--CCCCCEEEECCCCCCCCCCCCCCEEEEECC
T ss_conf 86699968688999999999758-951899608899999999999997--699959998442116776223998999669
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCH-HHHHHHHC
Q ss_conf 7778997666898689988734588999999628999825669-99999973
Q 003587 536 SKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL-DYLIECLK 586 (809)
Q Consensus 536 ~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~-~~l~~~l~ 586 (809)
+..... ..+..+|+||+|||||.|. .|.|++|+++.. ....+.+.
T Consensus 411 p~~~~~---~~s~~~~~Qr~GRagR~g~---~G~~i~~~~~~~~~~~~~~i~ 456 (479)
T 3fmp_B 411 PVDKDG---NPDNETYLHRIGRTGRFGK---RGLAVNMVDSKHSMNILNRIQ 456 (479)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCC---CCCHHHHHHHHCCCCCCCC---CCEEEEEECCCCHHHHHHHHH
T ss_conf 998766---7789999987243356999---843999974730599999999
No 9
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=313.63 Aligned_cols=298 Identities=23% Similarity=0.301 Sum_probs=216.4
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHH----HCCCCEEEECCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCC
Q ss_conf 03776099709998579972799999999----71991999946476799999999842--9720332062102324576
Q 003587 287 PFARVMKRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPFSN 360 (809)
Q Consensus 287 p~~~il~grdviv~apTGSGKTl~~L~~L----~~~~~~IvlsPtR~LA~Qi~~~l~~~--g~~~~l~~G~~~~~~~~~~ 360 (809)
.+..+++|++++++||||||||++++.++ ..++++||++|+++||.|+++++.++ +..+++++|..... ....
T Consensus 47 aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~~-~~~~ 125 (997)
T 4a4z_A 47 AVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQIN-PDAN 125 (997)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEEC-TTSS
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCC
T ss_conf 999998499899997999858999999999998359859999587999999999999976998399996898667-9999
Q ss_pred CEEEEEEECCC--------CCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHH---HHHHHHHHHHCCCC
Q ss_conf 14663443156--------87621899806521111332247899984036221001488127---99999974203996
Q 003587 361 HIACTVEMVST--------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV---LDVVRKICSETGDE 429 (809)
Q Consensus 361 ~i~~tie~lt~--------~rli~~iVIDEah~i~d~~~g~~~~~il~~l~~~~i~l~~s~~~---~~li~~l~~~~~~~ 429 (809)
.+++|++++.. ...++++||||||++.+++||..|..++..++.....++.++|. ......+.......
T Consensus 126 IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~ 205 (997)
T 4a4z_A 126 CLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKN 205 (997)
T ss_dssp EEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCC
T ss_pred EEEECHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 89988999999998181120578899998954666654489999999854668878997699897689999983235886
Q ss_pred ------------EEEEECC---------CCC-------------------------------------------------
Q ss_conf ------------0785301---------026-------------------------------------------------
Q 003587 430 ------------LHEQHYE---------RFK------------------------------------------------- 439 (809)
Q Consensus 430 ------------~~~~~~~---------r~~------------------------------------------------- 439 (809)
+....+. ...
T Consensus 206 ~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 206 IYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp EEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred EEEEECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 59983688875646888548750000042035667779999998632243343210000012222234444321235433
Q ss_pred ---------------------------------HHHHHHHHHHHHHHHCCCCCEEEEE-CHHHHHHHHHHHHHH------
Q ss_conf ---------------------------------1267699999998703899889991-116799999999971------
Q 003587 440 ---------------------------------PLVVEAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKH------ 479 (809)
Q Consensus 440 ---------------------------------~l~~~~k~ll~~l~~~~~g~~II~f-sr~~~~~l~~~L~~~------ 479 (809)
+.......++..+.....+.+|||+ +++.|+.++..|...
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~ 365 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNK 365 (997)
T ss_dssp -------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCHH
T ss_conf 34444455544444334443456654221224666668999999998479997899989888999999998457999778
Q ss_pred --------------------------------CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf --------------------------------397089980899999999999986268998489993543235345540
Q 003587 480 --------------------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNI 527 (809)
Q Consensus 480 --------------------------------~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATdvl~~GIDipV 527 (809)
....+.++||+|++.+|..+++.|. .|.++|||||++++||||+|-
T Consensus 366 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~--~G~~kVLvAT~~~a~GIDiP~ 443 (997)
T 4a4z_A 366 EKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFS--KGFIKVLFATETFAMGLNLPT 443 (997)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH--TTCCSEEEECTHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHH--CCCCCEEEECHHHHCCCCCCC
T ss_conf 899999999999974465442112478788886368466249999999999999997--799839997208667798888
Q ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEC---CCHHHHHHHHCCC
Q ss_conf 099984987778997666898689988734588999999628999825---6699999997399
Q 003587 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL---DDLDYLIECLKQP 588 (809)
Q Consensus 528 ~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~---~d~~~l~~~l~~~ 588 (809)
+.||+++.+||||....|.+..+|+|++|||||.|. ...|.|+.++. .+...+...+...
T Consensus 444 ~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~-~~~G~vi~l~~~~~~~~~~~~~~i~~~ 506 (997)
T 4a4z_A 444 RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL-DSTGTVIVMAYNSPLSIATFKEVTMGV 506 (997)
T ss_dssp SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT-CSSEEEEEECCSSCCCHHHHHHHHHSC
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCC-CCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 669994053246766777999998277413356887-763599996488852399999996089
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=313.29 Aligned_cols=297 Identities=18% Similarity=0.210 Sum_probs=212.6
Q ss_pred HHHHHHHCCCCCCCCC--CHHHHHHCCCEEEEECCCCCHHHHHHHHHHHC-------------------------CCCEE
Q ss_conf 9999996799998750--00377609970999857997279999999971-------------------------99199
Q 003587 270 FRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFME-------------------------AKKGI 322 (809)
Q Consensus 270 i~~~l~~~g~~~Pt~~--~p~~~il~grdviv~apTGSGKTl~~L~~L~~-------------------------~~~~I 322 (809)
+.+++...||..|+++ ..++.+++|++++++||||||||++++.+++. .+++|
T Consensus 26 l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (417)
T 2i4i_A 26 IMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISL 105 (417)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCEE
T ss_conf 99999977999998899999998726998899907987798999999999997446410000011123344445796489
Q ss_pred EECCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCC------CCCCCEEEEEEECC----C----CCCCCEEEEECCC
Q ss_conf 99464767999999998429----72033206210232------45761466344315----6----8762189980652
Q 003587 323 YCSPLRLLAMEVFDKVNALG----VYCSLLTGQEKKLV------PFSNHIACTVEMVS----T----DEMYDVAVIDEIQ 384 (809)
Q Consensus 323 vlsPtR~LA~Qi~~~l~~~g----~~~~l~~G~~~~~~------~~~~~i~~tie~lt----~----~rli~~iVIDEah 384 (809)
|++|||+||.|+++++.+++ ..+..+.|...... .....+++|++.+. . ...++++||||||
T Consensus 106 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah 185 (417)
T 2i4i_A 106 VLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEAD 185 (417)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHH
T ss_pred EECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHH
T ss_conf 98892999999999999982758804999988998799999860799999989699999997499376359599997836
Q ss_pred CCCCCCCHHHHHHHHHH--CCC--CCCCCCCCCHHHHHHHHHHHHCCCCE--------------EEEECCCCCHHHHHHH
Q ss_conf 11113322478999840--362--21001488127999999742039960--------------7853010261267699
Q 003587 385 MMSDACRGYAWTRALLG--LMA--DEIHLCGDPSVLDVVRKICSETGDEL--------------HEQHYERFKPLVVEAK 446 (809)
Q Consensus 385 ~i~d~~~g~~~~~il~~--l~~--~~i~l~~s~~~~~li~~l~~~~~~~~--------------~~~~~~r~~~l~~~~k 446 (809)
++.+++|...+..++.. ++. ..+.++.++|....+..+........ +.+.+.... ......
T Consensus 186 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 264 (417)
T 2i4i_A 186 RMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVE-ESDKRS 264 (417)
T ss_dssp HHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECC-GGGHHH
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEC-CHHHHH
T ss_conf 7536586999999997354897677489999985799999999997589789980787777557427899926-076899
Q ss_pred HHHHHHHHCCCCC-EEEEE-CHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 9999987038998-89991-116799999999971397089980899999999999986268998489993543235345
Q 003587 447 TLLGDLRNVRSGD-CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524 (809)
Q Consensus 447 ~ll~~l~~~~~g~-~II~f-sr~~~~~l~~~L~~~~g~~v~~ihg~l~~e~R~~~~~~F~~~~g~~~ILVATdvl~~GID 524 (809)
.+...+.....+. ++||+ ++..++.++..|.+. ++.+..+||++++++|..+++.|+ +|+.+|||||+++++|+|
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~vlvaT~~~~~Gid 341 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-GYACTSIHGDRSQRDREEALHQFR--SGKSPILVATAVAARGLD 341 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHH--HTSSCEEEECHHHHTTSC
T ss_pred HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHH--CCCCCEEEECCHHHCCCC
T ss_conf 99999985589971999979889999999999977-997467108999899999999997--699979998974434787
Q ss_pred CC-CCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHH
Q ss_conf 54-00999849877789976668986899887345889999996289998256699999
Q 003587 525 LN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (809)
Q Consensus 525 ip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~ 582 (809)
+| +++||++++ |.+..+|+||+||+||.|. .|.|++|+++++....
T Consensus 342 ip~v~~Vi~~~~---------p~s~~~~~Qr~GR~gR~g~---~g~~~~~~~~~~~~~~ 388 (417)
T 2i4i_A 342 ISNVKHVINFDL---------PSDIEEYVHRIGRTGRVGN---LGLATSFFNERNINIT 388 (417)
T ss_dssp CCCEEEEEESSC---------CSSHHHHHHHHTTBCC--C---CEEEEEEECGGGGGGH
T ss_pred CCCCCEEEEECC---------CCCHHHHHHHCCCCCCCCC---CCEEEEEECCCCHHHH
T ss_conf 346898999769---------9998999986284314899---7259998762438999
Done!