Query 003589
Match_columns 808
No_of_seqs 687 out of 4529
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 5E-72 1.1E-76 656.4 29.4 492 221-748 2-495 (646)
2 PLN02631 ferric-chelate reduct 100.0 1.1E-46 2.4E-51 438.9 29.0 315 398-775 150-492 (699)
3 PLN02292 ferric-chelate reduct 100.0 4.8E-45 1E-49 426.2 31.4 333 398-795 167-527 (702)
4 PLN02844 oxidoreductase/ferric 100.0 1E-43 2.2E-48 416.2 32.3 292 398-744 153-448 (722)
5 COG4097 Predicted ferric reduc 100.0 3.4E-33 7.3E-38 292.8 27.5 316 409-775 49-383 (438)
6 cd06189 flavin_oxioreductase N 99.9 8.2E-22 1.8E-26 205.1 18.4 169 603-796 1-185 (224)
7 PRK08051 fre FMN reductase; Va 99.9 1.7E-21 3.6E-26 204.0 19.4 171 601-796 3-189 (232)
8 cd06210 MMO_FAD_NAD_binding Me 99.9 3.4E-21 7.4E-26 202.0 18.7 173 601-797 2-196 (236)
9 cd06186 NOX_Duox_like_FAD_NADP 99.9 2.2E-21 4.7E-26 199.8 16.8 168 606-793 2-193 (210)
10 cd06217 FNR_iron_sulfur_bindin 99.9 8.3E-21 1.8E-25 198.8 19.6 175 600-796 1-195 (235)
11 cd06209 BenDO_FAD_NAD Benzoate 99.9 8.5E-21 1.8E-25 198.0 19.5 169 602-796 3-188 (228)
12 cd06216 FNR_iron_sulfur_bindin 99.9 1.4E-20 3.1E-25 198.3 20.5 181 589-796 2-204 (243)
13 cd06211 phenol_2-monooxygenase 99.9 1.2E-20 2.6E-25 198.3 19.0 172 601-796 7-198 (238)
14 cd06215 FNR_iron_sulfur_bindin 99.9 1.4E-20 3.1E-25 196.6 19.4 172 603-796 1-191 (231)
15 cd06191 FNR_iron_sulfur_bindin 99.9 1.8E-20 4E-25 195.9 20.2 172 604-797 2-192 (231)
16 cd06212 monooxygenase_like The 99.9 1.3E-20 2.7E-25 197.3 18.8 172 602-797 2-193 (232)
17 cd06187 O2ase_reductase_like T 99.9 1.1E-20 2.4E-25 196.5 17.6 169 605-796 1-185 (224)
18 cd06190 T4MO_e_transfer_like T 99.9 1.1E-20 2.4E-25 197.7 17.6 171 606-797 2-191 (232)
19 cd06184 flavohem_like_fad_nad_ 99.9 3.5E-20 7.6E-25 195.7 21.6 177 599-794 5-202 (247)
20 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.2E-20 2.7E-25 208.6 18.6 173 599-796 101-293 (339)
21 cd06195 FNR1 Ferredoxin-NADP+ 99.8 1.7E-20 3.7E-25 197.4 17.8 166 604-793 1-185 (241)
22 cd06188 NADH_quinone_reductase 99.8 1.7E-20 3.6E-25 202.3 17.4 173 600-796 9-240 (283)
23 cd06213 oxygenase_e_transfer_s 99.8 3.2E-20 7E-25 193.6 18.1 170 602-796 2-190 (227)
24 PRK11872 antC anthranilate dio 99.8 3.5E-20 7.6E-25 204.8 19.1 172 599-795 105-295 (340)
25 PRK10684 HCP oxidoreductase, N 99.8 7.5E-20 1.6E-24 201.7 20.0 171 601-795 10-196 (332)
26 cd06214 PA_degradation_oxidore 99.8 1.2E-19 2.5E-24 191.0 20.5 172 601-794 2-194 (241)
27 cd06221 sulfite_reductase_like 99.8 9.5E-20 2.1E-24 193.2 18.3 165 605-796 1-185 (253)
28 cd00322 FNR_like Ferredoxin re 99.8 1.5E-19 3.2E-24 187.4 19.1 160 607-789 2-177 (223)
29 cd06197 FNR_like_2 FAD/NAD(P) 99.8 7E-20 1.5E-24 190.1 16.4 168 607-794 2-208 (220)
30 PRK10926 ferredoxin-NADP reduc 99.8 1.8E-19 4E-24 190.4 19.7 168 600-792 4-189 (248)
31 cd06196 FNR_like_1 Ferredoxin 99.8 1.2E-19 2.5E-24 188.1 17.6 164 602-796 2-181 (218)
32 PRK13289 bifunctional nitric o 99.8 2.5E-19 5.4E-24 202.6 21.4 177 598-796 152-353 (399)
33 PRK00054 dihydroorotate dehydr 99.8 2.6E-19 5.6E-24 189.6 19.5 164 600-795 4-177 (250)
34 PRK08221 anaerobic sulfite red 99.8 3.2E-19 6.8E-24 190.2 19.4 164 601-795 8-185 (263)
35 cd06183 cyt_b5_reduct_like Cyt 99.8 3E-19 6.5E-24 186.8 18.7 171 604-797 2-194 (234)
36 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 2.9E-19 6.3E-24 198.7 19.7 170 601-792 2-193 (352)
37 PRK08345 cytochrome-c3 hydroge 99.8 3.6E-19 7.8E-24 192.4 19.2 145 600-767 5-169 (289)
38 cd06194 FNR_N-term_Iron_sulfur 99.8 2.1E-19 4.5E-24 186.7 16.6 141 605-767 1-157 (222)
39 cd06198 FNR_like_3 NAD(P) bind 99.8 2.7E-19 5.8E-24 185.1 16.9 140 613-773 7-160 (216)
40 PLN03116 ferredoxin--NADP+ red 99.8 5.2E-19 1.1E-23 192.7 19.9 172 600-794 24-247 (307)
41 PTZ00274 cytochrome b5 reducta 99.8 6.4E-19 1.4E-23 192.3 20.2 176 597-795 49-254 (325)
42 cd06219 DHOD_e_trans_like1 FAD 99.8 7.7E-19 1.7E-23 185.7 18.5 161 603-796 1-174 (248)
43 cd06192 DHOD_e_trans_like FAD/ 99.8 8.9E-19 1.9E-23 184.7 18.2 157 605-791 1-169 (243)
44 PRK06222 ferredoxin-NADP(+) re 99.8 1E-18 2.2E-23 188.1 18.7 162 603-797 2-176 (281)
45 COG1018 Hmp Flavodoxin reducta 99.8 2.2E-18 4.8E-23 182.6 20.3 146 599-765 4-166 (266)
46 cd06218 DHOD_e_trans FAD/NAD b 99.8 1E-18 2.2E-23 184.7 17.6 163 605-797 1-176 (246)
47 cd06208 CYPOR_like_FNR These f 99.8 1.7E-18 3.8E-23 186.9 19.7 171 601-794 9-226 (286)
48 PTZ00319 NADH-cytochrome B5 re 99.8 1.3E-18 2.8E-23 188.9 18.4 176 597-796 30-254 (300)
49 TIGR02911 sulfite_red_B sulfit 99.8 1.7E-18 3.7E-23 184.4 18.5 162 602-794 7-182 (261)
50 PRK05464 Na(+)-translocating N 99.8 2.4E-18 5.2E-23 194.8 18.4 172 601-796 134-364 (409)
51 COG5126 FRQ1 Ca2+-binding prot 99.8 1E-18 2.2E-23 168.3 12.6 143 163-318 13-159 (160)
52 KOG0534 NADH-cytochrome b-5 re 99.8 6.5E-18 1.4E-22 178.0 17.6 179 599-800 50-249 (286)
53 cd06220 DHOD_e_trans_like2 FAD 99.8 5.7E-18 1.2E-22 177.5 17.2 153 603-796 1-163 (233)
54 PLN03115 ferredoxin--NADP(+) r 99.8 9.5E-18 2.1E-22 185.2 19.3 170 602-794 92-306 (367)
55 TIGR01941 nqrF NADH:ubiquinone 99.8 3.8E-18 8.3E-23 192.9 16.5 171 601-795 130-359 (405)
56 COG0543 UbiB 2-polyprenylpheno 99.8 1.6E-17 3.6E-22 175.7 18.4 162 602-795 9-186 (252)
57 PLN02252 nitrate reductase [NA 99.8 1.5E-17 3.2E-22 201.7 20.3 178 597-797 631-849 (888)
58 KOG0034 Ca2+/calmodulin-depend 99.8 5.2E-18 1.1E-22 169.1 12.3 151 165-321 28-181 (187)
59 PRK05802 hypothetical protein; 99.8 2.6E-17 5.7E-22 179.7 18.8 125 601-745 65-198 (320)
60 cd06200 SiR_like1 Cytochrome p 99.7 3.6E-17 7.9E-22 172.6 18.2 130 614-765 17-167 (245)
61 PF08022 FAD_binding_8: FAD-bi 99.7 8.7E-20 1.9E-24 166.9 -1.8 100 601-712 2-104 (105)
62 PRK05713 hypothetical protein; 99.7 2.6E-17 5.7E-22 179.9 15.7 171 601-794 92-292 (312)
63 cd06182 CYPOR_like NADPH cytoc 99.7 1.2E-16 2.6E-21 170.6 18.1 152 613-792 15-200 (267)
64 TIGR03224 benzo_boxA benzoyl-C 99.7 1.1E-16 2.4E-21 180.7 18.7 167 601-794 143-350 (411)
65 KOG0027 Calmodulin and related 99.7 6.5E-17 1.4E-21 158.0 13.5 138 166-315 4-149 (151)
66 cd06185 PDR_like Phthalate dio 99.7 2.3E-16 4.9E-21 162.6 15.9 140 607-771 2-158 (211)
67 PF08414 NADPH_Ox: Respiratory 99.7 3.1E-17 6.8E-22 142.4 7.1 99 142-243 1-100 (100)
68 cd06201 SiR_like2 Cytochrome p 99.7 7.3E-16 1.6E-20 166.6 19.4 145 599-766 44-212 (289)
69 PRK12778 putative bifunctional 99.7 4.4E-16 9.6E-21 189.4 19.3 161 603-796 2-175 (752)
70 PRK12779 putative bifunctional 99.6 3.9E-15 8.5E-20 183.0 20.7 171 599-796 647-836 (944)
71 PRK12775 putative trifunctiona 99.6 7E-15 1.5E-19 182.3 19.1 163 603-797 2-177 (1006)
72 KOG0044 Ca2+ sensor (EF-Hand s 99.6 2.6E-15 5.7E-20 149.8 12.3 148 168-321 27-181 (193)
73 PTZ00306 NADH-dependent fumara 99.6 1.1E-14 2.3E-19 184.0 20.2 176 598-796 912-1122(1167)
74 PTZ00183 centrin; Provisional 99.6 4.5E-15 9.8E-20 145.2 12.7 143 164-318 11-157 (158)
75 cd06193 siderophore_interactin 99.6 1.6E-14 3.4E-19 151.7 14.2 119 605-744 1-145 (235)
76 PTZ00184 calmodulin; Provision 99.6 1.5E-14 3.3E-19 139.7 12.7 139 164-314 5-147 (149)
77 KOG0028 Ca2+-binding protein ( 99.5 7.9E-14 1.7E-18 131.4 11.6 139 166-316 29-171 (172)
78 PF01794 Ferric_reduct: Ferric 99.4 4.7E-13 1E-17 125.9 8.4 119 408-558 5-124 (125)
79 COG5126 FRQ1 Ca2+-binding prot 99.4 1.5E-12 3.2E-17 125.9 11.8 127 139-270 25-155 (160)
80 KOG0038 Ca2+-binding kinase in 99.4 6.6E-12 1.4E-16 116.1 12.2 145 168-320 26-182 (189)
81 KOG0031 Myosin regulatory ligh 99.3 1.1E-11 2.3E-16 116.3 12.0 134 166-315 28-165 (171)
82 KOG0027 Calmodulin and related 99.3 1.1E-11 2.3E-16 121.2 12.2 129 139-270 13-148 (151)
83 KOG0377 Protein serine/threoni 99.3 8.8E-12 1.9E-16 133.5 11.0 162 138-316 439-616 (631)
84 PF00970 FAD_binding_6: Oxidor 99.3 1.4E-11 3.1E-16 111.2 9.9 92 602-713 1-98 (99)
85 COG2871 NqrF Na+-transporting 99.2 3E-11 6.5E-16 123.7 10.4 167 615-794 149-363 (410)
86 cd06199 SiR Cytochrome p450- l 99.2 3.4E-11 7.3E-16 134.3 10.5 119 625-766 129-273 (360)
87 TIGR01931 cysJ sulfite reducta 99.2 5.1E-11 1.1E-15 140.8 10.2 139 626-794 367-532 (597)
88 KOG0028 Ca2+-binding protein ( 99.2 1.1E-10 2.5E-15 110.3 10.1 129 138-270 37-169 (172)
89 PRK06567 putative bifunctional 99.2 2.3E-10 4.9E-15 137.8 15.3 120 601-744 791-915 (1028)
90 KOG0030 Myosin essential light 99.2 2.7E-10 5.8E-15 105.3 11.1 137 167-314 8-150 (152)
91 PTZ00183 centrin; Provisional 99.2 2.9E-10 6.3E-15 111.1 12.2 126 141-270 24-153 (158)
92 KOG0037 Ca2+-binding protein, 99.1 2.7E-10 5.9E-15 113.5 11.4 132 169-317 56-190 (221)
93 PF13499 EF-hand_7: EF-hand do 99.1 2.5E-10 5.3E-15 95.1 8.3 66 244-313 1-66 (66)
94 cd06207 CyPoR_like NADPH cytoc 99.1 4.9E-10 1.1E-14 126.1 13.2 123 643-792 161-314 (382)
95 cd06203 methionine_synthase_re 99.1 5.5E-10 1.2E-14 126.2 13.5 133 643-794 171-332 (398)
96 KOG0036 Predicted mitochondria 99.1 5.7E-10 1.2E-14 119.9 10.9 132 170-318 14-149 (463)
97 PTZ00184 calmodulin; Provision 99.0 1.3E-09 2.9E-14 105.1 10.9 127 140-270 17-147 (149)
98 cd06206 bifunctional_CYPOR The 99.0 1.1E-09 2.4E-14 123.3 10.9 134 628-792 147-314 (384)
99 KOG0037 Ca2+-binding protein, 99.0 1.1E-09 2.4E-14 109.2 9.4 153 140-313 63-218 (221)
100 PRK06214 sulfite reductase; Pr 98.9 5.5E-09 1.2E-13 120.8 13.6 104 643-766 313-443 (530)
101 PRK10953 cysJ sulfite reductas 98.9 2.2E-09 4.7E-14 126.6 10.5 117 626-765 370-512 (600)
102 KOG3378 Globins and related he 98.9 2.9E-09 6.3E-14 108.6 8.7 135 598-749 147-292 (385)
103 KOG4223 Reticulocalbin, calume 98.9 4.8E-09 1E-13 110.3 8.9 167 141-320 120-306 (325)
104 PLN02964 phosphatidylserine de 98.9 6.6E-09 1.4E-13 121.4 9.8 100 167-271 140-243 (644)
105 cd06204 CYPOR NADPH cytochrome 98.8 2.1E-08 4.6E-13 114.0 13.2 125 643-767 175-330 (416)
106 KOG4223 Reticulocalbin, calume 98.8 2.2E-08 4.7E-13 105.4 9.8 148 160-318 67-231 (325)
107 cd06202 Nitric_oxide_synthase 98.8 4.4E-08 9.5E-13 111.1 12.6 125 644-794 175-337 (406)
108 cd05022 S-100A13 S-100A13: S-1 98.7 2.5E-08 5.4E-13 88.1 6.7 67 243-315 8-75 (89)
109 KOG0036 Predicted mitochondria 98.6 6.8E-08 1.5E-12 104.2 8.0 162 140-316 20-184 (463)
110 cd05026 S-100Z S-100Z: S-100Z 98.6 9E-08 2E-12 85.5 7.3 70 243-315 10-81 (93)
111 cd05027 S-100B S-100B: S-100B 98.6 1.1E-07 2.3E-12 84.1 6.5 70 243-315 8-79 (88)
112 KOG0034 Ca2+/calmodulin-depend 98.6 1.4E-07 3E-12 94.7 7.5 137 121-270 25-174 (187)
113 KOG0044 Ca2+ sensor (EF-Hand s 98.5 5.2E-07 1.1E-11 90.6 10.6 105 202-316 24-129 (193)
114 cd05025 S-100A1 S-100A1: S-100 98.5 3.9E-07 8.4E-12 81.3 7.4 70 242-315 8-80 (92)
115 PF13499 EF-hand_7: EF-hand do 98.5 2.9E-07 6.4E-12 76.4 5.9 61 206-269 2-66 (66)
116 cd05031 S-100A10_like S-100A10 98.4 4.5E-07 9.7E-12 81.2 6.5 70 243-316 8-80 (94)
117 PLN02964 phosphatidylserine de 98.4 1E-06 2.3E-11 103.3 10.6 99 204-317 143-245 (644)
118 PF00175 NAD_binding_1: Oxidor 98.4 5.3E-07 1.2E-11 82.4 6.4 72 724-798 1-85 (109)
119 cd00252 SPARC_EC SPARC_EC; ext 98.4 5.5E-07 1.2E-11 83.5 6.5 66 241-319 46-111 (116)
120 KOG2562 Protein phosphatase 2 98.4 8.2E-07 1.8E-11 97.4 7.9 137 171-311 279-420 (493)
121 cd00213 S-100 S-100: S-100 dom 98.3 1.3E-06 2.8E-11 77.1 7.0 70 243-315 8-79 (88)
122 smart00027 EH Eps15 homology d 98.3 1.2E-06 2.7E-11 78.7 7.0 65 242-316 9-73 (96)
123 cd05023 S-100A11 S-100A11: S-1 98.3 1.2E-06 2.5E-11 77.6 6.6 70 243-315 9-80 (89)
124 cd00052 EH Eps15 homology doma 98.3 1.3E-06 2.7E-11 72.5 6.1 61 246-316 2-62 (67)
125 cd05029 S-100A6 S-100A6: S-100 98.3 9.5E-07 2.1E-11 78.0 5.3 66 244-315 11-79 (88)
126 KOG0031 Myosin regulatory ligh 98.3 5.7E-06 1.2E-10 78.3 10.3 139 115-270 21-164 (171)
127 KOG4666 Predicted phosphate ac 98.3 2E-06 4.2E-11 90.1 7.9 142 165-320 218-364 (412)
128 PF13833 EF-hand_8: EF-hand do 98.1 4.4E-06 9.6E-11 66.5 5.9 50 221-270 2-52 (54)
129 KOG2643 Ca2+ binding protein, 98.1 1.2E-05 2.6E-10 87.7 10.5 158 143-314 208-383 (489)
130 cd00051 EFh EF-hand, calcium b 98.1 4.1E-06 8.9E-11 67.1 5.3 61 245-313 2-62 (63)
131 PF13833 EF-hand_8: EF-hand do 98.1 7.8E-06 1.7E-10 65.1 5.7 53 256-315 1-53 (54)
132 KOG4251 Calcium binding protei 98.0 9.8E-06 2.1E-10 81.8 7.1 186 120-314 96-308 (362)
133 PF00036 EF-hand_1: EF hand; 98.0 5.1E-06 1.1E-10 57.3 3.4 27 244-270 1-27 (29)
134 PRK05419 putative sulfite oxid 98.0 5.8E-05 1.3E-09 77.3 12.5 126 438-596 69-194 (205)
135 cd05022 S-100A13 S-100A13: S-1 98.0 1.3E-05 2.8E-10 70.9 6.6 63 205-270 9-74 (89)
136 cd05026 S-100Z S-100Z: S-100Z 98.0 2.1E-05 4.6E-10 70.3 7.6 64 205-270 11-80 (93)
137 cd05027 S-100B S-100B: S-100B 98.0 2.2E-05 4.7E-10 69.4 7.3 64 205-270 9-78 (88)
138 KOG0751 Mitochondrial aspartat 97.9 7.1E-05 1.5E-09 82.5 11.0 146 169-319 32-211 (694)
139 KOG2643 Ca2+ binding protein, 97.9 2E-05 4.4E-10 86.0 6.4 155 143-316 295-454 (489)
140 cd05025 S-100A1 S-100A1: S-100 97.9 4.2E-05 9E-10 68.2 7.3 65 204-270 9-79 (92)
141 cd05030 calgranulins Calgranul 97.9 4E-05 8.8E-10 67.7 7.1 69 244-315 9-79 (88)
142 PF14658 EF-hand_9: EF-hand do 97.8 3.4E-05 7.4E-10 63.4 5.9 62 247-315 2-64 (66)
143 cd00051 EFh EF-hand, calcium b 97.8 5.6E-05 1.2E-09 60.4 7.3 61 206-269 2-62 (63)
144 smart00027 EH Eps15 homology d 97.8 2.6E-05 5.6E-10 70.1 5.7 60 206-270 12-71 (96)
145 KOG0377 Protein serine/threoni 97.8 4E-05 8.6E-10 83.3 7.7 129 138-272 468-616 (631)
146 PF08030 NAD_binding_6: Ferric 97.8 2.8E-05 6E-10 76.0 5.4 57 719-775 1-79 (156)
147 COG0369 CysJ Sulfite reductase 97.8 0.0002 4.3E-09 84.0 12.7 110 645-765 372-499 (587)
148 cd05031 S-100A10_like S-100A10 97.7 9.4E-05 2E-09 66.2 7.5 65 205-270 9-78 (94)
149 KOG0030 Myosin essential light 97.7 0.00027 5.9E-09 66.1 10.1 110 202-319 9-120 (152)
150 cd00052 EH Eps15 homology doma 97.7 9.8E-05 2.1E-09 61.0 6.5 59 207-270 2-60 (67)
151 cd05029 S-100A6 S-100A6: S-100 97.7 8.3E-05 1.8E-09 65.7 6.2 48 222-269 27-77 (88)
152 KOG0041 Predicted Ca2+-binding 97.7 7.2E-05 1.6E-09 73.8 6.3 64 244-316 100-164 (244)
153 PF00036 EF-hand_1: EF hand; 97.7 5.2E-05 1.1E-09 52.3 3.7 27 289-315 2-28 (29)
154 cd05023 S-100A11 S-100A11: S-1 97.7 0.00015 3.4E-09 64.1 7.5 63 206-270 11-79 (89)
155 PF13405 EF-hand_6: EF-hand do 97.5 8E-05 1.7E-09 52.2 3.3 27 244-270 1-27 (31)
156 KOG4251 Calcium binding protei 97.5 6.9E-05 1.5E-09 75.8 3.8 135 170-315 101-264 (362)
157 PF13202 EF-hand_5: EF hand; P 97.5 0.0001 2.2E-09 49.0 3.1 25 245-269 1-25 (25)
158 cd00252 SPARC_EC SPARC_EC; ext 97.5 0.00029 6.3E-09 65.5 7.1 57 206-269 50-106 (116)
159 COG2717 Predicted membrane pro 97.5 0.00084 1.8E-08 68.0 10.9 123 441-596 72-194 (209)
160 PRK12309 transaldolase/EF-hand 97.5 0.00027 5.8E-09 79.2 8.0 55 240-315 331-385 (391)
161 cd00213 S-100 S-100: S-100 dom 97.4 0.00038 8.2E-09 61.3 7.1 63 205-270 9-78 (88)
162 KOG1158 NADP/FAD dependent oxi 97.4 0.0004 8.7E-09 81.6 8.2 89 644-744 420-516 (645)
163 cd05024 S-100A10 S-100A10: A s 97.3 0.00043 9.4E-09 61.0 5.8 67 245-315 10-76 (91)
164 KOG4065 Uncharacterized conser 97.3 0.0007 1.5E-08 61.0 7.1 72 240-312 64-142 (144)
165 KOG0040 Ca2+-binding actin-bun 97.3 0.00083 1.8E-08 82.2 9.9 134 166-314 2249-2397(2399)
166 cd05030 calgranulins Calgranul 97.2 0.00095 2.1E-08 59.0 7.1 65 206-271 10-79 (88)
167 KOG0038 Ca2+-binding kinase in 97.1 0.00073 1.6E-08 63.5 4.7 89 178-270 79-176 (189)
168 PF14788 EF-hand_10: EF hand; 96.9 0.0021 4.5E-08 50.1 5.5 48 223-270 1-48 (51)
169 PF13202 EF-hand_5: EF hand; P 96.9 0.0011 2.5E-08 44.0 3.4 23 291-313 3-25 (25)
170 PRK12309 transaldolase/EF-hand 96.8 0.0015 3.2E-08 73.3 5.0 57 197-270 328-384 (391)
171 KOG0751 Mitochondrial aspartat 96.7 0.0058 1.3E-07 67.9 8.6 115 143-270 83-206 (694)
172 PF12763 EF-hand_4: Cytoskelet 96.6 0.0049 1.1E-07 56.2 6.3 89 241-342 8-96 (104)
173 cd05024 S-100A10 S-100A10: A s 96.4 0.0085 1.8E-07 52.9 6.1 64 169-237 7-78 (91)
174 PF14658 EF-hand_9: EF-hand do 96.3 0.011 2.3E-07 48.9 6.1 59 209-270 3-63 (66)
175 KOG0041 Predicted Ca2+-binding 96.3 0.021 4.4E-07 56.9 8.9 98 206-310 101-198 (244)
176 COG2375 ViuB Siderophore-inter 96.3 0.073 1.6E-06 56.3 13.5 127 599-746 16-170 (265)
177 KOG1159 NADP-dependent flavopr 96.2 0.0097 2.1E-07 66.6 7.2 92 637-744 362-457 (574)
178 PF14788 EF-hand_10: EF hand; 96.2 0.016 3.4E-07 45.3 5.8 49 259-315 1-49 (51)
179 PF13405 EF-hand_6: EF-hand do 96.1 0.007 1.5E-07 42.3 3.6 26 290-315 3-28 (31)
180 PF10591 SPARC_Ca_bdg: Secrete 96.1 0.0029 6.4E-08 58.6 2.0 65 237-311 48-112 (113)
181 PF12763 EF-hand_4: Cytoskelet 96.1 0.013 2.8E-07 53.4 6.0 49 221-271 23-71 (104)
182 PF08021 FAD_binding_9: Sidero 95.8 0.08 1.7E-06 49.4 10.4 89 604-712 1-117 (117)
183 KOG0046 Ca2+-binding actin-bun 95.8 0.025 5.5E-07 63.6 7.8 67 244-316 20-86 (627)
184 KOG0040 Ca2+-binding actin-bun 95.4 0.017 3.6E-07 71.4 5.1 74 244-318 2254-2327(2399)
185 KOG3866 DNA-binding protein of 95.0 0.045 9.8E-07 57.6 6.2 89 225-313 225-322 (442)
186 KOG0169 Phosphoinositide-speci 95.0 0.28 6.1E-06 58.2 13.1 160 144-317 105-276 (746)
187 smart00054 EFh EF-hand, calciu 95.0 0.023 5.1E-07 37.3 2.7 26 245-270 2-27 (29)
188 KOG2562 Protein phosphatase 2 94.6 0.11 2.3E-06 58.1 8.1 133 171-314 226-378 (493)
189 smart00054 EFh EF-hand, calciu 94.4 0.058 1.3E-06 35.3 3.5 26 290-315 3-28 (29)
190 PF10591 SPARC_Ca_bdg: Secrete 93.7 0.16 3.4E-06 47.1 6.2 32 166-197 50-81 (113)
191 KOG0039 Ferric reductase, NADH 92.4 1 2.2E-05 54.4 12.2 79 184-270 2-88 (646)
192 KOG0046 Ca2+-binding actin-bun 91.1 0.37 8E-06 54.7 5.8 76 158-237 7-87 (627)
193 PF09279 EF-hand_like: Phospho 90.3 1 2.2E-05 39.0 6.8 68 244-318 1-72 (83)
194 KOG1707 Predicted Ras related/ 88.8 1.5 3.3E-05 50.8 8.6 149 168-319 193-347 (625)
195 KOG4666 Predicted phosphate ac 88.7 0.85 1.8E-05 48.9 6.0 96 170-270 259-358 (412)
196 KOG4065 Uncharacterized conser 87.4 1.2 2.6E-05 40.7 5.3 55 210-267 73-141 (144)
197 KOG4347 GTPase-activating prot 87.2 1.2 2.7E-05 52.0 6.6 60 202-265 553-612 (671)
198 PLN02952 phosphoinositide phos 86.3 3.5 7.6E-05 49.0 9.9 92 221-315 14-110 (599)
199 KOG1029 Endocytic adaptor prot 85.9 3.9 8.4E-05 48.6 9.6 62 243-314 195-256 (1118)
200 KOG4578 Uncharacterized conser 85.8 0.67 1.5E-05 49.6 3.3 69 244-319 334-402 (421)
201 KOG3555 Ca2+-binding proteogly 83.8 1 2.2E-05 48.6 3.6 63 242-316 249-311 (434)
202 PF09279 EF-hand_like: Phospho 82.0 2.6 5.7E-05 36.4 5.0 61 206-270 2-68 (83)
203 PF09069 EF-hand_3: EF-hand; 79.2 10 0.00023 33.6 7.7 72 242-320 2-80 (90)
204 PF08726 EFhand_Ca_insen: Ca2+ 78.2 0.94 2E-05 38.0 0.8 59 240-311 3-65 (69)
205 PF05042 Caleosin: Caleosin re 76.6 16 0.00035 36.2 9.0 136 170-313 7-164 (174)
206 KOG0169 Phosphoinositide-speci 74.6 9.8 0.00021 45.7 8.1 62 206-270 138-199 (746)
207 KOG0035 Ca2+-binding actin-bun 72.4 6 0.00013 48.6 5.8 101 166-267 743-848 (890)
208 KOG0035 Ca2+-binding actin-bun 66.3 15 0.00034 45.1 7.5 76 242-320 746-821 (890)
209 KOG4578 Uncharacterized conser 65.5 6.4 0.00014 42.5 3.7 53 219-271 345-398 (421)
210 KOG3555 Ca2+-binding proteogly 63.4 9.6 0.00021 41.5 4.5 59 170-233 250-308 (434)
211 KOG0998 Synaptic vesicle prote 61.7 4.8 0.0001 50.1 2.2 65 243-317 283-347 (847)
212 KOG1029 Endocytic adaptor prot 58.2 7.6 0.00017 46.3 2.9 63 171-236 196-258 (1118)
213 KOG1264 Phospholipase C [Lipid 57.4 66 0.0014 39.2 10.2 165 145-316 114-294 (1267)
214 KOG0042 Glycerol-3-phosphate d 53.7 12 0.00026 43.5 3.5 65 244-316 594-658 (680)
215 PLN02631 ferric-chelate reduct 53.2 25 0.00055 42.8 6.3 60 496-564 147-209 (699)
216 PF09068 EF-hand_2: EF hand; 49.9 1.9E+02 0.0042 27.3 10.5 103 207-314 3-124 (127)
217 KOG2243 Ca2+ release channel ( 49.8 21 0.00046 45.0 4.7 59 248-315 4062-4120(5019)
218 PF05517 p25-alpha: p25-alpha 49.7 1.1E+02 0.0023 30.0 9.1 49 222-270 17-68 (154)
219 KOG4347 GTPase-activating prot 49.5 19 0.00041 42.6 4.2 77 224-309 535-612 (671)
220 PF05517 p25-alpha: p25-alpha 47.8 64 0.0014 31.6 7.1 66 246-316 2-70 (154)
221 KOG1955 Ral-GTPase effector RA 47.3 12 0.00026 42.5 2.2 66 167-236 228-294 (737)
222 PLN02292 ferric-chelate reduct 46.5 41 0.00088 41.1 6.7 59 498-565 166-227 (702)
223 KOG4403 Cell surface glycoprot 41.9 1.6E+02 0.0034 33.4 9.5 52 219-274 80-132 (575)
224 KOG1955 Ral-GTPase effector RA 41.3 34 0.00074 39.0 4.5 61 245-315 233-293 (737)
225 PLN02952 phosphoinositide phos 37.7 94 0.002 37.3 7.7 84 183-270 13-109 (599)
226 PF00033 Cytochrom_B_N: Cytoch 37.3 1.9E+02 0.0041 28.4 9.0 27 440-466 44-70 (188)
227 PF09068 EF-hand_2: EF hand; 37.1 1.9E+02 0.0042 27.3 8.3 104 142-270 11-124 (127)
228 PLN02844 oxidoreductase/ferric 35.9 1.1E+02 0.0024 37.6 8.2 58 498-564 152-212 (722)
229 PF05042 Caleosin: Caleosin re 35.8 53 0.0012 32.7 4.4 27 170-196 96-122 (174)
230 COG4097 Predicted ferric reduc 35.2 1.4E+02 0.003 33.5 7.8 63 494-564 33-96 (438)
231 KOG2243 Ca2+ release channel ( 34.7 35 0.00076 43.3 3.4 57 175-234 4062-4119(5019)
232 cd02977 ArsC_family Arsenate R 34.7 69 0.0015 28.8 4.8 64 249-322 26-92 (105)
233 PRK10639 formate dehydrogenase 34.5 1.6E+02 0.0036 30.2 8.1 23 541-563 146-169 (211)
234 PF01794 Ferric_reduct: Ferric 34.5 80 0.0017 28.8 5.3 51 506-565 2-55 (125)
235 PF09842 DUF2069: Predicted me 34.4 3.7E+02 0.0081 24.7 10.7 52 444-527 54-105 (109)
236 PF01292 Ni_hydr_CYTB: Prokary 33.1 3.5E+02 0.0076 26.4 10.1 22 443-464 43-64 (182)
237 MTH00053 CYTB cytochrome b; Pr 32.4 6E+02 0.013 28.8 12.7 36 490-526 270-310 (381)
238 PF14358 DUF4405: Domain of un 31.9 47 0.001 27.2 2.9 25 440-464 39-63 (64)
239 MTH00074 CYTB cytochrome b; Pr 31.9 8E+02 0.017 27.8 14.7 17 547-563 325-341 (380)
240 PF08726 EFhand_Ca_insen: Ca2+ 31.4 17 0.00036 30.6 0.1 61 168-231 4-65 (69)
241 MTH00016 CYTB cytochrome b; Va 31.0 5.5E+02 0.012 29.1 12.1 36 490-526 270-310 (378)
242 KOG0042 Glycerol-3-phosphate d 30.8 23 0.0005 41.3 1.1 50 221-270 607-656 (680)
243 PF14145 YrhK: YrhK-like prote 30.5 78 0.0017 25.7 3.9 39 558-597 18-56 (59)
244 MTH00022 CYTB cytochrome b; Va 28.9 7.9E+02 0.017 27.8 12.9 37 490-527 268-309 (379)
245 KOG2871 Uncharacterized conser 28.2 48 0.001 36.7 2.9 65 240-311 306-370 (449)
246 MTH00156 CYTB cytochrome b; Pr 27.7 9.1E+02 0.02 27.1 15.3 37 490-527 259-300 (356)
247 KOG4004 Matricellular protein 27.5 33 0.00071 34.7 1.4 30 171-200 223-252 (259)
248 TIGR01848 PHA_reg_PhaR polyhyd 26.6 1.6E+02 0.0035 26.9 5.5 68 250-319 10-81 (107)
249 PF04876 Tenui_NCP: Tenuivirus 26.3 2.1E+02 0.0046 27.7 6.4 36 282-320 130-165 (175)
250 cd03035 ArsC_Yffb Arsenate Red 26.3 65 0.0014 29.3 3.1 31 292-322 60-90 (105)
251 PF00404 Dockerin_1: Dockerin 26.0 53 0.0011 21.0 1.6 16 253-268 1-16 (21)
252 MTH00033 CYTB cytochrome b; Pr 25.8 5.6E+02 0.012 29.1 11.0 37 490-527 268-309 (383)
253 PF13706 PepSY_TM_3: PepSY-ass 25.1 76 0.0016 23.1 2.6 18 442-459 4-21 (37)
254 PF08414 NADPH_Ox: Respiratory 24.9 1.5E+02 0.0033 26.8 5.0 66 243-318 30-95 (100)
255 MTH00131 CYTB cytochrome b; Pr 24.5 1.1E+03 0.023 26.8 13.7 36 490-526 269-309 (380)
256 KOG1265 Phospholipase C [Lipid 24.3 3.9E+02 0.0085 33.3 9.6 129 181-316 159-300 (1189)
257 PF03960 ArsC: ArsC family; I 24.2 77 0.0017 28.8 3.2 66 249-322 23-89 (110)
258 KOG3866 DNA-binding protein of 22.6 58 0.0013 35.1 2.2 22 175-196 249-270 (442)
259 PF00667 FAD_binding_1: FAD bi 22.3 1.7E+02 0.0037 30.1 5.8 42 599-640 7-54 (219)
260 PF13172 PepSY_TM_1: PepSY-ass 21.9 1.2E+02 0.0027 21.4 3.2 24 442-465 5-28 (34)
261 PF13301 DUF4079: Protein of u 21.9 4.9E+02 0.011 26.1 8.5 87 442-563 79-166 (175)
262 MTH00100 CYTB cytochrome b; Pr 21.2 1E+03 0.022 26.9 12.0 38 489-527 268-310 (379)
263 MTH00191 CYTB cytochrome b; Pr 20.2 1.3E+03 0.027 26.1 13.6 38 489-527 265-307 (365)
264 KOG4004 Matricellular protein 20.2 71 0.0015 32.4 2.1 55 249-313 193-248 (259)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-72 Score=656.40 Aligned_cols=492 Identities=52% Similarity=0.899 Sum_probs=434.2
Q ss_pred CCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCC
Q 003589 221 GDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDH 300 (808)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~ 300 (808)
++ |+++||. +.+.+.|++++.+|+++|+ ++|.++.+|+.+++..+...+....++++..++...++++.|.++
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 56 9999999 7888999999999999999 999999999999999777766677778899999999999999999
Q ss_pred CCceeHHHHHHHHHhCCccccCCCCCc-cccccccccCCCCCCCCCccccccchhhhhcccchhhhhHHHHHHHHHHHHH
Q 003589 301 LGCIMIDNLEMLLLQAPAQSVKGGESR-NLSHMLSQKLKPTQFDNPIRRCCDSTMYFLLDNWQRVWVMAQWIGVMAGLFT 379 (808)
Q Consensus 301 dG~Is~eEF~~ll~~~p~~~~~~~~~~-~ls~~ls~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~ 379 (808)
.|++.++++..++.+.|.......... .++..+++.++|.. ..+..+++++...|++++|++.+.+++|++++++||.
T Consensus 75 ~~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~ 153 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFT 153 (646)
T ss_pred cceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHH
Confidence 999999999999999987643211111 45667777777655 5566778888889999999999999999999999999
Q ss_pred HHhhccccchhhhhhccceeccccchhhhhhhhHHHHHHhhhhhhhhcccccccCccccCcchhhHHHHHHHHHHHHHHH
Q 003589 380 YKYIQYKNRAAFEVMGHCVCMAKGAAETLKFNMALILLPVCRNTITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGI 459 (808)
Q Consensus 380 ~~~~~y~~~~~~~~~g~~~~~a~g~a~~l~~n~~lill~~~Rn~l~~L~~~~~l~~~vp~d~~~~fHk~ig~~~~~~~~l 459 (808)
|+|.+|...+++++||+|+++++++|.++++||+++++|+|||.++||+..+.+...+|+|+++.||+.+|..+..++.+
T Consensus 154 ~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~ 233 (646)
T KOG0039|consen 154 WRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILL 233 (646)
T ss_pred HHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999999999999995555766799999999999999999999999
Q ss_pred HHHhhhccccceeeecCccccC-CCCcccCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCccccc
Q 003589 460 HAISHLACDFPRLINASEEKYE-PMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKL 538 (808)
Q Consensus 460 H~i~~l~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~ 538 (808)
|.++|.+|.++.++|+....+. .+..+++ ++.|+++..++.++||++++++|.+|+++|+++|||+
T Consensus 234 H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~----------- 300 (646)
T KOG0039|consen 234 HIWLHLVNFFPFLVHGLEYTISLASELFFL--PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRR----------- 300 (646)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhccc--chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHH-----------
Confidence 9999999999998887643331 2223333 5668889999999999999999999999999999998
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHhhccceeEEEEEEEEecCCEEEE
Q 003589 539 TGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLAL 618 (808)
Q Consensus 539 ~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~drl~R~~r~~~~~~~i~~v~~l~~~v~~l 618 (808)
.||+|||+||+++++|+++++||...+.. .+|+|+++|+++|++||+.|..|+ ..++++.++..+|+|++++
T Consensus 301 -~~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~L 372 (646)
T KOG0039|consen 301 -FYEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLEL 372 (646)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEEE
Confidence 69999999999999999999999865443 689999999999999999999998 5789999999999999999
Q ss_pred EEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEcCCccHHHHHHhhhccCCCCCCCcccccccCC
Q 003589 619 HMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGH 698 (808)
Q Consensus 619 ~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~ 698 (808)
++++|++++|+||||++|+||..+.+|||||||+|+|+++++++|||+.||||++|++.++..++++..+.. .
T Consensus 373 ~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~~-------~ 445 (646)
T KOG0039|consen 373 IMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDKS-------Y 445 (646)
T ss_pred EEeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhccccccccc-------c
Confidence 999999999999999999999999999999999999999999999999999999999998754433222110 1
Q ss_pred CCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcccc
Q 003589 699 NNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI 748 (808)
Q Consensus 699 ~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~ 748 (808)
..+++.||||||.+.+++.++++++|||||+|+||++|++++++++.+..
T Consensus 446 ~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~ 495 (646)
T KOG0039|consen 446 PFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLG 495 (646)
T ss_pred cCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCC
Confidence 25899999999999999999999999999999999999999999886544
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=1.1e-46 Score=438.91 Aligned_cols=315 Identities=25% Similarity=0.434 Sum_probs=249.8
Q ss_pred eeccccchhhhhhhhHHHHHHhhhh-hhhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecC
Q 003589 398 VCMAKGAAETLKFNMALILLPVCRN-TITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINAS 476 (808)
Q Consensus 398 ~~~a~g~a~~l~~n~~lill~~~Rn-~l~~L~~~~~l~~~vp~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~ 476 (808)
..++.++|.+...||++++||++|| .+.|+++ ++|++++.||||+|+++++++++|+++++.. + +.
T Consensus 150 ~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG-------~s~e~~i~yHRWlGri~~~la~iH~i~y~i~-~-----~~ 216 (699)
T PLN02631 150 RAFGLRIGYVGHICWAFLFFPVTRASTILPLVG-------LTSESSIKYHIWLGHVSNFLFLVHTVVFLIY-W-----AM 216 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----Hh
Confidence 3478889999999999999999997 4799964 5899999999999999999999999999842 1 11
Q ss_pred ccccCCCCcccCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCcccccccchHHHHHHHHHHHHHH
Q 003589 477 EEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYT 556 (808)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~v 556 (808)
.+.+.. .+... ..| ..+++|+++++++++++++|+++|||+ .||+|+++|++++++++
T Consensus 217 ~~~~~~---~~~w~-~~~------~~~~~GviA~v~~~lm~~~Sl~~~RRr------------~YE~F~~~Hillaifiv 274 (699)
T PLN02631 217 INKLME---TFAWN-PTY------VPNLAGTIAMVIGIAMWVTSLPSFRRK------------KFELFFYTHHLYGLYIV 274 (699)
T ss_pred hchhhh---hhhcc-ccc------chHHHHHHHHHHHHHHHHhccHHHHhh------------hhhHHHHHHHHHHHHHH
Confidence 111110 00000 111 235789999999999999999999998 69999999999988666
Q ss_pred HHHHHhhhhhhccccccceeeeh-hhHHHHHHHHHHHHHHhhccceeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEE
Q 003589 557 LLIVHGQYLYLTKKWYKKTTWMY-LAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMF 635 (808)
Q Consensus 557 ll~~H~~~~~~~~~w~~~~~w~y-~~~~~~l~~~drl~R~~r~~~~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~ 635 (808)
++++|.. ..|.| +++++++|++||++|.+|... ..++++++.++++++++++++|++++|+||||++
T Consensus 275 ~~~~H~g-----------~~w~~~~~~~ialw~~DR~lR~~r~~~-~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvf 342 (699)
T PLN02631 275 FYVIHVG-----------DSWFCMILPNIFLFFIDRYLRFLQSTK-RSRLVSARILPSDNLELTFSKTPGLHYTPTSILF 342 (699)
T ss_pred heEEecC-----------CchHHHHHHHHHHHHHHHHHHHHHHhc-eEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEE
Confidence 6778842 12433 345678999999999998764 4788889999999999999988889999999999
Q ss_pred EEeccCCCCeeeeeEeeecCC--CCeEEEEEEEcCCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCC
Q 003589 636 VNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPA 713 (808)
Q Consensus 636 l~~p~~~~~~~hPFSIas~p~--~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~ 713 (808)
|++|..+.+|+|||||+|.|+ ++.++++||..|+||++|.+.++. .| .+.++.++||||.+.
T Consensus 343 L~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~------~g----------~~i~V~VeGPYG~~~ 406 (699)
T PLN02631 343 LHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSS------SI----------DSLEVSTEGPYGPNS 406 (699)
T ss_pred EEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhc------CC----------CeeEEEEECCCCCCC
Confidence 999998889999999999984 578999999999999999886532 11 135899999999876
Q ss_pred CCCCCCCeEEEEEecccHHHHHHHHHHHHHhcccc-----c------------hHHHHHHHH-------hhhcCCCEEEE
Q 003589 714 QDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-----E------------EEEENDLEN-------GRDTGVNTTII 769 (808)
Q Consensus 714 ~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~-----~------------~~~~~eL~~-------l~~~~~~~~i~ 769 (808)
.+..+++++|+||||+||||++|++++++++..+. + ..+.+||.. +.+.+.+..+|
T Consensus 407 ~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~ni~i~iy 486 (699)
T PLN02631 407 FDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRLNLRIEAY 486 (699)
T ss_pred CCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcCceEEEEE
Confidence 55677899999999999999999999998653211 1 126788875 34345568889
Q ss_pred EEcCCC
Q 003589 770 IIDNNY 775 (808)
Q Consensus 770 vt~~~~ 775 (808)
+|+++.
T Consensus 487 VTR~~~ 492 (699)
T PLN02631 487 ITREDK 492 (699)
T ss_pred EcCCCC
Confidence 998643
No 3
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=4.8e-45 Score=426.20 Aligned_cols=333 Identities=21% Similarity=0.364 Sum_probs=256.4
Q ss_pred eeccccchhhhhhhhHHHHHHhhhhh-hhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecC
Q 003589 398 VCMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINAS 476 (808)
Q Consensus 398 ~~~a~g~a~~l~~n~~lill~~~Rn~-l~~L~~~~~l~~~vp~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~ 476 (808)
..+|.++|.+..++|+++++|++||+ +.|++ ++|||+++.||||+|+++++++++|+++++... ..
T Consensus 167 ~~vg~R~Gila~~~lpll~l~~~Rnn~L~~lt-------G~s~e~f~~yHRWlGrii~ll~~lH~i~y~i~~------~~ 233 (702)
T PLN02292 167 DSIAVRLGLVGNICLAFLFYPVARGSSLLAAV-------GLTSESSIKYHIWLGHLVMTLFTSHGLCYIIYW------IS 233 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh
Confidence 44788899888999999999999974 78986 468999999999999999999999999998421 11
Q ss_pred ccccCCCCcccCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCcccccccchHHHHHHHHHHHHHH
Q 003589 477 EEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYT 556 (808)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~v 556 (808)
.+.+..+. .| ...+...++|+++++++.+|+++|++++||+ .||.|+++|++++++++
T Consensus 234 ~~~~~~~~---------~w-~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~------------~YE~F~~~HiL~~v~~v 291 (702)
T PLN02292 234 MNQVSQML---------EW-DRTGVSNLAGEIALVAGLVMWATTYPKIRRR------------FFEVFFYTHYLYIVFML 291 (702)
T ss_pred cCchhhhh---------hc-cccchHHHHHHHHHHHHHHHHHHhhHHHHhc------------ccHhHHHHHHHHHHHHe
Confidence 11111110 11 1223456899999999999999999999998 69999999999988777
Q ss_pred HHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHhhccceeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEE
Q 003589 557 LLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFV 636 (808)
Q Consensus 557 ll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~drl~R~~r~~~~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l 636 (808)
++++|.... | +.|+++++++|++||++|.++.. ..+++++++.++++++++++++|+.++|+||||+++
T Consensus 292 ~~~~H~~~~-----~-----~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL 360 (702)
T PLN02292 292 FFVFHVGIS-----F-----ALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFV 360 (702)
T ss_pred eeehhhhhH-----H-----HHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEE
Confidence 778896421 1 12334556799999999999874 688999999999999999999988889999999999
Q ss_pred EeccCCCCeeeeeEeeecCC--CCeEEEEEEEcCCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCC
Q 003589 637 NCAAVSPFEWHPFSITSAPD--DDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQ 714 (808)
Q Consensus 637 ~~p~~~~~~~hPFSIas~p~--~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~ 714 (808)
++|..+.+++|||||+|+|. +++++++||..|+||++|.+.++. |+. ....+|.|+||||.+..
T Consensus 361 ~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~-------gd~-------i~~~~V~VeGPYG~~~~ 426 (702)
T PLN02292 361 NIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS-------SDQ-------IDRLAVSVEGPYGPAST 426 (702)
T ss_pred EEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC-------CCc-------cccceEEEECCccCCcc
Confidence 99988889999999999873 678999999999999999887532 210 01357999999999875
Q ss_pred CCCCCCeEEEEEecccHHHHHHHHHHHHHhccc-----cc-----------hH-----HHHHHH---Hhhh-cCCCEEEE
Q 003589 715 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-----IE-----------EE-----EENDLE---NGRD-TGVNTTII 769 (808)
Q Consensus 715 ~~~~~~~vllIagGiGITP~lsil~~l~~~~~~-----~~-----------~~-----~~~eL~---~l~~-~~~~~~i~ 769 (808)
+...++++++||||+||||++|++++++++..+ .+ .. +.+|+. ++++ .+.+..+|
T Consensus 427 ~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iy 506 (702)
T PLN02292 427 DFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAF 506 (702)
T ss_pred ccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEE
Confidence 566789999999999999999999999875321 11 01 333332 3332 34558899
Q ss_pred EEcCCCCCCccccccccccCHHHHHH
Q 003589 770 IIDNNYEPFFFWTQKKGPIQDKKSIL 795 (808)
Q Consensus 770 vt~~~~~~~~~w~g~~G~v~~~~~~~ 795 (808)
+|++++++ -++-.| ++++.+.
T Consensus 507 vTr~~~~~---~~~~~~--~~~~~~~ 527 (702)
T PLN02292 507 VTREKEAG---VKESTG--NMNIIKT 527 (702)
T ss_pred EeCCCCCC---Cccccc--chhhhhh
Confidence 99876654 122344 6655543
No 4
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=1e-43 Score=416.21 Aligned_cols=292 Identities=27% Similarity=0.502 Sum_probs=232.0
Q ss_pred eeccccchhhhhhhhHHHHHHhhhhh-hhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecC
Q 003589 398 VCMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINAS 476 (808)
Q Consensus 398 ~~~a~g~a~~l~~n~~lill~~~Rn~-l~~L~~~~~l~~~vp~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~ 476 (808)
..+|++.|.+...||+++++|++||+ +.|+. ++|||+++.||||+|+++++++++|+++|+... ..
T Consensus 153 ~~va~R~G~la~~~Lpll~llv~Rnn~l~~lt-------Gis~e~~i~fHrWlGr~~~llallH~i~~~i~w------~~ 219 (722)
T PLN02844 153 LRVATRFGLLAEACLALLLLPVLRGLALFRLL-------GIQFEASVRYHVWLGTSMIFFATVHGASTLFIW------GI 219 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHhh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh
Confidence 45788889988999999999999985 56664 579999999999999999999999999887311 10
Q ss_pred ccccCCCCcccCCCCcchhhh-hhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCcccccccchHHHHHHHHHHHHH
Q 003589 477 EEKYEPMEPYFGDQPKNYWHF-VKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVY 555 (808)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~ 555 (808)
.+... ..+|.+ ..+...++|+++++++++++++|++++||+ .||.||++|+++++++
T Consensus 220 ~~~~~----------~~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~------------~YElF~~~H~L~ivfl 277 (722)
T PLN02844 220 SHHIQ----------DEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRK------------RFEIFYYTHHLYIVFL 277 (722)
T ss_pred hcchh----------hhhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhh------------hhHHHHHHHHHHHHHH
Confidence 00000 001111 122234789999999999999999999998 6999999999998877
Q ss_pred HHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHhhccceeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEE
Q 003589 556 TLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMF 635 (808)
Q Consensus 556 vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~drl~R~~r~~~~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~ 635 (808)
+++++|... ..|.|+++++++|++||++|.++... ...+++++.++++++++++++|..++|+||||++
T Consensus 278 v~~~~H~~~----------~~~~~v~~~i~L~~~DRllR~~~s~~-~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~ 346 (722)
T PLN02844 278 IFFLFHAGD----------RHFYMVFPGIFLFGLDKLLRIVQSRP-ETCILSARLFPCKAIELVLPKDPGLKYAPTSVIF 346 (722)
T ss_pred HhhhHhhcC----------cchhhhHHHHHHHHHHHHhheEEEee-eEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEE
Confidence 888999741 11235556788999999999887653 3445677888999999999998889999999999
Q ss_pred EEeccCCCCeeeeeEeeecC--CCCeEEEEEEEcCCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCC
Q 003589 636 VNCAAVSPFEWHPFSITSAP--DDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPA 713 (808)
Q Consensus 636 l~~p~~~~~~~hPFSIas~p--~~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~ 713 (808)
|++|..+.+++|||||+|.| +++.++++||..|+||++|.+.++...+ +|.. .....++.|+||||.+.
T Consensus 347 L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~---~g~~------~~~~~~v~VeGPYG~~s 417 (722)
T PLN02844 347 MKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELD---SETN------QMNCIPVAIEGPYGPAS 417 (722)
T ss_pred EEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhcc---CCCC------cccceEEEEECCccCCC
Confidence 99999888999999999987 4678999999999999999887643211 1100 00124899999999987
Q ss_pred CCCCCCCeEEEEEecccHHHHHHHHHHHHHh
Q 003589 714 QDYKEYEVVLLVGLGIGATPMISIVKDIVNN 744 (808)
Q Consensus 714 ~~~~~~~~vllIagGiGITP~lsil~~l~~~ 744 (808)
.+...+++++|||||+||||++|+++++.++
T Consensus 418 ~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~ 448 (722)
T PLN02844 418 VDFLRYDSLLLVAGGIGITPFLSILKEIASQ 448 (722)
T ss_pred CCccCCCeEEEEEcCcCHHHHHHHHHHHHhc
Confidence 6666789999999999999999999999864
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-33 Score=292.83 Aligned_cols=316 Identities=19% Similarity=0.293 Sum_probs=217.5
Q ss_pred hhhhHHHHHHhhhhhhhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCccccCC--CCcc
Q 003589 409 KFNMALILLPVCRNTITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEP--MEPY 486 (808)
Q Consensus 409 ~~n~~lill~~~Rn~l~~L~~~~~l~~~vp~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~--~~~~ 486 (808)
...|+++.+.+.| +.|++.|+ -+.|+.+.+|||.|+.++++.+.|-+....-+ |.....-.+.+ ++.+
T Consensus 49 L~~msl~~~LA~R--~~~iE~~~-----~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~---w~~~~~l~~k~a~v~~~ 118 (438)
T COG4097 49 LALMSLIFLLATR--LPLIEAWF-----NGLDKIYRFHKYTSILAILLLLAHNFILFIGN---WLTLQLLNFKPAPVKPS 118 (438)
T ss_pred HHHHHHHHHHHhc--hHHHhhhh-----hhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCc---chhcccccccccccchh
Confidence 3467888888888 55777763 36899999999999999999999998855321 11110001111 1111
Q ss_pred cCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCcccccccchHHHHHHHHHHHHHHHHHHHhhhhh
Q 003589 487 FGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLY 566 (808)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~ 566 (808)
. ...|...+....+..++..+++.+. ..|. .+.||.|.+.|.+++++|++..+|.....
T Consensus 119 l----~~~~~s~~elG~~~~yi~~~lllV~----~l~~-------------~i~Ye~WR~~H~lm~vvYilg~~H~~~l~ 177 (438)
T COG4097 119 L----AGMWRSAKELGEWSAYIFIGLLLVW----RLWL-------------NIGYENWRIAHRLMAVVYILGLLHSYGLL 177 (438)
T ss_pred h----hhhhHHHHHHHHHHHHHHHHHHHHH----HHHH-------------hcCchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 0112222222233333333332221 1121 23699999999999999999999987543
Q ss_pred hcccccccee-eehh---hHHHHHHHHHHHHHHhhccceeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCC
Q 003589 567 LTKKWYKKTT-WMYL---AIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS 642 (808)
Q Consensus 567 ~~~~w~~~~~-w~y~---~~~~~l~~~drl~R~~r~~~~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~ 642 (808)
-...|..+.. |.-. +++..++++.-..+..++..+.++|+.++..+.++++++.....++.|+||||.++.|+...
T Consensus 178 ~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~ 257 (438)
T COG4097 178 NYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEE 257 (438)
T ss_pred chhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEecccc
Confidence 2233433333 3322 12222333334445567777888999999999999888888777778999999999998753
Q ss_pred -CCeeeeeEeeecCCCCeEEEEEEEcCCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCe
Q 003589 643 -PFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEV 721 (808)
Q Consensus 643 -~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~ 721 (808)
....|||||+++.+..+++|.||..||+|+.|++.+ ++ |.++.||||||.+..+- .-.+
T Consensus 258 ~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnL-------k~------------G~k~~vdGPYG~F~~~~-g~~~ 317 (438)
T COG4097 258 FRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNL-------KV------------GTKLEVDGPYGKFDFER-GLNT 317 (438)
T ss_pred ccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhc-------cC------------CceEEEecCcceeeccc-CCcc
Confidence 356899999999877799999999999999998865 23 58999999999997532 2234
Q ss_pred EEEEEecccHHHHHHHHHHHHHhccccc------------hHHHHHHHHhhhcCCCEEEEEEcCCC
Q 003589 722 VLLVGLGIGATPMISIVKDIVNNMKAIE------------EEEENDLENGRDTGVNTTIIIIDNNY 775 (808)
Q Consensus 722 vllIagGiGITP~lsil~~l~~~~~~~~------------~~~~~eL~~l~~~~~~~~i~vt~~~~ 775 (808)
-|+|||||||||++|+++.+.....+.. ..+.+||++++++.+++++|+.+...
T Consensus 318 QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~ 383 (438)
T COG4097 318 QVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSK 383 (438)
T ss_pred cEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 8999999999999999999887322221 23778999999989999999965433
No 6
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.88 E-value=8.2e-22 Score=205.13 Aligned_cols=169 Identities=21% Similarity=0.337 Sum_probs=135.8
Q ss_pred EEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc--CCccHHHHHHhh
Q 003589 603 VSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVFS 679 (808)
Q Consensus 603 ~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~--g~~T~~L~~~~~ 679 (808)
++|++++.+++++++|+++.|..+.|+||||+.|.++.. .+|||||+|.|. ++.++|+||.. |.+|+.|.+.+
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l- 76 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEEL- 76 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhc-
Confidence 368889999999999999988788999999999999864 489999999986 68999999998 67888887643
Q ss_pred hccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc----------
Q 003589 680 EVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------- 749 (808)
Q Consensus 680 ~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------- 749 (808)
++ |++|.|.||||.+......++++||||||+||||++|++++++......+
T Consensus 77 ------~~------------G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~ 138 (224)
T cd06189 77 ------KE------------NGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTE 138 (224)
T ss_pred ------cC------------CCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCCh
Confidence 22 58999999999987644457899999999999999999999987642222
Q ss_pred --hHHHHHHHHhhhcCCCEEE-EEEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 --EEEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 --~~~~~eL~~l~~~~~~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+||.++.+++.+..+ ++.+.+.++ |.|.+|+|++.....+
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~~~ 185 (224)
T cd06189 139 EDLYLDELLEAWAEAHPNFTYVPVLSEPEEG---WQGRTGLVHEAVLEDF 185 (224)
T ss_pred hhccCHHHHHHHHHhCCCeEEEEEeCCCCcC---CccccccHHHHHHhhc
Confidence 1257888888877777443 345555556 8899999998776554
No 7
>PRK08051 fre FMN reductase; Validated
Probab=99.88 E-value=1.7e-21 Score=203.99 Aligned_cols=171 Identities=19% Similarity=0.272 Sum_probs=134.3
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCC--ccHHHHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGD--WTRQLRTV 677 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~--~T~~L~~~ 677 (808)
..++|.+++.++++++.|++..+..+.|+||||++|+++.. ..|||||+|.| +++.++|+||..++ .+..+...
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46789999999999999999987788999999999999753 57999999999 57889999999764 44444332
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc--------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-------- 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~-------- 749 (808)
+ + +|++|.|+||||.+.......+++||||||+||||++|+++++++.....+
T Consensus 80 l-------~------------~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~g~r 140 (232)
T PRK08051 80 I-------L------------KDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYWGGR 140 (232)
T ss_pred c-------C------------CCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEEEec
Confidence 2 2 358999999999987644456789999999999999999999987543222
Q ss_pred ----hHHHHHHHHhhhcCCCEEE-EEEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 ----EEEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 ----~~~~~eL~~l~~~~~~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+||.++++++.+..+ ++++.+++. |.|++|+|++.+.+.+
T Consensus 141 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~~l~~~~ 189 (232)
T PRK08051 141 EEDHLYDLDELEALALKHPNLHFVPVVEQPEEG---WQGKTGTVLTAVMQDF 189 (232)
T ss_pred cHHHhhhhHHHHHHHHHCCCcEEEEEeCCCCCC---cccceeeehHHHHhhc
Confidence 1267889898887767433 345555666 8999999998776544
No 8
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.87 E-value=3.4e-21 Score=202.00 Aligned_cols=173 Identities=21% Similarity=0.300 Sum_probs=135.3
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCC------cccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc--CCcc
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDR------FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWT 671 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~------~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~--g~~T 671 (808)
..++|++++.++++++.++++.|.+ +.|+||||+.|.+|+.. .+|||||+|.|. ++.++|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTD--TRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCc--cceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3578999999999999999998765 68999999999998543 689999999986 68999999987 6677
Q ss_pred HHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc--
Q 003589 672 RQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-- 749 (808)
Q Consensus 672 ~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~-- 749 (808)
..|.+.+ + .|+++.|.||||.+..+....++++|||||+||||++++++++.+.....+
T Consensus 80 ~~l~~~~-------~------------~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~ 140 (236)
T cd06210 80 TYLETRA-------K------------VGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEAR 140 (236)
T ss_pred hhhhhCc-------C------------CCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCCCceEE
Confidence 7776522 2 358999999999987544456789999999999999999999886532212
Q ss_pred ----------hHHHHHHHHhhhcCCCEEE-EEEcCCCCCCccccccccccCHHHHHHhh
Q 003589 750 ----------EEEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 750 ----------~~~~~eL~~l~~~~~~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
..+.+||.++++++++..+ ++++++.+. |.|..|++++.+...+.
T Consensus 141 l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~~~~g~~~~~l~~~l~ 196 (236)
T cd06210 141 LFFGVNTEAELFYLDELKRLADSLPNLTVRICVWRPGGE---WEGYRGTVVDALREDLA 196 (236)
T ss_pred EEEecCCHHHhhhHHHHHHHHHhCCCeEEEEEEcCCCCC---cCCccCcHHHHHHHhhc
Confidence 1267889988887777443 344444555 88999999887665553
No 9
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.87 E-value=2.2e-21 Score=199.79 Aligned_cols=168 Identities=29% Similarity=0.494 Sum_probs=126.4
Q ss_pred EEEEEec-CCEEEEEEEcCCCcccCCCCEEEEEeccC-CCCeeeeeEeeecCCC--CeEEEEEEEcCCccHHHHHHhhhc
Q 003589 606 QKVAVYP-GNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD--DYLSVHIRTLGDWTRQLRTVFSEV 681 (808)
Q Consensus 606 ~~v~~l~-~~v~~l~l~~p~~~~~~pGQyv~l~~p~~-~~~~~hPFSIas~p~~--~~l~l~Ir~~g~~T~~L~~~~~~~ 681 (808)
++++.++ ++++++++..|..+.|+||||++|++|.. +.+++|||||+|.|.+ +.++|+||..+|+|.++...+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999998888999999999999988 7789999999999975 899999999966666665544311
Q ss_pred cCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcc----ccc--------
Q 003589 682 CRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK----AIE-------- 749 (808)
Q Consensus 682 ~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~----~~~-------- 749 (808)
.+ . ..+.++.|+||||.+..+...++++||||||+||||++|++++++.+.. ..+
T Consensus 82 -~~--~----------~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r 148 (210)
T cd06186 82 -PG--G----------GVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVR 148 (210)
T ss_pred -cC--C----------CceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEEC
Confidence 00 0 1357899999999987446678999999999999999999999987641 111
Q ss_pred ---h--HHHHHHHH---hhhcCCCEEEEEEcCCCCCCccccccccccCHHHH
Q 003589 750 ---E--EEENDLEN---GRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKS 793 (808)
Q Consensus 750 ---~--~~~~eL~~---l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~ 793 (808)
. .+.+||.. +.... +..+|+|+ ++-||..+.+++...
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~-~~~i~~T~------v~~CGp~~~~~~~~~ 193 (210)
T cd06186 149 DREDLEWFLDELRAAQELEVDG-EIEIYVTR------VVVCGPPGLVDDVRN 193 (210)
T ss_pred CHHHhHHHHHHHHhhhhccCCc-eEEEEEee------EEEECchhhccHHHH
Confidence 1 25666653 22111 35777776 346787777766533
No 10
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.86 E-value=8.3e-21 Score=198.81 Aligned_cols=175 Identities=16% Similarity=0.224 Sum_probs=134.6
Q ss_pred ceeEEEEEEEEecCCEEEEEEEcCCC--cccCCCCEEEEEeccC-CCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHH
Q 003589 600 IKAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQ 673 (808)
Q Consensus 600 ~~~~~i~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~-~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~ 673 (808)
|..++|++++.+++++++++|+.|+. ..|+||||+.|+++.. +...+|||||+|.|.+ +.++|+||.. |..|..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHH
Confidence 45788999999999999999998876 7899999999999843 3346799999999854 5899999998 456777
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc----
Q 003589 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---- 749 (808)
Q Consensus 674 L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---- 749 (808)
|.+.+ + .|+.|.|.||||.+..+....++++|||||+||||++++++++++.....+
T Consensus 81 l~~~l-------~------------~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~ 141 (235)
T cd06217 81 LHDEV-------K------------VGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLL 141 (235)
T ss_pred HHhcC-------C------------CCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCCceEEEE
Confidence 65532 2 258999999999986543346789999999999999999999987643222
Q ss_pred --------hHHHHHHHHhhhcCCCEEEE--EEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 --------EEEENDLENGRDTGVNTTII--IIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 --------~~~~~eL~~l~~~~~~~~i~--vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+||.++.+++.+..++ ++++..+. |.+.+|+++++....+
T Consensus 142 ~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~---~~~~~g~~~~~~l~~~ 195 (235)
T cd06217 142 YSARTAEDVIFRDELEQLARRHPNLHVTEALTRAAPAD---WLGPAGRITADLIAEL 195 (235)
T ss_pred EecCCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCCCC---cCCcCcEeCHHHHHhh
Confidence 12678888888766664333 33332455 8899999998775543
No 11
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.86 E-value=8.5e-21 Score=198.01 Aligned_cols=169 Identities=20% Similarity=0.326 Sum_probs=133.1
Q ss_pred eEEEEEEEEecCCEEEEEEEcCC--CcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEc--CCccHHHHHH
Q 003589 602 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 677 (808)
Q Consensus 602 ~~~i~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~--g~~T~~L~~~ 677 (808)
.++|++++.+++++++|+++.|. .+.|+||||+.|++++.. .+|||||+|.|.++.++|+||.. |..|..|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57899999999999999999887 578999999999998643 58999999999778999999987 6678877653
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc--------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-------- 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~-------- 749 (808)
+ + .|+.+.|.||+|.+... ...++++|||||+||||++|++++++......+
T Consensus 81 l-------~------------~G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~~~r 140 (228)
T cd06209 81 A-------Q------------PGDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVT 140 (228)
T ss_pred c-------C------------CCCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEEecC
Confidence 2 2 35899999999998753 334789999999999999999999987642211
Q ss_pred ----hHHHHHHHHhhhcCCCEEEE-EEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 ----EEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 ----~~~~~eL~~l~~~~~~~~i~-vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+|+.++.+++++..++ +.+. .+. |.+.+|+|++.+....
T Consensus 141 ~~~~~~~~~~l~~l~~~~~~~~~~~~~s~-~~~---~~~~~g~v~~~~~~~~ 188 (228)
T cd06209 141 RDADLVELDRLEALAERLPGFSFRTVVAD-PDS---WHPRKGYVTDHLEAED 188 (228)
T ss_pred CHHHhccHHHHHHHHHhCCCeEEEEEEcC-CCc---cCCCcCCccHHHHHhh
Confidence 12678898888777774443 3332 334 7889999998766543
No 12
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.86 E-value=1.4e-20 Score=198.33 Aligned_cols=181 Identities=13% Similarity=0.194 Sum_probs=138.2
Q ss_pred HHHHHHHhh----ccceeEEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCCCCeeeeeEeeecCC--CCeEE
Q 003589 589 TERLIRALR----SSIKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLS 661 (808)
Q Consensus 589 ~drl~R~~r----~~~~~~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~--~~~l~ 661 (808)
+|+.+|+++ .....++|++++.+++++.++++..|.. ..|+||||+.|.++..+...+|||||+|.|. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 366667643 3446788999999999999999998765 4799999999999866656789999999986 78999
Q ss_pred EEEEEc--CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHH
Q 003589 662 VHIRTL--GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 739 (808)
Q Consensus 662 l~Ir~~--g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~ 739 (808)
|+||.. |.+|..|.+.+ + +|++|.|.||||.+..+...+++++|||||+||||++|+++
T Consensus 82 ~~ik~~~~G~~s~~l~~~~-------~------------~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~ 142 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHL-------A------------PGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLR 142 (243)
T ss_pred EEEEEcCCCcchhHHHhcC-------C------------CCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHH
Confidence 999999 88888886532 2 25899999999998754444789999999999999999999
Q ss_pred HHHHhcccc------------chHHHHHHHHhhhcCCCEEEE-EEcCCCCCCccccccccccCHHHHHHh
Q 003589 740 DIVNNMKAI------------EEEEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 740 ~l~~~~~~~------------~~~~~~eL~~l~~~~~~~~i~-vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
++.+..... +..+.+||.++.+++.+..++ +.+.+ +..|+++++....+
T Consensus 143 ~~~~~~~~~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~--------~~~g~~~~~~l~~~ 204 (243)
T cd06216 143 TLLARGPTADVVLLYYARTREDVIFADELRALAAQHPNLRLHLLYTRE--------ELDGRLSAAHLDAV 204 (243)
T ss_pred HHHhcCCCCCEEEEEEcCChhhhHHHHHHHHHHHhCCCeEEEEEEcCC--------ccCCCCCHHHHHHh
Confidence 998763111 123678898888776664433 23322 35678877655443
No 13
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.86 E-value=1.2e-20 Score=198.30 Aligned_cols=172 Identities=16% Similarity=0.249 Sum_probs=134.1
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCCc--ccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc--CCccHHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDRF--RYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLR 675 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~~--~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~--g~~T~~L~ 675 (808)
..++|++++.+++++..++++.|.+. .|+||||+.|++|... ..|||||+|.|. ++.++|+||.. |..|..|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 46789999999999999999987764 8999999999998643 679999999985 67899999998 77788875
Q ss_pred HHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc------
Q 003589 676 TVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------ 749 (808)
Q Consensus 676 ~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~------ 749 (808)
+.+ + .|++|.|.||+|.+.......+++||||||+||||++|++++++++.....
T Consensus 85 ~~l-------~------------~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~ 145 (238)
T cd06211 85 KQL-------K------------EGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFG 145 (238)
T ss_pred hcC-------C------------CCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 432 2 258999999999987643445789999999999999999999987643211
Q ss_pred ------hHHHHHHHHhhhcCCCEEE-EEEc-C-CCCCCccccccccccCHHHHHHh
Q 003589 750 ------EEEENDLENGRDTGVNTTI-IIID-N-NYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 ------~~~~~eL~~l~~~~~~~~i-~vt~-~-~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+|+.++++++++..+ ++.+ . +.+. |.|.+|+|++.+...+
T Consensus 146 ~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~v~~~l~~~~ 198 (238)
T cd06211 146 ARTRAELYYLDEFEALEKDHPNFKYVPALSREPPESN---WKGFTGFVHDAAKKHF 198 (238)
T ss_pred cCChhhhccHHHHHHHHHhCCCeEEEEEECCCCCCcC---cccccCcHHHHHHHhc
Confidence 1267889888877777433 3333 3 2345 8999999988655544
No 14
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.86 E-value=1.4e-20 Score=196.55 Aligned_cols=172 Identities=21% Similarity=0.341 Sum_probs=133.0
Q ss_pred EEEEEEEEecCCEEEEEEEcCCC--cccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHHHHHH
Q 003589 603 VSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTV 677 (808)
Q Consensus 603 ~~i~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~L~~~ 677 (808)
++|++++.+++++..++|+.|.. +.|+||||+.|+++..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhc
Confidence 36788999999999999999876 78999999999998666556899999999864 5699999998 7788777543
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc--------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-------- 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~-------- 749 (808)
+ + .|+.+.|.||||.+.......+++||||||+||||++++++++.+......
T Consensus 81 ~-------~------------~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r 141 (231)
T cd06215 81 L-------K------------VGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSAR 141 (231)
T ss_pred C-------C------------CCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEecC
Confidence 2 2 258999999999987543346899999999999999999999987543221
Q ss_pred ----hHHHHHHHHhhhcCCCE--EEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 ----EEEENDLENGRDTGVNT--TIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 ----~~~~~eL~~l~~~~~~~--~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+||.++.+++.+. .+++++.+... |.+..|+++++....+
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~l~~~ 191 (231)
T cd06215 142 SPADIIFADELEELARRHPNFRLHLILEQPAPGA---WGGYRGRLNAELLALL 191 (231)
T ss_pred ChhhhhHHHHHHHHHHHCCCeEEEEEEccCCCCc---ccccCCcCCHHHHHHh
Confidence 12678888888766663 33344333323 7899999998666544
No 15
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.86 E-value=1.8e-20 Score=195.87 Aligned_cols=172 Identities=16% Similarity=0.215 Sum_probs=132.7
Q ss_pred EEEEEEEecCCEEEEEEEcCCC--cccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEc--CCccHHHHHHhh
Q 003589 604 SIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFS 679 (808)
Q Consensus 604 ~i~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~--g~~T~~L~~~~~ 679 (808)
+|++++.+++++.++++..|.. +.|+||||+.|+++..+...+|||||+|.|.++.++|+||.. |.+|..|.+.+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~- 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI- 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC-
Confidence 6788999999999999997764 589999999999976555578999999998878999999998 66788776432
Q ss_pred hccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc----------
Q 003589 680 EVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------- 749 (808)
Q Consensus 680 ~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------- 749 (808)
+ +|+++.|.||||.+..+....+++|||||||||||++||++++.+......
T Consensus 81 ------~------------~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~ 142 (231)
T cd06191 81 ------Q------------PGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTP 142 (231)
T ss_pred ------C------------CCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCH
Confidence 2 358999999999987544456789999999999999999999986532222
Q ss_pred --hHHHHHHHHhhhcCCCEE--EEEEcCC-CCCCccccccccccCHHHHHHhh
Q 003589 750 --EEEENDLENGRDTGVNTT--IIIIDNN-YEPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 750 --~~~~~eL~~l~~~~~~~~--i~vt~~~-~~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
..+.+||.++++++.+.. +++++++ .+. |.+.+|++.+++...+.
T Consensus 143 ~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~l~~~~~ 192 (231)
T cd06191 143 ADMIFAQELRELADKPQRLRLLCIFTRETLDSD---LLHGRIDGEQSLGAALI 192 (231)
T ss_pred HHHhHHHHHHHHHHhCCCeEEEEEECCCCCCcc---ccCCcccccHHHHHHhC
Confidence 126788888887666633 3333332 334 88888988877665443
No 16
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.86 E-value=1.3e-20 Score=197.25 Aligned_cols=172 Identities=17% Similarity=0.290 Sum_probs=132.8
Q ss_pred eEEEEEEEEecCCEEEEEEEcCC--CcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHHHHH
Q 003589 602 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRT 676 (808)
Q Consensus 602 ~~~i~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~L~~ 676 (808)
.++|.+++.+++++++++|..+. .+.|+||||+.|++|+.. .+|||||+|.|.+ +.++|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 56899999999999999998654 578999999999998644 7899999999865 8999999998 566777765
Q ss_pred HhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc-------
Q 003589 677 VFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------- 749 (808)
Q Consensus 677 ~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~------- 749 (808)
.+ + .|+++.|.||||.+......++++||||||+||||++++++++.+......
T Consensus 80 ~l-------~------------~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~ 140 (232)
T cd06212 80 GL-------A------------VGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGA 140 (232)
T ss_pred cC-------C------------CCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEec
Confidence 32 2 358999999999987644457899999999999999999999987643222
Q ss_pred -----hHHHHHHHHhhhcCCCEEE-EEEc-CCC-CCCccccccccccCHHHHHHhh
Q 003589 750 -----EEEENDLENGRDTGVNTTI-IIID-NNY-EPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 750 -----~~~~~eL~~l~~~~~~~~i-~vt~-~~~-~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
..+.+||.++.+...+..+ ++.+ +.. +. |.+..|++++...+.+.
T Consensus 141 r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~~~~~~~~~~~ 193 (232)
T cd06212 141 RTARDLFYLEEIAALGEKIPDFTFIPALSESPDDEG---WSGETGLVTEVVQRNEA 193 (232)
T ss_pred cchHHhccHHHHHHHHHhCCCEEEEEEECCCCCCCC---CcCCcccHHHHHHhhcc
Confidence 1267888888876666432 3333 322 45 88899999886655443
No 17
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.85 E-value=1.1e-20 Score=196.47 Aligned_cols=169 Identities=18% Similarity=0.304 Sum_probs=132.4
Q ss_pred EEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHHHHHHhhhc
Q 003589 605 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 681 (808)
Q Consensus 605 i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~ 681 (808)
|++++.++++++++++..|..+.|+||||+.|.+|..+. .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l--- 76 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDEL--- 76 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcC---
Confidence 356788999999999998888889999999999986543 6899999999865 7899999998 77888887632
Q ss_pred cCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc------------
Q 003589 682 CRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------------ 749 (808)
Q Consensus 682 ~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~------------ 749 (808)
+ .|+.|.|.||||.+......++++||||||+||||++|+++++..+....+
T Consensus 77 ----~------------~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~ 140 (224)
T cd06187 77 ----K------------VGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERD 140 (224)
T ss_pred ----c------------cCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhh
Confidence 2 258999999999987644447889999999999999999999987542222
Q ss_pred hHHHHHHHHhhhcCCCEEE-EEEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 EEEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 ~~~~~eL~~l~~~~~~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+||.++.+.+.+..+ ++.+.+.+. |.|.+|++++.+....
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~ 185 (224)
T cd06187 141 LYDLEGLLALAARHPWLRVVPVVSHEEGA---WTGRRGLVTDVVGRDG 185 (224)
T ss_pred hcChHHHHHHHHhCCCeEEEEEeCCCCCc---cCCCcccHHHHHHHhc
Confidence 1256888888877666433 334444455 8899999988776544
No 18
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.85 E-value=1.1e-20 Score=197.68 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=130.3
Q ss_pred EEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHHHHHHhhhcc
Q 003589 606 QKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVC 682 (808)
Q Consensus 606 ~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~ 682 (808)
++++.++++++.|+|+.+..+.|+||||+.|++|..+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~---- 75 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNL---- 75 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcC----
Confidence 4678899999999999888888999999999998654 6799999999865 7899999987 77888876532
Q ss_pred CCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhc--cccc-----------
Q 003589 683 RPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--KAIE----------- 749 (808)
Q Consensus 683 ~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~--~~~~----------- 749 (808)
+ .++++.|.||||.+.......+++||||||+||||++|+++++.... ...+
T Consensus 76 ---~------------~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~ 140 (232)
T cd06190 76 ---E------------PGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPS 140 (232)
T ss_pred ---C------------CCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHH
Confidence 1 25789999999998754445679999999999999999999998752 1111
Q ss_pred -hHHHHHHHHhhhcCCCEEEE-EEcCC-CCCCccccccccccCHHHHHHhh
Q 003589 750 -EEEENDLENGRDTGVNTTII-IIDNN-YEPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 750 -~~~~~eL~~l~~~~~~~~i~-vt~~~-~~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
..+.+||.++.+.+.++.++ +.+++ ......|.+++|++++.+.+.+.
T Consensus 141 ~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~ 191 (232)
T cd06190 141 DLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLG 191 (232)
T ss_pred HHhhHHHHHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhcc
Confidence 12678898888776664443 33332 22101289999999986655543
No 19
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.85 E-value=3.5e-20 Score=195.74 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=134.6
Q ss_pred cceeEEEEEEEEecCCEEEEEEEcCCC---cccCCCCEEEEEeccCC--CCeeeeeEeeecCCCCeEEEEEEEc--CCcc
Q 003589 599 SIKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDWT 671 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~~--~~~~hPFSIas~p~~~~l~l~Ir~~--g~~T 671 (808)
.++.++|++++.+++++.+|+|+.+.. +.|+||||+.|.++..+ ...+|||||+|.|.++.++|+||.. |..|
T Consensus 5 ~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s 84 (247)
T cd06184 5 GFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVS 84 (247)
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcch
Confidence 456789999999999999999998753 68999999999997543 4588999999999877999999998 7888
Q ss_pred HHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc--
Q 003589 672 RQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-- 749 (808)
Q Consensus 672 ~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~-- 749 (808)
+.|.+.+ + .|+++.|.||||.+..+...+++++|||||+||||++++++++.++.....
T Consensus 85 ~~l~~~~-------~------------~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~i~ 145 (247)
T cd06184 85 NYLHDNV-------K------------VGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPGRPVT 145 (247)
T ss_pred HHHHhcC-------C------------CCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCCCcEE
Confidence 8776532 2 358999999999987644467899999999999999999999987522111
Q ss_pred ----------hHHHHHHHHhhhcCCCEEEE-EEcCCCCC-CccccccccccCHHHHH
Q 003589 750 ----------EEEENDLENGRDTGVNTTII-IIDNNYEP-FFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 750 ----------~~~~~eL~~l~~~~~~~~i~-vt~~~~~~-~~~w~g~~G~v~~~~~~ 794 (808)
..+.+||.++.+.+.+..++ +++++.+. ...|.+..|+++.+...
T Consensus 146 l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~ 202 (247)
T cd06184 146 FIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLR 202 (247)
T ss_pred EEEEcCchhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHh
Confidence 13678888888765664333 33333222 00135778999876544
No 20
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.85 E-value=1.2e-20 Score=208.56 Aligned_cols=173 Identities=20% Similarity=0.311 Sum_probs=133.6
Q ss_pred cceeEEEEEEEEecCCEEEEEEEcCC--CcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHH
Q 003589 599 SIKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQ 673 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~ 673 (808)
....++|++++.++++++.|+|..|. .+.|+||||+.|.+|.. ++|||||+|.|.+ +.++|+||.. |.+|..
T Consensus 101 ~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 177 (339)
T PRK07609 101 KKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDH 177 (339)
T ss_pred eEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHH
Confidence 34578999999999999999999773 57899999999999853 5899999999965 7999999987 666777
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc----
Q 003589 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---- 749 (808)
Q Consensus 674 L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---- 749 (808)
|.+.+ + .|+.+.|+||||.+..+....+++|||||||||||++||++++++......
T Consensus 178 l~~~l-------~------------~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~l~ 238 (339)
T PRK07609 178 VFGAL-------K------------ERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVTLY 238 (339)
T ss_pred HHHhc-------c------------CCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEEEE
Confidence 76543 2 258999999999998654466789999999999999999999987543222
Q ss_pred -------hHH-HHHHHHhhhcCCCEEE-EEEcC--CCCCCccccccccccCHHHHHHh
Q 003589 750 -------EEE-ENDLENGRDTGVNTTI-IIIDN--NYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 -------~~~-~~eL~~l~~~~~~~~i-~vt~~--~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+ .+++.++.+++++..+ ++.+. +++. |.|++|+|++.+...+
T Consensus 239 ~g~r~~~dl~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~---~~g~~G~v~~~~~~~~ 293 (339)
T PRK07609 239 WGARRPEDLYLSALAEQWAEELPNFRYVPVVSDALDDDA---WTGRTGFVHQAVLEDF 293 (339)
T ss_pred EecCChHHhccHHHHHHHHHhCCCeEEEEEecCCCCCCC---ccCccCcHHHHHHhhc
Confidence 123 4455677777777443 33343 3455 8999999998876554
No 21
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.85 E-value=1.7e-20 Score=197.44 Aligned_cols=166 Identities=18% Similarity=0.264 Sum_probs=129.7
Q ss_pred EEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccC-CCCeeeeeEeeecCCCCeEEEEEEEc--CCccHHHHHHhhh
Q 003589 604 SIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFSE 680 (808)
Q Consensus 604 ~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~-~~~~~hPFSIas~p~~~~l~l~Ir~~--g~~T~~L~~~~~~ 680 (808)
+|++++.+++++++|+++.|..+.|+||||+.|+++.. +...+|||||+|.|.++.++|+||.. |.+|+.|.++
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l--- 77 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKL--- 77 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcC---
Confidence 36788899999999999988778899999999999876 56688999999999888999999977 7788877542
Q ss_pred ccCCCCCCCcccccccCCCCCEEEEe-cccCCCCCCCC-CCCeEEEEEecccHHHHHHHHHHHHHhccccc---------
Q 003589 681 VCRPPPNGISGLLRAEGHNNPEVLID-GPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--------- 749 (808)
Q Consensus 681 ~~~~~~~G~s~~l~~~~~~~~~v~i~-GPyG~~~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~~~~~--------- 749 (808)
+ .|+.+.+. ||+|.+..+.. ..+++|||||||||||++++++++.......+
T Consensus 78 -----~------------~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~ 140 (241)
T cd06195 78 -----K------------PGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRY 140 (241)
T ss_pred -----C------------CCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEccCC
Confidence 2 25899999 99999875433 46899999999999999999999985432221
Q ss_pred ---hHHHHHHHHhhhc-CCCEEE-EEEcCCCCCCccccccccccCHHHH
Q 003589 750 ---EEEENDLENGRDT-GVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKS 793 (808)
Q Consensus 750 ---~~~~~eL~~l~~~-~~~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~ 793 (808)
..+.+||.++.++ ..+..+ ++.+.+++. | +..|++++.+.
T Consensus 141 ~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~-~~~g~v~~~l~ 185 (241)
T cd06195 141 AEELAYQDEIEALAKQYNGKFRYVPIVSREKEN---G-ALTGRIPDLIE 185 (241)
T ss_pred HHHhhhHHHHHHHHhhcCCCEEEEEEECcCCcc---C-CCceEhHHhhh
Confidence 1267889888876 445433 344444555 6 77899987644
No 22
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.85 E-value=1.7e-20 Score=202.30 Aligned_cols=173 Identities=15% Similarity=0.204 Sum_probs=133.2
Q ss_pred ceeEEEEEEEEecCCEEEEEEEcCCC--cccCCCCEEEEEeccC-----------------------------CCCeeee
Q 003589 600 IKAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-----------------------------SPFEWHP 648 (808)
Q Consensus 600 ~~~~~i~~v~~l~~~v~~l~l~~p~~--~~~~pGQyv~l~~p~~-----------------------------~~~~~hP 648 (808)
...++|++++.+++++.+|+|+.|.+ +.|+||||+.|.+|.. +....||
T Consensus 9 ~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 88 (283)
T cd06188 9 KWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRA 88 (283)
T ss_pred eEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccc
Confidence 35678999999999999999998875 7899999999999753 1223599
Q ss_pred eEeeecCC-CCeEEEEEEE-----------cCCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCC
Q 003589 649 FSITSAPD-DDYLSVHIRT-----------LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDY 716 (808)
Q Consensus 649 FSIas~p~-~~~l~l~Ir~-----------~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~ 716 (808)
|||+|+|. ++.++|+||. .|..|+.|.+ + + .|++|.|.||+|.+..+
T Consensus 89 ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l-------~------------~Gd~v~i~gP~G~f~l~- 147 (283)
T cd06188 89 YSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-L-------K------------PGDKVTASGPFGEFFIK- 147 (283)
T ss_pred cCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc-C-------C------------CCCEEEEECcccccccc-
Confidence 99999996 6799999997 3455666654 2 2 35899999999999864
Q ss_pred CCCCeEEEEEecccHHHHHHHHHHHHHhccc-cc------------hHHHHHHHHhhhcCCCEEEEEE-cCCC--CCCcc
Q 003589 717 KEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE------------EEEENDLENGRDTGVNTTIIII-DNNY--EPFFF 780 (808)
Q Consensus 717 ~~~~~vllIagGiGITP~lsil~~l~~~~~~-~~------------~~~~~eL~~l~~~~~~~~i~vt-~~~~--~~~~~ 780 (808)
...+++|||||||||||++||+++++..... .+ ..+.+||.++++++++..++++ +.+. +.
T Consensus 148 ~~~~~~vlIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~--- 224 (283)
T cd06188 148 DTDREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDN--- 224 (283)
T ss_pred CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCC---
Confidence 4567899999999999999999998764321 11 1267899998887777544432 3322 45
Q ss_pred ccccccccCHHHHHHh
Q 003589 781 WTQKKGPIQDKKSILL 796 (808)
Q Consensus 781 w~g~~G~v~~~~~~~~ 796 (808)
|.|.+|+|++......
T Consensus 225 ~~~~~G~v~~~~~~~~ 240 (283)
T cd06188 225 WDGYTGFIHQVLLENY 240 (283)
T ss_pred CCCcceeecHHHHHHH
Confidence 8899999999877654
No 23
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.84 E-value=3.2e-20 Score=193.55 Aligned_cols=170 Identities=17% Similarity=0.281 Sum_probs=131.4
Q ss_pred eEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc--CCccHHHHHHh
Q 003589 602 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVF 678 (808)
Q Consensus 602 ~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~--g~~T~~L~~~~ 678 (808)
.++|.+++.++++++++++..+..+.|+||||+.|+++... .+|||||+|+|. .+.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 46789999999999999999887788999999999998644 689999999986 57899999987 77888886543
Q ss_pred hhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccch--------
Q 003589 679 SEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE-------- 750 (808)
Q Consensus 679 ~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~~-------- 750 (808)
+ .|++|.|.||||.+... ...+++|||||||||||++++++++.++......
T Consensus 80 -------~------------~G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~~r~ 139 (227)
T cd06213 80 -------R------------TGERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGART 139 (227)
T ss_pred -------C------------CCCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEeeCC
Confidence 2 25899999999998753 3457899999999999999999999876433221
Q ss_pred ----HHHHHHHHhhhcC-CCEEE--EEEcC-CCCCCccccccccccCHHHHHHh
Q 003589 751 ----EEENDLENGRDTG-VNTTI--IIIDN-NYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 751 ----~~~~eL~~l~~~~-~~~~i--~vt~~-~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
.+.+|+.+++++. .+..+ .++++ ++.. |.|.+|++++.+...+
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~---~~g~~g~v~~~l~~~~ 190 (227)
T cd06213 140 QRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSS---WKGARGLVTEHIAEVL 190 (227)
T ss_pred HHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCC---ccCCcccHHHHHHhhc
Confidence 2568888887653 34332 23333 2344 8899999988665543
No 24
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.84 E-value=3.5e-20 Score=204.77 Aligned_cols=172 Identities=17% Similarity=0.288 Sum_probs=134.3
Q ss_pred cceeEEEEEEEEecCCEEEEEEEcC---CCcccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEcC--CccH
Q 003589 599 SIKAVSIQKVAVYPGNVLALHMSKP---DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLG--DWTR 672 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~~v~~l~l~~p---~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~g--~~T~ 672 (808)
....++|++++.+++++..|+|..+ +.+.|+||||+.|.+|+.. .+|||||+|.|. ++.++|+||..+ .+|.
T Consensus 105 ~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~~~~~l~~~ik~~~~G~~s~ 182 (340)
T PRK11872 105 LKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPNATNQLQFLIRLLPDGVMSN 182 (340)
T ss_pred ceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCCCCCeEEEEEEECCCCcchh
Confidence 3456899999999999999999876 4678999999999998643 589999999985 578999999974 4566
Q ss_pred HHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc---
Q 003589 673 QLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 749 (808)
Q Consensus 673 ~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~--- 749 (808)
.|.+.+ + .|+.|.|+||||.+..+ ...+++||||||+||||++|+++++++......
T Consensus 183 ~L~~~l-------~------------~G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v~l 242 (340)
T PRK11872 183 YLRERC-------Q------------VGDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGCSPPVHL 242 (340)
T ss_pred hHhhCC-------C------------CCCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcEEE
Confidence 665432 2 35899999999998764 335789999999999999999999987543222
Q ss_pred --------h-HHHHHHHHhhhcCCCEE-EEEEcCCCCCCccccccccccCHHHHHH
Q 003589 750 --------E-EEENDLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSIL 795 (808)
Q Consensus 750 --------~-~~~~eL~~l~~~~~~~~-i~vt~~~~~~~~~w~g~~G~v~~~~~~~ 795 (808)
. .+.+||.+++++.++.. .++.+.+++. |.|.+|+|++.+...
T Consensus 243 ~~g~r~~~dl~~~~el~~~~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~~ 295 (340)
T PRK11872 243 YYGVRHAADLCELQRLAAYAERLPNFRYHPVVSKASAD---WQGKRGYIHEHFDKA 295 (340)
T ss_pred EEecCChHHhccHHHHHHHHHHCCCcEEEEEEeCCCCc---CCCceeeccHHHHHh
Confidence 1 26788988887777733 3344455566 999999999876654
No 25
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.84 E-value=7.5e-20 Score=201.67 Aligned_cols=171 Identities=15% Similarity=0.266 Sum_probs=131.4
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc--CCccHHHHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 677 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~--g~~T~~L~~~ 677 (808)
+.++|++++.++++++.++|..++.+.|+||||+.|.++... ..+|||||+|.|. ++.++|+||.. |..|..|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~~-~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNSA-ETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCCC-EeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 467899999999999999999877888999999999998532 3579999999996 46899999998 5567777543
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc--------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-------- 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~-------- 749 (808)
+ + .|++|.|.||+|.+..+....+++|||||||||||++||+++++.+....+
T Consensus 89 l-------~------------~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r 149 (332)
T PRK10684 89 V-------K------------RGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVR 149 (332)
T ss_pred C-------C------------CCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 2 2 358999999999987644456789999999999999999999886532222
Q ss_pred ----hHHHHHHHHhhhcCCCEEEEEEcCCCCCCccccc-cccccCHHHHHH
Q 003589 750 ----EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQ-KKGPIQDKKSIL 795 (808)
Q Consensus 750 ----~~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g-~~G~v~~~~~~~ 795 (808)
..|.+||.++++++++..++++.... . |.| .+|+++++....
T Consensus 150 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~-~---~~~~~~grl~~~~l~~ 196 (332)
T PRK10684 150 TPQDVIFADEWRQLKQRYPQLNLTLVAENN-A---TEGFIAGRLTRELLQQ 196 (332)
T ss_pred ChHHhhhHHHHHHHHHHCCCeEEEEEeccC-C---CCCccccccCHHHHHH
Confidence 13788999988877775444443222 2 233 589999865544
No 26
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.84 E-value=1.2e-19 Score=191.00 Aligned_cols=172 Identities=17% Similarity=0.274 Sum_probs=133.3
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCC----cccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEc--CCccHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQL 674 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~--g~~T~~L 674 (808)
+.++|++++.+++++.+++|+.|.+ +.|+||||+.|.+|..+...+|||||+|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4678999999999999999998764 579999999999986555678999999998877999999998 5567777
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCC-CCCeEEEEEecccHHHHHHHHHHHHHhccccc----
Q 003589 675 RTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---- 749 (808)
Q Consensus 675 ~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~~~~~---- 749 (808)
.+.+ + .|+.+.|.||+|.+..... .++++||||||+||||++++++++.+.....+
T Consensus 82 ~~~~-------~------------~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v~l~ 142 (241)
T cd06214 82 NDEL-------K------------AGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLV 142 (241)
T ss_pred Hhcc-------C------------CCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcEEEE
Confidence 5422 2 2578999999999876444 57899999999999999999999987642111
Q ss_pred --------hHHHHHHHHhhhcCC-CEEE-EEEcCCCCCCccccccccccCHHHHH
Q 003589 750 --------EEEENDLENGRDTGV-NTTI-IIIDNNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 750 --------~~~~~eL~~l~~~~~-~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
..+.+|+.++.+..+ +..+ ++.+.++.. |.+..|++++....
T Consensus 143 ~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~ 194 (241)
T cd06214 143 YGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGD---PDLLRGRLDAAKLN 194 (241)
T ss_pred EEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCC---cccccCccCHHHHH
Confidence 126788888876655 3332 344444555 77889999876543
No 27
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.83 E-value=9.5e-20 Score=193.23 Aligned_cols=165 Identities=25% Similarity=0.390 Sum_probs=125.8
Q ss_pred EEEEEEecCCEEEEEEEcCCC----cccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEcCCccHHHHHHhh
Q 003589 605 IQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRTVFS 679 (808)
Q Consensus 605 i~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~g~~T~~L~~~~~ 679 (808)
|.+++.+++++..++++.+.+ +.|+||||+.|.+|..+ .|||||+|+|. ++.++|+||..|.+|+.|.++
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l-- 75 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHEL-- 75 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHcC--
Confidence 356788999888888776543 78999999999998654 39999999996 689999999999999887542
Q ss_pred hccCCCCCCCcccccccCCCCCEEEEecccCCCCC-CCCCCCeEEEEEecccHHHHHHHHHHHHHhccc-cc--------
Q 003589 680 EVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQ-DYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE-------- 749 (808)
Q Consensus 680 ~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~-~~~~~~~vllIagGiGITP~lsil~~l~~~~~~-~~-------- 749 (808)
+ .|+++.|+||||.+.. +...++++||||||+||||++||++++++.... .+
T Consensus 76 ------~------------~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r 137 (253)
T cd06221 76 ------K------------PGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGAR 137 (253)
T ss_pred ------C------------CCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecC
Confidence 2 2588999999999543 222578999999999999999999999875321 11
Q ss_pred ----hHHHHHHHHhhhcCCCE-EEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 ----EEEENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 ----~~~~~eL~~l~~~~~~~-~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+||.++.+. .+. ..++++++.+. |.+..|++++.+.+..
T Consensus 138 ~~~~~~~~~~L~~l~~~-~~~~~~~~~s~~~~~---~~~~~g~v~~~l~~~~ 185 (253)
T cd06221 138 TPEDLLFKEELKEWAKR-SDVEVILTVDRAEEG---WTGNVGLVTDLLPELT 185 (253)
T ss_pred ChHHcchHHHHHHHHhc-CCeEEEEEeCCCCCC---ccCCccccchhHHhcC
Confidence 1267889988876 553 33445555556 8888999988655443
No 28
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.83 E-value=1.5e-19 Score=187.36 Aligned_cols=160 Identities=23% Similarity=0.340 Sum_probs=125.6
Q ss_pred EEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHHHHHHhhhccC
Q 003589 607 KVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVCR 683 (808)
Q Consensus 607 ~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~~~ 683 (808)
+++.+++++..++++.|..+.|+||||+.|.++..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~------ 75 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDL------ 75 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcC------
Confidence 356677999999999887788999999999999765668999999999976 8999999999 8889888654
Q ss_pred CCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc------------hH
Q 003589 684 PPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------------EE 751 (808)
Q Consensus 684 ~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~------------~~ 751 (808)
. .|+++.|.||+|.+......++++||||||+||||++|+++++.+.....+ ..
T Consensus 76 --~------------~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~ 141 (223)
T cd00322 76 --K------------PGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLL 141 (223)
T ss_pred --C------------CCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHHHhh
Confidence 1 258999999999986545677899999999999999999999987532111 12
Q ss_pred HHHHHHHhhhcCCCEEEE-EEcCCCCCCccccccccccC
Q 003589 752 EENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQ 789 (808)
Q Consensus 752 ~~~eL~~l~~~~~~~~i~-vt~~~~~~~~~w~g~~G~v~ 789 (808)
+.+||.++.+.+.+..++ +.+++... |.+..+++.
T Consensus 142 ~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 177 (223)
T cd00322 142 FLDELEELAKEGPNFRLVLALSRESEA---KLGPGGRID 177 (223)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCC---CCcccceee
Confidence 678898888766664433 44444444 666666554
No 29
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.83 E-value=7e-20 Score=190.14 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=123.7
Q ss_pred EEEEecCCEEEEEEEcCCC---cccCCCCEEEEEeccC----------------CCCeeeeeEeeecCCC----CeEEEE
Q 003589 607 KVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAV----------------SPFEWHPFSITSAPDD----DYLSVH 663 (808)
Q Consensus 607 ~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~----------------~~~~~hPFSIas~p~~----~~l~l~ 663 (808)
+++.++++|.+++|..|.+ +.|+|||||.|.++.. +...+|||||+|.|++ +.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3567899999999998877 8999999999999753 1135799999999954 689999
Q ss_pred EEEcCCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCC---CCCCeEEEEEecccHHHHHHHHHH
Q 003589 664 IRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDY---KEYEVVLLVGLGIGATPMISIVKD 740 (808)
Q Consensus 664 Ir~~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~---~~~~~vllIagGiGITP~lsil~~ 740 (808)
||..|++|+.|.+...... . .+..+.|+||||.+..+. ..++++|||||||||||++|++++
T Consensus 82 vk~~G~~T~~L~~~~~~~~---~------------~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~ 146 (220)
T cd06197 82 VRKKGPVTGFLFQVARRLR---E------------QGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRA 146 (220)
T ss_pred EEeCCCCCHHHHHhhhccc---C------------CCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHH
Confidence 9999999999988653200 0 257999999999987543 356899999999999999999999
Q ss_pred HHHhccc-cc------------hHHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHH
Q 003589 741 IVNNMKA-IE------------EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 741 l~~~~~~-~~------------~~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
+++.... .+ ..+.+||.++.........+.+. .++-||..|.+......
T Consensus 147 l~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~-----~v~~CGP~~m~~~~~~~ 208 (220)
T cd06197 147 ILSSRNTTWDITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFITS-----EVYLCGPPALEKAVLEW 208 (220)
T ss_pred HHhcccCCCcEEEEEEecchhhHHHHHHHHhccCCceEEEEEEec-----cEEEECcHHHHHHHHHH
Confidence 9864311 11 13677776655321112333322 35678999988865443
No 30
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.83 E-value=1.8e-19 Score=190.44 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=124.9
Q ss_pred ceeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEc--CCccHHHHHH
Q 003589 600 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 677 (808)
Q Consensus 600 ~~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~--g~~T~~L~~~ 677 (808)
|..++|++++.+++++++++++.|. ..|+||||+.|.++..+...+|||||+|.|+++.++|+||.. |..|+.|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 5788999999999999999998763 379999999999974444468999999999878999999997 778887753
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCC-CCCCCC-CCCeEEEEEecccHHHHHHHHHHHHHhccccc------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGA-PAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------ 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~-~~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~~~~~------ 749 (808)
+ + .|++|.|.||+|. +..+.. ..+++|||||||||||++||++++.+.....+
T Consensus 82 l-------~------------~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g 142 (248)
T PRK10926 82 L-------K------------PGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHA 142 (248)
T ss_pred C-------C------------CCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEe
Confidence 2 2 3589999998844 433322 34789999999999999999999875432211
Q ss_pred ------hHHHHHHHHhhhcCC-CEEEE-EEcCCCCCCccccccccccCHHH
Q 003589 750 ------EEEENDLENGRDTGV-NTTII-IIDNNYEPFFFWTQKKGPIQDKK 792 (808)
Q Consensus 750 ------~~~~~eL~~l~~~~~-~~~i~-vt~~~~~~~~~w~g~~G~v~~~~ 792 (808)
..+.+||.++++.++ +..++ +.+++ +. +.+.+|+|++.+
T Consensus 143 ~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~-~~---~~~~~G~v~~~i 189 (248)
T PRK10926 143 ARYAADLSYLPLMQELEQRYEGKLRIQTVVSRE-TA---PGSLTGRVPALI 189 (248)
T ss_pred CCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCC-CC---CCCcCCccchhh
Confidence 126789988887664 54333 33332 22 345688887643
No 31
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.83 E-value=1.2e-19 Score=188.09 Aligned_cols=164 Identities=24% Similarity=0.325 Sum_probs=124.6
Q ss_pred eEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCC-CCeeeeeEeeecCCCCeEEEEEEEc---CCccHHHHHH
Q 003589 602 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS-PFEWHPFSITSAPDDDYLSVHIRTL---GDWTRQLRTV 677 (808)
Q Consensus 602 ~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~-~~~~hPFSIas~p~~~~l~l~Ir~~---g~~T~~L~~~ 677 (808)
.++|++++.++++++.++++.|+.+.|+||||+.|.++..+ ..++|||||+|.|.++.++|+||.. |++|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 56899999999999999999988889999999999997654 3478999999999889999999986 5677776432
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc--------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-------- 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~-------- 749 (808)
++ |+++.+.||||.+.. .+++||||||+||||++|+++++....+..+
T Consensus 82 --------~~------------G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~~~r 137 (218)
T cd06196 82 --------QP------------GDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANK 137 (218)
T ss_pred --------CC------------CCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCCCCceEEEEEecC
Confidence 23 589999999999753 2578999999999999999999987543221
Q ss_pred ----hHHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 750 ----EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 750 ----~~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
..+.+||.++.. .....++++++... ...|+++++....+
T Consensus 138 ~~~~~~~~~el~~l~~--~~~~~~~s~~~~~~-----~~~g~~~~~~l~~~ 181 (218)
T cd06196 138 TEKDIILKDELEKMLG--LKFINVVTDEKDPG-----YAHGRIDKAFLKQH 181 (218)
T ss_pred CHHHHhhHHHHHHhhc--ceEEEEEcCCCCCC-----eeeeEECHHHHHHh
Confidence 126778877642 23333344433322 25799987665543
No 32
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.83 E-value=2.5e-19 Score=202.62 Aligned_cols=177 Identities=16% Similarity=0.192 Sum_probs=134.2
Q ss_pred ccceeEEEEEEEEecCCEEEEEEEcCC---CcccCCCCEEEEEeccCC--CCeeeeeEeeecCCCCeEEEEEEEc--CCc
Q 003589 598 SSIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDW 670 (808)
Q Consensus 598 ~~~~~~~i~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~~--~~~~hPFSIas~p~~~~l~l~Ir~~--g~~ 670 (808)
..++.++|++++.+++++..|++..++ .+.|+||||+.|.++..+ ..++|||||+|.|+++.++|+||.. |..
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~ 231 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKV 231 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCee
Confidence 446778999999999999999999764 257999999999997433 2357999999999888999999998 778
Q ss_pred cHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc-
Q 003589 671 TRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE- 749 (808)
Q Consensus 671 T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~- 749 (808)
|..|.+.+ + +|++|.|.||||.+..+....+++|||||||||||++||++++++.....+
T Consensus 232 S~~L~~~l-------~------------~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v 292 (399)
T PRK13289 232 SNYLHDHV-------N------------VGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPKRPV 292 (399)
T ss_pred hHHHhhcC-------C------------CCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCCCCE
Confidence 88886532 2 358999999999987654456799999999999999999999986532222
Q ss_pred -----------hHHHHHHHHhhhcCCCEE-EEEEcCCC-CCCccccc----cccccCHHHHHHh
Q 003589 750 -----------EEEENDLENGRDTGVNTT-IIIIDNNY-EPFFFWTQ----KKGPIQDKKSILL 796 (808)
Q Consensus 750 -----------~~~~~eL~~l~~~~~~~~-i~vt~~~~-~~~~~w~g----~~G~v~~~~~~~~ 796 (808)
..+.+||.++++.+++.. .++++++. .. |.+ ..|+++++.....
T Consensus 293 ~l~~~~r~~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~g~i~~~~l~~~ 353 (399)
T PRK13289 293 HFIHAARNGGVHAFRDEVEALAARHPNLKAHTWYREPTEQD---RAGEDFDSEGLMDLEWLEAW 353 (399)
T ss_pred EEEEEeCChhhchHHHHHHHHHHhCCCcEEEEEECCCcccc---ccCCcccccCcccHHHHHhh
Confidence 127789999887776633 33344332 22 333 3699997655443
No 33
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.82 E-value=2.6e-19 Score=189.58 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=127.1
Q ss_pred ceeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEcCCccHHHHHHhh
Q 003589 600 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFS 679 (808)
Q Consensus 600 ~~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~~~~~ 679 (808)
++.++|++++.+++++..+++..|..+.|+||||+.|++|..+...+|||||+|.| +++++|+||..|.+|+.|.++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC--
Confidence 46788999999999999999998767889999999999997766679999999998 889999999999999877532
Q ss_pred hccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc---------h
Q 003589 680 EVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------E 750 (808)
Q Consensus 680 ~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------~ 750 (808)
+ .|+++.|.||||.+.......+++|+||||+||||++|+++++.....+.. .
T Consensus 81 ------~------------~G~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~~~v~l~~~~r~~~d 142 (250)
T PRK00054 81 ------K------------EGDELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKGVEVTTVLGARTKDE 142 (250)
T ss_pred ------C------------CCCEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcCCcEEEEEEcCCHHH
Confidence 2 358999999999843212366899999999999999999999986432211 1
Q ss_pred -HHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHH
Q 003589 751 -EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 795 (808)
Q Consensus 751 -~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~ 795 (808)
.+.+||.++. + +++.. ++. |.+.+|++++.+...
T Consensus 143 ~~~~~el~~~~----~--~~~~~--~~~---~~~~~g~v~~~l~~~ 177 (250)
T PRK00054 143 VIFEEEFAKVG----D--VYVTT--DDG---SYGFKGFVTDVLDEL 177 (250)
T ss_pred hhhHHHHHhcC----C--EEEEe--cCC---CCCcccchhHhHhhh
Confidence 2556776633 1 22222 234 778889999876544
No 34
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.82 E-value=3.2e-19 Score=190.21 Aligned_cols=164 Identities=21% Similarity=0.322 Sum_probs=126.5
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEcCCccHHHHHHhhh
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSE 680 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~~~~~~ 680 (808)
.+++|++++.+++++..+++..| +.|+||||+.|++|..+ .|||||++.+ ++.++|+||..|..|..|..+
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~l--- 78 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFNL--- 78 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHhC---
Confidence 35789999999999999999875 47999999999998653 3999999875 678999999999988877542
Q ss_pred ccCCCCCCCcccccccCCCCCEEEEecccCC-CCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcccc-c---------
Q 003589 681 VCRPPPNGISGLLRAEGHNNPEVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-E--------- 749 (808)
Q Consensus 681 ~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~-~--------- 749 (808)
+ +|+.|.|.||+|. +..+....+++||||||+||||++|++++++++.... +
T Consensus 79 -----~------------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~ 141 (263)
T PRK08221 79 -----K------------EGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKN 141 (263)
T ss_pred -----C------------CCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCC
Confidence 2 2589999999998 5443334579999999999999999999998753321 1
Q ss_pred ---hHHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHH
Q 003589 750 ---EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 795 (808)
Q Consensus 750 ---~~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~ 795 (808)
..+.+||.++.+. .+..+. .+++.+. |.+..|+|++.+...
T Consensus 142 ~~~l~~~~el~~~~~~-~~~~~~-~~~~~~~---~~~~~G~v~~~l~~~ 185 (263)
T PRK08221 142 PDDILFKEDLKRWREK-INLILT-LDEGEEG---YRGNVGLVTKYIPEL 185 (263)
T ss_pred HHHhhHHHHHHHHhhc-CcEEEE-ecCCCCC---CccCccccChhhHhc
Confidence 1267888887754 343333 3444455 889999999766553
No 35
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.82 E-value=3e-19 Score=186.77 Aligned_cols=171 Identities=16% Similarity=0.237 Sum_probs=130.7
Q ss_pred EEEEEEEecCCEEEEEEEcCC---CcccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc--CCccHHHHHH
Q 003589 604 SIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 677 (808)
Q Consensus 604 ~i~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~--g~~T~~L~~~ 677 (808)
+|.+++.+++++..++|+.++ .+.++||||+.|.+|..+....|||||+|.|. ++.++|+||.. |..|+.|.+.
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 678889999999999999875 36899999999999976666789999999885 45899999997 6677776532
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCC-CeEEEEEecccHHHHHHHHHHHHHhcc-ccc------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEY-EVVLLVGLGIGATPMISIVKDIVNNMK-AIE------ 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~-~~vllIagGiGITP~lsil~~l~~~~~-~~~------ 749 (808)
+ .|+++.|.||||.+..+.... +++||||||+||||+++++++++.+.. ..+
T Consensus 82 --------~------------~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~ 141 (234)
T cd06183 82 --------K------------PGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYA 141 (234)
T ss_pred --------C------------CCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEe
Confidence 2 358999999999987543333 799999999999999999999987521 111
Q ss_pred ------hHHHHHHHHhhhcC-CCEE-EEEEcCCCCCCccccccccccCHHHHHHhh
Q 003589 750 ------EEEENDLENGRDTG-VNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 750 ------~~~~~eL~~l~~~~-~~~~-i~vt~~~~~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
..+.+||.++.... .+.. .++.+++.+. |.+..|+++++......
T Consensus 142 ~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~l~~~~ 194 (234)
T cd06183 142 NRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEG---WKGGVGFITKEMIKEHL 194 (234)
T ss_pred cCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcC---CccccceECHHHHHHhC
Confidence 12678888887653 3333 3344444556 88999999988665443
No 36
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.82 E-value=2.9e-19 Score=198.69 Aligned_cols=170 Identities=16% Similarity=0.247 Sum_probs=129.1
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCC----cccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEcC--CccHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLG--DWTRQL 674 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g--~~T~~L 674 (808)
+.++|.+++.+++++++|+|+.|.+ +.|+||||+.|.++..+...+|||||+|.|+++.++|+||..+ ..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 5778999999999999999997743 5899999999999754545689999999998889999999984 456666
Q ss_pred HHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCC--CCCeEEEEEecccHHHHHHHHHHHHHhccccc---
Q 003589 675 RTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYK--EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 749 (808)
Q Consensus 675 ~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~--~~~~vllIagGiGITP~lsil~~l~~~~~~~~--- 749 (808)
...+ + .|+.+.|.||+|.+..+.. ..+++|||||||||||++||+++++.......
T Consensus 82 ~~~l-------~------------~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~v~l 142 (352)
T TIGR02160 82 NDEI-------R------------PGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPRSTFTL 142 (352)
T ss_pred HhcC-------C------------CCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCCceEEE
Confidence 4332 2 3589999999999865332 34789999999999999999999887532212
Q ss_pred ---------hHHHHHHHHhhhcCCC-EEE-EEEcCCCCCCccccccccccCHHH
Q 003589 750 ---------EEEENDLENGRDTGVN-TTI-IIIDNNYEPFFFWTQKKGPIQDKK 792 (808)
Q Consensus 750 ---------~~~~~eL~~l~~~~~~-~~i-~vt~~~~~~~~~w~g~~G~v~~~~ 792 (808)
..+.+||.++++.+++ ..+ ++.+.+.+. |.+..|+++...
T Consensus 143 ~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~~~~~gr~~~~~ 193 (352)
T TIGR02160 143 VYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPRE---APLLSGRLDGER 193 (352)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcC---cccccCccCHHH
Confidence 1378899998876664 433 344444444 666788887643
No 37
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.82 E-value=3.6e-19 Score=192.38 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=111.2
Q ss_pred ceeEEEEEEEEecCCEEEEEEE--cCC---CcccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEcCCccHH
Q 003589 600 IKAVSIQKVAVYPGNVLALHMS--KPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQ 673 (808)
Q Consensus 600 ~~~~~i~~v~~l~~~v~~l~l~--~p~---~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~g~~T~~ 673 (808)
++.++|++++.+++++..++++ .|. .+.|+||||+.|++|..+ .|||||+|.|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 4678999999999986555554 442 467999999999998643 48999999985 57899999999999988
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCC-CCCCCCCeEEEEEecccHHHHHHHHHHHHHhcc-ccc--
Q 003589 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPA-QDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-AIE-- 749 (808)
Q Consensus 674 L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~-~~~~~~~~vllIagGiGITP~lsil~~l~~~~~-~~~-- 749 (808)
|.++ + +|+++.|+||||.+. .+....++++||||||||||++||+++++.+.. ..+
T Consensus 82 L~~l--------~------------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~ 141 (289)
T PRK08345 82 IHRL--------K------------EGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNIT 141 (289)
T ss_pred HHhC--------C------------CCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEE
Confidence 7542 2 258999999999843 322334689999999999999999999887541 111
Q ss_pred ----------hHHHHHHHHhhhcCCCEE
Q 003589 750 ----------EEEENDLENGRDTGVNTT 767 (808)
Q Consensus 750 ----------~~~~~eL~~l~~~~~~~~ 767 (808)
..+.+||.+++++..+..
T Consensus 142 l~~~~r~~~d~~~~deL~~l~~~~~~~~ 169 (289)
T PRK08345 142 LIYGAKYYEDLLFYDELIKDLAEAENVK 169 (289)
T ss_pred EEEecCCHHHhhHHHHHHHHHhcCCCEE
Confidence 127789998877666643
No 38
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.82 E-value=2.1e-19 Score=186.73 Aligned_cols=141 Identities=23% Similarity=0.259 Sum_probs=113.6
Q ss_pred EEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHHHHHHhhhc
Q 003589 605 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 681 (808)
Q Consensus 605 i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~L~~~~~~~ 681 (808)
|.+++.+++++++++++.|+.+.|+||||++|+++.. ..|||||+|.|.+ +.++|+||.. |.+|..|.+.+
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~--- 74 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEA--- 74 (222)
T ss_pred CceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhcc---
Confidence 3567889999999999998888999999999999863 5699999999865 7899999987 56788776633
Q ss_pred cCCCCCCCcccccccCCCCCEEEEecccCCCCCCC-CCCCeEEEEEecccHHHHHHHHHHHHHhccccc-----------
Q 003589 682 CRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDY-KEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----------- 749 (808)
Q Consensus 682 ~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vllIagGiGITP~lsil~~l~~~~~~~~----------- 749 (808)
+ .|+.|.|.||||.+.... ...+++++||||+||||+++++++++......+
T Consensus 75 ----~------------~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~ 138 (222)
T cd06194 75 ----R------------PGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPD 138 (222)
T ss_pred ----C------------CCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChh
Confidence 1 258999999999987543 456789999999999999999999886543222
Q ss_pred -hHHHHHHHHhhhcCCCEE
Q 003589 750 -EEEENDLENGRDTGVNTT 767 (808)
Q Consensus 750 -~~~~~eL~~l~~~~~~~~ 767 (808)
..+.+||.++++++++..
T Consensus 139 ~~~~~~el~~l~~~~~~~~ 157 (222)
T cd06194 139 DLYLHPALLWLAREHPNFR 157 (222)
T ss_pred hccCHHHHHHHHHHCCCeE
Confidence 126788998887676743
No 39
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.82 E-value=2.7e-19 Score=185.14 Aligned_cols=140 Identities=26% Similarity=0.427 Sum_probs=111.1
Q ss_pred CCEEEEEEEcCCC-cccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEcCCccHHHHHHhhhccCCCCCCCc
Q 003589 613 GNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGIS 690 (808)
Q Consensus 613 ~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~g~~T~~L~~~~~~~~~~~~~G~s 690 (808)
.++++|++..+.+ +.|+|||||.|+++..+..++|||||+|.|.+ +.++|+||..|++|+.|.+.+ +
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l-------~---- 75 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERL-------K---- 75 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhC-------C----
Confidence 4688888887665 78999999999998765678999999999865 599999999999999887433 2
Q ss_pred ccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc------------hHHHHHHHH
Q 003589 691 GLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------------EEEENDLEN 758 (808)
Q Consensus 691 ~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~------------~~~~~eL~~ 758 (808)
.|++|.|.||||.+..+.. ++++||||||+||||++|+++++.++....+ ..+.+||.+
T Consensus 76 --------~G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~ 146 (216)
T cd06198 76 --------PGTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRA 146 (216)
T ss_pred --------CCCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHH
Confidence 2589999999999876433 7899999999999999999999987642211 136788988
Q ss_pred hhhcCCCEEEEEEcC
Q 003589 759 GRDTGVNTTIIIIDN 773 (808)
Q Consensus 759 l~~~~~~~~i~vt~~ 773 (808)
+.+++ +..++++..
T Consensus 147 l~~~~-~~~~~~~~~ 160 (216)
T cd06198 147 LAAAA-GVVLHVIDS 160 (216)
T ss_pred HHHhc-CeEEEEEeC
Confidence 87765 544444433
No 40
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.81 E-value=5.2e-19 Score=192.70 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=128.5
Q ss_pred ceeEEEEEEEEec-----CCEEEEEEEcCCCcccCCCCEEEEEeccCC------CCeeeeeEeeecCCC-----CeEEEE
Q 003589 600 IKAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS------PFEWHPFSITSAPDD-----DYLSVH 663 (808)
Q Consensus 600 ~~~~~i~~v~~l~-----~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~------~~~~hPFSIas~p~~-----~~l~l~ 663 (808)
...++|++++.++ +++++|+|+.+..+.|+||||+.|.+|+.. +..+|+|||+|.|.+ ..++|+
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~ 103 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLC 103 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEE
Confidence 3578899999998 899999999988999999999999877421 124799999999832 279999
Q ss_pred EEEc---------------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCC--CCCCeEEEEE
Q 003589 664 IRTL---------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDY--KEYEVVLLVG 726 (808)
Q Consensus 664 Ir~~---------------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~--~~~~~vllIa 726 (808)
||.. |-.|..|.+ + +.|+.|.|.||+|.+.... ...+++||||
T Consensus 104 Vr~~~~~~~~~~~~~~~~~G~~S~~L~~-l-------------------~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIA 163 (307)
T PLN03116 104 VRRAVYYDPETGKEDPAKKGVCSNFLCD-A-------------------KPGDKVQITGPSGKVMLLPEEDPNATHIMVA 163 (307)
T ss_pred EEEEEEecCCcCCCCCccCcchhhhHhh-C-------------------CCCCEEEEEEecCCceeCCCCCCCCcEEEEe
Confidence 9975 334555543 2 2368999999999986522 3446899999
Q ss_pred ecccHHHHHHHHHHHHHhccc-----c------------chHHHHHHHHhhhcCC-CEE-EEEEcCCCCCCccccccccc
Q 003589 727 LGIGATPMISIVKDIVNNMKA-----I------------EEEEENDLENGRDTGV-NTT-IIIIDNNYEPFFFWTQKKGP 787 (808)
Q Consensus 727 gGiGITP~lsil~~l~~~~~~-----~------------~~~~~~eL~~l~~~~~-~~~-i~vt~~~~~~~~~w~g~~G~ 787 (808)
|||||||++||+++++..... . +..|.+||.++++.++ +.. .++.+.+.+. |.|.+|+
T Consensus 164 gGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~---~~g~~g~ 240 (307)
T PLN03116 164 TGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKN---KKGGKMY 240 (307)
T ss_pred cCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcc---cCCCccc
Confidence 999999999999988764311 0 1237889999988776 443 3444555555 8888899
Q ss_pred cCHHHHH
Q 003589 788 IQDKKSI 794 (808)
Q Consensus 788 v~~~~~~ 794 (808)
|++.+..
T Consensus 241 v~~~l~~ 247 (307)
T PLN03116 241 VQDKIEE 247 (307)
T ss_pred hhhHHHH
Confidence 9876544
No 41
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.81 E-value=6.4e-19 Score=192.33 Aligned_cols=176 Identities=12% Similarity=0.090 Sum_probs=134.4
Q ss_pred hccceeEEEEEEEEecCCEEEEEEEcCC--CcccCCCCEEEEEeccC---CCCeeeeeEeeecCC-CCeEEEEEEEc--C
Q 003589 597 RSSIKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV---SPFEWHPFSITSAPD-DDYLSVHIRTL--G 668 (808)
Q Consensus 597 r~~~~~~~i~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~---~~~~~hPFSIas~p~-~~~l~l~Ir~~--g 668 (808)
+..++.++|.+++.+++|+.+++|+.|. .+.|+||||+.+.++.. ....+|||||+|.|+ +++++|+||+. |
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G 128 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDG 128 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCC
Confidence 4567899999999999999999998765 68899999999887632 123689999999996 57999999997 4
Q ss_pred CccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcc--
Q 003589 669 DWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-- 746 (808)
Q Consensus 669 ~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~-- 746 (808)
.+|..|.+ + + +|+.|.|.||+|.+..+....+++|||||||||||++||+++++++..
T Consensus 129 ~~S~~L~~-l-------k------------~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~ 188 (325)
T PTZ00274 129 LMTNHLFG-M-------H------------VGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDS 188 (325)
T ss_pred cccHHHhc-C-------C------------CCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhccccc
Confidence 45777754 2 2 358999999998765444455789999999999999999999886531
Q ss_pred ---cc-c------------hHHHHHHHHhhhcCCC-E-EEEEEcCC--CCCCccccccccccCHHHHHH
Q 003589 747 ---AI-E------------EEEENDLENGRDTGVN-T-TIIIIDNN--YEPFFFWTQKKGPIQDKKSIL 795 (808)
Q Consensus 747 ---~~-~------------~~~~~eL~~l~~~~~~-~-~i~vt~~~--~~~~~~w~g~~G~v~~~~~~~ 795 (808)
.. + ..+.+||.++++.+++ . .+++.+++ .+. |.|..|+|++++...
T Consensus 189 ~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~---w~g~~G~V~~~ll~~ 254 (325)
T PTZ00274 189 GEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDK---WNHFLGYVTKEMVRR 254 (325)
T ss_pred ccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccC---CCCCCCccCHHHHHH
Confidence 11 1 1378899999887764 3 33444432 345 999999999987443
No 42
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.81 E-value=7.7e-19 Score=185.75 Aligned_cols=161 Identities=23% Similarity=0.373 Sum_probs=123.2
Q ss_pred EEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHHHhhh
Q 003589 603 VSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 680 (808)
Q Consensus 603 ~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~~~~~ 680 (808)
++|++++.++++++.++++.|+. ..|+||||++|+++..+ ++|||||+|.| +++.++|+||..|+.|..|.++
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~~--~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l--- 75 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKG--ERIPLTIADWDPEKGTITIVVQVVGKSTRELATL--- 75 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCCC--CccceEeEEEcCCCCEEEEEEEeCCchHHHHHhc---
Confidence 36788999999999999998763 57999999999986433 57999999986 5689999999999988877442
Q ss_pred ccCCCCCCCcccccccCCCCCEE-EEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc---------h
Q 003589 681 VCRPPPNGISGLLRAEGHNNPEV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------E 750 (808)
Q Consensus 681 ~~~~~~~G~s~~l~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------~ 750 (808)
+ .|+++ .|+||||.+.. ....+++||||||+||||++|+++++.+..++.. .
T Consensus 76 -----~------------~G~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~~~r~~~~ 137 (248)
T cd06219 76 -----E------------EGDKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEAGNRVITIIGARTKDL 137 (248)
T ss_pred -----C------------CCCEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEEEcCCHHH
Confidence 2 24788 69999999865 3446799999999999999999999886532211 1
Q ss_pred -HHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 751 -EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 751 -~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
.+.+||.++.++ +++.. .+. |.+..|++++.+...+
T Consensus 138 ~~~~~el~~l~~~-----~~~~~--~~~---~~~~~g~v~~~l~~~~ 174 (248)
T cd06219 138 VILEDEFRAVSDE-----LIITT--DDG---SYGEKGFVTDPLKELI 174 (248)
T ss_pred hhhHHHHHhhcCe-----EEEEe--CCC---CCCccccchHHHHHHH
Confidence 267888887642 22222 234 7788899988766555
No 43
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.80 E-value=8.9e-19 Score=184.68 Aligned_cols=157 Identities=22% Similarity=0.328 Sum_probs=119.6
Q ss_pred EEEEEEecCCEEEEEEEcCC-CcccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHHHhhhcc
Q 003589 605 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEVC 682 (808)
Q Consensus 605 i~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~~~~~~~ 682 (808)
|++++.+++++++|+|+.|. .+.|+||||++|+++......+|||||+|.| ++++++|+||..|.+|+.|.++
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~----- 75 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAEL----- 75 (243)
T ss_pred CceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhC-----
Confidence 35678899999999999876 4689999999999976555689999999997 4789999999999988877532
Q ss_pred CCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc---------h-HH
Q 003589 683 RPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------E-EE 752 (808)
Q Consensus 683 ~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------~-~~ 752 (808)
++ |+++.|.||||.+.......+++||||||+||||++++++++.++..+.. . .+
T Consensus 76 ---~~------------G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~~~v~l~~~~r~~~d~~~ 140 (243)
T cd06192 76 ---KP------------GEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANGNKVTVLAGAKKAKEEFL 140 (243)
T ss_pred ---CC------------CCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCCCeEEEEEecCcHHHHHH
Confidence 22 58999999999876543346899999999999999999999987532111 1 24
Q ss_pred HHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHH
Q 003589 753 ENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDK 791 (808)
Q Consensus 753 ~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~ 791 (808)
.+||.++. ...+++++ ++ |.+..|++++.
T Consensus 141 ~~el~~~~----~~~~~~~~---~~---~~~~~g~v~~~ 169 (243)
T cd06192 141 DEYFELPA----DVEIWTTD---DG---ELGLEGKVTDS 169 (243)
T ss_pred HHHHHhhc----CeEEEEec---CC---CCccceeechh
Confidence 56666552 22333332 34 77888888764
No 44
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.80 E-value=1e-18 Score=188.10 Aligned_cols=162 Identities=21% Similarity=0.364 Sum_probs=123.3
Q ss_pred EEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHHHhhh
Q 003589 603 VSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 680 (808)
Q Consensus 603 ~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~~~~~ 680 (808)
++|++++.+++++..+++..|.. ..++||||+.|+++..+ ++|||||+|.| +++.++|+||..|..|+.|.++
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l--- 76 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAVGKSTRKLAEL--- 76 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcC---
Confidence 46888999999999999988763 57999999999997543 57999999976 4678999999999999888632
Q ss_pred ccCCCCCCCcccccccCCCCCEE-EEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc---------h
Q 003589 681 VCRPPPNGISGLLRAEGHNNPEV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------E 750 (808)
Q Consensus 681 ~~~~~~~G~s~~l~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------~ 750 (808)
+ .|+++ .|.||||.+.. ....+++||||||+||||++++++++.++..+.. .
T Consensus 77 -----~------------~Gd~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~~g~r~~~d 138 (281)
T PRK06222 77 -----K------------EGDSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEAGNKVITIIGARNKDL 138 (281)
T ss_pred -----C------------CCCEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEEEecCCHHH
Confidence 2 25889 69999999865 3446799999999999999999999886543211 1
Q ss_pred -HHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHHhh
Q 003589 751 -EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 751 -~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
.+.+||.++... ++++.+ ++ |.|.+|+|++.+...+.
T Consensus 139 ~~~~~el~~~~~~-----~~v~~~--d~---~~g~~G~v~~~l~~~~~ 176 (281)
T PRK06222 139 LILEDEMKAVSDE-----LYVTTD--DG---SYGRKGFVTDVLKELLE 176 (281)
T ss_pred hhcHHHHHhhCCe-----EEEEcC--CC---CcCcccchHHHHHHHhh
Confidence 245677665532 233332 34 78999999986655543
No 45
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.80 E-value=2.2e-18 Score=182.62 Aligned_cols=146 Identities=21% Similarity=0.342 Sum_probs=122.2
Q ss_pred cceeEEEEEEEEecCCEEEEEEEcCCCcc--cCCCCEEEEEeccCCCCeeeeeEeeecCCCC-eEEEEEEEc--CCccHH
Q 003589 599 SIKAVSIQKVAVYPGNVLALHMSKPDRFR--YKSGQYMFVNCAAVSPFEWHPFSITSAPDDD-YLSVHIRTL--GDWTRQ 673 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~~v~~l~l~~p~~~~--~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~-~l~l~Ir~~--g~~T~~ 673 (808)
.+..++|.+++..+++++.+++..|.+.. |+||||+.|.++..+....|.|||+|+|.++ .+.|.||+. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 45788999999999999999999998874 9999999999998777799999999999875 899999999 566777
Q ss_pred HHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc----
Q 003589 674 LRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---- 749 (808)
Q Consensus 674 L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---- 749 (808)
|.+.+ + +|++|.|.+|.|.|..+....++++||||||||||++||++++....+ .+
T Consensus 84 Lh~~l-------k------------~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~-~~v~l~ 143 (266)
T COG1018 84 LHDHL-------K------------VGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP-ADVVLV 143 (266)
T ss_pred HHhcC-------C------------CCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC-CCEEEE
Confidence 76543 2 469999999999998765455589999999999999999999988764 32
Q ss_pred --------hHHHHHHHHhhhcCCC
Q 003589 750 --------EEEENDLENGRDTGVN 765 (808)
Q Consensus 750 --------~~~~~eL~~l~~~~~~ 765 (808)
..|.+| ..+..+.++
T Consensus 144 h~~R~~~~~af~de-~~l~~~~~~ 166 (266)
T COG1018 144 HAARTPADLAFRDE-LELAAELPN 166 (266)
T ss_pred EecCChhhcchhhH-HHHHhhCCC
Confidence 127787 777766665
No 46
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.80 E-value=1e-18 Score=184.65 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=123.8
Q ss_pred EEEEEEecCCEEEEEEEcCC-CcccCCCCEEEEEecc-CCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHHHhhhc
Q 003589 605 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAA-VSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEV 681 (808)
Q Consensus 605 i~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~-~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~~~~~~ 681 (808)
|++++.+++++++|+|+.|. ...|+||||+.|++|. .+++.+|||||+|.| +++.++|+||..|.+|+.|.++
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l---- 76 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL---- 76 (246)
T ss_pred CcceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC----
Confidence 35678899999999999887 6789999999999986 345688999999988 4789999999999988776432
Q ss_pred cCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcccc---------c-hH
Q 003589 682 CRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI---------E-EE 751 (808)
Q Consensus 682 ~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~---------~-~~ 751 (808)
+ .|++|.|.||||.+.......+++|||||||||||++|+++++.....+. . ..
T Consensus 77 ----~------------~Gd~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~v~l~~~~r~~~d~~ 140 (246)
T cd06218 77 ----K------------AGDELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFRSADDLF 140 (246)
T ss_pred ----C------------CCCEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcCCceEEEEEccchhhhh
Confidence 2 25899999999974432235789999999999999999999998632211 1 12
Q ss_pred HHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHHhh
Q 003589 752 EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 752 ~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
+.+||.++.. + ++++.. +. |.+.+|+|++.+.+...
T Consensus 141 ~~~eL~~l~~---~--~~~~~~--~~---~~~~~g~v~~~l~~~~~ 176 (246)
T cd06218 141 LVEEFEALGA---E--VYVATD--DG---SAGTKGFVTDLLKELLA 176 (246)
T ss_pred hHHHHHhhCC---c--EEEEcC--CC---CCCcceehHHHHHHHhh
Confidence 6678877642 2 233332 33 67889999987655543
No 47
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.80 E-value=1.7e-18 Score=186.86 Aligned_cols=171 Identities=18% Similarity=0.209 Sum_probs=128.3
Q ss_pred eeEEEEEEEEec-----CCEEEEEEEcCCCcccCCCCEEEEEeccCC-----CCeeeeeEeeecCCC-----CeEEEEEE
Q 003589 601 KAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS-----PFEWHPFSITSAPDD-----DYLSVHIR 665 (808)
Q Consensus 601 ~~~~i~~v~~l~-----~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~-----~~~~hPFSIas~p~~-----~~l~l~Ir 665 (808)
..++|++++.++ +++++++|+.+..+.|+|||||.|.+++.. ....|||||+|.|.+ +.++|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 467899999998 699999999877889999999999876421 124799999998843 58999999
Q ss_pred Ec------------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCC-CCCCeEEEEEecccHH
Q 003589 666 TL------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDY-KEYEVVLLVGLGIGAT 732 (808)
Q Consensus 666 ~~------------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vllIagGiGIT 732 (808)
.. |..|..|.++ + .|++|.|.||+|.+.... ...+++||||||+|||
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~l--------~------------~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIa 148 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCDL--------K------------PGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIA 148 (286)
T ss_pred EEEEecCCCCceeccchHHHHhhC--------C------------CCCEEEEEeecCCcccCCCCCCCCEEEEecCccHH
Confidence 87 4456555542 2 358999999999976432 2346899999999999
Q ss_pred HHHHHHHHHHHhc-----ccc------------chHHHHHHHHhhhcCC-CEEE-EEEcCCCCCCccccccccccCHHHH
Q 003589 733 PMISIVKDIVNNM-----KAI------------EEEEENDLENGRDTGV-NTTI-IIIDNNYEPFFFWTQKKGPIQDKKS 793 (808)
Q Consensus 733 P~lsil~~l~~~~-----~~~------------~~~~~~eL~~l~~~~~-~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~ 793 (808)
|++|++++++... ... +..+.+||.+++++++ +..+ ++++++.+. |.|.+|+|++.+.
T Consensus 149 P~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~---~~g~~g~v~~~i~ 225 (286)
T cd06208 149 PFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKN---ADGGKMYVQDRIA 225 (286)
T ss_pred HHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCC---CCCCceehhhHHH
Confidence 9999999988652 111 1236788999888765 3333 444555556 8888999988655
Q ss_pred H
Q 003589 794 I 794 (808)
Q Consensus 794 ~ 794 (808)
.
T Consensus 226 ~ 226 (286)
T cd06208 226 E 226 (286)
T ss_pred H
Confidence 4
No 48
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.80 E-value=1.3e-18 Score=188.87 Aligned_cols=176 Identities=15% Similarity=0.269 Sum_probs=130.2
Q ss_pred hccceeEEEEEEEEecCCEEEEEEEcCC---CcccCCCCEEEEEeccCCC----CeeeeeEeeecCC-CCeEEEEEEEc-
Q 003589 597 RSSIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSP----FEWHPFSITSAPD-DDYLSVHIRTL- 667 (808)
Q Consensus 597 r~~~~~~~i~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~~~----~~~hPFSIas~p~-~~~l~l~Ir~~- 667 (808)
...++.++|++++.+++++..++|+.+. .+.|+||||+.|+++..+. ...||||++|.|. ++.++|+||..
T Consensus 30 ~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~ 109 (300)
T PTZ00319 30 PDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYF 109 (300)
T ss_pred cCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEec
Confidence 4456788999999999999999998643 2679999999999975321 4689999999885 67899999986
Q ss_pred ----------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCC---------------CCCCeE
Q 003589 668 ----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDY---------------KEYEVV 722 (808)
Q Consensus 668 ----------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~---------------~~~~~v 722 (808)
|..|+.|.. + + .|+.|.|.||+|.+.... ...+++
T Consensus 110 ~~~~~~~~~~G~~S~~L~~-l-------~------------~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~i 169 (300)
T PTZ00319 110 KGVHPSFPNGGRLSQHLYH-M-------K------------LGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAF 169 (300)
T ss_pred cCCCCCCCCCCChhhhhhc-C-------C------------CCCEEEEEccceeeEecCCcceeeccccccccccccceE
Confidence 667777632 2 2 358999999999874321 123589
Q ss_pred EEEEecccHHHHHHHHHHHHHhcccc-c------------hHHHHHHHHhhhcCCCEEEE-EE-cCCCCCCccccccccc
Q 003589 723 LLVGLGIGATPMISIVKDIVNNMKAI-E------------EEEENDLENGRDTGVNTTII-II-DNNYEPFFFWTQKKGP 787 (808)
Q Consensus 723 llIagGiGITP~lsil~~l~~~~~~~-~------------~~~~~eL~~l~~~~~~~~i~-vt-~~~~~~~~~w~g~~G~ 787 (808)
+||||||||||++||+++++.+.... . ..+.+||.+++ ...+..++ +. +++.+. |.|..|+
T Consensus 170 llIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~-~~~~~~~~~~~~~~~~~~---~~~~~G~ 245 (300)
T PTZ00319 170 AMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAA-KDPRFHVWYTLDREATPE---WKYGTGY 245 (300)
T ss_pred EEEecCcccCHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHh-hCCCEEEEEEECCCCCCC---cccccce
Confidence 99999999999999999998753221 1 12678887743 45554433 33 334455 9999999
Q ss_pred cCHHHHHHh
Q 003589 788 IQDKKSILL 796 (808)
Q Consensus 788 v~~~~~~~~ 796 (808)
|+++..+..
T Consensus 246 v~~~~l~~~ 254 (300)
T PTZ00319 246 VDEEMLRAH 254 (300)
T ss_pred eCHHHHHhh
Confidence 999876544
No 49
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.79 E-value=1.7e-18 Score=184.37 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=124.3
Q ss_pred eEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEcCCccHHHHHHhhhc
Q 003589 602 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEV 681 (808)
Q Consensus 602 ~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~~~~~~~ 681 (808)
.++|+++...+++++.+++..| +.|+||||+.|.+|..+ .|||||++. +++.++|+||..|+.|..|.+ +
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~-l--- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGI-GEGYIDLTIRRVGKVTDEVFT-L--- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCC-CCCeEEEEEEeCchhhHHHHc-C---
Confidence 5788999999999999999765 67999999999998643 589999984 578999999999998887753 2
Q ss_pred cCCCCCCCcccccccCCCCCEEEEecccCC-CCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcccc-c----------
Q 003589 682 CRPPPNGISGLLRAEGHNNPEVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-E---------- 749 (808)
Q Consensus 682 ~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~-~---------- 749 (808)
+ .|++|.|.||||. +..+....+++||||||+||||++||+++++++.... +
T Consensus 77 ----~------------~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~ 140 (261)
T TIGR02911 77 ----K------------EGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTP 140 (261)
T ss_pred ----C------------CCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCH
Confidence 2 2589999999999 4433335679999999999999999999988753221 1
Q ss_pred --hHHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHH
Q 003589 750 --EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 750 --~~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
..+.+||.++... .+....+ +.+.+. |.+..|+|++....
T Consensus 141 ~~~~~~~eL~~l~~~-~~~~~~~-~~~~~~---~~~~~g~v~~~l~~ 182 (261)
T TIGR02911 141 DDILFKEDIAEWKGN-INLTLTL-DEAEED---YKGNIGLVTKYIPE 182 (261)
T ss_pred HHhhHHHHHHHHHhc-CcEEEEE-cCCCCC---CcCCeeccCHhHHh
Confidence 1267888888753 3443333 344455 88899999976554
No 50
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.78 E-value=2.4e-18 Score=194.79 Aligned_cols=172 Identities=16% Similarity=0.259 Sum_probs=131.1
Q ss_pred eeEEEEEEEEecCCEEEEEEEcC--CCcccCCCCEEEEEeccC-----------------------------CCCeeeee
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKP--DRFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 649 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p--~~~~~~pGQyv~l~~p~~-----------------------------~~~~~hPF 649 (808)
..++|++++.+++++.+++++.| .++.|+||||+.|++|.. +....|||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 46789999999999999999987 357899999999999742 12457999
Q ss_pred EeeecCC-CCeEEEEEEEc-----------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCC
Q 003589 650 SITSAPD-DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYK 717 (808)
Q Consensus 650 SIas~p~-~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~ 717 (808)
||+|.|. ++.++|+||.. |..|..|.++ + +|+++.|.||+|.+... .
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l--------~------------~Gd~v~v~gP~G~f~~~-~ 272 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSL--------K------------PGDKVTISGPFGEFFAK-D 272 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhC--------C------------CCCEEEEEccccCcEec-C
Confidence 9999996 46899999973 6667766532 2 35899999999999764 4
Q ss_pred CCCeEEEEEecccHHHHHHHHHHHHHhcccc-c------------hHHHHHHHHhhhcCCCEEEEE-EcCC--CCCCccc
Q 003589 718 EYEVVLLVGLGIGATPMISIVKDIVNNMKAI-E------------EEEENDLENGRDTGVNTTIII-IDNN--YEPFFFW 781 (808)
Q Consensus 718 ~~~~vllIagGiGITP~lsil~~l~~~~~~~-~------------~~~~~eL~~l~~~~~~~~i~v-t~~~--~~~~~~w 781 (808)
..+++|||||||||||++||+++++...... + ..+.+|+.++.+++++..+++ ++.+ .+. |
T Consensus 273 ~~~~ivlIAgGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~---~ 349 (409)
T PRK05464 273 TDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDN---W 349 (409)
T ss_pred CCceEEEEEeccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCC---C
Confidence 5679999999999999999999887652211 1 126788888887777754443 3322 344 8
Q ss_pred cccccccCHHHHHHh
Q 003589 782 TQKKGPIQDKKSILL 796 (808)
Q Consensus 782 ~g~~G~v~~~~~~~~ 796 (808)
.|.+|+|++.+.+.+
T Consensus 350 ~g~~G~v~~~l~~~~ 364 (409)
T PRK05464 350 TGYTGFIHNVLYENY 364 (409)
T ss_pred CCccceeCHHHHHhh
Confidence 899999998776543
No 51
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.78 E-value=1e-18 Score=168.34 Aligned_cols=143 Identities=20% Similarity=0.344 Sum_probs=123.7
Q ss_pred cCCCcCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhc-c
Q 003589 163 TDGGAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQIS-D 238 (808)
Q Consensus 163 ~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~-~ 238 (808)
....++++++++.|..+|.|++|.|++++|..++ |..+ ++.++.+||+. .+. + ++.|+|+||+.++.... .
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~-s~~ei~~l~~~-~d~-~--~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP-SEAEINKLFEE-IDA-G--NETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC-cHHHHHHHHHh-ccC-C--CCccCHHHHHHHHHHHhcc
Confidence 3456788999999999999999999999999987 8888 88999999996 443 5 79999999999999776 6
Q ss_pred CChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCc
Q 003589 239 QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (808)
Q Consensus 239 ~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~ 318 (808)
...+++++.+|+.||+|+||+|+.+|++.+++... ++..++.++.+++++|+|+||+|+|+||.+++...|.
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg--------e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~~ 159 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG--------ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPT 159 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc--------ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccCC
Confidence 67799999999999999999999999999998332 2234566777999999999999999999999987653
No 52
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.77 E-value=6.5e-18 Score=177.98 Aligned_cols=179 Identities=17% Similarity=0.246 Sum_probs=148.0
Q ss_pred cceeEEEEEEEEecCCEEEEEEEcCC---CcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccH
Q 003589 599 SIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTR 672 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~ 672 (808)
.+..+++.+.+.+++|+..++|..|. .+....|||+++..|..+....||||..|.+.+ +++++.||.+ |..|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 46889999999999999999998874 467899999999999887788999999999876 7999999998 55565
Q ss_pred HHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccch--
Q 003589 673 QLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE-- 750 (808)
Q Consensus 673 ~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~~-- 750 (808)
.|.++ +. |+.|.+.||.|.+..+...++++.|||||+|||||++++++++.+..+...
T Consensus 130 ~l~~L--------ki------------Gd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~ 189 (286)
T KOG0534|consen 130 HLDSL--------KI------------GDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKIS 189 (286)
T ss_pred HHhcC--------CC------------CCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEE
Confidence 55443 33 589999999999876666689999999999999999999999988664332
Q ss_pred -----------HHHHHHHHhhhcCCC--EEEEEEcCCCCCCccccccccccCHHHHHHhhccc
Q 003589 751 -----------EEENDLENGRDTGVN--TTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLGYK 800 (808)
Q Consensus 751 -----------~~~~eL~~l~~~~~~--~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~~~~~ 800 (808)
.+++||+.++..+++ ...|+++.+.+. |+|-+|+|++++....+..+
T Consensus 190 lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~---w~~~~g~It~~~i~~~l~~~ 249 (286)
T KOG0534|consen 190 LLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEI---WDGSVGFITKDLIKEHLPPP 249 (286)
T ss_pred EEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCccc---ccCccCccCHHHHHhhCCCC
Confidence 388999999998884 556677777777 99999999999776544333
No 53
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.77 E-value=5.7e-18 Score=177.46 Aligned_cols=153 Identities=23% Similarity=0.317 Sum_probs=117.3
Q ss_pred EEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEcCCccHHHHHHhhhcc
Q 003589 603 VSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVC 682 (808)
Q Consensus 603 ~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~~~~~~~~ 682 (808)
++|++++.+++++.+++|+.| +.|+||||+.|.+|.. ..|||||+|.| +.++|+||..|.+|+.|.+ +
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~-l---- 68 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHD-L---- 68 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHh-c----
Confidence 468899999999999999875 5899999999999864 35999999998 7899999999999998875 2
Q ss_pred CCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc----------hHH
Q 003589 683 RPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----------EEE 752 (808)
Q Consensus 683 ~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~----------~~~ 752 (808)
+ .|+++.|.||||.+.. .. .+++|+||||+||||++|++++++++ ++.. ..+
T Consensus 69 ---~------------~Gd~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~-~~i~l~~~~r~~~d~~~ 130 (233)
T cd06220 69 ---K------------EGDKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA-ADVTVLLGARTKEELLF 130 (233)
T ss_pred ---C------------CCCEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc-CCEEEEEecCChHHChh
Confidence 2 2589999999998432 22 68999999999999999999999865 2111 125
Q ss_pred HHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 753 ENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 753 ~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
.+||.+ ..+. +++.. +. |.+.+|++++.+....
T Consensus 131 ~~eL~~----~~~~--~~~~~--~~---~~~~~g~~~~~l~~~~ 163 (233)
T cd06220 131 LDRLRK----SDEL--IVTTD--DG---SYGFKGFVTDLLKELD 163 (233)
T ss_pred HHHHhh----CCcE--EEEEe--CC---CCcccceehHHHhhhc
Confidence 677765 1122 22222 24 7788899988655443
No 54
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.77 E-value=9.5e-18 Score=185.21 Aligned_cols=170 Identities=17% Similarity=0.198 Sum_probs=123.6
Q ss_pred eEEEEEEEEec-----CCEEEEEEEcCCCcccCCCCEEEEEeccC----CCCeeeeeEeeecCC-----CCeEEEEEEEc
Q 003589 602 AVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAV----SPFEWHPFSITSAPD-----DDYLSVHIRTL 667 (808)
Q Consensus 602 ~~~i~~v~~l~-----~~v~~l~l~~p~~~~~~pGQyv~l~~p~~----~~~~~hPFSIas~p~-----~~~l~l~Ir~~ 667 (808)
..+|+....+. +++.+|+|..+..+.|+||||+.|.+|+. .+...|||||+|+|. +++++|+||+.
T Consensus 92 ~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~ 171 (367)
T PLN03115 92 TGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 171 (367)
T ss_pred EEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEE
Confidence 34566555554 38999999887788999999999998743 233579999999983 45899999974
Q ss_pred -----------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCC-CCCCeEEEEEecccHHHHH
Q 003589 668 -----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDY-KEYEVVLLVGLGIGATPMI 735 (808)
Q Consensus 668 -----------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vllIagGiGITP~l 735 (808)
|..|..|.++ + .|+.|.|.||+|.+.... ....++||||||+||||++
T Consensus 172 ~y~~~~g~~~~G~~S~~L~~L--------k------------~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~r 231 (367)
T PLN03115 172 VYTNDQGEIVKGVCSNFLCDL--------K------------PGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFR 231 (367)
T ss_pred EeecCCCccCCeehHhhHhhC--------C------------CcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHH
Confidence 3445555442 2 358999999999876422 3345899999999999999
Q ss_pred HHHHHHHHhccc----------------cc-hHHHHHHHHhhhcCC-CE-EEEEEcCCCCCCccccccccccCHHHHH
Q 003589 736 SIVKDIVNNMKA----------------IE-EEEENDLENGRDTGV-NT-TIIIIDNNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 736 sil~~l~~~~~~----------------~~-~~~~~eL~~l~~~~~-~~-~i~vt~~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
|++++++..... .. ..+.+||.++.+.++ +. ..++.+.+.+. |.|.+|+|++.+.+
T Consensus 232 s~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~---~~G~kgyVqd~i~e 306 (367)
T PLN03115 232 SFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTN---AKGEKMYIQTRMAE 306 (367)
T ss_pred HHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcc---cCCcceeehhHHHH
Confidence 999987543211 01 137789988887765 43 34455666666 99999999887654
No 55
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.77 E-value=3.8e-18 Score=192.91 Aligned_cols=171 Identities=17% Similarity=0.261 Sum_probs=129.0
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCC--CcccCCCCEEEEEeccC-----------------------------CCCeeeee
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 649 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~--~~~~~pGQyv~l~~p~~-----------------------------~~~~~hPF 649 (808)
..++|++++.+++++.+++++.+. ++.|+||||+.|.+|.. +...+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 457889999999999999998874 46899999999999742 12357999
Q ss_pred EeeecCC-CCeEEEEEEEc-----------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCC
Q 003589 650 SITSAPD-DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYK 717 (808)
Q Consensus 650 SIas~p~-~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~ 717 (808)
||+|.|. ++.++|+||.. |..|..|.+ + + +|+.+.|.||+|.+... .
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l-------~------------~Gd~v~i~gP~G~f~l~-~ 268 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-L-------K------------PGDKVTISGPFGEFFAK-D 268 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-C-------C------------CcCEEEEEeccCCCeec-C
Confidence 9999996 47899999974 666666653 2 2 35899999999999763 3
Q ss_pred CCCeEEEEEecccHHHHHHHHHHHHHhccc-cc------------hHHHHHHHHhhhcCCCEEEE-EEcC--CCCCCccc
Q 003589 718 EYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE------------EEEENDLENGRDTGVNTTII-IIDN--NYEPFFFW 781 (808)
Q Consensus 718 ~~~~vllIagGiGITP~lsil~~l~~~~~~-~~------------~~~~~eL~~l~~~~~~~~i~-vt~~--~~~~~~~w 781 (808)
..+++||||||+||||++||+++++..... .+ ..+.+|+.++.+++++..++ ++++ +.+. |
T Consensus 269 ~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~---~ 345 (405)
T TIGR01941 269 TDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDN---W 345 (405)
T ss_pred CCCCEEEEecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCC---C
Confidence 457899999999999999999987754221 11 12678888888777774433 3332 2345 8
Q ss_pred cccccccCHHHHHH
Q 003589 782 TQKKGPIQDKKSIL 795 (808)
Q Consensus 782 ~g~~G~v~~~~~~~ 795 (808)
.|.+|+|++.+...
T Consensus 346 ~g~~G~v~~~l~~~ 359 (405)
T TIGR01941 346 TGYTGFIHNVLYEN 359 (405)
T ss_pred CCccceeCHHHHHh
Confidence 99999999876543
No 56
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.76 E-value=1.6e-17 Score=175.68 Aligned_cols=162 Identities=22% Similarity=0.352 Sum_probs=124.5
Q ss_pred eEEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEE--cCCccHHHHHH
Q 003589 602 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRT--LGDWTRQLRTV 677 (808)
Q Consensus 602 ~~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~--~g~~T~~L~~~ 677 (808)
.++|.+++.+++++..++++.|.. +.++||||+.|+.|. ...+|||++|.|. ++.++|+|+. .|..|..+.++
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 378999999999999999998765 689999999999998 3799999999986 4555665555 78888888765
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhc--cc--------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--KA-------- 747 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~--~~-------- 747 (808)
+ .++.+.|.||||++.......+++++||||+|++|++++++++.++. ..
T Consensus 86 --------k------------~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~ 145 (252)
T COG0543 86 --------K------------EGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGAR 145 (252)
T ss_pred --------c------------CCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEecc
Confidence 1 24789999999999864434555999999999999999999999854 11
Q ss_pred -cc-hHHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHH
Q 003589 748 -IE-EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 795 (808)
Q Consensus 748 -~~-~~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~ 795 (808)
.. ..+.+|+.++.+. ..+++++ ++ |.|.+|+|+.+....
T Consensus 146 ~~~dl~~~~el~~~~~~---~~~~~~~---~~---~~G~~G~v~~~~~~~ 186 (252)
T COG0543 146 TAKDLLLLDELEELAEK---EVHPVTD---DG---WKGRKGFVTTDVLKE 186 (252)
T ss_pred ChhhcccHHHHHHhhcC---cEEEEEC---CC---CCccCcceeHHHHhh
Confidence 11 1256788887754 2344444 55 999999995444443
No 57
>PLN02252 nitrate reductase [NADPH]
Probab=99.76 E-value=1.5e-17 Score=201.69 Aligned_cols=178 Identities=15% Similarity=0.222 Sum_probs=135.7
Q ss_pred hccceeEEEEEEEEecCCEEEEEEEcCCC---cccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc-----
Q 003589 597 RSSIKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL----- 667 (808)
Q Consensus 597 r~~~~~~~i~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~----- 667 (808)
...+..++|++++.+++++..|+|..|.. +.++||||++|+++..+....||||++|.++ ++.++|+||.+
T Consensus 631 p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~ 710 (888)
T PLN02252 631 PREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVH 710 (888)
T ss_pred cCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEecccc
Confidence 34567899999999999999999998754 5789999999999755555789999999985 57999999987
Q ss_pred ------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCC--------C--CCCCCeEEEEEecccH
Q 003589 668 ------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQ--------D--YKEYEVVLLVGLGIGA 731 (808)
Q Consensus 668 ------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~--------~--~~~~~~vllIagGiGI 731 (808)
|..|+.|.++ + .|+.|.|.||+|.+.. + ....++++|||||+||
T Consensus 711 ~~~p~gG~~S~~L~~L--------~------------vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGI 770 (888)
T PLN02252 711 PKFPNGGLMSQYLDSL--------P------------IGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGI 770 (888)
T ss_pred CccCCCCchhhHHhcC--------C------------CCCEEEEecCccceeecccceeeeccccccCceEEEEecceeh
Confidence 5566666321 2 3589999999998632 1 1235789999999999
Q ss_pred HHHHHHHHHHHHhccccc-------------hHHHHHHHHhhhcCCC--EEEEEEcCCC-CCCccccccccccCHHHHHH
Q 003589 732 TPMISIVKDIVNNMKAIE-------------EEEENDLENGRDTGVN--TTIIIIDNNY-EPFFFWTQKKGPIQDKKSIL 795 (808)
Q Consensus 732 TP~lsil~~l~~~~~~~~-------------~~~~~eL~~l~~~~~~--~~i~vt~~~~-~~~~~w~g~~G~v~~~~~~~ 795 (808)
||+++++++++....... ..+.+||.++++++++ .++|+++++. +. |.|.+|+|+++++..
T Consensus 771 TPi~silr~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~---w~g~~GrV~~~ll~~ 847 (888)
T PLN02252 771 TPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREG---WKYSVGRVTEAMLRE 847 (888)
T ss_pred hHHHHHHHHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCC---CCCcCCcCCHHHHHH
Confidence 999999999986532111 1278999999887643 3445555443 56 999999999987654
Q ss_pred hh
Q 003589 796 LL 797 (808)
Q Consensus 796 ~~ 797 (808)
.+
T Consensus 848 ~l 849 (888)
T PLN02252 848 HL 849 (888)
T ss_pred hc
Confidence 43
No 58
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.75 E-value=5.2e-18 Score=169.08 Aligned_cols=151 Identities=18% Similarity=0.275 Sum_probs=130.7
Q ss_pred CCcCHHHHHHHHHhHcCC-CCceEehhhccccccCCCCCHHHHHHHHHHHHcccCCCCCc-ccHHHHHHHHHHhccCCh-
Q 003589 165 GGAGWANVEKRFDEITAS-TNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDT-ITKDQLREFWDQISDQSF- 241 (808)
Q Consensus 165 ~~~~~~~l~~~F~~lD~d-~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~~~G~-I~~~EF~~~~~~l~~~~~- 241 (808)
+..+++.+..+|.++|.+ ++|.|+.+||..+.... .+.+.+++++. ++.++ +|. |+|+||+..+..+.....
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~--~Np~~~rI~~~-f~~~~--~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA--LNPLADRIIDR-FDTDG--NGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh--cCcHHHHHHHH-HhccC--CCCccCHHHHHHHHhhhcCCccH
Confidence 356888999999999998 99999999999998554 35788999995 66666 555 999999999999876655
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCcccc
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSV 321 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~~ 321 (808)
++|++.+|++||.|++|+|+.+|+.+++......+... .+++.+++++.+|.++|.|+||+|+++||+..+.+.|....
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~ 181 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLE 181 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHH
Confidence 55999999999999999999999999998666544333 57889999999999999999999999999999999998753
No 59
>PRK05802 hypothetical protein; Provisional
Probab=99.75 E-value=2.6e-17 Score=179.72 Aligned_cols=125 Identities=23% Similarity=0.369 Sum_probs=103.6
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCC---cccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRT 676 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~ 676 (808)
+.++|++++.+++++..++|+.|.. ..++|||||+|+++..+.+..|||||+++| +++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 5688999999999999999998754 347999999999986666678999999987 468899999999999988853
Q ss_pred HhhhccCCCCCCCcccccccCCCCCEEEEecccCC--CCCC---CCCCCeEEEEEecccHHHHHHHHHHHHHhc
Q 003589 677 VFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGA--PAQD---YKEYEVVLLVGLGIGATPMISIVKDIVNNM 745 (808)
Q Consensus 677 ~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~--~~~~---~~~~~~vllIagGiGITP~lsil~~l~~~~ 745 (808)
+ + .|+++.|.||||+ |... ....+++|+|||||||||+++++++++++.
T Consensus 145 l--------~------------~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~ 198 (320)
T PRK05802 145 L--------N------------KGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG 198 (320)
T ss_pred C--------C------------CCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC
Confidence 2 2 2589999999976 3321 123568999999999999999999998764
No 60
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.75 E-value=3.6e-17 Score=172.64 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=100.9
Q ss_pred CEEEEEEEcC-CCcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEEcCC-------ccHHHHHHhhhccCCC
Q 003589 614 NVLALHMSKP-DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGD-------WTRQLRTVFSEVCRPP 685 (808)
Q Consensus 614 ~v~~l~l~~p-~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g~-------~T~~L~~~~~~~~~~~ 685 (808)
++.+|+++.+ ..+.|+||||+.|.++. ....|||||+|.|.++.++|+||..++ .|..|.+.+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~------- 87 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHA------- 87 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCC-------
Confidence 5999999987 57889999999999764 346899999999988899999999754 566665432
Q ss_pred CCCCcccccccCCCCCEEEEecccCC-CCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcc----------cc--chHH
Q 003589 686 PNGISGLLRAEGHNNPEVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK----------AI--EEEE 752 (808)
Q Consensus 686 ~~G~s~~l~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~----------~~--~~~~ 752 (808)
+.|++|.|.||.|. +.. ....+++|||||||||||++||++++..+.. +. +..|
T Consensus 88 ------------~~Gd~v~i~gp~gg~F~~-~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~l~~g~r~~~~d~~~ 154 (245)
T cd06200 88 ------------PIGASVALRLRENPGFHL-PDDGRPLILIGNGTGLAGLRSHLRARARAGRHRNWLLFGERQAAHDFFC 154 (245)
T ss_pred ------------CCCCEEEEEecCCCcccC-CCCCCCEEEEecCcChHHHHHHHHHHHhccCCCeEEEEecCCccccHhH
Confidence 13689999998764 543 2345789999999999999999999876531 11 1237
Q ss_pred HHHHHHhhhcCCC
Q 003589 753 ENDLENGRDTGVN 765 (808)
Q Consensus 753 ~~eL~~l~~~~~~ 765 (808)
.+|+.++.+.+.+
T Consensus 155 ~~el~~~~~~~~~ 167 (245)
T cd06200 155 REELEAWQAAGHL 167 (245)
T ss_pred HHHHHHHHHCCCc
Confidence 7899988877665
No 61
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.74 E-value=8.7e-20 Score=166.87 Aligned_cols=100 Identities=39% Similarity=0.817 Sum_probs=7.1
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCC--CCeeeeeEeeecCCCCeEEEEEEEcCCccHHHHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTV 677 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~--~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~~~ 677 (808)
.++++++++.+++++++|+++.|.. ++|+||||++|++|..+ .+|||||||+|+|+++.++++||..||||++|.+.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 4567889999999999999999886 99999999999999999 56999999999999999999999999999999988
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCC
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAP 712 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~ 712 (808)
+.+.... .....++.||||||.+
T Consensus 82 ~~~~~~~------------~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESPSK------------QGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ---------------------------TTSTTSHH
T ss_pred Hhhhccc------------CCCceEEEEECCCCCC
Confidence 6542100 1135789999999974
No 62
>PRK05713 hypothetical protein; Provisional
Probab=99.74 E-value=2.6e-17 Score=179.90 Aligned_cols=171 Identities=16% Similarity=0.249 Sum_probs=125.6
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCCcccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc--CCccHHHHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 677 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~--g~~T~~L~~~ 677 (808)
.+++|++++.++++++.|+|+.+..+.|+||||+.|.++.. .+|||||+|.|. ++.++|+||.. |.+|..|.+
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~~---~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAGG---VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCCC---cccccccCcCCCCCCeEEEEEEEcCCCccchhhhc-
Confidence 46899999999999999999987788999999999998642 589999999985 57899999854 567776632
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccCCC-CCCCC-CCCeEEEEEecccHHHHHHHHHHHHHhccccc------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAP-AQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------ 749 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~-~~~~~-~~~~vllIagGiGITP~lsil~~l~~~~~~~~------ 749 (808)
+ + .|++|.|.||+|.+ ..+.. ..+++|||||||||||++||++++++.....+
T Consensus 168 l-------~------------~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l~~g 228 (312)
T PRK05713 168 L-------Q------------VGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHL 228 (312)
T ss_pred C-------C------------CCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEE
Confidence 1 2 35899999999853 22222 45789999999999999999999987643222
Q ss_pred ------hHHHHHHHHhhhcCCCEEE-EEEcC------------CCCCCccccccccccCHHHHH
Q 003589 750 ------EEEENDLENGRDTGVNTTI-IIIDN------------NYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 750 ------~~~~~eL~~l~~~~~~~~i-~vt~~------------~~~~~~~w~g~~G~v~~~~~~ 794 (808)
..+.+||.++++++++..+ ++.++ +....+|-||..+.|+.....
T Consensus 229 ~r~~~d~~~~~el~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vyiCGp~~mv~~~~~~ 292 (312)
T PRK05713 229 ARDSAGHYLAEPLAALAGRHPQLSVELVTAAQLPAALAELRLVSRQTMALLCGSPASVERFARR 292 (312)
T ss_pred cCchHHhhhHHHHHHHHHHCCCcEEEEEECcchhhhhhhccCCCCCeEEEEeCCHHHHHHHHHH
Confidence 1267889888877767333 33321 111234667777777665444
No 63
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.72 E-value=1.2e-16 Score=170.64 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=112.3
Q ss_pred CCEEEEEEEcC--CCcccCCCCEEEEEeccCCCCeeeeeEeeecCCC--CeEEEEEEEc-----------CCccHHHHHH
Q 003589 613 GNVLALHMSKP--DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD--DYLSVHIRTL-----------GDWTRQLRTV 677 (808)
Q Consensus 613 ~~v~~l~l~~p--~~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~--~~l~l~Ir~~-----------g~~T~~L~~~ 677 (808)
.++.+|+|..| ..+.|+||||+.|.+|. ....|||||+|.|++ +.++|+||.. |..|..|.++
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~l 92 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGL 92 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhC
Confidence 47999999998 57889999999999875 346899999999854 8999999987 6667766532
Q ss_pred hhhccCCCCCCCcccccccCCCCCEEEEecccC-CCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHh----c-------
Q 003589 678 FSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN----M------- 745 (808)
Q Consensus 678 ~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG-~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~----~------- 745 (808)
+ .|+.+.|.||+| .+..+....+++|||||||||||++||+++++.. .
T Consensus 93 --------k------------~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l 152 (267)
T cd06182 93 --------Q------------LGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWL 152 (267)
T ss_pred --------C------------CCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEE
Confidence 2 358999999999 7776444467899999999999999999999862 1
Q ss_pred ----cc--cchHHHHHHHHhhhcCCCEE-EEEEcCCCCCCccccccccccCHHH
Q 003589 746 ----KA--IEEEEENDLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKK 792 (808)
Q Consensus 746 ----~~--~~~~~~~eL~~l~~~~~~~~-i~vt~~~~~~~~~w~g~~G~v~~~~ 792 (808)
+. .+..+.+||.++.+.+.+.. +++.+++. . +..|+|++.+
T Consensus 153 ~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~-~-----~~~~~v~~~l 200 (267)
T cd06182 153 FFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQ-A-----EPKVYVQDKL 200 (267)
T ss_pred EEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCC-C-----CCceehHHHH
Confidence 11 12237788988887655533 33333322 2 2356776543
No 64
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.72 E-value=1.1e-16 Score=180.68 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=120.8
Q ss_pred eeEEEEEEEEec-----CCEEEEEEEcCC-CcccCCCCEEEEEeccC----CCCeeeeeEeeecCCC-----CeEEEEEE
Q 003589 601 KAVSIQKVAVYP-----GNVLALHMSKPD-RFRYKSGQYMFVNCAAV----SPFEWHPFSITSAPDD-----DYLSVHIR 665 (808)
Q Consensus 601 ~~~~i~~v~~l~-----~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~----~~~~~hPFSIas~p~~-----~~l~l~Ir 665 (808)
..++|+.++.++ +++.+|+|+.+. .+.|+||||+.|.+|.. .+..+|||||+|.|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 457888999884 499999999876 68899999999998752 2346899999998742 47999999
Q ss_pred Ec----------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCC-CCCCCCeEEEEEecccHHHH
Q 003589 666 TL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQ-DYKEYEVVLLVGLGIGATPM 734 (808)
Q Consensus 666 ~~----------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~-~~~~~~~vllIagGiGITP~ 734 (808)
.. |..|+.|.+ + + .|++|.|.||||.++. +.....++|||||||||||+
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~-l-------k------------~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~ 282 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCD-L-------K------------KGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPM 282 (411)
T ss_pred EEEecCCCCcCcccchhHHhc-C-------C------------CcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHH
Confidence 86 445666654 2 2 3589999999998553 22234689999999999999
Q ss_pred HHHHHHHHHhcc---ccc------------hHHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHH
Q 003589 735 ISIVKDIVNNMK---AIE------------EEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 735 lsil~~l~~~~~---~~~------------~~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
+||++++..... ..+ ..+.+||.++.+..++..+.+++ +.+ +.+|+|++.+.+
T Consensus 283 ~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~~~sr-~~~------~~~g~V~d~l~~ 350 (411)
T TIGR03224 283 RAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDINFAFSR-TPE------QPKRYVQDAIRE 350 (411)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEEEEecc-CCc------cCcccHhhHHHH
Confidence 999999875311 111 12678888887766654443333 222 347888876544
No 65
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.71 E-value=6.5e-17 Score=157.97 Aligned_cols=138 Identities=16% Similarity=0.320 Sum_probs=117.5
Q ss_pred CcCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCC--
Q 003589 166 GAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS-- 240 (808)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~-- 240 (808)
.++..++++.|+.+|.|++|+|+..|+..++ |..+ ++..+..+++. .|.++ +|.|+++||..++.......
T Consensus 4 ~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~-~D~dg--~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKE-IDLDG--DGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHH-hCCCC--CCeEcHHHHHHHHHhhhccccc
Confidence 3566889999999999999999999999987 7777 78888999985 66676 99999999999999775442
Q ss_pred ---hHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 241 ---FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 241 ---~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
..++++.+|++||+|+||+||.+||+.+|+....... .+.++.+++++|.|+||.|+|+||.++|..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~--------~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT--------DEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC--------HHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2459999999999999999999999999985443221 455667999999999999999999999975
No 66
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.70 E-value=2.3e-16 Score=162.57 Aligned_cols=140 Identities=16% Similarity=0.240 Sum_probs=106.1
Q ss_pred EEEEecCCEEEEEEEcCCCc---ccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEcCC---ccHHHHHHhh
Q 003589 607 KVAVYPGNVLALHMSKPDRF---RYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGD---WTRQLRTVFS 679 (808)
Q Consensus 607 ~v~~l~~~v~~l~l~~p~~~---~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~g~---~T~~L~~~~~ 679 (808)
+++.+++++++++|+.|... .|+||||+.|++|.. ..|||||+|.|.+ +.++|+||..++ .|..|...+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~---~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~- 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNG---LVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL- 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCC---CceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC-
Confidence 56788999999999998753 899999999999862 6799999999865 899999998753 465554432
Q ss_pred hccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccc---------cch
Q 003589 680 EVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------IEE 750 (808)
Q Consensus 680 ~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~---------~~~ 750 (808)
+ .|+++.|.||+|.+... ...++++|||||+||||++|+++++....++ .+.
T Consensus 78 ------~------------~Gd~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~~~~v~l~~~~r~~~~ 138 (211)
T cd06185 78 ------R------------VGDELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAARGADFELHYAGRSRED 138 (211)
T ss_pred ------C------------CCCEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhCCCCEEEEEEeCCCcc
Confidence 2 35899999999988753 3457899999999999999999998864221 111
Q ss_pred -HHHHHHHHhhhcCCCEEEEEE
Q 003589 751 -EEENDLENGRDTGVNTTIIII 771 (808)
Q Consensus 751 -~~~~eL~~l~~~~~~~~i~vt 771 (808)
.+.+||.++. ..+..++++
T Consensus 139 ~~~~~~l~~~~--~~~~~~~~~ 158 (211)
T cd06185 139 AAFLDELAALP--GDRVHLHFD 158 (211)
T ss_pred hhHHHHHhhhc--CCcEEEEEC
Confidence 2567777766 334444443
No 67
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=99.69 E-value=3.1e-17 Score=142.35 Aligned_cols=99 Identities=71% Similarity=1.205 Sum_probs=76.4
Q ss_pred ccccCchhhHHHHhhhhhhhccCCC-cCHHHHHHHHHhHcCCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccCCC
Q 003589 142 RFDRNKSAAAYALKGLKFISKTDGG-AGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQ 220 (808)
Q Consensus 142 ~~dr~~~~a~~al~~l~~i~~~~~~-~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~~ 220 (808)
++||++|+|.+||++|+||.++... +.|.+|+++|+++.. ||.|++++|++|+||++ +++|+.+||++|.++.+..
T Consensus 1 rldRt~S~A~~ALkGLrFIskt~~~~~~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~d-SkeFA~eLFdALaRrr~i~ 77 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISKTTGGADGWKEVEKRFDKLAK--DGLLPRSDFGECIGMKD-SKEFAGELFDALARRRGIK 77 (100)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S--HHHHHHHHHHHHHHTT--
T ss_pred CCCcchhHHHHHHhcccceecCCCCccCHHHHHHHHHHhCc--CCcccHHHHHHhcCCcc-cHHHHHHHHHHHHHhcCCc
Confidence 5799999999999999999988765 489999999999995 99999999999999998 9999999999999999887
Q ss_pred CCcccHHHHHHHHHHhccCChHH
Q 003589 221 GDTITKDQLREFWDQISDQSFDS 243 (808)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~de 243 (808)
.+.|+.+|+.++|.+|.++++|.
T Consensus 78 ~~~I~k~eL~efW~qisD~sFDs 100 (100)
T PF08414_consen 78 GDSITKDELKEFWEQISDQSFDS 100 (100)
T ss_dssp SSEE-HHHHHHHHHHHH---HHH
T ss_pred cCCcCHHHHHHHHHHhhccCCCC
Confidence 89999999999999999988763
No 68
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.69 E-value=7.3e-16 Score=166.57 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=112.5
Q ss_pred cceeEEEEEEEEec----CCEEEEEEEcCC-------CcccCCCCEEEEEeccCCCCeeeeeEeeecCCCCeEEEEEEE-
Q 003589 599 SIKAVSIQKVAVYP----GNVLALHMSKPD-------RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRT- 666 (808)
Q Consensus 599 ~~~~~~i~~v~~l~----~~v~~l~l~~p~-------~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~- 666 (808)
.+.++++++++.++ +++..|+|+.|. ...|+||||+.|..++.. ..|||||+|.|+++.++|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~--~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSD--VPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCC--CCceEecCCCCCCCeEEEEEEeC
Confidence 45788999999988 599999999876 467999999999865432 5799999999988899999998
Q ss_pred -cCCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEe-cccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHh
Q 003589 667 -LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLID-GPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 744 (808)
Q Consensus 667 -~g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~-GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 744 (808)
.|..|..|.+ + + .|+.|.+. +|+|.|..+ ...+++|||||||||||++||+++....
T Consensus 122 ~~G~~S~~L~~-l-------~------------~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~~ 180 (289)
T cd06201 122 PGGLCSGYLHG-L-------K------------PGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAAR 180 (289)
T ss_pred CCccchhhHhh-C-------C------------CcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhcc
Confidence 4667777764 2 2 35788887 578888753 4457899999999999999999986322
Q ss_pred --------cccc--chHHHHHHHHhhhcCCCE
Q 003589 745 --------MKAI--EEEEENDLENGRDTGVNT 766 (808)
Q Consensus 745 --------~~~~--~~~~~~eL~~l~~~~~~~ 766 (808)
.++. +..+.+||.++.+.+++.
T Consensus 181 ~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~ 212 (289)
T cd06201 181 RPMHLYWGGRDPASDFLYEDELDQYLADGRLT 212 (289)
T ss_pred CCEEEEEEecCcccchHHHHHHHHHHHcCCCc
Confidence 1222 234788999988776653
No 69
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.69 E-value=4.4e-16 Score=189.40 Aligned_cols=161 Identities=23% Similarity=0.386 Sum_probs=125.0
Q ss_pred EEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHHHhhh
Q 003589 603 VSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 680 (808)
Q Consensus 603 ~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~~~~~ 680 (808)
++|++++.++++++.|+|..|.. ..++||||+.|+++..+ ++|||||++.| +++.++|+||..|..|..|.++
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l--- 76 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL--- 76 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC---
Confidence 46888999999999999998753 57999999999997544 57999999987 4678999999999999988642
Q ss_pred ccCCCCCCCcccccccCCCCCEE-EEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc---------h
Q 003589 681 VCRPPPNGISGLLRAEGHNNPEV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------E 750 (808)
Q Consensus 681 ~~~~~~~G~s~~l~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------~ 750 (808)
++ |+.+ .|.||||.+... ...++++|||||+||||++++++++.++..+.. .
T Consensus 77 -----~~------------Gd~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~~~v~l~~g~r~~~~ 138 (752)
T PRK12778 77 -----NE------------GDYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAGNRVITILGGRSKEL 138 (752)
T ss_pred -----CC------------CCEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCCCeEEEEeccCCHHH
Confidence 22 5889 799999998753 345799999999999999999999987643211 1
Q ss_pred -HHHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 751 -EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 751 -~~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
.+.+||.++..+ ++++. +++ |.|.+|+|++.+.+.+
T Consensus 139 l~~~~el~~~~~~-----~~~~t--~dg---~~g~~G~v~~~l~~~~ 175 (752)
T PRK12778 139 IILEDEMRESSDE-----VIIMT--DDG---SYGRKGLVTDGLEEVI 175 (752)
T ss_pred hhhHHHHHhhcCe-----EEEEE--CCC---CCCCcccHHHHHHHHh
Confidence 256777766532 23332 244 7899999998765554
No 70
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.65 E-value=3.9e-15 Score=183.03 Aligned_cols=171 Identities=15% Similarity=0.182 Sum_probs=126.6
Q ss_pred cceeEEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHH
Q 003589 599 SIKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRT 676 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~ 676 (808)
.+..++|++++.++++++.|+|..|.. ..++||||+.|.++..+ +.|||||++.| +++.++|+||..|..|..|.+
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~ 724 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR 724 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc
Confidence 467889999999999999999998764 47999999999986444 57999999987 467899999999887766643
Q ss_pred HhhhccCCCCCCCcccccccCCCCCEEE-EecccCCCCCCC--CCCCeEEEEEecccHHHHHHHHHHHHHhccc------
Q 003589 677 VFSEVCRPPPNGISGLLRAEGHNNPEVL-IDGPYGAPAQDY--KEYEVVLLVGLGIGATPMISIVKDIVNNMKA------ 747 (808)
Q Consensus 677 ~~~~~~~~~~~G~s~~l~~~~~~~~~v~-i~GPyG~~~~~~--~~~~~vllIagGiGITP~lsil~~l~~~~~~------ 747 (808)
+ + .|+.+. |.||+|.+.... ...+++||||||+||||++++++++.+....
T Consensus 725 l--------k------------~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g~~V~li~G 784 (944)
T PRK12779 725 M--------A------------IGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLGNHVTLISG 784 (944)
T ss_pred C--------C------------CcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCCCCEEEEEE
Confidence 2 2 358885 999999986311 2236899999999999999999998875422
Q ss_pred ---cchHH-HHH---HHHhhhcCCC-EEEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 748 ---IEEEE-END---LENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 748 ---~~~~~-~~e---L~~l~~~~~~-~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
.+.++ .++ |.++++..++ ..++++++ ++ |.|.+|+|++.+.+.+
T Consensus 785 ~Rs~edl~~~del~~L~~la~~~~~~~~v~~ttd--dg---s~G~~G~Vt~~l~~ll 836 (944)
T PRK12779 785 FRAKEFLFWTGDDERVGKLKAEFGDQLDVIYTTN--DG---SFGVKGFVTGPLEEML 836 (944)
T ss_pred eCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEEec--CC---CCCCccccChHHHHHH
Confidence 11223 233 4555555554 44445543 34 7799999998765544
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.62 E-value=7e-15 Score=182.29 Aligned_cols=163 Identities=18% Similarity=0.288 Sum_probs=124.3
Q ss_pred EEEEEEEEecCCEEEEEEEcCC-CcccCCCCEEEEEeccCCCCeeeeeEeeecC-CCCeEEEEEEEcCCccHHHHHHhhh
Q 003589 603 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 680 (808)
Q Consensus 603 ~~i~~v~~l~~~v~~l~l~~p~-~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~~~~~~ 680 (808)
++|++.+.++++++.+++..|. ...++|||||.|+++..+ +++||||++.+ +++.++|+|+..|..|+.|...+
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~l-- 77 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQALGKTTREMMTKF-- 77 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcC--
Confidence 3688889999999999999886 457999999999997543 57999999876 46789999999999999886433
Q ss_pred ccCCCCCCCcccccccCCCCCEE-EEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccccc---------h
Q 003589 681 VCRPPPNGISGLLRAEGHNNPEV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE---------E 750 (808)
Q Consensus 681 ~~~~~~~G~s~~l~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~~~---------~ 750 (808)
++ |+.+ .+.||+|.+.. ....+++||||||+||||++|+++.+.+...+.. .
T Consensus 78 -----k~------------Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g~~v~li~g~R~~~~ 139 (1006)
T PRK12775 78 -----KA------------GDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAGARTTGIIGFRNKDL 139 (1006)
T ss_pred -----CC------------CCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCCCcEEEEEeCCChHH
Confidence 22 5788 79999999864 3446789999999999999999999887643221 1
Q ss_pred H-HHHHHHHhhhcCCCEEEEEEcCCCCCCccccccccccCHHHHHHhh
Q 003589 751 E-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 797 (808)
Q Consensus 751 ~-~~~eL~~l~~~~~~~~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~~ 797 (808)
+ +.+|+..+.. + ++++.+ ++ |.|.+|+|++.+.+.+.
T Consensus 140 l~~~del~~~~~---~--~~v~td--dg---s~G~~G~vt~~l~~~l~ 177 (1006)
T PRK12775 140 VFWEDKFGKYCD---D--LIVCTD--DG---SYGKPGFVTAALKEVCE 177 (1006)
T ss_pred cccHHHHHhhcC---c--EEEEEC--CC---CCCCCCChHHHHHHHhc
Confidence 1 4566655432 1 344432 34 77999999987766553
No 72
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.62 E-value=2.6e-15 Score=149.78 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=120.5
Q ss_pred CHHHHHHHHHhHcCCCCceEehhhcccccc----CCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHH
Q 003589 168 GWANVEKRFDEITASTNGVLPRARFGECIG----MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDS 243 (808)
Q Consensus 168 ~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg----~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de 243 (808)
++++..+-|..- ..+|.++.++|..++. ... ++.+++.+|++ +|.++ +|.|+|.||+.+++.+.++..++
T Consensus 27 ei~~~Yr~Fk~~--cP~G~~~~~~F~~i~~~~fp~gd-~~~y~~~vF~~-fD~~~--dg~i~F~Efi~als~~~rGt~ee 100 (193)
T KOG0044|consen 27 EIQQWYRGFKNE--CPSGRLTLEEFREIYASFFPDGD-ASKYAELVFRT-FDKNK--DGTIDFLEFICALSLTSRGTLEE 100 (193)
T ss_pred HHHHHHHHhccc--CCCCccCHHHHHHHHHHHCCCCC-HHHHHHHHHHH-hcccC--CCCcCHHHHHHHHHHHcCCcHHH
Confidence 334445555442 2699999999998873 233 77899999996 66666 99999999999999999999999
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhccC---CccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCccc
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSASAN---KLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~---~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~ 320 (808)
+++.+|++||.|+||+||.+|+-++++.....+ ..+..++..++.++.+|+++|.|+||.|+++||....+..|+.+
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~ 180 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSIL 180 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHH
Confidence 999999999999999999999999997432211 11222455788899999999999999999999999999998876
Q ss_pred c
Q 003589 321 V 321 (808)
Q Consensus 321 ~ 321 (808)
.
T Consensus 181 ~ 181 (193)
T KOG0044|consen 181 R 181 (193)
T ss_pred H
Confidence 3
No 73
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.61 E-value=1.1e-14 Score=183.99 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=131.2
Q ss_pred ccceeEEEEEEE---EecCCEEEEEEEcCCC---cccCCCCEEEEEeccCCCCeeeeeEeeecCC-CCeEEEEEEEc-CC
Q 003589 598 SSIKAVSIQKVA---VYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL-GD 669 (808)
Q Consensus 598 ~~~~~~~i~~v~---~l~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~-~~~l~l~Ir~~-g~ 669 (808)
..|.+++|.+++ .+++++..++|..|.. +.|+|||||.|+++..+.-..|+||++|.|+ .+.++|+||.. |.
T Consensus 912 ~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~ 991 (1167)
T PTZ00306 912 DKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGT 991 (1167)
T ss_pred CceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCCh
Confidence 457788999887 4588999999988753 4699999999998744434579999999996 46899999974 66
Q ss_pred ccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCC----------CCCCCCCCeEEEEEecccHHHHHHHHH
Q 003589 670 WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAP----------AQDYKEYEVVLLVGLGIGATPMISIVK 739 (808)
Q Consensus 670 ~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~----------~~~~~~~~~vllIagGiGITP~lsil~ 739 (808)
+|..|..+ + +|++|.|.||+|.+ ..+....+++|||||||||||++||++
T Consensus 992 ~S~~L~~l--------~------------~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~ 1051 (1167)
T PTZ00306 992 LKEWISAL--------R------------PGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIR 1051 (1167)
T ss_pred hHHHHhhC--------C------------CCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHH
Confidence 77777432 2 35899999998842 112234578999999999999999999
Q ss_pred HHHHhcc--cc-c------------hHHHHHHHHhhhcCCC-E-EEEEEcCCCCCCccccccccccCHHHHHHh
Q 003589 740 DIVNNMK--AI-E------------EEEENDLENGRDTGVN-T-TIIIIDNNYEPFFFWTQKKGPIQDKKSILL 796 (808)
Q Consensus 740 ~l~~~~~--~~-~------------~~~~~eL~~l~~~~~~-~-~i~vt~~~~~~~~~w~g~~G~v~~~~~~~~ 796 (808)
+++++.. .. + ..|.+||.++++++++ + ..++++++.+. |.+..|+|++..+...
T Consensus 1052 ~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~---w~~~~G~i~~~~l~~~ 1122 (1167)
T PTZ00306 1052 AALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEG---WTDGVGFVDRALLQSA 1122 (1167)
T ss_pred HHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcc---cCCCCCCCCHHHHHHh
Confidence 9987531 11 1 1378899999887765 3 44455655666 9999999998765544
No 74
>PTZ00183 centrin; Provisional
Probab=99.61 E-value=4.5e-15 Score=145.21 Aligned_cols=143 Identities=11% Similarity=0.227 Sum_probs=117.2
Q ss_pred CCCcCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHh-ccC
Q 003589 164 DGGAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI-SDQ 239 (808)
Q Consensus 164 ~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l-~~~ 239 (808)
....+.+++++.|..+|.|++|.|+.+||..++ |... +...+..+|.. .|.++ +|.|+++||..++... ...
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~-~~~~~~~l~~~-~d~~~--~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEP-KKEEIKQMIAD-VDKDG--SGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHH-hCCCC--CCcEeHHHHHHHHHHHhcCC
Confidence 345677889999999999999999999998877 4555 66778889984 66666 9999999999988765 344
Q ss_pred ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCc
Q 003589 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (808)
Q Consensus 240 ~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~ 318 (808)
..++.++.+|+.+|+|++|+|+.+||..++..... .++ ++.+..+|..+|.|++|.|+++||..++...|.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TIT------DEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCC------HHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 56778999999999999999999999999974321 122 234555899999999999999999999998774
No 75
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.58 E-value=1.6e-14 Score=151.69 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=97.1
Q ss_pred EEEEEEecCCEEEEEEEcCCC---cccCCCCEEEEEeccCC-------------------CCeeeeeEeeecC-CCCeEE
Q 003589 605 IQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS-------------------PFEWHPFSITSAP-DDDYLS 661 (808)
Q Consensus 605 i~~v~~l~~~v~~l~l~~p~~---~~~~pGQyv~l~~p~~~-------------------~~~~hPFSIas~p-~~~~l~ 661 (808)
|++++.+++++++|+|+.|.. ..|.||||+.|.++..+ ....|+|||++.| ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 457888999999999998764 57899999999998643 4578999999986 578999
Q ss_pred EEEEEc---CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHH
Q 003589 662 VHIRTL---GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIV 738 (808)
Q Consensus 662 l~Ir~~---g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil 738 (808)
|.|+.. |..|+.+.++ + +|+.|.|.||+|.+... ...+++||||||+||||+++|+
T Consensus 81 ~~v~~~~~~G~~s~~l~~l--------~------------~Gd~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il 139 (235)
T cd06193 81 IDFVLHGDEGPASRWAASA--------Q------------PGDTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAIL 139 (235)
T ss_pred EEEEeCCCCCchHHHHhhC--------C------------CCCEEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHH
Confidence 999887 3456665321 2 35899999999999763 3567899999999999999999
Q ss_pred HHHHHh
Q 003589 739 KDIVNN 744 (808)
Q Consensus 739 ~~l~~~ 744 (808)
+++...
T Consensus 140 ~~~~~~ 145 (235)
T cd06193 140 EELPAD 145 (235)
T ss_pred HhCCCC
Confidence 988654
No 76
>PTZ00184 calmodulin; Provisional
Probab=99.58 E-value=1.5e-14 Score=139.68 Aligned_cols=139 Identities=17% Similarity=0.310 Sum_probs=113.5
Q ss_pred CCCcCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhc-cC
Q 003589 164 DGGAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQIS-DQ 239 (808)
Q Consensus 164 ~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~-~~ 239 (808)
...++++++++.|..+|.|++|.|+.+||..++ +... ..+.+..+|.. .|.++ +|.|+|+||+.++.... ..
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~-~d~~~--~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINE-VDADG--NGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC-CHHHHHHHHHh-cCcCC--CCcCcHHHHHHHHHHhccCC
Confidence 345677889999999999999999999999876 5555 66778889994 66666 89999999999987653 34
Q ss_pred ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 003589 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (808)
Q Consensus 240 ~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~ 314 (808)
..++.++.+|+.+|+|++|+|+.+||+.++.... ..++ ++.++.+++.+|.|++|+|+|+||..++.
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG--EKLT------DEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC--CCCC------HHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 5677899999999999999999999999997432 1122 23455588999999999999999998875
No 77
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=7.9e-14 Score=131.43 Aligned_cols=139 Identities=14% Similarity=0.305 Sum_probs=111.2
Q ss_pred CcCHHHHHHHHHhHcCCCCceEehhhcccc---ccCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHH-HhccCCh
Q 003589 166 GAGWANVEKRFDEITASTNGVLPRARFGEC---IGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWD-QISDQSF 241 (808)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~---lg~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~-~l~~~~~ 241 (808)
+++-++++..|+.+|.+++|+|+.+||..+ +|..+ .++.+.++..- .|+++ .|.|+|++|+..+. .++...+
T Consensus 29 ~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d-~dk~~--~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP-KKEEILKLLAD-VDKEG--SGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred HHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHh-hhhcc--CceechHHHHHHHHHHHhccCc
Confidence 345578999999999999999999999654 47766 55555555442 34444 89999999999955 5777789
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
.++++.+|+.+|.|++|.|+..+|+.++.....+ + .++.+..|++|+|.|+||.|+-+||..+|+..
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen--l------tD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN--L------TDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc--c------cHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 9999999999999999999999999998744322 1 23345558999999999999999999999864
No 78
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.41 E-value=4.7e-13 Score=125.95 Aligned_cols=119 Identities=24% Similarity=0.392 Sum_probs=88.4
Q ss_pred hhhhhHHHHHHhhhhh-hhhcccccccCccccCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCccccCCCCcc
Q 003589 408 LKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPY 486 (808)
Q Consensus 408 l~~n~~lill~~~Rn~-l~~L~~~~~l~~~vp~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~ 486 (808)
...|+++++++++||+ +.+++ ++|+|+.+.+|||+|+++++++++|++.|+...... ...
T Consensus 5 a~~~l~~~~~l~~R~~~l~~~~-------~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~------~~~------ 65 (125)
T PF01794_consen 5 AFALLPLVFLLGLRNSPLARLT-------GISFDRLLRFHRWLGRLAFFLALLHGVLYLINWLRF------GGW------ 65 (125)
T ss_pred HHHHHHHHHHHHHhhhHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhh------
Confidence 3568888888889985 34332 578999999999999999999999999998522110 000
Q ss_pred cCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 003589 487 FGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLL 558 (808)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll 558 (808)
......+.........+|+++++++.+++++|.+++||+. .||.|+++|++++++++++
T Consensus 66 --~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 66 --DWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred --chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 0011122334445567999999999999999999999543 6999999999998887653
No 79
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=125.92 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=115.0
Q ss_pred CCCccccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccccC----CCCCHHHHHHHHHHHH
Q 003589 139 PPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGM----NKDSKDFAVELFDALT 214 (808)
Q Consensus 139 ~~~~~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~----~~~~~~~~~~lF~~l~ 214 (808)
+|++||++++|.+..-+...+++..+....-+++.++|+.+|. ++|.|++.+|..+|+. .+ ..+.++..|+ ++
T Consensus 25 aF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~-~~Eel~~aF~-~f 101 (160)
T COG5126 25 AFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD-KEEELREAFK-LF 101 (160)
T ss_pred HHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC-cHHHHHHHHH-Hh
Confidence 3489999999999999988888887778888899999999998 8999999999999853 33 5788899999 57
Q ss_pred cccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 215 RRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 215 d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
|.|+ +|+|+.+|++.++..++....+++++.+++.+|+|+||+|+++||.+.+.
T Consensus 102 D~d~--dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 102 DKDH--DGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred CCCC--CceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 7777 99999999999999999999999999999999999999999999999875
No 80
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.36 E-value=6.6e-12 Score=116.10 Aligned_cols=145 Identities=19% Similarity=0.283 Sum_probs=116.6
Q ss_pred CHHHHHHHHHhHcCC-----C------CceEehhhccccccCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHh
Q 003589 168 GWANVEKRFDEITAS-----T------NGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (808)
Q Consensus 168 ~~~~l~~~F~~lD~d-----~------dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (808)
++-.+.++|..+..+ - .-+++.+...+.-.+++ +.+-+++.++ +.+|| .|.++|++|+.+++.+
T Consensus 26 dIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELke--npfk~ri~e~-FSeDG--~GnlsfddFlDmfSV~ 100 (189)
T KOG0038|consen 26 DILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKE--NPFKRRICEV-FSEDG--RGNLSFDDFLDMFSVF 100 (189)
T ss_pred HHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhc--ChHHHHHHHH-hccCC--CCcccHHHHHHHHHHH
Confidence 456688889888742 1 22455666555555554 4677888885 56677 9999999999999999
Q ss_pred ccCCh-HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 237 SDQSF-DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 237 ~~~~~-de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
++..+ +-++.-+|+.||-|+|++|..+++..+++.... +.++ .++.+-+++.+++|+|.|+||++++.||+.++.+
T Consensus 101 sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr-~eLs--~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 101 SEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR-DELS--DEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh-ccCC--HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 98765 568999999999999999999999999975443 3344 5667778899999999999999999999999999
Q ss_pred CCccc
Q 003589 316 APAQS 320 (808)
Q Consensus 316 ~p~~~ 320 (808)
.|+.+
T Consensus 178 aPDFl 182 (189)
T KOG0038|consen 178 APDFL 182 (189)
T ss_pred CcchH
Confidence 99986
No 81
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.33 E-value=1.1e-11 Score=116.27 Aligned_cols=134 Identities=13% Similarity=0.265 Sum_probs=112.8
Q ss_pred CcCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHH-HhccCCh
Q 003589 166 GAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWD-QISDQSF 241 (808)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~-~l~~~~~ 241 (808)
+.+++|+++.|..+|.|+||.|+++++...+ |... ++++++.++. ...|-|+|--|+.++- +++..++
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~-~d~elDaM~~-------Ea~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA-SDEELDAMMK-------EAPGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHH-------hCCCCeeHHHHHHHHHHHhcCCCH
Confidence 3578999999999999999999999999876 6666 7777887777 1279999999999876 4566678
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
++-+..+|++||.+++|.|..+.|+++|+..+. +. .++.++.+++.+-+|..|.|+|.+|..+|..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD--r~------~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD--RF------TDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc--cC------CHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 999999999999999999999999999984332 22 2345666999999999999999999999984
No 82
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.33 E-value=1.1e-11 Score=121.22 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=115.9
Q ss_pred CCCccccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccccCC---CC----CHHHHHHHHH
Q 003589 139 PPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMN---KD----SKDFAVELFD 211 (808)
Q Consensus 139 ~~~~~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~---~~----~~~~~~~lF~ 211 (808)
+|+.||.+++|.++..+...++.+.+....-+++..+++.+|.|++|.|+++||..++... .. +.+.+++.|+
T Consensus 13 ~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~ 92 (151)
T KOG0027|consen 13 AFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFR 92 (151)
T ss_pred HHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHH
Confidence 3478999999999999999999999888888999999999999999999999999998422 10 2347899999
Q ss_pred HHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 212 ALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 212 ~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
++|.++ +|.|+.+||..++..++....++++..+++.+|.|+||.|+++||.++|.
T Consensus 93 -~fD~d~--~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 93 -VFDKDG--DGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred -HHccCC--CCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 578887 99999999999999999999999999999999999999999999999885
No 83
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.30 E-value=8.8e-12 Score=133.52 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=120.9
Q ss_pred CCCCccccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccc----cCCCCCHHHHHHHHHHH
Q 003589 138 QPPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI----GMNKDSKDFAVELFDAL 213 (808)
Q Consensus 138 ~~~~~~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lF~~l 213 (808)
..+||+++.+++|+.+|++..+-.+ .++++.|+.+|.++.|+|+..+++.|+ |++. . .+.+-..+
T Consensus 439 tlrqR~~~vEeSAlk~Lrerl~s~~-------sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~L-P---Wr~L~~kl 507 (631)
T KOG0377|consen 439 TLRQRMGIVEESALKELRERLRSHR-------SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNL-P---WRLLRPKL 507 (631)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHhhh-------hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCC-c---HHHhhhhc
Confidence 3458999999999999998554333 359999999999999999999999998 4442 1 34444444
Q ss_pred HcccCCCCCcccHHHHHHHHHH--hccC----------ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccch
Q 003589 214 TRRRNIQGDTITKDQLREFWDQ--ISDQ----------SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNI 281 (808)
Q Consensus 214 ~d~d~~~~G~I~~~EF~~~~~~--l~~~----------~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~ 281 (808)
+..+. +|.+.|.+-...+.. +... .....|+.+|+.+|+|++|.||.+||+.++++..+..+....
T Consensus 508 a~~s~--d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~ 585 (631)
T KOG0377|consen 508 ANGSD--DGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAIS 585 (631)
T ss_pred cCCCc--CcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcC
Confidence 44333 788988887665431 1111 123568999999999999999999999999987776655544
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 282 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 282 ~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
++++-+ +-+.+|.|+||.|+++||.+..+-.
T Consensus 586 ~~~i~~----la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 586 DDEILE----LARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHH----HHHhhccCCCCcccHHHHHHHHhhh
Confidence 554555 4455799999999999999888744
No 84
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.29 E-value=1.4e-11 Score=111.21 Aligned_cols=92 Identities=28% Similarity=0.496 Sum_probs=75.1
Q ss_pred eEEEEEEEEecCCEEEEEEEcCC---CcccCCCCEEEEEeccCCCCeeeeeEeeecCCC-CeEEEEEEEc--CCccHHHH
Q 003589 602 AVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLR 675 (808)
Q Consensus 602 ~~~i~~v~~l~~~v~~l~l~~p~---~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~~-~~l~l~Ir~~--g~~T~~L~ 675 (808)
+++|++++.+++++..++|..|. .+.|.||||+.|+++..+...+|||||+|.|.+ +.++|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36899999999999999998874 356999999999999555568999999999964 5999999999 66788774
Q ss_pred HHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCC
Q 003589 676 TVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPA 713 (808)
Q Consensus 676 ~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~ 713 (808)
+ + + .|+.|.|.||+|.+.
T Consensus 81 ~-l-------~------------~Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 81 Q-L-------K------------PGDEVEIRGPYGNFT 98 (99)
T ss_dssp T-S-------C------------TTSEEEEEEEESSEE
T ss_pred h-C-------C------------CCCEEEEEEcccccC
Confidence 4 2 2 358999999999863
No 85
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.24 E-value=3e-11 Score=123.69 Aligned_cols=167 Identities=18% Similarity=0.309 Sum_probs=113.8
Q ss_pred EEEEEEEcCC--CcccCCCCEEEEEeccCC----C----------C---------------eeeeeEeeecCC-CCeEEE
Q 003589 615 VLALHMSKPD--RFRYKSGQYMFVNCAAVS----P----------F---------------EWHPFSITSAPD-DDYLSV 662 (808)
Q Consensus 615 v~~l~l~~p~--~~~~~pGQyv~l~~p~~~----~----------~---------------~~hPFSIas~p~-~~~l~l 662 (808)
+.+|.+..|+ ..+|+||-|+.|.+|.-. . | ..+.||++|.|+ .+.+.|
T Consensus 149 IKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~giI~~ 228 (410)
T COG2871 149 IKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKGIIKL 228 (410)
T ss_pred hhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcCeEEE
Confidence 4566777765 478999999999997520 0 1 137899999996 467888
Q ss_pred EEEEcCCccHHHHHHhhhccCCCCCCC-cccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHH
Q 003589 663 HIRTLGDWTRQLRTVFSEVCRPPPNGI-SGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDI 741 (808)
Q Consensus 663 ~Ir~~g~~T~~L~~~~~~~~~~~~~G~-s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l 741 (808)
-||..-.--. .....+|+ |++.. ..++|++|.|.||||.++.. +....+|+|+||.|.+|+.|.+-+.
T Consensus 229 NvRIAtPPp~---------~~~~PpG~mSSyi~-sLKpGDKvtisGPfGEfFaK-dtdaemvFigGGAGmapmRSHIfDq 297 (410)
T COG2871 229 NVRIATPPPR---------NPDAPPGQMSSYIW-SLKPGDKVTISGPFGEFFAK-DTDAEMVFIGGGAGMAPMRSHIFDQ 297 (410)
T ss_pred EEEeccCCCC---------CCCCCccceeeeEE-eecCCCeEEEeccchhhhhc-cCCCceEEEecCcCcCchHHHHHHH
Confidence 8887632000 00012232 22111 12467999999999998753 4456799999999999999999888
Q ss_pred HHhccccch-------------HHHHHHHHhhhcCCCEEEEEE-c-CCCCCCccccccccccCHHHHH
Q 003589 742 VNNMKAIEE-------------EEENDLENGRDTGVNTTIIII-D-NNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 742 ~~~~~~~~~-------------~~~~eL~~l~~~~~~~~i~vt-~-~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
+.+....+. .+.+|..+|+++++|.+.|+. + +-+++ +|+|.+|+|..+..+
T Consensus 298 L~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpED--nW~g~TgFihnv~~e 363 (410)
T COG2871 298 LKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPED--NWDGYTGFIHNVLYE 363 (410)
T ss_pred HHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcC--CcccchhHHHHHHHh
Confidence 876443332 266788899999999666543 3 32232 499999999887555
No 86
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.22 E-value=3.4e-11 Score=134.30 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=86.3
Q ss_pred CcccCCCCEEEEEeccCCCCeeeeeEeeecCC--CCeEEEEEEEc----------CCccHHHHHHhhhccCCCCCCCccc
Q 003589 625 RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGL 692 (808)
Q Consensus 625 ~~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~G~s~~ 692 (808)
..++.||||+.+..|. ..|+|||+|+|. .+.++++|+.. |-.|..|.+..
T Consensus 129 ~~~~~~gq~l~l~~~~----~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~-------------- 190 (360)
T cd06199 129 PARLTAEELLDLLRPL----QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRL-------------- 190 (360)
T ss_pred CCCCCHHHHHHhCcCC----CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcC--------------
Confidence 3578999999997442 569999999995 47899999865 44555554432
Q ss_pred ccccCCCCCEEEEeccc-CCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccc-------------cchHHHHHHHH
Q 003589 693 LRAEGHNNPEVLIDGPY-GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-------------IEEEEENDLEN 758 (808)
Q Consensus 693 l~~~~~~~~~v~i~GPy-G~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~-------------~~~~~~~eL~~ 758 (808)
+.|+.|.|.+|. |.|..+.....++|||||||||||++|++++....... .+..+.+||.+
T Consensus 191 -----~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~el~~ 265 (360)
T cd06199 191 -----KEGDTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQ 265 (360)
T ss_pred -----CCCCEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHHHHH
Confidence 135889998754 56765444457899999999999999999987654211 12247899998
Q ss_pred hhhcCCCE
Q 003589 759 GRDTGVNT 766 (808)
Q Consensus 759 l~~~~~~~ 766 (808)
+.+.+...
T Consensus 266 ~~~~~~~~ 273 (360)
T cd06199 266 WLKDGVLT 273 (360)
T ss_pred HHHcCCCe
Confidence 88766553
No 87
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.18 E-value=5.1e-11 Score=140.85 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=97.4
Q ss_pred cccCCCCEEEEEeccCCCCeeeeeEeeecCC--CCeEEEEEEEc----------CCccHHHHHHhhhccCCCCCCCcccc
Q 003589 626 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 693 (808)
Q Consensus 626 ~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~G~s~~l 693 (808)
.++.||||+.+..|. ..|||||+|+|. ++.++|+|+.. |..|..|.+.+ +
T Consensus 367 ~~~~~gq~v~ll~~~----~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l-------~------- 428 (597)
T TIGR01931 367 ADLDAEQLISLLRPL----TPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERL-------K------- 428 (597)
T ss_pred CCCCHHHHHHhCccc----CCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhC-------C-------
Confidence 578999999998753 679999999994 57899999864 66677776533 2
Q ss_pred cccCCCCCEEEEeccc-CCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccc-------------cchHHHHHHHHh
Q 003589 694 RAEGHNNPEVLIDGPY-GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-------------IEEEEENDLENG 759 (808)
Q Consensus 694 ~~~~~~~~~v~i~GPy-G~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~-------------~~~~~~~eL~~l 759 (808)
.|++|.|.||. |.|..+.....++|||||||||||++|++++....... .+..+.+||..+
T Consensus 429 -----~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El~~~ 503 (597)
T TIGR01931 429 -----EGDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQNY 503 (597)
T ss_pred -----CCCEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHHHHH
Confidence 35889999865 46765444456899999999999999999988764321 112477899888
Q ss_pred hhcCCCEEE-EEEcCCCCCCccccccccccCHHHHH
Q 003589 760 RDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 760 ~~~~~~~~i-~vt~~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
.+.+....+ ...+.+. +.+|+|++.+.+
T Consensus 504 ~~~~~l~~l~~afSRd~-------~~k~yVqd~l~e 532 (597)
T TIGR01931 504 LKKGVLTKMDLAFSRDQ-------AEKIYVQHRIRE 532 (597)
T ss_pred HHcCCCceeEEEEecCC-------CCCccHHHHHHH
Confidence 776654322 2223321 346777776543
No 88
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.1e-10 Score=110.31 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=118.5
Q ss_pred CCCCccccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccc----cCCCCCHHHHHHHHHHH
Q 003589 138 QPPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI----GMNKDSKDFAVELFDAL 213 (808)
Q Consensus 138 ~~~~~~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lF~~l 213 (808)
.+|+.||-+++|.+.+-++...+...+.+..-+++.++...+|.++.|+|++++|...+ +..+ +.+++...|+ +
T Consensus 37 e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-t~eEi~~afr-l 114 (172)
T KOG0028|consen 37 EAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD-TKEEIKKAFR-L 114 (172)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-cHHHHHHHHH-c
Confidence 45688999999999999988888999998889999999999999999999999999875 5566 8899999999 5
Q ss_pred HcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 214 TRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 214 ~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.|-|+ +|.|++.+|..++..++....|++++.+.+.+|.|+||-|+.+||..+|+
T Consensus 115 ~D~D~--~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 115 FDDDK--TGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred ccccC--CCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 77676 99999999999999999999999999999999999999999999999886
No 89
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.18 E-value=2.3e-10 Score=137.84 Aligned_cols=120 Identities=18% Similarity=0.326 Sum_probs=95.7
Q ss_pred eeEEEEEEEEecCCEEEEEEEcCCC-cccCCCCEEEEEeccCC--CC-eeeeeEeeecC-CCCeEEEEEEEcCCccHHHH
Q 003589 601 KAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PF-EWHPFSITSAP-DDDYLSVHIRTLGDWTRQLR 675 (808)
Q Consensus 601 ~~~~i~~v~~l~~~v~~l~l~~p~~-~~~~pGQyv~l~~p~~~--~~-~~hPFSIas~p-~~~~l~l~Ir~~g~~T~~L~ 675 (808)
...+|++++.++++++.+++..|.. -.++||||+.|+.++.+ .. +.+||||++.+ +.+.++|.++..|..|+.|.
T Consensus 791 l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 791 LTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred hceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHh
Confidence 3568999999999999999998863 36899999999986432 22 55799999976 56789999999999999886
Q ss_pred HHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHh
Q 003589 676 TVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 744 (808)
Q Consensus 676 ~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 744 (808)
.+ ++ |+.+.|.||+|+++. ...++++|+||||+|++| +++.+.+.
T Consensus 871 ~l--------~~------------Gd~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~~ 915 (1028)
T PRK06567 871 TL--------SE------------NEKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKEN 915 (1028)
T ss_pred cC--------CC------------CCEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHHC
Confidence 64 23 578999999999875 334678999999999997 44665543
No 90
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.15 E-value=2.7e-10 Score=105.26 Aligned_cols=137 Identities=16% Similarity=0.374 Sum_probs=104.3
Q ss_pred cCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCC---
Q 003589 167 AGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS--- 240 (808)
Q Consensus 167 ~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~--- 240 (808)
+..++++++|..+|..+||+|+..+..+|| |.+| ++.++.+.-.. .+++..+-..|+|++|+-++.++.++.
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~-~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQ-PKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcC-cccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 455889999999999999999999999886 8888 77666665543 222311247899999999999997653
Q ss_pred hHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 003589 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (808)
Q Consensus 241 ~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~ 314 (808)
.-+..-.-.+.|||+++|.|...|+++++.... ++++ ++++++ ++.- -.|++|.|+||+|++.+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG--ekl~--eeEVe~----Llag-~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG--EKLT--EEEVEE----LLAG-QEDSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH--hhcc--HHHHHH----HHcc-ccccCCcCcHHHHHHHHh
Confidence 346666778999999999999999999998543 3444 333444 4333 447899999999998765
No 91
>PTZ00183 centrin; Provisional
Probab=99.15 E-value=2.9e-10 Score=111.09 Aligned_cols=126 Identities=15% Similarity=0.232 Sum_probs=108.7
Q ss_pred CccccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhcccccc----CCCCCHHHHHHHHHHHHcc
Q 003589 141 ARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIG----MNKDSKDFAVELFDALTRR 216 (808)
Q Consensus 141 ~~~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg----~~~~~~~~~~~lF~~l~d~ 216 (808)
..+|++++|.++..+...++...+.....+.+..+|..+|.+++|.|+++||..++. ... .+..++.+|+. .|.
T Consensus 24 ~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~-~~~~l~~~F~~-~D~ 101 (158)
T PTZ00183 24 DLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD-PREEILKAFRL-FDD 101 (158)
T ss_pred HHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC-cHHHHHHHHHH-hCC
Confidence 679999999999888887777665455667899999999999999999999988763 223 55678889994 677
Q ss_pred cCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 217 RNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 217 d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
++ +|.|+.+||..++..++....+++++.+|..+|.|++|.|+.+||.+++.
T Consensus 102 ~~--~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 102 DK--TGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred CC--CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 77 99999999999999888778889999999999999999999999999885
No 92
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.14 E-value=2.7e-10 Score=113.51 Aligned_cols=132 Identities=17% Similarity=0.309 Sum_probs=101.9
Q ss_pred HHHHHHHHHhHcCCCCceEehhhcccccc-CC--CCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHH
Q 003589 169 WANVEKRFDEITASTNGVLPRARFGECIG-MN--KDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRL 245 (808)
Q Consensus 169 ~~~l~~~F~~lD~d~dG~Is~~ef~~~lg-~~--~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L 245 (808)
..++...|...|.|+.|.|+-+|+..++. .+ .=+.+.++.|.. ++|.++ +|+|+++||.+.|..+. ..
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~-mfd~~~--~G~i~f~EF~~Lw~~i~------~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMIS-MFDRDN--SGTIGFKEFKALWKYIN------QW 126 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHH-HhcCCC--CCccCHHHHHHHHHHHH------HH
Confidence 35688889999999999999999998874 11 104566777777 677776 89999999999998884 58
Q ss_pred HHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCC
Q 003589 246 QTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (808)
Q Consensus 246 ~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p 317 (808)
+.+|+-||+|++|.|+..||+++++...- .++ .+..+.+++++|.-..|.|.|++|.+.+..-+
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~Gy--~Ls------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLGY--RLS------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcCc--CCC------HHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 89999999999999999999999975432 222 23455588888877789999999988876543
No 93
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.11 E-value=2.5e-10 Score=95.08 Aligned_cols=66 Identities=29% Similarity=0.465 Sum_probs=56.9
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 313 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll 313 (808)
+++.+|+.+|+|+||+|+.+||+.++........ ++..++.++.+|+.+|.|+||.|+++||..+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~----~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS----DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST----HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc----HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5889999999999999999999999985432221 55677888999999999999999999999876
No 94
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.11 E-value=4.9e-10 Score=126.08 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=84.4
Q ss_pred CCeeeeeEeeecCC--CCeEEEEEEEc-----------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEeccc
Q 003589 643 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPY 709 (808)
Q Consensus 643 ~~~~hPFSIas~p~--~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPy 709 (808)
+.+.|||||+|+|. .+.++|+|+.. |-.|..|.++ . .|++|.|.||+
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l--------~------------~Gd~v~v~~p~ 220 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGL--------K------------VGQRVTVFIKK 220 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhc--------C------------CCCEEEEEEEC
Confidence 34789999999995 47899999976 3334444321 2 35899999999
Q ss_pred CCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHh----c-----------cc--cchHHHHHHHHhhhcCCCEEE-EEE
Q 003589 710 GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN----M-----------KA--IEEEEENDLENGRDTGVNTTI-III 771 (808)
Q Consensus 710 G~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~----~-----------~~--~~~~~~~eL~~l~~~~~~~~i-~vt 771 (808)
|.|..+.....++|||||||||||++|++++.... . +. .+..+.+|+.++.+.+....+ ...
T Consensus 221 g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~ 300 (382)
T cd06207 221 SSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAF 300 (382)
T ss_pred CcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEe
Confidence 99876444457899999999999999999987532 1 11 112378999998877665333 333
Q ss_pred cCCCCCCccccccccccCHHH
Q 003589 772 DNNYEPFFFWTQKKGPIQDKK 792 (808)
Q Consensus 772 ~~~~~~~~~w~g~~G~v~~~~ 792 (808)
+.+.. .+|+|++.+
T Consensus 301 Srd~~-------~~~yVq~~l 314 (382)
T cd06207 301 SRDQP-------KKVYVQDLI 314 (382)
T ss_pred cCCCC-------CceEhHHHH
Confidence 33222 256666654
No 95
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.11 E-value=5.5e-10 Score=126.23 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=91.7
Q ss_pred CCeeeeeEeeecCCC--CeEEEEEEEc-----CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEec-ccCCCCC
Q 003589 643 PFEWHPFSITSAPDD--DYLSVHIRTL-----GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDG-PYGAPAQ 714 (808)
Q Consensus 643 ~~~~hPFSIas~p~~--~~l~l~Ir~~-----g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~G-PyG~~~~ 714 (808)
+.+.|+|||+|+|.. +.++|+|+.. |-.|..|.++.... + ..|+.|.+.| |.|.|..
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~------~---------~~G~~v~i~~~~~g~F~l 235 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA------S---------SHGVKVPFYLRSSSRFRL 235 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh------c---------CCCCEEEEEEecCCCcCC
Confidence 347899999999953 7899998875 44677776653210 0 0257899998 6777775
Q ss_pred CCC-CCCeEEEEEecccHHHHHHHHHHHHHhc------c-----------cc--chHHHHHHHHhhhcCCCE-EEEEEcC
Q 003589 715 DYK-EYEVVLLVGLGIGATPMISIVKDIVNNM------K-----------AI--EEEEENDLENGRDTGVNT-TIIIIDN 773 (808)
Q Consensus 715 ~~~-~~~~vllIagGiGITP~lsil~~l~~~~------~-----------~~--~~~~~~eL~~l~~~~~~~-~i~vt~~ 773 (808)
+.. ...++|||||||||||++|++++..... . .. +..|.+||.++.+.+... ...+.+.
T Consensus 236 p~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SR 315 (398)
T cd06203 236 PPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSR 315 (398)
T ss_pred CCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECC
Confidence 443 4578999999999999999999876521 1 11 123779999988776653 3333444
Q ss_pred CCCCCccccccccccCHHHHH
Q 003589 774 NYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 774 ~~~~~~~w~g~~G~v~~~~~~ 794 (808)
+.+. | |.+|+|++.+.+
T Consensus 316 d~~~---~-g~k~yVqd~l~~ 332 (398)
T cd06203 316 DEND---G-STPKYVQDKLEE 332 (398)
T ss_pred CCCC---C-CCceecchHHHh
Confidence 4443 3 678999887654
No 96
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.07 E-value=5.7e-10 Score=119.86 Aligned_cols=132 Identities=20% Similarity=0.329 Sum_probs=109.1
Q ss_pred HHHHHHHHhHcCCCCceEehhhccccc---cC-CCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHH
Q 003589 170 ANVEKRFDEITASTNGVLPRARFGECI---GM-NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRL 245 (808)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~-~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L 245 (808)
.+++.+|+.+|.+++|.++..++.+++ +. ++ ..+.+..+|.+ .|.+. +|.+||+||..++. ..|.++
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~-~~~~~~~l~~~-~d~~~--dg~vDy~eF~~Y~~-----~~E~~l 84 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKP-NYEAAKMLFSA-MDANR--DGRVDYSEFKRYLD-----NKELEL 84 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCC-chHHHHHHHHh-cccCc--CCcccHHHHHHHHH-----HhHHHH
Confidence 568999999999999999999999765 32 24 55678888885 45555 99999999999884 347789
Q ss_pred HHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCc
Q 003589 246 QTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (808)
Q Consensus 246 ~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~ 318 (808)
..+|+..|.|.||.|+.+|+.+.++... .+++ ++.++.+|+.+|+|+++.|+++||...+.-+|+
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~g--i~l~------de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLG--IQLS------DEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhC--CccC------HHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 9999999999999999999999997443 2233 344556999999999999999999999999884
No 97
>PTZ00184 calmodulin; Provisional
Probab=99.03 E-value=1.3e-09 Score=105.06 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=107.3
Q ss_pred CCccccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccccC----CCCCHHHHHHHHHHHHc
Q 003589 140 PARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGM----NKDSKDFAVELFDALTR 215 (808)
Q Consensus 140 ~~~~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~----~~~~~~~~~~lF~~l~d 215 (808)
|..+|++++|.+..-+...++........-+.+..+|+.+|.+++|.|++++|..++.. .. ..+.+..+|+ ..|
T Consensus 17 F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~-~~~~~~~~F~-~~D 94 (149)
T PTZ00184 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD-SEEEIKEAFK-VFD 94 (149)
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc-HHHHHHHHHH-hhC
Confidence 36799999999998888887766554445678999999999999999999999988742 12 3456788898 477
Q ss_pred ccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 216 RRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 216 ~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.++ +|.|+.+||..++..++....++.++.+|+.+|.|++|.|+.+||..++.
T Consensus 95 ~~~--~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 95 RDG--NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCC--CCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 777 99999999999999887777888999999999999999999999988774
No 98
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.01 E-value=1.1e-09 Score=123.32 Aligned_cols=134 Identities=10% Similarity=0.104 Sum_probs=86.5
Q ss_pred cCCCCEEEEEeccCCCCeeeeeEeeecCC--CCeEEEEEEE------------cCCccHHHHHHhhhccCCCCCCCcccc
Q 003589 628 YKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRT------------LGDWTRQLRTVFSEVCRPPPNGISGLL 693 (808)
Q Consensus 628 ~~pGQyv~l~~p~~~~~~~hPFSIas~p~--~~~l~l~Ir~------------~g~~T~~L~~~~~~~~~~~~~G~s~~l 693 (808)
...||++.+. |.. +.|+|||+|+|. .+.+++.|+. .|..|..|.++ .+
T Consensus 147 ~~~~~~l~~~-p~l---~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l--------~~------ 208 (384)
T cd06206 147 LPLATFLAML-PPM---RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSL--------RP------ 208 (384)
T ss_pred CCHHHHHHhC-ccc---CCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhC--------CC------
Confidence 3568888875 433 679999999984 4566666665 34445555321 22
Q ss_pred cccCCCCCEEE--EecccCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHh---cc------------cc--chHHHH
Q 003589 694 RAEGHNNPEVL--IDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN---MK------------AI--EEEEEN 754 (808)
Q Consensus 694 ~~~~~~~~~v~--i~GPyG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~---~~------------~~--~~~~~~ 754 (808)
|+.|. +.||+|.+..+....+++|||||||||||++|++++.... .. .. +..|.+
T Consensus 209 ------Gd~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~ 282 (384)
T cd06206 209 ------GDSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRD 282 (384)
T ss_pred ------CCeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHH
Confidence 46666 5699999876544567899999999999999999987642 11 11 223788
Q ss_pred HHHHhhhcCCCEE-EEEEcCCCCCCccccccccccCHHH
Q 003589 755 DLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKK 792 (808)
Q Consensus 755 eL~~l~~~~~~~~-i~vt~~~~~~~~~w~g~~G~v~~~~ 792 (808)
||.++++. .+.. .++.+++++ +.+|+|++.+
T Consensus 283 el~~~~~~-~~~~l~~a~Sr~~~------~~~~yVq~~i 314 (384)
T cd06206 283 ELEEWEAA-GVVSVRRAYSRPPG------GGCRYVQDRL 314 (384)
T ss_pred HHHHHHHC-CCeEEEEEecccCC------CCCEechhhH
Confidence 89888763 3322 333343322 1356777654
No 99
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.01 E-value=1.1e-09 Score=109.19 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=127.5
Q ss_pred CCccccCchhhHHHHhhhhhhhc-cCCCcCHHHHHHHHHhHcCCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccC
Q 003589 140 PARFDRNKSAAAYALKGLKFISK-TDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRN 218 (808)
Q Consensus 140 ~~~~dr~~~~a~~al~~l~~i~~-~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~ 218 (808)
|+..|+++++.+.+.++...+.. +-..-..+-++-+...+|.|++|+|.++||+.+...- ...+.+|+. +|+|+
T Consensus 63 f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i----~~Wr~vF~~-~D~D~ 137 (221)
T KOG0037|consen 63 FQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI----NQWRNVFRT-YDRDR 137 (221)
T ss_pred HHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH----HHHHHHHHh-cccCC
Confidence 47899999999999998777663 3344566788999999999999999999999877533 237899995 78887
Q ss_pred CCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCC
Q 003589 219 IQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDP 298 (808)
Q Consensus 219 ~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~ 298 (808)
+|+|+..||..++..++-..+++-.+.+++.||.-++|.|.+++|.+.+... . . .-+.|++.|.
T Consensus 138 --SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L------~-------~-lt~~Fr~~D~ 201 (221)
T KOG0037|consen 138 --SGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL------Q-------R-LTEAFRRRDT 201 (221)
T ss_pred --CCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH------H-------H-HHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999988521 1 1 1128999999
Q ss_pred CCCCc--eeHHHHHHHH
Q 003589 299 DHLGC--IMIDNLEMLL 313 (808)
Q Consensus 299 d~dG~--Is~eEF~~ll 313 (808)
+.+|. |+|++|..+.
T Consensus 202 ~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 202 AQQGSITISYDDFLQMT 218 (221)
T ss_pred ccceeEEEeHHHHHHHh
Confidence 99997 5689998765
No 100
>PRK06214 sulfite reductase; Provisional
Probab=98.95 E-value=5.5e-09 Score=120.82 Aligned_cols=104 Identities=20% Similarity=0.292 Sum_probs=72.3
Q ss_pred CCeeeeeEeeecCC--CCeEEEEEEEc----------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEE--ecc
Q 003589 643 PFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLI--DGP 708 (808)
Q Consensus 643 ~~~~hPFSIas~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i--~GP 708 (808)
+.+.|||||+|+|. .+.++|+|+.. |-.|..|.+.+ + .|+.|.| .+|
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l-------~------------~Gd~V~v~i~~~ 373 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERL-------A------------PGTRVRVYVQKA 373 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcC-------C------------CCCEEEEEecCC
Confidence 34789999999995 57899999865 44455554322 2 2466665 567
Q ss_pred cCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhcc-----------c--cchHHHHHHHHhhhcCCCE
Q 003589 709 YGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-----------A--IEEEEENDLENGRDTGVNT 766 (808)
Q Consensus 709 yG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~-----------~--~~~~~~~eL~~l~~~~~~~ 766 (808)
+| |..+.....++||||+||||||++|++++...... + .+..|.+||.++.+.+...
T Consensus 374 ~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~ 443 (530)
T PRK06214 374 HG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLT 443 (530)
T ss_pred CC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCce
Confidence 77 66543445689999999999999999998654321 1 1124778999888776653
No 101
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=98.95 E-value=2.2e-09 Score=126.61 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=82.6
Q ss_pred cccCCCCEEEEEeccCCCCeeeeeEeeecCC--CCeEEEEEEEc----------CCccHHHHHHhhhccCCCCCCCcccc
Q 003589 626 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 693 (808)
Q Consensus 626 ~~~~pGQyv~l~~p~~~~~~~hPFSIas~p~--~~~l~l~Ir~~----------g~~T~~L~~~~~~~~~~~~~G~s~~l 693 (808)
.++.||||+.+..|. +.|+|||+|+|. .+.+.+.|+.. |..|..|.+.
T Consensus 370 ~~~~~~q~l~ll~~l----~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~---------------- 429 (600)
T PRK10953 370 AQLDAEQLIGLLRPL----TPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADR---------------- 429 (600)
T ss_pred CCCCHHHHHHhCCCC----CCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhc----------------
Confidence 367899999987653 579999999994 46777776543 2223333221
Q ss_pred cccCCCCCEEEEecccC-CCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhccc-------------cchHHHHHHHHh
Q 003589 694 RAEGHNNPEVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-------------IEEEEENDLENG 759 (808)
Q Consensus 694 ~~~~~~~~~v~i~GPyG-~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~~~-------------~~~~~~~eL~~l 759 (808)
.+.|++|.|.||.| .|..+.....++||||+|+||||++|++++....... .+..|.+||..+
T Consensus 430 ---l~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~ 506 (600)
T PRK10953 430 ---LEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRY 506 (600)
T ss_pred ---CCCCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHH
Confidence 22468999999886 5665444557899999999999999999988765321 122478999998
Q ss_pred hhcCCC
Q 003589 760 RDTGVN 765 (808)
Q Consensus 760 ~~~~~~ 765 (808)
.+.+.-
T Consensus 507 ~~~g~l 512 (600)
T PRK10953 507 VKEGLL 512 (600)
T ss_pred HHcCCc
Confidence 876653
No 102
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.92 E-value=2.9e-09 Score=108.57 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=100.0
Q ss_pred ccceeEEEEEEEEecCCEEEEEEEcCCC----cccCCCCEEEEEeccCC--C--CeeeeeEeeecCCCCeEEEEEEEcCC
Q 003589 598 SSIKAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVS--P--FEWHPFSITSAPDDDYLSVHIRTLGD 669 (808)
Q Consensus 598 ~~~~~~~i~~v~~l~~~v~~l~l~~p~~----~~~~pGQyv~l~~p~~~--~--~~~hPFSIas~p~~~~l~l~Ir~~g~ 669 (808)
.++.+++|+.....++|+..+.+.+..+ ....|||||.+....++ . ..-+.||..++...+.++|.||+..+
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~ 226 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAG 226 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhc
Confidence 4567889999999999999999975332 35789999999774433 1 12234555555557889999999865
Q ss_pred ccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCC---CCCCCeEEEEEecccHHHHHHHHHHHHHhcc
Q 003589 670 WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQD---YKEYEVVLLVGLGIGATPMISIVKDIVNNMK 746 (808)
Q Consensus 670 ~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~---~~~~~~vllIagGiGITP~lsil~~l~~~~~ 746 (808)
+++++ ++|++.++|+.|.+..|-|.|... .....+++|.|||+||||+++|++..+....
T Consensus 227 ------G~VS~-----------~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~ 289 (385)
T KOG3378|consen 227 ------GVVSN-----------FVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYS 289 (385)
T ss_pred ------hhhHH-----------HhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhcCC
Confidence 44433 455566678999999999998742 2344789999999999999999998776654
Q ss_pred ccc
Q 003589 747 AIE 749 (808)
Q Consensus 747 ~~~ 749 (808)
.+.
T Consensus 290 ~RP 292 (385)
T KOG3378|consen 290 SRP 292 (385)
T ss_pred CCc
Confidence 444
No 103
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=4.8e-09 Score=110.30 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=114.6
Q ss_pred CccccCchhhHHHHhhhhhhhc--------cCC------CcCHHHHHHHHHhHcCCCCceEehhhccccccCCCCCHHHH
Q 003589 141 ARFDRNKSAAAYALKGLKFISK--------TDG------GAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFA 206 (808)
Q Consensus 141 ~~~dr~~~~a~~al~~l~~i~~--------~~~------~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~ 206 (808)
...|++++|.+..-+-+...-. .+. ...+.+=+++|+.-|.|+||.++++||...+...+ .....
T Consensus 120 ~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe-~p~M~ 198 (325)
T KOG4223|consen 120 DEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEE-HPHMK 198 (325)
T ss_pred HHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhh-cchHH
Confidence 3578888888775555433321 111 12234567899999999999999999999985432 11110
Q ss_pred -HHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChH-----HHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccc
Q 003589 207 -VELFDALTRRRNIQGDTITKDQLREFWDQISDQSFD-----SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 280 (808)
Q Consensus 207 -~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~d-----e~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~ 280 (808)
--+-+.+.+.|.|++|+|+++||+.-+........+ .+-+++|...|+|+||+++.+|++.-|. .. +
T Consensus 199 ~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~--P~-~---- 271 (325)
T KOG4223|consen 199 DIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL--PS-E---- 271 (325)
T ss_pred HHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccC--CC-C----
Confidence 112333455666669999999999887665433221 2346899999999999999999986653 11 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCccc
Q 003589 281 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (808)
Q Consensus 281 ~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~ 320 (808)
...++..+..++-+.|.|+||++|++|- ..+++..
T Consensus 272 -~d~A~~EA~hL~~eaD~dkD~kLs~eEI----l~~~d~F 306 (325)
T KOG4223|consen 272 -QDHAKAEARHLLHEADEDKDGKLSKEEI----LEHYDVF 306 (325)
T ss_pred -ccHHHHHHHHHhhhhccCccccccHHHH----hhCccee
Confidence 2345677888999999999999999983 4565554
No 104
>PLN02964 phosphatidylserine decarboxylase
Probab=98.85 E-value=6.6e-09 Score=121.38 Aligned_cols=100 Identities=13% Similarity=0.228 Sum_probs=85.5
Q ss_pred cCHHHHHHHHHhHcCCCCceEehhhcccccc-CCCCCHH---HHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChH
Q 003589 167 AGWANVEKRFDEITASTNGVLPRARFGECIG-MNKDSKD---FAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFD 242 (808)
Q Consensus 167 ~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg-~~~~~~~---~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~d 242 (808)
.+.+++++.|+.+|.|+||.+ ...+...+| ..+ +++ +++++|+. .|.|+ +|.|+++||..++..++....+
T Consensus 140 kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~p-te~e~~fi~~mf~~-~D~Dg--dG~IdfdEFl~lL~~lg~~~se 214 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDP-VETERSFARRILAI-VDYDE--DGQLSFSEFSDLIKAFGNLVAA 214 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCC-CHHHHHHHHHHHHH-hCCCC--CCeEcHHHHHHHHHHhccCCCH
Confidence 466889999999999999997 555555667 355 444 47899995 67777 9999999999999998877888
Q ss_pred HHHHHhchhhcCCCCCceeHHHHHHHHHh
Q 003589 243 SRLQTFFDMVDKDADGRITEDEVREIISL 271 (808)
Q Consensus 243 e~L~~~F~~fDkD~dG~It~eEf~~~l~~ 271 (808)
++++.+|+.||+|+||+|+.+||+++++.
T Consensus 215 EEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 215 NKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999999999999999999974
No 105
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=98.84 E-value=2.1e-08 Score=113.98 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=77.8
Q ss_pred CCeeeeeEeeecCC--CCeEEEEEEEc-----------CCccHHHHHHhhhccC-CCCCCCcccccccCCCCCEEEEecc
Q 003589 643 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCR-PPPNGISGLLRAEGHNNPEVLIDGP 708 (808)
Q Consensus 643 ~~~~hPFSIas~p~--~~~l~l~Ir~~-----------g~~T~~L~~~~~~~~~-~~~~G~s~~l~~~~~~~~~v~i~GP 708 (808)
+.+.|+|||+|+|. .+.+++.|+.. |-.|..|.+....... ............+...|+.|.+..|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 34789999999994 46788888754 4445566554321000 0000000000000114688999999
Q ss_pred cCCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhc---c------------cc--chHHHHHHHHhhhcCCCEE
Q 003589 709 YGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM---K------------AI--EEEEENDLENGRDTGVNTT 767 (808)
Q Consensus 709 yG~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~---~------------~~--~~~~~~eL~~l~~~~~~~~ 767 (808)
.|.|..+.....++||||||+||||++|++++..... . .. +..|.+|+.++.+.+.+..
T Consensus 255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~~ 330 (416)
T cd06204 255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLE 330 (416)
T ss_pred cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCceE
Confidence 9988764444579999999999999999999864321 1 11 1237889999887665543
No 106
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=2.2e-08 Score=105.43 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=104.4
Q ss_pred hhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccccCCCC---CHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHh
Q 003589 160 ISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMNKD---SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (808)
Q Consensus 160 i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~---~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (808)
..+....+.-+.+.++|.++|.++||.|+.+|+...+..... ..+.++++.. .|.+. +|.|+++|+...+...
T Consensus 67 fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~--~d~~~--Dg~i~~eey~~~~~~~ 142 (325)
T KOG4223|consen 67 FDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDE--YDKNK--DGFITWEEYLPQTYGR 142 (325)
T ss_pred hhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCc--cceeeHHHhhhhhhhc
Confidence 334444556688999999999999999999999988743310 1122333333 45544 9999999999987753
Q ss_pred c-------cCC---hHH----HHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCC
Q 003589 237 S-------DQS---FDS----RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302 (808)
Q Consensus 237 ~-------~~~---~de----~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG 302 (808)
. +.. ... +-+.-|+.-|.|+||.+|.+||..++. .... ....+=.++..|+++|+|+||
T Consensus 143 ~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH------PEe~-p~M~~iVi~Etl~d~Dkn~DG 215 (325)
T KOG4223|consen 143 VDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH------PEEH-PHMKDIVIAETLEDIDKNGDG 215 (325)
T ss_pred ccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC------hhhc-chHHHHHHHHHHhhcccCCCC
Confidence 2 111 111 235679999999999999999998884 1110 122233567789999999999
Q ss_pred ceeHHHHHHHHHhCCc
Q 003589 303 CIMIDNLEMLLLQAPA 318 (808)
Q Consensus 303 ~Is~eEF~~ll~~~p~ 318 (808)
+|+++||..=|-.++.
T Consensus 216 ~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 216 KISLEEFIGDLYSHEG 231 (325)
T ss_pred ceeHHHHHhHHhhccC
Confidence 9999999988877653
No 107
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=98.77 E-value=4.4e-08 Score=111.08 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=80.1
Q ss_pred CeeeeeEeeecCC--CCeEEEEEEEc-------------CCccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecc
Q 003589 644 FEWHPFSITSAPD--DDYLSVHIRTL-------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGP 708 (808)
Q Consensus 644 ~~~hPFSIas~p~--~~~l~l~Ir~~-------------g~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GP 708 (808)
...|+|||+|+|. .+.+++.|+.. |-.|..|.+ .+ .|+.|.|.+|
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~--------l~------------~Gd~v~v~~~ 234 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNG--------LT------------PGDTVPCFVR 234 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHh--------CC------------CCCEEEEEEe
Confidence 3689999999995 46777777653 334444422 12 3578888775
Q ss_pred c-CCCCCCCCCCCeEEEEEecccHHHHHHHHHHHHHhc-------------------cc--cchHHHHHHHHhhhcCCCE
Q 003589 709 Y-GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM-------------------KA--IEEEEENDLENGRDTGVNT 766 (808)
Q Consensus 709 y-G~~~~~~~~~~~vllIagGiGITP~lsil~~l~~~~-------------------~~--~~~~~~~eL~~l~~~~~~~ 766 (808)
. |.|..+.....++||||+||||||++|++++..... +. .+..|.+||.++.+.+...
T Consensus 235 ~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~ 314 (406)
T cd06202 235 SAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLT 314 (406)
T ss_pred eCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCc
Confidence 4 355544344578999999999999999999754211 11 1123789999888776653
Q ss_pred -EEEEEcCCCCCCccccccccccCHHHHH
Q 003589 767 -TIIIIDNNYEPFFFWTQKKGPIQDKKSI 794 (808)
Q Consensus 767 -~i~vt~~~~~~~~~w~g~~G~v~~~~~~ 794 (808)
...+.+.+.. +.+|+|++.+.+
T Consensus 315 ~~~~a~SR~~~------~~k~yVq~~l~~ 337 (406)
T cd06202 315 EVYTALSREPG------KPKTYVQDLLKE 337 (406)
T ss_pred eEEEEEcCCCC------CCCeehhhHHHH
Confidence 3333343222 246888876553
No 108
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.72 E-value=2.5e-08 Score=88.09 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=54.1
Q ss_pred HHHHHhchhhcC-CCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 243 SRLQTFFDMVDK-DADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 243 e~L~~~F~~fDk-D~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
..+..+|+.||+ |++|+|+.+||+.+|+.... +.++. . +.++.+|+.+|.|+||.|+|+||..+|..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~---~--~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKD---V--EGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccC---H--HHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 358899999999 99999999999999985222 22221 0 44666999999999999999999999874
No 109
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.63 E-value=6.8e-08 Score=104.18 Aligned_cols=162 Identities=15% Similarity=0.197 Sum_probs=120.2
Q ss_pred CCccccCchhhHHHHhhhhhhhccCC-CcCHHHHHHHHHhHcCCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccC
Q 003589 140 PARFDRNKSAAAYALKGLKFISKTDG-GAGWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRN 218 (808)
Q Consensus 140 ~~~~dr~~~~a~~al~~l~~i~~~~~-~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~ 218 (808)
|+.||.+++|..+.-+..+-+.+... ....+..+..|..+|.|.||.++++||...+..++ ..+.++|+.+ |.
T Consensus 20 f~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E---~~l~~~F~~i-D~-- 93 (463)
T KOG0036|consen 20 FKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKE---LELYRIFQSI-DL-- 93 (463)
T ss_pred HHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhH---HHHHHHHhhh-cc--
Confidence 46789988888664443333333322 35557789999999999999999999999987654 4456778864 34
Q ss_pred CCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHH--HHhc
Q 003589 219 IQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALI--MEEL 296 (808)
Q Consensus 219 ~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i--~~e~ 296 (808)
++||.|+.+|....+..++.+..+++++.+|+..|+||++.|+.+|+++.+.+.. ++.+++..... +.-+
T Consensus 94 ~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p--------~s~i~di~~~W~h~~~i 165 (463)
T KOG0036|consen 94 EHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP--------ESDLEDIYDFWRHVLLI 165 (463)
T ss_pred ccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC--------hhHHHHHHHhhhhheEE
Confidence 4499999999999999999999999999999999999999999999999986432 22233322111 1236
Q ss_pred CCCCCCceeHHHHHHHHHhC
Q 003589 297 DPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 297 D~d~dG~Is~eEF~~ll~~~ 316 (808)
|...+..|. |+|....++.
T Consensus 166 digE~~~iP-dg~s~~e~~~ 184 (463)
T KOG0036|consen 166 DIGEDAVLP-DGDSKLENDS 184 (463)
T ss_pred EccccccCC-cchHHHHhcc
Confidence 778888887 7776655543
No 110
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.62 E-value=9e-08 Score=85.54 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=52.7
Q ss_pred HHHHHhchhhc-CCCCC-ceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 243 SRLQTFFDMVD-KDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 243 e~L~~~F~~fD-kD~dG-~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
..+..+|+.|| +|+|| +|+.+||++++....... +. ....++.++.+|+++|.|+||.|+|+||..+|..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~-~~--~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDF-LS--SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHh-cc--cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 35778899999 89999 599999999997422111 11 0012345666999999999999999999999874
No 111
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.58 E-value=1.1e-07 Score=84.09 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=52.5
Q ss_pred HHHHHhchhhc-CCCCC-ceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 243 SRLQTFFDMVD-KDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 243 e~L~~~F~~fD-kD~dG-~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
..++.+|+.|| +|+|| +|+.+||+.+|+.....- +. +...++.++.+|+++|.|+||.|+|+||..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~-lg--~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHF-LE--EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHH-hc--CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35889999998 89999 699999999998521100 00 0011234566999999999999999999998864
No 112
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.56 E-value=1.4e-07 Score=94.66 Aligned_cols=137 Identities=17% Similarity=0.253 Sum_probs=95.9
Q ss_pred Hhhh-HHHHHhhhccCCCCCCCccccC-chhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCce-Eehhhcccccc
Q 003589 121 RQVS-QELKRLASFAKKPQPPARFDRN-KSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGV-LPRARFGECIG 197 (808)
Q Consensus 121 ~~~s-~~lk~~~~~~~~~~~~~~~dr~-~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~-Is~~ef~~~lg 197 (808)
.+|| +|+.++- ..|.++++. .+|-++.-+.+... ....+. -..++|+.++.+++|. |++++|...+.
T Consensus 25 ~~fs~~EI~~L~------~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls 94 (187)
T KOG0034|consen 25 TQFSANEIERLY------ERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLS 94 (187)
T ss_pred cccCHHHHHHHH------HHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHh
Confidence 4455 5666555 345577787 66666666655544 222222 2566677777777777 99999999884
Q ss_pred C---CCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccC-Ch------HHHHHHhchhhcCCCCCceeHHHHHH
Q 003589 198 M---NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ-SF------DSRLQTFFDMVDKDADGRITEDEVRE 267 (808)
Q Consensus 198 ~---~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~-~~------de~L~~~F~~fDkD~dG~It~eEf~~ 267 (808)
. +...++-++=.|+ +.|.++ +|.|+.+|+..++..+... .. ++.+...|..+|.|+||+|+++|+.+
T Consensus 95 ~f~~~~~~~~Kl~faF~-vYD~~~--~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 95 VFSPKASKREKLRFAFR-VYDLDG--DGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCK 171 (187)
T ss_pred hhcCCccHHHHHHHHHH-HhcCCC--CCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 3 2202224555688 688877 9999999999999988543 22 24467889999999999999999999
Q ss_pred HHH
Q 003589 268 IIS 270 (808)
Q Consensus 268 ~l~ 270 (808)
++.
T Consensus 172 ~v~ 174 (187)
T KOG0034|consen 172 VVE 174 (187)
T ss_pred HHH
Confidence 996
No 113
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.52 E-value=5.2e-07 Score=90.60 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhcc-CChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccc
Q 003589 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISD-QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 280 (808)
Q Consensus 202 ~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~-~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~ 280 (808)
++..+++++..+..... +|.++.++|..++..+.. ++.+.-.+.+|+.||+|+||.|+++||-..+......
T Consensus 24 ~~~ei~~~Yr~Fk~~cP--~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG----- 96 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECP--SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG----- 96 (193)
T ss_pred CHHHHHHHHHHhcccCC--CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-----
Confidence 56778888887655444 799999999999999875 6677788999999999999999999987777643322
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 281 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 281 ~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
.+++.++-.|+-.|.|+||+|+++|+..+++..
T Consensus 97 ---t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 97 ---TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred ---cHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 234445557999999999999999999998864
No 114
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.47 E-value=3.9e-07 Score=81.28 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=53.5
Q ss_pred HHHHHHhchhhc-CCCCC-ceeHHHHHHHHHh-hhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 242 DSRLQTFFDMVD-KDADG-RITEDEVREIISL-SASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 242 de~L~~~F~~fD-kD~dG-~It~eEf~~~l~~-~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
.+.++.+|+.|| +|++| .|+.+||+.+++. ........ ..++.++.+|+++|.|++|.|+|+||..++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~----~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQ----KDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCC----CCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 356899999997 99999 5999999999974 21111101 11334566999999999999999999998874
No 115
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.46 E-value=2.9e-07 Score=76.44 Aligned_cols=61 Identities=26% Similarity=0.428 Sum_probs=48.5
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHHHhccC----ChHHHHHHhchhhcCCCCCceeHHHHHHHH
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQ----SFDSRLQTFFDMVDKDADGRITEDEVREII 269 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~----~~de~L~~~F~~fDkD~dG~It~eEf~~~l 269 (808)
++++|+. .|.++ +|.|+.+||..++..+... ..++.++.+|+.+|+|+||.|+.+||.+++
T Consensus 2 l~~~F~~-~D~d~--~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKK-FDKDG--DGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHH-HSTTS--SSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHH-HcCCc--cCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4567884 66666 8888888888888887643 345667778999999999999999998875
No 116
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.42 E-value=4.5e-07 Score=81.22 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=53.5
Q ss_pred HHHHHhchhhcC-CC-CCceeHHHHHHHHHhhhcc-CCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 243 SRLQTFFDMVDK-DA-DGRITEDEVREIISLSASA-NKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 243 e~L~~~F~~fDk-D~-dG~It~eEf~~~l~~~~~~-~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
..++.+|+.||. |+ +|+|+.+||+.+++..... .... ..++.++.+++++|.|++|.|+|+||..+|...
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~----~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ----KDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc----ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 468899999997 97 7999999999999742111 1111 123456669999999999999999999998753
No 117
>PLN02964 phosphatidylserine decarboxylase
Probab=98.40 E-value=1e-06 Score=103.27 Aligned_cols=99 Identities=21% Similarity=0.331 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhcc-CChHHH---HHHhchhhcCCCCCceeHHHHHHHHHhhhccCCcc
Q 003589 204 DFAVELFDALTRRRNIQGDTITKDQLREFWDQISD-QSFDSR---LQTFFDMVDKDADGRITEDEVREIISLSASANKLS 279 (808)
Q Consensus 204 ~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~-~~~de~---L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~ 279 (808)
+...+.|+ +.|.|+ +|.| +..++..++. ...+++ ++.+|+.+|.|+||.|+++||..++..... ..
T Consensus 143 ~elkeaF~-lfD~dg--dG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~--~~- 212 (644)
T PLN02964 143 ESACESFD-LLDPSS--SNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN--LV- 212 (644)
T ss_pred HHHHHHHH-HHCCCC--CCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc--CC-
Confidence 44567788 577777 8987 6666666662 334443 899999999999999999999999974321 11
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCC
Q 003589 280 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (808)
Q Consensus 280 ~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p 317 (808)
.++.+..+|+.+|.|++|+|+++||..+|...+
T Consensus 213 -----seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 213 -----AANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred -----CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 133466699999999999999999999998764
No 118
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=98.39 E-value=5.3e-07 Score=82.44 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=55.0
Q ss_pred EEEecccHHHHHHHHHHHHHhccccc------------hHHHHHHHHhhhcCCC-EEEEEEcCCCCCCccccccccccCH
Q 003589 724 LVGLGIGATPMISIVKDIVNNMKAIE------------EEEENDLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQD 790 (808)
Q Consensus 724 lIagGiGITP~lsil~~l~~~~~~~~------------~~~~~eL~~l~~~~~~-~~i~vt~~~~~~~~~w~g~~G~v~~ 790 (808)
|||||+||||++|++++++.+....+ ..+.+||.++.+..++ ..++.+....+. |.+..|+|++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~ 77 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYVSSPDDG---WDGFKGRVTD 77 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEETTTTSS---TTSEESSHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccccccccc---cCCceeehhH
Confidence 79999999999999999997632222 1378999999888776 455445555666 8999999999
Q ss_pred HHHHHhhc
Q 003589 791 KKSILLLG 798 (808)
Q Consensus 791 ~~~~~~~~ 798 (808)
...+.+.+
T Consensus 78 ~~~~~~~~ 85 (109)
T PF00175_consen 78 LLLEDLLP 85 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
Confidence 98665544
No 119
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.39 E-value=5.5e-07 Score=83.50 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=53.8
Q ss_pred hHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCcc
Q 003589 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (808)
Q Consensus 241 ~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~ 319 (808)
..+++..+|..+|+|+||+|+.+|+..+.. . ..+..+..+|+.+|.|+||+||++||...+ ..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l-~-----------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~~~ 111 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRL-D-----------PNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKEDD 111 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHc-c-----------chHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hChhh
Confidence 356799999999999999999999998751 0 113455669999999999999999999999 44444
No 120
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.36 E-value=8.2e-07 Score=97.39 Aligned_cols=137 Identities=15% Similarity=0.229 Sum_probs=106.3
Q ss_pred HHHHHHHhHcCCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccC-CCCCcccHHHHHHHHHHhccCChHHHHHHhc
Q 003589 171 NVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRN-IQGDTITKDQLREFWDQISDQSFDSRLQTFF 249 (808)
Q Consensus 171 ~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~-~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F 249 (808)
-+.-.|-.+|+|.||.|+.++++..-.-.. +..+++++|+.+.+... ..+|.++|++|+.++..+-+.....-++-.|
T Consensus 279 viy~kFweLD~Dhd~lidk~~L~ry~d~tl-t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwF 357 (493)
T KOG2562|consen 279 VIYCKFWELDTDHDGLIDKEDLKRYGDHTL-TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWF 357 (493)
T ss_pred HHHHHHhhhccccccccCHHHHHHHhccch-hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhhe
Confidence 344568999999999999999988764444 57889999994322110 1268999999999999988888888899999
Q ss_pred hhhcCCCCCceeHHHHHHHHHhh----hccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHH
Q 003589 250 DMVDKDADGRITEDEVREIISLS----ASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 311 (808)
Q Consensus 250 ~~fDkD~dG~It~eEf~~~l~~~----~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ 311 (808)
+..|.|+||.|+.+|++-+.... ....... -..++...+|++.+-+.+.|+|++++|+.
T Consensus 358 rclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~---l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 358 RCLDLDGDGILTLNELRYFYEEQLQRMECMGQEA---LPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred eeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCc---ccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 99999999999999998776522 1111111 12366777788889999999999999987
No 121
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.33 E-value=1.3e-06 Score=77.14 Aligned_cols=70 Identities=16% Similarity=0.283 Sum_probs=53.9
Q ss_pred HHHHHhchhhcC--CCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 243 SRLQTFFDMVDK--DADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 243 e~L~~~F~~fDk--D~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
+.++.+|..||+ |++|.|+.+||+.+++...... .+ ....++.++.+|.++|.|++|.|+|+||..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~-~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNF-LK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhh-cc--CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 568899999999 8999999999999997422111 10 0012344666999999999999999999998875
No 122
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.32 E-value=1.2e-06 Score=78.67 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=53.7
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
.++++.+|+.||+|++|.|+.+|++++++.. ..+ + +.++.++..+|.+++|+|+|+||..+|...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~~--~----~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GLP--Q----TLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CCC--H----HHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3578999999999999999999999999742 122 2 335568999999999999999999988754
No 123
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.32 E-value=1.2e-06 Score=77.63 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=52.1
Q ss_pred HHHHHhchh-hcCCCCC-ceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 243 SRLQTFFDM-VDKDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 243 e~L~~~F~~-fDkD~dG-~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
+.+..+|+. +|+||+| .|+.+||+.++....... +. ....+..++.+|+++|.|+||.|+|+||..+|..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~-~~--~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASF-TK--NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHh-hc--CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 457888998 7899987 999999999997432110 00 0011244566999999999999999999998864
No 124
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.30 E-value=1.3e-06 Score=72.53 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=50.2
Q ss_pred HHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 246 QTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 246 ~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
+.+|+.+|+|++|.|+.+|++.++... ..+ ++.++.+++.+|.|++|.|+++||..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g~~------~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----GLP------RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----CCC------HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 568999999999999999999999732 111 2345668999999999999999999988753
No 125
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.29 E-value=9.5e-07 Score=78.05 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=50.9
Q ss_pred HHHHhchhhcC-CC-CCceeHHHHHHHHHhhh-ccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 244 RLQTFFDMVDK-DA-DGRITEDEVREIISLSA-SANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 244 ~L~~~F~~fDk-D~-dG~It~eEf~~~l~~~~-~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
.+-.+|+.||. || +|+|+.+||+++++... -..+.+ ++.++.+|+++|.|++|.|+|+||..+|..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t------~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQ------DAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 36678999998 78 89999999999996311 112222 234555899999999999999999988864
No 126
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.27 E-value=5.7e-06 Score=78.27 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=118.5
Q ss_pred chhhhHHhhh-HHHHHhhhccCCCCCCCccccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhcc
Q 003589 115 TASARIRQVS-QELKRLASFAKKPQPPARFDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFG 193 (808)
Q Consensus 115 ~~~~~~~~~s-~~lk~~~~~~~~~~~~~~~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~ 193 (808)
++-+...|.. ||+|+++ ..+|.+++|-+..-.+...+++.+....-+++..+++. ..|-|++.-|.
T Consensus 21 nvFamf~q~QIqEfKEAF---------~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FL 87 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAF---------NLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFL 87 (171)
T ss_pred hHHHHhhHHHHHHHHHHH---------HHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHH
Confidence 5777777777 9999766 78999999999988888888888877777889888876 57999999888
Q ss_pred ccccC----CCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHH
Q 003589 194 ECIGM----NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269 (808)
Q Consensus 194 ~~lg~----~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l 269 (808)
-.+|- .+ +++.+...|.. +|.++ +|.|+-+.+.+.+...++.-.++++..+|+.+-.|..|.|+..+|..+|
T Consensus 88 TmfGekL~gtd-pe~~I~~AF~~-FD~~~--~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 88 TMFGEKLNGTD-PEEVILNAFKT-FDDEG--SGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHhcCCC-HHHHHHHHHHh-cCccC--CCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 77753 23 56667777884 66666 8999999999999999999999999999999999999999999999999
Q ss_pred H
Q 003589 270 S 270 (808)
Q Consensus 270 ~ 270 (808)
+
T Consensus 164 t 164 (171)
T KOG0031|consen 164 T 164 (171)
T ss_pred H
Confidence 7
No 127
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.27 E-value=2e-06 Score=90.15 Aligned_cols=142 Identities=12% Similarity=0.082 Sum_probs=113.0
Q ss_pred CCcCHHHHHHHHHhHc----CCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCC
Q 003589 165 GGAGWANVEKRFDEIT----ASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS 240 (808)
Q Consensus 165 ~~~~~~~l~~~F~~lD----~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~ 240 (808)
....|..+++..+.+. ..+.+.|-..||...+.... + ...+.+|. ++|+.+ +|.+||.|.+..+..++...
T Consensus 218 lkL~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpv-s-d~l~~~f~-LFde~~--tg~~D~re~v~~lavlc~p~ 292 (412)
T KOG4666|consen 218 LKLPLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPV-S-DKLAPTFM-LFDEGT--TGNGDYRETVKTLAVLCGPP 292 (412)
T ss_pred cCCChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecch-h-hhhhhhhh-eecCCC--CCcccHHHHhhhheeeeCCC
Confidence 3466777777665543 23678899999999987765 4 44677888 788877 99999999999998887654
Q ss_pred -hHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCcc
Q 003589 241 -FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (808)
Q Consensus 241 -~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~ 319 (808)
..+.++-+|++||.+-||.++.++|.-+++....-..+. +-.+|.+.|...||+|+++||.+++..+|++
T Consensus 293 ~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 293 VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred CcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceee---------ccccchhhhcccCcceeHHHHHHHHHhCchh
Confidence 577899999999999999999999999998543322222 1228889999999999999999999999987
Q ss_pred c
Q 003589 320 S 320 (808)
Q Consensus 320 ~ 320 (808)
.
T Consensus 364 a 364 (412)
T KOG4666|consen 364 A 364 (412)
T ss_pred h
Confidence 5
No 128
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.15 E-value=4.4e-06 Score=66.49 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=46.1
Q ss_pred CCcccHHHHHHHHHHhccC-ChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 221 GDTITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~-~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+|.|+.+||..++..++.. ..+++++.+|..+|.|++|+|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 7999999999999877777 7788899999999999999999999999885
No 129
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.13 E-value=1.2e-05 Score=87.73 Aligned_cols=158 Identities=16% Similarity=0.248 Sum_probs=105.8
Q ss_pred cccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccc---------cC------CC-C--CHH
Q 003589 143 FDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI---------GM------NK-D--SKD 204 (808)
Q Consensus 143 ~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---------g~------~~-~--~~~ 204 (808)
++-.++|.++..+- .|+...++.. ....+=.|+.+|.|+||.|+.+||.... |+ .. + .-+
T Consensus 208 ~~lg~~GLIsfSdY-iFLlTlLS~p-~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~ 285 (489)
T KOG2643|consen 208 YKLGESGLISFSDY-IFLLTLLSIP-ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVE 285 (489)
T ss_pred EEcCCCCeeeHHHH-HHHHHHHccC-cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhh
Confidence 45556666665543 2333332211 1335667888899999999999998764 22 00 0 012
Q ss_pred HHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHH
Q 003589 205 FAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQ 284 (808)
Q Consensus 205 ~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~ 284 (808)
....|-.-++-.++ +++++++||.+++..+. +|-++.=|..+|+..+|.|+..+|.++|-.....+...
T Consensus 286 ~nsaL~~yFFG~rg--~~kLs~deF~~F~e~Lq----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~----- 354 (489)
T KOG2643|consen 286 VNSALLTYFFGKRG--NGKLSIDEFLKFQENLQ----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKK----- 354 (489)
T ss_pred hhhhHHHHhhccCC--CccccHHHHHHHHHHHH----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHh-----
Confidence 22223333566777 99999999999998884 56677789999999999999999999987555444222
Q ss_pred HHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 003589 285 AEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (808)
Q Consensus 285 ~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~ 314 (808)
-+.+....-++++.+ +-.|+++||.+...
T Consensus 355 k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 355 KHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 223455566677766 55699999988764
No 130
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.12 E-value=4.1e-06 Score=67.11 Aligned_cols=61 Identities=30% Similarity=0.449 Sum_probs=47.2
Q ss_pred HHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 003589 245 LQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 313 (808)
Q Consensus 245 L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll 313 (808)
++.+|+.+|.|++|.|+.+|+..++..... . ..++.+..+++.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~----~----~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE----G----LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC----C----CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999998874321 1 123445568888999999999999998765
No 131
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.06 E-value=7.8e-06 Score=65.06 Aligned_cols=53 Identities=32% Similarity=0.463 Sum_probs=41.1
Q ss_pred CCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 256 ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 256 ~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
.+|+|+.+||+.++..... ..++ ++.++.+|..+|.|++|+|+|+||..+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~-~~~s------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGI-KDLS------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTS-SSSC------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCC-CCCC------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999953321 1133 233666999999999999999999999864
No 132
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.04 E-value=9.8e-06 Score=81.76 Aligned_cols=186 Identities=14% Similarity=0.188 Sum_probs=119.2
Q ss_pred HHhhhHHHHHhhhccCCCCCCCccccCchhhHHHHhhhhhhhccCC---CcCHHHHHHHHHhHcCCCCceEehhhccccc
Q 003589 120 IRQVSQELKRLASFAKKPQPPARFDRNKSAAAYALKGLKFISKTDG---GAGWANVEKRFDEITASTNGVLPRARFGECI 196 (808)
Q Consensus 120 ~~~~s~~lk~~~~~~~~~~~~~~~dr~~~~a~~al~~l~~i~~~~~---~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l 196 (808)
.+|.+.+|+.++ .+.|.+.++.++|.+..++|.++.. ++..++-+--|+..|+|+||.|+-+||+--+
T Consensus 96 prrsrrklmviF---------sKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 96 PRRSRRKLMVIF---------SKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred hhHHHHHHHHHH---------hhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 355566666555 6789999999999999999987652 3445667778999999999999999998543
Q ss_pred -cCCCCC----------------HHHHHHHHHHHHcccCCCC-----CcccHHHHHHHHHH-hccCChHHHHHHhchhhc
Q 003589 197 -GMNKDS----------------KDFAVELFDALTRRRNIQG-----DTITKDQLREFWDQ-ISDQSFDSRLQTFFDMVD 253 (808)
Q Consensus 197 -g~~~~~----------------~~~~~~lF~~l~d~d~~~~-----G~I~~~EF~~~~~~-l~~~~~de~L~~~F~~fD 253 (808)
.++..+ .++.+++.+.+.++++.-+ =-++-+||..++.- -+.+.-..-++.+...+|
T Consensus 167 laskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlD 246 (362)
T KOG4251|consen 167 LASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLD 246 (362)
T ss_pred HhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhc
Confidence 222101 1222333332222222101 12455888887652 233334455777889999
Q ss_pred CCCCCceeHHHHHHHHHhhhccCCccchH-HHHHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 003589 254 KDADGRITEDEVREIISLSASANKLSNIQ-KQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (808)
Q Consensus 254 kD~dG~It~eEf~~~l~~~~~~~~l~~~~-~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~ 314 (808)
+|||-.++..||....--...+..-..++ ...++..++.-+++|.|.||.++++|+...+.
T Consensus 247 qdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 247 QDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred cCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 99999999999876553111111111111 12334445566678999999999999988753
No 133
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.03 E-value=5.1e-06 Score=57.33 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=25.2
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+++.+|+.||+|+||+|+.+||..+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478999999999999999999999986
No 134
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.01 E-value=5.8e-05 Score=77.26 Aligned_cols=126 Identities=15% Similarity=0.104 Sum_probs=82.5
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCccccCCCCcccCCCCcchhhhhhchhhHHHHHHHHHHHHHH
Q 003589 438 PFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAF 517 (808)
Q Consensus 438 p~d~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~ 517 (808)
+.|+.+.+||++|..+++.+++|.+.++..+. .++ ....++ ........+.|.+++++++.+.
T Consensus 69 ~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~---------~~~-~~~~~~-------~i~~~~~i~~G~ia~~lLl~La 131 (205)
T PRK05419 69 GQPLLIRTRRLLGLWAFFYATLHLLSYLLLDL---------GLD-WSLLGK-------EIVKRPYITVGMAAFLILLPLA 131 (205)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------ccc-HHHHHH-------HHHhchHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999987764211 000 000000 1111122356888888888888
Q ss_pred HhcchhhhhccCCCCCcccccccchHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHh
Q 003589 518 TLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 596 (808)
Q Consensus 518 ~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~drl~R~~ 596 (808)
++|..+.||+. +| .|..+|.+..+++++.++|-.+.. .... .....|.++ +++++.-|+.+..
T Consensus 132 iTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~~ 194 (205)
T PRK05419 132 LTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKLR 194 (205)
T ss_pred HHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHHH
Confidence 99999988762 57 899999999998888899955321 1111 233456543 3455666777665
No 135
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.01 E-value=1.3e-05 Score=70.89 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcc-cCCCCCcccHHHHHHHHHH-hccCChH-HHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 205 FAVELFDALTRR-RNIQGDTITKDQLREFWDQ-ISDQSFD-SRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 205 ~~~~lF~~l~d~-d~~~~G~I~~~EF~~~~~~-l~~~~~d-e~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.+.+.|+. +|+ ++ +|+|+.+||..++.. ++....+ +.++.+|+..|.|+||.|+++||..+|.
T Consensus 9 ~l~~~F~~-fd~~~~--~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 9 TLVSNFHK-ASVKGG--KESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHH-HhCCCC--CCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 45677885 566 66 899999999999988 7665555 7899999999999999999999988886
No 136
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.98 E-value=2.1e-05 Score=70.29 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcccCCCCC-cccHHHHHHHHHHh-----ccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 205 FAVELFDALTRRRNIQGD-TITKDQLREFWDQI-----SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 205 ~~~~lF~~l~d~d~~~~G-~I~~~EF~~~~~~l-----~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.+.++|+.+++.|+ +| +|+.+||..++... .....++.+..+++.+|+|+||.|+++||..++.
T Consensus 11 ~~~~~F~~~dd~dg--dg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 11 TLIRIFHNYSGKEG--DRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHccCC--CCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 35667887666777 87 59999999998763 2334667899999999999999999999999986
No 137
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.97 E-value=2.2e-05 Score=69.42 Aligned_cols=64 Identities=16% Similarity=0.376 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcccCCCCC-cccHHHHHHHHHH-----hccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 205 FAVELFDALTRRRNIQGD-TITKDQLREFWDQ-----ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 205 ~~~~lF~~l~d~d~~~~G-~I~~~EF~~~~~~-----l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.+.++|+.++++++ +| .|+.+||..++.. ++....++.+..+++.+|+|+||.|+++||..++.
T Consensus 9 ~l~~aF~~fD~~dg--dG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 9 ALIDVFHQYSGREG--DKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHhcccCC--CcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35667885433666 88 5888888888887 66666777899999999999999999999888775
No 138
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.89 E-value=7.1e-05 Score=82.48 Aligned_cols=146 Identities=15% Similarity=0.251 Sum_probs=103.4
Q ss_pred HHHHHHHHHh---HcCCCCceEehhhccccc-cC---CCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCCh
Q 003589 169 WANVEKRFDE---ITASTNGVLPRARFGECI-GM---NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSF 241 (808)
Q Consensus 169 ~~~l~~~F~~---lD~d~dG~Is~~ef~~~l-g~---~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~ 241 (808)
-++++..|.+ .+.++.-..+.++|.... |+ .. .+....++...++|.-+ ||-|+|+||+.+=..++. +
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~-~n~~~v~Lla~iaD~tK--Dglisf~eF~afe~~lC~--p 106 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESN-FNDKIVRLLASIADQTK--DGLISFQEFRAFESVLCA--P 106 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhccccc-CChHHHHHHHhhhhhcc--cccccHHHHHHHHhhccC--c
Confidence 3445555544 455667788999998753 32 22 34456667776788666 899999999998776653 4
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCcc---------------------------chHHHHHHHHHHHHH
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS---------------------------NIQKQAEEYAALIME 294 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~---------------------------~~~~~~~e~~~~i~~ 294 (808)
|...+.+|+.||+.++|.+|.+++.+++....-.+... ...+-.+|.+.+.|+
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999996321111110 122223455678889
Q ss_pred hcCCCCCCceeHHHHHHHHHhCCcc
Q 003589 295 ELDPDHLGCIMIDNLEMLLLQAPAQ 319 (808)
Q Consensus 295 e~D~d~dG~Is~eEF~~ll~~~p~~ 319 (808)
+-|+.++|.|+--+|+..|-.....
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred HhcccCCCeeeeechHhhhhhhhhh
Confidence 9999999999999999888765433
No 139
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.87 E-value=2e-05 Score=86.01 Aligned_cols=155 Identities=14% Similarity=0.267 Sum_probs=103.2
Q ss_pred cccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccc----cCCCCC-HHHHHHHHHHHHccc
Q 003589 143 FDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECI----GMNKDS-KDFAVELFDALTRRR 217 (808)
Q Consensus 143 ~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~-~~~~~~lF~~l~d~d 217 (808)
|..++++..+.-|.++|+... +.+-++-.|..+|...+|.|+..+|++.+ +.+... ....+++-+.+.+
T Consensus 295 FG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~-- 368 (489)
T KOG2643|consen 295 FGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKD-- 368 (489)
T ss_pred hccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccC--
Confidence 566666666666666666553 23446677999998777999999999987 332101 1244555443221
Q ss_pred CCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcC
Q 003589 218 NIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELD 297 (808)
Q Consensus 218 ~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D 297 (808)
.+-.|+++||.++..-+.+-..-+-.-.+|. ...+.|+..||+++...... ..++ +..++.+|.-+|
T Consensus 369 --~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~----~Ag~~i~~~~f~raa~~vtG-veLS------dhVvdvvF~IFD 435 (489)
T KOG2643|consen 369 --DGKGISLQEFKAFFRFLNNLNDFDIALRFYH----MAGASIDEKTFQRAAKVVTG-VELS------DHVVDVVFTIFD 435 (489)
T ss_pred --CCCCcCHHHHHHHHHHHhhhhHHHHHHHHHH----HcCCCCCHHHHHHHHHHhcC-cccc------cceeeeEEEEEc
Confidence 1457999999998877665444333333443 34578999999999863322 2222 224455889999
Q ss_pred CCCCCceeHHHHHHHHHhC
Q 003589 298 PDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 298 ~d~dG~Is~eEF~~ll~~~ 316 (808)
.|+||.++++||..+|++.
T Consensus 436 ~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 436 ENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred cCCCCcccHHHHHHHHHHH
Confidence 9999999999999999864
No 140
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.86 E-value=4.2e-05 Score=68.18 Aligned_cols=65 Identities=17% Similarity=0.409 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcccCCCCC-cccHHHHHHHHHH-hcc----CChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 204 DFAVELFDALTRRRNIQGD-TITKDQLREFWDQ-ISD----QSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 204 ~~~~~lF~~l~d~d~~~~G-~I~~~EF~~~~~~-l~~----~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+.+.+.|+.++|+++ +| .|+.+||..++.. ++. ...++.++.+|+.+|.|++|.|+++||..++.
T Consensus 9 ~~l~~~F~~fDd~dg--~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 9 ETLINVFHAHSGKEG--DKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHhcccC--CCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 456778885444777 88 4888888888864 432 24567889999999999999999999988886
No 141
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.86 E-value=4e-05 Score=67.73 Aligned_cols=69 Identities=13% Similarity=0.296 Sum_probs=51.3
Q ss_pred HHHHhchhhcCC--CCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 244 RLQTFFDMVDKD--ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 244 ~L~~~F~~fDkD--~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
.+-..|..|+.+ .+|+|+.+||+.++....... .+ ....++.++.+|+++|.|++|.|+|+||..+|..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~-~t--~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF-LK--KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh-hc--cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 466789999865 489999999999996322111 11 0112455677999999999999999999999874
No 142
>PF14658 EF-hand_9: EF-hand domain
Probab=97.85 E-value=3.4e-05 Score=63.42 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=50.0
Q ss_pred HhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCC-CceeHHHHHHHHHh
Q 003589 247 TFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHL-GCIMIDNLEMLLLQ 315 (808)
Q Consensus 247 ~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~d-G~Is~eEF~~ll~~ 315 (808)
.+|++||.++.|.|...++...|+..+..+. + +. .++.+..++|+++. |.|+++.|...|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p-~--e~----~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP-E--ES----ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC-c--HH----HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999986654221 1 22 34447788999998 99999999999985
No 143
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.85 E-value=5.6e-05 Score=60.36 Aligned_cols=61 Identities=26% Similarity=0.437 Sum_probs=52.8
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHH
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l 269 (808)
+..+|+ ..|.++ +|.|+++||..++..++....++.++.+|+.+|.|++|.|+.+||..++
T Consensus 2 ~~~~f~-~~d~~~--~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFR-LFDKDG--DGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHH-HhCCCC--CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 356788 466666 8999999999999999888888999999999999999999999997765
No 144
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.85 E-value=2.6e-05 Score=70.07 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=35.3
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+.++|+. .|.++ +|.|+++|+..++... +..+++++.+|..+|.|++|.|+++||..++.
T Consensus 12 l~~~F~~-~D~d~--~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 12 YEQIFRS-LDKNQ--DGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHH-hCCCC--CCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 4445553 44444 5666666666666553 23445566666666666666666666666665
No 145
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.83 E-value=4e-05 Score=83.35 Aligned_cols=129 Identities=17% Similarity=0.261 Sum_probs=96.7
Q ss_pred CCCCccccCchhhHHHHhhhhhhhccC-CCcCHHHHHHHHHhHcCCCCceEehhhccccccCC---------------CC
Q 003589 138 QPPARFDRNKSAAAYALKGLKFISKTD-GGAGWANVEKRFDEITASTNGVLPRARFGECIGMN---------------KD 201 (808)
Q Consensus 138 ~~~~~~dr~~~~a~~al~~l~~i~~~~-~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~---------------~~ 201 (808)
..|+++|-.++|.+..++--.++.+.. -+..|..+.......+ .||.+...+..+.+... -
T Consensus 468 ~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s--~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr- 544 (631)
T KOG0377|consen 468 DEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGS--DDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR- 544 (631)
T ss_pred HHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCC--cCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh-
Confidence 345789999999988877766666543 4678888887766655 57788766655544111 1
Q ss_pred CHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccC----ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhh
Q 003589 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ----SFDSRLQTFFDMVDKDADGRITEDEVREIISLS 272 (808)
Q Consensus 202 ~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~----~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~ 272 (808)
.+..++.+|++ .|.|+ +|.|+.+||.++|..++.. ..++++-..-+++|-|+||+|+.+||-++..+.
T Consensus 545 ~ks~LetiF~~-iD~D~--SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNI-IDADN--SGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHH-hccCC--CCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 22346788995 66776 9999999999999987543 457788888899999999999999999988743
No 146
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=97.79 E-value=2.8e-05 Score=76.02 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=38.8
Q ss_pred CCeEEEEEecccHHHHHHHHHHHHHhccccc------------------hHHHHHH---HHhhhc-CCCEEEEEEcCCC
Q 003589 719 YEVVLLVGLGIGATPMISIVKDIVNNMKAIE------------------EEEENDL---ENGRDT-GVNTTIIIIDNNY 775 (808)
Q Consensus 719 ~~~vllIagGiGITP~lsil~~l~~~~~~~~------------------~~~~~eL---~~l~~~-~~~~~i~vt~~~~ 775 (808)
|+++||||||+||||++|+++++++..++.. ..+.++| ..+... +.+..+|+|+...
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 7899999999999999999999988765111 1255444 344444 4557888887543
No 147
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.0002 Score=84.00 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=69.9
Q ss_pred eeeeeEeeecCC--CCeEEEEEEEcC--CccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccC-CCCCCCCCC
Q 003589 645 EWHPFSITSAPD--DDYLSVHIRTLG--DWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYG-APAQDYKEY 719 (808)
Q Consensus 645 ~~hPFSIas~p~--~~~l~l~Ir~~g--~~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG-~~~~~~~~~ 719 (808)
..|-|||+|.|. .+.++++|..+. .+.+.-.+. .|+++......++.+.|-.+-+ +|..+....
T Consensus 372 kPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~Gv-----------cS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~ 440 (587)
T COG0369 372 KPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGV-----------CSGYLADLLEEGDTIPVFVQPNKNFRLPEDPE 440 (587)
T ss_pred CCeeeEeccCCCCCCCeEEEEEEEEEeccCCCccccc-----------chHHHHhhhcCCCeEEEEeccCCccccCCCCC
Confidence 468899999995 466777766552 211111111 1223322222356788877666 555444444
Q ss_pred CeEEEEEecccHHHHHHHHHHHHHhccccc-------------hHHHHHHHHhhhcCCC
Q 003589 720 EVVLLVGLGIGATPMISIVKDIVNNMKAIE-------------EEEENDLENGRDTGVN 765 (808)
Q Consensus 720 ~~vllIagGiGITP~lsil~~l~~~~~~~~-------------~~~~~eL~~l~~~~~~ 765 (808)
.+++|||.||||||+.+++++-..+....+ -.+.+|+.+..+.+..
T Consensus 441 ~PiIMIG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~ 499 (587)
T COG0369 441 TPIIMIGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVL 499 (587)
T ss_pred CceEEEcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCc
Confidence 899999999999999999998777654322 2367888887666644
No 148
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.73 E-value=9.4e-05 Score=66.19 Aligned_cols=65 Identities=12% Similarity=0.358 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcccCCCCCcccHHHHHHHHHH-----hccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 205 FAVELFDALTRRRNIQGDTITKDQLREFWDQ-----ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 205 ~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~-----l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.+.++|+.+++.++ ++|.|+.+|+..++.. ++....++.++.+|+.+|.|++|.|+++||..++.
T Consensus 9 ~l~~~F~~~D~~dg-~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 9 SLILTFHRYAGKDG-DKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHhccCC-CCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 35567775443353 1488888888888775 23345677889999999999999999999988875
No 149
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.71 E-value=0.00027 Score=66.06 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCC--CCCceeHHHHHHHHHhhhccCCcc
Q 003589 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKD--ADGRITEDEVREIISLSASANKLS 279 (808)
Q Consensus 202 ~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD--~dG~It~eEf~~~l~~~~~~~~l~ 279 (808)
..+..+++|. ++|+.+ ||+|++.+.-..+..++....+.++.+.-..++++ +--+|++|+|--+++.... |+.
T Consensus 9 ~~~e~ke~F~-lfD~~g--D~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak-nk~- 83 (152)
T KOG0030|consen 9 QMEEFKEAFL-LFDRTG--DGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK-NKD- 83 (152)
T ss_pred hHHHHHHHHH-HHhccC--cccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh-ccc-
Confidence 4567899999 788888 99999999999999999999999999999999888 6679999999988874443 222
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCcc
Q 003589 280 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (808)
Q Consensus 280 ~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~ 319 (808)
+-..+++++ -++-+|++++|.|...|++.+|...-+-
T Consensus 84 --q~t~edfve-gLrvFDkeg~G~i~~aeLRhvLttlGek 120 (152)
T KOG0030|consen 84 --QGTYEDFVE-GLRVFDKEGNGTIMGAELRHVLTTLGEK 120 (152)
T ss_pred --cCcHHHHHH-HHHhhcccCCcceeHHHHHHHHHHHHhh
Confidence 234456655 6788999999999999999999865443
No 150
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.69 E-value=9.8e-05 Score=61.03 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=48.1
Q ss_pred HHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 207 VELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 207 ~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+++|+. .|.++ +|.|+.+|+..++..++ ..++.++.+|+.+|.|++|.|+.+||..++.
T Consensus 2 ~~~F~~-~D~~~--~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRS-LDPDG--DGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHH-hCCCC--CCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 356775 56666 89999999999888764 3667789999999999999999999988875
No 151
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.68 E-value=8.3e-05 Score=65.72 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=21.7
Q ss_pred CcccHHHHHHHHHH---hccCChHHHHHHhchhhcCCCCCceeHHHHHHHH
Q 003589 222 DTITKDQLREFWDQ---ISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269 (808)
Q Consensus 222 G~I~~~EF~~~~~~---l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l 269 (808)
|.|+.+||..++.. ++....++++..+|+.+|.|++|.|+++||-.++
T Consensus 27 g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 27 NTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred CEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 44444444444432 2333334444444444444444444444444444
No 152
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.68 E-value=7.2e-05 Score=73.76 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=49.0
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhc-cCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSAS-ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~-~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
.++.+|+.||.|.||+|+..|++.||..... ...+ -...+|+++|-|.||+|+|-||.-+.+..
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL---------~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHL---------GLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhH---------HHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4778899999999999999999999963321 1111 23348889999999999999998777754
No 153
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.68 E-value=5.2e-05 Score=52.31 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 289 AALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 289 ~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
++.+|+.+|.|+||+|+++||..+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345999999999999999999999975
No 154
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.66 E-value=0.00015 Score=64.12 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=49.1
Q ss_pred HHHHHHHHHcccCCCCC-cccHHHHHHHHHHh-----ccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 206 AVELFDALTRRRNIQGD-TITKDQLREFWDQI-----SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G-~I~~~EF~~~~~~l-----~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+..+|+..++.++ +| +|+.+||..++..- .....++.+..+++.+|.|+||.|+++||..++.
T Consensus 11 l~~~F~~y~~~dg--~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 11 LIAVFQKYAGKDG--DSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHhccCC--CcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4566775566665 54 88888888888765 2344567899999999999999999999998886
No 155
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.55 E-value=8e-05 Score=52.18 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=24.5
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+++.+|+.||+|+||+|+.+||+.+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999999999999999999997
No 156
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.53 E-value=6.9e-05 Score=75.77 Aligned_cols=135 Identities=11% Similarity=0.029 Sum_probs=94.4
Q ss_pred HHHHHHHHhHcCCCCceEehhhccccccCC------CCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCCh--
Q 003589 170 ANVEKRFDEITASTNGVLPRARFGECIGMN------KDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSF-- 241 (808)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~------~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~-- 241 (808)
+.+..+|.+.|.|.||+|+..|+++.+--+ . +.+..+..|++ .|.|+ +|.|+++||.--+......+.
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqe-ameeSkthFra-VDpdg--DGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQE-AMEESKTHFRA-VDPDG--DGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHH-HHhhhhhheee-eCCCC--CCceehhhhhhHHHhhcCcchHH
Confidence 568899999999999999999998876211 1 22233445774 67777 999999999876655432211
Q ss_pred ------------HHHHHHhchhhcCCCCCceeH---------HHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCC
Q 003589 242 ------------DSRLQTFFDMVDKDADGRITE---------DEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDH 300 (808)
Q Consensus 242 ------------de~L~~~F~~fDkD~dG~It~---------eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~ 300 (808)
-++=.+.|..-|+|.+|..+. +||-.++.-.. ....+..+++.|+..+|+|+
T Consensus 177 vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEh-------SrgmLrfmVkeivrdlDqdg 249 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEH-------SRGMLRFMVKEIVRDLDQDG 249 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHh-------hhhhHHHHHHHHHHHhccCC
Confidence 111234566667777777655 88877764111 13356677888999999999
Q ss_pred CCceeHHHHHHHHHh
Q 003589 301 LGCIMIDNLEMLLLQ 315 (808)
Q Consensus 301 dG~Is~eEF~~ll~~ 315 (808)
|..++..||..+.-.
T Consensus 250 DkqlSvpeFislpvG 264 (362)
T KOG4251|consen 250 DKQLSVPEFISLPVG 264 (362)
T ss_pred CeeecchhhhcCCCc
Confidence 999999999876543
No 157
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.49 E-value=0.0001 Score=49.00 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=22.5
Q ss_pred HHHhchhhcCCCCCceeHHHHHHHH
Q 003589 245 LQTFFDMVDKDADGRITEDEVREII 269 (808)
Q Consensus 245 L~~~F~~fDkD~dG~It~eEf~~~l 269 (808)
|+.+|+.+|+|+||.|+.+||++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5679999999999999999998864
No 158
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.48 E-value=0.00029 Score=65.47 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=35.8
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHH
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 269 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l 269 (808)
+.-.|.. .|.|+ ||.|+.+|+..+. ....+..+..+|+.+|.|+||+||.+||...+
T Consensus 50 l~w~F~~-lD~d~--DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQ-LDGNY--DGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHH-HCCCC--CCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4445553 34444 5666666665543 12235566778888888888888888887777
No 159
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.48 E-value=0.00084 Score=67.97 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=85.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCccccCCCCcccCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhc
Q 003589 441 DNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLA 520 (808)
Q Consensus 441 ~~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s 520 (808)
..+.+-|.+|..+++.+++|...|+..+. +++ ... ++ . +...-.....|++++++|..+.++|
T Consensus 72 ~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l---------~~~-~~~-~~-~-----d~~~rpyitiG~iaflll~pLalTS 134 (209)
T COG2717 72 KLIRIRRALGLWAFFYALLHFTAYLVLDL---------GLD-LAL-LG-L-----DLLKRPYITIGMIAFLLLIPLALTS 134 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcc-HHH-hh-H-----HHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999974321 111 101 11 0 1222334567999999999999999
Q ss_pred chhhhhccCCCCCcccccccchHHHHHHHHHHHHHHHHHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHh
Q 003589 521 TPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 596 (808)
Q Consensus 521 ~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~~vll~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~drl~R~~ 596 (808)
..++||+. + ..|..+|.+..+++++..+|-.+.. ... ....+.|.++ .+.|++.|+.+..
T Consensus 135 ~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~--K~~-~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 135 FKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSV--KID-MPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred hHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhc--Ccc-chHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999873 6 7899999999999999999976421 111 1123456443 4567777777665
No 160
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.47 E-value=0.00027 Score=79.19 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=47.9
Q ss_pred ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 240 ~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
...+.++.+|+.||+|+||+|+.+||.. ++.+|+.+|.|+||.|+++||...+..
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4578899999999999999999999831 133899999999999999999998874
No 161
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.44 E-value=0.00038 Score=61.33 Aligned_cols=63 Identities=17% Similarity=0.359 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcc--cCCCCCcccHHHHHHHHHH-hccC----ChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 205 FAVELFDALTRR--RNIQGDTITKDQLREFWDQ-ISDQ----SFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 205 ~~~~lF~~l~d~--d~~~~G~I~~~EF~~~~~~-l~~~----~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.+.++|.. .|. ++ +|.|+.+||..++.. ++.. ..++.+..+|..+|.|++|.|+++||..++.
T Consensus 9 ~l~~~F~~-~D~~~~~--~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 9 TIIDVFHK-YSGKEGD--KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHH-HhhccCC--CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 45667884 555 56 888888888888865 3322 2467889999999999999999999988876
No 162
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=97.37 E-value=0.0004 Score=81.58 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=49.7
Q ss_pred CeeeeeEeeecCC--CCeEEEEEEEcCCcc----HHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCC--
Q 003589 644 FEWHPFSITSAPD--DDYLSVHIRTLGDWT----RQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQD-- 715 (808)
Q Consensus 644 ~~~hPFSIas~p~--~~~l~l~Ir~~g~~T----~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~-- 715 (808)
.+.|+|||+|+|. .+.+.+.+-...--+ ..-++..+..+.+..+| ..+-.-+|-+.+...
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~------------~~~~~~~~~~~s~frlp 487 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG------------EKVPNPVPVGKSMFRLP 487 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc------------cccCcceeecccceecC
Confidence 4789999999983 555555544321100 01111221111111222 222223344443322
Q ss_pred CCCCCeEEEEEecccHHHHHHHHHHHHHh
Q 003589 716 YKEYEVVLLVGLGIGATPMISIVKDIVNN 744 (808)
Q Consensus 716 ~~~~~~vllIagGiGITP~lsil~~l~~~ 744 (808)
.+...+++|||-|+|||||+++++.....
T Consensus 488 ~dp~~PiIMIGpGTGiAPFRgFlq~r~~~ 516 (645)
T KOG1158|consen 488 SDPSTPIIMIGPGTGIAPFRGFLQERLFL 516 (645)
T ss_pred CCCCCcEEEEcCCCcchhhHHHHHHHHHh
Confidence 23456899999999999999999987765
No 163
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.32 E-value=0.00043 Score=61.02 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=47.8
Q ss_pred HHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 245 LQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 245 L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
+-..|..|-.| .|.++..||+++|+..... -+...+ -.+.++.+|+.+|.|+||.|+|+||..++-.
T Consensus 10 lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~-~l~~~~--d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFAGE-KNYLNRDDLQKLMEKEFSE-FLKNQN--DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHcCC-CCcCCHHHHHHHHHHHhHH-HHcCCC--CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45667777633 5699999999999743321 111101 1345677999999999999999999998864
No 164
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0007 Score=61.01 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=55.1
Q ss_pred ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhc---cC----CccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHH
Q 003589 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSAS---AN----KLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEML 312 (808)
Q Consensus 240 ~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~---~~----~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~l 312 (808)
++++.--..|.|.|.|++|+|+--|+..+++-... .+ .++ .+.+++.+++.+++.-|.|+||+|+|-||.+-
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~-sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLS-SEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCC-CHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34443445799999999999999999999973221 11 122 25667889999999999999999999999763
No 165
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.31 E-value=0.00083 Score=82.19 Aligned_cols=134 Identities=15% Similarity=0.227 Sum_probs=100.8
Q ss_pred CcCHHHHHHHHHhHcCCCCceEehhhccccc---c----CCC--CCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHh
Q 003589 166 GAGWANVEKRFDEITASTNGVLPRARFGECI---G----MNK--DSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (808)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g----~~~--~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (808)
++...+..-+|+-+|.+.+|.++.++|..|| | |.+ +.+...+++++ +.|.+. +|.|+..||.++|..-
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld-~vDP~r--~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILD-LVDPNR--DGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHH-hcCCCC--cCcccHHHHHHHHHhc
Confidence 4566889999999999999999999999998 2 211 12345677888 466655 8999999999998754
Q ss_pred c-c-CChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCC----CCCCceeHHHHH
Q 003589 237 S-D-QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDP----DHLGCIMIDNLE 310 (808)
Q Consensus 237 ~-~-~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~----d~dG~Is~eEF~ 310 (808)
- . -..+++++.+|+..|. +.-||+.+|+..-|+ .++++=++..|=..+|+ ...++++|.+|.
T Consensus 2326 ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~lt-----------reqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv 2393 (2399)
T KOG0040|consen 2326 ETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLT-----------REQAEFCMSKMKPYAETSSGRSDQVALDYKDFV 2393 (2399)
T ss_pred ccccccchHHHHHHHHHhhc-CCccccHHHHHhcCC-----------HHHHHHHHHHhhhhcccccCCCccccccHHHHH
Confidence 2 1 2345699999999999 888999999765553 45566666666666676 345679999998
Q ss_pred HHHH
Q 003589 311 MLLL 314 (808)
Q Consensus 311 ~ll~ 314 (808)
.-+-
T Consensus 2394 ~sl~ 2397 (2399)
T KOG0040|consen 2394 NSLF 2397 (2399)
T ss_pred HHHh
Confidence 7553
No 166
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.23 E-value=0.00095 Score=58.99 Aligned_cols=65 Identities=15% Similarity=0.402 Sum_probs=49.2
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHH-HhccCCh----HHHHHHhchhhcCCCCCceeHHHHHHHHHh
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWD-QISDQSF----DSRLQTFFDMVDKDADGRITEDEVREIISL 271 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~-~l~~~~~----de~L~~~F~~fDkD~dG~It~eEf~~~l~~ 271 (808)
+.++|...+.+++ .+|.|+.+||..++. .++.... ++.+..+|+.+|.|++|.|+++||..++..
T Consensus 10 ~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 10 IINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4456775444432 368999999999886 4443333 788999999999999999999999988863
No 167
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.06 E-value=0.00073 Score=63.47 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=68.2
Q ss_pred hHcCCCCceEehhhccccc----cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCC-hHHH----HHHh
Q 003589 178 EITASTNGVLPRARFGECI----GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS-FDSR----LQTF 248 (808)
Q Consensus 178 ~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~-~de~----L~~~ 248 (808)
.+..|++|.+++++|.+.+ .+.+ .+.-+.-.|+ +.|-|+ ++.|.-+++...+..+.+.. .+++ +...
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~AP-rdlK~~YAFk-IYDfd~--D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAP-RDLKAKYAFK-IYDFDG--DEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhCh-HHhhhhheeE-EeecCC--CCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 3446799999999999887 3333 3333444566 577777 99999999999999887653 3333 4667
Q ss_pred chhhcCCCCCceeHHHHHHHHH
Q 003589 249 FDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 249 F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.+..|.||||+++..||.+++.
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHH
Confidence 8888999999999999999985
No 168
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.94 E-value=0.0021 Score=50.10 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 223 TITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 223 ~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+++|+|...++..+.-...++.+..+|+.+|++++|++..+||.++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 478999999999998888999999999999999999999999999886
No 169
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.91 E-value=0.0011 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHhcCCCCCCceeHHHHHHHH
Q 003589 291 LIMEELDPDHLGCIMIDNLEMLL 313 (808)
Q Consensus 291 ~i~~e~D~d~dG~Is~eEF~~ll 313 (808)
.+|+.+|.|+||.|+.+||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 48999999999999999999865
No 170
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.76 E-value=0.0015 Score=73.30 Aligned_cols=57 Identities=28% Similarity=0.400 Sum_probs=48.6
Q ss_pred cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 197 GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 197 g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
|... -+..++.+|. +.|.++ +|.|+.+||.. +..+|+.+|.|+||.|+.+||.+.+.
T Consensus 328 ~~~~-~~~~l~~aF~-~~D~dg--dG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 328 GGEA-FTHAAQEIFR-LYDLDG--DGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred ccCh-hhHHHHHHHH-HhCCCC--CCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4444 5677889999 588888 99999999952 57789999999999999999999986
No 171
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.67 E-value=0.0058 Score=67.90 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=84.2
Q ss_pred cccCchhhHHHHhhhhhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccccCC---------CCCHHHHHHHHHHH
Q 003589 143 FDRNKSAAAYALKGLKFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMN---------KDSKDFAVELFDAL 213 (808)
Q Consensus 143 ~dr~~~~a~~al~~l~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~---------~~~~~~~~~lF~~l 213 (808)
-|.+++|-++..+.. ++.......+ ...+..|+.+|..++|.++.+++++.++.. - +.++++..|..
T Consensus 83 aD~tKDglisf~eF~-afe~~lC~pD-al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~-d~efI~~~Fg~- 158 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFR-AFESVLCAPD-ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNW-DSEFIKLHFGD- 158 (694)
T ss_pred hhhcccccccHHHHH-HHHhhccCch-HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccC-CcchHHHHhhh-
Confidence 567788887766653 3333332211 235677888888889999999999988532 2 45777777773
Q ss_pred HcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 214 TRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 214 ~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
++ .-.++|.||.+++..+. +|+.+++|+..|+.++|+||.=+|+.+|.
T Consensus 159 -~~----~r~~ny~~f~Q~lh~~~----~E~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 159 -IR----KRHLNYAEFTQFLHEFQ----LEHAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred -HH----HHhccHHHHHHHHHHHH----HHHHHHHHHHhcccCCCeeeeechHhhhh
Confidence 22 34789999999887763 56788999999999999999999999886
No 172
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.60 E-value=0.0049 Score=56.16 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=56.5
Q ss_pred hHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCccc
Q 003589 241 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (808)
Q Consensus 241 ~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~ 320 (808)
..++...+|+..|. ++|+|+-++.+.++..+ +++ .+ .+..|..-.|.|+||+++++||...|.-.-..+
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~--~~----~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GLP--RD----VLAQIWNLADIDNDGKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TSS--HH----HHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CCC--HH----HHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 34667889998884 68999999999988632 333 23 344477779999999999999998876432111
Q ss_pred cCCCCCccccccccccCCCCCC
Q 003589 321 VKGGESRNLSHMLSQKLKPTQF 342 (808)
Q Consensus 321 ~~~~~~~~ls~~ls~~l~p~~~ 342 (808)
. +....+...|...|-|...
T Consensus 77 ~--~~~~~lP~~LP~~L~p~s~ 96 (104)
T PF12763_consen 77 N--GNGKPLPSSLPPSLIPPSK 96 (104)
T ss_dssp H--HTTS---SSSSGGGSSSCG
T ss_pred c--CCCCCCchhcCHHHCCCCc
Confidence 1 1223455555555555443
No 173
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.36 E-value=0.0085 Score=52.94 Aligned_cols=64 Identities=6% Similarity=0.076 Sum_probs=40.6
Q ss_pred HHHHHHHHHhHcCCCCceEehhhccccc--------cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhc
Q 003589 169 WANVEKRFDEITASTNGVLPRARFGECI--------GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQIS 237 (808)
Q Consensus 169 ~~~l~~~F~~lD~d~dG~Is~~ef~~~l--------g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~ 237 (808)
+..+-..|.+++. +++.++..||++.+ +... ++..++++|+.+ |.++ ||.|+|+||...+..+.
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~-d~~~vd~im~~L-D~n~--Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQN-DPMAVDKIMKDL-DDCR--DGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCC-CHHHHHHHHHHh-CCCC--CCcCcHHHHHHHHHHHH
Confidence 3457778888875 45688888888776 2222 345666677643 3333 77777777777666553
No 174
>PF14658 EF-hand_9: EF-hand domain
Probab=96.33 E-value=0.011 Score=48.94 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=48.3
Q ss_pred HHHHHHcccCCCCCcccHHHHHHHHHHhcc-CChHHHHHHhchhhcCCCC-CceeHHHHHHHHH
Q 003589 209 LFDALTRRRNIQGDTITKDQLREFWDQISD-QSFDSRLQTFFDMVDKDAD-GRITEDEVREIIS 270 (808)
Q Consensus 209 lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~-~~~de~L~~~F~~fDkD~d-G~It~eEf~~~l~ 270 (808)
.|+ ++|.++ .|.|.-.++..++..++. ...|++|+.+.+.+|.+|. |.|+++.|..+|+
T Consensus 3 ~F~-~fD~~~--tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFD-AFDTQK--TGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chh-hcCCcC--CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 477 466666 788888888888888877 6678888888889988888 8899998888876
No 175
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.29 E-value=0.021 Score=56.88 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=57.2
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHH
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQA 285 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~ 285 (808)
...+|. ..|.+. ||.|++.|+..+|.+++.....--++.+...+|.|.||+||+.||--+...... ..+.. +...
T Consensus 101 ~~~~Fk-~yDe~r--DgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa-gEL~~-ds~~ 175 (244)
T KOG0041|consen 101 AESMFK-QYDEDR--DGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA-GELQE-DSGL 175 (244)
T ss_pred HHHHHH-Hhcccc--cccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc-ccccc-chHH
Confidence 345566 355555 777777777777777766666556777778888888888888887666653322 11111 1111
Q ss_pred HHHHHHHHHhcCCCCCCceeHHHHH
Q 003589 286 EEYAALIMEELDPDHLGCIMIDNLE 310 (808)
Q Consensus 286 ~e~~~~i~~e~D~d~dG~Is~eEF~ 310 (808)
..++ =..++|..+.|.---.+|-
T Consensus 176 ~~LA--r~~eVDVskeGV~GAknFF 198 (244)
T KOG0041|consen 176 LRLA--RLSEVDVSKEGVSGAKNFF 198 (244)
T ss_pred HHHH--HhcccchhhhhhhhHHHHH
Confidence 1111 2345677777765555544
No 176
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.073 Score=56.29 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=89.3
Q ss_pred cceeEEEEEEEEecCCEEEEEEEcCCCccc---C-CCCEEEEEeccCCC--------------------CeeeeeEeeec
Q 003589 599 SIKAVSIQKVAVYPGNVLALHMSKPDRFRY---K-SGQYMFVNCAAVSP--------------------FEWHPFSITSA 654 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~~v~~l~l~~p~~~~~---~-pGQyv~l~~p~~~~--------------------~~~hPFSIas~ 654 (808)
..+.++|+.++.+++++++++|..+....+ . .+||+.|.+|..+. .-.|+|||-+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 346889999999999999999998874333 3 45599999975421 12689999765
Q ss_pred -CCCCeE--EEEEEEcCC-ccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCCCCCCCCCCeEEEEEeccc
Q 003589 655 -PDDDYL--SVHIRTLGD-WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAPAQDYKEYEVVLLVGLGIG 730 (808)
Q Consensus 655 -p~~~~l--~l~Ir~~g~-~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~~~~~~~~~~vllIagGiG 730 (808)
++.+++ .|++-..++ -+..-.+ .+.|+++.|-||-|...+ ...++.++|||==++
T Consensus 96 d~~~~e~~vDfVlH~~~gpas~WA~~--------------------a~~GD~l~i~GP~g~~~p-~~~~~~~lLigDetA 154 (265)
T COG2375 96 DAAAGELDVDFVLHGEGGPASRWART--------------------AQPGDTLTIMGPRGSLVP-PEAADWYLLIGDETA 154 (265)
T ss_pred cccccEEEEEEEEcCCCCcchhhHhh--------------------CCCCCEEEEeCCCCCCCC-CCCcceEEEeccccc
Confidence 344544 444332222 1111111 124699999999999665 457889999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 003589 731 ATPMISIVKDIVNNMK 746 (808)
Q Consensus 731 ITP~lsil~~l~~~~~ 746 (808)
+-.+..+|+++-...+
T Consensus 155 lPAIa~iLE~lp~~~~ 170 (265)
T COG2375 155 LPAIARILETLPADTP 170 (265)
T ss_pred hHHHHHHHHhCCCCCc
Confidence 9999999998766543
No 177
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=96.24 E-value=0.0097 Score=66.59 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=56.4
Q ss_pred EeccCCCCeeeeeEeeecCCCCeEEEEEEEcCCccHHHH----HHhhhccCCCCCCCcccccccCCCCCEEEEecccCCC
Q 003589 637 NCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLR----TVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAP 712 (808)
Q Consensus 637 ~~p~~~~~~~hPFSIas~p~~~~l~l~Ir~~g~~T~~L~----~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~ 712 (808)
.+|.+ ..|.|||+|.|....++++|..+.= +..|+ ++.++....+.+| +.+.+.=--|..
T Consensus 362 ~~P~I---rPR~fSIas~~~~~~leL~VAiV~y-kT~l~~pRrGlCS~wl~sL~~g------------~~i~~~v~~g~l 425 (574)
T KOG1159|consen 362 LLPVI---RPRAFSIASSPGAHHLELLVAIVEY-KTILKEPRRGLCSNWLASLKPG------------DEIPIKVRPGTL 425 (574)
T ss_pred hcccc---ccceeeeccCCCCCceeEEEEEEEE-eeeccccccchhHHHHhhcCCC------------CeEEEEEecCcc
Confidence 34555 5699999999988888877754421 11110 1222212222333 445444334544
Q ss_pred CCCCCCCCeEEEEEecccHHHHHHHHHHHHHh
Q 003589 713 AQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 744 (808)
Q Consensus 713 ~~~~~~~~~vllIagGiGITP~lsil~~l~~~ 744 (808)
..+.....+++|||-|+||||+.|++++-+.+
T Consensus 426 ~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q 457 (574)
T KOG1159|consen 426 YFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ 457 (574)
T ss_pred ccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh
Confidence 43333456899999999999999999987643
No 178
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.16 E-value=0.016 Score=45.29 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=37.3
Q ss_pred ceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 259 RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 259 ~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
+++++|++.+++.. | + +.-++++..+|+++|.+++|.++-+||+.+.+.
T Consensus 1 kmsf~Evk~lLk~~---N-I----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM---N-I----EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT---T---------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---c-c----CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 47899999999743 1 1 123678999999999999999999999988753
No 179
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.14 E-value=0.007 Score=42.28 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 290 ALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 290 ~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
+.+|+.+|.|++|+|+.+||..+|++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45899999999999999999999984
No 180
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.11 E-value=0.0029 Score=58.60 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=44.1
Q ss_pred ccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHH
Q 003589 237 SDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 311 (808)
Q Consensus 237 ~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ 311 (808)
........+...|...|.|+||.++..|++.+.... . ..+..+...++..|.|+||.|++.|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l------~----~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL------M----PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT------S----TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH------h----hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 334456678899999999999999999988775422 1 1233455689999999999999999864
No 181
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.06 E-value=0.013 Score=53.39 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHh
Q 003589 221 GDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISL 271 (808)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~ 271 (808)
+|.|+-++-..++.+- +.+.+.|..++++.|.|+||+++.+||.-+|.+
T Consensus 23 ~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 23 DGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp TTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4566666665555443 344456666666666666777777776666553
No 182
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=95.84 E-value=0.08 Score=49.39 Aligned_cols=89 Identities=16% Similarity=0.230 Sum_probs=52.5
Q ss_pred EEEEEEEecCCEEEEEEEcCCC--cc-cCCCCEEEEEeccCCCC---------------------eeeeeEeeec-CCCC
Q 003589 604 SIQKVAVYPGNVLALHMSKPDR--FR-YKSGQYMFVNCAAVSPF---------------------EWHPFSITSA-PDDD 658 (808)
Q Consensus 604 ~i~~v~~l~~~v~~l~l~~p~~--~~-~~pGQyv~l~~p~~~~~---------------------~~hPFSIas~-p~~~ 658 (808)
+|+.++.+++++++|+|..+.- +. ..+|||+.|.+|....- ..|.|||-+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 4788999999999999998752 33 46999999999865321 4789999876 5667
Q ss_pred eEEEEEEEcCC---ccHHHHHHhhhccCCCCCCCcccccccCCCCCEEEEecccCCC
Q 003589 659 YLSVHIRTLGD---WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPEVLIDGPYGAP 712 (808)
Q Consensus 659 ~l~l~Ir~~g~---~T~~L~~~~~~~~~~~~~G~s~~l~~~~~~~~~v~i~GPyG~~ 712 (808)
++.|-+-..|+ -+...... + .|++|.|-||-|.|
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~A--------~------------pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARSA--------R------------PGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH----------------------TT-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhhC--------C------------CCCEEEEeCCCCCC
Confidence 88776666664 23322221 2 36899999998875
No 183
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.79 E-value=0.025 Score=63.61 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=53.3
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
.++..|...| |++|+|+..|+..++....... .-..+++++.++.+.+.|.+|.|+||||..++..-
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-----g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-----GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-----cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3777899999 9999999999999997433222 12346677779999999999999999999977643
No 184
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.43 E-value=0.017 Score=71.42 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=56.0
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCc
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~ 318 (808)
+...+|+.||++.+|.++..+|+..++..+..- ...-+.+.+...+.+|.-+||+.+|||+..||.+.|-.+..
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~l-pmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDL-PMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCC-cccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 356789999999999999999999998544322 11111122335666899999999999999999999987643
No 185
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.03 E-value=0.045 Score=57.65 Aligned_cols=89 Identities=21% Similarity=0.403 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHhccCChH-HHHHHhchhhcCCCCCceeHHHHHHHHHhhhc-----cCCccchHHHHHH---HHHHHHHh
Q 003589 225 TKDQLREFWDQISDQSFD-SRLQTFFDMVDKDADGRITEDEVREIISLSAS-----ANKLSNIQKQAEE---YAALIMEE 295 (808)
Q Consensus 225 ~~~EF~~~~~~l~~~~~d-e~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~-----~~~l~~~~~~~~e---~~~~i~~e 295 (808)
+.+++..+|...-...++ =.-+.+|...|.|+||+++..|+..+++.... .|.....++..++ +-+.+|++
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 678888898876333222 23578999999999999999999999874322 2222222222232 34678999
Q ss_pred cCCCCCCceeHHHHHHHH
Q 003589 296 LDPDHLGCIMIDNLEMLL 313 (808)
Q Consensus 296 ~D~d~dG~Is~eEF~~ll 313 (808)
+|.|.|--|+++||..--
T Consensus 305 vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cccchhhhhhHHHHHhhh
Confidence 999999999999997643
No 186
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.97 E-value=0.28 Score=58.15 Aligned_cols=160 Identities=14% Similarity=0.242 Sum_probs=109.1
Q ss_pred ccCchhhHHHHhhhhhhhccCC-----CcCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHc
Q 003589 144 DRNKSAAAYALKGLKFISKTDG-----GAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTR 215 (808)
Q Consensus 144 dr~~~~a~~al~~l~~i~~~~~-----~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d 215 (808)
.-.+.-|.....+++.+.+... +..-.++...|+..|++++|.+++++-.+++ .+.- +...+..+|+.. +
T Consensus 105 a~s~~~a~~wV~gl~~l~s~~~~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-~~~~~~~~f~e~-~ 182 (746)
T KOG0169|consen 105 ANSKEDANIWVSGLRKLISRSKSMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-SESKARRLFKES-D 182 (746)
T ss_pred CCCHHHHHHHhhhHHHHHhccchhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh-hHHHHHHHHHHH-H
Confidence 3334444445556665554321 2344789999999999999999999988876 2222 345677788854 3
Q ss_pred ccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHh
Q 003589 216 RRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEE 295 (808)
Q Consensus 216 ~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e 295 (808)
.. +++++..++|..+...+.... ++..+|..+=.+ .++++.+++.++++......... . +.++.|+++
T Consensus 183 ~~--~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~--~----~~ae~ii~~ 250 (746)
T KOG0169|consen 183 NS--QTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGAT--L----DEAEEIIER 250 (746)
T ss_pred hh--ccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhccccccc--H----HHHHHHHHH
Confidence 33 379999999999988886655 577788777544 89999999999998553333222 2 233345544
Q ss_pred cCC----CCCCceeHHHHHHHHHhCC
Q 003589 296 LDP----DHLGCIMIDNLEMLLLQAP 317 (808)
Q Consensus 296 ~D~----d~dG~Is~eEF~~ll~~~p 317 (808)
+-+ -..+.++++.|...|....
T Consensus 251 ~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 251 YEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred hhhhhhccccceecHHHHHHHhcCcc
Confidence 433 3556799999999887653
No 187
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.96 E-value=0.023 Score=37.30 Aligned_cols=26 Identities=35% Similarity=0.736 Sum_probs=23.6
Q ss_pred HHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 245 LQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 245 L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
++.+|+.+|.|++|.|+.+||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 67899999999999999999998885
No 188
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.60 E-value=0.11 Score=58.12 Aligned_cols=133 Identities=14% Similarity=0.183 Sum_probs=85.0
Q ss_pred HHHHHHHhHcCCCCceEehhhccccc------c------CCCC----CHHHHHHHHHHHHcccCCCCCcccHHHHHHHHH
Q 003589 171 NVEKRFDEITASTNGVLPRARFGECI------G------MNKD----SKDFAVELFDALTRRRNIQGDTITKDQLREFWD 234 (808)
Q Consensus 171 ~l~~~F~~lD~d~dG~Is~~ef~~~l------g------~~~~----~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~ 234 (808)
.+++.|--++....|+|++.++..+. . ++.. +-+-...++..+-.-|++++|.|+.+++..+-.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 46777878888889999999987653 0 1100 111122332222223445599999999887654
Q ss_pred HhccCChHHHHHHhch----hhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHH
Q 003589 235 QISDQSFDSRLQTFFD----MVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLE 310 (808)
Q Consensus 235 ~l~~~~~de~L~~~F~----~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~ 310 (808)
+.. .+--+..+|. .+=.-.+|+++.++|-.++-........ .-++..|+-+|.|+||.++.+|..
T Consensus 306 ~tl---t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~--------~SleYwFrclDld~~G~Lt~~el~ 374 (493)
T KOG2562|consen 306 HTL---TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTP--------ASLEYWFRCLDLDGDGILTLNELR 374 (493)
T ss_pred cch---hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCc--------cchhhheeeeeccCCCcccHHHHH
Confidence 432 2334677887 4445678999999999988633221111 113349999999999999998876
Q ss_pred HHHH
Q 003589 311 MLLL 314 (808)
Q Consensus 311 ~ll~ 314 (808)
-+..
T Consensus 375 ~fye 378 (493)
T KOG2562|consen 375 YFYE 378 (493)
T ss_pred HHHH
Confidence 5544
No 189
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.35 E-value=0.058 Score=35.30 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 290 ALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 290 ~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
+.+|+.+|.|++|+|+++||..+++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 34899999999999999999999874
No 190
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=93.72 E-value=0.16 Score=47.13 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=23.3
Q ss_pred CcCHHHHHHHHHhHcCCCCceEehhhcccccc
Q 003589 166 GAGWANVEKRFDEITASTNGVLPRARFGECIG 197 (808)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg 197 (808)
......+.-.|..+|.|+||.|+..|+.....
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGS
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHH
Confidence 34557788999999999999999999987765
No 191
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.40 E-value=1 Score=54.35 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=55.8
Q ss_pred CceEehhhccccccCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhc--------cCChHHHHHHhchhhcCC
Q 003589 184 NGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQIS--------DQSFDSRLQTFFDMVDKD 255 (808)
Q Consensus 184 dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~--------~~~~de~L~~~F~~fDkD 255 (808)
+| ++.+||. ..... -+.-.+-+|+. .|. .+|.++.+|+..+..... ....++....+++..|.+
T Consensus 2 ~~-~~~~~~~-~~~~~--~d~~l~~~f~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-ITDCS--YDDKLQTFFDM-YDK---GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-ccCCC--hhHHHHHHHHH-Hhh---hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8888888 33333 23445677774 553 388999999888776442 122345567789999999
Q ss_pred CCCceeHHHHHHHHH
Q 003589 256 ADGRITEDEVREIIS 270 (808)
Q Consensus 256 ~dG~It~eEf~~~l~ 270 (808)
+.|+++.+++..++.
T Consensus 74 ~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 74 HKGYITNEDLEILLL 88 (646)
T ss_pred ccceeeecchhHHHH
Confidence 999999999888875
No 192
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=91.05 E-value=0.37 Score=54.67 Aligned_cols=76 Identities=4% Similarity=0.138 Sum_probs=54.8
Q ss_pred hhhhccCCCcCHHHHHHHHHhHcCCCCceEehhhccccccCC--C---CCHHHHHHHHHHHHcccCCCCCcccHHHHHHH
Q 003589 158 KFISKTDGGAGWANVEKRFDEITASTNGVLPRARFGECIGMN--K---DSKDFAVELFDALTRRRNIQGDTITKDQLREF 232 (808)
Q Consensus 158 ~~i~~~~~~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~--~---~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~ 232 (808)
.+..+..+.++..++++.|.++| |++|+++..|+.+.+... . ...++++++... .+.|. +|.|+|+||+..
T Consensus 7 ~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~-~~~~~--~g~v~fe~f~~~ 82 (627)
T KOG0046|consen 7 PWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGE-VGVDA--DGRVEFEEFVGI 82 (627)
T ss_pred hhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhc-cCCCc--CCccCHHHHHHH
Confidence 34455567788899999999999 899999999998887211 1 024555665552 34444 899999999997
Q ss_pred HHHhc
Q 003589 233 WDQIS 237 (808)
Q Consensus 233 ~~~l~ 237 (808)
+..+.
T Consensus 83 ~~~l~ 87 (627)
T KOG0046|consen 83 FLNLK 87 (627)
T ss_pred HHhhh
Confidence 66553
No 193
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.27 E-value=1 Score=39.04 Aligned_cols=68 Identities=19% Similarity=0.447 Sum_probs=44.7
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCC----CCCceeHHHHHHHHHhCCc
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPD----HLGCIMIDNLEMLLLQAPA 318 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d----~dG~Is~eEF~~ll~~~p~ 318 (808)
+++.+|+.+-. +.+.||.++|.++|...-.....+ .+++++ +|+.+.++ ..+.+++++|...|....+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~--~~~~~~----li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLT--DEQAKE----LIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSS--HHHHHH----HHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCc--HHHHHH----HHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 36778888844 788999999999987433222221 233333 45544433 5799999999999986543
No 194
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=88.83 E-value=1.5 Score=50.84 Aligned_cols=149 Identities=11% Similarity=0.172 Sum_probs=91.4
Q ss_pred CHHHHHHHHHhHcCCCCceEehhhcc----ccccCCCCCHHHHHHHHHHHHc--ccCCCCCcccHHHHHHHHHHhccCCh
Q 003589 168 GWANVEKRFDEITASTNGVLPRARFG----ECIGMNKDSKDFAVELFDALTR--RRNIQGDTITKDQLREFWDQISDQSF 241 (808)
Q Consensus 168 ~~~~l~~~F~~lD~d~dG~Is~~ef~----~~lg~~~~~~~~~~~lF~~l~d--~d~~~~G~I~~~EF~~~~~~l~~~~~ 241 (808)
-...+..+|.-.|.|+||.++=.|+. .|++... ...++..+-..+.+ .+|..++.++...|+.......+...
T Consensus 193 ~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl-~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr 271 (625)
T KOG1707|consen 193 CVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPL-DPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGR 271 (625)
T ss_pred HHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCC-CHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcc
Confidence 34678899999999999999977765 3666554 33334444332222 24444577888888877665544444
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCcc
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~ 319 (808)
.|..-.+-+.|--+.+=.++.+=+..-++ .......++....-+.+..+|..+|.|+||.++-+||..+....|.-
T Consensus 272 ~EttW~iLR~fgY~DsleL~~~~l~p~~~--~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 272 HETTWTILRKFGYTDSLELTDEYLPPRLK--VPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred ccchhhhhhhcCCcchhhhhhhhcCcccc--CCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 44444444555444443443332221111 00111112233345567779999999999999999999999998864
No 195
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=88.70 E-value=0.85 Score=48.93 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=74.4
Q ss_pred HHHHHHHHhHcCCCCceEehhhccccc----cCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHH
Q 003589 170 ANVEKRFDEITASTNGVLPRARFGECI----GMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRL 245 (808)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~l----g~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L 245 (808)
..++.+|..+|.+.+|.+++.|-...+ +... ....++-.|+ +++.+. ||.+.-.+|...+. ...+-.+-++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~-t~~iiq~afk-~f~v~e--Dg~~ge~~ls~ilq-~~lgv~~l~v 333 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPV-TPVIIQYAFK-RFSVAE--DGISGEHILSLILQ-VVLGVEVLRV 333 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCC-cHHHHHHHHH-hccccc--ccccchHHHHHHHH-HhcCcceeec
Confidence 568899999999999999988877665 3333 5566777788 577666 88998877776554 3334445557
Q ss_pred HHhchhhcCCCCCceeHHHHHHHHH
Q 003589 246 QTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 246 ~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
--.|...|...||+|+.+||+.++.
T Consensus 334 ~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 334 PVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred cccchhhhcccCcceeHHHHHHHHH
Confidence 7789999999999999999999986
No 196
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=1.2 Score=40.68 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=39.3
Q ss_pred HHHHHcccCCCCCcccHHHHHHHHHHhcc----------CChHHHHHHhchh----hcCCCCCceeHHHHHH
Q 003589 210 FDALTRRRNIQGDTITKDQLREFWDQISD----------QSFDSRLQTFFDM----VDKDADGRITEDEVRE 267 (808)
Q Consensus 210 F~~l~d~d~~~~G~I~~~EF~~~~~~l~~----------~~~de~L~~~F~~----fDkD~dG~It~eEf~~ 267 (808)
|. +.|.|+ ++.++=-|+..++.+.-+ ...+.+++.+.+. -|.|+||+|++.||-+
T Consensus 73 F~-MHDldk--nn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 73 FS-MHDLDK--NNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hh-hhccCc--CCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 55 577777 788888888888776543 1346666666554 4899999999999754
No 197
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=87.23 E-value=1.2 Score=52.00 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHH
Q 003589 202 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEV 265 (808)
Q Consensus 202 ~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf 265 (808)
+..+++++|+. .|..+ +|.|||.+|+..+..+..+.--+++..+|+++|.+++ ..+.+|.
T Consensus 553 s~~~~~rlF~l-~D~s~--~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 553 SLIFLERLFRL-LDDSM--TGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHh-cccCC--cceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 55788999994 55555 8999999999999999999999999999999999999 9999997
No 198
>PLN02952 phosphoinositide phospholipase C
Probab=86.30 E-value=3.5 Score=48.95 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=62.0
Q ss_pred CCcccHHHHHHHHHHhcc--CChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcC-
Q 003589 221 GDTITKDQLREFWDQISD--QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELD- 297 (808)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~--~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D- 297 (808)
.|.++|+||..+...+.. ....+++..+|..+-.++ +.+|.++|..+|...-.....+ .+.++++++.+++...
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~--~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCT--LAEAQRIVEEVINRRHH 90 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCC--HHHHHHHHHHHHhhccc
Confidence 689999999998887743 346788999999995444 6899999999997443222111 2334444444433322
Q ss_pred --CCCCCceeHHHHHHHHHh
Q 003589 298 --PDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 298 --~d~dG~Is~eEF~~ll~~ 315 (808)
..+.+.++++.|...|..
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccCcCHHHHHHHHcC
Confidence 123356999999999974
No 199
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=3.9 Score=48.60 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=46.9
Q ss_pred HHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 003589 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (808)
Q Consensus 243 e~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~ 314 (808)
-+.+..|+..|+..+|++|-..-+.+|..+ ++. +.+ ++.|-.--|.|+||.++-+||.-.|-
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~Lp--q~~----LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQS----GLP--QNQ----LAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhc----CCc--hhh----HhhheeeeccCCCCcccHHHHHHHHH
Confidence 356789999999999999999988888632 222 222 33366668999999999999985553
No 200
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=85.78 E-value=0.67 Score=49.63 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=55.0
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCcc
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~ 319 (808)
-+..-|...|+|.++-|...|.+.+=....... ......+.+++-.|.|+|-.|+++|+...|...++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s-------~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS-------KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc-------cHHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 367789999999999999999776654333222 235566779999999999999999999999877764
No 201
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=83.79 E-value=1 Score=48.62 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
...+-.||...|.|.||.++..|++.+-. . .-|..++..|...|..+||.|+-+|+.....+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l---d---------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL---D---------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc---c---------CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 56789999999999999999999887642 1 124456669999999999999999999888754
No 202
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=82.03 E-value=2.6 Score=36.37 Aligned_cols=61 Identities=15% Similarity=0.351 Sum_probs=47.1
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHHHhccC--ChHHHHHHhchhhcCC----CCCceeHHHHHHHHH
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQ--SFDSRLQTFFDMVDKD----ADGRITEDEVREIIS 270 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~--~~de~L~~~F~~fDkD----~dG~It~eEf~~~l~ 270 (808)
++.+|+.+.. + .+.||.++|..++..-... ..++.++.+++.|..+ ..+.+|.++|...|.
T Consensus 2 i~~if~~ys~--~--~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS--D--KEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT--T--SSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC--C--CCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 5678886432 3 6899999999999766544 3578888999988765 479999999999985
No 203
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=79.24 E-value=10 Score=33.59 Aligned_cols=72 Identities=10% Similarity=0.203 Sum_probs=44.8
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhh-------ccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSA-------SANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~-------~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~ 314 (808)
++|++.+|+.+ .|++|.++..-|..++.... +..... -++..++..|+.. ...-.|+.++|...|+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg----~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFG----YIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT------HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcccccc----CcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 57899999999 78999999999988886321 111111 1455666788776 2566799999999999
Q ss_pred hCCccc
Q 003589 315 QAPAQS 320 (808)
Q Consensus 315 ~~p~~~ 320 (808)
..|..+
T Consensus 75 ~ePq~l 80 (90)
T PF09069_consen 75 SEPQSL 80 (90)
T ss_dssp T--TTT
T ss_pred hCCCee
Confidence 888654
No 204
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=78.24 E-value=0.94 Score=38.03 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=37.7
Q ss_pred ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcC-CC---CCCceeHHHHHH
Q 003589 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELD-PD---HLGCIMIDNLEM 311 (808)
Q Consensus 240 ~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D-~d---~dG~Is~eEF~~ 311 (808)
...+.+..+|+.. .++.++||.+||++.+. .+++ +++..-|.... ++ .-|..+|+.|..
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-----------pe~a-ey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-----------PEQA-EYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS------------CCCH-HHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC-----------cHHH-HHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3457899999999 88889999999998875 2334 33222222222 22 226788888864
No 205
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=76.58 E-value=16 Score=36.22 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=72.5
Q ss_pred HHHHHHHHhHcCCCCceEehhhccccc---cCCCCCHHHHHHHHHHHHc----ccCCCCCcccHHHHHHHHHHhc-----
Q 003589 170 ANVEKRFDEITASTNGVLPRARFGECI---GMNKDSKDFAVELFDALTR----RRNIQGDTITKDQLREFWDQIS----- 237 (808)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~~~~~~~~lF~~l~d----~d~~~~G~I~~~EF~~~~~~l~----- 237 (808)
..|++--.=+|.|+||.|...|--.++ |... +-.++.++.= .-....+.+--.-|.-.+..+.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~-----~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHG 81 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGI-----LLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHG 81 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCH-----HHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccC
Confidence 357777777899999999988866554 6653 1111111110 0000011111111211222221
Q ss_pred --------cCC-hHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCC-ccchHHHHHHHHHHHHHhcCCCCCCceeHH
Q 003589 238 --------DQS-FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANK-LSNIQKQAEEYAALIMEELDPDHLGCIMID 307 (808)
Q Consensus 238 --------~~~-~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~-l~~~~~~~~e~~~~i~~e~D~d~dG~Is~e 307 (808)
++. ..++.+.+|..+++.+.+.+|..|+.+|++.....+. ..-.....| .. +.-.+-.|+||.+.-|
T Consensus 82 SDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~E--W~-~~y~L~~d~dG~l~Ke 158 (174)
T PF05042_consen 82 SDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFE--WG-ALYILAKDKDGFLSKE 158 (174)
T ss_pred CCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhH--HH-HHHHHHcCcCCcEeHH
Confidence 111 1478999999999999999999999999974322111 111111111 11 1112345789999988
Q ss_pred HHHHHH
Q 003589 308 NLEMLL 313 (808)
Q Consensus 308 EF~~ll 313 (808)
+-+.+.
T Consensus 159 ~iR~vY 164 (174)
T PF05042_consen 159 DIRGVY 164 (174)
T ss_pred HHhhhc
Confidence 876543
No 206
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=74.56 E-value=9.8 Score=45.66 Aligned_cols=62 Identities=16% Similarity=0.350 Sum_probs=53.0
Q ss_pred HHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 206 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 206 ~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
+..+|+. +|++. +|.++++|-..+..++.-+..+.+++..|+..|.-++|++..+|+.+.-.
T Consensus 138 i~~~~~~-ad~~~--~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 138 IHSIFQE-ADKNK--NGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred HHHHHHH-Hcccc--ccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHH
Confidence 4556663 66555 99999999999999998888899999999999999999999999888765
No 207
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=72.40 E-value=6 Score=48.55 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=75.1
Q ss_pred CcCHHHHHHHHHhHcCCCCceEehhhccccc---cCCCC-CHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHh-ccCC
Q 003589 166 GAGWANVEKRFDEITASTNGVLPRARFGECI---GMNKD-SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI-SDQS 240 (808)
Q Consensus 166 ~~~~~~l~~~F~~lD~d~dG~Is~~ef~~~l---g~~~~-~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l-~~~~ 240 (808)
+....+++..|+..+....|.++.++|..|+ |.+.+ .+....+.|..+...|.+..|.+++.+|...+..- ...+
T Consensus 743 Q~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~ 822 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLD 822 (890)
T ss_pred HHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhc
Confidence 3455788888888888778899999999997 33320 13345666776655554335899999999998764 4456
Q ss_pred hHHHHHHhchhhcCCCCCceeHHHHHH
Q 003589 241 FDSRLQTFFDMVDKDADGRITEDEVRE 267 (808)
Q Consensus 241 ~de~L~~~F~~fDkD~dG~It~eEf~~ 267 (808)
.++++..+|...-++.. +|..+|+..
T Consensus 823 ~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 823 TELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 67888899999888777 899999766
No 208
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=66.26 E-value=15 Score=45.12 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=61.1
Q ss_pred HHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCccc
Q 003589 242 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (808)
Q Consensus 242 de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~ 320 (808)
.++++..|+.+|+...|-.+.+|+...+.... .+... +++....+..++.+.|++..|.+++++|...|.+....+
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~~e~--ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLG-YNTEE--EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL 821 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC-cccch--hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh
Confidence 46899999999999999999999998886332 23222 456677777888999999999999999999988765544
No 209
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=65.47 E-value=6.4 Score=42.45 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=42.0
Q ss_pred CCCCcccHHHHHHHHHHhccC-ChHHHHHHhchhhcCCCCCceeHHHHHHHHHh
Q 003589 219 IQGDTITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIISL 271 (808)
Q Consensus 219 ~~~G~I~~~EF~~~~~~l~~~-~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~ 271 (808)
|+++.|+..|+.-+=..+.+. ....-.+.+|+.+|.|+|-.||.+|++..|..
T Consensus 345 N~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 345 NSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 448899999877765555433 34566789999999999999999999988863
No 210
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=63.42 E-value=9.6 Score=41.47 Aligned_cols=59 Identities=7% Similarity=0.111 Sum_probs=32.7
Q ss_pred HHHHHHHHhHcCCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHH
Q 003589 170 ANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFW 233 (808)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~ 233 (808)
.++-=||+++|.|.||.|+.+|+..+---+ .+.=++..|+ .-|... ||.|+-+|+...+
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk--nE~CikpFfn-sCD~~k--Dg~iS~~EWC~CF 308 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELDK--NEACIKPFFN-SCDTYK--DGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhccC--chhHHHHHHh-hhcccc--cCccccchhhhhh
Confidence 346667777777777777777766543222 2233444455 244444 5666666655443
No 211
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.68 E-value=4.8 Score=50.14 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=48.4
Q ss_pred HHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCC
Q 003589 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 317 (808)
Q Consensus 243 e~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p 317 (808)
.+...+|...|++++|.|+..+....+.- ..+. . +.++.+-...|.+++|.|++.||.-.|-...
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~----~gl~--~----~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP----FGLS--K----PRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc----CCCC--h----hhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 34566899999999999999998888752 2332 1 2233366668999999999999887766543
No 212
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.20 E-value=7.6 Score=46.30 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=48.9
Q ss_pred HHHHHHHhHcCCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHh
Q 003589 171 NVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (808)
Q Consensus 171 ~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (808)
.-.++|+.+|+...|+|+=.+=..+|+...-+...+..|+. |.|.|+ ||.++-+||.-.|..+
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~-LsDvd~--DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWT-LSDVDG--DGKLSADEFILAMHLI 258 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhhee-eeccCC--CCcccHHHHHHHHHHH
Confidence 46889999999999999988877777543214455667777 788888 9999999998877643
No 213
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=57.43 E-value=66 Score=39.16 Aligned_cols=165 Identities=13% Similarity=0.214 Sum_probs=91.3
Q ss_pred cCchhhHHHHhhhhhhhccC-C---CcCH-HHHHHHHHhHcCCCCceEehhhccccccC---CCCCHHHHHHHHHHHHcc
Q 003589 145 RNKSAAAYALKGLKFISKTD-G---GAGW-ANVEKRFDEITASTNGVLPRARFGECIGM---NKDSKDFAVELFDALTRR 216 (808)
Q Consensus 145 r~~~~a~~al~~l~~i~~~~-~---~~~~-~~l~~~F~~lD~d~dG~Is~~ef~~~lg~---~~~~~~~~~~lF~~l~d~ 216 (808)
..+..+-..+++++++.... . ...+ .+++++|-.+|.+....|+..+++..+.. +-.+..+..+-|. .|.
T Consensus 114 tse~e~n~w~~glkw~~~dtl~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~t--ed~ 191 (1267)
T KOG1264|consen 114 TSEEEANNWLSGLKWLHQDTLNAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFT--EDG 191 (1267)
T ss_pred hhhHHHHHHhhcchhhhhhhccCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHh--Hhh
Confidence 34455666778888876532 1 1222 67889998888766778999999988732 1113344444444 233
Q ss_pred cCCCCCcccHHHHHHHHHHhccCChHHHHHHh---c--hhhcCCCCCceeHHHHHHHHHhhhc---cCCccchHHHHHHH
Q 003589 217 RNIQGDTITKDQLREFWDQISDQSFDSRLQTF---F--DMVDKDADGRITEDEVREIISLSAS---ANKLSNIQKQAEEY 288 (808)
Q Consensus 217 d~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~---F--~~fDkD~dG~It~eEf~~~l~~~~~---~~~l~~~~~~~~e~ 288 (808)
. +.+.++|++|......+.-......+... | ..=|...--.++..||++++.-.-. +.....+++-+...
T Consensus 192 ~--~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F 269 (1267)
T KOG1264|consen 192 A--RKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKF 269 (1267)
T ss_pred h--ccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Confidence 3 37899999999998876533221111111 1 1112222247999999999852111 11111111111111
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 289 AALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 289 ~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
++..|.+ -+.-++.+.||+..|=..
T Consensus 270 ~~D~~re---~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 270 IDDTMRE---TAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred Hhhhhhh---ccCcceeHHHHHHHHhhc
Confidence 2222222 234489999999988644
No 214
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=53.65 E-value=12 Score=43.48 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=49.6
Q ss_pred HHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 244 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 244 ~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
..+.-|..+|+|+.|+++.++..++|+... .+.+ + +..+.+.+++|.+..|+++.+||.+++...
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d--~----~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD--E----DRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC--H----HHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 345779999999999999999999987432 1121 2 334447777898889999999999988754
No 215
>PLN02631 ferric-chelate reductase
Probab=53.18 E-value=25 Score=42.84 Aligned_cols=60 Identities=20% Similarity=0.107 Sum_probs=44.3
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCccccccc--chHHHHHHHHHHH-HHHHHHHHhhh
Q 003589 496 HFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFVI-VYTLLIVHGQY 564 (808)
Q Consensus 496 ~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~--ye~F~~~H~l~~i-~~vll~~H~~~ 564 (808)
..+..++-.+|++++.+|.++++++. |. ++|-.+++ ||.|...|+.++- ++++.++|+..
T Consensus 147 ~~l~~ig~RtGila~~~lpll~L~a~---Rn------n~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~i~ 209 (699)
T PLN02631 147 AKFRAFGLRIGYVGHICWAFLFFPVT---RA------STILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVV 209 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cc------CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667899999999988888764 33 24555555 9999999998775 45567899774
No 216
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=49.87 E-value=1.9e+02 Score=27.29 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=60.4
Q ss_pred HHHHHHHHcccCCCCCcccHHHHHHHHHHh--c-----cCChHHHHHHhchhhcCCC--CCceeHHHHHHHHHhhh----
Q 003589 207 VELFDALTRRRNIQGDTITKDQLREFWDQI--S-----DQSFDSRLQTFFDMVDKDA--DGRITEDEVREIISLSA---- 273 (808)
Q Consensus 207 ~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l--~-----~~~~de~L~~~F~~fDkD~--dG~It~eEf~~~l~~~~---- 273 (808)
.++|+.+.+ =+.|-|.-|..+++-- . +.-+-..+..+|+....++ |..|+..|+..++....
T Consensus 3 ~~l~~~l~~-----~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~ 77 (127)
T PF09068_consen 3 TELMQELQD-----FNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLN 77 (127)
T ss_dssp HHHHHHGGG-----GTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHH
Confidence 345665532 3568888888887631 1 1222345677777776554 46799999999997332
Q ss_pred -ccCCccchH-----HHHHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 003589 274 -SANKLSNIQ-----KQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 314 (808)
Q Consensus 274 -~~~~l~~~~-----~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~ 314 (808)
.......+. .-++-.+.-++.-+|++.+|.|+.-+|+..+.
T Consensus 78 ~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 78 KRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 112222212 33444667888899999999999999987764
No 217
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=49.82 E-value=21 Score=45.01 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=42.4
Q ss_pred hchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 248 FFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 248 ~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
-|+.||.||.|.|+..||.++|..... .. + ..++.++.-+..|.+...+|+||..-..+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~---yt--q----se~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH---YT--Q----SEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc---ch--h----HHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 377899999999999999999973211 11 2 22344666667777888999999876654
No 218
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=49.73 E-value=1.1e+02 Score=29.99 Aligned_cols=49 Identities=10% Similarity=0.234 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHhc---cCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 222 DTITKDQLREFWDQIS---DQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 222 G~I~~~EF~~~~~~l~---~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
..++-..|..++.... .......+..+|..+-..+...|++++|.++|.
T Consensus 17 ~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp SEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 4555555555555432 112344566666665444555566666666665
No 219
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=49.46 E-value=19 Score=42.61 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHhccC-ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCC
Q 003589 224 ITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 302 (808)
Q Consensus 224 I~~~EF~~~~~~l~~~-~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG 302 (808)
|+|+.|......+..- ....-++.+|+..|++++|.||+.+|-.-+...... .+-+.+..+++-.|++.|
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~--------~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG--------DALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh--------hHHHHHHHHHhhccCCcc-
Confidence 4444444444433221 234567899999999999999999988877633221 233445668999999988
Q ss_pred ceeHHHH
Q 003589 303 CIMIDNL 309 (808)
Q Consensus 303 ~Is~eEF 309 (808)
..+-+|-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 7777765
No 220
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=47.83 E-value=64 Score=31.59 Aligned_cols=66 Identities=9% Similarity=0.132 Sum_probs=43.1
Q ss_pred HHhchhh---cCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhC
Q 003589 246 QTFFDMV---DKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 316 (808)
Q Consensus 246 ~~~F~~f---DkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~ 316 (808)
+.+|..| -+.+...++-.-|..+|+.+.--++- ....-++.||..+-..+...|+|++|+..|...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k-----~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKK-----LTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SS-----S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCC-----CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3444444 35666789999999999865322111 123346668988777777789999999999754
No 221
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.30 E-value=12 Score=42.45 Aligned_cols=66 Identities=6% Similarity=0.139 Sum_probs=45.2
Q ss_pred cCHHHHHHHHHhHcCCCCceEehhhcccccc-CCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHh
Q 003589 167 AGWANVEKRFDEITASTNGVLPRARFGECIG-MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQI 236 (808)
Q Consensus 167 ~~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg-~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l 236 (808)
++-+---+.|+.+-.|.+|.|+=+--+..+. .+. .-+++.-|++ |.|.|. ||.++++||.+++..+
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl-pi~ELshIWe-LsD~d~--DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL-PIEELSHIWE-LSDVDR--DGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhccC-chHHHHHHHh-hcccCc--cccccHHHHHhhHhhe
Confidence 4445566778888777888887555555442 233 4456777787 677777 8888888888887755
No 222
>PLN02292 ferric-chelate reductase
Probab=46.55 E-value=41 Score=41.15 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=43.1
Q ss_pred hhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCccccccc--chHHHHHHHHHH-HHHHHHHHHhhhh
Q 003589 498 VKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFV-IVYTLLIVHGQYL 565 (808)
Q Consensus 498 ~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~--ye~F~~~H~l~~-i~~vll~~H~~~~ 565 (808)
+..++..+|+++..+|.++++++. |.+ +|-.+++ ||.|-..|+.++ +++++.++|+...
T Consensus 166 l~~vg~R~Gila~~~lpll~l~~~---Rnn------~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~y 227 (702)
T PLN02292 166 LDSIAVRLGLVGNICLAFLFYPVA---RGS------SLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLCY 227 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCC------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567899999999888887663 332 4555555 999999999876 4556679998743
No 223
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.94 E-value=1.6e+02 Score=33.40 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=28.9
Q ss_pred CCCCcccHHHHHHHHHH-hccCChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhc
Q 003589 219 IQGDTITKDQLREFWDQ-ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSAS 274 (808)
Q Consensus 219 ~~~G~I~~~EF~~~~~~-l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~ 274 (808)
+.+|.|+.+|=-.++.. +...+...+=...|.- .|-.||.+|+-+.+..+..
T Consensus 80 D~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~Sev 132 (575)
T KOG4403|consen 80 DHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKESEV 132 (575)
T ss_pred ccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhhhh
Confidence 33677777665555543 2222222233335543 3558999999999875433
No 224
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.28 E-value=34 Score=39.02 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHh
Q 003589 245 LQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 315 (808)
Q Consensus 245 L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~ 315 (808)
.-.-|+.+-.|-+|+|+-.--+++++. .++.. +.+..|.+-.|.|+||-+++.||++.+.-
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtK----Sklpi------~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTK----SKLPI------EELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhh----ccCch------HHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 445588889999999998888888762 23331 12445777899999999999999998863
No 225
>PLN02952 phosphoinositide phospholipase C
Probab=37.72 E-value=94 Score=37.27 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=54.4
Q ss_pred CCceEehhhccccc---cCCC-CCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHHHhccCC--hHHHHHHhchhh----
Q 003589 183 TNGVLPRARFGECI---GMNK-DSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS--FDSRLQTFFDMV---- 252 (808)
Q Consensus 183 ~dG~Is~~ef~~~l---g~~~-~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~~l~~~~--~de~L~~~F~~f---- 252 (808)
+.|.+++++|..+. ..+. ....++..+|..+.. + ++.++.++|..++....... ..+.++.+|+.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~--~--~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV--G--GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC--C--CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 46899999986543 2211 034678889986542 2 46899999999998876532 344555555433
Q ss_pred ---cCCCCCceeHHHHHHHHH
Q 003589 253 ---DKDADGRITEDEVREIIS 270 (808)
Q Consensus 253 ---DkD~dG~It~eEf~~~l~ 270 (808)
.+.+.+.++.+.|...|.
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccccCcCHHHHHHHHc
Confidence 122345688999888885
No 226
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=37.29 E-value=1.9e+02 Score=28.36 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=22.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhc
Q 003589 440 DDNLNFHKVIAVGISIGVGIHAISHLA 466 (808)
Q Consensus 440 d~~~~fHk~ig~~~~~~~~lH~i~~l~ 466 (808)
.....+|+++|.+.++..+++.+..+.
T Consensus 44 ~~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 44 QLLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345679999999999999999987764
No 227
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=37.06 E-value=1.9e+02 Score=27.33 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=59.1
Q ss_pred ccccCchhhHH-HHhhhhhhhccC--CCcCHHHHHHHHHhHcCCC--CceEehhhccccccCCCCCHHHHHHHHHHHHcc
Q 003589 142 RFDRNKSAAAY-ALKGLKFISKTD--GGAGWANVEKRFDEITAST--NGVLPRARFGECIGMNKDSKDFAVELFDALTRR 216 (808)
Q Consensus 142 ~~dr~~~~a~~-al~~l~~i~~~~--~~~~~~~l~~~F~~lD~d~--dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~ 216 (808)
-||.-+=+|-+ |.| +|++++.. ...+...+.+.|+...-+. |..++..|+.. .+..+|+.+..+
T Consensus 11 ~~n~IrfsaYRtA~K-LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~----------~L~~iy~~l~~~ 79 (127)
T PF09068_consen 11 DFNNIRFSAYRTAMK-LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLET----------LLSSIYEFLNKR 79 (127)
T ss_dssp GGTT-SSHHHHHHHH-HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHH----------HHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHHH-HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHH----------HHHHHHHHHHHH
Confidence 45555656644 555 58888764 3456678888998876422 34555555443 345677644433
Q ss_pred cCCCCCcccH-----HHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 217 RNIQGDTITK-----DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 217 d~~~~G~I~~-----~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.+ +..+. +.-.+. -+..+..+||.+++|.|+.-+|+.++.
T Consensus 80 ~p---~~~~i~~~~v~~a~~L-----------~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 80 LP---TLHQIPSRPVDLAVDL-----------LLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp ST---TS--HH-----HHHHH-----------HHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred CC---CCCCCCchhHHHHHHH-----------HHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 32 22222 233222 377889999999999999999998875
No 228
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=35.86 E-value=1.1e+02 Score=37.56 Aligned_cols=58 Identities=21% Similarity=0.156 Sum_probs=40.8
Q ss_pred hhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCccccccc--chHHHHHHHHHHHH-HHHHHHHhhh
Q 003589 498 VKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTG--FNAFWYSHHLFVIV-YTLLIVHGQY 564 (808)
Q Consensus 498 ~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~--ye~F~~~H~l~~i~-~vll~~H~~~ 564 (808)
+..+...+|+++.++|.++++++.+ .+ ++-++++ ||.+-..|..++-+ +++.++|+..
T Consensus 152 ~~~va~R~G~la~~~Lpll~llv~R---nn------~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 152 YLRVATRFGLLAEACLALLLLPVLR---GL------ALFRLLGIQFEASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---cc------HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567899999998888876653 21 3334444 99999999988754 5556899873
No 229
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=35.80 E-value=53 Score=32.71 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=21.5
Q ss_pred HHHHHHHHhHcCCCCceEehhhccccc
Q 003589 170 ANVEKRFDEITASTNGVLPRARFGECI 196 (808)
Q Consensus 170 ~~l~~~F~~lD~d~dG~Is~~ef~~~l 196 (808)
+..+++|.+++..+.+.|+..|+...+
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~ 122 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRML 122 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 568999999987777788888877665
No 230
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=35.19 E-value=1.4e+02 Score=33.52 Aligned_cols=63 Identities=21% Similarity=0.292 Sum_probs=42.7
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhcchhhhhccCCCCCcccccccchHHHHHHHHHHHH-HHHHHHHhhh
Q 003589 494 YWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIV-YTLLIVHGQY 564 (808)
Q Consensus 494 ~~~~~~~~~~~tGiv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~-~vll~~H~~~ 564 (808)
-|.+..+..-.+|++++.+|.+++++|++..+-- +++ -+-+.-|..|...+++ ++++++|...
T Consensus 33 ~~s~~~~~~qf~g~iaL~~msl~~~LA~R~~~iE-----~~~---~GlD~~Y~~HK~~sIlailL~l~H~~~ 96 (438)
T COG4097 33 LLSWRLEFSQFLGFIALALMSLIFLLATRLPLIE-----AWF---NGLDKIYRFHKYTSILAILLLLAHNFI 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHh-----hhh---hhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677899999999999999887654421 111 1235567889987765 4556888664
No 231
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=34.75 E-value=35 Score=43.26 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=39.1
Q ss_pred HHHhHcCCCCceEehhhcccccc-CCCCCHHHHHHHHHHHHcccCCCCCcccHHHHHHHHH
Q 003589 175 RFDEITASTNGVLPRARFGECIG-MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWD 234 (808)
Q Consensus 175 ~F~~lD~d~dG~Is~~ef~~~lg-~~~~~~~~~~~lF~~l~d~d~~~~G~I~~~EF~~~~~ 234 (808)
.|+.+|.|+.|.|+..+|.++|. .+.....+.+-+... +..|. ++..+|+||++-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllsc-ae~de--nd~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSC-AEADE--NDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHh-hccCc--cccccHHHHHHHhc
Confidence 35677889999999999999993 331133344444442 45555 88999999987543
No 232
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=34.74 E-value=69 Score=28.79 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=40.5
Q ss_pred chhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHH---HHHHhcCCCCCCceeHHHHHHHHHhCCccccC
Q 003589 249 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAA---LIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 322 (808)
Q Consensus 249 F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~---~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~~~ 322 (808)
|...|.. +...+.+|+.+++..... ..++.++ ..+++++.+....++-+|..++|.++|..+.+
T Consensus 26 ~~~idi~-~~~~~~~~l~~~~~~~~~---------~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikR 92 (105)
T cd02977 26 YEFIDYL-KEPPTKEELKELLAKLGL---------GVEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKR 92 (105)
T ss_pred cEEEeec-cCCCCHHHHHHHHHhcCC---------CHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeC
Confidence 4445544 345678888888763220 0112221 35566666545678999999999999998864
No 233
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=34.55 E-value=1.6e+02 Score=30.19 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHH-HHHHhh
Q 003589 541 FNAFWYSHHLFVIVYTL-LIVHGQ 563 (808)
Q Consensus 541 ye~F~~~H~l~~i~~vl-l~~H~~ 563 (808)
.+.....|++.+.++++ +++|..
T Consensus 146 ~~~~~~~H~~~a~~~i~~iivHiy 169 (211)
T PRK10639 146 IRFALMLHSFAAVALIVVIMVHIY 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999998876654 577764
No 234
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=34.51 E-value=80 Score=28.83 Aligned_cols=51 Identities=25% Similarity=0.485 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhcchhhhhccCCCCCccc--ccccchHHHHHHHHHHHH-HHHHHHHhhhh
Q 003589 506 GIVMVVLMAIAFTLATPWFRRNKLNLPKPLK--KLTGFNAFWYSHHLFVIV-YTLLIVHGQYL 565 (808)
Q Consensus 506 Giv~~v~~~i~~~~s~~~~Rr~~~~~~~~~~--~~~~ye~F~~~H~l~~i~-~vll~~H~~~~ 565 (808)
|+++++.+.++++++. |.+ |+. ....++.+...|..++.+ +++..+|+...
T Consensus 2 G~~a~~~l~~~~~l~~---R~~------~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~ 55 (125)
T PF01794_consen 2 GILAFALLPLVFLLGL---RNS------PLARLTGISFDRLLRFHRWLGRLAFFLALLHGVLY 55 (125)
T ss_pred HHHHHHHHHHHHHHHH---hhh------HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666552 222 111 123588899999988765 45578998743
No 235
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=34.38 E-value=3.7e+02 Score=24.70 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccceeeecCccccCCCCcccCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhcchh
Q 003589 444 NFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPW 523 (808)
Q Consensus 444 ~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s~~~ 523 (808)
.=|.|.+.++.+. .+|++.... + .+. +.+.|++.+++.+++|+.++-+
T Consensus 54 ~t~~W~sfv~L~Y-F~~gv~~a~--------~--------------~~~---------~~~~a~~e~~ls~~lF~~~~~y 101 (109)
T PF09842_consen 54 YTYAWASFVILLY-FIHGVTRAW--------S--------------DPG---------ERWLAWLELLLSVLLFVGAMLY 101 (109)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHh--------c--------------Ccc---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 5699999876665 589887652 1 010 1235777777777778888888
Q ss_pred hhhc
Q 003589 524 FRRN 527 (808)
Q Consensus 524 ~Rr~ 527 (808)
.|-+
T Consensus 102 ~R~r 105 (109)
T PF09842_consen 102 ARWR 105 (109)
T ss_pred HHHH
Confidence 8865
No 236
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=33.08 E-value=3.5e+02 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 003589 443 LNFHKVIAVGISIGVGIHAISH 464 (808)
Q Consensus 443 ~~fHk~ig~~~~~~~~lH~i~~ 464 (808)
...|.++|.++++..+++....
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999888887655
No 237
>MTH00053 CYTB cytochrome b; Provisional
Probab=32.40 E-value=6e+02 Score=28.83 Aligned_cols=36 Identities=22% Similarity=0.605 Sum_probs=15.7
Q ss_pred CCcchhh----hhhchhh-HHHHHHHHHHHHHHHhcchhhhh
Q 003589 490 QPKNYWH----FVKSVEG-VTGIVMVVLMAIAFTLATPWFRR 526 (808)
Q Consensus 490 ~~~~~~~----~~~~~~~-~tGiv~~v~~~i~~~~s~~~~Rr 526 (808)
+|+.|.- .++..++ +.|++++++ .++....+|++-+
T Consensus 270 ~PEWYFL~~YaiLrsiPnKlgGvialv~-sIlvLflLP~i~~ 310 (381)
T MTH00053 270 KPEWYFLFAYAILRSIPNKLGGVVALVF-SILVLFFLPYLHK 310 (381)
T ss_pred CchHHHHHHHHHHHhhcchhHHHHHHHH-HHHHHHHHHHHHH
Confidence 4555543 2344443 345555443 3332233666543
No 238
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=31.90 E-value=47 Score=27.17 Aligned_cols=25 Identities=20% Similarity=-0.071 Sum_probs=21.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhh
Q 003589 440 DDNLNFHKVIAVGISIGVGIHAISH 464 (808)
Q Consensus 440 d~~~~fHk~ig~~~~~~~~lH~i~~ 464 (808)
+.....|.+.|.+.++++++|.+.|
T Consensus 39 ~~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 39 HFWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455799999999999999999866
No 239
>MTH00074 CYTB cytochrome b; Provisional
Probab=31.88 E-value=8e+02 Score=27.80 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003589 547 SHHLFVIVYTLLIVHGQ 563 (808)
Q Consensus 547 ~H~l~~i~~vll~~H~~ 563 (808)
...++++.++++.+=|.
T Consensus 325 ~fw~fv~~filLtwlG~ 341 (380)
T MTH00074 325 LFWLLVANTLILTWIGG 341 (380)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34445544444433343
No 240
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=31.41 E-value=17 Score=30.64 Aligned_cols=61 Identities=5% Similarity=0.124 Sum_probs=37.9
Q ss_pred CHHHHHHHHHhHcCCCCceEehhhccccccCCCCCHHHHHHHHHHHHcccCC-CCCcccHHHHHH
Q 003589 168 GWANVEKRFDEITASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRRNI-QGDTITKDQLRE 231 (808)
Q Consensus 168 ~~~~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d~~-~~G~I~~~EF~~ 231 (808)
.-+++.+.|+.++ ++.+.|+.+||...|.-.. .+++.+-+....+.+++ ..|..+|..|..
T Consensus 4 s~eqv~~aFr~lA-~~KpyVT~~dLr~~l~pe~--aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRALA-GGKPYVTEEDLRRSLTPEQ--AEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHHC-TSSSCEEHHHHHHHS-CCC--HHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHHH-cCCCcccHHHHHHHcCcHH--HHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3467999999995 4789999999999886554 24444333322222211 137788888864
No 241
>MTH00016 CYTB cytochrome b; Validated
Probab=30.98 E-value=5.5e+02 Score=29.08 Aligned_cols=36 Identities=17% Similarity=0.435 Sum_probs=16.3
Q ss_pred CCcchhh----hhhchhh-HHHHHHHHHHHHHHHhcchhhhh
Q 003589 490 QPKNYWH----FVKSVEG-VTGIVMVVLMAIAFTLATPWFRR 526 (808)
Q Consensus 490 ~~~~~~~----~~~~~~~-~tGiv~~v~~~i~~~~s~~~~Rr 526 (808)
+|+.|.- .++.+++ +.|++++++.. +.+..+|++-+
T Consensus 270 ~PEWYFL~~YaiLRsiPnKlgGvial~~si-liL~lLP~l~~ 310 (378)
T MTH00016 270 KPEWYFLWAYAILRSIPNKLGGVVAMFASI-LILFFLPFIFK 310 (378)
T ss_pred CCchhhhHHHhhhhcccchhHHHHHHHHHH-HHHHHHHHHhh
Confidence 4554433 2444444 34565554333 22333666544
No 242
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=30.75 E-value=23 Score=41.30 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=33.6
Q ss_pred CCcccHHHHHHHHHHhccCChHHHHHHhchhhcCCCCCceeHHHHHHHHH
Q 003589 221 GDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 270 (808)
Q Consensus 221 ~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fDkD~dG~It~eEf~~~l~ 270 (808)
.|.++-++.+..+.....+-+++.+...-+..|.+-+|++..+||.+++.
T Consensus 607 ~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 607 KAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 56666666666666666555666666666666666677777777666665
No 243
>PF14145 YrhK: YrhK-like protein
Probab=30.47 E-value=78 Score=25.75 Aligned_cols=39 Identities=28% Similarity=0.658 Sum_probs=22.2
Q ss_pred HHHHhhhhhhccccccceeeehhhHHHHHHHHHHHHHHhh
Q 003589 558 LIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALR 597 (808)
Q Consensus 558 l~~H~~~~~~~~~w~~~~~w~y~~~~~~l~~~drl~R~~r 597 (808)
+++-|...++...++...+|.|++.+ +.+++.-.+|..|
T Consensus 18 ~FliGSilfl~~~~~~~g~wlFiiGS-~~f~i~~~i~~ir 56 (59)
T PF14145_consen 18 LFLIGSILFLPESLYTAGTWLFIIGS-ILFLIRPIIRLIR 56 (59)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33445555555556555678776543 4555555555554
No 244
>MTH00022 CYTB cytochrome b; Validated
Probab=28.87 E-value=7.9e+02 Score=27.83 Aligned_cols=37 Identities=22% Similarity=0.515 Sum_probs=17.1
Q ss_pred CCcchhh----hhhchhh-HHHHHHHHHHHHHHHhcchhhhhc
Q 003589 490 QPKNYWH----FVKSVEG-VTGIVMVVLMAIAFTLATPWFRRN 527 (808)
Q Consensus 490 ~~~~~~~----~~~~~~~-~tGiv~~v~~~i~~~~s~~~~Rr~ 527 (808)
+|+.|.- .++.+++ +.|++++++ .++....+|++-+.
T Consensus 268 ~PEWYFL~~YaiLRsiPnKlgGvial~~-siliLflLP~i~~~ 309 (379)
T MTH00022 268 QPEWYFLFAYAILRSIPNKLGGVVAMFF-SILILFFLPLLHTS 309 (379)
T ss_pred CCccccHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 5555543 3344443 345655543 33223346766543
No 245
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.23 E-value=48 Score=36.70 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=46.9
Q ss_pred ChHHHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHH
Q 003589 240 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 311 (808)
Q Consensus 240 ~~de~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ 311 (808)
.+.+.+++.|+.+|..++|+|+.+-++++|+..- -..+ + .+++..+=+.+|+.+-|-|=.++|..
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N--~~vs---e--~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN--RLVS---E--PAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc--cccc---C--HHHHHHhcCccChhhcceEEeccccc
Confidence 4468899999999999999999999999997331 0111 1 23444455568888888887777643
No 246
>MTH00156 CYTB cytochrome b; Provisional
Probab=27.70 E-value=9.1e+02 Score=27.11 Aligned_cols=37 Identities=24% Similarity=0.578 Sum_probs=17.1
Q ss_pred CCcchhh----hhhchhhH-HHHHHHHHHHHHHHhcchhhhhc
Q 003589 490 QPKNYWH----FVKSVEGV-TGIVMVVLMAIAFTLATPWFRRN 527 (808)
Q Consensus 490 ~~~~~~~----~~~~~~~~-tGiv~~v~~~i~~~~s~~~~Rr~ 527 (808)
.|+.|.. .++..++- .|+++++ ++++....+|++-|.
T Consensus 259 ~PEWYFL~~YaiLrsiP~k~gGv~~~~-~~i~~l~~lP~l~~~ 300 (356)
T MTH00156 259 QPEWYFLFAYAILRSIPNKLGGVIALV-MSILILMILPFTNKS 300 (356)
T ss_pred CcchHHHHHHHHHhcCCcchHHHHHHH-HHHHHHHHHHHHhhc
Confidence 4555433 33444433 3444433 334444456766544
No 247
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=27.48 E-value=33 Score=34.67 Aligned_cols=30 Identities=10% Similarity=0.380 Sum_probs=24.7
Q ss_pred HHHHHHHhHcCCCCceEehhhccccccCCC
Q 003589 171 NVEKRFDEITASTNGVLPRARFGECIGMNK 200 (808)
Q Consensus 171 ~l~~~F~~lD~d~dG~Is~~ef~~~lg~~~ 200 (808)
-...-|+..|.|+||.|+++|++.|+|.+.
T Consensus 223 c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 223 CTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred hchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 355667788889999999999999999874
No 248
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=26.58 E-value=1.6e+02 Score=26.91 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=43.3
Q ss_pred hhhcCCCCCceeHHHHHHHHHhhhc----cCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCcc
Q 003589 250 DMVDKDADGRITEDEVREIISLSAS----ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 319 (808)
Q Consensus 250 ~~fDkD~dG~It~eEf~~~l~~~~~----~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~ 319 (808)
+.||.+.+-+||.+++++++..... .++-. ++....++-+|+-|-...+...++.+=+..+++-..+.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg--eDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~ 81 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG--DDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGS 81 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC--chhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChh
Confidence 5789999999999999999973211 11111 22334444555555555667777777777777755443
No 249
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=26.30 E-value=2.1e+02 Score=27.72 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCccc
Q 003589 282 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 320 (808)
Q Consensus 282 ~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~ 320 (808)
++|+.+++..|++.+..+ .++=|+|+.++.+.|.+.
T Consensus 130 k~Qik~L~~~Ii~~akae---~~dtE~Ye~vwkKmPaY~ 165 (175)
T PF04876_consen 130 KDQIKTLCEQIIEMAKAE---SSDTEHYEKVWKKMPAYF 165 (175)
T ss_pred HHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHhhHHH
Confidence 666777777777666533 366789999999999874
No 250
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=26.26 E-value=65 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=23.5
Q ss_pred HHHhcCCCCCCceeHHHHHHHHHhCCccccC
Q 003589 292 IMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 322 (808)
Q Consensus 292 i~~e~D~d~dG~Is~eEF~~ll~~~p~~~~~ 322 (808)
.+++++.+....++-+|..++|.++|..+.+
T Consensus 60 ~yk~l~l~~~~~~s~~e~~~~l~~~p~LikR 90 (105)
T cd03035 60 TWRKLDDAQKAALDAAKAIALMLEHPSLIKR 90 (105)
T ss_pred HHHhCChhhhccCCHHHHHHHHHhCcCeeec
Confidence 5566665533457889999999999998864
No 251
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=25.96 E-value=53 Score=21.02 Aligned_cols=16 Identities=19% Similarity=0.489 Sum_probs=11.8
Q ss_pred cCCCCCceeHHHHHHH
Q 003589 253 DKDADGRITEDEVREI 268 (808)
Q Consensus 253 DkD~dG~It~eEf~~~ 268 (808)
|.|+||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 7899999988876543
No 252
>MTH00033 CYTB cytochrome b; Provisional
Probab=25.78 E-value=5.6e+02 Score=29.07 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=17.6
Q ss_pred CCcchhhh----hhchhh-HHHHHHHHHHHHHHHhcchhhhhc
Q 003589 490 QPKNYWHF----VKSVEG-VTGIVMVVLMAIAFTLATPWFRRN 527 (808)
Q Consensus 490 ~~~~~~~~----~~~~~~-~tGiv~~v~~~i~~~~s~~~~Rr~ 527 (808)
+|+.|..+ ++..++ ..|+++++ ++++....+|++-|+
T Consensus 268 ~PEWYFL~~YaiLRsiP~KlgGvlal~-~silvL~~lP~~~~~ 309 (383)
T MTH00033 268 QPEWYFLFAYAILRSIPNKLGGVLALF-ASILVLLLMPILDRS 309 (383)
T ss_pred CCchHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHHHhccc
Confidence 56555432 333443 24555544 444444556766443
No 253
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=25.12 E-value=76 Score=23.13 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 003589 442 NLNFHKVIAVGISIGVGI 459 (808)
Q Consensus 442 ~~~fHk~ig~~~~~~~~l 459 (808)
....|+|+|.++.++..+
T Consensus 4 ~~~~H~W~Gl~~g~~l~~ 21 (37)
T PF13706_consen 4 LRKLHRWLGLILGLLLFV 21 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 347899999987666543
No 254
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=24.88 E-value=1.5e+02 Score=26.76 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHhchhhcCCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCc
Q 003589 243 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 318 (808)
Q Consensus 243 e~L~~~F~~fDkD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~ 318 (808)
..++.-|+.+-+ ||++..++|-+.+- .+.+ ++-+.|+.+.+-+.-... ...|+.+|+.....+..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG-----M~dS--keFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG-----MKDS--KEFAGELFDALARRRGIK-GDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-------S---HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC-----Cccc--HHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhhc
Confidence 346677777776 79999999998885 2222 344444443333333333 578999999988877544
No 255
>MTH00131 CYTB cytochrome b; Provisional
Probab=24.49 E-value=1.1e+03 Score=26.81 Aligned_cols=36 Identities=17% Similarity=0.532 Sum_probs=15.5
Q ss_pred CCcchhh----hhhchhh-HHHHHHHHHHHHHHHhcchhhhh
Q 003589 490 QPKNYWH----FVKSVEG-VTGIVMVVLMAIAFTLATPWFRR 526 (808)
Q Consensus 490 ~~~~~~~----~~~~~~~-~tGiv~~v~~~i~~~~s~~~~Rr 526 (808)
+|+.|.. .++..++ +.|+++++ ++++.....|++.+
T Consensus 269 ~PEWYFL~~yaiLR~iP~kl~Gv~~~~-~~i~~L~lLPfi~~ 309 (380)
T MTH00131 269 KPEWYFLFAYAILRSIPNKLGGVLALL-FSILVLMVVPILHT 309 (380)
T ss_pred CCceecHHHHHHHhhccccchHHHHHH-HHHHHHHHHHHHcc
Confidence 4555543 2333443 34554443 33333334555544
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=24.26 E-value=3.9e+02 Score=33.32 Aligned_cols=129 Identities=13% Similarity=0.263 Sum_probs=80.3
Q ss_pred CCCCceEehhhccccccCCCCCHHHHHHHHHHHHccc-------CCCCCcccHHHHHHHHHHhccCChHHHHHHhchhhc
Q 003589 181 ASTNGVLPRARFGECIGMNKDSKDFAVELFDALTRRR-------NIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVD 253 (808)
Q Consensus 181 ~d~dG~Is~~ef~~~lg~~~~~~~~~~~lF~~l~d~d-------~~~~G~I~~~EF~~~~~~l~~~~~de~L~~~F~~fD 253 (808)
.|.+|+|....+.+.+.... .+ .++..++.... ...-...+++.|..++.+++ ...+++.+|..+-
T Consensus 159 vn~~grip~knI~k~F~~~k-~~---KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc---pR~eie~iF~ki~ 231 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSADK-KE---KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC---PRPEIEEIFRKIS 231 (1189)
T ss_pred ccccccccHHHHHHHhhcCC-ch---hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC---CchhHHHHHHHhc
Confidence 45678888877777764432 11 44555543321 11123345666666666664 4557999999999
Q ss_pred CCCCCceeHHHHHHHHHhhhccCCccchH--HHHHHHHHHHHHhcCCCC----CCceeHHHHHHHHHhC
Q 003589 254 KDADGRITEDEVREIISLSASANKLSNIQ--KQAEEYAALIMEELDPDH----LGCIMIDNLEMLLLQA 316 (808)
Q Consensus 254 kD~dG~It~eEf~~~l~~~~~~~~l~~~~--~~~~e~~~~i~~e~D~d~----dG~Is~eEF~~ll~~~ 316 (808)
.|+.-++|.++|..++...-....+..+- .--.+.+..+++...+|+ +|.|+-+-|...+...
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 88889999999999997433222222110 001234556777777665 4789999999888763
No 257
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=24.18 E-value=77 Score=28.82 Aligned_cols=66 Identities=21% Similarity=0.353 Sum_probs=37.2
Q ss_pred chhhcCCCCCceeHHHHHHHHHhhhc-cCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHHHhCCccccC
Q 003589 249 FDMVDKDADGRITEDEVREIISLSAS-ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 322 (808)
Q Consensus 249 F~~fDkD~dG~It~eEf~~~l~~~~~-~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll~~~p~~~~~ 322 (808)
|+..|.-.+ .+|.+|+.+++..... ...+-..+ ...+++++......++-+|..++|.++|..+.+
T Consensus 23 ~~~~d~~k~-p~s~~el~~~l~~~~~~~~~lin~~-------~~~~k~l~~~~~~~~s~~e~i~~l~~~p~LikR 89 (110)
T PF03960_consen 23 YEFIDYKKE-PLSREELRELLSKLGNGPDDLINTR-------SKTYKELGKLKKDDLSDEELIELLLENPKLIKR 89 (110)
T ss_dssp EEEEETTTS----HHHHHHHHHHHTSSGGGGB-TT-------SHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-S
T ss_pred eEeehhhhC-CCCHHHHHHHHHHhcccHHHHhcCc-------cchHhhhhhhhhhhhhhHHHHHHHHhChhheeC
Confidence 444454433 4899999999975431 11111001 114555553334568899999999999998864
No 258
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=22.61 E-value=58 Score=35.11 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=14.0
Q ss_pred HHHhHcCCCCceEehhhccccc
Q 003589 175 RFDEITASTNGVLPRARFGECI 196 (808)
Q Consensus 175 ~F~~lD~d~dG~Is~~ef~~~l 196 (808)
-|...|.|+||.++-.|+...+
T Consensus 249 FF~LHD~NsDGfldeqELEaLF 270 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALF 270 (442)
T ss_pred heeeeccCCcccccHHHHHHHH
Confidence 3455566777777777666554
No 259
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=22.30 E-value=1.7e+02 Score=30.12 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=27.0
Q ss_pred cceeEEEEEEEEecC-----CEEEEEEEcCC-CcccCCCCEEEEEecc
Q 003589 599 SIKAVSIQKVAVYPG-----NVLALHMSKPD-RFRYKSGQYMFVNCAA 640 (808)
Q Consensus 599 ~~~~~~i~~v~~l~~-----~v~~l~l~~p~-~~~~~pGQyv~l~~p~ 640 (808)
..+.++|.+.+.+++ ++..|+|..+. ++.|+||+++-|..+.
T Consensus 7 ~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N 54 (219)
T PF00667_consen 7 NPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPN 54 (219)
T ss_dssp B-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SS
T ss_pred CCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccC
Confidence 345678888888865 48999998764 7999999999998764
No 260
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=21.91 E-value=1.2e+02 Score=21.43 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 003589 442 NLNFHKVIAVGISIGVGIHAISHL 465 (808)
Q Consensus 442 ~~~fHk~ig~~~~~~~~lH~i~~l 465 (808)
...+|+|+|..+.+..++=++.-+
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~lTG~ 28 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLALTGA 28 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447999999998887766555443
No 261
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=21.85 E-value=4.9e+02 Score=26.12 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccccceeeecCccccCCCCcccCCCCcchhhhhhchhhHHHHHHHHHHHHHHHhcc
Q 003589 442 NLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLAT 521 (808)
Q Consensus 442 ~~~fHk~ig~~~~~~~~lH~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tGiv~~v~~~i~~~~s~ 521 (808)
.-..|..+|.+++.+..+=.+.-.. +.|....+.| ..| -.++|+.++.+|++...++.
T Consensus 79 ~r~~H~~~g~~ll~~~~L~~lGG~~-----------~~~~~~~~lf-~sp----------H~~~Gl~~~~L~~~s~al~~ 136 (175)
T PF13301_consen 79 ARDRHYRLGFALLAFMGLGALGGQL-----------GTYRQNGKLF-WSP----------HLWAGLAVVGLMAFSAALVP 136 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcchH-----------HHHHcCCCCc-cCc----------hHHHHHHHHHHHHHHHHHHH
Confidence 3468999988877776554433221 0111111111 122 13579888888887655544
Q ss_pred hhhhhccCCCCCcccccccchHHHHHHHHHHHH-HHHHHHHhh
Q 003589 522 PWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIV-YTLLIVHGQ 563 (808)
Q Consensus 522 ~~~Rr~~~~~~~~~~~~~~ye~F~~~H~l~~i~-~vll~~H~~ 563 (808)
...+.+ -......|..+.++ ++++.+|+.
T Consensus 137 ~i~~g~-------------~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 137 QIQKGN-------------RPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HHccCC-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 444422 23678899987654 455677765
No 262
>MTH00100 CYTB cytochrome b; Provisional
Probab=21.18 E-value=1e+03 Score=26.89 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=16.6
Q ss_pred CCCcchhh----hhhchhh-HHHHHHHHHHHHHHHhcchhhhhc
Q 003589 489 DQPKNYWH----FVKSVEG-VTGIVMVVLMAIAFTLATPWFRRN 527 (808)
Q Consensus 489 ~~~~~~~~----~~~~~~~-~tGiv~~v~~~i~~~~s~~~~Rr~ 527 (808)
.+|+.|.. .++.+++ ..|++++++ .++.....|++.+.
T Consensus 268 i~PEWYFL~~YaiLr~ip~kl~Gv~~~~~-~~~~l~lLPfi~~~ 310 (379)
T MTH00100 268 IKPEWYFLFAYAILRSIPNKLGGVLALLL-SILILAIIPLLHTS 310 (379)
T ss_pred CCCchhhhHHHHHHHhhcccchHHHHHHH-HHHHHHHHHHHhcc
Confidence 35655543 2333443 345554432 33333445655543
No 263
>MTH00191 CYTB cytochrome b; Provisional
Probab=20.20 E-value=1.3e+03 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.452 Sum_probs=18.3
Q ss_pred CCCcchhh----hhhchhhH-HHHHHHHHHHHHHHhcchhhhhc
Q 003589 489 DQPKNYWH----FVKSVEGV-TGIVMVVLMAIAFTLATPWFRRN 527 (808)
Q Consensus 489 ~~~~~~~~----~~~~~~~~-tGiv~~v~~~i~~~~s~~~~Rr~ 527 (808)
-.|+.|.. +++..++- .|++++ +++++.+...|++-|.
T Consensus 265 i~PEWYFl~~yaiLr~iP~k~~Gll~~-~~~i~~l~~lPfLdrs 307 (365)
T MTH00191 265 IKPEWYFLFAYAILRSIPNKLGGVLAL-VMSILVLFLLPLLHTS 307 (365)
T ss_pred CCCccccHHHHHHHhcccchHHHHHHH-HHHHHHHHHHHHHhcc
Confidence 35555543 33444443 445444 3334444557776554
No 264
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=20.20 E-value=71 Score=32.38 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=38.1
Q ss_pred chhhc-CCCCCceeHHHHHHHHHhhhccCCccchHHHHHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 003589 249 FDMVD-KDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 313 (808)
Q Consensus 249 F~~fD-kD~dG~It~eEf~~~l~~~~~~~~l~~~~~~~~e~~~~i~~e~D~d~dG~Is~eEF~~ll 313 (808)
|-..| +--||++|-.|+.-+-. .-+ .++..+...|+..|.||||+|.++|+-..+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~a-----p~i-----pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRA-----PLI-----PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccC-----Ccc-----cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 44455 45689999998643321 111 234555668999999999999999997654
Done!