BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003591
         (808 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
           Resolution
 pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
           Domain At 3.0 Angstrom Resolution
          Length = 575

 Score = 38.1 bits (87), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 11/127 (8%)

Query: 634 EYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILE 693
           E A K   E +    Q+++ ++   A L EAQ+ IL++EE+  +L+   +   Q+ N L+
Sbjct: 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQ 390

Query: 694 ---QRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSP 750
              QRL+  +N+  A ++ L   E  ++A+ +     E+  +   +E   +  RRL +  
Sbjct: 391 AMMQRLEETKNMEAAERQKL---EDEIRAKQE-----EVSRIQQEVELKDSETRRLQEEV 442

Query: 751 EGSPGNQ 757
           E +   Q
Sbjct: 443 EDARRKQ 449


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,262,380
Number of Sequences: 62578
Number of extensions: 1016143
Number of successful extensions: 2668
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2662
Number of HSP's gapped (non-prelim): 7
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)