BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003591
(808 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99567|NUP88_HUMAN Nuclear pore complex protein Nup88 OS=Homo sapiens GN=NUP88 PE=1
SV=2
Length = 741
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 32/291 (10%)
Query: 454 PKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDE----------T 503
P +++ + + DP R + H+ G+ SV L ++ + G DE T
Sbjct: 384 PFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELST 443
Query: 504 NRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTWNLLLP 563
+ V +L T P+P+ GF + D G + I +TST EC++ W LL
Sbjct: 444 EQKCFVEHILCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI-----WPLLST 497
Query: 564 VQIDS-----EKKSVDLGAKKER---DTPDIISKELLSGPKVILLPQASPNL-----RSV 610
V S ++ V++ R +TPD K + S ++ A+P + +
Sbjct: 498 VHPASPPLLCTREDVEVAESPLRVLAETPDSFEKHIRS---ILQRSVANPAFLKASEKDI 554
Query: 611 AADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILK 670
A E L + +F+E Y+ E++ L Q LS + +
Sbjct: 555 APPPEECLQLLSRATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKS 614
Query: 671 VEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAEL 721
+ E RL ++ + A ++ + R++ L + + LS +E +K EL
Sbjct: 615 LREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKEL 665
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 106 FEVSRISINRNGSALLLIGSDGLCVMYL---YGRTCSSD--NKTIICRTVSVGSQIYFSS 160
FE+ ++ ++ + LIG GL V+ L +G+ + T+ C T V + +F+S
Sbjct: 109 FEIYQVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPVAER-FFTS 167
Query: 161 SNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
S + +W+P D H+ +L+SD+V R+++L
Sbjct: 168 STSLTLKHAAWYPSEILDPHVVLLTSDNVIRIYSL 202
>sp|O08658|NUP88_RAT Nuclear pore complex protein Nup88 OS=Rattus norvegicus GN=Nup88
PE=1 SV=1
Length = 742
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 16/151 (10%)
Query: 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSI---LAAFPSKVMRADVKLNFEVS 109
+NLV G L+ WD + VRL P S+ L+ + +++ + L FE+
Sbjct: 60 RNLVFGLGGE-LFLWDAEGSAF--LVVRLRGPSGGSVEPPLSQY-QRLLCINPPL-FEIH 114
Query: 110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSD--NKTIICRTVSVGSQIYFSSSNVI 164
++ ++ + LIG+ GL + L +G+ + T+ C T+ + + +F+SS +
Sbjct: 115 QVLLSPTQHHVALIGTKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTSSTSL 173
Query: 165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
+W+P D H+ +L+SD+V R+++L
Sbjct: 174 TLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSP----------SVHPV 512
I + DP R + H+ G+ SV L ++ + G DE ++ V +
Sbjct: 394 IKLHRDPKCPSRYHCSHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELTAEQKCFVEHI 453
Query: 513 LNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVV 552
L T P+P+ GF + D G + I +TST EC++
Sbjct: 454 LCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLI 492
>sp|Q8CEC0|NUP88_MOUSE Nuclear pore complex protein Nup88 OS=Mus musculus GN=Nup88 PE=2
SV=1
Length = 753
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 16/151 (10%)
Query: 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSI---LAAFPSKVMRADVKLNFEVS 109
+NLV G L+ WD + VRL P + L+ + +++ + L FE+
Sbjct: 60 RNLVFGLGGE-LFLWDAEGSAF--LVVRLRGPSGGGVEPPLSQY-QRLLCINPPL-FEIH 114
Query: 110 RISINRNGSALLLIGSDGLCVMYL---YGRTCSSD--NKTIICRTVSVGSQIYFSSSNVI 164
++ ++ + LIGS GL + L +G+ + T+ C T+ + + +F+SS +
Sbjct: 115 QVLLSPTQHHVALIGSKGLMALELPQRWGKDSEFEGGKATVNCSTIPIAER-FFTSSTSL 173
Query: 165 RTLQVSWHPYS--DTHLGILSSDSVFRLFNL 193
+W+P D H+ +L+SD+V R+++L
Sbjct: 174 TLKHAAWYPSEMLDPHIVLLTSDNVIRIYSL 204
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 114/289 (39%), Gaps = 35/289 (12%)
Query: 463 ITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNRSP----------SVHPV 512
I + DP R + H+ G+ SV L ++ + G DE ++ V +
Sbjct: 394 IKLHRDPKCPSRYHCSHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELTAEQKCFVEHI 453
Query: 513 LNTCQGETSSPSPLCGFVSLSDSFGYSWIVGVTSTQECVVIEMKTW-----NLLLPVQID 567
L T P+P+ GF + D G + I +TST EC++ + + LL Q D
Sbjct: 454 LCTKPLPCRQPAPIRGFWIVPDILGPTMIC-ITSTYECLIRPLLSTVHPASPPLLCTQED 512
Query: 568 SEKKSVDLGAKKERDTPDIISKEL-------LSGPKVILLPQASPNLRSVAADSIEGRST 620
+E L E TPD K + + P + A + + +A E
Sbjct: 513 AEVAESPLRILAE--TPDSFEKHIKRILQRSAANPAFLKNCSARSSEKDLAPPPEECLQL 570
Query: 621 LHQYFNLFQENYV--------EYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVE 672
+ + +F+E Y+ E +V QL+ + + R+S K L+
Sbjct: 571 ISRATQVFREQYILKQDLAKEEIQRRVKLLCDQKRKQLEDLNYCREERVSHLFRKSLR-- 628
Query: 673 ERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAEL 721
E RL ++ + A ++ + R++ + + A LS +E +K EL
Sbjct: 629 EMAERLADKYEEAKEKQEDIMNRMKKVLHSFHAQLPVLSDSERDMKKEL 677
>sp|Q9P382|NUP82_SCHPO Nucleoporin nup82 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup82 PE=3 SV=1
Length = 803
Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 109/270 (40%), Gaps = 44/270 (16%)
Query: 22 EEVEWVP-LQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVR 80
+EV W L+KHP + F PK+L A++ + + Q + + R
Sbjct: 8 QEVSWTDILEKHPALRWIKPIPEDWEIF---PKHLCAFES----FLYVAVGQEVRSLDCR 60
Query: 81 LGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS 140
L + + F K+ + L+F + +I +++NG L ++G + ++ L R+ S
Sbjct: 61 LLKHKNEASHKNFYKKLFNPE--LDFMIEQICLSKNGRFLAVVGKSKIVILGL--RSKLS 116
Query: 141 DNKTIICRTVSVG---------------------SQIYFSSSNVI----RTLQVSWHPY- 174
+ + + G S++ S VI + + V +HP
Sbjct: 117 EQNPLAESVSNFGESVNNFSNSEHQENGTNSLKLSEVTICSVAVINPSSQIVSVRFHPLG 176
Query: 175 -SDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASI---CPVDFSFGG- 229
S L +L+ S+ L+ + V+ P+ E L+ A + P F F
Sbjct: 177 KSGRSLVVLTETSLL-LYEAGNGVLMPDYEIPLKLTHQASNSFDADVDLHIPTAFCFSNV 235
Query: 230 DHLWDRFSVFVLFSDGSIYILCPVVPFGSV 259
W F++++L G ++ +CPV+P ++
Sbjct: 236 SQGWGVFTIYILTRGGDVFSVCPVMPANAM 265
>sp|A4RFH6|EIF3D_MAGO7 Eukaryotic translation initiation factor 3 subunit D OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=MGG_00341 PE=3 SV=1
Length = 573
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 280 VNSLAVRNSSLAISWL-EATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGP------ 332
VN + + N S + E F A+ET +PPA KA+ + FD S + +GP
Sbjct: 344 VNQVVIENESQKVDMEHENPFYNAAEET----EPPASKAYKYRKFDLSTNDEGPVYLVVR 399
Query: 333 -----LRKICHGGEDESLAVRG-------AECEGRAVSFLYNLVSKDSIVVTS 373
++K + GED+ L VR A+ G A+ + LVS+ VV +
Sbjct: 400 TELDAVQKNSNNGEDQFLTVRALNEFDNKAQGSGGALDWRSKLVSQRGAVVAT 452
>sp|B0VD55|HSCA_ACIBY Chaperone protein HscA homolog OS=Acinetobacter baumannii (strain
AYE) GN=hscA PE=3 SV=1
Length = 619
Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 688 QHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARL 743
QH ++ L+HL+ ++ L E ALK + D + +LDAL+S+ E+L+A+L
Sbjct: 517 QHAEEDKNLRHLKETKVEAERELESLEQALKVDADLLDEKQLDALNSAKESLKAQL 572
>sp|B7I5P9|HSCA_ACIB5 Chaperone protein HscA homolog OS=Acinetobacter baumannii (strain
AB0057) GN=hscA PE=3 SV=1
Length = 619
Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 688 QHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARL 743
QH ++ L+HL+ ++ L E ALK + D + +LDAL+S+ E+L+A+L
Sbjct: 517 QHAEEDKNLRHLKETKVEAERELESLEQALKVDADLLDEKQLDALNSAKESLKAQL 572
>sp|B7H3H4|HSCA_ACIB3 Chaperone protein HscA homolog OS=Acinetobacter baumannii (strain
AB307-0294) GN=hscA PE=3 SV=1
Length = 619
Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 688 QHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARL 743
QH ++ L+HL+ ++ L E ALK + D + +LDAL+S+ E+L+A+L
Sbjct: 517 QHAEEDKNLRHLKETKVEAERELESLEQALKVDADLLDEKQLDALNSAKESLKAQL 572
>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3
Length = 4303
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 242 FSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPE 301
+ G+ C VP GS + + ++ DA TF +R N+S A+SW+ AT+
Sbjct: 1829 LATGTNVSWCWAVPGGSSKRGPHVTMVFPDAGTFSIR-------LNASNAVSWVSATYNL 1881
Query: 302 VAQETI 307
A+E I
Sbjct: 1882 TAEEPI 1887
>sp|Q0WVL7|GOGC5_ARATH Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1
Length = 956
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 658 HARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLS-----G 712
++RL EA++K EER+ + ER+ + + N+LE +L LR G K L
Sbjct: 649 NSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRA 708
Query: 713 AEH-----ALKAELDHFEG 726
AE+ A K E D EG
Sbjct: 709 AENRQEYLAAKEEADTLEG 727
>sp|O14196|MU165_SCHPO Meiotically up-regulated gene 165 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug165 PE=1 SV=1
Length = 300
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 648 PQLKQIIDDQHARLSEAQNKILKVEERQSRLEERI-DHAVQQ------------HNILEQ 694
P + +ID+ A LS+ + + +E R SRLEE D ++ H +L +
Sbjct: 115 PVISSLIDED-ANLSQIKARKSVLESRFSRLEEAFRDFYIKNLEKTEDLIRTDSHFVLNK 173
Query: 695 RLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRR 745
L RN +K L +LDHF ++ +H S + LRR
Sbjct: 174 ELLSFRNDYEHRRKHYEKYSQCLNKQLDHFFSYKVTTVHKSYQRFATLLRR 224
>sp|Q9UJ71|CLC4K_HUMAN C-type lectin domain family 4 member K OS=Homo sapiens GN=CD207
PE=1 SV=2
Length = 328
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%), Gaps = 19/115 (16%)
Query: 691 ILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSP 750
+L+ R+ ++ L KK G E A GV++ ++ S+ +R++ +L S
Sbjct: 80 LLKGRVDNISTLDSEIKKNSDGMEAA---------GVQIQMVNESLGYVRSQFLKLKTSV 130
Query: 751 EGSPGNQQRQTLGKNYVQ----DAQISQLRSLMEKLSLVNSENLKKVKLVESALK 801
E + N Q Q L +++ + +AQI +L+S +EK S +N+ K++ ++ +L+
Sbjct: 131 EKA--NAQIQILTRSWEEVSTLNAQIPELKSDLEKASALNT----KIRALQGSLE 179
>sp|Q6ZQ12|NINL_MOUSE Ninein-like protein OS=Mus musculus GN=Ninl PE=2 SV=3
Length = 1394
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 730 DALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGK 764
D L + +E LR RL R QSP G+PG +R+ G+
Sbjct: 565 DELQAELEGLRLRLPRSRQSPAGTPGTHRRRIPGR 599
>sp|Q9CQU5|ZWINT_MOUSE ZW10 interactor OS=Mus musculus GN=Zwint PE=2 SV=1
Length = 252
Score = 34.3 bits (77), Expect = 4.2, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 602 QASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARL 661
Q+ L S A + T Q+ ++ + Y+++ + L PQ+K+ H +
Sbjct: 80 QSPDALASEDASRQKATETKEQWKDM-KATYMDHVDVIKCALSEALPQVKE----AHRKY 134
Query: 662 SEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAEL 721
+E Q ++E ++ LEE++ A +Q + ++RLQ+L + K+ + AL+
Sbjct: 135 TELQKAFEQLEAKKRVLEEKLQLAQKQWVLQQKRLQNLTKISAEVKRR---RKRALE--- 188
Query: 722 DHFEGVELDALHSSIEALRAR 742
+LD H +E L+ +
Sbjct: 189 ------KLDGSHQELETLKQQ 203
>sp|A7MGV1|EX7L_CROS8 Exodeoxyribonuclease 7 large subunit OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=xseA PE=3 SV=1
Length = 457
Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQ-SRLEERIDHAVQQHNILEQRL 696
++H L+ PQL RL+ Q ++++ +R + L+ R+ HA Q+ L QRL
Sbjct: 298 RLHHRLEQQHPQL---------RLARQQTLLMRLRQRMDNALDSRMRHATQRQTRLMQRL 348
Query: 697 QHLRNLPGAHK 707
+ LP H+
Sbjct: 349 NQQQPLPRLHR 359
>sp|Q8VIL3|ZWINT_RAT ZW10 interactor OS=Rattus norvegicus GN=Zwint PE=1 SV=1
Length = 266
Score = 33.1 bits (74), Expect = 9.1, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 628 FQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQ 687
+ Y+++ + L PQ+K+ H + +E Q ++E ++ LEE++ A +
Sbjct: 121 LKATYMDHVDVIKCALSEALPQVKE----AHRKYTELQKAFEQLEAKKRVLEEKLQLAQK 176
Query: 688 QHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRAR 742
Q + ++RLQ+L + K+ + AL+ +LD H +E L+ +
Sbjct: 177 QWVLQQKRLQNLTKISAEVKRR---RKRALE---------KLDGSHQELETLKQQ 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,683,184
Number of Sequences: 539616
Number of extensions: 13083107
Number of successful extensions: 37481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 36934
Number of HSP's gapped (non-prelim): 824
length of query: 808
length of database: 191,569,459
effective HSP length: 126
effective length of query: 682
effective length of database: 123,577,843
effective search space: 84280088926
effective search space used: 84280088926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)