Query 003591
Match_columns 808
No_of_seqs 170 out of 197
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4460 Nuclear pore complex, 100.0 1E-108 2E-113 894.4 45.5 718 1-801 1-740 (741)
2 PF10168 Nup88: Nuclear pore c 100.0 1E-105 3E-110 945.6 67.5 658 24-800 2-715 (717)
3 KOG3091 Nuclear pore complex, 97.8 0.00077 1.7E-08 76.3 16.9 155 640-800 336-496 (508)
4 PF13874 Nup54: Nucleoporin co 97.2 0.00048 1E-08 67.3 5.9 103 640-743 32-140 (141)
5 KOG4460 Nuclear pore complex, 96.9 0.011 2.4E-07 67.4 13.3 329 436-794 396-736 (741)
6 PTZ00421 coronin; Provisional 96.5 0.26 5.7E-06 57.9 21.2 163 51-252 31-197 (493)
7 KOG2096 WD40 repeat protein [G 95.7 0.22 4.7E-06 54.2 13.9 111 50-195 197-309 (420)
8 PF08317 Spc7: Spc7 kinetochor 95.6 1 2.2E-05 50.2 19.9 128 617-749 116-245 (325)
9 KOG1029 Endocytic adaptor prot 95.5 0.48 1E-05 56.6 17.2 67 674-749 438-508 (1118)
10 KOG0645 WD40 repeat protein [G 95.4 0.7 1.5E-05 49.4 16.5 76 105-195 105-181 (312)
11 cd00200 WD40 WD40 domain, foun 95.4 1.1 2.3E-05 45.4 17.8 112 106-252 94-206 (289)
12 PF08317 Spc7: Spc7 kinetochor 95.4 1.5 3.2E-05 48.9 20.1 73 664-745 154-227 (325)
13 KOG2048 WD40 repeat protein [G 95.3 0.31 6.7E-06 57.4 14.8 116 106-246 476-603 (691)
14 KOG1029 Endocytic adaptor prot 95.2 0.47 1E-05 56.6 15.5 37 767-803 483-519 (1118)
15 smart00787 Spc7 Spc7 kinetocho 95.0 2.1 4.6E-05 47.4 19.4 60 644-703 136-195 (312)
16 PRK11637 AmiB activator; Provi 94.9 2.1 4.7E-05 49.3 20.2 59 640-698 70-128 (428)
17 KOG1274 WD40 repeat protein [G 94.6 1.3 2.7E-05 54.2 17.6 120 52-195 98-219 (933)
18 KOG0946 ER-Golgi vesicle-tethe 94.6 0.76 1.6E-05 55.4 15.5 69 633-701 645-713 (970)
19 PTZ00420 coronin; Provisional 94.5 3.5 7.6E-05 49.4 21.1 163 52-252 30-196 (568)
20 KOG0772 Uncharacterized conser 94.5 0.36 7.9E-06 55.4 12.1 139 93-249 204-343 (641)
21 cd00200 WD40 WD40 domain, foun 94.5 4 8.7E-05 41.1 19.1 111 106-252 52-164 (289)
22 PF09755 DUF2046: Uncharacteri 94.3 3.2 6.9E-05 45.5 18.3 123 620-753 52-204 (310)
23 PF07888 CALCOCO1: Calcium bin 94.2 1.7 3.7E-05 51.2 17.1 61 640-700 166-226 (546)
24 PRK04778 septation ring format 94.1 2 4.4E-05 51.4 18.3 139 643-802 353-508 (569)
25 PRK10361 DNA recombination pro 93.9 1.5 3.2E-05 51.1 15.6 35 771-805 166-200 (475)
26 COG1842 PspA Phage shock prote 93.8 7.5 0.00016 41.1 19.6 77 620-700 3-80 (225)
27 KOG4673 Transcription factor T 93.7 3.8 8.3E-05 48.8 18.3 100 646-753 524-638 (961)
28 PRK09039 hypothetical protein; 93.6 1.2 2.6E-05 50.0 14.0 23 728-750 138-160 (343)
29 PF10168 Nup88: Nuclear pore c 93.5 1.5 3.2E-05 53.9 15.6 92 646-746 580-672 (717)
30 PF10498 IFT57: Intra-flagella 93.5 0.71 1.5E-05 52.0 12.0 107 666-800 252-358 (359)
31 KOG0291 WD40-repeat-containing 93.2 3.3 7.2E-05 49.8 17.0 72 51-137 16-88 (893)
32 PF07888 CALCOCO1: Calcium bin 93.1 1.6 3.5E-05 51.4 14.3 17 785-801 284-300 (546)
33 KOG0302 Ribosome Assembly prot 93.1 0.83 1.8E-05 50.8 11.2 80 105-198 302-382 (440)
34 PRK11637 AmiB activator; Provi 93.0 5.4 0.00012 46.1 18.7 64 635-701 72-135 (428)
35 KOG0266 WD40 repeat-containing 92.8 2.9 6.2E-05 48.7 16.2 111 105-249 203-314 (456)
36 KOG0643 Translation initiation 92.8 3.5 7.5E-05 44.3 14.9 133 51-196 32-179 (327)
37 PTZ00421 coronin; Provisional 92.6 6.1 0.00013 46.6 18.6 73 107-195 170-246 (493)
38 KOG0978 E3 ubiquitin ligase in 92.5 5.4 0.00012 48.4 18.0 148 634-801 457-611 (698)
39 KOG0291 WD40-repeat-containing 92.5 3.3 7.2E-05 49.8 15.9 135 61-252 413-549 (893)
40 KOG0264 Nucleosome remodeling 92.4 2.3 5.1E-05 48.2 13.8 156 61-248 239-399 (422)
41 PF00261 Tropomyosin: Tropomyo 92.2 2.8 6.1E-05 44.5 13.9 40 636-675 34-73 (237)
42 COG1579 Zn-ribbon protein, pos 92.0 8.6 0.00019 41.0 16.9 30 643-672 29-58 (239)
43 PF12718 Tropomyosin_1: Tropom 92.0 1.6 3.6E-05 42.8 10.9 27 769-795 114-140 (143)
44 PRK09039 hypothetical protein; 92.0 8.1 0.00018 43.4 17.8 9 643-651 58-66 (343)
45 KOG0996 Structural maintenance 91.9 6.3 0.00014 49.8 17.8 35 640-674 815-849 (1293)
46 KOG0250 DNA repair protein RAD 91.8 12 0.00025 47.3 19.9 70 676-747 284-357 (1074)
47 KOG0315 G-protein beta subunit 91.7 2.1 4.6E-05 45.5 11.7 110 52-195 136-246 (311)
48 TIGR02168 SMC_prok_B chromosom 91.7 5.1 0.00011 51.5 18.1 23 770-792 433-455 (1179)
49 TIGR03007 pepcterm_ChnLen poly 91.7 16 0.00034 42.9 20.7 22 728-749 276-297 (498)
50 KOG0289 mRNA splicing factor [ 91.6 6.1 0.00013 45.0 15.8 115 103-249 301-415 (506)
51 KOG0289 mRNA splicing factor [ 91.5 13 0.00028 42.5 18.2 116 51-197 304-422 (506)
52 PF15492 Nbas_N: Neuroblastoma 91.5 4.3 9.4E-05 43.9 14.1 119 110-251 2-125 (282)
53 TIGR02168 SMC_prok_B chromosom 91.5 5.4 0.00012 51.3 18.0 10 117-126 23-32 (1179)
54 KOG1446 Histone H3 (Lys4) meth 91.3 8.1 0.00017 42.3 16.0 122 51-195 141-263 (311)
55 PRK04863 mukB cell division pr 91.3 10 0.00022 50.4 20.1 35 763-800 431-465 (1486)
56 COG4026 Uncharacterized protei 91.3 4.2 9.2E-05 42.3 13.1 41 660-700 136-176 (290)
57 PF12128 DUF3584: Protein of u 91.2 5.5 0.00012 52.1 17.6 19 175-193 79-102 (1201)
58 TIGR02169 SMC_prok_A chromosom 91.2 7.9 0.00017 49.9 19.1 7 119-125 25-31 (1164)
59 TIGR03185 DNA_S_dndD DNA sulfu 91.2 8.7 0.00019 46.9 18.3 87 654-749 204-291 (650)
60 PF04012 PspA_IM30: PspA/IM30 91.1 18 0.00039 37.7 18.3 76 621-700 3-79 (221)
61 COG4942 Membrane-bound metallo 91.0 34 0.00074 39.3 21.2 28 776-803 195-222 (420)
62 PF00400 WD40: WD domain, G-be 91.0 0.81 1.7E-05 33.5 5.9 31 161-192 9-39 (39)
63 KOG0270 WD40 repeat-containing 90.9 6.7 0.00015 44.7 15.3 110 51-201 254-366 (463)
64 TIGR01843 type_I_hlyD type I s 90.8 6.6 0.00014 44.6 16.0 32 771-802 240-271 (423)
65 PF00261 Tropomyosin: Tropomyo 90.8 10 0.00022 40.4 16.3 63 635-697 68-130 (237)
66 PF04065 Not3: Not1 N-terminal 90.4 16 0.00035 38.8 17.1 164 620-796 16-189 (233)
67 PF14662 CCDC155: Coiled-coil 90.3 24 0.00052 36.3 17.8 33 769-801 157-189 (193)
68 KOG0973 Histone transcription 90.2 3.4 7.4E-05 51.3 13.4 182 51-266 140-369 (942)
69 PF12657 TFIIIC_delta: Transcr 90.2 1.4 3E-05 44.3 8.8 86 109-195 8-122 (173)
70 COG1579 Zn-ribbon protein, pos 90.2 15 0.00033 39.1 16.7 59 643-701 22-80 (239)
71 PF09726 Macoilin: Transmembra 90.2 3.8 8.2E-05 50.2 13.9 31 770-800 629-659 (697)
72 PF10234 Cluap1: Clusterin-ass 90.2 12 0.00025 40.6 16.0 68 648-726 165-232 (267)
73 KOG0971 Microtubule-associated 90.1 17 0.00037 44.9 18.5 24 730-753 420-443 (1243)
74 PF11932 DUF3450: Protein of u 90.1 2.8 6.1E-05 44.9 11.4 54 639-692 36-89 (251)
75 PF09325 Vps5: Vps5 C terminal 90.0 3.9 8.5E-05 42.8 12.3 102 628-739 113-215 (236)
76 KOG0273 Beta-transducin family 89.9 11 0.00025 43.2 16.1 81 106-207 360-449 (524)
77 PRK12704 phosphodiesterase; Pr 89.6 39 0.00086 40.2 21.4 32 769-802 153-184 (520)
78 COG1196 Smc Chromosome segrega 89.6 17 0.00037 47.5 20.0 31 670-700 818-848 (1163)
79 KOG0250 DNA repair protein RAD 89.5 8.1 0.00018 48.6 15.9 58 641-698 258-320 (1074)
80 KOG0650 WD40 repeat nucleolar 89.5 2.8 6.1E-05 49.2 11.3 129 106-253 522-680 (733)
81 TIGR03866 PQQ_ABC_repeats PQQ- 89.4 17 0.00037 37.9 16.8 115 107-250 116-234 (300)
82 KOG0647 mRNA export protein (c 89.4 5.2 0.00011 43.7 12.4 105 71-195 175-282 (347)
83 KOG0264 Nucleosome remodeling 89.3 8.7 0.00019 43.8 14.6 164 51-252 135-302 (422)
84 PF00038 Filament: Intermediat 89.2 23 0.0005 38.8 18.1 113 620-747 166-282 (312)
85 PF10282 Lactonase: Lactonase, 89.2 34 0.00074 38.1 19.7 124 105-250 86-219 (345)
86 COG1340 Uncharacterized archae 89.2 32 0.0007 37.7 18.4 42 708-749 126-180 (294)
87 KOG0272 U4/U6 small nuclear ri 89.1 2.2 4.7E-05 48.2 9.8 112 54-195 307-419 (459)
88 cd07627 BAR_Vps5p The Bin/Amph 89.0 13 0.00028 38.9 15.2 96 627-738 92-194 (216)
89 KOG0315 G-protein beta subunit 89.0 8.3 0.00018 41.2 13.3 116 55-196 12-156 (311)
90 KOG0804 Cytoplasmic Zn-finger 88.8 9.5 0.00021 43.7 14.5 54 647-700 349-402 (493)
91 PF04762 IKI3: IKI3 family; I 88.8 7.9 0.00017 49.2 15.7 136 105-258 304-461 (928)
92 KOG0963 Transcription factor/C 88.8 13 0.00027 44.4 16.0 74 678-751 180-266 (629)
93 PRK11028 6-phosphogluconolacto 88.8 40 0.00087 36.8 20.1 123 106-249 126-253 (330)
94 COG2433 Uncharacterized conser 88.8 6.5 0.00014 46.6 13.6 93 652-747 415-508 (652)
95 PRK11028 6-phosphogluconolacto 88.8 38 0.00083 37.0 19.5 116 106-249 80-201 (330)
96 COG1196 Smc Chromosome segrega 88.7 14 0.0003 48.3 18.2 18 110-127 17-34 (1163)
97 COG5185 HEC1 Protein involved 88.7 10 0.00022 43.5 14.6 34 711-745 329-362 (622)
98 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.6 7.8 0.00017 37.4 12.2 107 641-748 20-126 (132)
99 COG4372 Uncharacterized protei 88.4 50 0.0011 37.4 19.8 61 641-701 147-207 (499)
100 PRK11281 hypothetical protein; 88.3 4.4 9.5E-05 52.1 13.0 31 772-802 287-317 (1113)
101 KOG0804 Cytoplasmic Zn-finger 88.2 6.1 0.00013 45.1 12.5 48 652-699 347-394 (493)
102 PRK02224 chromosome segregatio 88.2 6.8 0.00015 49.3 14.7 13 642-654 184-196 (880)
103 KOG0286 G-protein beta subunit 88.2 28 0.0006 38.2 16.8 130 51-229 66-196 (343)
104 PLN00181 protein SPA1-RELATED; 88.1 27 0.00059 43.5 19.8 125 107-250 663-790 (793)
105 PF07889 DUF1664: Protein of u 87.7 14 0.0003 35.7 13.0 81 620-700 40-123 (126)
106 KOG0161 Myosin class II heavy 87.7 14 0.0003 49.9 17.2 23 470-492 563-586 (1930)
107 KOG0994 Extracellular matrix g 87.7 54 0.0012 41.9 20.6 39 663-701 1595-1633(1758)
108 PF11172 DUF2959: Protein of u 87.7 30 0.00064 35.9 16.0 154 632-793 11-186 (201)
109 PF05597 Phasin: Poly(hydroxya 87.6 23 0.00051 34.4 14.6 21 728-748 110-130 (132)
110 KOG0161 Myosin class II heavy 87.5 20 0.00044 48.4 18.6 32 769-800 1019-1050(1930)
111 TIGR03866 PQQ_ABC_repeats PQQ- 87.4 30 0.00065 36.1 17.1 70 107-195 32-104 (300)
112 KOG0263 Transcription initiati 87.4 3.1 6.7E-05 50.1 10.2 108 50-197 461-568 (707)
113 smart00787 Spc7 Spc7 kinetocho 87.4 6 0.00013 43.9 11.9 21 634-654 168-188 (312)
114 PF08662 eIF2A: Eukaryotic tra 87.1 12 0.00027 38.2 13.4 69 107-194 102-179 (194)
115 PF06160 EzrA: Septation ring 87.1 18 0.00039 43.4 16.6 42 673-725 379-420 (560)
116 KOG2150 CCR4-NOT transcription 87.1 12 0.00025 44.2 14.3 50 621-673 17-66 (575)
117 PLN00181 protein SPA1-RELATED; 86.8 47 0.001 41.4 20.8 111 106-250 533-645 (793)
118 PHA02562 46 endonuclease subun 86.8 59 0.0013 38.6 20.9 65 677-747 217-282 (562)
119 KOG1853 LIS1-interacting prote 86.8 48 0.001 35.4 18.3 68 728-799 99-166 (333)
120 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.7 31 0.00068 33.2 17.9 122 643-801 8-129 (132)
121 PF07106 TBPIP: Tat binding pr 86.4 13 0.00028 37.4 12.8 71 643-717 77-149 (169)
122 smart00806 AIP3 Actin interact 86.4 52 0.0011 37.9 18.6 107 675-800 212-319 (426)
123 TIGR03752 conj_TIGR03752 integ 86.3 6 0.00013 45.8 11.4 69 666-746 73-142 (472)
124 PRK04863 mukB cell division pr 86.3 13 0.00029 49.3 16.0 67 681-749 405-478 (1486)
125 TIGR02977 phageshock_pspA phag 86.3 11 0.00024 39.5 12.8 63 638-700 17-80 (219)
126 KOG0284 Polyadenylation factor 86.1 3.2 6.8E-05 46.8 8.8 129 25-194 164-294 (464)
127 PHA02562 46 endonuclease subun 86.1 12 0.00027 44.4 14.7 30 772-801 360-389 (562)
128 KOG0933 Structural maintenance 86.1 20 0.00044 44.9 16.1 79 620-698 705-805 (1174)
129 KOG0994 Extracellular matrix g 86.1 25 0.00055 44.6 16.8 86 645-742 1542-1634(1758)
130 PRK10929 putative mechanosensi 86.0 18 0.00038 46.7 16.4 127 660-795 273-401 (1109)
131 KOG3091 Nuclear pore complex, 86.0 11 0.00024 43.6 13.2 43 675-717 413-458 (508)
132 PRK00106 hypothetical protein; 85.8 67 0.0014 38.4 20.0 31 770-802 169-199 (535)
133 KOG0277 Peroxisomal targeting 85.7 11 0.00025 40.3 12.1 36 161-196 145-180 (311)
134 KOG4302 Microtubule-associated 85.6 15 0.00032 44.6 14.6 83 718-801 296-388 (660)
135 PF04156 IncA: IncA protein; 85.4 35 0.00075 34.7 15.6 25 676-700 126-150 (191)
136 PF06401 Alpha-2-MRAP_C: Alpha 85.3 21 0.00046 37.4 13.8 144 647-802 26-204 (214)
137 PF09726 Macoilin: Transmembra 85.3 7.7 0.00017 47.6 12.4 80 643-722 423-502 (697)
138 PF15070 GOLGA2L5: Putative go 85.1 41 0.00089 40.9 18.2 35 768-802 158-192 (617)
139 KOG0980 Actin-binding protein 85.0 18 0.0004 44.6 14.9 24 275-298 68-91 (980)
140 PF03915 AIP3: Actin interacti 84.8 6.8 0.00015 45.2 11.0 108 675-801 208-316 (424)
141 KOG0308 Conserved WD40 repeat- 84.7 15 0.00033 43.8 13.7 152 52-249 129-281 (735)
142 PRK02224 chromosome segregatio 84.7 38 0.00082 42.7 18.7 33 643-675 514-546 (880)
143 PF05384 DegS: Sensor protein 84.6 44 0.00096 33.5 15.2 56 633-688 8-63 (159)
144 KOG0996 Structural maintenance 84.6 10 0.00022 48.1 12.8 33 771-803 936-968 (1293)
145 PF12128 DUF3584: Protein of u 84.5 27 0.00059 45.8 17.7 73 676-749 316-388 (1201)
146 PRK03918 chromosome segregatio 84.3 39 0.00085 42.5 18.6 28 774-801 304-331 (880)
147 KOG0971 Microtubule-associated 84.3 77 0.0017 39.6 19.4 75 712-789 1019-1118(1243)
148 KOG0995 Centromere-associated 84.1 1E+02 0.0022 36.8 20.7 54 618-672 268-321 (581)
149 KOG2110 Uncharacterized conser 84.0 30 0.00066 38.8 14.9 108 97-230 121-229 (391)
150 TIGR00606 rad50 rad50. This fa 83.9 26 0.00057 46.4 17.3 26 676-701 884-909 (1311)
151 PF15070 GOLGA2L5: Putative go 83.5 59 0.0013 39.5 18.6 30 643-672 34-63 (617)
152 PF15619 Lebercilin: Ciliary p 83.2 61 0.0013 33.6 16.7 33 771-803 126-158 (194)
153 KOG0290 Conserved WD40 repeat- 83.2 6.9 0.00015 42.6 9.4 39 160-198 284-322 (364)
154 PF13870 DUF4201: Domain of un 82.9 56 0.0012 33.0 15.8 79 660-747 92-172 (177)
155 TIGR03319 YmdA_YtgF conserved 82.9 1.1E+02 0.0024 36.4 22.6 31 770-802 148-178 (514)
156 PF15619 Lebercilin: Ciliary p 82.7 27 0.00059 36.1 13.4 15 788-802 175-189 (194)
157 KOG3647 Predicted coiled-coil 82.6 16 0.00035 39.2 11.7 61 643-703 103-163 (338)
158 PF06005 DUF904: Protein of un 82.6 14 0.0003 32.2 9.4 59 643-701 9-68 (72)
159 KOG2110 Uncharacterized conser 82.6 56 0.0012 36.8 16.3 76 105-196 173-250 (391)
160 KOG0318 WD40 repeat stress pro 82.5 21 0.00046 41.7 13.4 111 57-195 450-561 (603)
161 PF10186 Atg14: UV radiation r 82.4 17 0.00037 39.3 12.6 6 732-737 138-143 (302)
162 PF05278 PEARLI-4: Arabidopsis 82.3 18 0.00038 39.2 12.1 64 638-701 193-256 (269)
163 PF00038 Filament: Intermediat 82.0 42 0.00092 36.7 15.6 37 664-700 73-109 (312)
164 PF07569 Hira: TUP1-like enhan 82.0 3.4 7.3E-05 43.4 6.7 73 176-254 22-96 (219)
165 KOG0266 WD40 repeat-containing 81.8 17 0.00036 42.4 13.0 85 94-195 280-365 (456)
166 KOG0976 Rho/Rac1-interacting s 81.8 19 0.00042 43.8 13.1 129 663-804 334-479 (1265)
167 cd07666 BAR_SNX7 The Bin/Amphi 81.7 25 0.00054 37.7 13.0 79 631-738 143-221 (243)
168 KOG2055 WD40 repeat protein [G 81.6 10 0.00022 43.5 10.5 126 51-194 355-512 (514)
169 PRK03918 chromosome segregatio 81.6 17 0.00037 45.8 13.8 6 598-603 130-135 (880)
170 TIGR01005 eps_transp_fam exopo 81.4 54 0.0012 40.7 17.9 63 639-701 195-265 (754)
171 TIGR00634 recN DNA repair prot 81.4 54 0.0012 39.4 17.4 49 639-687 169-223 (563)
172 KOG0646 WD40 repeat protein [G 81.3 32 0.00068 39.7 14.1 117 107-249 125-243 (476)
173 PF12795 MscS_porin: Mechanose 81.3 64 0.0014 34.2 16.2 74 640-716 80-153 (240)
174 PRK10929 putative mechanosensi 81.3 38 0.00082 43.8 16.5 26 674-699 66-91 (1109)
175 PF10211 Ax_dynein_light: Axon 81.2 47 0.001 34.2 14.5 66 661-737 122-187 (189)
176 cd07623 BAR_SNX1_2 The Bin/Amp 81.2 48 0.001 34.9 15.0 92 631-737 103-199 (224)
177 TIGR01000 bacteriocin_acc bact 81.1 66 0.0014 37.5 17.5 17 729-745 245-261 (457)
178 TIGR00606 rad50 rad50. This fa 81.0 27 0.00058 46.3 15.8 13 235-247 149-161 (1311)
179 KOG0977 Nuclear envelope prote 80.9 89 0.0019 37.3 18.2 63 638-700 106-168 (546)
180 PF08397 IMD: IRSp53/MIM homol 80.9 50 0.0011 34.6 15.0 74 677-750 55-132 (219)
181 PF06160 EzrA: Septation ring 80.8 60 0.0013 39.1 17.4 105 620-725 282-389 (560)
182 PF12325 TMF_TATA_bd: TATA ele 80.8 28 0.0006 33.3 11.7 99 618-747 18-116 (120)
183 KOG0964 Structural maintenance 80.8 19 0.00042 44.9 12.9 138 637-794 663-802 (1200)
184 PF01442 Apolipoprotein: Apoli 80.8 62 0.0013 32.0 17.1 28 635-662 57-84 (202)
185 KOG0639 Transducin-like enhanc 80.6 14 0.0003 43.0 11.0 173 57-259 426-628 (705)
186 KOG0995 Centromere-associated 80.6 28 0.0006 41.2 13.7 70 715-798 297-367 (581)
187 PRK04778 septation ring format 80.5 1E+02 0.0023 37.1 19.3 91 621-719 287-387 (569)
188 cd07596 BAR_SNX The Bin/Amphip 80.3 53 0.0011 33.4 14.8 96 628-739 95-197 (218)
189 COG3883 Uncharacterized protei 80.1 94 0.002 33.7 18.1 63 639-701 46-112 (265)
190 PF12718 Tropomyosin_1: Tropom 80.0 57 0.0012 32.1 14.0 77 621-698 19-98 (143)
191 PTZ00420 coronin; Provisional 80.0 26 0.00057 42.1 13.9 36 161-196 72-107 (568)
192 KOG4674 Uncharacterized conser 80.0 45 0.00097 44.9 16.6 43 706-749 753-795 (1822)
193 TIGR02680 conserved hypothetic 79.9 1.2E+02 0.0026 40.5 21.1 74 628-701 252-325 (1353)
194 KOG4674 Uncharacterized conser 79.8 60 0.0013 43.7 17.7 153 643-803 201-356 (1822)
195 PLN03229 acetyl-coenzyme A car 79.7 48 0.001 40.7 15.7 100 640-745 457-589 (762)
196 PRK11281 hypothetical protein; 79.5 49 0.0011 43.0 16.7 13 767-779 189-201 (1113)
197 PF14712 Snapin_Pallidin: Snap 79.2 14 0.0003 33.1 8.8 30 717-747 62-91 (92)
198 PF04111 APG6: Autophagy prote 79.1 36 0.00077 37.9 13.7 77 717-794 104-190 (314)
199 PF05667 DUF812: Protein of un 79.0 69 0.0015 38.8 16.9 145 638-796 419-573 (594)
200 PF08662 eIF2A: Eukaryotic tra 78.8 28 0.00061 35.6 12.1 30 164-194 60-91 (194)
201 PF05667 DUF812: Protein of un 78.0 45 0.00097 40.4 15.0 10 292-301 101-110 (594)
202 KOG0295 WD40 repeat-containing 77.8 58 0.0013 36.7 14.4 72 107-195 237-323 (406)
203 PF04912 Dynamitin: Dynamitin 77.8 46 0.001 38.0 14.6 15 641-655 264-278 (388)
204 COG0419 SbcC ATPase involved i 77.8 1.1E+02 0.0024 38.9 19.4 51 673-725 586-636 (908)
205 COG4477 EzrA Negative regulato 77.6 1E+02 0.0022 36.6 16.9 142 616-796 323-466 (570)
206 PF13514 AAA_27: AAA domain 77.6 61 0.0013 42.3 17.3 101 647-749 661-765 (1111)
207 KOG0977 Nuclear envelope prote 77.5 11 0.00023 44.7 9.4 129 620-749 246-392 (546)
208 KOG0319 WD40-repeat-containing 77.5 40 0.00087 40.9 14.0 151 60-249 21-175 (775)
209 KOG0980 Actin-binding protein 77.3 1.1E+02 0.0023 38.3 17.6 25 769-793 525-549 (980)
210 PF06008 Laminin_I: Laminin Do 77.2 49 0.0011 35.6 13.9 26 673-698 87-112 (264)
211 PF14655 RAB3GAP2_N: Rab3 GTPa 77.1 12 0.00026 43.1 9.6 82 109-194 5-97 (415)
212 PF10454 DUF2458: Protein of u 77.0 44 0.00096 33.2 12.2 116 640-779 22-140 (150)
213 PF03962 Mnd1: Mnd1 family; I 76.9 14 0.00031 38.0 9.1 59 640-698 64-128 (188)
214 KOG0978 E3 ubiquitin ligase in 76.7 71 0.0015 39.2 16.0 100 640-751 526-625 (698)
215 KOG1036 Mitotic spindle checkp 76.5 8.8 0.00019 42.0 7.7 77 101-198 10-87 (323)
216 KOG4809 Rab6 GTPase-interactin 76.4 59 0.0013 38.3 14.5 32 712-744 324-355 (654)
217 KOG0284 Polyadenylation factor 76.3 7.7 0.00017 43.9 7.4 103 51-194 232-337 (464)
218 KOG1003 Actin filament-coating 76.3 48 0.001 34.2 12.3 34 641-674 7-40 (205)
219 PF10174 Cast: RIM-binding pro 76.2 95 0.002 38.8 17.3 55 680-745 436-490 (775)
220 PF04111 APG6: Autophagy prote 76.1 7.1 0.00015 43.4 7.2 87 643-741 48-134 (314)
221 PRK10698 phage shock protein P 75.9 47 0.001 35.1 13.0 56 645-700 24-80 (222)
222 KOG1407 WD40 repeat protein [F 75.8 1.2E+02 0.0027 32.8 16.9 168 55-249 80-277 (313)
223 PF04582 Reo_sigmaC: Reovirus 75.8 1.4 3.1E-05 48.6 1.6 125 660-800 29-156 (326)
224 KOG0243 Kinesin-like protein [ 75.6 1.5E+02 0.0033 38.0 18.8 56 618-674 457-512 (1041)
225 PF08614 ATG16: Autophagy prot 75.4 31 0.00067 35.5 11.3 61 638-698 123-183 (194)
226 PRK01742 tolB translocation pr 75.2 54 0.0012 37.7 14.5 74 107-198 205-282 (429)
227 KOG0272 U4/U6 small nuclear ri 75.2 12 0.00026 42.5 8.6 81 107-205 177-258 (459)
228 COG1842 PspA Phage shock prote 74.9 1.2E+02 0.0026 32.2 16.0 118 619-746 27-146 (225)
229 PF04012 PspA_IM30: PspA/IM30 74.2 1.2E+02 0.0025 31.7 16.9 121 619-749 26-148 (221)
230 PF07798 DUF1640: Protein of u 74.1 56 0.0012 33.1 12.6 16 656-671 55-70 (177)
231 smart00502 BBC B-Box C-termina 74.1 73 0.0016 29.3 13.3 25 712-736 57-81 (127)
232 PF10282 Lactonase: Lactonase, 74.0 1.5E+02 0.0033 32.9 22.5 162 54-243 148-311 (345)
233 KOG4673 Transcription factor T 73.9 1.3E+02 0.0028 36.6 16.6 26 676-701 412-437 (961)
234 PF04841 Vps16_N: Vps16, N-ter 73.8 43 0.00092 38.6 13.1 114 109-252 32-154 (410)
235 KOG0294 WD40 repeat-containing 73.7 55 0.0012 36.3 12.7 145 54-199 99-286 (362)
236 KOG0612 Rho-associated, coiled 73.6 33 0.0007 44.0 12.4 15 792-806 701-715 (1317)
237 PRK10803 tol-pal system protei 73.6 18 0.00038 39.2 9.3 43 659-701 61-104 (263)
238 smart00320 WD40 WD40 repeats. 73.3 7.7 0.00017 25.7 4.4 29 163-192 12-40 (40)
239 KOG1937 Uncharacterized conser 73.2 1.5E+02 0.0032 34.5 16.3 30 718-748 344-376 (521)
240 PRK05137 tolB translocation pr 73.2 80 0.0017 36.3 15.2 71 107-195 203-277 (435)
241 cd07664 BAR_SNX2 The Bin/Amphi 73.0 98 0.0021 33.0 14.5 93 631-738 113-210 (234)
242 KOG1760 Molecular chaperone Pr 72.9 31 0.00067 33.0 9.3 59 643-701 28-116 (131)
243 KOG0612 Rho-associated, coiled 72.7 25 0.00054 45.0 11.2 7 237-243 149-155 (1317)
244 PF05010 TACC: Transforming ac 72.7 1.1E+02 0.0024 32.0 14.5 53 649-701 87-139 (207)
245 COG3074 Uncharacterized protei 72.5 63 0.0014 27.9 10.7 56 647-702 20-76 (79)
246 PF13851 GAS: Growth-arrest sp 72.5 1.3E+02 0.0027 31.4 16.3 68 674-745 94-161 (201)
247 PRK11020 hypothetical protein; 72.5 34 0.00075 32.2 9.4 48 667-716 32-80 (118)
248 PF10267 Tmemb_cc2: Predicted 72.4 48 0.001 38.1 12.6 86 638-747 226-318 (395)
249 KOG0963 Transcription factor/C 72.2 57 0.0012 39.1 13.4 40 766-805 231-270 (629)
250 PF11559 ADIP: Afadin- and alp 71.9 45 0.00097 32.7 11.0 45 640-684 54-98 (151)
251 KOG4328 WD40 protein [Function 71.5 22 0.00047 40.9 9.5 96 73-194 302-399 (498)
252 PF07889 DUF1664: Protein of u 71.4 71 0.0015 30.9 11.7 45 656-700 50-95 (126)
253 PF09789 DUF2353: Uncharacteri 71.2 97 0.0021 34.6 14.3 50 643-696 4-53 (319)
254 PRK01156 chromosome segregatio 71.0 1.6E+02 0.0034 37.4 18.3 30 772-801 471-500 (895)
255 COG4026 Uncharacterized protei 71.0 34 0.00073 35.9 9.9 62 639-700 136-204 (290)
256 PRK10869 recombination and rep 70.9 24 0.00052 42.3 10.5 62 687-748 296-362 (553)
257 PF03148 Tektin: Tektin family 70.8 1.4E+02 0.0031 34.1 16.2 112 632-749 238-353 (384)
258 KOG1408 WD40 repeat protein [F 70.7 31 0.00066 41.9 10.7 74 108-195 327-411 (1080)
259 PF04136 Sec34: Sec34-like fam 70.4 1.2E+02 0.0026 30.3 13.9 58 643-700 12-69 (157)
260 PRK03629 tolB translocation pr 70.4 1.3E+02 0.0028 34.7 16.1 71 107-195 200-276 (429)
261 PF10498 IFT57: Intra-flagella 70.2 68 0.0015 36.4 13.3 76 638-713 252-327 (359)
262 PF05557 MAD: Mitotic checkpoi 70.2 1.4 3.1E-05 54.2 0.0 63 636-698 84-146 (722)
263 TIGR03007 pepcterm_ChnLen poly 70.0 59 0.0013 38.2 13.4 87 716-803 201-294 (498)
264 KOG0279 G protein beta subunit 69.8 61 0.0013 35.4 11.9 122 51-195 193-314 (315)
265 TIGR02658 TTQ_MADH_Hv methylam 69.7 2E+02 0.0044 32.6 18.1 29 108-136 107-138 (352)
266 COG2433 Uncharacterized conser 69.4 61 0.0013 38.8 12.8 90 636-725 427-537 (652)
267 PF11932 DUF3450: Protein of u 69.2 1.6E+02 0.0036 31.4 17.3 107 639-745 50-164 (251)
268 PF15030 DUF4527: Protein of u 69.2 20 0.00043 38.0 7.9 101 620-722 20-124 (277)
269 cd07630 BAR_SNX_like The Bin/A 69.2 83 0.0018 32.7 12.7 78 631-736 97-174 (198)
270 KOG2106 Uncharacterized conser 69.2 25 0.00054 41.0 9.4 79 164-252 201-295 (626)
271 PRK10361 DNA recombination pro 69.1 19 0.00041 42.2 8.7 26 772-797 135-160 (475)
272 COG1340 Uncharacterized archae 68.9 1.8E+02 0.0038 32.2 15.4 61 641-701 154-214 (294)
273 PF01519 DUF16: Protein of unk 68.9 56 0.0012 30.3 9.9 51 649-699 50-100 (102)
274 PF13863 DUF4200: Domain of un 68.9 29 0.00063 32.7 8.7 73 676-748 28-102 (126)
275 TIGR01069 mutS2 MutS2 family p 68.8 26 0.00056 43.7 10.4 65 634-698 500-568 (771)
276 PRK00409 recombination and DNA 68.8 31 0.00066 43.2 11.1 10 620-629 503-512 (782)
277 PRK00106 hypothetical protein; 68.8 1.1E+02 0.0024 36.5 15.1 9 785-793 298-306 (535)
278 KOG0641 WD40 repeat protein [G 68.7 1.6E+02 0.0036 31.2 19.3 174 57-252 39-271 (350)
279 KOG0772 Uncharacterized conser 68.7 42 0.00091 39.3 11.0 114 54-200 283-399 (641)
280 PF09787 Golgin_A5: Golgin sub 68.5 41 0.00089 39.9 11.6 16 657-672 212-227 (511)
281 KOG0279 G protein beta subunit 68.5 1.9E+02 0.0041 31.8 16.3 84 94-195 97-181 (315)
282 TIGR01843 type_I_hlyD type I s 68.3 1.2E+02 0.0027 34.2 15.2 12 731-742 214-225 (423)
283 PRK01156 chromosome segregatio 68.1 1.2E+02 0.0027 38.4 16.5 22 677-698 253-274 (895)
284 COG4372 Uncharacterized protei 67.9 2.2E+02 0.0049 32.4 16.4 37 766-802 234-270 (499)
285 KOG0640 mRNA cleavage stimulat 67.9 26 0.00057 38.6 8.8 141 19-193 149-290 (430)
286 PLN03188 kinesin-12 family pro 67.8 77 0.0017 41.2 14.0 94 631-725 1062-1168(1320)
287 PF15272 BBP1_C: Spindle pole 67.7 1.6E+02 0.0035 30.6 14.8 17 790-806 138-154 (196)
288 KOG1445 Tumor-specific antigen 67.6 9 0.00019 45.5 5.6 73 163-252 677-749 (1012)
289 COG1382 GimC Prefoldin, chaper 67.5 30 0.00064 33.1 8.1 25 649-673 27-51 (119)
290 cd07643 I-BAR_IMD_MIM Inverse 67.5 92 0.002 33.0 12.4 52 675-726 66-118 (231)
291 cd07621 BAR_SNX5_6 The Bin/Amp 67.5 90 0.002 33.0 12.6 80 631-736 114-193 (219)
292 KOG3684 Ca2+-activated K+ chan 67.4 35 0.00076 39.5 10.1 20 619-638 361-380 (489)
293 KOG0933 Structural maintenance 67.3 3.6E+02 0.0078 34.6 21.0 151 640-805 253-434 (1174)
294 PF05010 TACC: Transforming ac 67.2 99 0.0021 32.4 12.7 22 636-657 42-63 (207)
295 PF09731 Mitofilin: Mitochondr 67.2 1.8E+02 0.0039 35.0 17.0 8 715-722 359-366 (582)
296 PRK03629 tolB translocation pr 67.1 2E+02 0.0044 33.1 16.8 72 108-198 245-321 (429)
297 KOG0310 Conserved WD40 repeat- 67.0 95 0.0021 36.1 13.4 111 57-196 76-186 (487)
298 TIGR02449 conserved hypothetic 66.9 68 0.0015 27.4 9.3 51 642-699 11-61 (65)
299 PF10046 BLOC1_2: Biogenesis o 66.8 83 0.0018 28.9 10.8 68 618-686 23-93 (99)
300 PF09744 Jnk-SapK_ap_N: JNK_SA 66.6 1.5E+02 0.0032 29.8 15.0 56 670-729 86-141 (158)
301 KOG0517 Beta-spectrin [Cytoske 66.5 26 0.00056 46.6 9.7 148 641-802 880-1055(2473)
302 KOG4643 Uncharacterized coiled 66.3 3E+02 0.0065 35.2 18.0 33 772-804 511-543 (1195)
303 KOG1587 Cytoplasmic dynein int 66.2 2.1E+02 0.0045 34.6 16.7 130 107-252 244-377 (555)
304 KOG0647 mRNA export protein (c 66.2 65 0.0014 35.5 11.3 113 99-218 22-163 (347)
305 PF15397 DUF4618: Domain of un 66.1 1.1E+02 0.0023 33.3 12.9 31 643-673 122-152 (258)
306 PF05278 PEARLI-4: Arabidopsis 66.0 69 0.0015 34.8 11.5 39 710-749 226-264 (269)
307 PF09755 DUF2046: Uncharacteri 65.9 2.2E+02 0.0048 31.6 18.4 31 774-804 272-302 (310)
308 KOG0964 Structural maintenance 65.8 3.1E+02 0.0067 35.0 18.0 72 655-726 324-404 (1200)
309 PF04344 CheZ: Chemotaxis phos 65.5 47 0.001 34.9 10.1 61 663-723 38-104 (214)
310 cd07665 BAR_SNX1 The Bin/Amphi 65.4 2E+02 0.0042 30.8 15.7 24 715-738 187-210 (234)
311 COG0419 SbcC ATPase involved i 65.0 93 0.002 39.6 14.5 25 778-802 418-442 (908)
312 KOG4643 Uncharacterized coiled 64.8 2.6E+02 0.0056 35.7 17.1 107 638-753 188-297 (1195)
313 cd07660 BAR_Arfaptin The Bin/A 64.7 1.9E+02 0.004 30.3 15.0 140 653-798 3-166 (201)
314 PF15397 DUF4618: Domain of un 64.6 1.5E+02 0.0032 32.2 13.7 20 729-748 83-102 (258)
315 PLN02939 transferase, transfer 64.5 39 0.00085 42.9 10.7 68 729-801 295-368 (977)
316 PF14643 DUF4455: Domain of un 64.3 1.8E+02 0.0039 34.2 15.7 131 613-743 246-400 (473)
317 KOG0240 Kinesin (SMY1 subfamil 63.8 3E+02 0.0064 33.1 16.7 122 675-803 472-605 (607)
318 TIGR02680 conserved hypothetic 63.7 4.8E+02 0.01 35.1 21.0 44 658-701 275-318 (1353)
319 PF03962 Mnd1: Mnd1 family; I 63.6 56 0.0012 33.6 10.1 84 659-747 69-155 (188)
320 COG3264 Small-conductance mech 63.6 1.3E+02 0.0029 37.6 14.5 34 676-709 103-136 (835)
321 KOG0946 ER-Golgi vesicle-tethe 63.6 2E+02 0.0042 35.9 15.6 27 771-797 912-938 (970)
322 TIGR01005 eps_transp_fam exopo 63.5 3.6E+02 0.0077 33.6 19.0 8 689-696 297-304 (754)
323 KOG0243 Kinesin-like protein [ 63.5 56 0.0012 41.6 11.6 17 731-747 536-552 (1041)
324 PRK09343 prefoldin subunit bet 63.5 93 0.002 29.7 10.9 44 649-692 4-47 (121)
325 cd07653 F-BAR_CIP4-like The F- 63.5 1.9E+02 0.0041 30.6 14.6 68 631-698 80-151 (251)
326 PRK15422 septal ring assembly 63.4 54 0.0012 29.0 8.3 56 647-702 20-76 (79)
327 PF10805 DUF2730: Protein of u 63.4 62 0.0013 30.1 9.4 53 640-692 44-98 (106)
328 TIGR03185 DNA_S_dndD DNA sulfu 63.3 3.5E+02 0.0077 33.1 21.1 24 729-752 393-416 (650)
329 PRK06975 bifunctional uroporph 63.3 1.1E+02 0.0023 37.7 14.1 108 640-747 352-502 (656)
330 KOG4302 Microtubule-associated 63.1 3.2E+02 0.0069 33.6 17.5 131 666-802 54-192 (660)
331 PF10174 Cast: RIM-binding pro 63.1 1.3E+02 0.0029 37.5 14.8 13 713-725 411-423 (775)
332 PF13949 ALIX_LYPXL_bnd: ALIX 62.8 98 0.0021 33.5 12.5 133 663-800 26-171 (296)
333 KOG0979 Structural maintenance 62.7 3.2E+02 0.007 34.9 17.5 26 777-802 308-333 (1072)
334 KOG0307 Vesicle coat complex C 62.6 15 0.00032 46.3 6.5 120 51-207 127-252 (1049)
335 PF04799 Fzo_mitofusin: fzo-li 62.5 61 0.0013 32.9 9.7 49 635-687 117-165 (171)
336 PF04740 LXG: LXG domain of WX 62.4 1.1E+02 0.0023 31.3 12.1 34 641-674 6-39 (204)
337 PF10481 CENP-F_N: Cenp-F N-te 62.3 1.5E+02 0.0032 32.3 12.9 22 784-805 285-306 (307)
338 PLN02939 transferase, transfer 62.3 88 0.0019 39.9 13.1 59 688-748 195-254 (977)
339 KOG1063 RNA polymerase II elon 62.1 73 0.0016 38.6 11.6 124 105-251 572-697 (764)
340 TIGR01837 PHA_granule_1 poly(h 62.0 1.4E+02 0.003 28.4 11.7 21 727-747 96-116 (118)
341 PF15035 Rootletin: Ciliary ro 61.8 1.3E+02 0.0027 31.0 12.1 94 655-749 63-163 (182)
342 PF13747 DUF4164: Domain of un 61.6 1.3E+02 0.0027 27.3 10.8 21 664-684 37-57 (89)
343 KOG2196 Nuclear porin [Nuclear 61.5 1.9E+02 0.0041 31.0 13.4 71 669-741 174-247 (254)
344 PF05276 SH3BP5: SH3 domain-bi 61.5 2.3E+02 0.005 30.4 17.7 154 640-804 41-215 (239)
345 COG3883 Uncharacterized protei 61.5 2.5E+02 0.0053 30.6 18.8 64 635-698 35-98 (265)
346 KOG2048 WD40 repeat protein [G 61.5 1E+02 0.0022 37.3 12.7 77 105-196 110-186 (691)
347 KOG0318 WD40 repeat stress pro 61.4 3.4E+02 0.0074 32.3 16.8 98 61-195 211-309 (603)
348 PF13851 GAS: Growth-arrest sp 61.4 2.1E+02 0.0045 29.8 15.1 51 648-698 30-80 (201)
349 PRK10869 recombination and rep 61.4 1.7E+02 0.0036 35.3 15.0 50 638-687 164-219 (553)
350 TIGR03545 conserved hypothetic 61.3 35 0.00076 40.9 9.2 18 773-792 279-296 (555)
351 PF05597 Phasin: Poly(hydroxya 61.2 1.6E+02 0.0034 28.7 12.0 38 693-742 93-131 (132)
352 KOG1007 WD repeat protein TSSC 61.2 21 0.00045 39.0 6.5 84 106-198 64-156 (370)
353 TIGR01000 bacteriocin_acc bact 61.1 1.5E+02 0.0032 34.6 14.3 83 670-752 169-261 (457)
354 KOG1446 Histone H3 (Lys4) meth 60.8 2.7E+02 0.0059 30.9 17.6 155 52-249 102-258 (311)
355 PF10481 CENP-F_N: Cenp-F N-te 60.7 1.7E+02 0.0037 31.8 13.0 22 728-749 110-131 (307)
356 PRK09841 cryptic autophosphory 60.4 3.1E+02 0.0068 34.1 17.6 62 640-701 269-332 (726)
357 KOG2129 Uncharacterized conser 60.2 3.2E+02 0.0069 31.5 15.8 23 676-698 204-226 (552)
358 PF04849 HAP1_N: HAP1 N-termin 60.2 1.1E+02 0.0023 34.0 11.9 50 649-698 231-280 (306)
359 PF08172 CASP_C: CASP C termin 60.2 25 0.00053 37.9 7.0 48 640-687 88-135 (248)
360 KOG1274 WD40 repeat protein [G 60.1 67 0.0014 40.0 11.1 109 52-195 149-263 (933)
361 KOG4378 Nuclear protein COP1 [ 60.0 1.3E+02 0.0029 35.2 12.8 106 61-195 89-196 (673)
362 PF08826 DMPK_coil: DMPK coile 60.0 84 0.0018 26.5 8.6 40 662-701 14-53 (61)
363 KOG0263 Transcription initiati 59.8 21 0.00046 43.3 7.0 79 94-195 569-650 (707)
364 KOG0249 LAR-interacting protei 59.6 67 0.0015 39.1 10.8 100 635-741 153-258 (916)
365 KOG0305 Anaphase promoting com 59.3 73 0.0016 37.5 11.1 104 51-196 354-463 (484)
366 PRK03947 prefoldin subunit alp 59.3 1.1E+02 0.0025 29.4 11.0 36 667-702 14-49 (140)
367 TIGR01069 mutS2 MutS2 family p 58.9 65 0.0014 40.3 11.3 10 620-629 498-507 (771)
368 PF08581 Tup_N: Tup N-terminal 58.8 1.3E+02 0.0029 26.7 11.9 55 629-684 10-64 (79)
369 KOG2008 BTK-associated SH3-dom 58.8 2.9E+02 0.0063 30.6 19.1 92 621-723 36-131 (426)
370 KOG1963 WD40 repeat protein [G 58.7 2.5E+02 0.0054 35.0 15.6 107 52-195 217-323 (792)
371 PRK11519 tyrosine kinase; Prov 58.6 4.5E+02 0.0097 32.7 18.6 53 621-673 242-295 (719)
372 PRK12705 hypothetical protein; 58.5 2.7E+02 0.0058 33.2 15.6 14 678-691 93-106 (508)
373 KOG0962 DNA repair protein RAD 58.1 3.5E+02 0.0076 35.7 17.3 31 763-793 964-994 (1294)
374 PF07798 DUF1640: Protein of u 57.9 1.7E+02 0.0037 29.6 12.3 15 728-742 139-153 (177)
375 PF10158 LOH1CR12: Tumour supp 57.8 1.9E+02 0.0041 28.1 12.9 77 620-701 39-115 (131)
376 PF14362 DUF4407: Domain of un 57.6 2.3E+02 0.0049 31.0 14.3 79 665-744 134-213 (301)
377 PF09744 Jnk-SapK_ap_N: JNK_SA 57.4 2.2E+02 0.0047 28.7 17.0 68 713-796 83-150 (158)
378 PF13166 AAA_13: AAA domain 57.4 4.5E+02 0.0097 32.3 21.2 30 773-802 427-456 (712)
379 KOG2445 Nuclear pore complex c 57.3 1.9E+02 0.0042 32.1 13.0 119 108-247 16-138 (361)
380 PF10805 DUF2730: Protein of u 57.1 39 0.00083 31.5 6.9 33 716-749 69-101 (106)
381 KOG0163 Myosin class VI heavy 57.1 2.8E+02 0.0061 34.3 15.2 49 628-676 823-871 (1259)
382 PF09789 DUF2353: Uncharacteri 56.9 3.2E+02 0.007 30.6 19.4 66 661-726 74-140 (319)
383 KOG1407 WD40 repeat protein [F 56.9 25 0.00055 37.9 6.2 81 106-204 21-103 (313)
384 PRK12705 hypothetical protein; 56.8 4.1E+02 0.0089 31.7 22.0 31 770-802 142-172 (508)
385 PF15188 CCDC-167: Coiled-coil 56.7 35 0.00077 30.7 6.2 61 718-798 4-64 (85)
386 PF07851 TMPIT: TMPIT-like pro 56.5 68 0.0015 35.9 9.8 52 620-672 8-59 (330)
387 PF13747 DUF4164: Domain of un 56.5 98 0.0021 28.0 9.1 6 690-695 70-75 (89)
388 COG1283 NptA Na+/phosphate sym 56.1 4.3E+02 0.0093 31.7 17.6 43 703-746 387-429 (533)
389 PF04762 IKI3: IKI3 family; I 56.1 1.5E+02 0.0033 38.0 14.0 160 52-249 211-375 (928)
390 PF11180 DUF2968: Protein of u 56.0 1.4E+02 0.003 30.9 11.0 37 715-752 150-186 (192)
391 KOG0650 WD40 repeat nucleolar 55.9 59 0.0013 38.8 9.4 69 106-192 401-470 (733)
392 COG4913 Uncharacterized protei 55.7 80 0.0017 38.6 10.5 124 659-805 616-740 (1104)
393 KOG2055 WD40 repeat protein [G 55.2 3.1E+02 0.0068 32.0 14.7 128 108-272 306-438 (514)
394 PF14712 Snapin_Pallidin: Snap 55.2 1.5E+02 0.0033 26.3 12.1 22 678-699 69-90 (92)
395 PF02239 Cytochrom_D1: Cytochr 55.2 2.8E+02 0.006 31.5 14.8 82 104-195 76-159 (369)
396 cd07605 I-BAR_IMD Inverse (I)- 55.2 2.7E+02 0.0058 29.6 13.6 69 682-750 70-142 (223)
397 KOG4677 Golgi integral membran 55.2 2.7E+02 0.0059 32.4 14.1 38 767-804 320-357 (554)
398 KOG0645 WD40 repeat protein [G 55.1 3.2E+02 0.007 30.0 15.0 76 106-196 62-137 (312)
399 PF07111 HCR: Alpha helical co 54.9 4.9E+02 0.011 32.1 20.9 105 640-745 164-274 (739)
400 PF08614 ATG16: Autophagy prot 54.8 78 0.0017 32.5 9.4 66 634-699 84-149 (194)
401 PF12777 MT: Microtubule-bindi 54.8 10 0.00022 42.6 3.2 87 645-732 221-310 (344)
402 TIGR03319 YmdA_YtgF conserved 54.7 3.4E+02 0.0074 32.4 15.9 28 767-794 252-286 (514)
403 PRK09841 cryptic autophosphory 54.6 1.3E+02 0.0028 37.4 13.0 15 622-636 243-257 (726)
404 COG4942 Membrane-bound metallo 54.6 1.9E+02 0.0042 33.4 13.1 69 656-725 175-244 (420)
405 PF05266 DUF724: Protein of un 54.6 2.1E+02 0.0046 29.6 12.4 91 643-745 91-184 (190)
406 KOG4328 WD40 protein [Function 54.5 83 0.0018 36.4 10.1 78 161-249 232-316 (498)
407 PF09403 FadA: Adhesion protei 54.5 2.1E+02 0.0046 27.7 11.9 59 640-701 22-80 (126)
408 KOG1332 Vesicle coat complex C 54.5 93 0.002 33.5 9.8 120 106-252 12-133 (299)
409 PRK00888 ftsB cell division pr 54.4 41 0.00088 31.3 6.6 41 658-698 33-73 (105)
410 KOG0305 Anaphase promoting com 54.2 35 0.00077 40.1 7.4 36 160-195 340-377 (484)
411 PF00435 Spectrin: Spectrin re 54.2 1.4E+02 0.0029 25.9 9.9 55 642-696 38-96 (105)
412 KOG1937 Uncharacterized conser 54.0 4.2E+02 0.009 31.0 15.7 34 629-662 291-324 (521)
413 KOG2445 Nuclear pore complex c 53.9 3.6E+02 0.0077 30.1 19.6 117 50-195 23-145 (361)
414 cd07662 BAR_SNX6 The Bin/Amphi 53.9 1.9E+02 0.0041 30.6 12.0 58 631-700 113-170 (218)
415 PF04912 Dynamitin: Dynamitin 53.8 1.2E+02 0.0026 34.7 11.6 12 618-629 248-259 (388)
416 PRK10698 phage shock protein P 53.8 2.9E+02 0.0064 29.1 16.5 36 663-698 110-145 (222)
417 PF02601 Exonuc_VII_L: Exonucl 53.5 3.4E+02 0.0074 29.8 15.1 15 732-746 259-273 (319)
418 KOG0283 WD40 repeat-containing 53.4 66 0.0014 39.4 9.6 133 49-193 377-531 (712)
419 KOG4360 Uncharacterized coiled 53.4 2.9E+02 0.0062 32.7 14.1 80 620-700 199-281 (596)
420 PRK12704 phosphodiesterase; Pr 53.2 2.7E+02 0.006 33.2 14.8 28 767-794 258-292 (520)
421 PF11945 WASH_WAHD: WAHD domai 53.2 68 0.0015 35.5 9.1 26 618-648 17-42 (297)
422 PF00804 Syntaxin: Syntaxin; 53.1 1.3E+02 0.0029 26.5 9.7 69 716-801 4-73 (103)
423 PF12795 MscS_porin: Mechanose 53.1 3E+02 0.0066 29.1 16.1 26 765-790 145-170 (240)
424 KOG1963 WD40 repeat protein [G 53.0 1.5E+02 0.0032 36.8 12.5 36 102-137 289-325 (792)
425 KOG0303 Actin-binding protein 52.7 87 0.0019 35.7 9.7 89 94-196 73-164 (472)
426 KOG1008 Uncharacterized conser 52.7 8.3 0.00018 45.9 2.1 120 52-196 156-277 (783)
427 KOG0962 DNA repair protein RAD 52.6 7E+02 0.015 33.1 20.1 121 660-797 210-331 (1294)
428 KOG0239 Kinesin (KAR3 subfamil 52.6 2.9E+02 0.0062 34.2 15.1 84 658-746 181-267 (670)
429 KOG4497 Uncharacterized conser 52.4 53 0.0012 36.6 7.9 87 24-136 343-433 (447)
430 cd07663 BAR_SNX5 The Bin/Amphi 52.4 3.1E+02 0.0068 29.0 14.2 82 627-735 110-191 (218)
431 KOG1036 Mitotic spindle checkp 52.3 2.2E+02 0.0047 31.6 12.4 117 61-195 145-263 (323)
432 PF15456 Uds1: Up-regulated Du 52.0 2.3E+02 0.0049 27.3 11.4 19 728-746 89-107 (124)
433 PF00015 MCPsignal: Methyl-acc 51.9 2.3E+02 0.0049 28.6 12.4 34 617-654 76-109 (213)
434 KOG0295 WD40 repeat-containing 51.9 1.4E+02 0.003 33.8 11.1 33 162-195 333-365 (406)
435 TIGR01010 BexC_CtrB_KpsE polys 51.9 3.9E+02 0.0084 30.0 18.4 71 629-701 156-235 (362)
436 PRK10476 multidrug resistance 51.7 3.6E+02 0.0078 30.0 14.9 17 729-745 161-177 (346)
437 KOG0277 Peroxisomal targeting 51.7 92 0.002 33.7 9.3 110 116-256 28-138 (311)
438 PF06156 DUF972: Protein of un 51.5 98 0.0021 29.0 8.6 38 641-678 4-41 (107)
439 PRK00409 recombination and DNA 51.4 4E+02 0.0086 33.6 16.4 56 629-684 500-555 (782)
440 TIGR03017 EpsF chain length de 51.3 4.3E+02 0.0094 30.3 19.0 50 624-673 149-199 (444)
441 KOG0294 WD40 repeat-containing 51.0 2.6E+02 0.0057 31.2 12.8 33 96-131 121-154 (362)
442 KOG0976 Rho/Rac1-interacting s 51.0 6E+02 0.013 31.9 18.3 27 640-666 108-134 (1265)
443 KOG0273 Beta-transducin family 51.0 1.5E+02 0.0032 34.6 11.4 71 106-194 453-523 (524)
444 PF07851 TMPIT: TMPIT-like pro 51.0 2.1E+02 0.0045 32.2 12.4 27 710-740 62-88 (330)
445 KOG3850 Predicted membrane pro 50.9 2.9E+02 0.0064 31.5 13.3 31 632-662 268-298 (455)
446 KOG3630 Nuclear pore complex, 50.9 68 0.0015 41.1 9.3 211 23-262 17-237 (1405)
447 PHA03247 large tegument protei 50.9 95 0.0021 43.2 11.1 110 636-745 955-1084(3151)
448 PF00901 Orbi_VP5: Orbivirus o 50.5 1E+02 0.0023 36.1 10.2 90 703-807 75-177 (508)
449 KOG0282 mRNA splicing factor [ 50.4 33 0.0007 39.8 6.2 68 109-192 436-503 (503)
450 KOG0972 Huntingtin interacting 50.3 3.9E+02 0.0084 29.5 15.7 31 772-802 337-367 (384)
451 PF12761 End3: Actin cytoskele 50.3 1.9E+02 0.0042 30.0 11.1 51 695-747 144-194 (195)
452 PF10224 DUF2205: Predicted co 50.3 1.2E+02 0.0026 27.0 8.4 51 635-685 13-63 (80)
453 PF04053 Coatomer_WDAD: Coatom 50.2 79 0.0017 36.9 9.5 65 105-193 32-97 (443)
454 KOG2111 Uncharacterized conser 50.2 4.1E+02 0.0089 29.7 16.3 170 54-250 59-253 (346)
455 COG1283 NptA Na+/phosphate sym 50.2 3.3E+02 0.0072 32.6 14.5 82 641-726 369-452 (533)
456 COG0497 RecN ATPase involved i 50.2 1.7E+02 0.0038 35.1 12.3 62 688-749 298-364 (557)
457 KOG0267 Microtubule severing p 50.1 66 0.0014 39.2 8.8 69 108-195 157-227 (825)
458 KOG0973 Histone transcription 49.9 65 0.0014 40.6 9.0 82 105-195 69-160 (942)
459 KOG0982 Centrosomal protein Nu 49.8 4.7E+02 0.01 30.3 17.3 19 680-698 275-293 (502)
460 COG1570 XseA Exonuclease VII, 49.8 4.4E+02 0.0095 30.8 15.1 62 631-698 283-346 (440)
461 PF07028 DUF1319: Protein of u 49.8 2.3E+02 0.0051 27.3 10.8 61 677-741 57-117 (126)
462 PF05600 DUF773: Protein of un 49.7 1.2E+02 0.0027 36.0 11.1 82 618-700 406-487 (507)
463 KOG1899 LAR transmembrane tyro 49.4 5.2E+02 0.011 31.5 15.5 32 771-802 275-306 (861)
464 PF00804 Syntaxin: Syntaxin; 49.3 88 0.0019 27.7 7.9 32 713-744 39-73 (103)
465 PF13166 AAA_13: AAA domain 49.2 5E+02 0.011 31.9 16.9 25 674-698 323-347 (712)
466 KOG0319 WD40-repeat-containing 49.2 83 0.0018 38.4 9.4 113 107-253 107-221 (775)
467 KOG2314 Translation initiation 49.1 2.5E+02 0.0054 33.6 12.9 93 107-201 348-485 (698)
468 PF06548 Kinesin-related: Kine 49.0 5E+02 0.011 30.4 16.0 71 646-719 310-388 (488)
469 PF13514 AAA_27: AAA domain 49.0 7.5E+02 0.016 32.4 22.3 135 664-803 344-485 (1111)
470 COG3937 Uncharacterized conser 48.8 81 0.0018 29.5 7.3 24 678-701 48-72 (108)
471 PF12894 Apc4_WD40: Anaphase-p 48.7 47 0.001 26.4 5.1 31 104-134 10-41 (47)
472 KOG4398 Predicted coiled-coil 48.7 1.2E+02 0.0026 33.0 9.5 41 659-702 40-80 (359)
473 KOG0276 Vesicle coat complex C 48.7 3.1E+02 0.0067 33.3 13.6 49 147-195 165-216 (794)
474 PF10779 XhlA: Haemolysin XhlA 48.6 76 0.0016 27.3 6.9 9 690-698 37-45 (71)
475 TIGR02132 phaR_Bmeg polyhydrox 48.3 1.4E+02 0.0031 30.5 9.5 22 677-698 111-132 (189)
476 PF05384 DegS: Sensor protein 48.3 3E+02 0.0066 27.7 12.5 46 624-673 10-55 (159)
477 TIGR00293 prefoldin, archaeal 48.2 1.9E+02 0.004 27.3 10.3 40 708-748 82-121 (126)
478 PF10205 KLRAQ: Predicted coil 48.2 2.3E+02 0.0051 26.4 11.5 56 635-693 16-71 (102)
479 KOG3647 Predicted coiled-coil 48.1 2.1E+02 0.0045 31.1 11.2 48 639-686 113-160 (338)
480 PF11180 DUF2968: Protein of u 48.1 2.4E+02 0.0051 29.3 11.2 67 635-701 116-182 (192)
481 PF09731 Mitofilin: Mitochondr 48.1 5.1E+02 0.011 31.2 16.3 12 772-783 387-398 (582)
482 KOG2315 Predicted translation 47.9 34 0.00074 40.3 5.9 67 110-195 316-391 (566)
483 KOG0271 Notchless-like WD40 re 47.9 1.6E+02 0.0034 33.7 10.7 118 122-249 83-231 (480)
484 KOG2412 Nuclear-export-signal 47.9 5.6E+02 0.012 30.7 17.9 105 632-747 169-278 (591)
485 PF04380 BMFP: Membrane fusoge 47.8 1.2E+02 0.0027 26.7 8.2 69 620-699 7-76 (79)
486 PF06008 Laminin_I: Laminin Do 47.7 3.9E+02 0.0084 28.7 17.7 57 639-695 81-142 (264)
487 PRK04406 hypothetical protein; 47.7 79 0.0017 27.7 6.9 61 724-806 1-61 (75)
488 KOG0018 Structural maintenance 47.6 3.5E+02 0.0075 34.9 14.6 146 641-808 306-461 (1141)
489 smart00150 SPEC Spectrin repea 47.6 1.7E+02 0.0038 25.1 9.4 56 643-698 36-95 (101)
490 KOG4593 Mitotic checkpoint pro 47.5 6.3E+02 0.014 31.1 18.9 36 713-749 191-226 (716)
491 PF00957 Synaptobrevin: Synapt 47.4 1.8E+02 0.004 25.7 9.5 53 642-694 7-59 (89)
492 TIGR00998 8a0101 efflux pump m 47.3 4E+02 0.0088 29.1 14.3 14 728-741 154-167 (334)
493 COG3879 Uncharacterized protei 47.3 67 0.0015 34.4 7.6 51 649-702 54-104 (247)
494 KOG0321 WD40 repeat-containing 47.3 1.3E+02 0.0027 36.4 10.4 116 48-199 280-396 (720)
495 KOG0296 Angio-associated migra 47.2 3.9E+02 0.0084 30.4 13.5 132 53-208 203-378 (399)
496 PF04849 HAP1_N: HAP1 N-termin 47.2 2.9E+02 0.0063 30.7 12.6 81 621-701 218-304 (306)
497 KOG1354 Serine/threonine prote 47.1 59 0.0013 36.5 7.3 91 108-201 28-123 (433)
498 KOG4001 Axonemal dynein light 47.1 3.6E+02 0.0078 28.2 12.7 97 623-737 156-252 (259)
499 COG1322 Predicted nuclease of 47.0 5.4E+02 0.012 30.2 17.4 171 618-807 17-193 (448)
500 KOG2891 Surface glycoprotein [ 46.9 1.4E+02 0.003 32.4 9.8 123 651-794 321-444 (445)
No 1
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-109 Score=894.40 Aligned_cols=718 Identities=23% Similarity=0.216 Sum_probs=585.6
Q ss_pred CccccCCCCCCCCCCCCCCCccccccccCCCCCcccccccccCCCCCCCC-CCceEEEEeCCceEEEEeCCCcEEEEEee
Q 003591 1 MRFNFDLSEPSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNG-APKNLVAWDGASRLYYWDQNAQCLHRISV 79 (808)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~L~~hpiF~~~~~~~~~~~~~~~-~~rnll~~~~~~~l~~w~~~~~~l~~~~l 79 (808)
|.|||++.++.+++|++||||+.++|+.+++||.|...+. +++.+.+.+ .+||+++|+ |+++|+||+.++|+++.+|
T Consensus 1 m~~~~~~~~d~~~~~~~p~~~~~lr~Vl~~~~ptea~~p~-s~~lP~V~~l~trN~~~~~-gD~lf~Wd~~ds~Llv~~l 78 (741)
T KOG4460|consen 1 MAAAEGPVGDGELWQWLPNHFLRLREVLKNQSPTEAEKPA-SSSLPSVPPLLTRNVVFGL-GDELFLWDGEDSSLLVVRL 78 (741)
T ss_pred CCcccCCCCcchhhhcCCCccccHhHHhhhcCchhhcccc-cCCCCCCccccccchhccc-CCEEEEEecCcceEEEEEe
Confidence 9999999999999999999999999999999999987754 445565532 599999999 6699999999999999999
Q ss_pred ccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCC----CC-CceeeEEEEecc
Q 003591 80 RLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSS----DN-KTIICRTVSVGS 154 (808)
Q Consensus 80 R~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~----d~-~~~~c~t~~v~~ 154 (808)
|. .+++.++.+...|++|.|+.++.|+|.+|.+|++|.++||+|.+||+||+||+|||+. |+ ..+.||++.||.
T Consensus 79 R~-~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~ 157 (741)
T KOG4460|consen 79 RG-PSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE 157 (741)
T ss_pred cc-CCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc
Confidence 97 3444455567899999999999999999999999999999999999999999999762 33 458899999997
Q ss_pred eeeeccCCccceeEEEEecCC--CCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCC
Q 003591 155 QIYFSSSNVIRTLQVSWHPYS--DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHL 232 (808)
Q Consensus 155 ~~~~~~~~~~~I~qv~WHP~s--d~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~ 232 (808)
+ ||++++.+.++||+|||.| |+||+||++||+||+||++.+.+ .++.+..+||+....+++ +||
T Consensus 158 ~-~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te-----lylqpgepgRS~tn~Si~----sFG---- 223 (741)
T KOG4460|consen 158 R-FFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE-----LYLQPGEPGRSPTNVSIL----SFG---- 223 (741)
T ss_pred e-eeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch-----hhccCCCcCCCCccceee----ccC----
Confidence 5 6788899999999999999 99999999999999999988554 467776778876654443 676
Q ss_pred CCceEEEEEecCccEEEEcccCCCCCCcChhHHHHHHhhhhhhhhcccchhhhhchHHHHHHHHhhcccccccccCCCCC
Q 003591 233 WDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDP 312 (808)
Q Consensus 233 w~~~tLyiL~~~GdIYalcP~lP~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~ns~~q~~Wl~~~~~~~~~~~~~~~~~ 312 (808)
+|.||.+||..|++..+.++.+- ++...++. +.+.....|+....+|++..|..+..+++ +++.
T Consensus 224 -----------e~~~~~l~~~~a~~~V~~~Esv~---Nd~~~l~~-S~ktL~~~nSs~k~E~iE~p~~~L~EnG~-~~NI 287 (741)
T KOG4460|consen 224 -----------EEESLVLNKGRAYTAVLGEEAVA---NDFGPLAA-SPKTLFGQNSSGKDEVVEYPLYILYENGE-TFNI 287 (741)
T ss_pred -----------CcceeeeccCcccccccCchhhc---cCcccccc-CccceeeecccccceeEecceeeeeccCc-ceeE
Confidence 59999999999999999888763 44333333 55556678888889999999999888765 4444
Q ss_pred CccccccCCccCCcccccCCeeccCCCCCCchhhhccccccCcceeEEEeecCCCcEEEEEecCceEEEEeecCCCCccc
Q 003591 313 PALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADEIQPVW 392 (808)
Q Consensus 313 ~~v~~~p~~~~~~~~~lQGPf~~~~~~~~d~y~~~~~~~~~~~a~~il~~~~~~~~il~ia~~~G~v~i~l~~~ev~~~W 392 (808)
-.+.++|+.. ..+||||++|.| .++|+|+ .++|.++|++. .++||||||++|++++|++.++.++.|
T Consensus 288 yi~~~~~~~~---~~~LQGPl~~~p-~aeDnyg--------~~~CaL~~lpS-~p~ilViA~S~G~L~h~~L~e~e~~~~ 354 (741)
T KOG4460|consen 288 YISLLHSPGN---IGKLQGPLPMHP-AAEDNYG--------YDACALLCLPS-VPNILVIATSSGMLYHCVLLEGEEEDD 354 (741)
T ss_pred EEEEccCcch---hhhhcCCccCCc-ccccccc--------hhhheeEeecC-CCCeEEEEecCCceeeeeeeccccccc
Confidence 4455566654 689999999996 7788998 68999888885 999999999999999999999999999
Q ss_pred ccCCCCCccccccccccccceeecc-ccCCCCccccCCCCCccccCCCCCCccchhhhcccCCCCCCCCCeeEEEeCCCC
Q 003591 393 TVNIPPRLRVDSQDRIHGLAMICEP-ISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLM 471 (808)
Q Consensus 393 ~~~~~~~l~v~~~~~~~~~~~i~E~-i~~el~~~~~~~~~~~~~~~~~~p~Ll~l~~vdl~~p~~~~~~~~~~l~~D~~~ 471 (808)
.+++..+....++.++.+++||||+ +++++. .. -..|.+...+|+|.+++|+.+
T Consensus 355 hS~N~s~ds~~~~~p~~yV~~~~E~~i~l~l~-~~------------------------~~~p~d~~~~cP~~L~Rd~~~ 409 (741)
T KOG4460|consen 355 HSSNKSWDSRIDLIPSLYVFECVELELALKLA-SG------------------------EDDPFDSDFSCPVKLHRDPKC 409 (741)
T ss_pred cccccchhhhhhcchhhHHHHHHhhhhhhhhc-cC------------------------CCCCccccCCCCchhhhcccc
Confidence 9988876654477888889999998 554431 11 123555678999999999999
Q ss_pred CceEEEEEcCCceEEEccccccc----cc-cCCCCC--cCC---CCceeEEEecCCCCCCCCCCeeeEEEeecCCCceEE
Q 003591 472 QERIYIVHDGGIDSVVLHFLPFT----SQ-TRGKDE--TNR---SPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSWI 541 (808)
Q Consensus 472 ~~r~~v~H~~GVh~VsL~Wv~~L----e~-e~g~d~--~l~---~~~v~~ll~t~~~~~~~~~pl~G~~~i~D~~g~~lL 541 (808)
+-||||+|++|||+|.++|++.+ +. +.++|- .+. .+++++++||....+...+||.||+.+.|++|+ ++
T Consensus 410 ~Lry~~~heaGvh~v~~S~i~El~~~L~s~e~D~d~L~~l~~~S~~~~e~iLcTk~~~c~~V~pi~Gf~~L~d~~G~-~I 488 (741)
T KOG4460|consen 410 PLRYHCTHEAGVHSVGLSWIHELHKFLGSDEEDKDSLQELSTESKCFVEHILCTKPLPCRQVAPIRGFWILPDILGP-TI 488 (741)
T ss_pred cccchhhhccceEeehhhhHHHHHHHhcCCCcchHHHHhhhhhhhhhhHHHhcCCCCcccccccccceeeccccCCc-eE
Confidence 99999999999999999999955 22 333331 122 345999999998888788999999999999988 69
Q ss_pred EEEcCCCcEEEEEeccccc-cC-CccccccccccccCCCcCCCCchhhcccccCCCcccccCCCCCCCccccCcccchhh
Q 003591 542 VGVTSTQECVVIEMKTWNL-LL-PVQIDSEKKSVDLGAKKERDTPDIISKELLSGPKVILLPQASPNLRSVAADSIEGRS 619 (808)
Q Consensus 542 l~~t~~~~~v~l~l~~~~~-~~-P~~~~~~~~~~s~~~~~~~~~~~~~~~~ll~~p~~~~~P~~~~~l~s~~~~~~e~~~ 619 (808)
||+.++|+||+.++..... .. |..+.-.+ .+-.+++...++.+.++.+|+....|++-+.. ...|...|+++
T Consensus 489 V~vLsSGecI~w~Ll~~~h~~~~p~~~~~~d-----~Ev~eQE~~~~f~k~i~s~lqrsva~paL~~~-~SsP~~~E~~~ 562 (741)
T KOG4460|consen 489 VCILSSGECIIWPLLSTVHPASPPLLCTRED-----VEVAEQETPDSFEKHIRSILQRSVANPALLKA-SSAPPPEECLQ 562 (741)
T ss_pred EEEecCCcEEEEeeeccccccCCcccCchhH-----hHHHhhhcCCcHHHHHHHhhhhhcCChhcccc-ccCCCcHHHHH
Confidence 9999999999987754222 11 21111011 11123333444556666666533333332222 33355889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
+|.+|+++|||+|+.++|+|++|++||+..|+.++++|+.+|++++|++++|++++++|++|||+|+++|+.|++|+++|
T Consensus 563 lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 563 LLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCccc-CcHHHHHHHHHH
Q 003591 700 RNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNY-VQDAQISQLRSL 778 (808)
Q Consensus 700 ~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~l~~~ 778 (808)
+....++.|+|++|||.|++||+.+. +++++|.+.||+++++.+++++- ++.+ +..-..+-| ++++|+++||+.
T Consensus 643 ~~~~~~~lp~l~~AErdFk~Elq~~~-~~~~~L~~~iET~~~~~~KQ~~H-~~~v---~~al~K~~Y~l~~~Q~~~iqsi 717 (741)
T KOG4460|consen 643 LHSFHSELPVLSDAERDFKKELQLIP-DQLRHLGNAIETVTMKKDKQQQH-MEKV---LSALPKPTYILSAYQRKCIQSI 717 (741)
T ss_pred HhcccccCCcchhHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhhccCCcccccHHHHHHHHHH
Confidence 88777999999999999999999887 59999999999999999994433 3321 111112223 679999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHh
Q 003591 779 MEKLSLVNSENLKKVKLVESALK 801 (808)
Q Consensus 779 L~~~~~~i~e~~~k~~~~~~~~~ 801 (808)
|++++++|.||.||||+|++.++
T Consensus 718 L~~L~~~i~~~~k~VK~i~~~v~ 740 (741)
T KOG4460|consen 718 LKELGEHIREMVKQVKDIRNHVN 740 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999886
No 2
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=100.00 E-value=1.2e-105 Score=945.56 Aligned_cols=658 Identities=27% Similarity=0.364 Sum_probs=516.0
Q ss_pred cccc-cCCCCCcccccccccCCCCC--CCCCCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeec
Q 003591 24 VEWV-PLQKHPVFSAPDAVRNGGGK--FNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRA 100 (808)
Q Consensus 24 ~~w~-~L~~hpiF~~~~~~~~~~~~--~~~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~ 100 (808)
-+|+ .|++|+||++++.++...+. .....|||++|+ |++||+||++++|++++|||.+..++++.....+|++++.
T Consensus 2 ~~~~~~L~~h~lF~~l~~~l~~~~~~~~~~~~rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~ 80 (717)
T PF10168_consen 2 ETWRLWLPNHPLFKRLREGLSSSSKGSSERHTRNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPS 80 (717)
T ss_pred cchhhhCCCChhHHHhhccCCCCCcccccccceeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecC
Confidence 4798 99999999999886543322 123579999999 8999999999999999999999866543322345666665
Q ss_pred CCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCC---CC--CCceeeEEEEecceeeeccCCccceeEEEEecCC
Q 003591 101 DVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCS---SD--NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS 175 (808)
Q Consensus 101 ~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~---~d--~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s 175 (808)
+++ .|+|++|++||+|++|||+|+++|+||+||++|++ ++ ...+.||+++||+ .||.+++++.|+||+|||+|
T Consensus 81 ~~~-~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 81 NPP-LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-RFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred CCC-ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEech-hhccCCCCceEEEEEEcCCC
Confidence 554 69999999999999999999999999999999864 22 2568999999998 56788999999999999998
Q ss_pred --CCEEEEEecCCeEEEEeccCCCCCCceEEEeccCC-------CCCCCC-CCCcceEEEEecCC-------------CC
Q 003591 176 --DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVE-------PGRYRN-AASICPVDFSFGGD-------------HL 232 (808)
Q Consensus 176 --d~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~-------~g~~~~-~~~~~~vsf~Fg~~-------------~~ 232 (808)
|+|||||||||+||+||+. +...|.|++.+.+.. .|+++. ..|..||+|||||. ..
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~-~~~~p~~v~~~~~~~~~~~~~~~~~~~~~slge~AV~FDfgP~~~~~~~~~~~~~~~~ 237 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDIS-DPQHPWQVLSLSPGEKSSSLSSRGRSFLASLGETAVDFDFGPLDTSPKTLTGQKSKQE 237 (717)
T ss_pred CCCCeEEEEecCCEEEEEecC-CCCCCeEEEEcccCcccccccCCCccccccchheeeecccccccccccccccccCCCC
Confidence 8999999999999999996 577899999987421 122232 24678999999982 24
Q ss_pred CCceEEEEEecCccEEEEcccCCCCCCcChhHHHHHHhhhhhhhhcccchhhhhchHHHHHHHHhhcccccccccCCCCC
Q 003591 233 WDRFSVFVLFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFPEVAQETIDEGDP 312 (808)
Q Consensus 233 w~~~tLyiL~~~GdIYalcP~lP~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~ns~~q~~Wl~~~~~~~~~~~~~~~~~ 312 (808)
|-.|+||||++|||||.+|-.+-- .+
T Consensus 238 ~~~~p~~vL~~ng~v~~~~~~l~~-----------------------------~~------------------------- 263 (717)
T PF10168_consen 238 KIEWPIFVLRENGDVYLLYTSLQD-----------------------------EN------------------------- 263 (717)
T ss_pred ceeccEEEEecCCCEEEEEEeccc-----------------------------Cc-------------------------
Confidence 568999999999999999984200 00
Q ss_pred CccccccCCccCCcccccCCeeccCCCCCCchhhhccccccCcceeEEEeecCCCcEEEEEecCceEEEEeecCC--CCc
Q 003591 313 PALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFLYNLVSKDSIVVTSWSGGQLQIDALADE--IQP 390 (808)
Q Consensus 313 ~~v~~~p~~~~~~~~~lQGPf~~~~~~~~d~y~~~~~~~~~~~a~~il~~~~~~~~il~ia~~~G~v~i~l~~~e--v~~ 390 (808)
+..+++||||+|+| +++|||+ .+||+|+|++. .++|||||+++|+||+|+..+. .+.
T Consensus 264 -----------~~~~~~~gpl~~~p-~~~dnyg--------~d~c~i~~l~~-~p~~~via~~~G~l~h~i~l~~~~~~~ 322 (717)
T PF10168_consen 264 -----------SNLPKLQGPLPMQP-PADDNYG--------LDACSILCLPS-LPPVLVIATSNGKLYHCILLEAEEDED 322 (717)
T ss_pred -----------cccceecCceecCC-CCcccCC--------CceeeEEEecC-CCCEEEEEecCCeEEEEEEeccccccc
Confidence 24679999999996 6789999 69999999997 7799999999999998886544 222
Q ss_pred ccccCCCCCccccccccccccceeeccccCCCCccccCCCCCccccCCCCCCccchhhhcccCCCCCCCCCeeEEEeCCC
Q 003591 391 VWTVNIPPRLRVDSQDRIHGLAMICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPL 470 (808)
Q Consensus 391 ~W~~~~~~~l~v~~~~~~~~~~~i~E~i~~el~~~~~~~~~~~~~~~~~~p~Ll~l~~vdl~~p~~~~~~~~~~l~~D~~ 470 (808)
.|....... ...-.+..||+|||++||++. +++-+ ..+.+..++|+|+|++||.
T Consensus 323 ~~~~~~~~~-----~~~~~~~L~V~E~VeLel~l~--------------------~~~~~-~~~~~~~~~cpI~L~~Dp~ 376 (717)
T PF10168_consen 323 DSFNESDDQ-----SLEEPPSLYVLETVELELGLS--------------------LASED-EESLELSYSCPIRLHRDPL 376 (717)
T ss_pred ccccccccc-----cccCCcceEEEEEEeeccccc--------------------cCCCC-CccccCCCCcceEEEecCC
Confidence 121111111 111134567899999997422 22222 1122456789999999999
Q ss_pred CCceEEEEEcCCceEEEccccccccc-----cCCCCC-----cCCCCceeEEEecCCCCCCCCCCeeeEEEeecCCCceE
Q 003591 471 MQERIYIVHDGGIDSVVLHFLPFTSQ-----TRGKDE-----TNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSW 540 (808)
Q Consensus 471 ~~~r~~v~H~~GVh~VsL~Wv~~Le~-----e~g~d~-----~l~~~~v~~ll~t~~~~~~~~~pl~G~~~i~D~~g~~l 540 (808)
+++||||+|++|||+|+|+|++.|+. ++++|. ..++|.|++++||++..++.++||.||++++|+ .||.
T Consensus 377 ~~~ryy~~H~~GvH~V~L~wl~~L~~fl~~~~~~~dsl~~l~~~~~~~Ve~llcT~~~~~~~~~PV~G~~il~D~-lg~s 455 (717)
T PF10168_consen 377 NPDRYYCYHNAGVHSVTLPWLSALQEFLESDEEDKDSLQELASESPCIVEYLLCTKPLSSSAPNPVVGFAILSDV-LGYS 455 (717)
T ss_pred CCceEEEEecCccEEEEeccHHHHHHHhcccCCccchhhhhcccCCcceEEEeccCCCCCCCCCCceEEEEecCC-CCce
Confidence 99999999999999999999997742 334332 223567999999999887778999999999999 5555
Q ss_pred EEEEcCCCcEEEEEeccc-ccc-CCccccccccccc---------cCCCcCCCCchhhcccccCCCc--ccccCCCCCCC
Q 003591 541 IVGVTSTQECVVIEMKTW-NLL-LPVQIDSEKKSVD---------LGAKKERDTPDIISKELLSGPK--VILLPQASPNL 607 (808)
Q Consensus 541 Ll~~t~~~~~v~l~l~~~-~~~-~P~~~~~~~~~~s---------~~~~~~~~~~~~~~~~ll~~p~--~~~~P~~~~~l 607 (808)
||++|++|+|++++|... +.. .|..........+ .+.+|+.+++ .+|..+. |++++.+ .
T Consensus 456 ll~lts~~e~v~l~L~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~sF~~~Ik-----~lL~r~~~qPill~s~---~ 527 (717)
T PF10168_consen 456 LLALTSSGECVVLPLVIDLRLLSPPLLCEPSDSDSTESPLKPLAESPPSFEKHIK-----SLLQRSSSQPILLKSS---D 527 (717)
T ss_pred EEEEccCCcEEEEEcccccccCCCchhhcCCCCCcccccccccccccchHHHHHH-----HHhcCCCCCCeecCCC---c
Confidence 999999999999998643 222 2322211111100 1134444433 3343332 3332222 2
Q ss_pred ccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 608 RSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQ 687 (808)
Q Consensus 608 ~s~~~~~~e~~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~ 687 (808)
+...+...|++++|++|+++|||+|+.++++|++||++|+++|+.++++|+++|.++++++++|++++++|++||++|.+
T Consensus 528 k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 528 KSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccC
Q 003591 688 QHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYV 767 (808)
Q Consensus 688 ~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (808)
+|+.|++|++++.+....+.|+||+|||+|++||++|++ ++++|+++|+++|+|++++..+..+ +....+....+
T Consensus 608 ~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~-~l~~l~~si~~lk~k~~~Q~~~i~~----~~~~~~~s~~L 682 (717)
T PF10168_consen 608 KQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKD-QLQDLKASIEQLKKKLDYQQRQIES----QKSPKKKSIVL 682 (717)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc----cccccCCCccC
Confidence 999999999995443347899999999999999999996 8999999999999999997665431 12222234459
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 768 QDAQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 768 ~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
+++|++.|+++|+++++.|++++|+||.|...+
T Consensus 683 ~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 683 SESQKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998754
No 3
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00077 Score=76.26 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=110.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc--CCCCCCCCCCHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRN--LPGAHKKPLSGAEHA 716 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~--l~~~~~~~LS~aEk~ 716 (808)
-.+|.+|++.+-++.+....+|+.+.+++..++..+..-..||++++.|+.+|..|+=+ +.. ..+.++.+|...|-+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~ 415 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEE 415 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHH
Confidence 56799999999999999999999999999999988888899999999999999999988 333 455788899999999
Q ss_pred HHHHHhhhhhhhHH---HHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHH
Q 003591 717 LKAELDHFEGVELD---ALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKV 793 (808)
Q Consensus 717 ~~~El~~~~~~~l~---~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~ 793 (808)
+.+-|+.|-. ++. .++.||..+..+++-+.-+.+.. ....-.-.+-.++++.|+.....++..+.=+++..
T Consensus 416 Lr~Kldtll~-~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~-----~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~ 489 (508)
T KOG3091|consen 416 LRAKLDTLLA-QLNAPNQLKARLDELYEILRMQNSQLKLQ-----ESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQ 489 (508)
T ss_pred HHHHHHHHHH-HhcChHHHHHHHHHHHHHHHhhcchhccc-----cceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999998885 553 57777777777766643221100 00000111334445566655555555555555555
Q ss_pred HHHHHHH
Q 003591 794 KLVESAL 800 (808)
Q Consensus 794 ~~~~~~~ 800 (808)
+++++.|
T Consensus 490 edi~~~l 496 (508)
T KOG3091|consen 490 EDIKHQL 496 (508)
T ss_pred HHHHHHH
Confidence 5554433
No 4
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=97.25 E-value=0.00048 Score=67.28 Aligned_cols=103 Identities=25% Similarity=0.406 Sum_probs=46.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc--CCCCCCCCCCHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRN--LPGAHKKPLSGAEHA 716 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~--l~~~~~~~LS~aEk~ 716 (808)
..+|.+|.+.++.++..+...|.++.++++.++..+.....||++++.+|.+|..|+=+ +.. +.+..+.+|+..|..
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 46799999999999999999999999999999988999999999999999999999977 333 344677889999999
Q ss_pred HHHHHhhhhhhhHH---HHHHHHHHHHHHH
Q 003591 717 LKAELDHFEGVELD---ALHSSIEALRARL 743 (808)
Q Consensus 717 ~~~El~~~~~~~l~---~L~~~ie~lk~r~ 743 (808)
+...|+.+.. ++. .+..+++++-+++
T Consensus 112 L~~~le~l~~-~l~~p~~~~~rl~El~a~l 140 (141)
T PF13874_consen 112 LRKRLEALEA-QLNAPAQLKGRLNELWAQL 140 (141)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHH-HHcCchhHHHHHHHHHHHh
Confidence 9999999885 664 3667777776654
No 5
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.011 Score=67.43 Aligned_cols=329 Identities=13% Similarity=0.093 Sum_probs=177.6
Q ss_pred cCCCCCCccchhhhcccCCCCCCCCCeeEEEeCCCCCceEEEEEcCCceEEEccccccccccCCCCCcCC----CC-cee
Q 003591 436 WLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSVVLHFLPFTSQTRGKDETNR----SP-SVH 510 (808)
Q Consensus 436 ~~~~~p~Ll~l~~vdl~~p~~~~~~~~~~l~~D~~~~~r~~v~H~~GVh~VsL~Wv~~Le~e~g~d~~l~----~~-~v~ 510 (808)
|.+.||+|++....||..+...+.+ .+.+.|..-+++.|..|.+|++.-+|.-+.+-+.-- +|..+. +| .|.
T Consensus 396 ~~~cP~~L~Rd~~~~Lry~~~heaG--vh~v~~S~i~El~~~L~s~e~D~d~L~~l~~~S~~~-~e~iLcTk~~~c~~V~ 472 (741)
T KOG4460|consen 396 DFSCPVKLHRDPKCPLRYHCTHEAG--VHSVGLSWIHELHKFLGSDEEDKDSLQELSTESKCF-VEHILCTKPLPCRQVA 472 (741)
T ss_pred cCCCCchhhhcccccccchhhhccc--eEeehhhhHHHHHHHhcCCCcchHHHHhhhhhhhhh-hHHHhcCCCCcccccc
Confidence 8999999999999999999887766 788889999999999999999998888555443211 232222 12 255
Q ss_pred EEEecCCCCCCCCCCeeeEEEeecC-CCceEEEEEcCCCcEEEEEeccccccCCccccccccccccCCCcCCCCchhhcc
Q 003591 511 PVLNTCQGETSSPSPLCGFVSLSDS-FGYSWIVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKERDTPDIISK 589 (808)
Q Consensus 511 ~ll~t~~~~~~~~~pl~G~~~i~D~-~g~~lLl~~t~~~~~v~l~l~~~~~~~P~~~~~~~~~~s~~~~~~~~~~~~~~~ 589 (808)
+++.-.+... +.|-+++.=- -|.....-+..+-.+ .-++..-.|+.. +.+.+-...+|+.++..++.+
T Consensus 473 pi~Gf~~L~d-----~~G~~IV~vLsSGecI~w~Ll~~~h~----~~~p~~~~~~d~--Ev~eQE~~~~f~k~i~s~lqr 541 (741)
T KOG4460|consen 473 PIRGFWILPD-----ILGPTIVCILSSGECIIWPLLSTVHP----ASPPLLCTREDV--EVAEQETPDSFEKHIRSILQR 541 (741)
T ss_pred cccceeeccc-----cCCceEEEEecCCcEEEEeeeccccc----cCCcccCchhHh--HHHhhhcCCcHHHHHHHhhhh
Confidence 5554333322 3442221111 222211111111111 111112223322 221111235667766555443
Q ss_pred cccCC---CcccccCCCCCCCccccCcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003591 590 ELLSG---PKVILLPQASPNLRSVAADSIEGRSTLH-QYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQ 665 (808)
Q Consensus 590 ~ll~~---p~~~~~P~~~~~l~s~~~~~~e~~~~L~-~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~ 665 (808)
.. .. |.-..-|++. ...++.-+- ..+|+ +++.--+.-+...+|.+.. |++..+.+-+++.+-.++...+.
T Consensus 542 sv-a~paL~~~~SsP~~~-E~~~lL~~a---~~vfrEqYi~~~dlV~~e~qrH~~~-l~~~k~~QlQ~l~~~~eer~~i~ 615 (741)
T KOG4460|consen 542 SV-ANPALLKASSAPPPE-ECLQLLSRA---TQVFREQYILKQDLVKEEIQRHVKL-LCDQKKKQLQDLSYCREERKSLR 615 (741)
T ss_pred hc-CChhccccccCCCcH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 11 1111111110 111222121 22444 4444444444555666655 66666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003591 666 NKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLR 744 (808)
Q Consensus 666 e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~ 744 (808)
++...+.+|-+..-+|-|.+..+.+.|+.|... |..+. ...+..+..=...-+|++++.. -++.++.+.+.-|.-+.
T Consensus 616 e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~-~AErdFk~Elq~~~~~~~~L~~-~iET~~~~~~KQ~~H~~ 693 (741)
T KOG4460|consen 616 EMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLS-DAERDFKKELQLIPDQLRHLGN-AIETVTMKKDKQQQHME 693 (741)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcch-hHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 777777777666677777777788888888888 66555 3456666555777889999885 77888888777555444
Q ss_pred HhhcCCCCCCCCccccccCcccCcHHHHHHHHHHH-HHhhhhhHHHHHHHH
Q 003591 745 RLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLM-EKLSLVNSENLKKVK 794 (808)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L-~~~~~~i~e~~~k~~ 794 (808)
...... +++.+....-.-.|+..|-..| ...+.++++ +|.|+
T Consensus 694 ~v~~al-------~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~-VK~i~ 736 (741)
T KOG4460|consen 694 KVLSAL-------PKPTYILSAYQRKCIQSILKELGEHIREMVKQ-VKDIR 736 (741)
T ss_pred HHHhhc-------cCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 444333 3344543332334444333333 333444433 44444
No 6
>PTZ00421 coronin; Provisional
Probab=96.46 E-value=0.26 Score=57.86 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=97.1
Q ss_pred CCceEEEEeCCceEEEEeCCCcEEEEEee-ccCCCCCCcccccCCceEeecCCCcceeeeEEEeCC-CCCEEEEEec-Ce
Q 003591 51 APKNLVAWDGASRLYYWDQNAQCLHRISV-RLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINR-NGSALLLIGS-DG 127 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~~~l~~~~l-R~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~-sG~~Lal~G~-~~ 127 (808)
...|+++++...-.+.|+...... ++.+ +.+.. ...+.+|. -. .-.|..+..|| +|++||..+. ..
T Consensus 31 d~~~~~~~n~~~~a~~w~~~gg~~-v~~~~~~G~~-------~~~~~~l~--GH-~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 31 DCSNTIACNDRFIAVPWQQLGSTA-VLKHTDYGKL-------ASNPPILL--GQ-EGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred CCCCcEeECCceEEEEEecCCceE-EeeccccccC-------CCCCceEe--CC-CCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 357889998777778898655432 2222 11110 11223344 22 35799999999 7888887765 57
Q ss_pred EEEEEeCCCCCCCC-CCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEe
Q 003591 128 LCVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYL 206 (808)
Q Consensus 128 v~Vv~LP~~~~~~d-~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l 206 (808)
|.|-.++....... ...+ ..+ ..+...|..+.|||.++..|+.-..|++|++||+... .+. ..+
T Consensus 100 IkIWdi~~~~~~~~~~~~l----~~L-------~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--~~~--~~l 164 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPI----VHL-------QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--KAV--EVI 164 (493)
T ss_pred EEEEecCCCccccccCcce----EEe-------cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--eEE--EEE
Confidence 77888875421100 0111 111 2234579999999998888888899999999999753 121 222
Q ss_pred ccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 207 QPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 207 ~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
.. -...+.+++|.+++ -.|+....||-|...-+
T Consensus 165 ~~---------h~~~V~sla~spdG----~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 165 KC---------HSDQITSLEWNLDG----SLLCTTSKDKKLNIIDP 197 (493)
T ss_pred cC---------CCCceEEEEEECCC----CEEEEecCCCEEEEEEC
Confidence 10 01235677787632 23445556777776554
No 7
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.68 E-value=0.22 Score=54.21 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecC-eE
Q 003591 50 GAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD-GL 128 (808)
Q Consensus 50 ~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~-~v 128 (808)
...+.+++|.-|+.|.+|+.+.+.|-.+|-.. ..-....+||+|+|+|..|=. .|
T Consensus 197 ~~~k~imsas~dt~i~lw~lkGq~L~~idtnq------------------------~~n~~aavSP~GRFia~~gFTpDV 252 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLKGQLLQSIDTNQ------------------------SSNYDAAVSPDGRFIAVSGFTPDV 252 (420)
T ss_pred CCceEEEEecCCCcEEEEecCCceeeeecccc------------------------ccccceeeCCCCcEEEEecCCCCc
Confidence 35888999988999999999865443322211 123356799999999999853 67
Q ss_pred EEEEeC-CCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 129 CVMYLY-GRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 129 ~Vv~LP-~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
-|-++= ...+.+.. . .|.+++- ...+.|..+.|.|.|. -++....|+++|+||++.
T Consensus 253 kVwE~~f~kdG~fqe--v-~rvf~Lk-------GH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQE--V-KRVFSLK-------GHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eEEEEEeccCcchhh--h-hhhheec-------cchhheeeeeeCCCcc-eeEEEecCCcEEEeeccc
Confidence 776653 33232211 1 3444443 3455677666666553 467889999999999976
No 8
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.64 E-value=1 Score=50.15 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 617 GRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRL 696 (808)
Q Consensus 617 ~~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~ 696 (808)
.+.++....+.++ .|.+..-+..= -.=|.+.+.+.+..=...+..+++..+.|.+..+.+.+-+.++.++++.|++++
T Consensus 116 ~r~~m~~q~~~vK-~~aRl~aK~~W-YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 193 (325)
T PF08317_consen 116 MRLLMDNQFQLVK-TYARLEAKKMW-YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL 193 (325)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 33222212211 345677777777776777778888888888888888888999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHH--HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 697 QHLRNLPGAHKKPLSGAE--HALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 697 ~~L~~l~~~~~~~LS~aE--k~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
..|+.+... ...-+.+ .+++.||..... ++..++..+++++.+++.+...
T Consensus 194 ~~Lk~~~~e--~~~~D~~eL~~lr~eL~~~~~-~i~~~k~~l~el~~el~~l~~~ 245 (325)
T PF08317_consen 194 ENLKQLVEE--IESCDQEELEALRQELAEQKE-EIEAKKKELAELQEELEELEEK 245 (325)
T ss_pred HHHHHHHhh--hhhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 998875421 1111111 233334443332 4444444444444444444443
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.48 Score=56.59 Aligned_cols=67 Identities=19% Similarity=0.375 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhhcC
Q 003591 674 RQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEG---VELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 674 ~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~---~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
+...|.-+++.+..++.+|..|+...|. +. .-|.-++++...-+ .++++|.++|+.++.++.++...
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~t---------t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~E 508 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDIT---------TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPE 508 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccc---------hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3455666677777777777777777654 22 11222333332221 35677888888888887776654
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.45 E-value=0.7 Score=49.44 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=55.9
Q ss_pred ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
.-+|+.+..|++|.|||-++. +.|=|.++-. +.++.|-.+- ..+.-.|++|.|||-.| -|+--.
T Consensus 105 EnEVK~Vaws~sG~~LATCSRDKSVWiWe~de------ddEfec~aVL--------~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 105 ENEVKCVAWSASGNYLATCSRDKSVWIWEIDE------DDEFECIAVL--------QEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEEecC------CCcEEEEeee--------ccccccccEEEEcCCcc-eeEEec
Confidence 469999999999999999975 6888888742 2345564332 22345799999999653 345556
Q ss_pred cCCeEEEEeccC
Q 003591 184 SDSVFRLFNLAS 195 (808)
Q Consensus 184 sD~~ir~ydl~~ 195 (808)
-||+||+|.-..
T Consensus 170 YDnTIk~~~~~~ 181 (312)
T KOG0645|consen 170 YDNTIKVYRDED 181 (312)
T ss_pred cCCeEEEEeecC
Confidence 699999999764
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.41 E-value=1.1 Score=45.35 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=70.6
Q ss_pred eeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec
Q 003591 106 FEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G-~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
..|..+..++++.+++..+ ...|.|..+... . . ...+. .....|..+.|+|. +..+++-+.
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-----~-~~~~~---------~~~~~i~~~~~~~~-~~~l~~~~~ 155 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--K-----C-LTTLR---------GHTDWVNSVAFSPD-GTFVASSSQ 155 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--E-----E-EEEec---------cCCCcEEEEEEcCc-CCEEEEEcC
Confidence 3688999999999998888 778888777521 0 0 11111 12346899999998 444454445
Q ss_pred CCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 185 D~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
|+.|++||+... .+...+..+ ...+.+++|.+.+ -.+++...+|.|+....
T Consensus 156 ~~~i~i~d~~~~--~~~~~~~~~-----------~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 156 DGTIKLWDLRTG--KCVATLTGH-----------TGEVNSVAFSPDG----EKLLSSSSDGTIKLWDL 206 (289)
T ss_pred CCcEEEEEcccc--ccceeEecC-----------ccccceEEECCCc----CEEEEecCCCcEEEEEC
Confidence 999999999642 222223211 1235677777632 35666666888876543
No 12
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.39 E-value=1.5 Score=48.88 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003591 664 AQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRAR 742 (808)
Q Consensus 664 l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r 742 (808)
+.+.+..+....+.|.+.++.+.+.-..|.+|.+.|.. +. ..++...|+.....+++..+++.|.+++..
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~---------~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELE---------NLKQLVEEIESCDQEELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555443 22 334444444444445556666666666665
Q ss_pred HHH
Q 003591 743 LRR 745 (808)
Q Consensus 743 ~~~ 745 (808)
++.
T Consensus 225 i~~ 227 (325)
T PF08317_consen 225 IEA 227 (325)
T ss_pred HHH
Confidence 554
No 13
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.34 E-value=0.31 Score=57.43 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=74.9
Q ss_pred eeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec
Q 003591 106 FEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
-.|.+|.+|+.|+|+|+++. +.|+|..|-....+ | +. ......|.-+.+||..-+.|||-|+
T Consensus 476 ~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~-------~--l~--------~rln~~vTa~~~~~~~~~~lvvats 538 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESH-------L--LK--------VRLNIDVTAAAFSPFVRNRLVVATS 538 (691)
T ss_pred CcceeEEEcCCCCEEEEEeccceEEEEEcccceee-------c--ch--------hccCcceeeeeccccccCcEEEEec
Confidence 35899999999999999975 46777777544221 1 11 1223468889999999999999999
Q ss_pred CCeEEEEeccCCCCCCceEEEeccCCCCCCCCC------CCcceEEEEecCCC-----CCCceEEEEEecCcc
Q 003591 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNA------ASICPVDFSFGGDH-----LWDRFSVFVLFSDGS 246 (808)
Q Consensus 185 D~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~------~~~~~vsf~Fg~~~-----~w~~~tLyiL~~~Gd 246 (808)
||.+-.||+.... +..+.....++. .-.++..+.|++.+ -|+..-+++...+++
T Consensus 539 ~nQv~efdi~~~~--------l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~~~ 603 (691)
T KOG2048|consen 539 NNQVFEFDIEARN--------LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFSLP 603 (691)
T ss_pred CCeEEEEecchhh--------hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecCCC
Confidence 9999999993211 222211111221 12356778888643 445555555555543
No 14
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=0.47 Score=56.64 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003591 767 VQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQ 803 (808)
Q Consensus 767 ~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~ 803 (808)
+.-+.|.+|+..|+++..++.-+.-.-..+++-||+.
T Consensus 483 ~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 483 LMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 5556688888888888877776666555666666543
No 15
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.97 E-value=2.1 Score=47.38 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=46.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003591 644 KHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLP 703 (808)
Q Consensus 644 ~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~ 703 (808)
.=|++.|++.+..-...+..+++..+.|.+..+.+++=+..+.++++.|+..+..|++..
T Consensus 136 eWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 136 EWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 346677777777777777777777778887778888888888888888888888877643
No 16
>PRK11637 AmiB activator; Provisional
Probab=94.90 E-value=2.1 Score=49.33 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
..+++..+..|..++..-..+++.++++++.+.++-+.+.++|++++++.+...+.+..
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666655556666666666666665555555555555444444444433
No 17
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=1.3 Score=54.20 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=80.8
Q ss_pred CceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEE-ecCeEEE
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGLCV 130 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~-G~~~v~V 130 (808)
|-+-+++.+++...+..+.+-.+.++|+.-+ +..+++. ..+.+|.+|.++|+|.|||+. ++-.|.|
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----------s~~~~lr---gh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----------SQEKVLR---GHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEecccc----------chheeec---ccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 4455677778888888888877777666432 3445555 236789999999999999998 5567888
Q ss_pred EEeCCCC-CCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 131 MYLYGRT-CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 131 v~LP~~~-~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
..|-... .++-+....| .+ + ..+..+-+++|||.++ ++++.-.|++|.+|+...
T Consensus 165 w~~~~~~~~~tl~~v~k~-----n~---~--~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKD-----NE---F--ILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred EEcccchhhhhcccCCcc-----cc---c--cccceeeeeeecCCCC-eEEeeccCCeEEEEccCC
Confidence 8886542 2211111111 00 1 1134578999999875 566667788999998754
No 18
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=0.76 Score=55.40 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 633 VEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 633 ~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
...+++-++++.+-|..++++++.|-.+++.+++..+.++-..+.|++.+......|.++.+.++.|+.
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556689999999999999999999999999999999999999999999999999999999999886
No 19
>PTZ00420 coronin; Provisional
Probab=94.54 E-value=3.5 Score=49.41 Aligned_cols=163 Identities=9% Similarity=0.067 Sum_probs=92.7
Q ss_pred CceEEEEeCCceEEEEeCC-CcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCC-CCEEEEEec-CeE
Q 003591 52 PKNLVAWDGASRLYYWDQN-AQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRN-GSALLLIGS-DGL 128 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~-~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~s-G~~Lal~G~-~~v 128 (808)
.-+.+++.+..-.+.|+.. ..++-++.+- +.. . ......+. .. .-.|..|..||. +.+||-.|. ..|
T Consensus 30 ~s~~ia~n~~~~A~~w~~~gGG~~gvI~L~--~~~-r----~~~v~~L~--gH-~~~V~~lafsP~~~~lLASgS~DgtI 99 (568)
T PTZ00420 30 DSCGIACSSGFVAVPWEVEGGGLIGAIRLE--NQM-R----KPPVIKLK--GH-TSSILDLQFNPCFSEILASGSEDLTI 99 (568)
T ss_pred CceeEeeCCCeEEEEEEcCCCCceeEEEee--ecC-C----CceEEEEc--CC-CCCEEEEEEcCCCCCEEEEEeCCCeE
Confidence 3466777766667788753 2344443332 111 0 12233444 33 247999999997 788877765 577
Q ss_pred EEEEeCCCCCCCCCCce-eeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEec
Q 003591 129 CVMYLYGRTCSSDNKTI-ICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQ 207 (808)
Q Consensus 129 ~Vv~LP~~~~~~d~~~~-~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~ 207 (808)
.|-.++....... .+ .+. ..+ ..+...|..+.|||.+...|+.-..|++|++||+... ...+.+.
T Consensus 100 rIWDi~t~~~~~~--~i~~p~-~~L-------~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----~~~~~i~ 165 (568)
T PTZ00420 100 RVWEIPHNDESVK--EIKDPQ-CIL-------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----KRAFQIN 165 (568)
T ss_pred EEEECCCCCcccc--ccccce-EEe-------ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----cEEEEEe
Confidence 8888875321100 00 010 011 1234579999999987666677788999999999763 2223322
Q ss_pred cCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 208 PVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 208 ~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
. ...+.+++|.+++ --|.....+|.|...-|
T Consensus 166 ~----------~~~V~SlswspdG----~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 166 M----------PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDP 196 (568)
T ss_pred c----------CCcEEEEEECCCC----CEEEEEecCCEEEEEEC
Confidence 1 1135677787642 22333445777777554
No 20
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=94.53 E-value=0.36 Score=55.37 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=82.8
Q ss_pred CCceEeecCCCcceeeeEEEeCCCCCEE-EEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEE
Q 003591 93 FPSKVMRADVKLNFEVSRISINRNGSAL-LLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSW 171 (808)
Q Consensus 93 ~~yk~L~~~~~l~f~i~~i~~s~sG~~L-al~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~W 171 (808)
..+|.|.|.- .-.|+.+..|++|..+ |+.|+...-|+ +|.+..-..-++---|-++ .+.+..+-..|....|
T Consensus 204 ~~fr~l~P~E--~h~i~sl~ys~Tg~~iLvvsg~aqakl~---DRdG~~~~e~~KGDQYI~D--m~nTKGHia~lt~g~w 276 (641)
T KOG0772|consen 204 RSFRQLQPCE--THQINSLQYSVTGDQILVVSGSAQAKLL---DRDGFEIVEFSKGDQYIRD--MYNTKGHIAELTCGCW 276 (641)
T ss_pred hhhhccCccc--ccccceeeecCCCCeEEEEecCcceeEE---ccCCceeeeeeccchhhhh--hhccCCceeeeecccc
Confidence 3477777443 3579999999999765 45566655544 3422200000000012222 3345556677889999
Q ss_pred ecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 172 HPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 172 HP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
||..-..+++-..|+++|+||+.+... --|.|.-.+ .| ..-..+.+..|.++..| +-....||.|-+
T Consensus 277 hP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~--~~----g~Rv~~tsC~~nrdg~~----iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 277 HPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKP--AG----GKRVPVTSCAWNRDGKL----IAAGCLDGSIQI 343 (641)
T ss_pred ccCcccceEEecCCCcEEEEecCCchh-heeEEeecc--CC----CcccCceeeecCCCcch----hhhcccCCceee
Confidence 999988888889999999999977433 333443221 11 11235677888876543 223345777765
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.47 E-value=4 Score=41.09 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=66.7
Q ss_pred eeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec
Q 003591 106 FEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G-~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
..+..+..+++|++++..+ ...|.|..+... . . .+.+. .....|..+.|+|. ..+++..+
T Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~-----~-~~~~~---------~~~~~i~~~~~~~~--~~~~~~~~ 112 (289)
T cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETG--E-----C-VRTLT---------GHTSYVSSVAFSPD--GRILSSSS 112 (289)
T ss_pred cceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--c-----c-eEEEe---------ccCCcEEEEEEcCC--CCEEEEec
Confidence 4567899999999998888 557777776532 1 0 11111 12336899999998 34545555
Q ss_pred -CCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 185 -DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 185 -D~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
|+.|++||+... .+ ...+.. ....+.+++|.+. ..-++....+|.|+..-.
T Consensus 113 ~~~~i~~~~~~~~--~~--~~~~~~---------~~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 113 RDKTIKVWDVETG--KC--LTTLRG---------HTDWVNSVAFSPD----GTFVASSSQDGTIKLWDL 164 (289)
T ss_pred CCCeEEEEECCCc--EE--EEEecc---------CCCcEEEEEEcCc----CCEEEEEcCCCcEEEEEc
Confidence 999999999631 12 122210 1124667888774 223444444888877543
No 22
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.33 E-value=3.2 Score=45.55 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKV-------HFELKHHAPQLKQIIDDQHARLS--------EAQNKILKVEERQSRLEERIDH 684 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v-------~~el~rR~~~L~~e~~~Ql~~L~--------~l~e~i~~l~~~~e~L~~Rie~ 684 (808)
.|....+.++...+..+-+| ..-|.+|++.|+.++++=...+. .+..++.+|+.....|+..+++
T Consensus 52 ~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~ 131 (310)
T PF09755_consen 52 HLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQ 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677776776666666 44588999999999877654444 4677777787777777777776
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhhhhhh--------------HHHHHHHHHHHHHHHHHhhcC
Q 003591 685 AVQQHNILEQRLQH-LRNLPGAHKKPLSGAEHALKAELDHFEGVE--------------LDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 685 a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~~~~~--------------l~~L~~~ie~lk~r~~~~~~~ 749 (808)
.|+.++.|+.+ |.+|.+ ...+...+|+++..++ +-.|+++++.|-+.-++++.+
T Consensus 132 ---EqE~~V~kL~k~i~~Le~--------e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 132 ---EQEYLVNKLQKKIERLEK--------EKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred ---hHHHHHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766 555421 1123334444444311 136788888887776666666
Q ss_pred CCCC
Q 003591 750 PEGS 753 (808)
Q Consensus 750 ~~~~ 753 (808)
-...
T Consensus 201 l~~~ 204 (310)
T PF09755_consen 201 LEQP 204 (310)
T ss_pred Hccc
Confidence 5543
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.23 E-value=1.7 Score=51.15 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=47.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
...+..++..|+.++..+.++...++++.+.+....+.+....+.+..++++..+|+..|.
T Consensus 166 ~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 166 VEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668888888999998888888888888888887777777777777666666666666654
No 24
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.14 E-value=2 Score=51.44 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=69.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELD 722 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~ 722 (808)
+..++..|...++.-...++........+.+.-+.+.++++.+.+.|.++.+.++.|+. .|....+.|+
T Consensus 353 lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk-----------~E~eAr~kL~ 421 (569)
T PRK04778 353 LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK-----------DELEAREKLE 421 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 33344444444443333333333334444455566666666666777777776666663 3333333333
Q ss_pred hhhhhhHH----------------HHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHH-HHHHHHHHHHHhhhh
Q 003591 723 HFEGVELD----------------ALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDA-QISQLRSLMEKLSLV 785 (808)
Q Consensus 723 ~~~~~~l~----------------~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~l~~~L~~~~~~ 785 (808)
.+.. ++. .+...+..++.+++.+..+...++.+ --.-. +...++..+..+...
T Consensus 422 ~~~~-~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~g~VN---------m~ai~~e~~e~~~~~~~L~~q 491 (569)
T PRK04778 422 RYRN-KLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEEKPIN---------MEAVNRLLEEATEDVETLEEE 491 (569)
T ss_pred HHHH-HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCC---------HHHHHHHHHHHHHHHHHHHHH
Confidence 3331 111 22333445555555555554433212 11112 455666666667777
Q ss_pred hHHHHHHHHHHHHHHhh
Q 003591 786 NSENLKKVKLVESALKK 802 (808)
Q Consensus 786 i~e~~~k~~~~~~~~~~ 802 (808)
..|+..-+..+|..+..
T Consensus 492 ~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 492 TEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776655
No 25
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.89 E-value=1.5 Score=51.08 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcc
Q 003591 771 QISQLRSLMEKLSLVNSENLKKVKLVESALKKQES 805 (808)
Q Consensus 771 q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~~ 805 (808)
+...|+..++.+.+.+..+......|..+||..-+
T Consensus 166 ~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K 200 (475)
T PRK10361 166 ERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNK 200 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45677888888889999999999999999987543
No 26
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=93.83 E-value=7.5 Score=41.13 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH- 698 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~- 698 (808)
+|.+.-++++ -..+.+-+.+...-+.|...+++-...|.++++.+.++.+++..+..+|+++..+.+.+..+.+.
T Consensus 3 i~~r~~~~~~----a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A 78 (225)
T COG1842 3 IFSRLKDLVK----ANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA 78 (225)
T ss_pred hHHHHHHHHH----HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 34455556666667999999999999999999999999999999999999999999999999998
Q ss_pred Hh
Q 003591 699 LR 700 (808)
Q Consensus 699 L~ 700 (808)
|.
T Consensus 79 l~ 80 (225)
T COG1842 79 LQ 80 (225)
T ss_pred HH
Confidence 66
No 27
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.68 E-value=3.8 Score=48.76 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 003591 646 HAPQLKQIIDDQHARLSEAQNKILKVEER-------------QSRLEERID--HAVQQHNILEQRLQHLRNLPGAHKKPL 710 (808)
Q Consensus 646 R~~~L~~e~~~Ql~~L~~l~e~i~~l~~~-------------~e~L~~Rie--~a~~~Q~~L~~R~~~L~~l~~~~~~~L 710 (808)
-+..++.++.+|-+.+...+-.+..+..+ +...+.|++ .|.++|..|++.+..||. -|
T Consensus 524 ~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~-------~L 596 (961)
T KOG4673|consen 524 TIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQ-------TL 596 (961)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------HH
Confidence 46788889999988888877777777643 233556666 888899999999999885 24
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 003591 711 SGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGS 753 (808)
Q Consensus 711 S~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~ 753 (808)
+.+|.+...-=+.|.+ ++..|..|+++.-.|.+.+.++....
T Consensus 597 ~~~Eq~aarrEd~~R~-Ei~~LqrRlqaaE~R~eel~q~v~~T 638 (961)
T KOG4673|consen 597 SKKEQQAARREDMFRG-EIEDLQRRLQAAERRCEELIQQVPET 638 (961)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5577766555555554 77888999999999999888886544
No 28
>PRK09039 hypothetical protein; Validated
Probab=93.57 E-value=1.2 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCC
Q 003591 728 ELDALHSSIEALRARLRRLTQSP 750 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r~~~~~~~~ 750 (808)
++..|+++|++||.++..+...-
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766665553
No 29
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.48 E-value=1.5 Score=53.92 Aligned_cols=92 Identities=13% Similarity=0.268 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhh
Q 003591 646 HAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEHALKAELDHF 724 (808)
Q Consensus 646 R~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~ 724 (808)
++..|+.+++.=.+....+++|++.+.++++.|.+|+++ +.++++. +..+- ...+.+.+.=+.+..+|+.|
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~-------vl~~l~~~~P~LS-~AEr~~~~EL~~~~~~l~~l 651 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR-------VLQLLNSQLPVLS-EAEREFKKELERMKDQLQDL 651 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhccCCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 333344443333334445556666666666666666555 4444433 22222 22344555556788889999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q 003591 725 EGVELDALHSSIEALRARLRRL 746 (808)
Q Consensus 725 ~~~~l~~L~~~ie~lk~r~~~~ 746 (808)
.. .++.++.+++..+.+++..
T Consensus 652 ~~-si~~lk~k~~~Q~~~i~~~ 672 (717)
T PF10168_consen 652 KA-SIEQLKKKLDYQQRQIESQ 672 (717)
T ss_pred HH-HHHHHHHHHHHHHHHHhcc
Confidence 85 8899999999988887743
No 30
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=93.46 E-value=0.71 Score=52.01 Aligned_cols=107 Identities=12% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003591 666 NKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRR 745 (808)
Q Consensus 666 e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~ 745 (808)
..+++|..+...|..+++...........++..++.-- +.--.-+..+. .++..+...+|++|..|+.
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y-----------~~~s~~V~~~t-~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKY-----------KQASEGVSERT-RELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------HHHhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555443211 11111122222 2555667777777777665
Q ss_pred hhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 746 LTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
-..++. .-+.+-+||.+|.++-.-|.+|.-|+=.|++.|
T Consensus 320 rg~~mt----------------D~sPlv~IKqAl~kLk~EI~qMdvrIGVleh~L 358 (359)
T PF10498_consen 320 RGSSMT----------------DGSPLVKIKQALTKLKQEIKQMDVRIGVLEHTL 358 (359)
T ss_pred hcCCCC----------------CCCHHHHHHHHHHHHHHHHHHhhhhhheehhhc
Confidence 222211 223477899999999999999999999998876
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.17 E-value=3.3 Score=49.83 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=47.7
Q ss_pred CCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEE
Q 003591 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV 130 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~V 130 (808)
..+|+....+|..++.=.+ ..+-+.++|.- ..++|..+. ...|..|.+||+|+||..+.+++.++
T Consensus 16 r~Gnl~ft~dG~sviSPvG--Nrvsv~dLknN-----------~S~Tl~~e~--~~NI~~ialSp~g~lllavdE~g~~~ 80 (893)
T KOG0291|consen 16 RAGNLVFTKDGNSVISPVG--NRVSVFDLKNN-----------KSYTLPLET--RYNITRIALSPDGTLLLAVDERGRAL 80 (893)
T ss_pred ecCcEEECCCCCEEEeccC--CEEEEEEccCC-----------cceeEEeec--CCceEEEEeCCCceEEEEEcCCCcEE
Confidence 4667776665566554444 44566677632 233454333 57899999999999999999986655
Q ss_pred -EEeCCCC
Q 003591 131 -MYLYGRT 137 (808)
Q Consensus 131 -v~LP~~~ 137 (808)
|.++.+.
T Consensus 81 lvs~~~r~ 88 (893)
T KOG0291|consen 81 LVSLLSRS 88 (893)
T ss_pred EEecccce
Confidence 4566553
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.09 E-value=1.6 Score=51.39 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHh
Q 003591 785 VNSENLKKVKLVESALK 801 (808)
Q Consensus 785 ~i~e~~~k~~~~~~~~~ 801 (808)
.+..++.+++..+.-|.
T Consensus 284 e~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 33
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=93.06 E-value=0.83 Score=50.83 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=59.1
Q ss_pred ceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 105 NFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
.-||.-|.-|..-.+||-=|.. ++.|..|..-.+. -+|. .|. .+..+|.++.|||..++.|.+--
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~----------~pVA--~fk--~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG----------QPVA--TFK--YHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccCC----------Ccce--eEE--eccCCeeEEEeccccCceEEecc
Confidence 3588888888888866665554 7889998643222 1222 111 23568999999999999999999
Q ss_pred cCCeEEEEeccCCCC
Q 003591 184 SDSVFRLFNLASDVM 198 (808)
Q Consensus 184 sD~~ir~ydl~~~~~ 198 (808)
+||+|.+||++...+
T Consensus 368 ~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 368 EDNQITIWDLSVEAD 382 (440)
T ss_pred CCCcEEEEEeeccCC
Confidence 999999999987544
No 34
>PRK11637 AmiB activator; Provisional
Probab=93.03 E-value=5.4 Score=46.07 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
....--..+.+.+..+..+++....++..++++++.++..-+.+.++++. +++.+.+|+..+.+
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~---~~~~l~~rlra~Y~ 135 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA---QERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34444556778888888888888888888888888888776666666666 56666666666443
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.80 E-value=2.9 Score=48.67 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=72.1
Q ss_pred ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
.+.|..+.+||+|++++=.+. .+|.|-.++.. +. | +.+ ...+...|-.+.|||.+ .-|+--.
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~-------~--~~~------l~gH~~~v~~~~f~p~g-~~i~Sgs 265 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GR-------N--LKT------LKGHSTYVTSVAFSPDG-NLLVSGS 265 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCC-Ce-------E--EEE------ecCCCCceEEEEecCCC-CEEEEec
Confidence 468999999999987665543 57888777332 11 1 111 11234578999999999 8889999
Q ss_pred cCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
.|++||+||+.. .++...+..+ ...+.+.+|.++ .--|+....||-|..
T Consensus 266 ~D~tvriWd~~~--~~~~~~l~~h-----------s~~is~~~f~~d----~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 266 DDGTVRIWDVRT--GECVRKLKGH-----------SDGISGLAFSPD----GNLLVSASYDGTIRV 314 (456)
T ss_pred CCCcEEEEeccC--CeEEEeeecc-----------CCceEEEEECCC----CCEEEEcCCCccEEE
Confidence 999999999976 2333333222 123556777763 234555555666655
No 36
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=92.79 E-value=3.5 Score=44.34 Aligned_cols=133 Identities=11% Similarity=0.123 Sum_probs=89.7
Q ss_pred CCceEEEEeCCceEEEEeCCCcEEEEEeeccCCC-------CCCcccc--cCCceEeecCCCcceeeeEEEeCCCCCEEE
Q 003591 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEP-------DPTSILA--AFPSKVMRADVKLNFEVSRISINRNGSALL 121 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~-------~~~~~~~--~~~yk~L~~~~~l~f~i~~i~~s~sG~~La 121 (808)
..-|+....||.+|=-|++....+.++++-|... |.+-..- ..+..+-....+ -.|+.+-+|..|++.+
T Consensus 32 ~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~--~~Vk~~~F~~~gn~~l 109 (327)
T KOG0643|consen 32 STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN--SPVKRVDFSFGGNLIL 109 (327)
T ss_pred CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC--CeeEEEeeccCCcEEE
Confidence 4667777778999999999988888888866542 1110000 111122222233 4689999999999999
Q ss_pred EEecC------eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 122 LIGSD------GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 122 l~G~~------~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
+..++ .|.|.+++...+..+..+ | ++.+.-+.+.|.+|.|-|+++ +|+.=-+|+.|+.||+..
T Consensus 110 ~~tD~~mg~~~~v~~fdi~~~~~~~~s~e--p--------~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 110 ASTDKQMGYTCFVSVFDIRDDSSDIDSEE--P--------YLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDART 178 (327)
T ss_pred EEehhhcCcceEEEEEEccCChhhhcccC--c--------eEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEccc
Confidence 98775 788999986542212211 1 223334557899999999864 778888999999999976
Q ss_pred C
Q 003591 196 D 196 (808)
Q Consensus 196 ~ 196 (808)
+
T Consensus 179 g 179 (327)
T KOG0643|consen 179 G 179 (327)
T ss_pred C
Confidence 3
No 37
>PTZ00421 coronin; Provisional
Probab=92.61 E-value=6.1 Score=46.62 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=46.7
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe--
Q 003591 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS-- 183 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt-- 183 (808)
.|..|..||+|++||..+. ..|.|.++.. +. . .. .+. . .....+..+.|+|..+..+.+-.
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~-----~-v~--tl~--~----H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GT-----I-VS--SVE--A----HASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECCC--Cc-----E-EE--EEe--c----CCCCcceEEEEcCCCCeEEEEecCC
Confidence 5889999999999988775 4677776532 11 1 11 121 1 12234567899997654333332
Q ss_pred -cCCeEEEEeccC
Q 003591 184 -SDSVFRLFNLAS 195 (808)
Q Consensus 184 -sD~~ir~ydl~~ 195 (808)
+|+.|++||+..
T Consensus 234 s~Dr~VklWDlr~ 246 (493)
T PTZ00421 234 SQQRQIMLWDTRK 246 (493)
T ss_pred CCCCeEEEEeCCC
Confidence 489999999965
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=5.4 Score=48.39 Aligned_cols=148 Identities=22% Similarity=0.264 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003591 634 EYAHKVHFELKHHAPQLKQIIDDQHARLS-------EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAH 706 (808)
Q Consensus 634 ~~~~~v~~el~rR~~~L~~e~~~Ql~~L~-------~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~ 706 (808)
.....|+++++.+...|-.|++.+-..-= ...+..+.++..-..|.+.+..+....+.+..++.+|.. .
T Consensus 457 ~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~lee----q 532 (698)
T KOG0978|consen 457 ETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEE----Q 532 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 44456677788888777777766543322 234444445555667777888888888888888888774 4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhh
Q 003591 707 KKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVN 786 (808)
Q Consensus 707 ~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i 786 (808)
.+-|+..+..-.+|+..+.. .+..++..+-.+...++.++.+... +..++++|+-.+++.+..+
T Consensus 533 ~~~lt~~~~~l~~el~~~~~-~le~~kk~~~e~~~~~~~Lq~~~ek---------------~~~~le~i~~~~~e~~~el 596 (698)
T KOG0978|consen 533 ERGLTSNESKLIKELTTLTQ-SLEMLKKKAQEAKQSLEDLQIELEK---------------SEAKLEQIQEQYAELELEL 596 (698)
T ss_pred HHHhhHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 45677778888888887763 6666666666666666666665432 5678999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 003591 787 SENLKKVKLVESALK 801 (808)
Q Consensus 787 ~e~~~k~~~~~~~~~ 801 (808)
..+.+|.+.+|+.++
T Consensus 597 e~~~~k~~rleEE~e 611 (698)
T KOG0978|consen 597 EIEKFKRKRLEEELE 611 (698)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998775
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.53 E-value=3.3 Score=49.83 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=87.4
Q ss_pred CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCC
Q 003591 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD--GLCVMYLYGRTC 138 (808)
Q Consensus 61 ~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~--~v~Vv~LP~~~~ 138 (808)
|+.+=+||=++ ..+||++....|+ +-.-+.+-|+|.++|.-+-. .|.|..+-. |
T Consensus 413 DGtVRAwDlkR--------------------YrNfRTft~P~p~--QfscvavD~sGelV~AG~~d~F~IfvWS~qT--G 468 (893)
T KOG0291|consen 413 DGTVRAWDLKR--------------------YRNFRTFTSPEPI--QFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--G 468 (893)
T ss_pred CCeEEeeeecc--------------------cceeeeecCCCce--eeeEEEEcCCCCEEEeeccceEEEEEEEeec--C
Confidence 77777777654 3478888866665 55688999999988765433 444443321 2
Q ss_pred CCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCC
Q 003591 139 SSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAA 218 (808)
Q Consensus 139 ~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~ 218 (808)
. + ++ ..+.+..+|....+.|.++ +|+-..=|.+||+||+-.....- .++.+.
T Consensus 469 q-----l------lD----iLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~v-Etl~i~----------- 520 (893)
T KOG0291|consen 469 Q-----L------LD----ILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTV-ETLEIR----------- 520 (893)
T ss_pred e-----e------ee----hhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCcee-eeEeec-----------
Confidence 1 1 11 2345677888888888766 88888899999999996643221 123322
Q ss_pred CcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 219 SICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 219 ~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
.+|.+++|.|+ .=-|-|++-||.|-..-+
T Consensus 521 -sdvl~vsfrPd----G~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 521 -SDVLAVSFRPD----GKELAVATLDGQITFFDI 549 (893)
T ss_pred -cceeEEEEcCC----CCeEEEEEecceEEEEEh
Confidence 25778888884 346777888887755433
No 40
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=92.37 E-value=2.3 Score=48.17 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=98.4
Q ss_pred CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCCCC
Q 003591 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGRTC 138 (808)
Q Consensus 61 ~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~--~~v~Vv~LP~~~~ 138 (808)
...||.-.+..++|...++|.. . ....+... .. .-+|.-+.+||-+.++...|+ .+|++-+|..- .
T Consensus 239 h~~lF~sv~dd~~L~iwD~R~~-~-------~~~~~~~~--ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL-~ 306 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTRSN-T-------SKPSHSVK--AH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNL-N 306 (422)
T ss_pred chhhheeecCCCeEEEEEcCCC-C-------CCCccccc--cc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhc-c
Confidence 5567777777788888888862 1 12333333 21 357889999999988888776 57777777432 1
Q ss_pred CCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCC-CceEEEeccCCCCCCCCC
Q 003591 139 SSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQ-PEQEYYLQPVEPGRYRNA 217 (808)
Q Consensus 139 ~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~-p~q~~~l~~~~~g~~~~~ 217 (808)
. . .|....++-.|.||.|-|.-+++|+.=-+|+.+.+||+++-+++ +.++-.=.| +.--|--
T Consensus 307 ~-----------~----lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgp--pEllF~H 369 (422)
T KOG0264|consen 307 K-----------P----LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGP--PELLFIH 369 (422)
T ss_pred c-----------C----ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCC--cceeEEe
Confidence 1 1 23344567789999999999999999999999999999884442 100100000 0000000
Q ss_pred CC--cceEEEEecCCCCCCceEEEEEecCccEE
Q 003591 218 AS--ICPVDFSFGGDHLWDRFSVFVLFSDGSIY 248 (808)
Q Consensus 218 ~~--~~~vsf~Fg~~~~w~~~tLyiL~~~GdIY 248 (808)
.| -.+.+|++-|. .+|+|--+..|+.+-
T Consensus 370 gGH~~kV~DfsWnp~---ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 370 GGHTAKVSDFSWNPN---EPWTIASVAEDNILQ 399 (422)
T ss_pred cCcccccccccCCCC---CCeEEEEecCCceEE
Confidence 12 14678888775 456766666665443
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.20 E-value=2.8 Score=44.49 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 636 AHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQ 675 (808)
Q Consensus 636 ~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~ 675 (808)
++.-...|.+|+..|..++++--.+|..+.+++..+...+
T Consensus 34 aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 34 AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333445777777776666666665555555555555443
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.04 E-value=8.6 Score=40.97 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=11.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVE 672 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~ 672 (808)
+..=++.++.++.+=.+.+..++.+++++.
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le 58 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLE 58 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343333333333333333333
No 43
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.01 E-value=1.6 Score=42.80 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 003591 769 DAQISQLRSLMEKLSLVNSENLKKVKL 795 (808)
Q Consensus 769 ~~q~~~l~~~L~~~~~~i~e~~~k~~~ 795 (808)
+-++..|.....+.-..+.++.+|.+.
T Consensus 114 eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 114 ERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666553
No 44
>PRK09039 hypothetical protein; Validated
Probab=91.98 E-value=8.1 Score=43.43 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.2
Q ss_pred HHHhHHHHH
Q 003591 643 LKHHAPQLK 651 (808)
Q Consensus 643 l~rR~~~L~ 651 (808)
++.++..|-
T Consensus 58 L~~qIa~L~ 66 (343)
T PRK09039 58 LNSQIAELA 66 (343)
T ss_pred HHHHHHHHH
Confidence 333333333
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.88 E-value=6.3 Score=49.77 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER 674 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~ 674 (808)
-.+|..|...+..+.+++...++.++..|+.+...
T Consensus 815 ~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 815 IPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666667777777777777777776654
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.79 E-value=12 Score=47.31 Aligned_cols=70 Identities=20% Similarity=0.394 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003591 676 SRLEERIDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEH---ALKAELDHFEGVELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk---~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~ 747 (808)
..+.+++...+++++.+.++++. ..+.. ...--|++.|. ..+.|++.... ++..+.+.++.++..+..+.
T Consensus 284 ~~~~~~i~~~qek~~~l~~ki~~~~~k~~-~~r~k~teiea~i~~~~~e~~~~d~-Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 284 NNQEEEIKKKQEKVDTLQEKIEEKQGKIE-EARQKLTEIEAKIGELKDEVDAQDE-EIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666 32222 22233444443 45566665553 55555555555555444433
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=91.72 E-value=2.1 Score=45.51 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=74.6
Q ss_pred CceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecC-eEEE
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD-GLCV 130 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~-~v~V 130 (808)
.--||++++++.|-+||=.+ ....+.|.|+. +-.|+.+.+-|+|+.|+-++++ .+.|
T Consensus 136 QteLis~dqsg~irvWDl~~--------------------~~c~~~liPe~--~~~i~sl~v~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGE--------------------NSCTHELIPED--DTSIQSLTVMPDGSMLAAANNKGNCYV 193 (311)
T ss_pred cceEEeecCCCcEEEEEccC--------------------CccccccCCCC--CcceeeEEEcCCCcEEEEecCCccEEE
Confidence 44567777777777777543 12345566444 4579999999999999999887 4666
Q ss_pred EEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 131 v~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
=+|+....+ +.+ .++. .| .-...-|.+++.-|. ..+|++-.+|.++++|+++.
T Consensus 194 W~l~~~~~~---s~l----~P~~--k~--~ah~~~il~C~lSPd-~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 194 WRLLNHQTA---SEL----EPVH--KF--QAHNGHILRCLLSPD-VKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred EEccCCCcc---ccc----eEhh--he--ecccceEEEEEECCC-CcEEEeecCCceEEEEecCC
Confidence 688864333 112 1221 11 223445888888775 37899999999999999976
No 48
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.70 E-value=5.1 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.266 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Q 003591 770 AQISQLRSLMEKLSLVNSENLKK 792 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k 792 (808)
.++..++..++++...+.++.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~~ 455 (1179)
T TIGR02168 433 AELKELQAELEELEEELEELQEE 455 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.66 E-value=16 Score=42.92 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 003591 728 ELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
++..++.++++++.+++....+
T Consensus 276 ~v~~l~~qi~~l~~~l~~~~~~ 297 (498)
T TIGR03007 276 DVIATKREIAQLEEQKEEEGSA 297 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 4567778888888887665544
No 50
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.57 E-value=6.1 Score=44.97 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=73.0
Q ss_pred CcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE
Q 003591 103 KLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 103 ~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
+.+-.|..+.+.|+|+|+.-....+.-....-.. ++ |-+.--++ .+...+-.+.+||.|- -+++=
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-----g~---~lt~vs~~------~s~v~~ts~~fHpDgL-ifgtg 365 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS-----GS---QLTVVSDE------TSDVEYTSAAFHPDGL-IFGTG 365 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccC-----Cc---EEEEEeec------cccceeEEeeEcCCce-EEecc
Confidence 3456788999999999999887776555443221 11 21111111 2346789999999862 34556
Q ss_pred ecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 183 SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 183 tsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
|.|+++++||++.... +. +.++ -.-.+-++.|+- .+|=|-+...||.|..
T Consensus 366 t~d~~vkiwdlks~~~-------~a-----~Fpg-ht~~vk~i~FsE----NGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTN-------VA-----KFPG-HTGPVKAISFSE----NGYWLATAADDGSVKL 415 (506)
T ss_pred CCCceEEEEEcCCccc-------cc-----cCCC-CCCceeEEEecc----CceEEEEEecCCeEEE
Confidence 8899999999976221 10 1111 112467888987 4466777778888776
No 51
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.51 E-value=13 Score=42.46 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeE-E
Q 003591 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGL-C 129 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v-~ 129 (808)
.+-+.+...-.++.|+|..++.|.---++|.+. .|-...-+ .-+.+++.+.+-|+|-.++.....++ -
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----------~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----------QLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCc----------EEEEEeec-cccceeEEeeEcCCceEEeccCCCceEE
Confidence 455667666689999999998777766776442 22222211 12457889999999998888777653 3
Q ss_pred EEEeCCCC--CCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCC
Q 003591 130 VMYLYGRT--CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDV 197 (808)
Q Consensus 130 Vv~LP~~~--~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~ 197 (808)
|-+|-... .+|.+ ...+|+.+.|- ..+=.|+|=++|+.|++||+.+..
T Consensus 373 iwdlks~~~~a~Fpg-------------------ht~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPG-------------------HTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EEEcCCccccccCCC-------------------CCCceeEEEec-cCceEEEEEecCCeEEEEEehhhc
Confidence 44553221 22222 23345554441 113457888888889999997743
No 52
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=91.50 E-value=4.3 Score=43.89 Aligned_cols=119 Identities=18% Similarity=0.339 Sum_probs=72.9
Q ss_pred EEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEE-EEEecCCeE
Q 003591 110 RISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL-GILSSDSVF 188 (808)
Q Consensus 110 ~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~L-vvLtsD~~i 188 (808)
|++++.+|++||++-+..|.| |+++.|-.++.+|+ +|.. .+..+=+++.|-| |..| +.-.|.++|
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEi-----Rsa~Ddf~si~~kc-qVpk------D~~PQWRkl~WSp--D~tlLa~a~S~G~i 67 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEI-----RSAKDDFSSIIGKC-QVPK------DPNPQWRKLAWSP--DCTLLAYAESTGTI 67 (282)
T ss_pred ceeecCCCcEEEEEeccEEEE-----EeccCCchheeEEE-ecCC------CCCchheEEEECC--CCcEEEEEcCCCeE
Confidence 678999999999999887655 23342334555555 5532 3455789999942 5445 555667999
Q ss_pred EEEeccCCCCCCceEEEeccCCCCCCCCC-CCcceEEEEecCC---CCCCceEEEEEecCccEEEEc
Q 003591 189 RLFNLASDVMQPEQEYYLQPVEPGRYRNA-ASICPVDFSFGGD---HLWDRFSVFVLFSDGSIYILC 251 (808)
Q Consensus 189 r~ydl~~~~~~p~q~~~l~~~~~g~~~~~-~~~~~vsf~Fg~~---~~w~~~tLyiL~~~GdIYalc 251 (808)
|+||+.- ..-|.+.+ +..+.. .+..+++++|-.. ..|. .=|+|+.-.|.+=..+
T Consensus 68 ~vfdl~g-----~~lf~I~p---~~~~~~d~~~Aiagl~Fl~~~~s~~ws-~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 68 RVFDLMG-----SELFVIPP---AMSFPGDLSDAIAGLIFLEYKKSAQWS-YELLVINYRGQLRSYL 125 (282)
T ss_pred EEEeccc-----ceeEEcCc---ccccCCccccceeeeEeeccccccccc-eeEEEEeccceeeeEE
Confidence 9999954 11244433 222221 1234678888863 3443 3566666677774433
No 53
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=91.46 E-value=5.4 Score=51.30 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=6.1
Q ss_pred CCEEEEEecC
Q 003591 117 GSALLLIGSD 126 (808)
Q Consensus 117 G~~Lal~G~~ 126 (808)
+.+.+|+|+.
T Consensus 23 ~~~~~i~G~N 32 (1179)
T TIGR02168 23 KGITGIVGPN 32 (1179)
T ss_pred CCcEEEECCC
Confidence 4466666664
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=91.32 E-value=8.1 Score=42.29 Aligned_cols=122 Identities=14% Similarity=0.210 Sum_probs=76.4
Q ss_pred CCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEE-
Q 003591 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLC- 129 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~- 129 (808)
..|++.|.+-.+.+|+..-+...+-.-|+|.-. ..++.+..+..+-.-+..+|..||+|+++.|.+..+.+
T Consensus 141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d--------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~ 212 (311)
T KOG1446|consen 141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFD--------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIY 212 (311)
T ss_pred CCCcceeECCCCcEEEEecCCCeEEEEEecccC--------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEE
Confidence 578888888778888777665566666888654 34566555543334689999999999999999888754
Q ss_pred EEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 130 VMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 130 Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
|+.=++. . + -.+++.-+ . ....+ ..+.+-|.| .+++.=..|++|.+|++..
T Consensus 213 ~lDAf~G------~-~-~~tfs~~~----~-~~~~~-~~a~ftPds-~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 213 LLDAFDG------T-V-KSTFSGYP----N-AGNLP-LSATFTPDS-KFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEccCC------c-E-eeeEeecc----C-CCCcc-eeEEECCCC-cEEEEecCCCcEEEEEcCC
Confidence 4433322 1 1 12233221 1 11222 455555543 2444445569999999955
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.32 E-value=10 Score=50.35 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=16.5
Q ss_pred CcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 763 GKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 763 ~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
|-..++++. |++.|..-+....++..++..+|..|
T Consensus 431 ~~~~~SdEe---Le~~LenF~aklee~e~qL~elE~kL 465 (1486)
T PRK04863 431 GLPDLTADN---AEDWLEEFQAKEQEATEELLSLEQKL 465 (1486)
T ss_pred CCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456554 44444444444444444444444443
No 56
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.30 E-value=4.2 Score=42.29 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 660 RLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 660 ~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
...+|+++++..++..+.|-+++++.+..-++..+|++.|+
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555543
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.24 E-value=5.5 Score=52.06 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=13.1
Q ss_pred CCCEEEEEe--cCC---eEEEEec
Q 003591 175 SDTHLGILS--SDS---VFRLFNL 193 (808)
Q Consensus 175 sd~~LvvLt--sD~---~ir~ydl 193 (808)
|..|.|||+ +|| ..||.+-
T Consensus 79 G~~~~vvl~~~s~g~~V~YRFId~ 102 (1201)
T PF12128_consen 79 GQLCCVVLSRKSDGRGVQYRFIDA 102 (1201)
T ss_pred CceeEEEEeecCCCCceeeeeccC
Confidence 346888888 676 3677764
No 58
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.18 E-value=7.9 Score=49.93 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=3.5
Q ss_pred EEEEEec
Q 003591 119 ALLLIGS 125 (808)
Q Consensus 119 ~Lal~G~ 125 (808)
+-+|+|+
T Consensus 25 ~~~i~G~ 31 (1164)
T TIGR02169 25 FTVISGP 31 (1164)
T ss_pred eEEEECC
Confidence 4455554
No 59
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.15 E-value=8.7 Score=46.88 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHH
Q 003591 654 IDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDAL 732 (808)
Q Consensus 654 ~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L 732 (808)
..+.++++.++..+++.+..+.+.+.++++.++...+.+.++++.++. +...+ -.|.+|.+.++. ++..+
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G--------G~~~~~r~~Le~-ei~~l 274 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEG--------GDLFEEREQLER-QLKEI 274 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------chHHHHHHHHHH-HHHHH
Confidence 455566777777777777777777777777777777777777777665 33222 245555556653 67777
Q ss_pred HHHHHHHHHHHHHhhcC
Q 003591 733 HSSIEALRARLRRLTQS 749 (808)
Q Consensus 733 ~~~ie~lk~r~~~~~~~ 749 (808)
...+++.+.++..+...
T Consensus 275 e~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 275 EAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 77777777776665433
No 60
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.05 E-value=18 Score=37.74 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 003591 621 LHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-L 699 (808)
Q Consensus 621 L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L 699 (808)
|.+-.++++ -..+.+-+.+..--..|...+++--..+.+++..+..+......+..+++++....+.+..|++. |
T Consensus 3 f~Rl~~~~~----a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 3 FKRLKTLVK----ANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHH----HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 23334444455555777777777777888888888888888888888888888888888888877 5
Q ss_pred h
Q 003591 700 R 700 (808)
Q Consensus 700 ~ 700 (808)
.
T Consensus 79 ~ 79 (221)
T PF04012_consen 79 A 79 (221)
T ss_pred H
Confidence 5
No 61
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.97 E-value=34 Score=39.35 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=14.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003591 776 RSLMEKLSLVNSENLKKVKLVESALKKQ 803 (808)
Q Consensus 776 ~~~L~~~~~~i~e~~~k~~~~~~~~~~~ 803 (808)
.....+++..+.|.+|..+.+++.|+.+
T Consensus 195 ~~q~~kl~~~~~E~kk~~~~l~~~l~~~ 222 (420)
T COG4942 195 RAQQAKLAQLLEERKKTLAQLNSELSAD 222 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555443
No 62
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=90.97 E-value=0.81 Score=33.50 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=28.0
Q ss_pred CCccceeEEEEecCCCCEEEEEecCCeEEEEe
Q 003591 161 SNVIRTLQVSWHPYSDTHLGILSSDSVFRLFN 192 (808)
Q Consensus 161 ~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~yd 192 (808)
.....|..+.|||. +.+|++-..|++||+||
T Consensus 9 ~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 45668999999999 88999999999999997
No 63
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.89 E-value=6.7 Score=44.69 Aligned_cols=110 Identities=16% Similarity=0.265 Sum_probs=77.6
Q ss_pred CCceEEEEeC-CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec--Ce
Q 003591 51 APKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DG 127 (808)
Q Consensus 51 ~~rnll~~~~-~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~--~~ 127 (808)
..||+|+.-. |..+.+||=+.+ ..-+++.-. .-+|..+..+|.---..|.|+ .+
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g--------------------~p~~s~~~~---~k~Vq~l~wh~~~p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTG--------------------KPKSSITHH---GKKVQTLEWHPYEPSVLLSGSYDGT 310 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCC--------------------Ccceehhhc---CCceeEEEecCCCceEEEeccccce
Confidence 4788888755 888999987651 223334311 357888888888888888888 46
Q ss_pred EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCc
Q 003591 128 LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPE 201 (808)
Q Consensus 128 v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~ 201 (808)
|.+..+...... -+.++++ ..|-++.|||.+..+.++=|.|+++|-||+.... +|.
T Consensus 311 V~l~D~R~~~~s-------~~~wk~~----------g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~v 366 (463)
T KOG0270|consen 311 VALKDCRDPSNS-------GKEWKFD----------GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPV 366 (463)
T ss_pred EEeeeccCcccc-------CceEEec----------cceEEEEecCCCceeEEEecCCceEEeeecCCCC-Cce
Confidence 766666542111 1234443 3689999999999999999999999999997643 454
No 64
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.83 E-value=6.6 Score=44.55 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 771 QISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 771 q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
+...++..+.+....+.++..+++.++..|++
T Consensus 240 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 240 FREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566667777777777777777766654
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.81 E-value=10 Score=40.36 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQ 697 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~ 697 (808)
.+++...+..|+++.|.......-.++..+..+++.+...++....||+.+..+-..+..+++
T Consensus 68 ~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le 130 (237)
T PF00261_consen 68 EAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELE 130 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666655555555555555555555555554444444444444444333333333
No 66
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.38 E-value=16 Score=38.80 Aligned_cols=164 Identities=14% Similarity=0.179 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQS-RLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e-~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
-+...+..|..-|- +.+.+ .-...=+.|...+++.+++|+.+++.|+.-....+ +=..++.+....-+.-|+|+..
T Consensus 16 kv~EG~~~F~~i~~-K~~~~--~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk~~L~e~Rk~IE~~MErFK~ 92 (233)
T PF04065_consen 16 KVQEGVEEFDEIYE-KVESA--TNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEQMERFKV 92 (233)
T ss_pred HHHHHHHHHHHHHH-HHHcc--cCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 34455666654443 22222 23444578889999999999999999998875321 1112455544444445555544
Q ss_pred HhcCCC--C-------CCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcH
Q 003591 699 LRNLPG--A-------HKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQD 769 (808)
Q Consensus 699 L~~l~~--~-------~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (808)
+-+-.+ + ...-+...|++=.+-.+=|+ ..++.|..++|++-+-++.+..+.++. ++. .-..
T Consensus 93 vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~-~~Id~L~~QiE~~E~E~E~L~~~~kKk--------k~~-~~~~ 162 (233)
T PF04065_consen 93 VEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLK-DSIDELNRQIEQLEAEIESLSSQKKKK--------KKD-STKQ 162 (233)
T ss_pred HHHHhcccccchhhhhcccccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccC--------ccC-ccch
Confidence 322110 1 11222334444333333344 477888888888888888887765432 111 1255
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 003591 770 AQISQLRSLMEKLSLVNSENLKKVKLV 796 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k~~~~ 796 (808)
+.+..|+..+...--||.-|..=++.|
T Consensus 163 ~r~~~l~~~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 163 ERIEELESRIERHKFHIEKLELLLRLL 189 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777766554444433
No 67
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.27 E-value=24 Score=36.30 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 003591 769 DAQISQLRSLMEKLSLVNSENLKKVKLVESALK 801 (808)
Q Consensus 769 ~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~ 801 (808)
-.|+..++..+.+....+.|+.-++..+|.-|.
T Consensus 157 t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 157 TQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999998874
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.23 E-value=3.4 Score=51.32 Aligned_cols=182 Identities=19% Similarity=0.233 Sum_probs=103.9
Q ss_pred CCceEEEEeCCceEEEEeCCC-cEEEEEeeccCCC-----CCCcccccC--CceEeec------------C-----CCcc
Q 003591 51 APKNLVAWDGASRLYYWDQNA-QCLHRISVRLGEP-----DPTSILAAF--PSKVMRA------------D-----VKLN 105 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~-~~l~~~~lR~~~~-----~~~~~~~~~--~yk~L~~------------~-----~~l~ 105 (808)
..+.|..+..|..+.+||... -++-+++--.+.+ ||...+.+. .-|+|+. + .+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 467777887799999999975 2233322222222 222111100 0011111 1 1222
Q ss_pred eeeeEEEeCCCCCEEEEEec-----CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC-----
Q 003591 106 FEVSRISINRNGSALLLIGS-----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS----- 175 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~-----~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s----- 175 (808)
--.+++.-||+|+|||.... +.+.|++= +.|. |...-|| ++.++.-|+|||.=
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR-~tWk--------~~~~LvG--------H~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER-GTWK--------VDKDLVG--------HSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEec-CCce--------eeeeeec--------CCCceEEEEeChHHhcccc
Confidence 23678999999999998733 44444443 2222 1111222 23367777777751
Q ss_pred -------C----CEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecC
Q 003591 176 -------D----THLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSD 244 (808)
Q Consensus 176 -------d----~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~ 244 (808)
. .|+.+=.-|.+|-+|+-.. -.|- |..+ +.++..+++|+.++ ++|+||+..-|
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~RPl--~vi~--------~lf~~SI~DmsWsp----dG~~LfacS~D 346 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PRPL--FVIH--------NLFNKSIVDMSWSP----DGFSLFACSLD 346 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCC--CCch--hhhh--------hhhcCceeeeeEcC----CCCeEEEEecC
Confidence 1 2666777799999999744 2232 2222 33556689999998 77999999999
Q ss_pred ccEEEEcccCC--CCCCcChhHHH
Q 003591 245 GSIYILCPVVP--FGSVYKWESIL 266 (808)
Q Consensus 245 GdIYalcP~lP--~~~~~~~~~l~ 266 (808)
|.|+.|. |=+ +|-.++.+.+.
T Consensus 347 GtV~~i~-Fee~ElG~~ls~ee~~ 369 (942)
T KOG0973|consen 347 GTVALIH-FEEKELGVALSEEEIS 369 (942)
T ss_pred CeEEEEE-cchHHhCcccChhhhc
Confidence 9999853 333 35555666554
No 69
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.23 E-value=1.4 Score=44.34 Aligned_cols=86 Identities=10% Similarity=0.209 Sum_probs=52.0
Q ss_pred eEEEeCCCCCEEEEEecCeEEEEE--eCCC---C-CC-----------CCCCceeeEEE------Eecceeeec-cCCcc
Q 003591 109 SRISINRNGSALLLIGSDGLCVMY--LYGR---T-CS-----------SDNKTIICRTV------SVGSQIYFS-SSNVI 164 (808)
Q Consensus 109 ~~i~~s~sG~~Lal~G~~~v~Vv~--LP~~---~-~~-----------~d~~~~~c~t~------~v~~~~~~~-~~~~~ 164 (808)
.-|.-|.+| .|||++.+.|+|+. +|.. . .. .....+++..+ ...+..+.. .....
T Consensus 8 ~~l~WS~Dg-~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~ 86 (173)
T PF12657_consen 8 NALAWSEDG-QLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISSS 86 (173)
T ss_pred cCeeECCCC-CEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccccc
Confidence 346788998 78999999999993 4440 0 00 01111222222 222111000 11223
Q ss_pred ceeEEEEecCC----CCE-EEEEecCCeEEEEeccC
Q 003591 165 RTLQVSWHPYS----DTH-LGILSSDSVFRLFNLAS 195 (808)
Q Consensus 165 ~I~qv~WHP~s----d~~-LvvLtsD~~ir~ydl~~ 195 (808)
.|+++.|-|.+ ..| |.|||+++.|.+|.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 89999999976 345 59999999999999764
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.22 E-value=15 Score=39.12 Aligned_cols=59 Identities=12% Similarity=0.269 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
+.+|.+--+..+++...++..++..+..+...-+.+...+.+....-.++.+|+++.+.
T Consensus 22 l~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555555555555544555555555555555555555555444
No 71
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.22 E-value=3.8 Score=50.22 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 770 AQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
-|++.++..|.+....|.||+.|+..|-.++
T Consensus 629 rq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 629 RQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3788889999999999999999998887654
No 72
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.19 E-value=12 Score=40.62 Aligned_cols=68 Identities=24% Similarity=0.385 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhh
Q 003591 648 PQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEG 726 (808)
Q Consensus 648 ~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~ 726 (808)
+.++..++....++...++.++.+......|+.+|++-+..-+...+|++.|+++. + +|++|-+.+++
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR---P--------AfmdEyEklE~ 232 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVR---P--------AFMDEYEKLEE 232 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---h--------HHHHHHHHHHH
Confidence 34555566667777888888999999999999999999988888899999988643 2 45555555553
No 73
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.11 E-value=17 Score=44.89 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC
Q 003591 730 DALHSSIEALRARLRRLTQSPEGS 753 (808)
Q Consensus 730 ~~L~~~ie~lk~r~~~~~~~~~~~ 753 (808)
..|+.+++++-+++..+++|..+.
T Consensus 420 E~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 420 ERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666666666666666666543
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.06 E-value=2.8 Score=44.85 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNIL 692 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L 692 (808)
+..+.+.|...+..|.+..+.++..++.+++.++...+.+++.++..+++.+.|
T Consensus 36 ~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 36 AAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555444333333333333333333
No 75
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=89.97 E-value=3.9 Score=42.76 Aligned_cols=102 Identities=17% Similarity=0.357 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC
Q 003591 628 FQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAH 706 (808)
Q Consensus 628 l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~ 706 (808)
|+ +|+.+...|++-|.+|...+ .+++.-...|...++.++++......=.+|++.++..-+++..|++.++. +.
T Consensus 113 L~-ey~~~~~svk~~l~~R~~~~-~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~--- 187 (236)
T PF09325_consen 113 LR-EYLRYIESVKEALNRRDKKL-IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFE--- 187 (236)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34 88889988888777776655 55566667778788888777765332356666666666666666666554 22
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 003591 707 KKPLSGAEHALKAELDHFEGVELDALHSSIEAL 739 (808)
Q Consensus 707 ~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~l 739 (808)
...+..++|+++++.+....+++.+...
T Consensus 188 -----~is~~~k~E~~rf~~~k~~d~k~~l~~~ 215 (236)
T PF09325_consen 188 -----EISENIKKELERFEKEKVKDFKSMLEEY 215 (236)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2446788999999876666666665543
No 76
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=89.87 E-value=11 Score=43.23 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=50.0
Q ss_pred eeeeEEEeCCCCCEEEEEecCe-EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC--------C
Q 003591 106 FEVSRISINRNGSALLLIGSDG-LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--------D 176 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~~~-v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s--------d 176 (808)
-+|.-|-.||+|.+||-+...+ +-| |+..++.. |..++. .+-.|..+.|-|.+ +
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~Tlki------Ws~~~~~~--~~~l~~---------Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKI------WSMGQSNS--VHDLQA---------HSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEe------eecCCCcc--hhhhhh---------hccceeeEeecCCCCccCCCcCC
Confidence 4788899999999998876653 322 22111111 212222 22346666666654 5
Q ss_pred CEEEEEecCCeEEEEeccCCCCCCceEEEec
Q 003591 177 THLGILSSDSVFRLFNLASDVMQPEQEYYLQ 207 (808)
Q Consensus 177 ~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~ 207 (808)
..|+--.+|+++|+||+.. +.+.+.|.
T Consensus 423 ~~l~sas~dstV~lwdv~~----gv~i~~f~ 449 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVES----GVPIHTLM 449 (524)
T ss_pred ceEEEeecCCeEEEEEccC----CceeEeec
Confidence 7778888999999999977 45555553
No 77
>PRK12704 phosphodiesterase; Provisional
Probab=89.61 E-value=39 Score=40.20 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 769 DAQISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 769 ~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
++-+++|-..+++ +...|..+.++.+|...+.
T Consensus 153 ~ea~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 184 (520)
T PRK12704 153 EEAKEILLEKVEE--EARHEAAVLIKEIEEEAKE 184 (520)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3335556666633 3455666777777766554
No 78
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.61 E-value=17 Score=47.45 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 670 KVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 670 ~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
....+.+++...++.++++...+.++++.|+
T Consensus 818 ~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~ 848 (1163)
T COG1196 818 SLEQRRERLEQEIEELEEEIEELEEKLDELE 848 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345555555555555555555555544
No 79
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.55 E-value=8.1 Score=48.63 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=33.1
Q ss_pred HHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 641 FELKHHAPQLKQIID-----DQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 641 ~el~rR~~~L~~e~~-----~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
+++..+...|+.++- .-..+++.+.+++.+++++...+.++++....+++.+.+++..
T Consensus 258 e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~te 320 (1074)
T KOG0250|consen 258 EDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTE 320 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 456667766666542 2223444555666666666666666666666666665544433
No 80
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.52 E-value=2.8 Score=49.24 Aligned_cols=129 Identities=15% Similarity=0.270 Sum_probs=79.2
Q ss_pred eeeeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEE
Q 003591 106 FEVSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGI 181 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~----~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~Lvv 181 (808)
-.|+++.--.-|+|||.+-. +.|.|-.|-.+.+. | -| +.+...|+.|.|||.. ++|+|
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-------~--------PF--~kskG~vq~v~FHPs~-p~lfV 583 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-------S--------PF--RKSKGLVQRVKFHPSK-PYLFV 583 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEeccccccc-------C--------ch--hhcCCceeEEEecCCC-ceEEE
Confidence 47889999999999999844 77777777654322 0 11 2344568999999965 56666
Q ss_pred EecCCeEEEEeccCC--------CCCCceEEEeccCCCCCCCCC-C-CcceEEEEecCC---------------CCCCce
Q 003591 182 LSSDSVFRLFNLASD--------VMQPEQEYYLQPVEPGRYRNA-A-SICPVDFSFGGD---------------HLWDRF 236 (808)
Q Consensus 182 LtsD~~ir~ydl~~~--------~~~p~q~~~l~~~~~g~~~~~-~-~~~~vsf~Fg~~---------------~~w~~~ 236 (808)
-|. +.||+||+.+. +..-...+.+++.+.+--.+. . -++.-+.+|++. ..=..|
T Consensus 584 aTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry 662 (733)
T KOG0650|consen 584 ATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY 662 (733)
T ss_pred Eec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc
Confidence 665 67899999761 111111233332111100011 1 245667777742 123689
Q ss_pred EEEEEec-CccEEEEccc
Q 003591 237 SVFVLFS-DGSIYILCPV 253 (808)
Q Consensus 237 tLyiL~~-~GdIYalcP~ 253 (808)
+||...+ ||+++.++--
T Consensus 663 PLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 663 PLFASGSDDGTVIVFHGM 680 (733)
T ss_pred ceeeeecCCCcEEEEeee
Confidence 9999877 5999998874
No 81
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.39 E-value=17 Score=37.94 Aligned_cols=115 Identities=14% Similarity=0.206 Sum_probs=58.4
Q ss_pred eeeEEEeCCCCCEEEEEecCe--EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe-
Q 003591 107 EVSRISINRNGSALLLIGSDG--LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS- 183 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~~~--v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt- 183 (808)
.+..+.++|+|+++++....+ +.++.+.. .. .. +....+ ..+..+.|.|.+. .|++-.
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~--~~-----~~-~~~~~~----------~~~~~~~~s~dg~-~l~~~~~ 176 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKT--YE-----IV-DNVLVD----------QRPRFAEFTADGK-ELWVSSE 176 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCC--Ce-----EE-EEEEcC----------CCccEEEECCCCC-EEEEEcC
Confidence 467889999999998876653 33333211 11 10 111111 1235577877643 443333
Q ss_pred cCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEec-CccEEEE
Q 003591 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL 250 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~-~GdIYal 250 (808)
.|+.|++||+.... ....+.+.. .+.. .....+.+++|.++. -.+|+.+. ++.|+.+
T Consensus 177 ~~~~v~i~d~~~~~--~~~~~~~~~--~~~~--~~~~~~~~i~~s~dg----~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 177 IGGTVSVIDVATRK--VIKKITFEI--PGVH--PEAVQPVGIKLTKDG----KTAFVALGPANRVAVV 234 (300)
T ss_pred CCCEEEEEEcCcce--eeeeeeecc--cccc--cccCCccceEECCCC----CEEEEEcCCCCeEEEE
Confidence 48999999997632 122222221 1111 112345567787632 24676654 4445543
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.37 E-value=5.2 Score=43.67 Aligned_cols=105 Identities=15% Similarity=0.278 Sum_probs=72.5
Q ss_pred CcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceeeEE
Q 003591 71 AQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRT 149 (808)
Q Consensus 71 ~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t 149 (808)
++.+.+.||+.. ...+|.+. .|+.|.+|-|.+=++++.-||-+-. .|.|-.+..+..+ +.-+++|.-
T Consensus 175 ~r~i~vynL~n~---------~te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~-~nFtFkCHR 242 (347)
T KOG0647|consen 175 ERHIAVYNLENP---------PTEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK-DNFTFKCHR 242 (347)
T ss_pred CCcEEEEEcCCC---------cchhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc-CceeEEEec
Confidence 466777788754 34677777 6789999999888887777665443 5666667554222 444566632
Q ss_pred EE--ecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 150 VS--VGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 150 ~~--v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
-. +.+..| .|-.+.||| -..+||+.-+|+++.+||-+.
T Consensus 243 ~~~~~~~~VY-------aVNsi~FhP-~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 243 STNSVNDDVY-------AVNSIAFHP-VHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cCCCCCCceE-------EecceEeec-ccceEEEecCCceEEEecchh
Confidence 11 222233 478899999 678999999999999999654
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=89.26 E-value=8.7 Score=43.76 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=94.7
Q ss_pred CCceEEEEeC-CceEEEEeCCCcEEEEEeeccCC-CCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEe--cC
Q 003591 51 APKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGE-PDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIG--SD 126 (808)
Q Consensus 51 ~~rnll~~~~-~~~l~~w~~~~~~l~~~~lR~~~-~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G--~~ 126 (808)
...|++++.. ++++|+||-... .. +...+ ++...+++.--.- +=..|+-|+......|.| .+
T Consensus 135 Qnp~iVAt~t~~~dv~Vfd~tk~---------~s~~~~~~-~~~Pdl~L~gH~~----eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 135 QNPNIVATKTSSGDVYVFDYTKH---------PSKPKASG-ECRPDLRLKGHEK----EGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred CCCcEEEecCCCCCEEEEEeccC---------CCcccccc-cCCCceEEEeecc----cccccccccccceeEeeccCCC
Confidence 4677888776 999999998541 11 00000 0011222222111 223466666655555554 47
Q ss_pred eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEe
Q 003591 127 GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYL 206 (808)
Q Consensus 127 ~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l 206 (808)
+|++-+|..... ++..+ ++..++ +..+..|-.|.|||..+.-+.-...|+.+-+||+.....+|.....
T Consensus 201 ~i~lwdi~~~~~--~~~~~-------~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~- 269 (422)
T KOG0264|consen 201 TICLWDINAESK--EDKVV-------DPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK- 269 (422)
T ss_pred cEEEEecccccc--CCccc-------cceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-
Confidence 888888875422 21112 222222 3456689999999999999999999999999999764333332221
Q ss_pred ccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 207 QPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 207 ~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
+-+.++-+.+|+|- +.|-|--...||.|+..-+
T Consensus 270 ----------ah~~~vn~~~fnp~---~~~ilAT~S~D~tV~LwDl 302 (422)
T KOG0264|consen 270 ----------AHSAEVNCVAFNPF---NEFILATGSADKTVALWDL 302 (422)
T ss_pred ----------ccCCceeEEEeCCC---CCceEEeccCCCcEEEeec
Confidence 11234667888873 3344444455777776443
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.18 E-value=23 Score=38.83 Aligned_cols=113 Identities=20% Similarity=0.357 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELK----HHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQR 695 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~----rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R 695 (808)
-|+.+.+-+|.+|-..+.+-+.++. .++..++......-..+..+++.+..++..-..|...++.++.+-..|.++
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 3778888888888766666665554 456666666666677788888888888888888888888888888888887
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003591 696 LQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 696 ~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~ 747 (808)
+..+. .....+++.+.. .+..+...+..++..+..+.
T Consensus 246 l~~le--------------~~~~~~~~~~~~-~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 246 LRELE--------------QRLDEEREEYQA-EIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHH--------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------HHHHHHHHHHHH-hhhccchhHHHHHHHHHHHH
Confidence 77754 455566666663 67777777777777766543
No 85
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.18 E-value=34 Score=38.08 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=74.7
Q ss_pred ceeeeEEEeCCCCCEEEEE--ecCeEEEEEeCCCCCCCCCCceeeE--EEEe---cceeeeccCCccceeEEEEecCCCC
Q 003591 105 NFEVSRISINRNGSALLLI--GSDGLCVMYLYGRTCSSDNKTIICR--TVSV---GSQIYFSSSNVIRTLQVSWHPYSDT 177 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~--G~~~v~Vv~LP~~~~~~d~~~~~c~--t~~v---~~~~~~~~~~~~~I~qv~WHP~sd~ 177 (808)
.-...+|.++|+|++|.+. +.-.|.|+.|... +. +... .+.. ++. .........-++.|+|.+.-
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~-----l~~~~~~~~~~g~g~~--~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GS-----LGEVVQTVRHEGSGPN--PDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SE-----EEEEEEEEESEEEESS--TTTTSSTCEEEEEE-TTSSE
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-cc-----cceeeeecccCCCCCc--ccccccccceeEEECCCCCE
Confidence 4567899999999999997 6789999999754 22 1111 1111 110 00122345678999998776
Q ss_pred EEEEEecCCeEEEEeccCCCCCC--ceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEec-CccEEEE
Q 003591 178 HLGILSSDSVFRLFNLASDVMQP--EQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYIL 250 (808)
Q Consensus 178 ~LvvLtsD~~ir~ydl~~~~~~p--~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~-~GdIYal 250 (808)
-+|+-.-.+.|++|+++...... ...+.+. . +..+-.+.|.++ .--+|++.+ ++.|..+
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~---~-------G~GPRh~~f~pd----g~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP---P-------GSGPRHLAFSPD----GKYAYVVNELSNTVSVF 219 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECS---T-------TSSEEEEEE-TT----SSEEEEEETTTTEEEEE
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccc---c-------CCCCcEEEEcCC----cCEEEEecCCCCcEEEE
Confidence 66777777899999998755332 2222221 1 234667888873 345888876 5556554
No 86
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.16 E-value=32 Score=37.71 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=20.7
Q ss_pred CCCC-HHHHHHHHHHhhhhh------------hhHHHHHHHHHHHHHHHHHhhcC
Q 003591 708 KPLS-GAEHALKAELDHFEG------------VELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 708 ~~LS-~aEk~~~~El~~~~~------------~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
.+|| ..|+.+++++..+.. .++..|.+.++.++...+.+.+.
T Consensus 126 ~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~ek 180 (294)
T COG1340 126 SVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEK 180 (294)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 346667666665553 12334445555555554444444
No 87
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=89.14 E-value=2.2 Score=48.22 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=81.0
Q ss_pred eEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec-CeEEEEE
Q 003591 54 NLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMY 132 (808)
Q Consensus 54 nll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~-~~v~Vv~ 132 (808)
+=++|.-|+.|.+=.+.++--.+-++|.+. .+|...-.+ -+|..+..||||-+||--|. .++-|=+
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr------------~im~L~gH~-k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGR------------CIMFLAGHI-KEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCc------------EEEEecccc-cceeeEeECCCceEEeecCCCCcEEEee
Confidence 335666677777777776666666777542 345545665 58999999999999998765 4677778
Q ss_pred eCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 133 LYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 133 LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
|-.+.. .|++- .++.-|-+|.+-|.++..||+-.-||++++|.-..
T Consensus 374 LR~r~~----------ly~ip-------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 374 LRMRSE----------LYTIP-------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred eccccc----------ceecc-------cccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 876522 23332 22346999999998799999999999999998643
No 88
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=89.03 E-value=13 Score=38.93 Aligned_cols=96 Identities=17% Similarity=0.337 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 627 LFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVE-------ERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 627 ~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~-------~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
.|+ .|+.+...|+.-+.+|.+.++.- +.=...|...+.++.++. ++-..+...|+++..+++...++++.+
T Consensus 92 ~L~-ey~r~~~Svk~~~~~R~~~~~~~-~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~i 169 (216)
T cd07627 92 TLD-EYIRSIGSVRAAFAQRQKLWQYW-QSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEV 169 (216)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 88888989999888888666432 222344444555555553 344456666666667777777777665
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003591 700 RNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEA 738 (808)
Q Consensus 700 ~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~ 738 (808)
. ...++||.+++.+....+++.|+.
T Consensus 170 s--------------~~~k~El~rF~~~r~~dfk~~l~~ 194 (216)
T cd07627 170 S--------------ELIKSELERFERERVEDFRNSVEI 194 (216)
T ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 456667777776455445444443
No 89
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.00 E-value=8.3 Score=41.20 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=78.7
Q ss_pred EEEEeC-CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEe
Q 003591 55 LVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYL 133 (808)
Q Consensus 55 ll~~~~-~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~L 133 (808)
+|+.-+ |.-|=+|+... ...|+++. -+ +-.|..|.+.|++++||..|...|.+.+|
T Consensus 12 iLvsA~YDhTIRfWqa~t--------------------G~C~rTiq--h~-dsqVNrLeiTpdk~~LAaa~~qhvRlyD~ 68 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALT--------------------GICSRTIQ--HP-DSQVNRLEITPDKKDLAAAGNQHVRLYDL 68 (311)
T ss_pred EEEeccCcceeeeeehhc--------------------CeEEEEEe--cC-ccceeeEEEcCCcchhhhccCCeeEEEEc
Confidence 344444 77777887754 34566666 22 56899999999999999999999999888
Q ss_pred CCCCC--------C--------C--C-------CCceeeEEEEecc---eeeeccCCccceeEEEEecCCCCEEEEEecC
Q 003591 134 YGRTC--------S--------S--D-------NKTIICRTVSVGS---QIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (808)
Q Consensus 134 P~~~~--------~--------~--d-------~~~~~c~t~~v~~---~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD 185 (808)
..... . | + +..-.||.+-+.. ++.+ ...++|-.|.-||.- ++|++=+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQ-teLis~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQ-TELISGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCc-ceEEeecCC
Confidence 54321 0 0 0 1112356555432 1112 234689999999963 678888999
Q ss_pred CeEEEEeccCC
Q 003591 186 SVFRLFNLASD 196 (808)
Q Consensus 186 ~~ir~ydl~~~ 196 (808)
+.||+||+..+
T Consensus 146 g~irvWDl~~~ 156 (311)
T KOG0315|consen 146 GNIRVWDLGEN 156 (311)
T ss_pred CcEEEEEccCC
Confidence 99999999774
No 90
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.85 E-value=9.5 Score=43.65 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 647 APQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 647 ~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
++.++..+..-+.++.+++.....++.....++.|+.+.+.+++.+.++++.++
T Consensus 349 len~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 349 LENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555556666777777777777777766655
No 91
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=88.85 E-value=7.9 Score=49.20 Aligned_cols=136 Identities=21% Similarity=0.192 Sum_probs=80.9
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec
Q 003591 105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
...|..|.-|++|+.||++-... +.|....+. + |.+--..++.. ...+..+.|||...-.|.++|.
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~---vqLWt~~NY--------H-WYLKqei~~~~--~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR---VQLWTRSNY--------H-WYLKQEIRFSS--SESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC---ceEEEeeCC--------E-EEEEEEEEccC--CCCCCceEECCCCCCEEEEEec
Confidence 56889999999999999988766 444322111 1 22221233322 2245559999999999999999
Q ss_pred CCeEEEEeccC----CCCCCceEEEeccCCCCCC------------C--CC----CCcceEEEEecCCCCCCceEEEEEe
Q 003591 185 DSVFRLFNLAS----DVMQPEQEYYLQPVEPGRY------------R--NA----ASICPVDFSFGGDHLWDRFSVFVLF 242 (808)
Q Consensus 185 D~~ir~ydl~~----~~~~p~q~~~l~~~~~g~~------------~--~~----~~~~~vsf~Fg~~~~w~~~tLyiL~ 242 (808)
++.+..|+..- +...+..+......=.|.. + .. ..-.+++++|++.+. .+.+++
T Consensus 370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~----~~avl~ 445 (928)
T PF04762_consen 370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS----RFAVLT 445 (928)
T ss_pred CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC----eEEEEE
Confidence 88887777653 2111111111110001110 0 00 122578888987431 289999
Q ss_pred cCccEEEEcccCCCCC
Q 003591 243 SDGSIYILCPVVPFGS 258 (808)
Q Consensus 243 ~~GdIYalcP~lP~~~ 258 (808)
.||.|+....-....+
T Consensus 446 ~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 446 SDGSLSIYEWDLKNMW 461 (928)
T ss_pred CCCCEEEEEecCCCcc
Confidence 9999998886555444
No 92
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.82 E-value=13 Score=44.35 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhcCCCCCCCCCCHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHH
Q 003591 678 LEERIDHAVQQHNILEQR-------LQHLRNLPGAHKKPLSGAEHALKAELDHFEG------VELDALHSSIEALRARLR 744 (808)
Q Consensus 678 L~~Rie~a~~~Q~~L~~R-------~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~------~~l~~L~~~ie~lk~r~~ 744 (808)
.++|...+++.+.++.++ +..|+.....+...+++.+...=+|+-.-.+ .++..=+++|..+.++++
T Consensus 180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e 259 (629)
T KOG0963|consen 180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVE 259 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333 3344444456777888877775555544332 244455556666666666
Q ss_pred HhhcCCC
Q 003591 745 RLTQSPE 751 (808)
Q Consensus 745 ~~~~~~~ 751 (808)
++.++-+
T Consensus 260 ~L~~ql~ 266 (629)
T KOG0963|consen 260 QLREQLA 266 (629)
T ss_pred HHHHHHH
Confidence 6655544
No 93
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=88.82 E-value=40 Score=36.84 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=68.4
Q ss_pred eeeeEEEeCCCCCEEEEE--ecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 106 FEVSRISINRNGSALLLI--GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~--G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
..++.+.++|+|+++.+. |...|.|..+-.. +.... ..-..+.+. .......+.|||.+ .+|.|..
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-g~l~~--~~~~~~~~~--------~g~~p~~~~~~pdg-~~lyv~~ 193 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD-GHLVA--QEPAEVTTV--------EGAGPRHMVFHPNQ-QYAYCVN 193 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC-Ccccc--cCCCceecC--------CCCCCceEEECCCC-CEEEEEe
Confidence 356788899999999775 5678999998531 21000 000111211 11235678999854 4555555
Q ss_pred c-CCeEEEEeccCCCC--CCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 184 S-DSVFRLFNLASDVM--QPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 184 s-D~~ir~ydl~~~~~--~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
. +++|++|++..... +..+++...+ .+ +. ...-+.++.|.+++ =.||+.+++.+..+
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~~--~~-~~~~~~~i~~~pdg----~~lyv~~~~~~~I~ 253 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMP--AD--FS-DTRWAADIHITPDG----RHLYACDRTASLIS 253 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCC--Cc--CC-CCccceeEEECCCC----CEEEEecCCCCeEE
Confidence 5 89999999975322 2233333221 10 00 01134567887743 35888876544433
No 94
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=6.5 Score=46.60 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHH
Q 003591 652 QIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELD 730 (808)
Q Consensus 652 ~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~ 730 (808)
.++....+++..+.+++++++.....|...+++.+..-++|..+++.+++ +. ...-...+=++.-.++..++ .++.
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--~~~~~~rei~~~~~~I~~L~-~~L~ 491 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR--DKVRKDREIRARDRRIERLE-KELE 491 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHH-HHHH
Confidence 44456677888888899999998999999999999999999999999776 33 11111222222444555665 3666
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003591 731 ALHSSIEALRARLRRLT 747 (808)
Q Consensus 731 ~L~~~ie~lk~r~~~~~ 747 (808)
.-..++|+|+.+++++.
T Consensus 492 e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 492 EKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777777765
No 95
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=88.76 E-value=38 Score=37.01 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=67.0
Q ss_pred eeeeEEEeCCCCCEEEEEe--cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 106 FEVSRISINRNGSALLLIG--SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G--~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
..+.+|.++|+|++|.+.+ ...|.|..+-.. +. ... + ....+ .......+.+||.+.--+|.-.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~-g~-~~~---~--~~~~~-------~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD-GI-PVA---P--IQIIE-------GLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC-CC-CCC---c--eeecc-------CCCcccEeEeCCCCCEEEEeeC
Confidence 4678999999999999875 578888887421 11 000 0 11000 0112456778887655556666
Q ss_pred cCCeEEEEeccCCCCC-C--ceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEec-CccEEE
Q 003591 184 SDSVFRLFNLASDVMQ-P--EQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYI 249 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~-p--~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~-~GdIYa 249 (808)
.++.|++|++...... + ...+.. .. +..+..+.|.++ .=.||+.+. ++.|..
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~---~~-------g~~p~~~~~~pd----g~~lyv~~~~~~~v~v 201 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTT---VE-------GAGPRHMVFHPN----QQYAYCVNELNSSVDV 201 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceec---CC-------CCCCceEEECCC----CCEEEEEecCCCEEEE
Confidence 7799999999763321 0 001111 01 223445677763 347888877 666654
No 96
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.68 E-value=14 Score=48.32 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=10.8
Q ss_pred EEEeCCCCCEEEEEecCe
Q 003591 110 RISINRNGSALLLIGSDG 127 (808)
Q Consensus 110 ~i~~s~sG~~Lal~G~~~ 127 (808)
.+.++....+=||+|+.|
T Consensus 17 ~~~i~f~~~~t~IvGPNG 34 (1163)
T COG1196 17 PTEINFSPGFTAIVGPNG 34 (1163)
T ss_pred CeeeecCCCCeEEECCCC
Confidence 445556666666766653
No 97
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.68 E-value=10 Score=43.55 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003591 711 SGAEHALKAELDHFEGVELDALHSSIEALRARLRR 745 (808)
Q Consensus 711 S~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~ 745 (808)
.-+=+++..|++.-+ ++++.|++.++.|+.+++.
T Consensus 329 ~g~l~kl~~eie~kE-eei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 329 PGKLEKLKSEIELKE-EEIKALQSNIDELHKQLRK 362 (622)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHh
Confidence 334566777777644 5889999999999988776
No 98
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.59 E-value=7.8 Score=37.42 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=68.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAE 720 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~E 720 (808)
.+...+...++.+++.|...+.+++++-..=--......+.|..+++....+...+..|+.-.......|...|..|..+
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q 99 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ 99 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44556667777777777777777666643222222233455666666666666666665553334555677889999988
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 003591 721 LDHFEGVELDALHSSIEALRARLRRLTQ 748 (808)
Q Consensus 721 l~~~~~~~l~~L~~~ie~lk~r~~~~~~ 748 (808)
=..|.. ++..+..|++.|..+=+-+..
T Consensus 100 k~~le~-e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 100 KEQLEK-ELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 888884 888888888888876444433
No 99
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=88.41 E-value=50 Score=37.39 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
..++.|+..|..+.++-..++..+...-+.+++..+.|.-+-.+++.+++.|+++-..|.+
T Consensus 147 q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~ 207 (499)
T COG4372 147 QDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT 207 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666665556666666666666666666666666666666666666666543
No 100
>PRK11281 hypothetical protein; Provisional
Probab=88.27 E-value=4.4 Score=52.11 Aligned_cols=31 Identities=16% Similarity=-0.022 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
=.+|-..|.++.+.+..+.++-..++..|.+
T Consensus 287 N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~ 317 (1113)
T PRK11281 287 NLQLSQRLLKATEKLNTLTQQNLRVKNWLDR 317 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555555443
No 101
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.23 E-value=6.1 Score=45.12 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 652 QIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 652 ~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
.+++.|...+....++.+.+......+..+-.-+..+-.++..+++++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444344444444444444443
No 102
>PRK02224 chromosome segregation protein; Provisional
Probab=88.19 E-value=6.8 Score=49.32 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=5.5
Q ss_pred HHHHhHHHHHHHH
Q 003591 642 ELKHHAPQLKQII 654 (808)
Q Consensus 642 el~rR~~~L~~e~ 654 (808)
.+...++.++.++
T Consensus 184 ~~~~~~~~~~~~l 196 (880)
T PRK02224 184 DQRGSLDQLKAQI 196 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 103
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=88.15 E-value=28 Score=38.16 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=79.5
Q ss_pred CCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEE
Q 003591 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV 130 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~V 130 (808)
..|+++....|+.|++||.-. +...+.+. .|- -=|-...++|+|+++|--|=...+.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~T--------------------tnK~haip--l~s-~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFT--------------------TNKVHAIP--LPS-SWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred CcCeEEeeccCCeEEEEEccc--------------------ccceeEEe--cCc-eeEEEEEECCCCCeEEecCcCceeE
Confidence 478888887899999999954 11222232 121 2366788999999999999876655
Q ss_pred E-EeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccC
Q 003591 131 M-YLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPV 209 (808)
Q Consensus 131 v-~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~ 209 (808)
| .|-.+. + ++ .... .-.|. ....-+-.+.|-+ |.||++=.-|.+.-+|||... .+.-.++
T Consensus 123 iy~ls~~d-~-~g-~~~v-~r~l~-------gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g----~~~~~f~-- 183 (343)
T KOG0286|consen 123 IYPLSTRD-A-EG-NVRV-SRELA-------GHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETG----QQTQVFH-- 183 (343)
T ss_pred EEeccccc-c-cc-ccee-eeeec-------CccceeEEEEEcC--CCceEecCCCceEEEEEcccc----eEEEEec--
Confidence 5 443221 1 11 1111 11111 1123456666666 899999999999999999763 2232222
Q ss_pred CCCCCCCCCCcceEEEEecC
Q 003591 210 EPGRYRNAASICPVDFSFGG 229 (808)
Q Consensus 210 ~~g~~~~~~~~~~vsf~Fg~ 229 (808)
| -..++.+.++.|
T Consensus 184 --G-----H~gDV~slsl~p 196 (343)
T KOG0286|consen 184 --G-----HTGDVMSLSLSP 196 (343)
T ss_pred --C-----CcccEEEEecCC
Confidence 0 123677888877
No 104
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.08 E-value=27 Score=43.50 Aligned_cols=125 Identities=17% Similarity=0.154 Sum_probs=70.9
Q ss_pred eeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecC
Q 003591 107 EVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G-~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD 185 (808)
.|..+..+ +|.+|+..| +..|.|..+...........+ ++ +. .....|..+.|.|.+ ..|++-..|
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l--~~--~~-------gh~~~i~~v~~s~~~-~~lasgs~D 729 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL--HS--FM-------GHTNVKNFVGLSVSD-GYIATGSET 729 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce--EE--Ec-------CCCCCeeEEEEcCCC-CEEEEEeCC
Confidence 56677776 456665554 457888887643211111111 11 11 122356778888874 688999999
Q ss_pred CeEEEEeccCCCCCCceEEEeccCCC--CCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEE
Q 003591 186 SVFRLFNLASDVMQPEQEYYLQPVEP--GRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (808)
Q Consensus 186 ~~ir~ydl~~~~~~p~q~~~l~~~~~--g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYal 250 (808)
+.+++|+.... .|...+.+..... |......+..+.++||.+. .-.|.....+|.|..+
T Consensus 730 ~~v~iw~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~----~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 730 NEVFVYHKAFP--MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ----SSTLVAANSTGNIKIL 790 (793)
T ss_pred CEEEEEECCCC--CceEEEecccCCcccccccCCCCcEEEEEEEcCC----CCeEEEecCCCcEEEE
Confidence 99999997542 2333333321111 1111111234778999873 3467788889988764
No 105
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.74 E-value=14 Score=35.69 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=56.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQ---ENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRL 696 (808)
Q Consensus 620 ~L~~a~~~l~---e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~ 696 (808)
-|++|+..+. ++.-.....++.+|..|++.|-..+++|.+-....++++..+++.-+.+..-++.+...=..|..++
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444442 1233445566778888888888888888888888888888888777777777777777777777766
Q ss_pred HHHh
Q 003591 697 QHLR 700 (808)
Q Consensus 697 ~~L~ 700 (808)
..|.
T Consensus 120 ~~ie 123 (126)
T PF07889_consen 120 DEIE 123 (126)
T ss_pred HHHh
Confidence 6553
No 106
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.69 E-value=14 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.6
Q ss_pred CCCceEEEEEcCC-ceEEEccccc
Q 003591 470 LMQERIYIVHDGG-IDSVVLHFLP 492 (808)
Q Consensus 470 ~~~~r~~v~H~~G-Vh~VsL~Wv~ 492 (808)
-.+.-|.+.|.+| |+|..-.|+.
T Consensus 563 ~~~~~F~l~HyaG~V~Y~~~~WL~ 586 (1930)
T KOG0161|consen 563 KAEAHFALVHYAGTVDYNVDGWLE 586 (1930)
T ss_pred cchhhhheeeecceeccCccchhh
Confidence 4566789999999 9998888998
No 107
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.66 E-value=54 Score=41.88 Aligned_cols=39 Identities=33% Similarity=0.381 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 663 EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 663 ~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
..++.+.+|+++...-++.+..+.++-.+|..|++.|+.
T Consensus 1595 ~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1595 LAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666777888888888775
No 108
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=87.66 E-value=30 Score=35.87 Aligned_cols=154 Identities=13% Similarity=0.185 Sum_probs=87.9
Q ss_pred HHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 632 YVEYAHKV----HFELKHHAPQLKQIIDDQHARLSEAQNKILKVE--------ERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 632 ~~~~~~~v----~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~--------~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
|....+++ ++-|-.|++.-+.-.++=.++....-++.+.+. ..-++|.+.|+...++.+++.+|++++
T Consensus 11 YY~amEkvG~hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~v 90 (201)
T PF11172_consen 11 YYSAMEKVGVHKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAV 90 (201)
T ss_pred HHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 333555565555555555555666666666655 456888899999999999999999997
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHHHHHHHhhcCCCCCCCCc--cccccCcccCcH
Q 003591 700 RNLPGAHKKPLSGAEHALKAELDHFEGV--------ELDALHSSIEALRARLRRLTQSPEGSPGNQ--QRQTLGKNYVQD 769 (808)
Q Consensus 700 ~~l~~~~~~~LS~aEk~~~~El~~~~~~--------~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 769 (808)
..+..+ -=..|-+||+.+... ++...+.+..+|-.-|++...++... ... .+--.=|--|..
T Consensus 91 E~Va~A-------LF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PV-L~~~~D~vL~LKHNLNA 162 (201)
T PF11172_consen 91 EDVADA-------LFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKMQPV-LAAFRDQVLYLKHNLNA 162 (201)
T ss_pred HHHHHH-------HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHhccccH
Confidence 764321 125789999988863 34445555555555555554444321 000 000001333555
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Q 003591 770 AQISQLRSLMEKLSLVNSENLKKV 793 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k~ 793 (808)
.-|..|+.-+..++..|.-+.+.+
T Consensus 163 ~AI~sL~~e~~~~~~di~~Li~~m 186 (201)
T PF11172_consen 163 QAIASLQGEFSSIESDISQLIKEM 186 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666655554444444433
No 109
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=87.64 E-value=23 Score=34.39 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 003591 728 ELDALHSSIEALRARLRRLTQ 748 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r~~~~~~ 748 (808)
+++.|..+|++|.++++++..
T Consensus 110 dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 110 DVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 555566667777766666554
No 110
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.54 E-value=20 Score=48.42 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 769 DAQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 769 ~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
+.|+..++..|+++...+.|+.|+.+.+|+.|
T Consensus 1019 e~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 1019 EQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555
No 111
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.44 E-value=30 Score=36.07 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=42.3
Q ss_pred eeeEEEeCCCCCEEEEEec--CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE-e
Q 003591 107 EVSRISINRNGSALLLIGS--DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL-S 183 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~--~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL-t 183 (808)
.++.+.++|+|++|.+.+. ..|.++.+... . . .+.++.+ ..+..+.|||.+. .+++- .
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~-----~-~~~~~~~----------~~~~~~~~~~~g~-~l~~~~~ 92 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--E-----V-IGTLPSG----------PDPELFALHPNGK-ILYIANE 92 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCC--c-----E-EEeccCC----------CCccEEEECCCCC-EEEEEcC
Confidence 3567889999998866654 45666655321 1 1 1111111 1245678998865 34333 3
Q ss_pred cCCeEEEEeccC
Q 003591 184 SDSVFRLFNLAS 195 (808)
Q Consensus 184 sD~~ir~ydl~~ 195 (808)
.|+.|++||+..
T Consensus 93 ~~~~l~~~d~~~ 104 (300)
T TIGR03866 93 DDNLVTVIDIET 104 (300)
T ss_pred CCCeEEEEECCC
Confidence 579999999965
No 112
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.39 E-value=3.1 Score=50.06 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEE
Q 003591 50 GAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLC 129 (808)
Q Consensus 50 ~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~ 129 (808)
+..|+||.|..|..+=+|.=...+.. ..|+ .++ +.|--+.+||-|-|-|-.|....+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~-----------------V~y~-----GH~-~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCL-----------------VIYK-----GHL-APVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred ccccceeeccCCcceeeeecccceeE-----------------EEec-----CCC-cceeeEEecCCceEEEecCCCcee
Confidence 35788999998888888887542211 2344 222 455666699999999999877776
Q ss_pred EEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCC
Q 003591 130 VMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDV 197 (808)
Q Consensus 130 Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~ 197 (808)
.| |+. |. +.++. .|. .+-..|-.|.|||-+. .+.+=.+|-++|+||+..+.
T Consensus 518 --rL---Ws~-d~------~~PlR--ifa--ghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 518 --RL---WST-DH------NKPLR--IFA--GHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGN 568 (707)
T ss_pred --ee---eec-cc------CCchh--hhc--ccccccceEEECCccc-ccccCCCCceEEEEEcCCCc
Confidence 33 433 21 12221 222 2345789999999871 11222789999999998743
No 113
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.39 E-value=6 Score=43.87 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 003591 634 EYAHKVHFELKHHAPQLKQII 654 (808)
Q Consensus 634 ~~~~~v~~el~rR~~~L~~e~ 654 (808)
..++.+..++..+-..|+.++
T Consensus 168 ~~l~~~~~~l~~~~~~L~~e~ 188 (312)
T smart00787 168 ELLNSIKPKLRDRKDALEEEL 188 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 114
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=87.07 E-value=12 Score=38.22 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=44.2
Q ss_pred eeeEEEeCCCCCEEEEEecCe----EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE
Q 003591 107 EVSRISINRNGSALLLIGSDG----LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~~~----v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
.+..|..||+|++||+.|-.+ |.+..+... +.+.-. ....+..+.|-|.|.--+..-
T Consensus 102 ~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----------~~i~~~--------~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 102 PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----------KKISTF--------EHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred CceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----------EEeecc--------ccCcEEEEEEcCCCCEEEEEE
Confidence 455799999999999998543 444443311 111111 112367889999985444444
Q ss_pred e-----cCCeEEEEecc
Q 003591 183 S-----SDSVFRLFNLA 194 (808)
Q Consensus 183 t-----sD~~ir~ydl~ 194 (808)
+ .||.+++|+..
T Consensus 163 t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccceeccccEEEEEec
Confidence 4 49999999985
No 115
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.07 E-value=18 Score=43.42 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhh
Q 003591 673 ERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFE 725 (808)
Q Consensus 673 ~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~ 725 (808)
+.-+.+.++++.+.+.|+++.+.++.|+. .|+.-++.|..|.
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~~-----------dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLRK-----------DEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 44566667777777777777777777663 5555555555544
No 116
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=87.06 E-value=12 Score=44.22 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 621 LHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE 673 (808)
Q Consensus 621 L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~ 673 (808)
+...+.+|. ++.++.|.+.. -..-+.|...+++++++|+.+++.|+.=..
T Consensus 17 v~Egve~Fd-~i~ek~~~~~n--~sqkeK~e~DLKkEIKKLQRlRdQIKtW~s 66 (575)
T KOG2150|consen 17 VDEGVEIFD-EIYEKLHSANN--VSQKEKLESDLKKEIKKLQRLRDQIKTWQS 66 (575)
T ss_pred hhhhHHHHH-HHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445566666 44456666543 123467888888899999999999887664
No 117
>PLN00181 protein SPA1-RELATED; Provisional
Probab=86.81 E-value=47 Score=41.45 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=66.7
Q ss_pred eeeeEEEeCCC-CCEEEEEecC-eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 106 FEVSRISINRN-GSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 106 f~i~~i~~s~s-G~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
..|..+..++. +++||..+.. .|.|-.+... . . .. .+ ..+...|..+.|||..+..|++-.
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~-----~-~~--~~-------~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARS--Q-----L-VT--EM-------KEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--e-----E-EE--Ee-------cCCCCCEEEEEEcCCCCCEEEEEc
Confidence 35777888764 6777776644 4444444321 0 1 11 11 123457999999998888899999
Q ss_pred cCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEE
Q 003591 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYal 250 (808)
.|++||+||+.... ....+. . ...+.+++|.+. +...|.+-..||.|+..
T Consensus 596 ~Dg~v~iWd~~~~~--~~~~~~--~----------~~~v~~v~~~~~---~g~~latgs~dg~I~iw 645 (793)
T PLN00181 596 DDGSVKLWSINQGV--SIGTIK--T----------KANICCVQFPSE---SGRSLAFGSADHKVYYY 645 (793)
T ss_pred CCCEEEEEECCCCc--EEEEEe--c----------CCCeEEEEEeCC---CCCEEEEEeCCCeEEEE
Confidence 99999999996521 111221 0 113556677442 22345556678888774
No 118
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.80 E-value=59 Score=38.63 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003591 677 RLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 677 ~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~ 747 (808)
.+.+.++.+...-+.|...++.|+. +.. ...++.+.+ +.|+.+.. +...++..++.++.-.+.+.
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~-l~~~i~~~~----~~L~~l~~-~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLN-LVMDIEDPS----AALNKLNT-AAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444444443 221 112333333 22444442 55666677777666666653
No 119
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.75 E-value=48 Score=35.41 Aligned_cols=68 Identities=26% Similarity=0.329 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 003591 728 ELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESA 799 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~ 799 (808)
++.++.+.-|+++..++.+.|.-.- =.+....+.+.-++=...|-.++++...+-+|+-.|-.++||.
T Consensus 99 dlsqt~aikeql~kyiReLEQaNDd----LErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesv 166 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELEQANDD----LERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESV 166 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccH----HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555555554443210 0011112445334446677777777777777777777777665
No 120
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.68 E-value=31 Score=33.23 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=79.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELD 722 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~ 722 (808)
+......+.....+...++..+++.++...........+|++=..+|....+.+..||. |+.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~------------------e~~ 69 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLRE------------------ELQ 69 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------------HHH
Confidence 44455566666666666666666766666666666677777766666666666665552 333
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 003591 723 HFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALK 801 (808)
Q Consensus 723 ~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~ 801 (808)
.+. .++..|+...++++..+...... -..|...|+.-+.+.-.+|.|+..+=++|-.-|.
T Consensus 70 ~~~-~~~~~l~~~~~~a~~~l~~~e~s------------------w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 70 ELQ-QEINELKAEAESAKAELEESEAS------------------WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 25566666666666666442222 4567888888888888888888888777755443
No 121
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.39 E-value=13 Score=37.35 Aligned_cols=71 Identities=20% Similarity=0.363 Sum_probs=51.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEER--QSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHAL 717 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~--~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~ 717 (808)
|...+..|+.++.....+...++.++..+... .+.|.+.++.+.+.-+.|.+|++.|+. ...+.|..|+.-
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~----~~~~vs~ee~~~ 149 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS----GSKPVSPEEKEK 149 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCCHHHHHH
Confidence 44445556666666666666666667777653 567889999999999999999999994 445588877763
No 122
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=86.39 E-value=52 Score=37.92 Aligned_cols=107 Identities=12% Similarity=0.213 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 003591 675 QSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGS 753 (808)
Q Consensus 675 ~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~ 753 (808)
..+|.+.-+.+..+=+.|..=++.||+ +..-+.+|+-..=+...+|+...+ .+++.|+.-|+..|..|++++++.=-.
T Consensus 212 k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~-keL~~m~~~i~~eKP~WkKiWE~EL~~ 290 (426)
T smart00806 212 KKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETAR-KELKKMEEYIDIEKPIWKKIWEAELDK 290 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 456666666666666666677777777 544688888888888889999887 489999999999999999888873111
Q ss_pred CCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 754 PGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 754 ~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
.|-+ |.-|.=+..++.|+..-++.+++-+
T Consensus 291 ------------VcEE------qqfL~lQedL~~DL~dDL~ka~eTf 319 (426)
T smart00806 291 ------------VCEE------QQFLTLQEDLIADLKEDLEKAEETF 319 (426)
T ss_pred ------------HHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 3445555566666666655555444
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.32 E-value=6 Score=45.80 Aligned_cols=69 Identities=17% Similarity=0.384 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003591 666 NKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLR 744 (808)
Q Consensus 666 e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~ 744 (808)
.++.++....+.|.++-+++++|+..+.+|++. |.. +.++..+|.+.++. +...++..+.+|+.|++
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~-----------~~~~~~~~~~ql~~-~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS-----------ETQELTKEIEQLKS-ERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----------hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 333344444455555555556666666666666 442 33555666666664 55667777777777765
Q ss_pred Hh
Q 003591 745 RL 746 (808)
Q Consensus 745 ~~ 746 (808)
-.
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
Confidence 43
No 124
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.29 E-value=13 Score=49.33 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHHHhhcC
Q 003591 681 RIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEG------VELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 681 Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~------~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
.+..++.+...+.+++..+.+ -...+.++||+.| +...++.+.. .++..++.++..+++.++.+.+.
T Consensus 405 el~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEe--Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 405 ALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADN--AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333343444444444444 2345669999988 4455555553 23444555555555555444443
No 125
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=86.29 E-value=11 Score=39.50 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LR 700 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~ 700 (808)
.+-..++.-...|..-+++--..|.+++..+..+......+..+++++..+.+...+|... |.
T Consensus 17 ~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 17 ALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555555666666666666666677777777777777777777666 54
No 126
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=86.15 E-value=3.2 Score=46.83 Aligned_cols=129 Identities=13% Similarity=0.219 Sum_probs=86.9
Q ss_pred ccc-cCCCCCccccccc-ccCCCCCCCCCCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCC
Q 003591 25 EWV-PLQKHPVFSAPDA-VRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADV 102 (808)
Q Consensus 25 ~w~-~L~~hpiF~~~~~-~~~~~~~~~~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~ 102 (808)
-|+ .+++-.+|+.-.. .-.+.+-. ..---|++|.+|+.|-+||-..+ .+=++|. -
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~--------------------kee~vL~--G 220 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMP--------------------KEERVLR--G 220 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEeccCC--------------------chhheec--c
Confidence 366 7777777776642 11111111 12223567777999999998541 1223443 4
Q ss_pred CcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE
Q 003591 103 KLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 103 ~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
+ ..+|+.+-=-|+-.++|..|..+ .|.|-+..+. .+.| + .+. .+..|.++.|.|.+ .-|+.+
T Consensus 221 H-gwdVksvdWHP~kgLiasgskDn--lVKlWDprSg----~cl~---t----lh~---HKntVl~~~f~~n~-N~Llt~ 282 (464)
T KOG0284|consen 221 H-GWDVKSVDWHPTKGLIASGSKDN--LVKLWDPRSG----SCLA---T----LHG---HKNTVLAVKFNPNG-NWLLTG 282 (464)
T ss_pred C-CCCcceeccCCccceeEEccCCc--eeEeecCCCc----chhh---h----hhh---ccceEEEEEEcCCC-CeeEEc
Confidence 4 58899999999999999999988 6666543222 1222 1 222 34469999999999 999999
Q ss_pred ecCCeEEEEecc
Q 003591 183 SSDSVFRLFNLA 194 (808)
Q Consensus 183 tsD~~ir~ydl~ 194 (808)
..|..+++||+.
T Consensus 283 skD~~~kv~DiR 294 (464)
T KOG0284|consen 283 SKDQSCKVFDIR 294 (464)
T ss_pred cCCceEEEEehh
Confidence 999999999997
No 127
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.15 E-value=12 Score=44.35 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVESALK 801 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~ 801 (808)
...|++.+.++.....|...+++.++..|+
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 344455555555555555455554444443
No 128
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.14 E-value=20 Score=44.88 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 003591 620 TLHQYFNLFQENYVEYAHKV------------------HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER----QSR 677 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v------------------~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~----~e~ 677 (808)
...+.++.+..+|-..+|.. ..++.+.++.++.+++.-...+..+.+++..+... ...
T Consensus 705 ~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~ 784 (1174)
T KOG0933|consen 705 AQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKAN 784 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 34556666666666666655 33455555555555555555556666666665532 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003591 678 LEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 678 L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
=..|+.++...-+.+.+|++.
T Consensus 785 re~rlkdl~keik~~k~~~e~ 805 (1174)
T KOG0933|consen 785 RERRLKDLEKEIKTAKQRAEE 805 (1174)
T ss_pred hHhHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444
No 129
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.14 E-value=25 Score=44.58 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 003591 645 HHAPQLKQIIDDQHARLSEAQNKILKVEER-------QSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHAL 717 (808)
Q Consensus 645 rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~-------~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~ 717 (808)
+|++.|+.+-++-.++...++...+.|.+. +..-.+-|+.+...+....+++.++++-.. .+|+.
T Consensus 1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~-------~aE~~- 1613 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETA-------AAEKL- 1613 (1758)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHH-
Confidence 355666666666555555555555555532 233334455555556666666666554211 23443
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHH
Q 003591 718 KAELDHFEGVELDALHSSIEALRAR 742 (808)
Q Consensus 718 ~~El~~~~~~~l~~L~~~ie~lk~r 742 (808)
+.... .++..|+.++|.||.+
T Consensus 1614 ---~~~a~-q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1614 ---ATSAT-QQLGELETRMEELKHK 1634 (1758)
T ss_pred ---HHHHH-HHHHHHHHHHHHHHHH
Confidence 22222 3555666666666655
No 130
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.99 E-value=18 Score=46.72 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhh-hHHHHHHHHHH
Q 003591 660 RLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGV-ELDALHSSIEA 738 (808)
Q Consensus 660 ~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~-~l~~L~~~ie~ 738 (808)
+|.+..++++.+..++.+....++++.+.+..|.++++-|+ .+..||+ .+.++.+++.+. ..+.|..+|-.
T Consensus 273 ~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~-----~S~~Lg~---~L~~Q~~~LP~~~~~~~l~~~IAd 344 (1109)
T PRK10929 273 ALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLG-----VSNALGE---ALRAQVARLPEMPKPQQLDTEMAQ 344 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHH---HHHHHHHhCCCCcccchhHHHHHH
Confidence 34455556666666666777777777777777777777655 5566664 444445554431 23455555554
Q ss_pred HHHHHHHhhcCCCCCC-CCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 003591 739 LRARLRRLTQSPEGSP-GNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKL 795 (808)
Q Consensus 739 lk~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~ 795 (808)
++-+.=.+.++...-. ..+... .....++++|.+.+.+.|+...+++.++.+..+.
T Consensus 345 lRl~~f~~~q~~~~l~~i~~~~~-~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~ 401 (1109)
T PRK10929 345 LRVQRLRYEDLLNKQPQLRQIRQ-ADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDT 401 (1109)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHh-hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4422111111111100 000011 1123478898999988888888887777766443
No 131
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.99 E-value=11 Score=43.63 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 003591 675 QSRLEERIDHAVQ---QHNILEQRLQHLRNLPGAHKKPLSGAEHAL 717 (808)
Q Consensus 675 ~e~L~~Rie~a~~---~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~ 717 (808)
.|.|+++++.+.. ...++..|+..|....+...-++.-.|+-|
T Consensus 413 EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~ 458 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYW 458 (508)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhcccccee
Confidence 3555555554442 234455555554442222323444444444
No 132
>PRK00106 hypothetical protein; Provisional
Probab=85.76 E-value=67 Score=38.40 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 770 AQISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
+-+.+|-..+++ +...|..+.++.+|...+.
T Consensus 169 eak~~l~~~~~~--~~~~~~~~~i~~~e~~a~~ 199 (535)
T PRK00106 169 EAREIILAETEN--KLTHEIATRIREAEREVKD 199 (535)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 335555555533 3445666667777666554
No 133
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=11 Score=40.31 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=32.2
Q ss_pred CCccceeEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 003591 161 SNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (808)
Q Consensus 161 ~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~ 196 (808)
.++..|-++.|||....++.--..|+++|+||+...
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 356789999999999999999999999999998664
No 134
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.61 E-value=15 Score=44.60 Aligned_cols=83 Identities=25% Similarity=0.300 Sum_probs=51.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccc-------C--cc-cCcHHHHHHHHHHHHHhhhhhH
Q 003591 718 KAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTL-------G--KN-YVQDAQISQLRSLMEKLSLVNS 787 (808)
Q Consensus 718 ~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~-------~--~~-~~~~~q~~~l~~~L~~~~~~i~ 787 (808)
.+||++++.-+...|+.-|+..+..++.++....-...+...... | .. .+-+. +..+.+.+++..+..+
T Consensus 296 e~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~-~d~~i~k~keea~srk 374 (660)
T KOG4302|consen 296 EKEVDRLEQLKASNMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLEN-IDNLIKKYKEEALSRK 374 (660)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 388888886555567777777777777776665433211111111 2 11 12233 5567777888888888
Q ss_pred HHHHHHHHHHHHHh
Q 003591 788 ENLKKVKLVESALK 801 (808)
Q Consensus 788 e~~~k~~~~~~~~~ 801 (808)
+..++++.-+++..
T Consensus 375 ~il~~ve~W~sa~E 388 (660)
T KOG4302|consen 375 EILERVEKWESACE 388 (660)
T ss_pred HHHHHHHHHHHhhH
Confidence 88899888887764
No 135
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.40 E-value=35 Score=34.68 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 676 SRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
+...+|++.+....+++.+++..++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666655555
No 136
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=85.31 E-value=21 Score=37.38 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-
Q 003591 647 APQLKQIIDDQHARLSEAQNKILKVEER-----------------QSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKK- 708 (808)
Q Consensus 647 ~~~L~~e~~~Ql~~L~~l~e~i~~l~~~-----------------~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~- 708 (808)
++.|++|++....++.+...-++.+... .+.+..+-..+++++.+|.+-+++|+++...+..
T Consensus 26 L~~Lk~Ef~hHqeKi~eY~~LL~~~~~~~~~~~N~i~~~~~~~~k~~~~~~k~~~Lk~k~r~i~~~~drL~r~~~~g~~~ 105 (214)
T PF06401_consen 26 LDKLKEEFQHHQEKIDEYNSLLETLSRTEEIHENSISPNEMNPEKEEQLHEKHNELKEKHREINDGYDRLRRVSHQGPNS 105 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSS---S-TTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4567778887777777777766666642 1235678888999999999999999874311111
Q ss_pred --CCCHH--HHHH---------HHHHhhhhhhhHHHHHHHHHHHHHHHH---HhhcCCCCCCCCccccccC-cccCcHHH
Q 003591 709 --PLSGA--EHAL---------KAELDHFEGVELDALHSSIEALRARLR---RLTQSPEGSPGNQQRQTLG-KNYVQDAQ 771 (808)
Q Consensus 709 --~LS~a--Ek~~---------~~El~~~~~~~l~~L~~~ie~lk~r~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~q 771 (808)
+.++- -.-| .+||.++.+ +|.+..++|+.++---+ ...++-+ +-...| ...+...
T Consensus 106 ~~eF~epkV~~LW~~A~~~nFT~~ELeSlke-EL~HfE~rl~K~~H~~~el~~~~~k~~------~ve~~g~~~~~~~~- 177 (214)
T PF06401_consen 106 DKEFIEPKVQGLWKLAQNANFTEDELESLKE-ELKHFEKRLEKHRHYQEELELSHEKLK------HVESLGDEEHFDRK- 177 (214)
T ss_dssp S-SSSSTTHHHHHHHHCTTT--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTSSTTTHHHH-
T ss_pred ccccccHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhcCcHHHhhhh-
Confidence 12111 1112 245555553 66666666554432211 1111100 000012 2222211
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
+.-.+.+-+.|+++..||+.+..-|++
T Consensus 178 ----~e~~~~leek~Kk~~~KV~Kl~~dLe~ 204 (214)
T PF06401_consen 178 ----SEKYKTLEEKIKKLGRKVKKLHQDLES 204 (214)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344667788888888877777665
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.30 E-value=7.7 Score=47.61 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=46.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELD 722 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~ 722 (808)
|++=+++|+.|++.-...=++++..+..+......+..=+..++...++|..|+..|-+--..-.--|...||+..+|.+
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666655544455666666666655556666666777777777777777554221223344556666555544
No 138
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.08 E-value=41 Score=40.88 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 768 QDAQISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 768 ~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
.-+|-+.||..|+++...--.+...=-.+++.|..
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~ 192 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQS 192 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 45677788888888777766666665566666643
No 139
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.96 E-value=18 Score=44.59 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=15.1
Q ss_pred hhhcccchhhhhchHHHHHHHHhh
Q 003591 275 FGLRSVNSLAVRNSSLAISWLEAT 298 (808)
Q Consensus 275 ~~~~~~~~~~~~ns~~q~~Wl~~~ 298 (808)
..+..+-+.+...+..-..|+.++
T Consensus 68 KvLreGHpsal~es~r~r~~i~~l 91 (980)
T KOG0980|consen 68 KVLREGHPSALEESQRYKKWITQL 91 (980)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHH
Confidence 345556666666666667787665
No 140
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=84.84 E-value=6.8 Score=45.17 Aligned_cols=108 Identities=12% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 003591 675 QSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGS 753 (808)
Q Consensus 675 ~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~ 753 (808)
...|.++.+.+..+=+.|..=++.||+ +..-+.+|.=..=....+|+.+.. .++..|+..|..+|..|+++++..-
T Consensus 208 k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~-~~L~~m~~~i~~~kp~WkKiWE~EL-- 284 (424)
T PF03915_consen 208 KKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRAS-KELKKMKEYIKTEKPIWKKIWESEL-- 284 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCHHHHHHHHHHH--
Confidence 344555555555555555555566666 433467777777788889999988 4999999999999999999888731
Q ss_pred CCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 003591 754 PGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALK 801 (808)
Q Consensus 754 ~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~ 801 (808)
..+-+=|.-|.-+..++.|+....+.+.+.+.
T Consensus 285 ----------------~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~ 316 (424)
T PF03915_consen 285 ----------------QKVCEEQQFLKLQEDLLSDLKEDLKKASETFA 316 (424)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223345566666777888777777766554
No 141
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.72 E-value=15 Score=43.82 Aligned_cols=152 Identities=17% Similarity=0.232 Sum_probs=75.0
Q ss_pred CceEEEEeC-CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEE
Q 003591 52 PKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV 130 (808)
Q Consensus 52 ~rnll~~~~-~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~V 130 (808)
-+++++.-| |.+||+||=|..-. .+=..+ + ......|. .-| ...|..+.+|++|+.++--|..++-.
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~---~l~~s~-n------~~t~~sl~-sG~-k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTA---TLVASF-N------NVTVNSLG-SGP-KDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred CceeEEecCCCccEEEEEccCcch---hhhhhc-c------ccccccCC-CCC-ccceeeeecCCcceEEEecCcccceE
Confidence 455666655 99999999885211 000000 0 00111111 133 25789999999995544444455444
Q ss_pred EEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCC
Q 003591 131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVE 210 (808)
Q Consensus 131 v~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~ 210 (808)
+-=|+. .+ |...|-. | + -.|+-++-.+. ++-++--.||++||+|||.. ....++|-++.
T Consensus 197 ~wDprt-~~--------kimkLrG--H-T----dNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgq--QrCl~T~~vH~-- 255 (735)
T KOG0308|consen 197 LWDPRT-CK--------KIMKLRG--H-T----DNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQ--QRCLATYIVHK-- 255 (735)
T ss_pred Eecccc-cc--------ceeeeec--c-c----cceEEEEEcCC-CCeEeecCCCceEEeeeccc--cceeeeEEecc--
Confidence 333332 11 1112211 1 1 12333332222 35566778999999999954 22344454442
Q ss_pred CCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 211 PGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 211 ~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
.| +=+..-.+ +.=.+|.-.++|-||.
T Consensus 256 e~---------VWaL~~~~----sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 256 EG---------VWALQSSP----SFTHVYSGGRDGNIYR 281 (735)
T ss_pred Cc---------eEEEeeCC----CcceEEecCCCCcEEe
Confidence 11 11111111 1225666678899987
No 142
>PRK02224 chromosome segregation protein; Provisional
Probab=84.71 E-value=38 Score=42.73 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQ 675 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~ 675 (808)
+.++.+.+...+.+...++.+..+++..+++..
T Consensus 514 l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~ 546 (880)
T PRK02224 514 LEERREDLEELIAERRETIEEKRERAEELRERA 546 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 143
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=84.56 E-value=44 Score=33.53 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 633 VEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQ 688 (808)
Q Consensus 633 ~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~ 688 (808)
+...+..+.+||.=++.-..|.++-..+|.+++.++..+...-+.|..+...+..+
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~r 63 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQR 63 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666677777777777777777777666666655555444
No 144
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.56 E-value=10 Score=48.10 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003591 771 QISQLRSLMEKLSLVNSENLKKVKLVESALKKQ 803 (808)
Q Consensus 771 q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~ 803 (808)
-+..++.-|.++-..|.++.++++.|...++.-
T Consensus 936 ~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~ 968 (1293)
T KOG0996|consen 936 NIAKAQKKLSELEREIEDTEKELDDLTEELKGL 968 (1293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356667777777777777777777777666543
No 145
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.51 E-value=27 Score=45.80 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 676 SRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
..+...+..++.+-+.|.++.....+..-......-+.+-.|..|++.+.. .+..|+++...+.++.+.+.++
T Consensus 316 ~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~-~~~~Lt~~~~di~~ky~~~~~~ 388 (1201)
T PF12128_consen 316 SALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQE-QLDLLTSKHQDIESKYNKLKQK 388 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554443321111223345677889999988884 7777777776666665554444
No 146
>PRK03918 chromosome segregation protein; Provisional
Probab=84.34 E-value=39 Score=42.53 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 003591 774 QLRSLMEKLSLVNSENLKKVKLVESALK 801 (808)
Q Consensus 774 ~l~~~L~~~~~~i~e~~~k~~~~~~~~~ 801 (808)
.+...+.++...+.++.+++..++..++
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 331 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIK 331 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666666665554
No 147
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=84.28 E-value=77 Score=39.57 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccccc-------------------------Cccc
Q 003591 712 GAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTL-------------------------GKNY 766 (808)
Q Consensus 712 ~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~-------------------------~~~~ 766 (808)
.+|++|-+-++.+.. +++.|++.=..+|.|++....+.-++ +.|..+. |.+.
T Consensus 1019 ~Ke~efeetmdaLq~-di~~lEsek~elKqrl~~~~~k~q~~--s~~~~~~~ist~~sG~~s~~~~~s~~~g~a~~g~~p 1095 (1243)
T KOG0971|consen 1019 KKEKEFEETMDALQA-DIDQLESEKAELKQRLNSQSKKTQEG--SRGPPPSGISTLVSGIASEEQQRSAIPGQALVGDSP 1095 (1243)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHhhhcccccCcc--ccCCCCcceeccccCCCCCccccccCCCcccccccH
Confidence 489999999999985 99999999999999986643331111 1222222 2333
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHH
Q 003591 767 VQDAQISQLRSLMEKLSLVNSEN 789 (808)
Q Consensus 767 ~~~~q~~~l~~~L~~~~~~i~e~ 789 (808)
+-..|+..+++++++.-....++
T Consensus 1096 ~l~~qin~l~na~~qer~er~~L 1118 (1243)
T KOG0971|consen 1096 LLLQQINALRNAISQERHERSIL 1118 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888887766555444
No 148
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.09 E-value=1e+02 Score=36.79 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 618 RSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVE 672 (808)
Q Consensus 618 ~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~ 672 (808)
.+.|.+=++-|. .|+.-.......+...+..|+.|+..--.++..++.+.+.+.
T Consensus 268 ~~~L~~D~nK~~-~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 268 KARLQDDVNKFQ-AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHhHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666666666 666666666677777778887777776666666666666655
No 149
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=84.00 E-value=30 Score=38.85 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=60.6
Q ss_pred EeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCC
Q 003591 97 VMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSD 176 (808)
Q Consensus 97 ~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd 176 (808)
++...+|-..-+.-+.+|+.+.|||.=|+.+.-=|.|.+ .+.|+++..-. -+...|..+.|||.|
T Consensus 121 TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d--------~~nl~~v~~I~------aH~~~lAalafs~~G- 185 (391)
T KOG2110|consen 121 TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD--------TINLQPVNTIN------AHKGPLAALAFSPDG- 185 (391)
T ss_pred hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE--------cccceeeeEEE------ecCCceeEEEECCCC-
Confidence 333333433557778889999999998877633222221 13344444321 235678999998854
Q ss_pred CEEEEEecCC-eEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCC
Q 003591 177 THLGILSSDS-VFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD 230 (808)
Q Consensus 177 ~~LvvLtsD~-~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~ 230 (808)
.-|.+-.+.+ +||+|.+..+ . .-+.+. +|.. -..+.|++|+++
T Consensus 186 ~llATASeKGTVIRVf~v~~G-~---kl~eFR---RG~~----~~~IySL~Fs~d 229 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEG-Q---KLYEFR---RGTY----PVSIYSLSFSPD 229 (391)
T ss_pred CEEEEeccCceEEEEEEcCCc-c---Eeeeee---CCce----eeEEEEEEECCC
Confidence 2233333334 5699999552 2 122222 2221 235789999985
No 150
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.94 E-value=26 Score=46.38 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 676 SRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
..|.++++++....+.+..+++.+..
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 151
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.52 E-value=59 Score=39.55 Aligned_cols=30 Identities=13% Similarity=0.291 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVE 672 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~ 672 (808)
|...+..|+.++++...++.++...+.++.
T Consensus 34 mseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 34 MSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666666665
No 152
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.22 E-value=61 Score=33.59 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003591 771 QISQLRSLMEKLSLVNSENLKKVKLVESALKKQ 803 (808)
Q Consensus 771 q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~ 803 (808)
+...++..|.+....|.++.+++.+.....+.|
T Consensus 126 kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rq 158 (194)
T PF15619_consen 126 KLSQLEQKLQEKEKKIQELEKQLELENKSFRRQ 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 355555555666666666666666655555443
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=83.18 E-value=6.9 Score=42.58 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=34.0
Q ss_pred cCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCC
Q 003591 160 SSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVM 198 (808)
Q Consensus 160 ~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~ 198 (808)
.++...|--+.|||.|.+||+.--.|.+.-+||+..-..
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 356678999999999999999999999999999987433
No 154
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.94 E-value=56 Score=32.98 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCC-HHHHHHHHHHhhhhhhhHHHHHHHHH
Q 003591 660 RLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLS-GAEHALKAELDHFEGVELDALHSSIE 737 (808)
Q Consensus 660 ~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS-~aEk~~~~El~~~~~~~l~~L~~~ie 737 (808)
++..+++++....+.-..+.+.+..++..++.+.++..+|+. ......|.|- |.++.. . .+..|+..|+
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~-~--------~~~~l~~~i~ 162 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTK-E--------EVEELRKEIK 162 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-H--------HHHHHHHHHH
Confidence 333444555555555677888888899999999999999886 4444567776 555541 2 3444555555
Q ss_pred HHHHHHHHhh
Q 003591 738 ALRARLRRLT 747 (808)
Q Consensus 738 ~lk~r~~~~~ 747 (808)
.++.+++.+.
T Consensus 163 ~l~rk~~~l~ 172 (177)
T PF13870_consen 163 ELERKVEILE 172 (177)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 155
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=82.94 E-value=1.1e+02 Score=36.42 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 770 AQISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
+-+.+|-..+++ +...|..+.++.+|...+.
T Consensus 148 eak~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 178 (514)
T TIGR03319 148 EAKEILLEEVEE--EARHEAAKLIKEIEEEAKE 178 (514)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 335555555533 3445666777777766554
No 156
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.67 E-value=27 Score=36.12 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHhh
Q 003591 788 ENLKKVKLVESALKK 802 (808)
Q Consensus 788 e~~~k~~~~~~~~~~ 802 (808)
.+..+++.+.+-|+.
T Consensus 175 ~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 175 SLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444433
No 157
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.64 E-value=16 Score=39.18 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=48.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLP 703 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~ 703 (808)
|..--+.|+.-++.=+.+++..+..++.+.-....|.++|++-+..-+.+.+|+++|+++.
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiR 163 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIR 163 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444456666666667777778888888887788999999999999999999999999754
No 158
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.60 E-value=14 Score=32.16 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=36.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRN 701 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~ 701 (808)
|+.|+..+-.-+..=..++.+++++-..+.+..+.|.+-.++.++.|.....|++. |.+
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444455555555555566677777777777888888888887 443
No 159
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.60 E-value=56 Score=36.80 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeE--EEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE
Q 003591 105 NFEVSRISINRNGSALLLIGSDGL--CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~~~v--~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
+-.+.-|.+|++|++||=..++|= .|..+|... |.+.+.-..+ -.+|.+..|||.+. .|.+-
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~----------kl~eFRRG~~-----~~~IySL~Fs~ds~-~L~~s 236 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ----------KLYEFRRGTY-----PVSIYSLSFSPDSQ-FLAAS 236 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc----------EeeeeeCCce-----eeEEEEEEECCCCC-eEEEe
Confidence 456788999999999999999863 444454331 2222221122 23688888999876 56666
Q ss_pred ecCCeEEEEeccCC
Q 003591 183 SSDSVFRLFNLASD 196 (808)
Q Consensus 183 tsD~~ir~ydl~~~ 196 (808)
.+..+|++|-|+..
T Consensus 237 S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 237 SNTETVHIFKLEKV 250 (391)
T ss_pred cCCCeEEEEEeccc
Confidence 66689999999873
No 160
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=82.51 E-value=21 Score=41.71 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=68.7
Q ss_pred EEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEE-EeCC
Q 003591 57 AWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVM-YLYG 135 (808)
Q Consensus 57 ~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv-~LP~ 135 (808)
+...++..++..+.++|+|+-.|....-. ..-+.+. ....|+-|..||+|.|||..-.+.-.|+ .+-.
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~-------ee~~~~~----h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELK-------EEAKLLE----HRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCccc-------ceeeeec----ccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 34446666666666666666655433200 1112222 2357899999999999999876655544 3332
Q ss_pred CCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 136 RTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 136 ~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
+.. +.+.+ .|+ ..+|..+.|-|.+. ++..=.=|.+|-+|++.+
T Consensus 519 ~~~-------~~~~w-----~FH----takI~~~aWsP~n~-~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 519 REV-------KTNRW-----AFH----TAKINCVAWSPNNK-LVATGSLDTNVIIYSVKK 561 (603)
T ss_pred Cce-------eccee-----eee----eeeEEEEEeCCCce-EEEeccccceEEEEEccC
Confidence 211 11122 133 35899999999874 666666689999999988
No 161
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.36 E-value=17 Score=39.26 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.3
Q ss_pred HHHHHH
Q 003591 732 LHSSIE 737 (808)
Q Consensus 732 L~~~ie 737 (808)
+...+.
T Consensus 138 l~~~l~ 143 (302)
T PF10186_consen 138 LQSQLA 143 (302)
T ss_pred HHHHHH
Confidence 333333
No 162
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.30 E-value=18 Score=39.22 Aligned_cols=64 Identities=11% Similarity=0.262 Sum_probs=54.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
...++..|+++..+.|++.+.++|.+..++++.++++-....+|+.+++.+-..|.+++..++.
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688888889999999999999999999999988888889999999888888888777554
No 163
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.99 E-value=42 Score=36.75 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 664 AQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 664 l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
+.-.++++....+.+..||+........+..-+..|+
T Consensus 73 l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 73 LELEIDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444444445555555555555555555555555
No 164
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.96 E-value=3.4 Score=43.43 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=44.0
Q ss_pred CCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCC--CCCCcceEEEEecCCCCCCceEEEEEecCccEEEEccc
Q 003591 176 DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYR--NAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPV 253 (808)
Q Consensus 176 d~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~--~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP~ 253 (808)
+.+|++||+++.+++||+...... -....+.|....... ......++++.+.. .+.+| |.++||+.|+.++-
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~-~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~----~G~Pi-V~lsng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAV-LPPVSIAPLLNSSPVSDKSSSPNITSCSLTS----NGVPI-VTLSNGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeec-cCCccHHHHhcccccccCCCCCcEEEEEEcC----CCCEE-EEEeCCCEEEeccc
Confidence 788999999999999999773221 111222221111000 01234567777775 33554 56678999999884
Q ss_pred C
Q 003591 254 V 254 (808)
Q Consensus 254 l 254 (808)
|
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 165
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.84 E-value=17 Score=42.41 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=54.6
Q ss_pred CceEeecCCCcceeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEe
Q 003591 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (808)
Q Consensus 94 ~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WH 172 (808)
.-+.|... .-.|..+.++++|++|+..... .|.|-.+-. +. +.|...-.+ ..++. .+..+.||
T Consensus 280 ~~~~l~~h---s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~--~~-----~~~~~~~~~-----~~~~~-~~~~~~fs 343 (456)
T KOG0266|consen 280 CVRKLKGH---SDGISGLAFSPDGNLLVSASYDGTIRVWDLET--GS-----KLCLKLLSG-----AENSA-PVTSVQFS 343 (456)
T ss_pred EEEeeecc---CCceEEEEECCCCCEEEEcCCCccEEEEECCC--Cc-----eeeeecccC-----CCCCC-ceeEEEEC
Confidence 34455533 2368899999999999998644 333333321 11 112111111 11334 79999999
Q ss_pred cCCCCEEEEEecCCeEEEEeccC
Q 003591 173 PYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 173 P~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
|.+ .+|++-+.|+++++||+..
T Consensus 344 p~~-~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 344 PNG-KYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred CCC-cEEEEecCCCeEEEEEccC
Confidence 765 5888899999999999976
No 166
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.79 E-value=19 Score=43.83 Aligned_cols=129 Identities=16% Similarity=0.305 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003591 663 EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRAR 742 (808)
Q Consensus 663 ~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r 742 (808)
+++..+...+.+++.++++++++.++++.+..-+..|+. +-+.-..|++++.+ ....++.+|+.+|.+
T Consensus 334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e-----------~k~nve~elqsL~~-l~aerqeQidelKn~ 401 (1265)
T KOG0976|consen 334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQE-----------KKENVEEELQSLLE-LQAERQEQIDELKNH 401 (1265)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 344444444455667777777777777766665555553 22344556677663 445677788888888
Q ss_pred HHHhhcCCCCCCC---C--c---ccccc-C-cccCcHHHHHHHHHHHHH-h------hhhhHHHHHHHHHHHHHHhhhc
Q 003591 743 LRRLTQSPEGSPG---N--Q---QRQTL-G-KNYVQDAQISQLRSLMEK-L------SLVNSENLKKVKLVESALKKQE 804 (808)
Q Consensus 743 ~~~~~~~~~~~~~---~--~---~~~~~-~-~~~~~~~q~~~l~~~L~~-~------~~~i~e~~~k~~~~~~~~~~~~ 804 (808)
+-++.+-.+ +-- + + .+... | .-.+.|+|.+.+|..-.- . =+.-.||+..++.++.+|.+|-
T Consensus 402 if~~e~~~~-dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qr 479 (1265)
T KOG0976|consen 402 IFRLEQGKK-DHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQR 479 (1265)
T ss_pred hhhhhhccc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhc
Confidence 777655422 100 0 0 00000 2 334667777776653311 0 1223467777777777777764
No 167
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.68 E-value=25 Score=37.72 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPL 710 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~L 710 (808)
+|+.|.+.++.-+.+|+ ..|.++ +.+.+...+ .+ .+| +++...-+++.+|++..
T Consensus 143 eyv~y~~slK~vlk~R~-~~Q~~l----e~k~e~l~k---~~------~dr-~~~~~ev~~~e~kve~a----------- 196 (243)
T cd07666 143 EYVLYSETLMGVIKRRD-QIQAEL----DSKVEALAN---KK------ADR-DLLKEEIEKLEDKVECA----------- 196 (243)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHh---hh------hhH-HHHHHHHHHHHHHHHHH-----------
Confidence 67777777777666664 222222 223222222 11 122 23333444444444442
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003591 711 SGAEHALKAELDHFEGVELDALHSSIEA 738 (808)
Q Consensus 711 S~aEk~~~~El~~~~~~~l~~L~~~ie~ 738 (808)
++..++|++|++..+...++..+-.
T Consensus 197 ---~~~~k~e~~Rf~~~k~~D~k~~~~~ 221 (243)
T cd07666 197 ---NNALKADWERWKQNMQTDLRSAFTD 221 (243)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888876555556555433
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=81.58 E-value=10 Score=43.48 Aligned_cols=126 Identities=22% Similarity=0.335 Sum_probs=76.8
Q ss_pred CCceEEEEeCCceEEEEeCCC-cEEEE---------Eeec------cCCCCCC----ccc------c---cCCceEeecC
Q 003591 51 APKNLVAWDGASRLYYWDQNA-QCLHR---------ISVR------LGEPDPT----SIL------A---AFPSKVMRAD 101 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~-~~l~~---------~~lR------~~~~~~~----~~~------~---~~~yk~L~~~ 101 (808)
..+-+++|.+++.+|+||=+. .|+++ +.+- +...+.+ .+| + ..+-+.+.
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-- 432 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-- 432 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh--
Confidence 368888888899999999864 55554 1111 0000000 000 0 11112222
Q ss_pred CCcceeeeEEEeCCCCCEEEEEec---CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCE
Q 003591 102 VKLNFEVSRISINRNGSALLLIGS---DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTH 178 (808)
Q Consensus 102 ~~l~f~i~~i~~s~sG~~Lal~G~---~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~ 178 (808)
.|.+.|..|.+|+++..||++.. ..+-.|.+|..+.. .=-|+. ..+-..|.++.|-|.| +.
T Consensus 433 -NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF-----------sNfP~~---n~~vg~vtc~aFSP~s-G~ 496 (514)
T KOG2055|consen 433 -NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF-----------SNFPTS---NTKVGHVTCMAFSPNS-GY 496 (514)
T ss_pred -hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee-----------ccCCCC---CCcccceEEEEecCCC-ce
Confidence 24578999999999999999865 58888999865321 101100 1122347777887754 46
Q ss_pred EEEEecCCeEEEEecc
Q 003591 179 LGILSSDSVFRLFNLA 194 (808)
Q Consensus 179 LvvLtsD~~ir~ydl~ 194 (808)
|.|=+.++.+++|.|.
T Consensus 497 lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeecCCCceeeEeec
Confidence 7888899999999874
No 169
>PRK03918 chromosome segregation protein; Provisional
Probab=81.55 E-value=17 Score=45.76 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.4
Q ss_pred cccCCC
Q 003591 598 ILLPQA 603 (808)
Q Consensus 598 ~~~P~~ 603 (808)
+++|+.
T Consensus 130 ~~~~Qg 135 (880)
T PRK03918 130 IYIRQG 135 (880)
T ss_pred EEEecc
Confidence 334443
No 170
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.39 E-value=54 Score=40.73 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=33.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLSEAQNKILKVE--------ERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~--------~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
+.+-|..|+..++.++++.-.++++-+.+-+-+. ++=..|..++..++.+......|++.+++
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444444433211111 22244556666666677777778777766
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.38 E-value=54 Score=39.37 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE------RQSRLEERIDHAVQ 687 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~------~~e~L~~Rie~a~~ 687 (808)
...++.++++.++.+.+....++..++..++.|.. ..+.|.+++.++..
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n 223 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSN 223 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhC
Confidence 33446777777777666666677777777777663 34556655555443
No 172
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=81.33 E-value=32 Score=39.70 Aligned_cols=117 Identities=18% Similarity=0.306 Sum_probs=74.2
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeC-CCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC-CCEEEEEec
Q 003591 107 EVSRISINRNGSALLLIGSDGLCVMYLY-GRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSS 184 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~~~v~Vv~LP-~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s-d~~LvvLts 184 (808)
.|+-|.++.+|.++.-.|..+-+.+-+= +-.++.... .+.+ +|..+.+.++|....--+.+ ++-|.....
T Consensus 125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~-------~~~p-~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH-------SVKP-LHIFSDHTLSITDLQIGSGGTNARLYTASE 196 (476)
T ss_pred ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC-------Cccc-eeeeccCcceeEEEEecCCCccceEEEecC
Confidence 5888999999999988888765555432 222221111 1122 23334567778887777775 788899999
Q ss_pred CCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 185 D~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
|+++|+||++.+.-.. ++.+ | ..+.++.++-+. --+||=+++|-||.
T Consensus 197 D~t~k~wdlS~g~LLl--ti~f-p---------~si~av~lDpae------~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLL--TITF-P---------SSIKAVALDPAE------RVVYIGTEEGKIFQ 243 (476)
T ss_pred CceEEEEEeccceeeE--EEec-C---------CcceeEEEcccc------cEEEecCCcceEEe
Confidence 9999999998852211 1111 0 123444454443 46788889999997
No 173
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.29 E-value=64 Score=34.21 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=41.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHA 716 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~ 716 (808)
..+|+.|+.....++......|.....++..+..+-+++..++.++..+..+|..++..+. .....+|+.+.+.
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~---~~~~~~l~~a~~~ 153 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLP---PNGESPLSEAQRW 153 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccC---CCCcchhhHHHHH
Confidence 3445555555555555555555555555555555555555556665555555555555433 1222777776543
No 174
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.29 E-value=38 Score=43.85 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 674 RQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 674 ~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
+.+.+.+.++++-++-+++.++++++
T Consensus 66 ~~~~~~~~i~~ap~~~~~~~~~l~~~ 91 (1109)
T PRK10929 66 RAKQYQQVIDNFPKLSAELRQQLNNE 91 (1109)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 33444444444444444444444443
No 175
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.23 E-value=47 Score=34.18 Aligned_cols=66 Identities=24% Similarity=0.404 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 003591 661 LSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIE 737 (808)
Q Consensus 661 L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie 737 (808)
..++.++|..+...-+.|..++.+++.+-+.+.+|.+..+. ..+|.+.+|++-++. .-.+|++.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~----------~~~k~~~~ei~~lk~-~~~ql~~~l~ 187 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ----------EEEKKHQEEIDFLKK-QNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 34666677777777777777777777777777777766442 356777777777663 5555555554
No 176
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=81.17 E-value=48 Score=34.89 Aligned_cols=92 Identities=12% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVE-----ERQSRLEERIDHAVQQHNILEQRLQHLRNLPGA 705 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~-----~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~ 705 (808)
+|+.....|+.-+.+|.+.++..-.-+ ..|...++++.++. ++-+.+.+-+.++..++....+|++.+.
T Consensus 103 eY~r~i~svk~~f~~R~~a~~~~q~a~-~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is----- 176 (224)
T cd07623 103 DYIGLIGAIKDVFHERVKVWQNWQNAQ-QTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEIS----- 176 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 666666677777777777764433221 23333334433332 2233444555556666666666666653
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 003591 706 HKKPLSGAEHALKAELDHFEGVELDALHSSIE 737 (808)
Q Consensus 706 ~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie 737 (808)
..+++||.+++.+....++..++
T Consensus 177 ---------~~~k~El~rF~~erv~dfk~~l~ 199 (224)
T cd07623 177 ---------KTIKKEIERFEKNRVKDFKDIII 199 (224)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888877645544544443
No 177
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.09 E-value=66 Score=37.52 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003591 729 LDALHSSIEALRARLRR 745 (808)
Q Consensus 729 l~~L~~~ie~lk~r~~~ 745 (808)
+..++..+.+++.++..
T Consensus 245 i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 245 IDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444444444433
No 178
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.04 E-value=27 Score=46.29 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=6.9
Q ss_pred ceEEEEEecCccE
Q 003591 235 RFSVFVLFSDGSI 247 (808)
Q Consensus 235 ~~tLyiL~~~GdI 247 (808)
.|.--|...-||+
T Consensus 149 ~f~~vi~~~Qge~ 161 (1311)
T TIGR00606 149 VLNNVIFCHQEDS 161 (1311)
T ss_pred HHhhceeeCCccc
Confidence 3444445556665
No 179
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.92 E-value=89 Score=37.28 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
+-+++++.-+..|+.|+++=..++.+........+++......|+..++.....+..|.+.|.
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 334445555555555555555555544444444444444444555555555555555555433
No 180
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=80.88 E-value=50 Score=34.57 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhhcCC
Q 003591 677 RLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEG---VELDALHSSIEALRARLRRLTQSP 750 (808)
Q Consensus 677 ~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~---~~l~~L~~~ie~lk~r~~~~~~~~ 750 (808)
.|-+-+-++.+.|..|..+++.+.+ ++..--.||-..=..|.+.+..+.. .+.+.....|+.....+.++..+.
T Consensus 55 ~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~ 132 (219)
T PF08397_consen 55 ELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKS 132 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666666667777666666333 4444445555555566665554442 122233333444444444444443
No 181
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.78 E-value=60 Score=39.05 Aligned_cols=105 Identities=13% Similarity=0.202 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER---QSRLEERIDHAVQQHNILEQRL 696 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~---~e~L~~Rie~a~~~Q~~L~~R~ 696 (808)
.+.+.+..|- ..+.+--.|+..+..+...+...+.+..+....+..+++.|..+ .+.=.+++..+.++-+.|.+++
T Consensus 282 ~i~~~Id~lY-d~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~ 360 (560)
T PF06160_consen 282 EIEERIDQLY-DILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRY 360 (560)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 33444456677777777777777777777777788888887754 1111244444445555666666
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHhhhh
Q 003591 697 QHLRNLPGAHKKPLSGAEHALKAELDHFE 725 (808)
Q Consensus 697 ~~L~~l~~~~~~~LS~aEk~~~~El~~~~ 725 (808)
+.+......+.-+-|.-.-.|.+-.+++.
T Consensus 361 ~~~~~~i~~~~~~yS~i~~~l~~~~~~l~ 389 (560)
T PF06160_consen 361 EDLEERIEEQQVPYSEIQEELEEIEEQLE 389 (560)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHHH
Confidence 66444222566666666665555544444
No 182
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.78 E-value=28 Score=33.32 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 618 RSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQ 697 (808)
Q Consensus 618 ~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~ 697 (808)
.+-|...+|.+-.++.. ++.++.+|..+.+.--.++..+..+.+.++ ...+++..++...++|..|++
T Consensus 18 ve~L~s~lr~~E~E~~~--------l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~----~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 18 VERLQSQLRRLEGELAS--------LQEELARLEAERDELREEIVKLMEENEELR----ALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666544422 455566666666555555555555555443 345777888889999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003591 698 HLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 698 ~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~ 747 (808)
.+-.|.+ ||. +++..|+..|..+|...+.+.
T Consensus 86 t~LellG---------EK~----------E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 86 TLLELLG---------EKS----------EEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHhc---------chH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 9555332 222 244456666666666555443
No 183
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.77 E-value=19 Score=44.89 Aligned_cols=138 Identities=15% Similarity=0.242 Sum_probs=80.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHH
Q 003591 637 HKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEH 715 (808)
Q Consensus 637 ~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk 715 (808)
.+.+-|+.+.+..-+.++.+-++.|++++..|..+......+..+++++...+.....-.+.|+. +. ... .|+
T Consensus 663 krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~-~~k-----~e~ 736 (1200)
T KOG0964|consen 663 KRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELN-TIK-----GEK 736 (1200)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-Hhh-----hHH
Confidence 55677777778888888888888888888888888777777777777777777666666666554 22 111 122
Q ss_pred HHHH-HHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003591 716 ALKA-ELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVK 794 (808)
Q Consensus 716 ~~~~-El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~ 794 (808)
.... .+... ...+..+..++.++.++++++..-.... -.+.+++. .+..|.++...|.++..|.+
T Consensus 737 ~~v~~s~~~k-~~~Le~i~~~l~~~~~~~~~~e~el~se---------l~sqLt~e----e~e~l~kLn~eI~~l~~kl~ 802 (1200)
T KOG0964|consen 737 SRVQESLEPK-GKELEEIKTSLHKLESQSNYFESELGSE---------LFSQLTPE----ELERLSKLNKEINKLSVKLR 802 (1200)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhHHHHHhHH---------HHhhcCHH----HHHHHHHhhHHHHHHHHHHH
Confidence 2211 12222 2355666666666666666654332110 02234443 33344455555666666555
No 184
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=80.76 E-value=62 Score=32.03 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLS 662 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~ 662 (808)
....+...|..+...++..+.....++.
T Consensus 57 ~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 84 (202)
T PF01442_consen 57 RLDEVKERIEERIEELKNSLDSSTSELD 84 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333344444444444444443333333
No 185
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=80.61 E-value=14 Score=42.95 Aligned_cols=173 Identities=14% Similarity=0.222 Sum_probs=90.9
Q ss_pred EEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec-CeEEEEEeCC
Q 003591 57 AWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYG 135 (808)
Q Consensus 57 ~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~ 135 (808)
++.|.++ +||-+..+|+.+-+|... .+. ....++=|.+.. +| |+...+.|+|+-|.+=|. .+|+|-+|-.
T Consensus 426 tIS~~tr-hVyTgGkgcVKVWdis~p--g~k----~PvsqLdcl~rd-ny-iRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 426 TISNPTR-HVYTGGKGCVKVWDISQP--GNK----SPVSQLDCLNRD-NY-IRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred EecCCcc-eeEecCCCeEEEeeccCC--CCC----CccccccccCcc-cc-eeeeEecCCCceEEeccccceeeeeeccC
Confidence 3443444 445555578888666443 212 122334343343 33 999999999999999887 5788888853
Q ss_pred CCC--CCC--CCceeeEEEEecc--e------------eeeccCCccceeEEEEecCCCCEEEEEe---------cCCeE
Q 003591 136 RTC--SSD--NKTIICRTVSVGS--Q------------IYFSSSNVIRTLQVSWHPYSDTHLGILS---------SDSVF 188 (808)
Q Consensus 136 ~~~--~~d--~~~~~c~t~~v~~--~------------~~~~~~~~~~I~qv~WHP~sd~~LvvLt---------sD~~i 188 (808)
.+- +-+ ..-..|...-+.+ . .+... ...-|++.-=||.+-+||+|=. =||++
T Consensus 497 pTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 497 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 321 100 0001121111100 0 11111 2234666666777777776652 27788
Q ss_pred EEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEec--CCCCCCceEEEEEecCccEEEEcccCCCCCC
Q 003591 189 RLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFG--GDHLWDRFSVFVLFSDGSIYILCPVVPFGSV 259 (808)
Q Consensus 189 r~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg--~~~~w~~~tLyiL~~~GdIYalcP~lP~~~~ 259 (808)
|.||+...-...+.+|. -.+ |+.| |..+| |-|=|+|+.|..+.--=|.+-+
T Consensus 576 RcWDlregrqlqqhdF~--------------SQI--fSLg~cP~~dW----lavGMens~vevlh~skp~kyq 628 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFS--------------SQI--FSLGYCPTGDW----LAVGMENSNVEVLHTSKPEKYQ 628 (705)
T ss_pred eehhhhhhhhhhhhhhh--------------hhh--eecccCCCccc----eeeecccCcEEEEecCCcccee
Confidence 88887553332222221 012 4444 45677 3455888888887775554443
No 186
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.58 E-value=28 Score=41.25 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCccc-CcHHHHHHHHHHHHHhhhhhHHHHHHH
Q 003591 715 HALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNY-VQDAQISQLRSLMEKLSLVNSENLKKV 793 (808)
Q Consensus 715 k~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~l~~~L~~~~~~i~e~~~k~ 793 (808)
..+.+|+..-+ .+...|+...+.||.+++.+ ..++.-. .--....+|+.-|++..-.+..+.|++
T Consensus 297 ~~l~~Eie~kE-eE~e~lq~~~d~Lk~~Ie~Q-------------~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 297 EMLKSEIEEKE-EEIEKLQKENDELKKQIELQ-------------GISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 35666777777777766653 1112111 111124455666666666666666666
Q ss_pred HHHHH
Q 003591 794 KLVES 798 (808)
Q Consensus 794 ~~~~~ 798 (808)
...+.
T Consensus 363 w~~~l 367 (581)
T KOG0995|consen 363 WELKL 367 (581)
T ss_pred HhHHH
Confidence 55544
No 187
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.46 E-value=1e+02 Score=37.07 Aligned_cols=91 Identities=13% Similarity=0.262 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 003591 621 LHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER----------QSRLEERIDHAVQQHN 690 (808)
Q Consensus 621 L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~----------~e~L~~Rie~a~~~Q~ 690 (808)
+...+..|- .-+.+-..|+..+.+....+...+.+-.+....+..++..|..+ ...+.++++.+.++.+
T Consensus 287 i~~~Id~Ly-d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 287 IQERIDQLY-DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 444444444 33445556677777777777777777777777888888888766 3444444444444444
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 003591 691 ILEQRLQHLRNLPGAHKKPLSGAEHALKA 719 (808)
Q Consensus 691 ~L~~R~~~L~~l~~~~~~~LS~aEk~~~~ 719 (808)
.+.++++. ..-+.|..+..+.+
T Consensus 366 ~~~~~i~~-------~~~~ysel~e~lee 387 (569)
T PRK04778 366 EITERIAE-------QEIAYSELQEELEE 387 (569)
T ss_pred HHHHHHHc-------CCCCHHHHHHHHHH
Confidence 44333332 33336655555443
No 188
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=80.35 E-value=53 Score=33.41 Aligned_cols=96 Identities=19% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 628 FQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE-------RQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 628 l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~-------~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
|+ +|..+...+++-|.+|- ....+.+.-...+...+.++.+++. +-..+.++|..+....+....+++.+.
T Consensus 95 L~-~y~~~~~s~k~~l~~R~-~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~ 172 (218)
T cd07596 95 LK-EYLRYCQAVKETLDDRA-DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEIS 172 (218)
T ss_pred HH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 003591 701 NLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEAL 739 (808)
Q Consensus 701 ~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~l 739 (808)
..+..|+.++.......|+..+...
T Consensus 173 --------------~~~~~El~~f~~~~~~dlk~~l~~~ 197 (218)
T cd07596 173 --------------ERLKEELKRFHEERARDLKAALKEF 197 (218)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHH
No 189
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.11 E-value=94 Score=33.74 Aligned_cols=63 Identities=16% Similarity=0.352 Sum_probs=34.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERID----HAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie----~a~~~Q~~L~~R~~~L~~ 701 (808)
....++..++.|..++.+=..++.+.+++++++...=+.|...|+ ++.+|++.|.+|++.+..
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555555555555555444333333333 334588889999888664
No 190
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.04 E-value=57 Score=32.05 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 621 LHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE---RQSRLEERIDHAVQQHNILEQRLQ 697 (808)
Q Consensus 621 L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~---~~e~L~~Rie~a~~~Q~~L~~R~~ 697 (808)
+-.-++.+-.++..+-+.+.+ |.+|...|..++..-..+|.++++.+..... ..+.|..||.-+.+.=+....++.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~s-L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITS-LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444 6666666666666655666555555544443 244555666555555444444444
Q ss_pred H
Q 003591 698 H 698 (808)
Q Consensus 698 ~ 698 (808)
.
T Consensus 98 e 98 (143)
T PF12718_consen 98 E 98 (143)
T ss_pred H
Confidence 4
No 191
>PTZ00420 coronin; Provisional
Probab=80.03 E-value=26 Score=42.12 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCccceeEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 003591 161 SNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (808)
Q Consensus 161 ~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~ 196 (808)
.+...|..+.|||..+..|+.-..|++||+||+...
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 345679999999998888999999999999999753
No 192
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=79.95 E-value=45 Score=44.85 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 706 HKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 706 ~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
-..-|...|.....|++.+.. ....|+..+..++.....+.+.
T Consensus 753 E~~ll~~t~~rL~~e~~~l~~-e~~~L~~~l~~lQt~~~~~e~s 795 (1822)
T KOG4674|consen 753 EKLLLKETEERLSQELEKLSA-EQESLQLLLDNLQTQKNELEES 795 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777763 5555666666665555544443
No 193
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.86 E-value=1.2e+02 Score=40.51 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 628 FQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 628 l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
|...|-.|...+...--.....-+.++..-..++..+.+++...++.-+.+.++++.+..+++.+.++++.|+.
T Consensus 252 i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~ 325 (1353)
T TIGR02680 252 FLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQG 325 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555554444344444444555555556666666777777777777777777777777777777777663
No 194
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=79.76 E-value=60 Score=43.68 Aligned_cols=153 Identities=22% Similarity=0.292 Sum_probs=80.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAEL 721 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El 721 (808)
|...++.|...-++.=....+++.++..+...-..+.+.+.-++.++.+|..+++.+.. +- ...--....|..|.+||
T Consensus 201 L~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls-~~k~t~~s~~~kf~~El 279 (1822)
T KOG4674|consen 201 LSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELS-KLKDTAESSEEKFEKEL 279 (1822)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHH
Confidence 33333333333333333344566666666666677788888888888888888887322 32 12222334488899998
Q ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHhhcCCCCCCCCccccccC-cccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 003591 722 DHFEGVEL-DALHSSIEALRARLRRLTQSPEGSPGNQQRQTLG-KNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESA 799 (808)
Q Consensus 722 ~~~~~~~l-~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~ 799 (808)
..=. ++ ..+.+..+.++.++.-+.+....- .+... -+.--+.+.-+++..=..++.++.++.|++..+|..
T Consensus 280 ~~q~--kL~eL~ks~~ee~~~~~~el~~~i~~~-----~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~ 352 (1822)
T KOG4674|consen 280 STQK--KLNELWKSKLEELSHEVAELQRAIEEL-----EKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGE 352 (1822)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7633 23 223334444444443222221100 00000 000012223344444445577888999999999988
Q ss_pred Hhhh
Q 003591 800 LKKQ 803 (808)
Q Consensus 800 ~~~~ 803 (808)
|++.
T Consensus 353 l~~a 356 (1822)
T KOG4674|consen 353 LEDA 356 (1822)
T ss_pred HHhh
Confidence 8764
No 195
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.69 E-value=48 Score=40.72 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=50.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHH--------HHHHHHHHHHHH----------HHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLS---EAQNKILKVEER---QSR--------LEERIDHAVQQH----------NILEQR 695 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~---~l~e~i~~l~~~---~e~--------L~~Rie~a~~~Q----------~~L~~R 695 (808)
+--|...++.|+.|+++.+.+.- .+++++..+++. +.. |.+|++.+++.- -.|.+.
T Consensus 457 ~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~K 536 (762)
T PLN03229 457 ELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYK 536 (762)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHH
Confidence 34455566666666666665544 355555555521 111 444444333211 145556
Q ss_pred HHHHhcCCCCCCCCCCH---HHHHHHHHHhhhhhhhHH------HHHHHHHHHHHHHHH
Q 003591 696 LQHLRNLPGAHKKPLSG---AEHALKAELDHFEGVELD------ALHSSIEALRARLRR 745 (808)
Q Consensus 696 ~~~L~~l~~~~~~~LS~---aEk~~~~El~~~~~~~l~------~L~~~ie~lk~r~~~ 745 (808)
++.|+... +..-||+ +.-.+.+|++. ++. .++..+|.+++-+.+
T Consensus 537 le~Lk~~~--~~~~~s~g~~~a~~Lk~ei~k----ki~e~~~~~~~kek~ea~~aev~~ 589 (762)
T PLN03229 537 LDMLNEFS--RAKALSEKKSKAEKLKAEINK----KFKEVMDRPEIKEKMEALKAEVAS 589 (762)
T ss_pred HHHHHHHH--HhhhhcccchhhhhhhHHHHH----HHHHhcccHHHHHHHHHHHHHHHh
Confidence 66666543 2223333 23334444442 333 377777777777655
No 196
>PRK11281 hypothetical protein; Provisional
Probab=79.53 E-value=49 Score=42.98 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=7.3
Q ss_pred CcHHHHHHHHHHH
Q 003591 767 VQDAQISQLRSLM 779 (808)
Q Consensus 767 ~~~~q~~~l~~~L 779 (808)
++++|...++.-+
T Consensus 189 l~~~~~~~l~ae~ 201 (1113)
T PRK11281 189 LRPSQRVLLQAEQ 201 (1113)
T ss_pred CCHHHHHHHHHHH
Confidence 6666655555444
No 197
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=79.19 E-value=14 Score=33.10 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=17.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003591 717 LKAELDHFEGVELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 717 ~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~ 747 (808)
+..=|..+. ..+..+.++++.++.|+.+++
T Consensus 62 y~~KL~~ik-krm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 62 YVKKLVNIK-KRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 444455555 255566666666666666554
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.06 E-value=36 Score=37.89 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=44.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCC----C--ccccccC----cccCcHHHHHHHHHHHHHhhhhh
Q 003591 717 LKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPG----N--QQRQTLG----KNYVQDAQISQLRSLMEKLSLVN 786 (808)
Q Consensus 717 ~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~----~--~~~~~~~----~~~~~~~q~~~l~~~L~~~~~~i 786 (808)
+.-|+..+. ++.+.+..+++.++.++.++....--... + .--.++| +..-.+.--..|-+++.+..+++
T Consensus 104 ~~~~l~~~~-~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL 182 (314)
T PF04111_consen 104 LQLELIEFQ-EERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLL 182 (314)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHH
Confidence 344444444 36677778888888888777665421100 0 1112333 22223445778999999999999
Q ss_pred HHHHHHHH
Q 003591 787 SENLKKVK 794 (808)
Q Consensus 787 ~e~~~k~~ 794 (808)
.=+.+|++
T Consensus 183 ~~la~~l~ 190 (314)
T PF04111_consen 183 QTLAKKLN 190 (314)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHhC
Confidence 98888876
No 199
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.96 E-value=69 Score=38.81 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=83.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHH---
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAE--- 714 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aE--- 714 (808)
+++..|-...+.|+.....+..+.....++++.++.....+.+-+..-.+.+++|...++++.+ . ..=|.+=
T Consensus 419 ~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k---~--~~Rs~Yt~RI 493 (594)
T PF05667_consen 419 KHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPK---D--VNRSAYTRRI 493 (594)
T ss_pred HHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---C--CCHHHHHHHH
Confidence 3445555555555555555555555555666666665555555555555566666666666443 1 1112222
Q ss_pred -------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhH
Q 003591 715 -------HALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNS 787 (808)
Q Consensus 715 -------k~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~ 787 (808)
|+-..|+.++- .+...|+..|..+..+++|.-.--.- ... +..-.|...++.+..|+++...=+
T Consensus 494 lEIv~NI~KQk~eI~KIl-~DTr~lQkeiN~l~gkL~RtF~v~dE-------lif-rdAKkDe~~rkaYK~La~lh~~c~ 564 (594)
T PF05667_consen 494 LEIVKNIRKQKEEIEKIL-SDTRELQKEINSLTGKLDRTFTVTDE-------LIF-RDAKKDEAARKAYKLLASLHENCS 564 (594)
T ss_pred HHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHH-------HHH-HHhhcCHHHHHHHHHHHHHHHHHH
Confidence 23344555554 36788999999999888874322110 000 111256678888888888888777
Q ss_pred HHHHHHHHH
Q 003591 788 ENLKKVKLV 796 (808)
Q Consensus 788 e~~~k~~~~ 796 (808)
++++.|.+.
T Consensus 565 ~Li~~v~~t 573 (594)
T PF05667_consen 565 QLIETVEET 573 (594)
T ss_pred HHHHHHHHh
Confidence 777666543
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=78.78 E-value=28 Score=35.60 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=22.8
Q ss_pred cceeEEEEecCCCCEEEEEe--cCCeEEEEecc
Q 003591 164 IRTLQVSWHPYSDTHLGILS--SDSVFRLFNLA 194 (808)
Q Consensus 164 ~~I~qv~WHP~sd~~LvvLt--sD~~ir~ydl~ 194 (808)
.+|..+.|.|.++. ++|++ .++.+++||+.
T Consensus 60 ~~I~~~~WsP~g~~-favi~g~~~~~v~lyd~~ 91 (194)
T PF08662_consen 60 GPIHDVAWSPNGNE-FAVIYGSMPAKVTLYDVK 91 (194)
T ss_pred CceEEEEECcCCCE-EEEEEccCCcccEEEcCc
Confidence 35999999997654 44443 56899999995
No 201
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.03 E-value=45 Score=40.38 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=5.0
Q ss_pred HHHHHhhccc
Q 003591 292 ISWLEATFPE 301 (808)
Q Consensus 292 ~~Wl~~~~~~ 301 (808)
+-||-+-.|.
T Consensus 101 l~fLiekLP~ 110 (594)
T PF05667_consen 101 LMFLIEKLPR 110 (594)
T ss_pred HHHHHHHCCc
Confidence 4455554443
No 202
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.81 E-value=58 Score=36.66 Aligned_cols=72 Identities=18% Similarity=0.345 Sum_probs=50.4
Q ss_pred eeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC---------C
Q 003591 107 EVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS---------D 176 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s---------d 176 (808)
=|+-+.+|.+|+++|-.+. .+|.|=.+.... |+..- .....+|..+.|-|.+ +
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---------~k~~l--------R~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---------CKAEL--------REHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccch---------hhhhh--------hccccceEEEEecccccCcchhhccC
Confidence 3778889999999998866 477776665432 22111 1233467777777764 1
Q ss_pred -----CEEEEEecCCeEEEEeccC
Q 003591 177 -----THLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 177 -----~~LvvLtsD~~ir~ydl~~ 195 (808)
..|+...-|.+||+||++.
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred CCCCccEEEeecccceEEEEeccC
Confidence 3789999999999999987
No 203
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=77.81 E-value=46 Score=38.00 Aligned_cols=15 Identities=7% Similarity=0.095 Sum_probs=10.1
Q ss_pred HHHHHhHHHHHHHHH
Q 003591 641 FELKHHAPQLKQIID 655 (808)
Q Consensus 641 ~el~rR~~~L~~e~~ 655 (808)
.-|.+|+..|..+++
T Consensus 264 d~i~~rl~~L~~~~~ 278 (388)
T PF04912_consen 264 DSIERRLKSLLSELE 278 (388)
T ss_pred HHHHHHHHHHHHHHH
Confidence 447777777776663
No 204
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.75 E-value=1.1e+02 Score=38.92 Aligned_cols=51 Identities=31% Similarity=0.416 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhh
Q 003591 673 ERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFE 725 (808)
Q Consensus 673 ~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~ 725 (808)
+..+.+.+|+..+.++.+.|.+++..++...... .++.++.......+.+.
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~~~~~e~~~~~~~l~ 636 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSL--ELSEAENELEEAEEELE 636 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHH
Confidence 3444555677777777778888887777743233 55555544444444443
No 205
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=77.62 E-value=1e+02 Score=36.55 Aligned_cols=142 Identities=15% Similarity=0.286 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 616 EGRSTLHQYFNLFQENYVEYAHKV--HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILE 693 (808)
Q Consensus 616 e~~~~L~~a~~~l~e~~~~~~~~v--~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~ 693 (808)
++...|...+..+++.|......+ ...++.+++.|...+..=...+..-...-..++.+=+.+.+-+..+++.|.++.
T Consensus 323 e~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~ 402 (570)
T COG4477 323 ENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQ 402 (570)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHH
Q 003591 694 QRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQIS 773 (808)
Q Consensus 694 ~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 773 (808)
+++..|| ++|+++ .+ .+..+.+++.+++++|++ ..--|-| +
T Consensus 403 e~L~~Lr-----------------kdEl~A-re-~l~~~~~~l~eikR~mek--~nLPGlP------------------e 443 (570)
T COG4477 403 EHLTSLR-----------------KDELEA-RE-NLERLKSKLHEIKRYMEK--SNLPGLP------------------E 443 (570)
T ss_pred HHHHHHH-----------------HHHHHH-HH-HHHHHHHHHHHHHHHHHH--cCCCCCc------------------H
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Q 003591 774 QLRSLMEKLSLVNSENLKKVKLV 796 (808)
Q Consensus 774 ~l~~~L~~~~~~i~e~~~k~~~~ 796 (808)
.+.+.+...|..|.++.+++..+
T Consensus 444 ~~l~l~~~~~~~i~~l~~eLse~ 466 (570)
T COG4477 444 TFLSLFFTAGHEIQDLMKELSEV 466 (570)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhc
No 206
>PF13514 AAA_27: AAA domain
Probab=77.60 E-value=61 Score=42.28 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHH-HHHHHHhhh
Q 003591 647 APQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEH-ALKAELDHF 724 (808)
Q Consensus 647 ~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk-~~~~El~~~ 724 (808)
.+.+..+.++...+...+.+++.++...-+.+.++++.+.+..+...++... |..+. .+..++..+- .+++.++.+
T Consensus 661 a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~g--L~~~~~~~~~~~~l~~l~~l 738 (1111)
T PF13514_consen 661 AEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELG--LPADASPEEALEALELLEEL 738 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCHHHHHHHHHHHHHH
Confidence 3334444444445555555666666655566666666666666666666665 55432 2222333322 355555555
Q ss_pred hh--hhHHHHHHHHHHHHHHHHHhhcC
Q 003591 725 EG--VELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 725 ~~--~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
.+ .+...+..++++++..+..+..+
T Consensus 739 ~~~~~~~~~~~~ri~~~~~~~~~f~~~ 765 (1111)
T PF13514_consen 739 REALAEIRELRRRIEQMEADLAAFEEQ 765 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 23445555555555555444443
No 207
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.49 E-value=11 Score=44.68 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIID----DQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQR 695 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~----~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R 695 (808)
-|++|++=+|.+|-...+..+.+|+.+-+.=-.+++ ++-...+..+|++..++..-..|..|+.++..+=..|.+|
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 488999999999998888888888755443333333 2333334566666666666666666666666666666666
Q ss_pred HHHHhcC----CCCCCCCCCHHHHH---HHHHHhhhhhhhH-------HHHHHHHHHHHHHHHHhhcC
Q 003591 696 LQHLRNL----PGAHKKPLSGAEHA---LKAELDHFEGVEL-------DALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 696 ~~~L~~l----~~~~~~~LS~aEk~---~~~El~~~~~~~l-------~~L~~~ie~lk~r~~~~~~~ 749 (808)
++.|+.. .+.....|-++|+. |.+|...+.. ++ ..|..-|...+..|+--...
T Consensus 326 I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~-Elq~LlD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 326 IEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSV-ELQKLLDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred HHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHhhchHhHHHhHHHHHHHHhccccCC
Confidence 6665542 23344556666654 3344444332 22 35666677777776654444
No 208
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.49 E-value=40 Score=40.92 Aligned_cols=151 Identities=13% Similarity=0.199 Sum_probs=92.3
Q ss_pred CCceEEEEeCCCcEEEEEeec---cCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec-CeEEEEEeCC
Q 003591 60 GASRLYYWDQNAQCLHRISVR---LGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVMYLYG 135 (808)
Q Consensus 60 ~~~~l~~w~~~~~~l~~~~lR---~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~ 135 (808)
.|+. +.|++|...||+.+.- .-...+. ...++...+.-+ .+|+.+-++|++.+|..++. .-+.|..||.
T Consensus 21 tGG~-~~~s~nG~~L~t~~~d~Vi~idv~t~----~~~l~s~~~ed~--d~ita~~l~~d~~~L~~a~rs~llrv~~L~t 93 (775)
T KOG0319|consen 21 TGGP-VAWSSNGQHLYTACGDRVIIIDVATG----SIALPSGSNEDE--DEITALALTPDEEVLVTASRSQLLRVWSLPT 93 (775)
T ss_pred cCCc-eeECCCCCEEEEecCceEEEEEccCC----ceecccCCccch--hhhheeeecCCccEEEEeeccceEEEEEccc
Confidence 3555 8888888888874221 1111101 112444443333 47889999999998877755 4678888885
Q ss_pred CCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCC
Q 003591 136 RTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYR 215 (808)
Q Consensus 136 ~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~ 215 (808)
. + ..|++.. .+..+|.-+.+||.+ +-|.+--.|+.+++||+.... -+..|. |.
T Consensus 94 g--k------~irswKa--------~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~----~th~fk----G~-- 146 (775)
T KOG0319|consen 94 G--K------LIRSWKA--------IHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGY----CTHSFK----GH-- 146 (775)
T ss_pred c--h------HhHhHhh--------ccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCE----EEEEec----CC--
Confidence 4 1 0122222 124579999999999 777888899999999997731 122322 11
Q ss_pred CCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 216 NAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 216 ~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
+--+-+++|++. |..+=|+.=..||-|++
T Consensus 147 ---gGvVssl~F~~~--~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 147 ---GGVVSSLLFHPH--WNRWLLASGATDGTVRV 175 (775)
T ss_pred ---CceEEEEEeCCc--cchhheeecCCCceEEE
Confidence 123668999983 44444444445666665
No 209
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.31 E-value=1.1e+02 Score=38.31 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Q 003591 769 DAQISQLRSLMEKLSLVNSENLKKV 793 (808)
Q Consensus 769 ~~q~~~l~~~L~~~~~~i~e~~~k~ 793 (808)
..|..+|...|++-...-.+++++.
T Consensus 525 ~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 525 NNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555555555555555555544
No 210
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=77.18 E-value=49 Score=35.58 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 673 ERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 673 ~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.+++.|...+..+...-..|.+-+..
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333
No 211
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=77.13 E-value=12 Score=43.10 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=54.5
Q ss_pred eEEEeCCCCCEEEEEecCeEEEEEeCCCC-CCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC----------CC
Q 003591 109 SRISINRNGSALLLIGSDGLCVMYLYGRT-CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS----------DT 177 (808)
Q Consensus 109 ~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~-~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s----------d~ 177 (808)
..|.+||+|++||+...+.+.|+...-.. ..... ..+|.+--.......++-.|..+.|-|++ .+
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~----~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~ 80 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGEN----ENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT 80 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCC----CCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE
Confidence 46799999999999999999888665321 11111 11122211000111233589999999992 38
Q ss_pred EEEEEecCCeEEEEecc
Q 003591 178 HLGILSSDSVFRLFNLA 194 (808)
Q Consensus 178 ~LvvLtsD~~ir~ydl~ 194 (808)
|+||=|+++.||+|..+
T Consensus 81 ~I~VG~ssG~vrfyte~ 97 (415)
T PF14655_consen 81 CIAVGTSSGYVRFYTEN 97 (415)
T ss_pred EEEEEecccEEEEEecc
Confidence 99999999999999974
No 212
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=76.98 E-value=44 Score=33.19 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=67.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC--CCCCCCCHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNLPG--AHKKPLSGAEHA 716 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~--~~~~~LS~aEk~ 716 (808)
..++.+|+++|..+-.+.-.+.-+-+ ++|-++++.=.++++.| +. |++++. ...+..+..|..
T Consensus 22 n~~~~~~Ir~Li~~Q~~~Er~w~~~R----------e~l~~k~~~r~e~~k~l----~~~l~s~g~~i~~~~~~~~~~~e 87 (150)
T PF10454_consen 22 NPEFLQRIRRLIKEQHDHERQWWEGR----------EALIAKQKARAEKKKKL----DEVLRSVGGGISDQSEVTTPEKE 87 (150)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----HHHHHhcccccccccccccccHH
Confidence 45566666666555444443333322 23333333323333333 44 666443 222788888999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHH
Q 003591 717 LKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLM 779 (808)
Q Consensus 717 ~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L 779 (808)
...||+.|.+....+..+-..+..+.++.+.--.-+. ++.+++.++..+|..+
T Consensus 88 ~~~EL~~fD~kV~~a~~~m~~~~~~~L~~LgVPfF~~----------~~~~~~~el~~~q~rm 140 (150)
T PF10454_consen 88 DEAELDKFDEKVYKASKQMSKEQQAELKELGVPFFYI----------KEDISDEELRELQKRM 140 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeC----------CCCCCcHHHHHHHHHH
Confidence 9999999987666777777777788877765443322 2345666666666655
No 213
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.86 E-value=14 Score=37.95 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=34.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER------QSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~------~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
...+++++..|+.++.+-..++.++++++...... ...+-++++.++++.+.|.+-++.
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~ 128 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEK 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777777766521 122334555555555555544444
No 214
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=76.72 E-value=71 Score=39.15 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=65.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKA 719 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~ 719 (808)
...++.+...|+.....-..++......+......+..+..+.+.++.+++.....++.|+..- .+-..
T Consensus 526 i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~-----------~e~~~ 594 (698)
T KOG0978|consen 526 IGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQY-----------AELEL 594 (698)
T ss_pred HHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH
Confidence 3334444455555544445555555555555556677777888888888888888888876522 12234
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCC
Q 003591 720 ELDHFEGVELDALHSSIEALRARLRRLTQSPE 751 (808)
Q Consensus 720 El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~ 751 (808)
||+.+. .+..+|+.-++.++.++++......
T Consensus 595 ele~~~-~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 595 ELEIEK-FKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhccccc
Confidence 566665 3778999999999999999766544
No 215
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=76.49 E-value=8.8 Score=41.98 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=54.2
Q ss_pred CCCcceeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEE
Q 003591 101 DVKLNFEVSRISINRNGSALLLIG-SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL 179 (808)
Q Consensus 101 ~~~l~f~i~~i~~s~sG~~Lal~G-~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~L 179 (808)
+|| ..-|..+.++|++.+|++.. +.++.+-..|...-. . .| ....+|..+.|++ +.++
T Consensus 10 npP-~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--------------~-~~---~~~~plL~c~F~d--~~~~ 68 (323)
T KOG1036|consen 10 NPP-EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--------------L-KF---KHGAPLLDCAFAD--ESTI 68 (323)
T ss_pred CCC-hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--------------h-he---ecCCceeeeeccC--CceE
Confidence 455 46799999999998887753 233444444433110 0 12 2456899999999 8899
Q ss_pred EEEecCCeEEEEeccCCCC
Q 003591 180 GILSSDSVFRLFNLASDVM 198 (808)
Q Consensus 180 vvLtsD~~ir~ydl~~~~~ 198 (808)
++=+.|++||.||+..+.+
T Consensus 69 ~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 69 VTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred EEeccCceEEEEEecCCcc
Confidence 9999999999999987543
No 216
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.43 E-value=59 Score=38.33 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003591 712 GAEHALKAELDHFEGVELDALHSSIEALRARLR 744 (808)
Q Consensus 712 ~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~ 744 (808)
.+||.+-+|++.+. .+.+.|...|.+|++-+.
T Consensus 324 rderE~~EeIe~~~-ke~kdLkEkv~~lq~~l~ 355 (654)
T KOG4809|consen 324 RDERERLEEIESFR-KENKDLKEKVNALQAELT 355 (654)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 47888999999988 488889999998887443
No 217
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=76.30 E-value=7.7 Score=43.88 Aligned_cols=103 Identities=20% Similarity=0.338 Sum_probs=69.6
Q ss_pred CCceEEEEeC-CceEEEEeCCC-cEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecC-e
Q 003591 51 APKNLVAWDG-ASRLYYWDQNA-QCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD-G 127 (808)
Q Consensus 51 ~~rnll~~~~-~~~l~~w~~~~-~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~-~ 127 (808)
..+.|+++-+ |..+=+||+.. +|+-. |. .. .-.|-.+..|++|.||+-.|.. .
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~t---------------------lh--~H-KntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLAT---------------------LH--GH-KNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhh---------------------hh--hc-cceEEEEEEcCCCCeeEEccCCce
Confidence 4677777654 66777888864 22211 11 11 2357789999999999988764 4
Q ss_pred EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEecc
Q 003591 128 LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (808)
Q Consensus 128 v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~ 194 (808)
+.|+++- .-+ + + |......-.|..+.|||+-.+-+++--+|+.|-.|.+.
T Consensus 288 ~kv~DiR--~mk-E---l-----------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 288 CKVFDIR--TMK-E---L-----------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EEEEehh--HhH-H---H-----------HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 4455543 111 1 1 12223455789999999999999999999999999986
No 218
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=76.25 E-value=48 Score=34.24 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=29.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEER 674 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~ 674 (808)
+-|.||+..|+.++.+...++..+.+++....+.
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~ 40 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQA 40 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4499999999999999999999999888887754
No 219
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.17 E-value=95 Score=38.82 Aligned_cols=55 Identities=29% Similarity=0.544 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003591 680 ERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRR 745 (808)
Q Consensus 680 ~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~ 745 (808)
.+|+.+...-+.+.++++..+. .+|+...+|++.+.. ++..+...++.+...+..
T Consensus 436 ~~lEea~~eker~~e~l~e~r~----------~~e~e~~Eele~~~~-e~~~lk~~~~~LQ~eLsE 490 (775)
T PF10174_consen 436 ETLEEALREKERLQERLEEQRE----------RAEKERQEELETYQK-ELKELKAKLESLQKELSE 490 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHH
Confidence 5555555555555555555431 245666666666663 666666666666655544
No 220
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.10 E-value=7.1 Score=43.35 Aligned_cols=87 Identities=15% Similarity=0.239 Sum_probs=41.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELD 722 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~ 722 (808)
+...++.|+.|.+...++|.++..+.+.+.+.-..|.+..++..+..+..-+.++.+.. .-..+.+|.+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~-----------~l~~~~~e~~ 116 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQL-----------ELIEFQEERD 116 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 44444445555555555555555444444444444444444433333333333333221 1234555566
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 003591 723 HFEGVELDALHSSIEALRA 741 (808)
Q Consensus 723 ~~~~~~l~~L~~~ie~lk~ 741 (808)
.++. +.....+.++.|+.
T Consensus 117 sl~~-q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 117 SLKN-QYEYASNQLDRLRK 134 (314)
T ss_dssp HHHH-HHHHHHHHHHCHHT
T ss_pred HHHH-HHHHHHHHHHHHHh
Confidence 6553 56666666665554
No 221
>PRK10698 phage shock protein PspA; Provisional
Probab=75.94 E-value=47 Score=35.07 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=34.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 003591 645 HHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LR 700 (808)
Q Consensus 645 rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~ 700 (808)
.-.+.|..-+++-...+.+++..+..+......+..+++++....+...+|.+. |.
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555556666666666667777777777777766666666 54
No 222
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=75.84 E-value=1.2e+02 Score=32.84 Aligned_cols=168 Identities=17% Similarity=0.276 Sum_probs=98.6
Q ss_pred EEEEeCCceEEEEeCC-CcEEEEEeeccCC------CCCCc-----------ccccCCceEeecCCCcceeeeEEEeCCC
Q 003591 55 LVAWDGASRLYYWDQN-AQCLHRISVRLGE------PDPTS-----------ILAAFPSKVMRADVKLNFEVSRISINRN 116 (808)
Q Consensus 55 ll~~~~~~~l~~w~~~-~~~l~~~~lR~~~------~~~~~-----------~~~~~~yk~L~~~~~l~f~i~~i~~s~s 116 (808)
|.+..+|..+-+||-. ..|...++.+.+| |+++. ......||.+. ..+..|++..|+-|.+
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-~~~~~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN-EEQFKFEVNEISWNNS 158 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee-hhcccceeeeeeecCC
Confidence 4445568888888885 4777777777765 22221 11145677777 3455789999999987
Q ss_pred CCEEEEE-ecCeEEEEEeCCCCCCC--CCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEec
Q 003591 117 GSALLLI-GSDGLCVMYLYGRTCSS--DNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNL 193 (808)
Q Consensus 117 G~~Lal~-G~~~v~Vv~LP~~~~~~--d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl 193 (808)
+++.-+- |--.|.|+.-|.--... ..-+..|-++.++|. +.++.|=.+|+.+-+||+
T Consensus 159 nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~--------------------GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 159 NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD--------------------GRYFATGSADALVSLWDV 218 (313)
T ss_pred CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC--------------------CceEeeccccceeeccCh
Confidence 7776665 66799999998432110 112234555555542 245667778999999998
Q ss_pred cC--------CCCCCceEEEeccCCCCCCCCC-CCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 194 AS--------DVMQPEQEYYLQPVEPGRYRNA-ASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 194 ~~--------~~~~p~q~~~l~~~~~g~~~~~-~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
+. -.+-|.-++.++- .|+-... ++.-.+++++-.. +=.+|=.--+|..|.
T Consensus 219 ~ELiC~R~isRldwpVRTlSFS~--dg~~lASaSEDh~IDIA~vet----Gd~~~eI~~~~~t~t 277 (313)
T KOG1407|consen 219 DELICERCISRLDWPVRTLSFSH--DGRMLASASEDHFIDIAEVET----GDRVWEIPCEGPTFT 277 (313)
T ss_pred hHhhhheeeccccCceEEEEecc--CcceeeccCccceEEeEeccc----CCeEEEeeccCCcee
Confidence 75 2233555555442 3433222 2234567777652 224444444555554
No 223
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.82 E-value=1.4 Score=48.63 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 003591 660 RLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEAL 739 (808)
Q Consensus 660 ~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~l 739 (808)
+|..+.||+.+|+...+.|.+-+..+..+--.|..+++.+..-. .....||..+.. ++..|+..|..+
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl-----------~~~~s~L~sLss-tV~~lq~Sl~~l 96 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSL-----------ADMTSELNSLSS-TVTSLQSSLSSL 96 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544311 223344444443 444444444444
Q ss_pred HHHHHHhhcCCCCCCCCccccccC--ccc-CcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 740 RARLRRLTQSPEGSPGNQQRQTLG--KNY-VQDAQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 740 k~r~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
...+..+......- +..... .++ --..-+.-||+-...+++.|.++.++|+.+|+--
T Consensus 97 sssVs~lS~~ls~h----~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 97 SSSVSSLSSTLSDH----SSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhHHhhhhhhhhh----hhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCC
Confidence 44444433332211 001111 111 1223388899999999999999999999999753
No 224
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=75.65 E-value=1.5e+02 Score=37.96 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 618 RSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER 674 (808)
Q Consensus 618 ~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~ 674 (808)
++.+-.-++-|.+.|+ .+.....++..+.+.|+..++....+|..+++++.++...
T Consensus 457 l~~~~~~l~~~~e~~~-~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 457 LENLEKQLKDLTELYM-NQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777775 5557788899999999999999999999888888877743
No 225
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.38 E-value=31 Score=35.47 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=53.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.-...+..++..|..+++..-+.+..+++++..++-.-..+.+|+.++++..++|.+|.-.
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355688888889999988888888999999999988899999999999999999999876
No 226
>PRK01742 tolB translocation protein TolB; Provisional
Probab=75.22 E-value=54 Score=37.69 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=45.7
Q ss_pred eeeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE
Q 003591 107 EVSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~----~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
.+.....||+|+.||..+. ..|.+..+.. +. ++.+. .+. . ....+.|+|.+..-+++.
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t--g~-------~~~l~----~~~--g---~~~~~~wSPDG~~La~~~ 266 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS--GA-------RKVVA----SFR--G---HNGAPAFSPDGSRLAFAS 266 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--Cc-------eEEEe----cCC--C---ccCceeECCCCCEEEEEE
Confidence 4778899999999998753 3577766632 11 11111 010 1 123578999776555666
Q ss_pred ecCCeEEEEeccCCCC
Q 003591 183 SSDSVFRLFNLASDVM 198 (808)
Q Consensus 183 tsD~~ir~ydl~~~~~ 198 (808)
..|+.+++|.++.+..
T Consensus 267 ~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 267 SKDGVLNIYVMGANGG 282 (429)
T ss_pred ecCCcEEEEEEECCCC
Confidence 6788888887655433
No 227
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=75.22 E-value=12 Score=42.49 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=53.4
Q ss_pred eeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecC-CCCEEEEEecC
Q 003591 107 EVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPY-SDTHLGILSSD 185 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~-sd~~LvvLtsD 185 (808)
.|.-..+|++|.+||-.+=.+++=| |+..+ |...+. | ..+...|.-|.|||. ++-+|+.-..|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kv-----W~~~~-----~~~~~~----l--~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKV-----WSVPQ-----CNLLQT----L--RGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeE-----eecCC-----cceeEE----E--eccccceeeEEEccCCCccceeeeccC
Confidence 4556778888888776544433211 22211 322222 1 245678999999999 48899999999
Q ss_pred CeEEEEeccCCCCCCceEEE
Q 003591 186 SVFRLFNLASDVMQPEQEYY 205 (808)
Q Consensus 186 ~~ir~ydl~~~~~~p~q~~~ 205 (808)
+++++|.++.+ .|-|++.
T Consensus 241 gtvklw~~~~e--~~l~~l~ 258 (459)
T KOG0272|consen 241 GTVKLWKLSQE--TPLQDLE 258 (459)
T ss_pred CceeeeccCCC--cchhhhh
Confidence 99999998763 4555553
No 228
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=74.93 E-value=1.2e+02 Score=32.20 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 619 STLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKV-EERQSRLEERIDHAVQQHNILEQRLQ 697 (808)
Q Consensus 619 ~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l-~~~~e~L~~Rie~a~~~Q~~L~~R~~ 697 (808)
..|.++++=...++ ..+.+..+.+--+-.++..++++...+.....++.... ....+.|+...-..+...++..+.++
T Consensus 27 ~~l~Q~ird~~~~l-~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~ 105 (225)
T COG1842 27 KMLEQAIRDMESEL-AKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALE 105 (225)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555554333 23334444444444555555544444444444333222 22246666665555555555555555
Q ss_pred H-HhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 003591 698 H-LRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRL 746 (808)
Q Consensus 698 ~-L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~ 746 (808)
. +.. +.+....+.+.+..+.. ++..++.+.++++++....
T Consensus 106 ~~~~~--------~~~~~~~l~~~~~~Le~-Ki~e~~~~~~~l~ar~~~a 146 (225)
T COG1842 106 AELQQ--------AEEQVEKLKKQLAALEQ-KIAELRAKKEALKARKAAA 146 (225)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5 332 23455666666776664 6667777777776665443
No 229
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.15 E-value=1.2e+02 Score=31.68 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 003591 619 STLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER-QSRLEERIDHAVQQHNILEQRLQ 697 (808)
Q Consensus 619 ~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~-~e~L~~Rie~a~~~Q~~L~~R~~ 697 (808)
.+|.++++=+.+.+ ..+.+..+.+...-.+|+.++......+.....+....-.. .+.|+...-.-+..++....+++
T Consensus 26 ~~l~q~ird~e~~l-~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 26 KMLEQAIRDMEEQL-RKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777444 45555555566667777777766666666666655544322 45555554444444444444444
Q ss_pred H-HhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 698 H-LRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 698 ~-L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
. +.. +....-.+...+..++. ++..++.+.+.|++|.+...-+
T Consensus 105 ~~~~~--------~~~~~~~l~~~l~~l~~-kl~e~k~k~~~l~ar~~~a~a~ 148 (221)
T PF04012_consen 105 QQLDQ--------AEAQVEKLKEQLEELEA-KLEELKSKREELKARENAAKAQ 148 (221)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 222 22345566666666664 7777777777777776655444
No 230
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.09 E-value=56 Score=33.13 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003591 656 DQHARLSEAQNKILKV 671 (808)
Q Consensus 656 ~Ql~~L~~l~e~i~~l 671 (808)
.+...+.+++.++..+
T Consensus 55 ~~~a~~~eLr~el~~~ 70 (177)
T PF07798_consen 55 LFKAAIAELRSELQNS 70 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 231
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=74.07 E-value=73 Score=29.29 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHH
Q 003591 712 GAEHALKAELDHFEGVELDALHSSI 736 (808)
Q Consensus 712 ~aEk~~~~El~~~~~~~l~~L~~~i 736 (808)
+.|+.+.++|+....+....|...+
T Consensus 57 ~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 57 KRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666555443333333333
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=73.97 E-value=1.5e+02 Score=32.93 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=84.9
Q ss_pred eEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec--CeEEEE
Q 003591 54 NLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGLCVM 131 (808)
Q Consensus 54 nll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~--~~v~Vv 131 (808)
......++..+|+-|-..-.+++.++..... .. .....+. .+...-.+++.++|+|+++-++++ .+|.|+
T Consensus 148 ~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~---~l---~~~~~~~--~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGADRVYVYDIDDDTG---KL---TPVDSIK--VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEE-TTS----TE---EEEEEEE--CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCc---eE---EEeeccc--cccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 3343433455666666555666655532210 00 0122333 445678999999999999999985 689999
Q ss_pred EeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCC
Q 003591 132 YLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEP 211 (808)
Q Consensus 132 ~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~ 211 (808)
.+....+. -....++...+.-+. ....-..+..+|.+.--.|.--.+|.|-+|+++.........-.+.
T Consensus 220 ~~~~~~g~----~~~~~~~~~~~~~~~---~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~---- 288 (345)
T PF10282_consen 220 DYDPSDGS----LTEIQTISTLPEGFT---GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP---- 288 (345)
T ss_dssp EEETTTTE----EEEEEEEESCETTSC---SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE----
T ss_pred eecccCCc----eeEEEEeeecccccc---ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe----
Confidence 88743222 111222332221111 1114566777887654445566789999999965433332211111
Q ss_pred CCCCCCCCcceEEEEecCCCCCCceEEEEEec
Q 003591 212 GRYRNAASICPVDFSFGGDHLWDRFSVFVLFS 243 (808)
Q Consensus 212 g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~ 243 (808)
..+..+..|.|.+++ =.||+...
T Consensus 289 -----~~G~~Pr~~~~s~~g----~~l~Va~~ 311 (345)
T PF10282_consen 289 -----TGGKFPRHFAFSPDG----RYLYVANQ 311 (345)
T ss_dssp -----ESSSSEEEEEE-TTS----SEEEEEET
T ss_pred -----CCCCCccEEEEeCCC----CEEEEEec
Confidence 013347788887642 35666654
No 233
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.87 E-value=1.3e+02 Score=36.61 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 676 SRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
..|+++...+...-+.|..-++.|+.
T Consensus 412 a~lEkKvqa~~kERDalr~e~kslk~ 437 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQKSLKK 437 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555555555555555555554444
No 234
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=73.84 E-value=43 Score=38.58 Aligned_cols=114 Identities=15% Similarity=0.296 Sum_probs=62.6
Q ss_pred eEEEeCCCCCEEEEEecC-eEE--------EEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEE
Q 003591 109 SRISINRNGSALLLIGSD-GLC--------VMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHL 179 (808)
Q Consensus 109 ~~i~~s~sG~~Lal~G~~-~v~--------Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~L 179 (808)
..+.++|.|-.+|++-+. .+. .+.+...+|. .+ .++... + .+|+..-|-. +.+|
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~----ll--~~i~w~--------~-~~iv~~~wt~--~e~L 94 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK----LL--SSIPWD--------S-GRIVGMGWTD--DEEL 94 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC----Ee--EEEEEC--------C-CCEEEEEECC--CCeE
Confidence 357889999999999665 221 1222222221 11 112211 1 3567777733 7899
Q ss_pred EEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 180 GILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 180 vvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
|||++|+++|+||+.-.. .|.+... -+..+..+-.+-...|+. -.+.||+++++||.+.-
T Consensus 95 vvV~~dG~v~vy~~~G~~-----~fsl~~~--i~~~~v~e~~i~~~~~~~------~GivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 95 VVVQSDGTVRVYDLFGEF-----QFSLGEE--IEEEKVLECRIFAIWFYK------NGIVVLTGNNRFYVVNN 154 (410)
T ss_pred EEEEcCCEEEEEeCCCce-----eechhhh--ccccCcccccccccccCC------CCEEEECCCCeEEEEeC
Confidence 999999999999985321 3444310 000000000011223432 24888999999999754
No 235
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=73.67 E-value=55 Score=36.27 Aligned_cols=145 Identities=14% Similarity=0.208 Sum_probs=81.2
Q ss_pred eEEEEeCCceEEEEeCCCcEEEEEeeccCCC-------CCCcccc-----cCCceEeec-------CCCcceeeeEEEeC
Q 003591 54 NLVAWDGASRLYYWDQNAQCLHRISVRLGEP-------DPTSILA-----AFPSKVMRA-------DVKLNFEVSRISIN 114 (808)
Q Consensus 54 nll~~~~~~~l~~w~~~~~~l~~~~lR~~~~-------~~~~~~~-----~~~yk~L~~-------~~~l~f~i~~i~~s 114 (808)
+||++..|+.|.+|+-.. +..+-.+|.-.. .|.+..| ....++... -.+|.-.-+.|..+
T Consensus 99 hLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~ 177 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWS 177 (362)
T ss_pred heeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEc
Confidence 899999999999999874 444444553321 1111111 111221111 01122234458899
Q ss_pred CCCCEEEEEecCeEEEEEeCCCC--CCCC-CCceeeEEE---------------Eecce-----eeeccCCccceeEEEE
Q 003591 115 RNGSALLLIGSDGLCVMYLYGRT--CSSD-NKTIICRTV---------------SVGSQ-----IYFSSSNVIRTLQVSW 171 (808)
Q Consensus 115 ~sG~~Lal~G~~~v~Vv~LP~~~--~~~d-~~~~~c~t~---------------~v~~~-----~~~~~~~~~~I~qv~W 171 (808)
|.|++.++.+...|-|-.+-.-. ...+ ...+.|-++ .+-++ .++...+.-+|+.+..
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 99999999999999888764211 0000 000111111 00000 1112234557888877
Q ss_pred ecCCC-CEEEEEecCCeEEEEeccCCCCC
Q 003591 172 HPYSD-THLGILSSDSVFRLFNLASDVMQ 199 (808)
Q Consensus 172 HP~sd-~~LvvLtsD~~ir~ydl~~~~~~ 199 (808)
+-..+ ..||...||+.|++||++-...+
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EecCCceEEEEeccCceEEEEEccccccC
Confidence 76654 56699999999999999876443
No 236
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=73.64 E-value=33 Score=44.00 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhccc
Q 003591 792 KVKLVESALKKQESS 806 (808)
Q Consensus 792 k~~~~~~~~~~~~~~ 806 (808)
+++.+++.|+.+.+.
T Consensus 701 ~~~e~~~~lseek~a 715 (1317)
T KOG0612|consen 701 QMKEIESKLSEEKSA 715 (1317)
T ss_pred HHHHHHHHhcccccH
Confidence 355566666555443
No 237
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.59 E-value=18 Score=39.20 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 003591 659 ARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRN 701 (808)
Q Consensus 659 ~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~ 701 (808)
.+|+.++.++..|++.-|.+.-.++++++||+++...++. +++
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555677788888888889999999999999999988 443
No 238
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=73.29 E-value=7.7 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.3
Q ss_pred ccceeEEEEecCCCCEEEEEecCCeEEEEe
Q 003591 163 VIRTLQVSWHPYSDTHLGILSSDSVFRLFN 192 (808)
Q Consensus 163 ~~~I~qv~WHP~sd~~LvvLtsD~~ir~yd 192 (808)
...|..+.|+|.+ ..+++-..|+.+++|+
T Consensus 12 ~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3468999999977 6778888899999996
No 239
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.19 E-value=1.5e+02 Score=34.49 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=15.6
Q ss_pred HHHHhhhhhhhHHHHHHHHH---HHHHHHHHhhc
Q 003591 718 KAELDHFEGVELDALHSSIE---ALRARLRRLTQ 748 (808)
Q Consensus 718 ~~El~~~~~~~l~~L~~~ie---~lk~r~~~~~~ 748 (808)
+.+++.++. ++.+..++++ .+..++..-.+
T Consensus 344 ~~~Iqeleq-dL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 344 IRRIQELEQ-DLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHh
Confidence 455555553 6666666655 44444444333
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=73.16 E-value=80 Score=36.29 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=43.8
Q ss_pred eeeEEEeCCCCCEEEEEe----cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE
Q 003591 107 EVSRISINRNGSALLLIG----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G----~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
.+.....||+|+.|+.+. ...|.++.+... . ++ ++. .+ ...+....|+|.+..-+++.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--~-------~~--~l~--~~-----~g~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--Q-------RE--LVG--NF-----PGMTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC--c-------EE--Eee--cC-----CCcccCcEECCCCCEEEEEE
Confidence 477889999999999874 457777777432 1 11 121 11 12355678999765555666
Q ss_pred ecCCeEEEEeccC
Q 003591 183 SSDSVFRLFNLAS 195 (808)
Q Consensus 183 tsD~~ir~ydl~~ 195 (808)
..|+...+|-++.
T Consensus 265 ~~~g~~~Iy~~d~ 277 (435)
T PRK05137 265 SQGGNTDIYTMDL 277 (435)
T ss_pred ecCCCceEEEEEC
Confidence 6666655554433
No 241
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=73.02 E-value=98 Score=33.00 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE-----RQSRLEERIDHAVQQHNILEQRLQHLRNLPGA 705 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~-----~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~ 705 (808)
+|+.....|+.-+.+|.+.++..-.-| ..|...+....++.. +-+.+.+-+.+++.++....++++.+.
T Consensus 113 eYiR~i~svK~~f~~R~k~~~~~~~a~-~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is----- 186 (234)
T cd07664 113 DYIRLIAAVKGVFDQRMKCWQKWQDAQ-VTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQIS----- 186 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 777777788887888887766544322 333333444444421 222333444444445555555555543
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003591 706 HKKPLSGAEHALKAELDHFEGVELDALHSSIEA 738 (808)
Q Consensus 706 ~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~ 738 (808)
..+++||.+++.+....+.+.++.
T Consensus 187 ---------~~~k~El~rFe~er~~dfk~~l~~ 210 (234)
T cd07664 187 ---------KTIRKEVGRFEKERVKDFKTVIIK 210 (234)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888876555555555544
No 242
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=31 Score=32.96 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVE------------------------------ERQSRLEERIDHAVQQHNIL 692 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~------------------------------~~~e~L~~Rie~a~~~Q~~L 692 (808)
+..|...|+.+++-+.+++..+.+-.+.|. +..+++.+.|+.+..+++.|
T Consensus 28 l~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I 107 (131)
T KOG1760|consen 28 LNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESI 107 (131)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677776666666665554444443 34566666677777777777
Q ss_pred HHHHHHHhc
Q 003591 693 EQRLQHLRN 701 (808)
Q Consensus 693 ~~R~~~L~~ 701 (808)
..|++.|+.
T Consensus 108 ~~~m~~LK~ 116 (131)
T KOG1760|consen 108 SARMDELKK 116 (131)
T ss_pred HHHHHHHHH
Confidence 777777655
No 243
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.75 E-value=25 Score=44.98 Aligned_cols=7 Identities=0% Similarity=0.510 Sum_probs=3.3
Q ss_pred EEEEEec
Q 003591 237 SVFVLFS 243 (808)
Q Consensus 237 tLyiL~~ 243 (808)
-||.+|.
T Consensus 149 ~LYlVMd 155 (1317)
T KOG0612|consen 149 YLYLVMD 155 (1317)
T ss_pred ceEEEEe
Confidence 3454444
No 244
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=72.71 E-value=1.1e+02 Score=32.04 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 649 QLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 649 ~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
.+..-+.+-+.+...+++-+.....+.+.|.+-+++..++-+...+||+.|+.
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~ 139 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA 139 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555555666667788888888888888888888888774
No 245
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.53 E-value=63 Score=27.87 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 003591 647 APQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNL 702 (808)
Q Consensus 647 ~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l 702 (808)
+..|+-|++.-.++=+.+.++....++..+.|..+-+.+++.|..-.+|+.. |.++
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567777766556666666777777777888999999999999999999988 4443
No 246
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.51 E-value=1.3e+02 Score=31.37 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003591 674 RQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRR 745 (808)
Q Consensus 674 ~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~ 745 (808)
+-..+.+.+..++-.++.|.+|+.++.. .-..|...--+.+.|++.-.+-+--.|+.++..+...++.
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~----ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQ----ERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777542 1122333333444444443322222355555555555444
No 247
>PRK11020 hypothetical protein; Provisional
Probab=72.47 E-value=34 Score=32.17 Aligned_cols=48 Identities=25% Similarity=0.389 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 003591 667 KILKVEERQSRLEERIDHAVQQH-NILEQRLQHLRNLPGAHKKPLSGAEHA 716 (808)
Q Consensus 667 ~i~~l~~~~e~L~~Rie~a~~~Q-~~L~~R~~~L~~l~~~~~~~LS~aEk~ 716 (808)
.+......-+.|..+|++++.+| .+|.+....|..|+ -.|+|+.+|++
T Consensus 32 ~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lp--F~R~iTK~EQA 80 (118)
T PRK11020 32 KYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLP--FSRAITKKEQA 80 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cchhccHHHHH
Confidence 34444455677888888888665 46777777798887 68899999987
No 248
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=72.39 E-value=48 Score=38.06 Aligned_cols=86 Identities=19% Similarity=0.245 Sum_probs=49.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHAL 717 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~ 717 (808)
..+..|...++.|+.++++ ++..+.+.+..-+-+.++|++.+.+..+.|..=...++
T Consensus 226 ~~~~~L~~~~e~Lk~~~~~---e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LK-------------------- 282 (395)
T PF10267_consen 226 ESQSRLEESIEKLKEQYQR---EYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLK-------------------- 282 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 3445566666777766543 33444444444445555555555555555443333333
Q ss_pred HHHHhhhhh-------hhHHHHHHHHHHHHHHHHHhh
Q 003591 718 KAELDHFEG-------VELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 718 ~~El~~~~~-------~~l~~L~~~ie~lk~r~~~~~ 747 (808)
.||..|++ +..+.++..+|..+.|+.++.
T Consensus 283 -qeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 283 -QELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred -HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333332 466788999999999999887
No 249
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=72.23 E-value=57 Score=39.11 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=33.7
Q ss_pred cCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcc
Q 003591 766 YVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQES 805 (808)
Q Consensus 766 ~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~~ 805 (808)
...-+++..|..-|+.-..+|.++.+.+.-+++.|..+-+
T Consensus 231 ~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~ 270 (629)
T KOG0963|consen 231 AAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS 270 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3566789999999999999999999999999988876544
No 250
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=71.93 E-value=45 Score=32.71 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDH 684 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~ 684 (808)
++.+..+...+..++.++-..+..+++++.........+..+...
T Consensus 54 ~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 54 REDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ 98 (151)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555555443333333333
No 251
>KOG4328 consensus WD40 protein [Function unknown]
Probab=71.52 E-value=22 Score=40.94 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=65.2
Q ss_pred EEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCCCCCCCCCceeeEEE
Q 003591 73 CLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGRTCSSDNKTIICRTV 150 (808)
Q Consensus 73 ~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~--~~v~Vv~LP~~~~~~d~~~~~c~t~ 150 (808)
-+.++++|... +.|--+... .-.|+.|.+||-..++.+-+. +++.|-++-.-.++.. +
T Consensus 302 ~f~~iD~R~~~---------s~~~~~~lh---~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p------ 361 (498)
T KOG4328|consen 302 NFNVIDLRTDG---------SEYENLRLH---KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--P------ 361 (498)
T ss_pred ceEEEEeecCC---------ccchhhhhh---hcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--c------
Confidence 55666777553 335444433 238999999999888777644 5677877754333311 1
Q ss_pred EecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEecc
Q 003591 151 SVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLA 194 (808)
Q Consensus 151 ~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~ 194 (808)
+..+-.+...|..|-|-|.+++ ||+-.-||.||+||.+
T Consensus 362 -----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 362 -----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred -----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 1112234567999999999988 8888899999999985
No 252
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.36 E-value=71 Score=30.87 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=26.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 656 DQHARLSE-AQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 656 ~Ql~~L~~-l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
.|++++.+ ++.-++.+..|=++|+.++++..+.++.+.+-+..++
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~ 95 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVR 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444442 3334445555666677777777777777777776655
No 253
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.23 E-value=97 Score=34.60 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=37.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRL 696 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~ 696 (808)
++.+.+.|...- .+|..++.+.+....+++.|.+|+..++.+.+++...+
T Consensus 4 L~SK~eAL~IL~----~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~ 53 (319)
T PF09789_consen 4 LQSKSEALLILS----QELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEA 53 (319)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445555665555 67888999999998889999888888877776666443
No 254
>PRK01156 chromosome segregation protein; Provisional
Probab=71.03 E-value=1.6e+02 Score=37.44 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVESALK 801 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~ 801 (808)
+..++..++++...|.++.++.+.++..++
T Consensus 471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554444443
No 255
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.01 E-value=34 Score=35.92 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=32.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLS-------EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~-------~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
-..|+..+.+.++.|+..-++++. +++++++.++....+|.+.+...-..-..|..|.+.|-
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 344555555555555544444444 44445555555555555555555555555555555544
No 256
>PRK10869 recombination and repair protein; Provisional
Probab=70.94 E-value=24 Score=42.29 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCC---CHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhc
Q 003591 687 QQHNILEQRLQHLRNLPGAHKKPL---SGAEHALKAELDHFEG--VELDALHSSIEALRARLRRLTQ 748 (808)
Q Consensus 687 ~~Q~~L~~R~~~L~~l~~~~~~~L---S~aEk~~~~El~~~~~--~~l~~L~~~ie~lk~r~~~~~~ 748 (808)
++-+++.+|+..|+++.+.+++.+ -+.-.++.+||+.++. +.+..|++++++++.++....+
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~ 362 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQ 362 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888777655555433 3344566677766654 3455666666666666555443
No 257
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=70.77 E-value=1.4e+02 Score=34.11 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 003591 632 YVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRL----EERIDHAVQQHNILEQRLQHLRNLPGAHK 707 (808)
Q Consensus 632 ~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L----~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~ 707 (808)
.-....+|-..+.+|+...+..+.+=-.++..+.++|..+...-+.| .++..-++--|--|..|..+ + ..-
T Consensus 238 l~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~R----P-~vE 312 (384)
T PF03148_consen 238 LRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQR----P-NVE 312 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcC----C-chH
Confidence 33445566677888887666666555555556666666666544333 34444444444444444332 0 000
Q ss_pred CCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 708 KPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 708 ~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
.--=.+.....+||..+.+ -+..|..++.+.+.-++.+...
T Consensus 313 lcrD~~q~~L~~Ev~~l~~-~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 313 LCRDPPQYGLIEEVKELRE-SIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 0112356777788887774 6677777777776666665443
No 258
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=70.66 E-value=31 Score=41.86 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=50.5
Q ss_pred eeEEEeC-CCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC----------C
Q 003591 108 VSRISIN-RNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS----------D 176 (808)
Q Consensus 108 i~~i~~s-~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s----------d 176 (808)
---+.+. -+..+.||||+|.+.|-++-+-. + . -+|.++ .|+ +..|=.|.-.|.. .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~-k-v---gk~~s~-----lyH----S~ciW~Ve~~p~nv~~~~~aclp~ 392 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVN-K-V---GKCSSM-----LYH----SACIWDVENLPCNVHSPTAACLPR 392 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccc-c-c---cceeee-----eec----cceeeeeccccccccCcccccCCc
Confidence 3367788 45678899999999999997542 1 1 113222 122 2345555555631 5
Q ss_pred CEEEEEecCCeEEEEeccC
Q 003591 177 THLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 177 ~~LvvLtsD~~ir~ydl~~ 195 (808)
+|.++-.+||+||+||+..
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred cceeEecCCCcEEEeeccc
Confidence 8999999999999999976
No 259
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=70.36 E-value=1.2e+02 Score=30.25 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=44.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
...+|+.+-.+.+.-+..|+++.+.-..|..+...|.+.-+++.+.|..|.+=.+.|+
T Consensus 12 ~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~ 69 (157)
T PF04136_consen 12 YREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEIS 69 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4447888888888888999999999999998877777777777777766665555543
No 260
>PRK03629 tolB translocation protein TolB; Provisional
Probab=70.36 E-value=1.3e+02 Score=34.68 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=40.9
Q ss_pred eeeEEEeCCCCCEEEEEe----cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEE
Q 003591 107 EVSRISINRNGSALLLIG----SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G----~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
.+.....||+|+.||.+. ...|.+..+.. +. .+ .+. .+. ..+..+.|+|.+..-+++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~--G~-------~~--~l~--~~~-----~~~~~~~~SPDG~~La~~~ 261 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GA-------VR--QVA--SFP-----RHNGAPAFSPDGSKLAFAL 261 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CC-------eE--Ecc--CCC-----CCcCCeEECCCCCEEEEEE
Confidence 477899999999999863 34566666532 11 11 111 010 1123578999765444455
Q ss_pred ecCC--eEEEEeccC
Q 003591 183 SSDS--VFRLFNLAS 195 (808)
Q Consensus 183 tsD~--~ir~ydl~~ 195 (808)
..++ .|.+||+..
T Consensus 262 ~~~g~~~I~~~d~~t 276 (429)
T PRK03629 262 SKTGSLNLYVMDLAS 276 (429)
T ss_pred cCCCCcEEEEEECCC
Confidence 5555 467777754
No 261
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.25 E-value=68 Score=36.40 Aligned_cols=76 Identities=9% Similarity=0.201 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHH
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGA 713 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~a 713 (808)
+.-+.|..|=+.|-.++...+.+...+++++.+++++...+.+.+......-.+|.+.++.++.-+..++.-+||.
T Consensus 252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~ 327 (359)
T PF10498_consen 252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG 327 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3456666777777777777777777788888888877777777777766667777777777666333566666653
No 262
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.19 E-value=1.4 Score=54.25 Aligned_cols=63 Identities=22% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 636 AHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 636 ~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.+.+..++++.+..++.+++....++.++..+++.+..+...+.+.++++.++.+.+...++.
T Consensus 84 ~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~ 146 (722)
T PF05557_consen 84 HERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEE 146 (722)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888999999999999999998888888888888888777777766665
No 263
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.00 E-value=59 Score=38.17 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhh-------hhHH
Q 003591 716 ALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSL-------VNSE 788 (808)
Q Consensus 716 ~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~-------~i~e 788 (808)
...+++..++. ++...+.++.+++++++.+..+..+..............--..|+..++..|+++.. .+.+
T Consensus 201 ~~~~~l~~l~~-~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~ 279 (498)
T TIGR03007 201 DYYSEISEAQE-ELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIA 279 (498)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence 34455655553 555666666666666666555433211000000000001112445555555555543 4556
Q ss_pred HHHHHHHHHHHHhhh
Q 003591 789 NLKKVKLVESALKKQ 803 (808)
Q Consensus 789 ~~~k~~~~~~~~~~~ 803 (808)
+.+++..++..++..
T Consensus 280 l~~qi~~l~~~l~~~ 294 (498)
T TIGR03007 280 TKREIAQLEEQKEEE 294 (498)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666666665443
No 264
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=69.83 E-value=61 Score=35.39 Aligned_cols=122 Identities=13% Similarity=0.040 Sum_probs=77.4
Q ss_pred CCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEE
Q 003591 51 APKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCV 130 (808)
Q Consensus 51 ~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~V 130 (808)
.-.|-++..-|+.|-+..++.+.++.-+|+.+. .-.+|. . .-.|..++++||--.||.....+|-|
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----------~lysl~--a--~~~v~sl~fspnrywL~~at~~sIkI 258 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----------NLYSLE--A--FDIVNSLCFSPNRYWLCAATATSIKI 258 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCc----------eeEecc--C--CCeEeeEEecCCceeEeeccCCceEE
Confidence 456667777788888888888888888887542 222232 1 24688999999999999999999999
Q ss_pred EEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 131 v~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
-+|-...-- ..+.++..-.........-....|-+. +.||.--.+||.||+|++..
T Consensus 259 wdl~~~~~v--------~~l~~d~~g~s~~~~~~~clslaws~d-G~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 259 WDLESKAVV--------EELKLDGIGPSSKAGDPICLSLAWSAD-GQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred Eeccchhhh--------hhccccccccccccCCcEEEEEEEcCC-CcEEEeeecCCcEEEEEeec
Confidence 888543211 011111100000111122233344332 57898899999999999864
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=69.74 E-value=2e+02 Score=32.59 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.2
Q ss_pred eeEEEeCCCCCEEEEEe---cCeEEEEEeCCC
Q 003591 108 VSRISINRNGSALLLIG---SDGLCVMYLYGR 136 (808)
Q Consensus 108 i~~i~~s~sG~~Lal~G---~~~v~Vv~LP~~ 136 (808)
..++.+||+|++|.+.. ...|.|+++..+
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 34899999999999987 569999988654
No 266
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.39 E-value=61 Score=38.82 Aligned_cols=90 Identities=17% Similarity=0.314 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 636 AHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER-----------------QSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 636 ~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~-----------------~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.++....++++...|+.++.++..++..++.++..++.+ -+.|..+|++.+.+-++|..+++.
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666666666666665532 356666677777777788877777
Q ss_pred Hhc---CC-CCCCCCCCHHHHHHHHHHhhhh
Q 003591 699 LRN---LP-GAHKKPLSGAEHALKAELDHFE 725 (808)
Q Consensus 699 L~~---l~-~~~~~~LS~aEk~~~~El~~~~ 725 (808)
|++ |. .-.+-|+..-|+.=.+.+....
T Consensus 507 l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e 537 (652)
T COG2433 507 LRKMRKLELSGKGTPVKVVEKLTLEAIEEAE 537 (652)
T ss_pred HHHHHhhhhcCCCcceehhhhhhHHHHHhHH
Confidence 553 21 1233566655555544444433
No 267
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.25 E-value=1.6e+02 Score=31.36 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=58.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HhcCCCCCCCCCCHHH
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQ---RLQH-LRNLPGAHKKPLSGAE 714 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~---R~~~-L~~l~~~~~~~LS~aE 714 (808)
-+.++..+.+.|+.|++.--.....++..+++.+.+-+.|..+++.+......|.- ++-. |..+.....|.+.+.-
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR 129 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEER 129 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 34556666666666666655555566666666666666666666666666665554 3322 5554433444444322
Q ss_pred HHHHHHHhhhhh-h---hHHHHHHHHHHHHHHHHH
Q 003591 715 HALKAELDHFEG-V---ELDALHSSIEALRARLRR 745 (808)
Q Consensus 715 k~~~~El~~~~~-~---~l~~L~~~ie~lk~r~~~ 745 (808)
.+-...|+.+-+ . -...++.-+|.+..-+++
T Consensus 130 ~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~y 164 (251)
T PF11932_consen 130 QERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEY 164 (251)
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 333344444332 1 124567777777777666
No 268
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=69.24 E-value=20 Score=38.02 Aligned_cols=101 Identities=18% Similarity=0.264 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKH---HAPQLKQIIDDQHARLSEAQNKILK-VEERQSRLEERIDHAVQQHNILEQR 695 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~r---R~~~L~~e~~~Ql~~L~~l~e~i~~-l~~~~e~L~~Rie~a~~~Q~~L~~R 695 (808)
.|++.+..|. -.++.+.-++.||+. -...|+++++.++++|..-+.+.+- |+--.++++-=+..+.+|..-|..=
T Consensus 20 ~LhHQvlTLq-cQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~l 98 (277)
T PF15030_consen 20 QLHHQVLTLQ-CQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHL 98 (277)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554 333455555554543 3566777777666666543333221 1112344455555566666666655
Q ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHh
Q 003591 696 LQHLRNLPGAHKKPLSGAEHALKAELD 722 (808)
Q Consensus 696 ~~~L~~l~~~~~~~LS~aEk~~~~El~ 722 (808)
++.|++ ++...+-||+-.+.|...+-
T Consensus 99 lqel~R-Hg~~~~lLse~a~~mv~DvA 124 (277)
T PF15030_consen 99 LQELHR-HGPANHLLSELAQSMVNDVA 124 (277)
T ss_pred HHHHHH-hcchhHHHHHHHHHHHHHHH
Confidence 566665 22455778888888876664
No 269
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.22 E-value=83 Score=32.68 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPL 710 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~L 710 (808)
.|+.+...++.-+.+|+..++..-.-+ +.|. +-+ ..+.+.+..+|++..++++.+.+
T Consensus 97 ~Y~r~i~a~K~~l~~R~~~~~~~~~a~-k~l~-------Kar------~~k~~~ae~~~~~a~~~fe~iS~--------- 153 (198)
T cd07630 97 LYSRYSESEKDMLFRRTCKLIEFENAS-KALE-------KAK------PQKKEQAEEAKKKAETEFEEISS--------- 153 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HhH------HhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 888888899999999998887654221 1122 111 12334577888888888888774
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHH
Q 003591 711 SGAEHALKAELDHFEGVELDALHSSI 736 (808)
Q Consensus 711 S~aEk~~~~El~~~~~~~l~~L~~~i 736 (808)
.++.||.+++.+....+++.|
T Consensus 154 -----~~k~EL~rF~~~Rv~~fk~~l 174 (198)
T cd07630 154 -----LAKKELERFHRQRVLELQSAL 174 (198)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777764444444443
No 270
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=69.19 E-value=25 Score=40.97 Aligned_cols=79 Identities=20% Similarity=0.371 Sum_probs=48.9
Q ss_pred cceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCC------------
Q 003591 164 IRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDH------------ 231 (808)
Q Consensus 164 ~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~------------ 231 (808)
--|.-|.|||. |.+|.|..-.+-|-+|+...+.-.-.|.+.-. + +-..+.+.||++.+
T Consensus 201 e~v~~a~FHPt-d~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-----~----ekk~Vl~v~F~engdviTgDS~G~i~ 270 (626)
T KOG2106|consen 201 EVVFLATFHPT-DPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-----R----EKKFVLCVTFLENGDVITGDSGGNIL 270 (626)
T ss_pred ceEEEEEeccC-CCcEEEEeCCceEEEEEccCCceEEEeecccc-----c----cceEEEEEEEcCCCCEEeecCCceEE
Confidence 35788999997 56788888889999998866433222222110 1 11357889998631
Q ss_pred CCCc----eEEEEEecCccEEEEcc
Q 003591 232 LWDR----FSVFVLFSDGSIYILCP 252 (808)
Q Consensus 232 ~w~~----~tLyiL~~~GdIYalcP 252 (808)
-|+. +|=-+.--+|-||+||=
T Consensus 271 Iw~~~~~~~~k~~~aH~ggv~~L~~ 295 (626)
T KOG2106|consen 271 IWSKGTNRISKQVHAHDGGVFSLCM 295 (626)
T ss_pred EEeCCCceEEeEeeecCCceEEEEE
Confidence 2322 22222334899999987
No 271
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.13 E-value=19 Score=42.16 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVE 797 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~ 797 (808)
...|.+.|+=+.+.|.+..+||+.++
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554
No 272
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.92 E-value=1.8e+02 Score=32.18 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=40.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
.+....+..|..+++.-..++.++.++|..+.+.+....+.|-.+..+-+++.++++.++.
T Consensus 154 ~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 154 LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666667777777777766666666666666666666666666655
No 273
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=68.88 E-value=56 Score=30.31 Aligned_cols=51 Identities=10% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 649 QLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 649 ~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
.+-.+++.+-+.+....|.|+.+..+...-.++++.+.+.-..+.+|++++
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444555555555555566677777777888888888875
No 274
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=68.87 E-value=29 Score=32.74 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhc
Q 003591 676 SRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEG--VELDALHSSIEALRARLRRLTQ 748 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~--~~l~~L~~~ie~lk~r~~~~~~ 748 (808)
+.+..|=+.+.+++..|.+.+.++..+.+....-...|++...+|.+.... .++..|...|+.++.....+..
T Consensus 28 ~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 28 EQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333332222222333333433333332221 2445555555555555544433
No 275
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.83 E-value=26 Score=43.75 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 634 EYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE----RQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 634 ~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~----~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
..|.....+...+++.|-+.+.++..++++.++++.+..+ ..+.|.+++++++++.+++.+++..
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ 568 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEK 568 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444433333333332 2334444444444455544444443
No 276
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.80 E-value=31 Score=43.20 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 003591 620 TLHQYFNLFQ 629 (808)
Q Consensus 620 ~L~~a~~~l~ 629 (808)
.+.+|-+++.
T Consensus 503 ii~~A~~~~~ 512 (782)
T PRK00409 503 IIEEAKKLIG 512 (782)
T ss_pred HHHHHHHHHh
Confidence 4455555444
No 277
>PRK00106 hypothetical protein; Provisional
Probab=68.79 E-value=1.1e+02 Score=36.53 Aligned_cols=9 Identities=22% Similarity=0.003 Sum_probs=4.4
Q ss_pred hhHHHHHHH
Q 003591 785 VNSENLKKV 793 (808)
Q Consensus 785 ~i~e~~~k~ 793 (808)
+|.|..+|+
T Consensus 298 rIEe~v~k~ 306 (535)
T PRK00106 298 RIEELVEKN 306 (535)
T ss_pred HHHHHHHHH
Confidence 445555444
No 278
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=68.73 E-value=1.6e+02 Score=31.18 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=94.8
Q ss_pred EEeCCceEEEEeCCCcEEEE------EeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEE-ecCeEE
Q 003591 57 AWDGASRLYYWDQNAQCLHR------ISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGLC 129 (808)
Q Consensus 57 ~~~~~~~l~~w~~~~~~l~~------~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~-G~~~v~ 129 (808)
+..-.+.||+...|..-+.+ +++|.+...+.. ++.-+.+-+..-.-.|.-..-||.|.++|-= +.++|-
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~----pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ----PPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCcccccccccC----CCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 34458889999888654444 466776644221 2222333233334678889999999998863 334555
Q ss_pred EEEeCCCC----CC---C--CCCce----------------------eeEEEEecceeeeccCCccceeEEEEecCC--C
Q 003591 130 VMYLYGRT----CS---S--DNKTI----------------------ICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--D 176 (808)
Q Consensus 130 Vv~LP~~~----~~---~--d~~~~----------------------~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s--d 176 (808)
|+...... +. + -+..+ .|+.|.-+=. .---+|.+| -
T Consensus 115 ~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-----------~g~~~~a~sght 183 (350)
T KOG0641|consen 115 VLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-----------RGQGFHALSGHT 183 (350)
T ss_pred EEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-----------CCCcceeecCCc
Confidence 55444322 11 0 01111 1443332211 011367777 4
Q ss_pred CEEEEEec-----------CCeEEEEeccCCCCCCceEEEeccCCCCCCC-CCCCcceEEEEecCC-------CCCCceE
Q 003591 177 THLGILSS-----------DSVFRLFNLASDVMQPEQEYYLQPVEPGRYR-NAASICPVDFSFGGD-------HLWDRFS 237 (808)
Q Consensus 177 ~~LvvLts-----------D~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~-~~~~~~~vsf~Fg~~-------~~w~~~t 237 (808)
+|++.|++ |.+||+||+..... ++.....+.. +..+-.+++.|..|. +.=+..+
T Consensus 184 ghilalyswn~~m~~sgsqdktirfwdlrv~~~-------v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 184 GHILALYSWNGAMFASGSQDKTIRFWDLRVNSC-------VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred ccEEEEEEecCcEEEccCCCceEEEEeeeccce-------eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence 78888876 78999999976322 1111111111 111123445555542 2335788
Q ss_pred EEEEecCccEEEEcc
Q 003591 238 VFVLFSDGSIYILCP 252 (808)
Q Consensus 238 LyiL~~~GdIYalcP 252 (808)
||=..++--|-.++|
T Consensus 257 lydirg~r~iq~f~p 271 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHP 271 (350)
T ss_pred EEEeeCCceeeeeCC
Confidence 999988888888888
No 279
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=68.65 E-value=42 Score=39.31 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=65.3
Q ss_pred eEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCC--CcceeeeEEEeCCCCCEEEE-EecCeEEE
Q 003591 54 NLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADV--KLNFEVSRISINRNGSALLL-IGSDGLCV 130 (808)
Q Consensus 54 nll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~--~l~f~i~~i~~s~sG~~Lal-~G~~~v~V 130 (808)
-+|+|.+|+.|=+|+-++.. +.-+++++.+ .....+.....|++|.++|- ++.-.|-+
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k-------------------~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~ 343 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTK-------------------SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQI 343 (641)
T ss_pred ceEEecCCCcEEEEecCCch-------------------hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceee
Confidence 36888889999999987621 1122333221 11235678899999998664 46667777
Q ss_pred EEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCC
Q 003591 131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQP 200 (808)
Q Consensus 131 v~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p 200 (808)
-..+....... +.|.. -| .+...|.++.|-+.+. .|+-=..|+++++|||.. +.+|
T Consensus 344 W~~~~~~v~p~--------~~vk~-AH---~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq-~kkp 399 (641)
T KOG0772|consen 344 WDKGSRTVRPV--------MKVKD-AH---LPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQ-FKKP 399 (641)
T ss_pred eecCCcccccc--------eEeee-cc---CCCCceeEEEeccccc-hhhhccCCCceeeeeccc-cccc
Confidence 77654322100 11221 11 2333566666655542 233334689999999966 4444
No 280
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=68.46 E-value=41 Score=39.94 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003591 657 QHARLSEAQNKILKVE 672 (808)
Q Consensus 657 Ql~~L~~l~e~i~~l~ 672 (808)
++.+..++.+.++-++
T Consensus 212 ~l~~~~e~~~~l~l~~ 227 (511)
T PF09787_consen 212 YLRESGELQEQLELLK 227 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 281
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=68.46 E-value=1.9e+02 Score=31.76 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=55.6
Q ss_pred CceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEec
Q 003591 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHP 173 (808)
Q Consensus 94 ~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP 173 (808)
.++.+.-. .-+|-.+.+|++.+-+ +.|++.-.|..-..- +. |+ |.+.+. +. +-=|.+|+|||
T Consensus 97 ~t~~f~GH---~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~-g~-------ck-~t~~~~----~~-~~WVscvrfsP 158 (315)
T KOG0279|consen 97 STRRFVGH---TKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTL-GV-------CK-YTIHED----SH-REWVSCVRFSP 158 (315)
T ss_pred EEEEEEec---CCceEEEEecCCCcee-ecCCCcceeeeeeec-cc-------EE-EEEecC----CC-cCcEEEEEEcC
Confidence 45566633 3588999999986654 567766555432211 11 43 333321 11 34689999999
Q ss_pred CC-CCEEEEEecCCeEEEEeccC
Q 003591 174 YS-DTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 174 ~s-d~~LvvLtsD~~ir~ydl~~ 195 (808)
-. ++.||=-..|.++|+||+..
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCC
Confidence 97 88888889999999999966
No 282
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.32 E-value=1.2e+02 Score=34.21 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 003591 731 ALHSSIEALRAR 742 (808)
Q Consensus 731 ~L~~~ie~lk~r 742 (808)
.++..+++++..
T Consensus 214 ~~~~~l~~~~~~ 225 (423)
T TIGR01843 214 RLEAELEVLKRQ 225 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 283
>PRK01156 chromosome segregation protein; Provisional
Probab=68.06 E-value=1.2e+02 Score=38.37 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003591 677 RLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 677 ~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.+.+++..+..+..+|.++++.
T Consensus 253 ~~e~~i~ele~~l~el~~~~~e 274 (895)
T PRK01156 253 RYESEIKTAESDLSMELEKNNY 274 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333
No 284
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=67.94 E-value=2.2e+02 Score=32.43 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=30.9
Q ss_pred cCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 766 YVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 766 ~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
.-.|.|+.+.-...+.-.+.|.+-..|++.+|..+.-
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~ 270 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQAR 270 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888899999999999999999987754
No 285
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=67.94 E-value=26 Score=38.57 Aligned_cols=141 Identities=17% Similarity=0.158 Sum_probs=78.3
Q ss_pred CCccccccccCCCCCcccccccccCCCCCCCCCCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEe
Q 003591 19 TPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVM 98 (808)
Q Consensus 19 ~~~~~~~w~~L~~hpiF~~~~~~~~~~~~~~~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L 98 (808)
-|||+..=..-..||+-.++.+.-+......+-||.-+ .+-..++.|+..-+.-.. .+...+|++
T Consensus 149 ~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I--------LiS~srD~tvKlFDfsK~-------saKrA~K~~ 213 (430)
T KOG0640|consen 149 KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI--------LISGSRDNTVKLFDFSKT-------SAKRAFKVF 213 (430)
T ss_pred chhhhccCCcccCCceEeehhhccCcccceeecchhhe--------EEeccCCCeEEEEecccH-------HHHHHHHHh
Confidence 56666555555668999988774322222223344433 222333344333333111 113457777
Q ss_pred ecCCCcceeeeEEEeCCCCCEEEEEecCe-EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCC
Q 003591 99 RADVKLNFEVSRISINRNGSALLLIGSDG-LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDT 177 (808)
Q Consensus 99 ~~~~~l~f~i~~i~~s~sG~~Lal~G~~~-v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~ 177 (808)
. + ...|+.|.+-|+|.||++-+.|- +.+-.+... .|-.-.. |+ +.....|.+|...+- ++
T Consensus 214 q-d---~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~---------Qcfvsan-Pd----~qht~ai~~V~Ys~t-~~ 274 (430)
T KOG0640|consen 214 Q-D---TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY---------QCFVSAN-PD----DQHTGAITQVRYSST-GS 274 (430)
T ss_pred h-c---cceeeeEeecCCCceEEEecCCCceeEEeccce---------eEeeecC-cc----cccccceeEEEecCC-cc
Confidence 6 2 24689999999999999998884 333333322 1211000 11 122345777765443 45
Q ss_pred EEEEEecCCeEEEEec
Q 003591 178 HLGILSSDSVFRLFNL 193 (808)
Q Consensus 178 ~LvvLtsD~~ir~ydl 193 (808)
--|+-..|+.||+||=
T Consensus 275 lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDG 290 (430)
T ss_pred EEEEeccCCcEEeecc
Confidence 5678889999999994
No 286
>PLN03188 kinesin-12 family protein; Provisional
Probab=67.77 E-value=77 Score=41.17 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER-----------QSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~-----------~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
+|+...+..+.|++. -..|.++++..|+.=..|.++++..-.+ -..|.+++-++..||..|++-++.+
T Consensus 1062 ~wislteelr~eles-~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dv 1140 (1320)
T PLN03188 1062 KWISLAEELRTELDA-SRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDV 1140 (1320)
T ss_pred hheechHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666665 4444444444444444444444443322 2455666666666667777777776
Q ss_pred hc-CCCCCCCC-CCHHHHHHHHHHhhhh
Q 003591 700 RN-LPGAHKKP-LSGAEHALKAELDHFE 725 (808)
Q Consensus 700 ~~-l~~~~~~~-LS~aEk~~~~El~~~~ 725 (808)
++ ..+++.+. =|.==+++..||-.+.
T Consensus 1141 kkaaakag~kg~~~~f~~alaae~s~l~ 1168 (1320)
T PLN03188 1141 KKAAARAGVRGAESKFINALAAEISALK 1168 (1320)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 66 44455443 1333333344555444
No 287
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=67.72 E-value=1.6e+02 Score=30.63 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhccc
Q 003591 790 LKKVKLVESALKKQESS 806 (808)
Q Consensus 790 ~~k~~~~~~~~~~~~~~ 806 (808)
..+++++|+.|..+.++
T Consensus 138 esRI~dLE~~L~~~n~~ 154 (196)
T PF15272_consen 138 ESRIADLERQLNSRNNS 154 (196)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 36788888888755443
No 288
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=67.55 E-value=9 Score=45.47 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=46.8
Q ss_pred ccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEe
Q 003591 163 VIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLF 242 (808)
Q Consensus 163 ~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~ 242 (808)
.-.|...+|||+.-.-|.+-..|.+|++||+....... .|. |- ...+-+|+.+++ .--+--..
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~----~l~----gH-----tdqIf~~AWSpd----Gr~~AtVc 739 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS----RLV----GH-----TDQIFGIAWSPD----GRRIATVC 739 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh----eec----cC-----cCceeEEEECCC----Ccceeeee
Confidence 34699999999998888899999999999997733211 111 00 012445555552 22333445
Q ss_pred cCccEEEEcc
Q 003591 243 SDGSIYILCP 252 (808)
Q Consensus 243 ~~GdIYalcP 252 (808)
.||-|+.--|
T Consensus 740 KDg~~rVy~P 749 (1012)
T KOG1445|consen 740 KDGTLRVYEP 749 (1012)
T ss_pred cCceEEEeCC
Confidence 6788777666
No 289
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=67.54 E-value=30 Score=33.07 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 649 QLKQIIDDQHARLSEAQNKILKVEE 673 (808)
Q Consensus 649 ~L~~e~~~Ql~~L~~l~e~i~~l~~ 673 (808)
..+..++-|++++..+.+++++|.+
T Consensus 27 ~qk~~le~qL~E~~~al~Ele~l~e 51 (119)
T COG1382 27 LQKQQLEAQLKEIEKALEELEKLDE 51 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3445556666667766666666653
No 290
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=67.53 E-value=92 Score=33.05 Aligned_cols=52 Identities=13% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhh
Q 003591 675 QSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEG 726 (808)
Q Consensus 675 ~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~ 726 (808)
...|-.=+-++.++|++|+.|++.+.+ +....--||=++=-.|++-+-.|+.
T Consensus 66 SkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~wkk~~~~ldK 118 (231)
T cd07643 66 TKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEEWKKVANQLDK 118 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445556666777788888888888666 5555566777776677777766654
No 291
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=67.52 E-value=90 Score=32.99 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPL 710 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~L 710 (808)
.|+.+...|+.-+.+|+..++..-.-| +.|...++ + .+.+.+|+.+|.+-.++++.+-
T Consensus 114 ~Y~r~~~A~K~~l~rR~ral~~~q~A~-k~L~KaR~-------k----~~~v~~AE~~~~~a~~~Fe~iS---------- 171 (219)
T cd07621 114 YYMRDTQAAKDLLYRRLRCLANYENAN-KNLEKARA-------K----NKDVHAAEAAQQEACEKFESMS---------- 171 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHh-------c----hhhHHHHHHHHHHHHHHHHHHH----------
Confidence 788888888888889988887654222 12222221 1 2556667778888888888866
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHH
Q 003591 711 SGAEHALKAELDHFEGVELDALHSSI 736 (808)
Q Consensus 711 S~aEk~~~~El~~~~~~~l~~L~~~i 736 (808)
+..++||.+++.+....++..|
T Consensus 172 ----~~~k~El~rF~~~Rv~~fk~~l 193 (219)
T cd07621 172 ----ESAKQELLDFKTRRVAAFRKNL 193 (219)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678887764444444443
No 292
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=67.42 E-value=35 Score=39.46 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003591 619 STLHQYFNLFQENYVEYAHK 638 (808)
Q Consensus 619 ~~L~~a~~~l~e~~~~~~~~ 638 (808)
+.=..|+++|+|.++.+-|+
T Consensus 361 ~~KnAAA~VLqeTW~i~K~t 380 (489)
T KOG3684|consen 361 EHKNAAANVLQETWLIYKHT 380 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34456788888887766654
No 293
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.28 E-value=3.6e+02 Score=34.56 Aligned_cols=151 Identities=15% Similarity=0.232 Sum_probs=78.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH---------------------HHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQ--------SRLEERIDH---------------------AVQQHN 690 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~--------e~L~~Rie~---------------------a~~~Q~ 690 (808)
..++..|+..+.+....-..++..+.++|+++.+.- ..|.+.+.. -.++-+
T Consensus 253 i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e 332 (1174)
T KOG0933|consen 253 IEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLE 332 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 456788888888888888888888888888887521 112222211 112222
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCc
Q 003591 691 ILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEG--VELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQ 768 (808)
Q Consensus 691 ~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~--~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (808)
+|..++..++. -|=.+|+++.+=...++. +....+..-++..+..++.+..-..+. . ..-..=
T Consensus 333 ~i~~~i~e~~~-------~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~----~----~~e~~l 397 (1174)
T KOG0933|consen 333 EIRKNIEEDRK-------KLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSN----E----DEEKTL 397 (1174)
T ss_pred HHHHhHHHHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----c----cchhhH
Confidence 22222222222 111233333322222111 111233333444444444433221110 0 011123
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcc
Q 003591 769 DAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQES 805 (808)
Q Consensus 769 ~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~~ 805 (808)
.+|+..-|..+.+.+.-|+-+..|++.++-.|+..|.
T Consensus 398 ~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~ 434 (1174)
T KOG0933|consen 398 EDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREG 434 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677777888888888888888888888888877653
No 294
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=67.21 E-value=99 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.153 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 003591 636 AHKVHFELKHHAPQLKQIIDDQ 657 (808)
Q Consensus 636 ~~~v~~el~rR~~~L~~e~~~Q 657 (808)
..++.++.++.+..+-++.+++
T Consensus 42 m~~i~~e~Ek~i~~~i~e~~~~ 63 (207)
T PF05010_consen 42 MRKIMEEYEKTIAQMIEEKQKQ 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3355556666666665555444
No 295
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.17 E-value=1.8e+02 Score=34.96 Aligned_cols=8 Identities=13% Similarity=0.430 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 003591 715 HALKAELD 722 (808)
Q Consensus 715 k~~~~El~ 722 (808)
+.|.++|+
T Consensus 359 ~~~~~~i~ 366 (582)
T PF09731_consen 359 REFEKEIK 366 (582)
T ss_pred HHHHHHHH
Confidence 44444443
No 296
>PRK03629 tolB translocation protein TolB; Provisional
Probab=67.11 E-value=2e+02 Score=33.05 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=42.2
Q ss_pred eeEEEeCCCCCEEEEEec----CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 108 VSRISINRNGSALLLIGS----DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 108 i~~i~~s~sG~~Lal~G~----~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
+.....||+|+.|++... ..|.++.+... . ++ ++- .....+....|+|.+. .|+...
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg--~-------~~--~lt-------~~~~~~~~~~wSPDG~-~I~f~s 305 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--Q-------IR--QVT-------DGRSNNTEPTWFPDSQ-NLAYTS 305 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC--C-------EE--Ecc-------CCCCCcCceEECCCCC-EEEEEe
Confidence 345789999999998733 45777776431 1 11 121 1112456788999764 444444
Q ss_pred c-CCeEEEEeccCCCC
Q 003591 184 S-DSVFRLFNLASDVM 198 (808)
Q Consensus 184 s-D~~ir~ydl~~~~~ 198 (808)
. ++..++|.++.+..
T Consensus 306 ~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 306 DQAGRPQVYKVNINGG 321 (429)
T ss_pred CCCCCceEEEEECCCC
Confidence 3 45677786655443
No 297
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.01 E-value=95 Score=36.13 Aligned_cols=111 Identities=16% Similarity=0.123 Sum_probs=75.1
Q ss_pred EEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCC
Q 003591 57 AWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGR 136 (808)
Q Consensus 57 ~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~ 136 (808)
++. |++|++..+.+..+-+.+++.. ...|.|. .. .+.|+.+-++|.+..+++.|+.+-.|-. .+-
T Consensus 76 fR~-DG~LlaaGD~sG~V~vfD~k~r----------~iLR~~~--ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~-~d~ 140 (487)
T KOG0310|consen 76 FRS-DGRLLAAGDESGHVKVFDMKSR----------VILRQLY--AH-QAPVHVTKFSPQDNTMLVSGSDDKVVKY-WDL 140 (487)
T ss_pred eec-CCeEEEccCCcCcEEEeccccH----------HHHHHHh--hc-cCceeEEEecccCCeEEEecCCCceEEE-EEc
Confidence 444 8889988888776666553311 1234444 33 4788899999999999999887644322 121
Q ss_pred CCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 003591 137 TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (808)
Q Consensus 137 ~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~ 196 (808)
+++ .++.. .+.+.--|+...|||..+..+|.=.-|+.||+||+...
T Consensus 141 s~a---------~v~~~-----l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 141 STA---------YVQAE-----LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred CCc---------EEEEE-----ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 122 12222 23345579999999999999999999999999999663
No 298
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.94 E-value=68 Score=27.45 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 642 ELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 642 el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
.|-.+|.+|+.|=. .+++...........|.+|.+.|..|-+.+-.|+..|
T Consensus 11 ~Li~~~~~L~~EN~-------~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 11 HLLEYLERLKSENR-------LLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35666777766653 3445555666666677788888888888888887765
No 299
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=66.83 E-value=83 Score=28.87 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 618 RSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQ---IIDDQHARLSEAQNKILKVEERQSRLEERIDHAV 686 (808)
Q Consensus 618 ~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~---e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~ 686 (808)
.++|.+.-+....+|......+.. |.+-++.|.. +++.++.+|.++.+.+.++......|++...++.
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~-l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAG-LEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777667777778766655544 7776666554 4566666677777777777666666655544433
No 300
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.61 E-value=1.5e+02 Score=29.82 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhH
Q 003591 670 KVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVEL 729 (808)
Q Consensus 670 ~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l 729 (808)
..++....|..+++..+...+.|...+..+. .+...|.+.|..|+.|.+++.+...
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~----~q~~rlee~e~~l~~e~~~l~er~~ 141 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLS----DQSSRLEEREAELKKEYNRLHERER 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhccccchhHHHHHHHHHHHHHHHH
Confidence 3444566778888887777777776666544 3556788999999999999886333
No 301
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=66.55 E-value=26 Score=46.56 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=89.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHH------
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAE------ 714 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aE------ 714 (808)
+-+++|-+.|-.+|+-+-.++.++..-...+..... -.-++++.+|+.|..|-..|+++...+.-.|..+.
T Consensus 880 ev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~gh---p~sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~ 956 (2473)
T KOG0517|consen 880 EVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGH---PNSDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFH 956 (2473)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777776666666666665555553221 12344556777777777777665544444444332
Q ss_pred ------HHHHHHHhhhhh----------------hhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHH
Q 003591 715 ------HALKAELDHFEG----------------VELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQI 772 (808)
Q Consensus 715 ------k~~~~El~~~~~----------------~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 772 (808)
+.|+.|-.++-+ ..+..|+..+..+.+|+..+..-..+.- .--++|-
T Consensus 957 ~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~-----------~~~Paea 1025 (2473)
T KOG0517|consen 957 LECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVE-----------EEHPAEA 1025 (2473)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-----------hcChHHH
Confidence 466666533221 2344566666666666666544322110 0247788
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 773 SQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 773 ~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
..|...++++..+-.++.++++.-+..|..
T Consensus 1026 ~~i~~r~~el~~~w~~l~~~~~~~~~~l~e 1055 (2473)
T KOG0517|consen 1026 QAINARIAELQALWEQLQQRLQEREERLEE 1055 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998888888888887776643
No 302
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=66.27 E-value=3e+02 Score=35.18 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhc
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVESALKKQE 804 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~ 804 (808)
+..++..+.+.+..-....+|...||..+-+-|
T Consensus 511 ~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE 543 (1195)
T KOG4643|consen 511 KNELKEQYKTCDIQYELLSNKLEELEELLGNLE 543 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344445555555555555556666655555544
No 303
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=66.21 E-value=2.1e+02 Score=34.57 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=81.5
Q ss_pred eeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC-CCEEEEEe
Q 003591 107 EVSRISINRNGSALLLIGSD--GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILS 183 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~~--~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s-d~~LvvLt 183 (808)
+|..+.++|.--.+++.|.. +|++=.+-..... ...+-+... ..+...+.++.|-... +.-++.+.
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~----~~s~ls~~~-------~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT----PPSGLSALE-------VSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCC----CCccccccc-------ccCCcCeEEEEEeccCCCCceEEEe
Confidence 68899999999999999875 5555555332111 011111121 2345679999998865 45688888
Q ss_pred cCCeEEEEeccCCCCCCceEEEeccCC-CCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 184 SDSVFRLFNLASDVMQPEQEYYLQPVE-PGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~p~q~~~l~~~~-~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
+|+.|..|++.. ...|.+..-+.+.. .|-... ....+.++.|-+. .+...+|-+..|-||.-|=
T Consensus 313 sDG~i~~W~~~~-l~~P~e~~~~~~~~~~~~~~~-~~~~~t~~~F~~~---~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 313 SDGSICSWDTDM-LSLPVEGLLLESKKHKGQQSS-KAVGATSLKFEPT---DPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred cCCcEeeeeccc-cccchhhcccccccccccccc-cccceeeEeeccC---CCceEEEEcCCcEEEEEec
Confidence 899999998855 44455444333211 111100 1135678888763 4566788889999999554
No 304
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=66.20 E-value=65 Score=35.51 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=69.8
Q ss_pred ecCCCcceeeeEEEeCCCCCEEEEEec--CeEEEEEeCCC--C-CC---CCCCceeeEEEEecceeeec-----------
Q 003591 99 RADVKLNFEVSRISINRNGSALLLIGS--DGLCVMYLYGR--T-CS---SDNKTIICRTVSVGSQIYFS----------- 159 (808)
Q Consensus 99 ~~~~~l~f~i~~i~~s~sG~~Lal~G~--~~v~Vv~LP~~--~-~~---~d~~~~~c~t~~v~~~~~~~----------- 159 (808)
-++|| +..|..|.+||....|+..|+ .+|.|-++-.. . ++ .-..++.|-++.=+.+.-|.
T Consensus 22 v~~pP-~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 22 VPNPP-EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cCCCc-ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 33566 688999999998899988887 68888888642 1 11 00122333333222211111
Q ss_pred ---------cCCccceeEEEEecCC-CCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCC
Q 003591 160 ---------SSNVIRTLQVSWHPYS-DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAA 218 (808)
Q Consensus 160 ---------~~~~~~I~qv~WHP~s-d~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~ 218 (808)
.-+..+|+.++|-+.. -.||++=.=|-+||+||... ..|.-++.| ++|.|.++
T Consensus 101 L~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~--~~pv~t~~L----PeRvYa~D 163 (347)
T KOG0647|consen 101 LASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS--SNPVATLQL----PERVYAAD 163 (347)
T ss_pred ccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC--CCeeeeeec----cceeeehh
Confidence 1144567888888776 58888888899999999864 223323332 56766654
No 305
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.15 E-value=1.1e+02 Score=33.28 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEE 673 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~ 673 (808)
|+.-...|+...+.|..++.++.+.+..+.+
T Consensus 122 Ia~L~rqlq~lk~~qqdEldel~e~~~~el~ 152 (258)
T PF15397_consen 122 IANLVRQLQQLKDSQQDELDELNEMRQMELA 152 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666667766666666664
No 306
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=66.01 E-value=69 Score=34.80 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 710 LSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 710 LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
+.+...+++.-|..++. +...|..++.-++.|++++..+
T Consensus 226 ~~~~i~e~~~rl~~l~~-~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 226 IKERITEMKGRLGELEM-ESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 33455566666666663 6667777777788888877544
No 307
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=65.89 E-value=2.2e+02 Score=31.62 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhc
Q 003591 774 QLRSLMEKLSLVNSENLKKVKLVESALKKQE 804 (808)
Q Consensus 774 ~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~ 804 (808)
.||..|...-++-..+.+.+-.-||+|+.-+
T Consensus 272 rLqr~L~~E~erreal~R~lsesEsslE~dd 302 (310)
T PF09755_consen 272 RLQRKLQREVERREALCRHLSESESSLEMDD 302 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4566666666666666666666777776543
No 308
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.82 E-value=3.1e+02 Score=34.98 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCCCCCHHHHH-H-HHHHhhhh
Q 003591 655 DDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-------LPGAHKKPLSGAEHA-L-KAELDHFE 725 (808)
Q Consensus 655 ~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-------l~~~~~~~LS~aEk~-~-~~El~~~~ 725 (808)
..-+..|+.+.++|....+.=..+.-+|..+.+.++.+..|+..|+. -.+.++.--|.+||. | .+|+..+.
T Consensus 324 ~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~ 403 (1200)
T KOG0964|consen 324 NLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLK 403 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHH
Confidence 33455555666666655555556666777777777777777766544 133455666777775 3 57777776
Q ss_pred h
Q 003591 726 G 726 (808)
Q Consensus 726 ~ 726 (808)
.
T Consensus 404 ~ 404 (1200)
T KOG0964|consen 404 R 404 (1200)
T ss_pred H
Confidence 4
No 309
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=65.52 E-value=47 Score=34.86 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHH-HHHHHHHhh
Q 003591 663 EAQNKILKVEER----QSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAE-HALKAELDH 723 (808)
Q Consensus 663 ~l~e~i~~l~~~----~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aE-k~~~~El~~ 723 (808)
+.+++++-|... +++.-.-+|.+...|++|.+++..|.. ..+...++++..| |....++..
T Consensus 38 dA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~~~w~~l~~~~~~~~e~~~l~~~~~~ 104 (214)
T PF04344_consen 38 DARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELKARWQRLMARELEPDEFRELAHETDA 104 (214)
T ss_dssp HHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 444554444433 455667788888888888888888654 3334456777776 333444443
No 310
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=65.44 E-value=2e+02 Score=30.82 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHH
Q 003591 715 HALKAELDHFEGVELDALHSSIEA 738 (808)
Q Consensus 715 k~~~~El~~~~~~~l~~L~~~ie~ 738 (808)
+.+++||.+++.+....+++.|+.
T Consensus 187 ~~ik~El~rFe~er~~Dfk~~v~~ 210 (234)
T cd07665 187 ATVRKEVIRFEKEKSKDFKNHIIK 210 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776555555554443
No 311
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.02 E-value=93 Score=39.65 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=11.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 778 LMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 778 ~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
.+++....+.++...++.++..+..
T Consensus 418 ~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 418 ELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 312
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.81 E-value=2.6e+02 Score=35.74 Aligned_cols=107 Identities=18% Similarity=0.269 Sum_probs=54.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHH
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQ---SRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAE 714 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~---e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aE 714 (808)
+.+.||+.+.+.|..-. .+|..++.++++++... -..+.|..+-.+.-+.|.++++.-- -.+..-|-|.+
T Consensus 188 ~LrqElEEK~enll~lr----~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d---~~ykerlmDs~ 260 (1195)
T KOG4643|consen 188 TLRQELEEKFENLLRLR----NELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD---TTYKERLMDSD 260 (1195)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC---CccchhhhhhH
Confidence 34455555554443332 44445555555555432 2334566666667777777766522 11222232221
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 003591 715 HALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGS 753 (808)
Q Consensus 715 k~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~ 753 (808)
. .++-++.+++ +=..|...-+.|+++++++.-|+.+.
T Consensus 261 f-ykdRveelke-dN~vLleekeMLeeQLq~lrarse~~ 297 (1195)
T KOG4643|consen 261 F-YKDRVEELKE-DNRVLLEEKEMLEEQLQKLRARSEGA 297 (1195)
T ss_pred H-HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhccccC
Confidence 1 1222233332 33456667778888888887777653
No 313
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=64.73 E-value=1.9e+02 Score=30.30 Aligned_cols=140 Identities=16% Similarity=0.106 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhh------
Q 003591 653 IIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEG------ 726 (808)
Q Consensus 653 e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~------ 726 (808)
|++.|++.|.+.+.+-..|-+-.+++..++..+.+.|++|..=+-.|. .+.|.||++=..|.+--+.+..
T Consensus 3 eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~----~k~p~l~~af~~~aet~k~l~kng~~Ll 78 (201)
T cd07660 3 ELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLS----QKSPELQEEFTYNAETQKLLCKNGETLL 78 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 677888888999999999999999999999999999999987777765 5778886544433333333221
Q ss_pred hhHHHHHHHHHHHH----------------HHHHHhhcCCCCCCCCccccccC-ccc-CcHHHHHHHHHHHHHhhhhhHH
Q 003591 727 VELDALHSSIEALR----------------ARLRRLTQSPEGSPGNQQRQTLG-KNY-VQDAQISQLRSLMEKLSLVNSE 788 (808)
Q Consensus 727 ~~l~~L~~~ie~lk----------------~r~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~q~~~l~~~L~~~~~~i~e 788 (808)
..+..+-+.|+++. +|.+|......-.- -...+..+ ..+ +...|.++ +..=++-..+-.|
T Consensus 79 ~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee-~~~~~~~~~~l~r~~~~q~~~-~~~k~kf~KLR~D 156 (201)
T cd07660 79 GALNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEA-LNLGPRDAATSARLEEAQRRF-QAHKDKYEKLRND 156 (201)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHH-cccCCCccchHhhHHHHHHHH-HHHHHHHHHHHHH
Confidence 11222333333332 33444333321110 00111111 222 44455555 6666777777788
Q ss_pred HHHHHHHHHH
Q 003591 789 NLKKVKLVES 798 (808)
Q Consensus 789 ~~~k~~~~~~ 798 (808)
-.-|++.+|.
T Consensus 157 V~~Kl~lLee 166 (201)
T cd07660 157 VSVKLKFLEE 166 (201)
T ss_pred HHHHHHHHhh
Confidence 8888888775
No 314
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.60 E-value=1.5e+02 Score=32.15 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 003591 729 LDALHSSIEALRARLRRLTQ 748 (808)
Q Consensus 729 l~~L~~~ie~lk~r~~~~~~ 748 (808)
+..|+.++++|.+++...+.
T Consensus 83 l~~Lq~ql~~l~akI~k~~~ 102 (258)
T PF15397_consen 83 LSKLQQQLEQLDAKIQKTQE 102 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554433
No 315
>PLN02939 transferase, transferring glycosyl groups
Probab=64.53 E-value=39 Score=42.90 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHH-----h-hhhhHHHHHHHHHHHHHHh
Q 003591 729 LDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEK-----L-SLVNSENLKKVKLVESALK 801 (808)
Q Consensus 729 l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~-----~-~~~i~e~~~k~~~~~~~~~ 801 (808)
.+.++.++|.|+..+.+.+.|..+....-+++.. +. .+...|+..|++ . +..+.-+.+|||.+|+-|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (977)
T PLN02939 295 YDCWWEKVENLQDLLDRATNQVEKAALVLDQNQD----LR-DKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQ 368 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH----HH-HHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3568888888888888877775543211111111 11 124445555532 2 2333334577777777664
No 316
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=64.33 E-value=1.8e+02 Score=34.24 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=78.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHH----------------HHHHHH
Q 003591 613 DSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQ-NKIL----------------KVEERQ 675 (808)
Q Consensus 613 ~~~e~~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~-e~i~----------------~l~~~~ 675 (808)
.+...+..|.+.+...+..++...+...+.+..+|..+-...+.++.....+. +++. ..+..-
T Consensus 246 eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~l 325 (473)
T PF14643_consen 246 EWYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEEL 325 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455777888888888888888888899999999998888888887744211 1111 122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hhc---CCCCCCCCCCHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHH
Q 003591 676 SRLEERIDHAVQQHNILEQRLQH-LRN---LPGAHKKPLSGAEHALKAELDHFEG---VELDALHSSIEALRARL 743 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~-L~~---l~~~~~~~LS~aEk~~~~El~~~~~---~~l~~L~~~ie~lk~r~ 743 (808)
+.++.++++....++...+++-+ ++. +-..+...++.-|....++|+.... .....++..++++..++
T Consensus 326 e~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~l 400 (473)
T PF14643_consen 326 EKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRL 400 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665555555 333 2223445566666666666655543 12233444444444443
No 317
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=63.81 E-value=3e+02 Score=33.09 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHH----HHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC
Q 003591 675 QSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHA----LKAELDHFEGVELDALHSSIEALRARLRRLTQSP 750 (808)
Q Consensus 675 ~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~----~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~ 750 (808)
...+.+-.+.+++++++...-++.|+.. ...-+=..|+. ...||..+.+ ...+.+.++.++-..+.....-.
T Consensus 472 ~~~~Q~~~e~~~~e~~e~~~al~el~~~---~~~~~~~~~~~~~~n~~sel~sl~~-~~~~~~~r~~~~~~~l~~~~~~~ 547 (607)
T KOG0240|consen 472 LSEIQEENEAAKDEVKEVLTALEELAVN---YDQKSEEKESKLSQNLKSELQSLQE-PSEHQSKRITELLSELRKDLGEI 547 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHhhhhhhhhHHHHHhhhh-cccchhHHHHHHHHHHHhhhccc
Confidence 3444444555556666666655555531 11111122222 3455555553 44556666666655554433332
Q ss_pred CCCCCCccccccCcccC--------cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003591 751 EGSPGNQQRQTLGKNYV--------QDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQ 803 (808)
Q Consensus 751 ~~~~~~~~~~~~~~~~~--------~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~ 803 (808)
....+... .+..++ ...-+.+...-|+.-.++|++..+|++-++....+-
T Consensus 548 ~~~~~~~~---~~~~~~q~e~~~~~~~~~~~~~~~~~~~~k~~~s~hs~~~~slt~~~~~~ 605 (607)
T KOG0240|consen 548 GWKIGTSS---EKRLYIQLEVLQSESNTKMEQEEKELRPCKLLISQHSAKKKSLTESEQSV 605 (607)
T ss_pred cccccCCc---ccceeeehhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhccchhhccc
Confidence 22111111 112222 111133333445555677888888888776655443
No 318
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=63.74 E-value=4.8e+02 Score=35.05 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 658 HARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 658 l~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
..++.++++++...+..-+...+++++++++.+.+.++.+.++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ 318 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRT 318 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555666555555543
No 319
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=63.64 E-value=56 Score=33.61 Aligned_cols=84 Identities=26% Similarity=0.395 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhh---hhHHHHHHH
Q 003591 659 ARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEG---VELDALHSS 735 (808)
Q Consensus 659 ~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~---~~l~~L~~~ 735 (808)
.++..+++++..++.+-+.|.++++.++...+.=.+|-..|.++. .|...-+...+||+.+.. +.+..+...
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~-----~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~ 143 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELE-----ELKKELKELKKELEKYSENDPEKIEKLKEE 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334444455555555555555555555543333344444443322 133345556666665543 344555555
Q ss_pred HHHHHHHHHHhh
Q 003591 736 IEALRARLRRLT 747 (808)
Q Consensus 736 ie~lk~r~~~~~ 747 (808)
+..++.-+++.+
T Consensus 144 ~~~~~~~anrwT 155 (188)
T PF03962_consen 144 IKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 320
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=63.56 E-value=1.3e+02 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003591 676 SRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKP 709 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~ 709 (808)
..+++.+...+-+-..+..|++.+..++....++
T Consensus 103 r~i~eq~~~lr~sL~l~~~~~~q~~~lP~~~~~~ 136 (835)
T COG3264 103 RTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQ 136 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCcc
Confidence 3444444444445555666677766666555554
No 321
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.56 E-value=2e+02 Score=35.89 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 003591 771 QISQLRSLMEKLSLVNSENLKKVKLVE 797 (808)
Q Consensus 771 q~~~l~~~L~~~~~~i~e~~~k~~~~~ 797 (808)
|.+.+.=.++.+.+.|.-+++++++++
T Consensus 912 eqee~~v~~~~~~~~i~alk~~l~dL~ 938 (970)
T KOG0946|consen 912 EQEELLVLLADQKEKIQALKEALEDLN 938 (970)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 344555566777777777776666654
No 322
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.55 E-value=3.6e+02 Score=33.59 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003591 689 HNILEQRL 696 (808)
Q Consensus 689 Q~~L~~R~ 696 (808)
..++..++
T Consensus 297 l~~l~~~~ 304 (754)
T TIGR01005 297 QAELRATI 304 (754)
T ss_pred HHHHHHHH
Confidence 33333333
No 323
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.53 E-value=56 Score=41.57 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003591 731 ALHSSIEALRARLRRLT 747 (808)
Q Consensus 731 ~L~~~ie~lk~r~~~~~ 747 (808)
.|+..++..+..+.-+.
T Consensus 536 ~l~~~~~~s~~d~s~l~ 552 (1041)
T KOG0243|consen 536 KLRRSLEESQDDLSSLF 552 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 324
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.50 E-value=93 Score=29.65 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 649 QLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNIL 692 (808)
Q Consensus 649 ~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L 692 (808)
.|+.+++.++.++..+++.+..+...-..|...+.++.--.++|
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777766666655555554444444
No 325
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=63.46 E-value=1.9e+02 Score=30.61 Aligned_cols=68 Identities=9% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLS----EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~----~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.|...+.....++-..+..+..+.+++.+++. .++..+.+....-++..++|+.+....+.....+++
T Consensus 80 ~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~ 151 (251)
T cd07653 80 QHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEK 151 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445444444444443333 344444444444555556666655555555544444
No 326
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.40 E-value=54 Score=28.97 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 003591 647 APQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNL 702 (808)
Q Consensus 647 ~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l 702 (808)
+..||-|++.-..+=..+.++++.++...+.|....+.+++.|..-.+|+.. |.++
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666655555556667777777777788999999999999999999988 4443
No 327
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.40 E-value=62 Score=30.14 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=38.3
Q ss_pred HHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQ--HARLSEAQNKILKVEERQSRLEERIDHAVQQHNIL 692 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Q--l~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L 692 (808)
..+..+|+..+..+++.. ..++..++-++..++++=..++++++.+....+-|
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344677777777777777 77777777888888877777777777765555544
No 328
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.33 E-value=3.5e+02 Score=33.08 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC
Q 003591 729 LDALHSSIEALRARLRRLTQSPEG 752 (808)
Q Consensus 729 l~~L~~~ie~lk~r~~~~~~~~~~ 752 (808)
...+..+++.+...+..+.++...
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555556666666665555443
No 329
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=63.29 E-value=1.1e+02 Score=37.66 Aligned_cols=108 Identities=16% Similarity=0.288 Sum_probs=64.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN------------------ 701 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~------------------ 701 (808)
..||.+|...+......+...+..+++.+.++.++-..|+.++++....|..|.+++..|.+
T Consensus 352 ~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~ 431 (656)
T PRK06975 352 DQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSAS 431 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 45555665555444444444445566667777777777888888888888888888765532
Q ss_pred ----------------------CCCCCCCCCCHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhh
Q 003591 702 ----------------------LPGAHKKPLSGAEHALKAELDHFEG---VELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 702 ----------------------l~~~~~~~LS~aEk~~~~El~~~~~---~~l~~L~~~ie~lk~r~~~~~ 747 (808)
|.....|.+-.-=++..++|.++.. .+..++--+|+++..++..+-
T Consensus 432 q~L~l~~dv~~A~~~L~~AD~~La~~~~P~l~~lR~Ala~Di~~L~~~~~~D~~gl~l~L~~l~~~vd~Lp 502 (656)
T PRK06975 432 QQLQLTGNVQLALIALQNADARLATSDSPQAVAVRKAIAQDIERLKAAPSADLTGLAIKLDDAIAKIDALP 502 (656)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHhhCc
Confidence 1112223344444445555554443 345667777788877777764
No 330
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.09 E-value=3.2e+02 Score=33.61 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHH-------HHH
Q 003591 666 NKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSS-------IEA 738 (808)
Q Consensus 666 e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~-------ie~ 738 (808)
.+++...+...+|..-|..++.+-..|..++...... +..+=..|.-.+.++.++.. .+.+|+.+ +..
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~----~~~~~k~e~tLke~l~~l~~-~le~lr~qk~eR~~ef~e 128 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSII----GEISDKIEGTLKEQLESLKP-YLEGLRKQKDERRAEFKE 128 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc----cccccccCccHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555545554444442211 11111234466667777664 55555544 444
Q ss_pred HHHHHHHhhcCCCCCCCCccccccC-cccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 739 LRARLRRLTQSPEGSPGNQQRQTLG-KNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 739 lk~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
+..+.+++.+...+.... .....+ .+.+++.-+.+++..|.++.+...+=.+||..+...++.
T Consensus 129 l~~qie~l~~~l~g~~~~-~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~ 192 (660)
T KOG4302|consen 129 LYHQIEKLCEELGGPEDL-PSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKS 192 (660)
T ss_pred HHHHHHHHHHHhcCCccC-CcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554443111 112223 556888889999999999998888888887777666653
No 331
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=63.05 E-value=1.3e+02 Score=37.53 Aligned_cols=13 Identities=15% Similarity=0.366 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhh
Q 003591 713 AEHALKAELDHFE 725 (808)
Q Consensus 713 aEk~~~~El~~~~ 725 (808)
+++....+..++.
T Consensus 411 kd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 411 KDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 332
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=62.84 E-value=98 Score=33.52 Aligned_cols=133 Identities=21% Similarity=0.301 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHhhhhhhhH-------HHHH
Q 003591 663 EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAH--KKPLSGAEHALKAELDHFEGVEL-------DALH 733 (808)
Q Consensus 663 ~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~--~~~LS~aEk~~~~El~~~~~~~l-------~~L~ 733 (808)
.+.+.++.+..........|+.+...=+.-...-+.+|...+.. -+|-+..=+.|.++|+.+.+ -+ ..+.
T Consensus 26 ~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~-~L~~A~~sD~~~~ 104 (296)
T PF13949_consen 26 KLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYRE-YLEQASESDSQLR 104 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHH-HHHHHHhhHHHHH
Confidence 33334444444444445555555555555555555555522221 23444445789999999886 33 2466
Q ss_pred HHHHHHHHHHHHhhcCCCC----CCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 003591 734 SSIEALRARLRRLTQSPEG----SPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESAL 800 (808)
Q Consensus 734 ~~ie~lk~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~ 800 (808)
.+++..+.-++.+...... -+.. ....+.-...++++|+..|.+...+..+=..-++.++..+
T Consensus 105 ~~~~~~~~~l~~L~~~~~~L~~~lp~~----~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 105 SKLESIEENLELLSGPIEELEASLPSS----SPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHS--B-------SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChhhHHhhCCCC----CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555443210 0000 0012222366788888888888777776666655555533
No 333
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.74 E-value=3.2e+02 Score=34.93 Aligned_cols=26 Identities=31% Similarity=0.250 Sum_probs=12.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 777 SLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 777 ~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
....++-+.=.++.++.+.+|+..++
T Consensus 308 ~~~ek~~~~~~~v~~~~~~le~lk~~ 333 (1072)
T KOG0979|consen 308 EKFEKLKEIEDEVEEKKNKLESLKKA 333 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555555555444
No 334
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.63 E-value=15 Score=46.31 Aligned_cols=120 Identities=22% Similarity=0.271 Sum_probs=72.3
Q ss_pred CCceEEEEeC-CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEE-EecC-e
Q 003591 51 APKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLL-IGSD-G 127 (808)
Q Consensus 51 ~~rnll~~~~-~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal-~G~~-~ 127 (808)
...|+|+.-+ +++||+||=++ .. + .|..-...++ -+|.-|.-|..-.++.- .++. .
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn-------~~-------t-----P~~~~~~~~~--~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNK-------PE-------T-----PFTPGSQAPP--SEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCC-------cC-------C-----CCCCCCCCCc--ccceEeccchhhhHHhhccCCCCC
Confidence 4788887654 99999999875 11 1 1211121222 57887777766555444 4444 4
Q ss_pred EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCC---eEEEEeccCCCCCCceEE
Q 003591 128 LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDS---VFRLFNLASDVMQPEQEY 204 (808)
Q Consensus 128 v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~---~ir~ydl~~~~~~p~q~~ 204 (808)
++|-+|-... ++ +.+. +. .....+--+.|||..-+-|+|=+.|+ +|.+||+.. ...|.+++
T Consensus 186 ~~iWDlr~~~------pi----i~ls---~~--~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~-assP~k~~ 249 (1049)
T KOG0307|consen 186 AVIWDLRKKK------PI----IKLS---DT--PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF-ASSPLKIL 249 (1049)
T ss_pred ceeccccCCC------cc----cccc---cC--CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc-cCCchhhh
Confidence 6666775431 11 1111 00 11234667889999988888888775 889999854 55677776
Q ss_pred Eec
Q 003591 205 YLQ 207 (808)
Q Consensus 205 ~l~ 207 (808)
.-+
T Consensus 250 ~~H 252 (1049)
T KOG0307|consen 250 EGH 252 (1049)
T ss_pred ccc
Confidence 433
No 335
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=62.54 E-value=61 Score=32.91 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQ 687 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~ 687 (808)
..+.+..||+..++.|..++ ..|+.++.+.+.+++++.-|+.++++.++
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666665555 66777778888888888888777777654
No 336
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=62.37 E-value=1.1e+02 Score=31.33 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=25.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEER 674 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~ 674 (808)
.||..-++.+...++++.+.+..+...+..+...
T Consensus 6 ~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~ 39 (204)
T PF04740_consen 6 SELHSQAESTNSSLKELKEQLESLQKAINQFISS 39 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566667777777888888888888888877743
No 337
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=62.31 E-value=1.5e+02 Score=32.28 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhcc
Q 003591 784 LVNSENLKKVKLVESALKKQES 805 (808)
Q Consensus 784 ~~i~e~~~k~~~~~~~~~~~~~ 805 (808)
-.|.|+.-||+.+|--|..||+
T Consensus 285 ~qNQEL~ski~ELE~rLq~qek 306 (307)
T PF10481_consen 285 AQNQELRSKINELELRLQGQEK 306 (307)
T ss_pred HHhHHHHHHHHHHHHHHhhccC
Confidence 3466999999999999999986
No 338
>PLN02939 transferase, transferring glycosyl groups
Probab=62.29 E-value=88 Score=39.90 Aligned_cols=59 Identities=32% Similarity=0.354 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 003591 688 QHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQ 748 (808)
Q Consensus 688 ~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~ 748 (808)
+-+-+.+.+++||+ +.......= -.+....+|+..+++ +=-.|+..++.+|+.+..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 254 (977)
T PLN02939 195 HVEILEEQLEKLRNELLIRGATEG-LCVHSLSKELDVLKE-ENMLLKDDIQFLKAELIEVAE 254 (977)
T ss_pred cchhhHHHHHHHhhhhhccccccc-cccccHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHh
Confidence 33456677777776 321111100 033445556666654 333455555555555544443
No 339
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=62.05 E-value=73 Score=38.61 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=71.6
Q ss_pred ceeeeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 105 NFEVSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
...|++|..||+|+||+-++. +++++-+.- .... ++-...| + +.+.--|=.+.|-|.+-. +++=.
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~-~~~~-~e~~fa~----~-------k~HtRIIWdcsW~pde~~-FaTaS 637 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQ-EDIK-DEFRFAC----L-------KAHTRIIWDCSWSPDEKY-FATAS 637 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeee-cccc-hhhhhcc----c-------cccceEEEEcccCcccce-eEEec
Confidence 468999999999999988765 678777762 2122 1111222 1 111223667788888733 88999
Q ss_pred cCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCC-CCCCceEEEEEecCccEEEEc
Q 003591 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD-HLWDRFSVFVLFSDGSIYILC 251 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~-~~w~~~tLyiL~~~GdIYalc 251 (808)
-|-++.+|.+..+.+.-...|...+ ++..+.+.+|-+- +.=...-+-+=+++|.||..-
T Consensus 638 RDK~VkVW~~~~~~d~~i~~~a~~~---------~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 638 RDKKVKVWEEPDLRDKYISRFACLK---------FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred CCceEEEEeccCchhhhhhhhchhc---------cCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 9999999999775322111111111 2333334444431 111223444557899998843
No 340
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=61.97 E-value=1.4e+02 Score=28.42 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 003591 727 VELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 727 ~~l~~L~~~ie~lk~r~~~~~ 747 (808)
+++..|..+|++|.++++.+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777776666654
No 341
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=61.78 E-value=1.3e+02 Score=30.99 Aligned_cols=94 Identities=22% Similarity=0.351 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhh------h
Q 003591 655 DDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEG------V 727 (808)
Q Consensus 655 ~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~------~ 727 (808)
+.=+.+|.+-+.+-+++.+....|.+.++.+...-+.|.+=+.+|+. +. ..-..|-.+|..|..|=+.++. .
T Consensus 63 e~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~-~l~~eL~~ke~~~~~ee~~~~~y~~~eh~ 141 (182)
T PF15035_consen 63 EEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWE-RLRDELEQKEAEWREEEENFNQYLSSEHS 141 (182)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33456666777777777777888999999999999999888888776 33 2334788899999999999885 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 003591 728 ELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
.+-.|+..+-+|+.....+...
T Consensus 142 rll~LWr~v~~lRr~f~elr~~ 163 (182)
T PF15035_consen 142 RLLSLWREVVALRRQFAELRTA 163 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777776665544
No 342
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=61.63 E-value=1.3e+02 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003591 664 AQNKILKVEERQSRLEERIDH 684 (808)
Q Consensus 664 l~e~i~~l~~~~e~L~~Rie~ 684 (808)
+.+++..+.....+|+++++.
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~ 57 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQ 57 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHh
Confidence 334444444333334333333
No 343
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=61.55 E-value=1.9e+02 Score=30.96 Aligned_cols=71 Identities=8% Similarity=0.207 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHH
Q 003591 669 LKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEH---ALKAELDHFEGVELDALHSSIEALRA 741 (808)
Q Consensus 669 ~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk---~~~~El~~~~~~~l~~L~~~ie~lk~ 741 (808)
.....+++.++.++.++-+--+.|-+-++...+-. ....|++.-+| ++++-|+-+.+ ..-.|+++++.++.
T Consensus 174 ~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~-d~t~~~~qi~Kilnah~~sLqwl~d-~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 174 EQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTV-DKTDPIIQIEKILNAHMDSLQWLDD-NSTQLEKKLDKIKK 247 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc-ccCCchHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHh
Confidence 33334567777777776666666666666544422 23345554444 33333333332 33344444444443
No 344
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=61.54 E-value=2.3e+02 Score=30.37 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=89.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLS---EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEH 715 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~---~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk 715 (808)
..|-..++..|...+..++.+.. +.+.+...++.....-+.+|++|...|+.-.+.+..+.. |..... ..-+-
T Consensus 41 l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~---~~~D~ 117 (239)
T PF05276_consen 41 LSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSN---WTFDP 117 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccccH
Confidence 45556666667666666666654 566677777777788889999999999999999988654 553332 33446
Q ss_pred HHHHHHhhhhhh-------h--H----HHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHh
Q 003591 716 ALKAELDHFEGV-------E--L----DALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKL 782 (808)
Q Consensus 716 ~~~~El~~~~~~-------~--l----~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~ 782 (808)
+|.+-|+.-... . . ........++..++..+..+.+... .+++.|.. ........|.++
T Consensus 118 ~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I------~KSrPYfe--~K~~~~~~l~~~ 189 (239)
T PF05276_consen 118 AWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAI------KKSRPYFE--LKAKFNQQLEEQ 189 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhHHHH--HHHHHHHHHHHH
Confidence 676555543320 0 0 1122233444444444443332211 11233432 245567777777
Q ss_pred hhhhHHHHHHHHHH----HHHHhhhc
Q 003591 783 SLVNSENLKKVKLV----ESALKKQE 804 (808)
Q Consensus 783 ~~~i~e~~~k~~~~----~~~~~~~~ 804 (808)
-..+.++.++|..- ..+|+|-|
T Consensus 190 k~~v~~Le~~v~~aK~~Y~~ALrnLE 215 (239)
T PF05276_consen 190 KEKVEELEAKVKQAKSRYSEALRNLE 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777643 34555544
No 345
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.54 E-value=2.5e+02 Score=30.64 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.++.-..+++.-..-++.++++-..++.++..++++.+++-..+...|..++.+-+.+.+|+..
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555555555555555555555444
No 346
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=61.49 E-value=1e+02 Score=37.29 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=52.4
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec
Q 003591 105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
.-.|=+|.+||.++-++|=-+.+ ++..+-.. . + .|.- ...++ ...++|..+.|||. +.+|+.=++
T Consensus 110 gg~IWsiai~p~~~~l~IgcddG-vl~~~s~~--p-~--~I~~-~r~l~-------rq~sRvLslsw~~~-~~~i~~Gs~ 174 (691)
T KOG2048|consen 110 GGAIWSIAINPENTILAIGCDDG-VLYDFSIG--P-D--KITY-KRSLM-------RQKSRVLSLSWNPT-GTKIAGGSI 174 (691)
T ss_pred CcceeEEEeCCccceEEeecCCc-eEEEEecC--C-c--eEEE-Eeecc-------cccceEEEEEecCC-ccEEEeccc
Confidence 45688999999999888865777 33333211 1 1 1211 11111 23569999999995 467899999
Q ss_pred CCeEEEEeccCC
Q 003591 185 DSVFRLFNLASD 196 (808)
Q Consensus 185 D~~ir~ydl~~~ 196 (808)
|+.||+||+...
T Consensus 175 Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 175 DGVIRIWDVKSG 186 (691)
T ss_pred CceEEEEEcCCC
Confidence 999999999874
No 347
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=61.41 E-value=3.4e+02 Score=32.25 Aligned_cols=98 Identities=12% Similarity=0.190 Sum_probs=69.1
Q ss_pred CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEE-ecCeEEEEEeCCCCCC
Q 003591 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-GSDGLCVMYLYGRTCS 139 (808)
Q Consensus 61 ~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~-G~~~v~Vv~LP~~~~~ 139 (808)
|+.+|+||++.+-.. ..|.-+..-.--|..|.-||+++.++-+ +.+++-|=++-.+
T Consensus 211 Dgki~iyDGktge~v--------------------g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~--- 267 (603)
T KOG0318|consen 211 DGKIYIYDGKTGEKV--------------------GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN--- 267 (603)
T ss_pred CccEEEEcCCCccEE--------------------EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---
Confidence 888888888763211 1222123345678899999999877765 5678877776544
Q ss_pred CCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 140 SDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 140 ~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
++ -++++.+.+ -.-..+-++|. ..||+++..+++|-+||.+.
T Consensus 268 ----sl-v~t~~~~~~------v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 268 ----SL-VSTWPMGST------VEDQQVGCLWQ---KDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred ----ce-EEEeecCCc------hhceEEEEEEe---CCeEEEEEcCcEEEEecccC
Confidence 11 466777753 12356888998 89999999999999999976
No 348
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.41 E-value=2.1e+02 Score=29.78 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 648 PQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 648 ~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
..|+.++.+-.++.......+..+.....+|.+=+..+...-++|...+..
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444433333333444444455555555555566655555555555544
No 349
>PRK10869 recombination and repair protein; Provisional
Probab=61.35 E-value=1.7e+02 Score=35.28 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 003591 638 KVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE------RQSRLEERIDHAVQ 687 (808)
Q Consensus 638 ~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~------~~e~L~~Rie~a~~ 687 (808)
....++.++.+.++...++...++..++-.++.|.. ..+.|.+++.++..
T Consensus 164 ~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n 219 (553)
T PRK10869 164 QLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLAN 219 (553)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 444456666667766666666666666666666663 35666666555543
No 350
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=61.26 E-value=35 Score=40.94 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhhhHHHHHH
Q 003591 773 SQLRSLMEKLSLVNSENLKK 792 (808)
Q Consensus 773 ~~l~~~L~~~~~~i~e~~~k 792 (808)
+.+=..| .|..+.+-..+
T Consensus 279 ~~~~~~L--~g~~i~~~~~~ 296 (555)
T TIGR03545 279 KNFAVDL--FGPEIRKYLQK 296 (555)
T ss_pred HHHHHHH--hhHHHHHHHHH
Confidence 4444444 45555554444
No 351
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=61.25 E-value=1.6e+02 Score=28.73 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=28.0
Q ss_pred HHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 003591 693 EQRLQH-LRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRAR 742 (808)
Q Consensus 693 ~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r 742 (808)
.+|+.. |++|.- | | .+||+.|.. .++.|..+|+.|..+
T Consensus 93 d~rV~~aL~rLgv---P--s------~~dv~~L~~-rId~L~~~v~~l~~~ 131 (132)
T PF05597_consen 93 DERVARALNRLGV---P--S------RKDVEALSA-RIDQLTAQVERLANK 131 (132)
T ss_pred HHHHHHHHHhcCC---C--C------HHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 346777 776541 2 2 678889985 999999999998753
No 352
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=61.17 E-value=21 Score=39.02 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=55.8
Q ss_pred eeeeEEEeCCCC-CEEEEEec--------CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCC
Q 003591 106 FEVSRISINRNG-SALLLIGS--------DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSD 176 (808)
Q Consensus 106 f~i~~i~~s~sG-~~Lal~G~--------~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd 176 (808)
-+|..|.-+|.. +.||-+-. ++..|-.||..-+.+...++.|-+ .++ + ..-.+|..|.|||.++
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~-~Ld-t-----eavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA-SLD-T-----EAVGKINCVEWEPNSD 136 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh-cCC-H-----HHhCceeeEEEcCCCC
Confidence 588888888854 44444422 678899999765443444444411 122 1 1223799999999888
Q ss_pred CEEEEEecCCeEEEEeccCCCC
Q 003591 177 THLGILSSDSVFRLFNLASDVM 198 (808)
Q Consensus 177 ~~LvvLtsD~~ir~ydl~~~~~ 198 (808)
.++.+- ||.|-+|++..+.+
T Consensus 137 klasm~--dn~i~l~~l~ess~ 156 (370)
T KOG1007|consen 137 KLASMD--DNNIVLWSLDESSK 156 (370)
T ss_pred eeEEec--cCceEEEEcccCcc
Confidence 776554 89999999988655
No 353
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.10 E-value=1.5e+02 Score=34.61 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhh---------hHHHHHHHHHHH
Q 003591 670 KVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGV---------ELDALHSSIEAL 739 (808)
Q Consensus 670 ~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~---------~l~~L~~~ie~l 739 (808)
.+....+.+..++..++++.+.+....+.+++ +.......+...++.+..+++.++.. .+..+...+.++
T Consensus 169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 248 (457)
T TIGR01000 169 AAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQL 248 (457)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555554444 11111114444556677777666542 445677788888
Q ss_pred HHHHHHhhcCCCC
Q 003591 740 RARLRRLTQSPEG 752 (808)
Q Consensus 740 k~r~~~~~~~~~~ 752 (808)
+..+..+..+...
T Consensus 249 ~~~i~~~~~~~~~ 261 (457)
T TIGR01000 249 QKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877766543
No 354
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=60.80 E-value=2.7e+02 Score=30.88 Aligned_cols=155 Identities=14% Similarity=0.156 Sum_probs=85.6
Q ss_pred CceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeec-CCCcceeeeEEEeCCCCCEEEEEecC-eEE
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRA-DVKLNFEVSRISINRNGSALLLIGSD-GLC 129 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~-~~~l~f~i~~i~~s~sG~~Lal~G~~-~v~ 129 (808)
.-|-|...-.++.|+-...+.+++.-++|..+ .+-+|.. .+|+ +...|+|-+.|+.... .|-
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~----------cqg~l~~~~~pi------~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK----------CQGLLNLSGRPI------AAFDPEGLIFALANGSELIK 165 (311)
T ss_pred eEEEEEecCCCCeEEecccCCeEEeeEecCCC----------CceEEecCCCcc------eeECCCCcEEEEecCCCeEE
Confidence 33444443455777776666777776777332 2333332 2333 4578999999998665 444
Q ss_pred EEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccC
Q 003591 130 VMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPV 209 (808)
Q Consensus 130 Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~ 209 (808)
+-.+-.. +.++. .++.+.. +...+..++.|-|. +.+|++=|.++.+.+.|.-.+ + ..++|...+
T Consensus 166 LyD~Rs~----dkgPF--~tf~i~~------~~~~ew~~l~FS~d-GK~iLlsT~~s~~~~lDAf~G-~-~~~tfs~~~- 229 (311)
T KOG1446|consen 166 LYDLRSF----DKGPF--TTFSITD------NDEAEWTDLEFSPD-GKSILLSTNASFIYLLDAFDG-T-VKSTFSGYP- 229 (311)
T ss_pred EEEeccc----CCCCc--eeEccCC------CCccceeeeEEcCC-CCEEEEEeCCCcEEEEEccCC-c-EeeeEeecc-
Confidence 4444322 22222 2333331 22334555555444 467778888899999998663 3 555666543
Q ss_pred CCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 210 EPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 210 ~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
+. +....++||.|++ .=++.-..||-|++
T Consensus 230 ------~~-~~~~~~a~ftPds----~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 230 ------NA-GNLPLSATFTPDS----KFVLSGSDDGTIHV 258 (311)
T ss_pred ------CC-CCcceeEEECCCC----cEEEEecCCCcEEE
Confidence 11 2234789998852 22223334677766
No 355
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.68 E-value=1.7e+02 Score=31.83 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC
Q 003591 728 ELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
++..|+..|..+|.-+++.++.
T Consensus 110 qie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 110 QIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777775544
No 356
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.39 E-value=3.1e+02 Score=34.09 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=27.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKIL--KVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~--~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
.+=|..|+..++.+++..-.+|++-+++-+ ++...++.+-+++.+++.+..++..+...|..
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQ 332 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444321 11122333344555544444444444444433
No 357
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=60.23 E-value=3.2e+02 Score=31.52 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003591 676 SRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 676 e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.+|++||+.+...-+-|.+.++.
T Consensus 204 N~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777888877777777777654
No 358
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=60.21 E-value=1.1e+02 Score=33.98 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 649 QLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 649 ~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
+++.|+-+-+.++.+++.+.+.+....+.|...+..+++.|..|..-+..
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~e 280 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQE 280 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555555444333
No 359
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.16 E-value=25 Score=37.86 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQ 687 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~ 687 (808)
++....|+..|.+|+++|..++..++.++++++....+|=||+.=++.
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888999999999999999999999999999999888666655443
No 360
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=60.06 E-value=67 Score=40.05 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=69.6
Q ss_pred CceEEEEeC-CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecC-CCccee----eeEEEeCCCCCEEEEEec
Q 003591 52 PKNLVAWDG-ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRAD-VKLNFE----VSRISINRNGSALLLIGS 125 (808)
Q Consensus 52 ~rnll~~~~-~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~-~~l~f~----i~~i~~s~sG~~Lal~G~ 125 (808)
.+||||+.. +|.+++|+=.++.+. ++|.-- +..+|+ +.++.-+|.|..+|+++.
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~--------------------~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILS--------------------KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhh--------------------hhcccCCccccccccceeeeeeecCCCCeEEeecc
Confidence 567776655 889999987642111 111100 011122 448889999777777777
Q ss_pred CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 126 DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 126 ~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
.+-++|.=+..|.. .+.+.+. ..++.+.-+.|-|. +..|..-|-||.|-+||+..
T Consensus 209 d~~Vkvy~r~~we~---------~f~Lr~~-----~~ss~~~~~~wsPn-G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWEL---------QFKLRDK-----LSSSKFSDLQWSPN-GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCcee---------heeeccc-----ccccceEEEEEcCC-CcEEeeeccCCcEEEEeccc
Confidence 76666665555643 1222221 12334888899999 88999999999999999975
No 361
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=60.00 E-value=1.3e+02 Score=35.24 Aligned_cols=106 Identities=12% Similarity=0.217 Sum_probs=65.3
Q ss_pred CceEEEEeCC-CcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCe-EEEEEeCCCCC
Q 003591 61 ASRLYYWDQN-AQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDG-LCVMYLYGRTC 138 (808)
Q Consensus 61 ~~~l~~w~~~-~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~-v~Vv~LP~~~~ 138 (808)
...+|...+. .+|.-.-|+|.. -.-|.|+ -+ .-.|.-+-.|.+..|+|-+...+ |.|.-+-..
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~k----------l~hr~lk--dh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~-- 153 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAK----------LIHRFLK--DH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK-- 153 (673)
T ss_pred hcceeeeccCcCceeeehhhHHH----------HHhhhcc--CC-cceeEEEEecCCcceeEEeccCCcEEEEecccC--
Confidence 4445555543 355555555522 2334555 23 25788899999999999875543 333222211
Q ss_pred CCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 139 SSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 139 ~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
. +.-+|.++ ++-.|+-+.+||.+-.+|++...|+++.+||++-
T Consensus 154 ~------~tt~f~~~--------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 154 Q------KTTTFTID--------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred c------cccceecC--------CCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 1 01112222 2334678999999999999999999999999975
No 362
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.98 E-value=84 Score=26.55 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 662 SEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 662 ~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
..+.+++.+++...-.+..|+.++..+-..|...++.|++
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777777776654
No 363
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=59.84 E-value=21 Score=43.27 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=51.9
Q ss_pred CceEeecCCCcceeeeEEEeCCCCCEEEEEecCeE-EEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEe
Q 003591 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSDGL-CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (808)
Q Consensus 94 ~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v-~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WH 172 (808)
..|+++- . .-.|..|.+||.|+|||.-++.++ .|=+|+...-. . .++ .....|-.+.|
T Consensus 569 ~VRiF~G--H-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-------------~--~l~--~Ht~ti~SlsF- 627 (707)
T KOG0263|consen 569 SVRIFTG--H-KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV-------------K--QLK--GHTGTIYSLSF- 627 (707)
T ss_pred EEEEecC--C-CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-------------h--hhh--cccCceeEEEE-
Confidence 3456653 3 357999999999999999988654 44466642100 0 011 01223455555
Q ss_pred cCC--CCEEEEEecCCeEEEEeccC
Q 003591 173 PYS--DTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 173 P~s--d~~LvvLtsD~~ir~ydl~~ 195 (808)
| +.+||+=-.||+||+||+..
T Consensus 628 --S~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 628 --SRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred --ecCCCEEEecCCCCeEEEEEchh
Confidence 4 57889999999999999976
No 364
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=59.61 E-value=67 Score=39.08 Aligned_cols=100 Identities=19% Similarity=0.338 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHH
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAE 714 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aE 714 (808)
++|.-+.++..|...|..++++--.+|..++++.+.=.+..++|-+-.+ .-.|..+.+|+..|.+.. -|-..+
T Consensus 153 ~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvd--ErlqlhlkermaAle~kn-----~L~~e~ 225 (916)
T KOG0249|consen 153 KAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVD--ERLQLHLKERMAALEDKN-----RLEQEL 225 (916)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccH--HHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 4555556666666666666666666666666666555544444332222 123334444444444322 133455
Q ss_pred HHHHHHHhhhhh------hhHHHHHHHHHHHHH
Q 003591 715 HALKAELDHFEG------VELDALHSSIEALRA 741 (808)
Q Consensus 715 k~~~~El~~~~~------~~l~~L~~~ie~lk~ 741 (808)
..+++-|..+.- .+...|...+++|++
T Consensus 226 ~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 226 ESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 556665555542 133466666777774
No 365
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.34 E-value=73 Score=37.54 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCceEEEEeC---CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEE-e--
Q 003591 51 APKNLVAWDG---ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLI-G-- 124 (808)
Q Consensus 51 ~~rnll~~~~---~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~-G-- 124 (808)
-.+||||+=+ |..|.+||-+.. ..++.+. . .-.|..|+-|+..+=++.. |
T Consensus 354 ~q~~lLAsGGGs~D~~i~fwn~~~g--------------------~~i~~vd--t--gsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 354 WQSGLLATGGGSADRCIKFWNTNTG--------------------ARIDSVD--T--GSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CccCceEEcCCCcccEEEEEEcCCC--------------------cEecccc--c--CCceeeEEEcCCCCEEEEecCCC
Confidence 3677777754 456666666531 1223222 2 2468899999988655553 3
Q ss_pred cCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCC
Q 003591 125 SDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASD 196 (808)
Q Consensus 125 ~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~ 196 (808)
...|.|-..|.. .. ... ...+..+|....|-|. +..+|+-..|.+||||++...
T Consensus 410 ~n~i~lw~~ps~-~~---------~~~-------l~gH~~RVl~la~SPd-g~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSM-KL---------VAE-------LLGHTSRVLYLALSPD-GETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEecccc-ce---------eee-------ecCCcceeEEEEECCC-CCEEEEecccCcEEeccccCC
Confidence 345565555542 11 011 1234568999999998 678999999999999999663
No 366
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.27 E-value=1.1e+02 Score=29.44 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003591 667 KILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNL 702 (808)
Q Consensus 667 ~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l 702 (808)
.+..++..-+.|..++..+.....++..-.+.|..+
T Consensus 14 ~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l 49 (140)
T PRK03947 14 QLQALQAQIEALQQQLEELQASINELDTAKETLEEL 49 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444454444444443
No 367
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.86 E-value=65 Score=40.34 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 003591 620 TLHQYFNLFQ 629 (808)
Q Consensus 620 ~L~~a~~~l~ 629 (808)
.+.+|-+++.
T Consensus 498 ii~~A~~~~~ 507 (771)
T TIGR01069 498 IIEQAKTFYG 507 (771)
T ss_pred HHHHHHHHHH
Confidence 4556666554
No 368
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.78 E-value=1.3e+02 Score=26.66 Aligned_cols=55 Identities=11% Similarity=0.379 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 629 QENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDH 684 (808)
Q Consensus 629 ~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~ 684 (808)
+.+|-.....+.. ...+.+.+...+..|+.+++.+++++-.+.....++..+||+
T Consensus 10 r~Ef~~~~~e~~~-~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 10 RQEFENLSQEANS-YKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333 555677777788999999999999999999988888888875
No 369
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=58.78 E-value=2.9e+02 Score=30.64 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 621 LHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLS---EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQ 697 (808)
Q Consensus 621 L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~---~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~ 697 (808)
|-.|-+.|++..+.+- .+++-|-..+-.|+.+-. +++-+--.++..+.+-+++++++..--..-.+.+.
T Consensus 36 Le~ar~~Fretqv~~t--------~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVs 107 (426)
T KOG2008|consen 36 LEDARQKFRETQVEAT--------VKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQVS 107 (426)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566664443322 223333334444443332 34444445555556666777766655444444444
Q ss_pred HHhc-CCCCCCCCCCHHHHHHHHHHhh
Q 003591 698 HLRN-LPGAHKKPLSGAEHALKAELDH 723 (808)
Q Consensus 698 ~L~~-l~~~~~~~LS~aEk~~~~El~~ 723 (808)
-+.+ |..... .+.+++|.+-|+.
T Consensus 108 l~~~sL~~~~~---~~~~~~~~evlnh 131 (426)
T KOG2008|consen 108 LAEQSLLEDDK---RQFDSAWQEVLNH 131 (426)
T ss_pred HHHHHhhcchh---hhhHHHHHHHHHH
Confidence 4333 221111 2467777766654
No 370
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=58.74 E-value=2.5e+02 Score=34.96 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=71.1
Q ss_pred CceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEE
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVM 131 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv 131 (808)
.|.+-+.+-+|+|++|.+... . .+ +..+++|.=+. .+|..+..|++|.||.--|..+|-|+
T Consensus 217 ~~~~Aa~d~dGrI~vw~d~~~---------~-~~------~~t~t~lHWH~---~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 217 ERYLAAGDSDGRILVWRDFGS---------S-DD------SETCTLLHWHH---DEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred cceEEEeccCCcEEEEecccc---------c-cc------cccceEEEecc---cccceeEEecCCceEeecccceEEEE
Confidence 455555555777777777541 1 11 34567777442 47999999999999988888876664
Q ss_pred EeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 132 YLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 132 ~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
===+ .++ . + |..+-+++|..+.|-|.++.+.+++- ||.|.+.....
T Consensus 278 Wq~~-T~~---k-----------q--fLPRLgs~I~~i~vS~ds~~~sl~~~-DNqI~li~~~d 323 (792)
T KOG1963|consen 278 WQLE-TGK---K-----------Q--FLPRLGSPILHIVVSPDSDLYSLVLE-DNQIHLIKASD 323 (792)
T ss_pred Eeec-CCC---c-----------c--cccccCCeeEEEEEcCCCCeEEEEec-CceEEEEeccc
Confidence 1101 011 0 1 23455678999999999988877765 89999988743
No 371
>PRK11519 tyrosine kinase; Provisional
Probab=58.59 E-value=4.5e+02 Score=32.70 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 621 LHQYFNLFQENYVEYAHKVHFE-LKHHAPQLKQIIDDQHARLSEAQNKILKVEE 673 (808)
Q Consensus 621 L~~a~~~l~e~~~~~~~~v~~e-l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~ 673 (808)
-.+..+.+-+.|+...-..+.+ ..+-.+-|..++.+...+|++.+.++++-+.
T Consensus 242 Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 242 IRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666665444333 2333455666666666666666666665554
No 372
>PRK12705 hypothetical protein; Provisional
Probab=58.48 E-value=2.7e+02 Score=33.22 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 003591 678 LEERIDHAVQQHNI 691 (808)
Q Consensus 678 L~~Rie~a~~~Q~~ 691 (808)
|+.|.+.+.++.+.
T Consensus 93 l~~~~~~l~~~~~~ 106 (508)
T PRK12705 93 LDARAEKLDNLENQ 106 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 373
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=58.15 E-value=3.5e+02 Score=35.69 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=19.9
Q ss_pred CcccCcHHHHHHHHHHHHHhhhhhHHHHHHH
Q 003591 763 GKNYVQDAQISQLRSLMEKLSLVNSENLKKV 793 (808)
Q Consensus 763 ~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~ 793 (808)
++.-++++|++.++..|++....-.++..++
T Consensus 964 ~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l 994 (1294)
T KOG0962|consen 964 GFDDLRIAQLSESEEHLEERDNEVNEIKQKI 994 (1294)
T ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888887777766666555555444
No 374
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=57.88 E-value=1.7e+02 Score=29.64 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHH
Q 003591 728 ELDALHSSIEALRAR 742 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r 742 (808)
++..|+..||.+|-.
T Consensus 139 ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 139 EIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556677777776654
No 375
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=57.84 E-value=1.9e+02 Score=28.15 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
.|.++++....+-.....+.++ +...+..+-.++.++.++.....+.+++|.+-. ..+.++..--+++..-++.|
T Consensus 39 HL~~cA~~Va~~Q~~L~~riKe-vd~~~~~l~~~~~erqk~~~k~ae~L~kv~els----~~L~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 39 HLNQCAEAVAFDQNALAKRIKE-VDQEIAKLLQQMVERQKRFAKFAEQLEKVNELS----QQLSRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3555555554333333333343 677777777777777788888888888777644 44455555666666666666
Q ss_pred hc
Q 003591 700 RN 701 (808)
Q Consensus 700 ~~ 701 (808)
.+
T Consensus 114 N~ 115 (131)
T PF10158_consen 114 NE 115 (131)
T ss_pred Hh
Confidence 66
No 376
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=57.56 E-value=2.3e+02 Score=31.02 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 003591 665 QNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARL 743 (808)
Q Consensus 665 ~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~ 743 (808)
.++++.+...-..|...+..++++-+...+.+.. ..--...+.+.-...=+....+++... .+++.+++++++..+.+
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQ-AELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHH
Confidence 4444444444444555555544444444433333 111111222233333344455555554 36666666655555444
Q ss_pred H
Q 003591 744 R 744 (808)
Q Consensus 744 ~ 744 (808)
+
T Consensus 213 ~ 213 (301)
T PF14362_consen 213 D 213 (301)
T ss_pred H
Confidence 3
No 377
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.40 E-value=2.2e+02 Score=28.66 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHH
Q 003591 713 AEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKK 792 (808)
Q Consensus 713 aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k 792 (808)
.|-.|..|-+.+.. ++..|+...++|..+++.+..+.. . -.++..+++.-++.++.+-.++.++
T Consensus 83 ~Ed~~~~e~k~L~~-~v~~Le~e~r~L~~~~~~~~~q~~--------------r-lee~e~~l~~e~~~l~er~~e~l~~ 146 (158)
T PF09744_consen 83 LEDQWRQERKDLQS-QVEQLEEENRQLELKLKNLSDQSS--------------R-LEEREAELKKEYNRLHERERELLRK 146 (158)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhcc--------------c-cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777666653 666666666666655554444321 1 2466778888888888888888887
Q ss_pred HHHH
Q 003591 793 VKLV 796 (808)
Q Consensus 793 ~~~~ 796 (808)
.+.+
T Consensus 147 ~~e~ 150 (158)
T PF09744_consen 147 LKEH 150 (158)
T ss_pred HHHH
Confidence 6654
No 378
>PF13166 AAA_13: AAA domain
Probab=57.37 E-value=4.5e+02 Score=32.31 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 773 SQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 773 ~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
..++..+.+....+..+.++++.++..+++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 456 (712)
T PF13166_consen 427 NSLEKKLKKAKEEIKKIEKEIKELEAQLKN 456 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555666666666666554
No 379
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.31 E-value=1.9e+02 Score=32.11 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=71.9
Q ss_pred eeEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEE-EEecceeeeccCCccceeEEEE-ecCCCCEEEEEec
Q 003591 108 VSRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRT-VSVGSQIYFSSSNVIRTLQVSW-HPYSDTHLGILSS 184 (808)
Q Consensus 108 i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t-~~v~~~~~~~~~~~~~I~qv~W-HP~sd~~LvvLts 184 (808)
|+.+..+..|+.+|-..+ .+|.|-++-..++. -.|.+ +. -++..|.+|.| ||.-+..+.+-.-
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~-----W~~Ts~Wr---------ah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT-----WSCTSSWR---------AHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCc-----eEEeeeEE---------ecCCcEEEEEecCccccceEEEEec
Confidence 888999999999998865 57888887433232 22321 11 13456999999 5666999999999
Q ss_pred CCeEEEEeccCCCCC-CceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccE
Q 003591 185 DSVFRLFNLASDVMQ-PEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSI 247 (808)
Q Consensus 185 D~~ir~ydl~~~~~~-p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdI 247 (808)
|.++++|+=..+..+ +....... ....-+.-.+.+.+|+|.+ -++-|-.+..||-+
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~-----ttl~DsrssV~DV~FaP~h--lGLklA~~~aDG~l 138 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRR-----TTLVDSRSSVTDVKFAPKH--LGLKLAAASADGIL 138 (361)
T ss_pred CCceeeeeecccccccccceeEEE-----EEeecCCcceeEEEecchh--cceEEEEeccCcEE
Confidence 999999996532221 11111110 0001011257899999943 12333344456644
No 380
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.05 E-value=39 Score=31.50 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=21.5
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 716 ALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 716 ~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
+..-+|..+++ +++.+..+++.+..+++.+.++
T Consensus 69 ~L~l~l~el~G-~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 69 DLQLELAELRG-ELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556665 7777777777777777666654
No 381
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=57.05 E-value=2.8e+02 Score=34.34 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 628 FQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQS 676 (808)
Q Consensus 628 l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e 676 (808)
.|--...+.|+-+-.+.+++-.|..-.++-.+-+..+++...++...+.
T Consensus 823 ~Rg~L~rkr~~~ri~~~~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~ 871 (1259)
T KOG0163|consen 823 ARGYLARKRHRPRIAGIRKINALLKNSLKTIEILSRLKEGREEIISGAN 871 (1259)
T ss_pred HHHHHHHhhhchHHHHHHHHHHHHHhhHHHHHHHHHHhcchHHHHhhhh
Confidence 3433444555566667777766666555555555555555555544333
No 382
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.91 E-value=3.2e+02 Score=30.57 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhh
Q 003591 661 LSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEG 726 (808)
Q Consensus 661 L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~ 726 (808)
|.+.+++.+++...-+.|..|+.+++.--+-|.+.+.+.+- ......+.-.+.--+++.+|+.+..
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~ 140 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLRE 140 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHH
Confidence 35677777777777788888888888888888888877554 2223333333566677888877764
No 383
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=56.86 E-value=25 Score=37.89 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=55.8
Q ss_pred eeeeEEEeCCCCCEEEEEe-cCeEEEEEeCCC-CCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEe
Q 003591 106 FEVSRISINRNGSALLLIG-SDGLCVMYLYGR-TCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILS 183 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G-~~~v~Vv~LP~~-~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLt 183 (808)
-.|+.|.-|-+|+.||--. .+++.|.-+-+- ..+ + . ........|.|+.|||-...-+++-.
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~----------~-----~~~gh~~svdql~w~~~~~d~~atas 84 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-E----------L-----VYRGHTDSVDQLCWDPKHPDLFATAS 84 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhh-h----------h-----cccCCCcchhhheeCCCCCcceEEec
Confidence 4688999999999998643 345555555321 111 0 0 11234456999999999999999999
Q ss_pred cCCeEEEEeccCCCCCCceEE
Q 003591 184 SDSVFRLFNLASDVMQPEQEY 204 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~p~q~~ 204 (808)
.|-+||+||+.. .+|.+.+
T Consensus 85 ~dk~ir~wd~r~--~k~~~~i 103 (313)
T KOG1407|consen 85 GDKTIRIWDIRS--GKCTARI 103 (313)
T ss_pred CCceEEEEEecc--CcEEEEe
Confidence 999999999965 3344444
No 384
>PRK12705 hypothetical protein; Provisional
Probab=56.85 E-value=4.1e+02 Score=31.73 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 770 AQISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
+..++|-+.++ .+...|..+.++.+|...+.
T Consensus 142 eak~~l~~~~~--~~~~~e~~~~i~~~e~~~~~ 172 (508)
T PRK12705 142 QARKLLLKLLD--AELEEEKAQRVKKIEEEADL 172 (508)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33455555553 34455666666666665553
No 385
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=56.74 E-value=35 Score=30.66 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=45.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 003591 718 KAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVE 797 (808)
Q Consensus 718 ~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~ 797 (808)
.+|++.+++ .+.....++|++..|+++ . .+++++.+.+..-++.+..+...+.++++.+.
T Consensus 4 ~~eId~lEe-kl~~cr~~le~ve~rL~~-------~------------eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 4 AKEIDGLEE-KLAQCRRRLEAVESRLRR-------R------------ELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHcc-------c------------CCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 456666663 666666666666666543 1 47888899999989888888889999888887
Q ss_pred H
Q 003591 798 S 798 (808)
Q Consensus 798 ~ 798 (808)
.
T Consensus 64 k 64 (85)
T PF15188_consen 64 K 64 (85)
T ss_pred H
Confidence 5
No 386
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.52 E-value=68 Score=35.95 Aligned_cols=52 Identities=25% Similarity=0.343 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVE 672 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~ 672 (808)
-|.+..+-+.|.|-.+..+. +|+...-+.-...+.+|.+++.++++.+++..
T Consensus 8 eL~~efq~Lqethr~Y~qKl-eel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKL-EELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555544444444333 33555555566677788888888888888874
No 387
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=56.48 E-value=98 Score=27.99 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.1
Q ss_pred HHHHHH
Q 003591 690 NILEQR 695 (808)
Q Consensus 690 ~~L~~R 695 (808)
+++..|
T Consensus 70 ~Evs~r 75 (89)
T PF13747_consen 70 REVSRR 75 (89)
T ss_pred HHHHHH
Confidence 333333
No 388
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=56.10 E-value=4.3e+02 Score=31.72 Aligned_cols=43 Identities=23% Similarity=0.114 Sum_probs=28.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 003591 703 PGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRL 746 (808)
Q Consensus 703 ~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~ 746 (808)
.+-.+..||++|.+-..|+=-+.. ++++...-+|.+-...++.
T Consensus 387 ~~ls~~~Lse~es~r~~~iid~a~-~lE~IgDiie~l~~~~~kk 429 (533)
T COG1283 387 ARLSKEGLSEEESRRWAEIIDAAI-NLEHIGDIIERLLELADKK 429 (533)
T ss_pred HHhccccCCHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 345678999999988887776663 6666555555544444443
No 389
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.07 E-value=1.5e+02 Score=37.99 Aligned_cols=160 Identities=13% Similarity=0.193 Sum_probs=88.1
Q ss_pred CceEEEEeCCceEEEEeCCCcEE-EEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEec----C
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCL-HRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGS----D 126 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l-~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~----~ 126 (808)
.+--++|+||+.+|+.+.-+..- ....+|.-+-+ =.+...+-|++.==..|.=-|+|+++|-.-. +
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re---------G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE---------GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC---------ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 66679999999999988741000 01123322211 1133333445444457788999999998754 3
Q ss_pred eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEe
Q 003591 127 GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYL 206 (808)
Q Consensus 127 ~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l 206 (808)
.|+..|=.+ ++-.-|.+. + ......|....|.+.|+- |.|.+.| .|.+|-.++--=-..|.+.+
T Consensus 282 ~VvFfErNG---------LrhgeF~l~---~--~~~~~~v~~l~Wn~ds~i-LAv~~~~-~vqLWt~~NYHWYLKqei~~ 345 (928)
T PF04762_consen 282 DVVFFERNG---------LRHGEFTLR---F--DPEEEKVIELAWNSDSEI-LAVWLED-RVQLWTRSNYHWYLKQEIRF 345 (928)
T ss_pred EEEEEecCC---------cEeeeEecC---C--CCCCceeeEEEECCCCCE-EEEEecC-CceEEEeeCCEEEEEEEEEc
Confidence 333333222 222224442 1 124557899999887753 4444444 49999987621112233322
Q ss_pred ccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEE
Q 003591 207 QPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 207 ~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYa 249 (808)
.. +.....+.|-+. .+++|++++.+|.++.
T Consensus 346 ~~----------~~~~~~~~Wdpe---~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 346 SS----------SESVNFVKWDPE---KPLRLHVLTSNGQYEI 375 (928)
T ss_pred cC----------CCCCCceEECCC---CCCEEEEEecCCcEEE
Confidence 11 111222666653 6789999999888854
No 390
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=56.02 E-value=1.4e+02 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 003591 715 HALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEG 752 (808)
Q Consensus 715 k~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~ 752 (808)
+.-.+|...++. +-.....+|++++.+++.++.+...
T Consensus 150 ~q~r~ea~aL~~-e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 150 QQARQEAQALEA-ERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444556666663 5666677777777777776666543
No 391
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=55.89 E-value=59 Score=38.83 Aligned_cols=69 Identities=25% Similarity=0.283 Sum_probs=48.3
Q ss_pred eeeeEEEeCCCCCEEEEEecCe-EEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec
Q 003591 106 FEVSRISINRNGSALLLIGSDG-LCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~~~-v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
--|+.|.+.|+|.+||-=|..+ |.|-++-.. --.+++++++ .|.+|.|.|+++.||+....
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--------Rcvr~~~~d~----------~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATG--------RCVRTVQFDS----------EIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecc--------eEEEEEeecc----------eeEEEEecCCCCceeEEEEe
Confidence 3578888899888888766654 556565321 1145666653 59999999999998887777
Q ss_pred CCeEEEEe
Q 003591 185 DSVFRLFN 192 (808)
Q Consensus 185 D~~ir~yd 192 (808)
++++-+-|
T Consensus 463 ~~~~~ivn 470 (733)
T KOG0650|consen 463 GECVLIVN 470 (733)
T ss_pred cCceEEeC
Confidence 77754444
No 392
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.73 E-value=80 Score=38.59 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003591 659 ARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEA 738 (808)
Q Consensus 659 ~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~ 738 (808)
.++..+++..+....+-..+.-||-+.+-.-.+|.+|++.|..+.. + .+..-++..+..+|..
T Consensus 616 ~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~----------------~-~fa~ID~~Sa~rqIae 678 (1104)
T COG4913 616 AKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQA----------------L-NFASIDLPSAQRQIAE 678 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh----------------c-chhhcchhhHHHHHHH
Q ss_pred HHHHHHHhhcCCCCCCCCccccccC-cccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcc
Q 003591 739 LRARLRRLTQSPEGSPGNQQRQTLG-KNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQES 805 (808)
Q Consensus 739 lk~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~~ 805 (808)
+++++++++...... .+.. ......+|.+.+...-+.+...-.+.+++.|.-+..++.-++
T Consensus 679 l~~~lE~L~~t~~~~------~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~s 740 (1104)
T COG4913 679 LQARLERLTHTQSDI------AIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHS 740 (1104)
T ss_pred HHHHHHHhcCChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 393
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=55.23 E-value=3.1e+02 Score=32.02 Aligned_cols=128 Identities=9% Similarity=0.149 Sum_probs=70.5
Q ss_pred eeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC-CCEEEEEecCC
Q 003591 108 VSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSDS 186 (808)
Q Consensus 108 i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s-d~~LvvLtsD~ 186 (808)
++.-.+|+.|.|+|+.|..+- |-.|..-++. + ++ .|. ....|..+.|- | +.+|++...++
T Consensus 306 ~e~FeVShd~~fia~~G~~G~-I~lLhakT~e-----l------i~--s~K---ieG~v~~~~fs--Sdsk~l~~~~~~G 366 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGH-IHLLHAKTKE-----L------IT--SFK---IEGVVSDFTFS--SDSKELLASGGTG 366 (514)
T ss_pred hheeEecCCCCeEEEcccCce-EEeehhhhhh-----h------hh--eee---eccEEeeEEEe--cCCcEEEEEcCCc
Confidence 556778999999999998762 3333322111 0 00 111 12356677777 5 37888888999
Q ss_pred eEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEec-CccEEEEcc---cCCCCCCcCh
Q 003591 187 VFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYILCP---VVPFGSVYKW 262 (808)
Q Consensus 187 ~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~-~GdIYalcP---~lP~~~~~~~ 262 (808)
.|-+||+... .....|. +-.+..-.++|-+..+. |++++ +.-|..+|- ++-...-=|-
T Consensus 367 eV~v~nl~~~--~~~~rf~----------D~G~v~gts~~~S~ng~------ylA~GS~~GiVNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 367 EVYVWNLRQN--SCLHRFV----------DDGSVHGTSLCISLNGS------YLATGSDSGIVNIYDGNSCFASTNPKPI 428 (514)
T ss_pred eEEEEecCCc--ceEEEEe----------ecCccceeeeeecCCCc------eEEeccCcceEEEeccchhhccCCCCch
Confidence 9999999763 1111111 11123445777665332 55544 444444443 3333333344
Q ss_pred hHHHHHHhhh
Q 003591 263 ESILEIYNDA 272 (808)
Q Consensus 263 ~~l~~L~~~~ 272 (808)
..++.|...+
T Consensus 429 k~~dNLtt~I 438 (514)
T KOG2055|consen 429 KTVDNLTTAI 438 (514)
T ss_pred hhhhhhheee
Confidence 6666666554
No 394
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=55.23 E-value=1.5e+02 Score=26.32 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003591 678 LEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 678 L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
+.+|+..+.++-..|.+|+.+|
T Consensus 69 ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 69 IKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444
No 395
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.21 E-value=2.8e+02 Score=31.53 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=47.3
Q ss_pred cceeeeEEEeCCCCCEEEEE--ecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEE
Q 003591 104 LNFEVSRISINRNGSALLLI--GSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGI 181 (808)
Q Consensus 104 l~f~i~~i~~s~sG~~Lal~--G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~Lvv 181 (808)
+.-..+.+.+|++|+|+++. .+.+|.|++.-.. . ..+.++.+. +.......++..+.--|....-++.
T Consensus 76 ~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e-------~v~~I~~~~--~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-E-------PVKTIPTGG--MPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----------EEEEEE--E--E-TTTS---EEEEEE-SSSSEEEEE
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCceeEeccccc-c-------ceeeccccc--ccccccCCCceeEEecCCCCEEEEE
Confidence 45678999999999999886 4688888876332 1 134455542 1111245567777666666667777
Q ss_pred EecCCeEEEEeccC
Q 003591 182 LSSDSVFRLFNLAS 195 (808)
Q Consensus 182 LtsD~~ir~ydl~~ 195 (808)
|..-+.|-+.|.+.
T Consensus 146 lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 146 LKDTGEIWVVDYSD 159 (369)
T ss_dssp ETTTTEEEEEETTT
T ss_pred EccCCeEEEEEecc
Confidence 77777766666544
No 396
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=55.15 E-value=2.7e+02 Score=29.56 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhhcCC
Q 003591 682 IDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEHALKAELDHFEG---VELDALHSSIEALRARLRRLTQSP 750 (808)
Q Consensus 682 ie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~~~---~~l~~L~~~ie~lk~r~~~~~~~~ 750 (808)
+-++.++|+.|..+++. +..++..--.||=.+=..|.+.+..+.. .+-+.....|+.....+.++..++
T Consensus 70 L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs 142 (223)
T cd07605 70 LKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKS 142 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555 2222222333333333344444443332 122233334444444444444443
No 397
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=55.15 E-value=2.7e+02 Score=32.40 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhc
Q 003591 767 VQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQE 804 (808)
Q Consensus 767 ~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~ 804 (808)
++.+.+..||...-.+--.|.|+..+.++++|++..|-
T Consensus 320 ~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~ 357 (554)
T KOG4677|consen 320 FSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQI 357 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHH
Confidence 66677788888888888889999999999999998764
No 398
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=55.07 E-value=3.2e+02 Score=29.96 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=53.5
Q ss_pred eeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecC
Q 003591 106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD 185 (808)
=.||.+.-||.|+|||.. +..-.++.--.. ++...|-..- ..+...|+.|.|-+ ++.+|.+-+-|
T Consensus 62 rsVRsvAwsp~g~~La~a-SFD~t~~Iw~k~-----~~efecv~~l--------EGHEnEVK~Vaws~-sG~~LATCSRD 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASA-SFDATVVIWKKE-----DGEFECVATL--------EGHENEVKCVAWSA-SGNYLATCSRD 126 (312)
T ss_pred heeeeeeecCCCcEEEEe-eccceEEEeecC-----CCceeEEeee--------eccccceeEEEEcC-CCCEEEEeeCC
Confidence 368999999999988864 444444433232 2345572221 23456899999976 46899999999
Q ss_pred CeEEEEeccCC
Q 003591 186 SVFRLFNLASD 196 (808)
Q Consensus 186 ~~ir~ydl~~~ 196 (808)
-.+=+|++..+
T Consensus 127 KSVWiWe~ded 137 (312)
T KOG0645|consen 127 KSVWIWEIDED 137 (312)
T ss_pred CeEEEEEecCC
Confidence 99999999853
No 399
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=54.89 E-value=4.9e+02 Score=32.07 Aligned_cols=105 Identities=18% Similarity=0.319 Sum_probs=55.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-----HHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLS-----GAE 714 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS-----~aE 714 (808)
-+.+..++.-|...++..-.+.......+..+...++.|.+.+...++..+.-+.=++.||+-.+...|+=. .-|
T Consensus 164 l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~E 243 (739)
T PF07111_consen 164 LASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPE 243 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHH
Confidence 444566666666555544444444445555555667777777766444444333336667773323443321 233
Q ss_pred -HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003591 715 -HALKAELDHFEGVELDALHSSIEALRARLRR 745 (808)
Q Consensus 715 -k~~~~El~~~~~~~l~~L~~~ie~lk~r~~~ 745 (808)
....+-|+++.+ +-..|...+|-|.-|+..
T Consensus 244 r~~L~~tVq~L~e-dR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 244 REELLETVQHLQE-DRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 234445666664 444666666666555555
No 400
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.78 E-value=78 Score=32.54 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 634 EYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 634 ~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
.-+++.+.++..|+-.+..+++..-.++.....+|..++..-..|..++.+..+.-++..+-++.|
T Consensus 84 ael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 84 AELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888887777777777777777777777777776666666666555444444444433
No 401
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.77 E-value=10 Score=42.57 Aligned_cols=87 Identities=18% Similarity=0.356 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCCCCCCHHHHHHHHHH
Q 003591 645 HHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPG--AHKKPLSGAEHALKAEL 721 (808)
Q Consensus 645 rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~--~~~~~LS~aEk~~~~El 721 (808)
.++..++.++.....+|.+.+.++..+.++=+.|...|+++...+..|.+.++.... +.+ .-...|++.-.+|.+.+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~ 300 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQI 300 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHH
Confidence 344444445555555555555555555555555555555555555555444433111 111 12245777778898888
Q ss_pred hhhhhhhHHHH
Q 003591 722 DHFEGVELDAL 732 (808)
Q Consensus 722 ~~~~~~~l~~L 732 (808)
+.+.. +...|
T Consensus 301 ~~l~~-~~~~l 310 (344)
T PF12777_consen 301 EELEE-QLKNL 310 (344)
T ss_dssp HHHHH-HHHHH
T ss_pred HHHHH-Hhccc
Confidence 88774 44433
No 402
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=54.65 E-value=3.4e+02 Score=32.38 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=13.6
Q ss_pred CcHHHHHHHHHHHHHhh-------hhhHHHHHHHH
Q 003591 767 VQDAQISQLRSLMEKLS-------LVNSENLKKVK 794 (808)
Q Consensus 767 ~~~~q~~~l~~~L~~~~-------~~i~e~~~k~~ 794 (808)
+.+.=...=+-+|.++= -+|.|..+|++
T Consensus 252 fdp~rreia~~~l~~li~dgrihp~riee~~~~~~ 286 (514)
T TIGR03319 252 FDPVRREIARMALEKLIQDGRIHPARIEEMVEKAT 286 (514)
T ss_pred CchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44443344444444432 34666666654
No 403
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=54.59 E-value=1.3e+02 Score=37.38 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003591 622 HQYFNLFQENYVEYA 636 (808)
Q Consensus 622 ~~a~~~l~e~~~~~~ 636 (808)
.+..+.+-+.|+.+.
T Consensus 243 a~ilN~la~~Yi~~~ 257 (726)
T PRK09841 243 TRILNSIANNYLQQN 257 (726)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555556676554
No 404
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.56 E-value=1.9e+02 Score=33.42 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHhhhh
Q 003591 656 DQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH-LRNLPGAHKKPLSGAEHALKAELDHFE 725 (808)
Q Consensus 656 ~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~-L~~l~~~~~~~LS~aEk~~~~El~~~~ 725 (808)
.+...+..-++++......+..=.+|++.+...|+.+.+.++. |..-. .+...|=..|.+..+|+.++.
T Consensus 175 ~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q-~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 175 AVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQ-KKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHH
Confidence 3333333334444433333333446666666666667666666 43211 233333344555555555544
No 405
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=54.56 E-value=2.1e+02 Score=29.55 Aligned_cols=91 Identities=25% Similarity=0.328 Sum_probs=46.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEER---QSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKA 719 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~---~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~ 719 (808)
+..|+..|=..+.+|.+.+.+.+..-+++.+. ...++..|.+++.+--+|.+....+... +| +.-+
T Consensus 91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~----------ke-~~~~ 159 (190)
T PF05266_consen 91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEK----------KE-AKDK 159 (190)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHH
Confidence 67777777777777776666655544444443 2333333444333333333333333221 11 1125
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003591 720 ELDHFEGVELDALHSSIEALRARLRR 745 (808)
Q Consensus 720 El~~~~~~~l~~L~~~ie~lk~r~~~ 745 (808)
|+.+++. ....+...++.++.+-+.
T Consensus 160 ei~~lks-~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 160 EISRLKS-EAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 5666653 566666666666655443
No 406
>KOG4328 consensus WD40 protein [Function unknown]
Probab=54.54 E-value=83 Score=36.44 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=53.6
Q ss_pred CCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCC-------CCC
Q 003591 161 SNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGD-------HLW 233 (808)
Q Consensus 161 ~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~-------~~w 233 (808)
..+.+|-...|.|...+++.-...|++||+-|+.....+. .+.+.. +..-.-+++|... ..|
T Consensus 232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~--v~s~~~---------d~~~fs~~d~~~e~~~vl~~~~~ 300 (498)
T KOG4328|consen 232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE--VLSLDT---------DNIWFSSLDFSAESRSVLFGDNV 300 (498)
T ss_pred cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH--HhhcCc---------cceeeeeccccCCCccEEEeecc
Confidence 4567899999999999999999999999999997743321 112110 0111223344321 378
Q ss_pred CceEEEEEecCccEEE
Q 003591 234 DRFSVFVLFSDGSIYI 249 (808)
Q Consensus 234 ~~~tLyiL~~~GdIYa 249 (808)
|-|++|-+..+|.-|-
T Consensus 301 G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYE 316 (498)
T ss_pred cceEEEEeecCCccch
Confidence 8999999999888654
No 407
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=54.54 E-value=2.1e+02 Score=27.68 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
...+..++..|..|++. |.. .=.++.+..+..++.++.++....+.+..+.+|+++|..
T Consensus 22 ~~~v~~~l~~LEae~q~-L~~--kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 22 TASVESELNQLEAEYQQ-LEQ--KEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp -HHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35588888888877743 222 223555666777889999999999999999999999875
No 408
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.50 E-value=93 Score=33.52 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=80.6
Q ss_pred eeeeEEEeCCCCCEEEEEecC-eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEE-ecCCCCEEEEEe
Q 003591 106 FEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSW-HPYSDTHLGILS 183 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~W-HP~sd~~LvvLt 183 (808)
.-|+.+++.--|..||-+++. .|-|.+.-.. +. +..+. . ....+.+|=||.| ||.-++.|.--.
T Consensus 12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n-~~---------s~ll~--~--L~Gh~GPVwqv~wahPk~G~iLAScs 77 (299)
T KOG1332|consen 12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNN-GQ---------SKLLA--E--LTGHSGPVWKVAWAHPKFGTILASCS 77 (299)
T ss_pred hhhhHhhhhhhcceeeeecCCccEEEEEEcCC-CC---------ceeee--E--ecCCCCCeeEEeecccccCcEeeEee
Confidence 458888999999999998774 7778777443 11 12222 1 2356778999999 899999999999
Q ss_pred cCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 184 SDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 184 sD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
-|+.+-+|.=... .+ ++. .-+.+-+-.+-+++|.|.. -.|+|.+..+||+|-.|--
T Consensus 78 YDgkVIiWke~~g------~w--~k~---~e~~~h~~SVNsV~waphe--ygl~LacasSDG~vsvl~~ 133 (299)
T KOG1332|consen 78 YDGKVIIWKEENG------RW--TKA---YEHAAHSASVNSVAWAPHE--YGLLLACASSDGKVSVLTY 133 (299)
T ss_pred cCceEEEEecCCC------ch--hhh---hhhhhhcccceeecccccc--cceEEEEeeCCCcEEEEEE
Confidence 9999999986442 11 110 0001101124577888732 4689999999999987543
No 409
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.41 E-value=41 Score=31.34 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 658 HARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 658 l~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
..++.++++++++++++.+.|.+++++.++.-+-+.+++..
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 34444455555566666666777777766655666666665
No 410
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=54.19 E-value=35 Score=40.09 Aligned_cols=36 Identities=17% Similarity=0.415 Sum_probs=28.8
Q ss_pred cCCccceeEEEEecCCCCEEEE--EecCCeEEEEeccC
Q 003591 160 SSNVIRTLQVSWHPYSDTHLGI--LSSDSVFRLFNLAS 195 (808)
Q Consensus 160 ~~~~~~I~qv~WHP~sd~~Lvv--LtsD~~ir~ydl~~ 195 (808)
......|+-+.|+|+..+-|++ =+.|.+|++||+..
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 3456789999999998666544 37899999999975
No 411
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=54.15 E-value=1.4e+02 Score=25.89 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 003591 642 ELKHHAPQLKQIIDDQHARLSEAQNKILKVEER----QSRLEERIDHAVQQHNILEQRL 696 (808)
Q Consensus 642 el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~----~e~L~~Rie~a~~~Q~~L~~R~ 696 (808)
++.++++.++.++.....++..+.+....+... ...+.++++.+..+-+.|.+++
T Consensus 38 ~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 38 EQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566655555555555555555322 3344444444444444444333
No 412
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.04 E-value=4.2e+02 Score=30.97 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003591 629 QENYVEYAHKVHFELKHHAPQLKQIIDDQHARLS 662 (808)
Q Consensus 629 ~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~ 662 (808)
.++|+.+....-++...++..|+.+.++-..-|.
T Consensus 291 geayLaKL~~~l~~~~~~~~~ltqqwed~R~pll 324 (521)
T KOG1937|consen 291 GEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLL 324 (521)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6788888888888888888888887766554444
No 413
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.95 E-value=3.6e+02 Score=30.14 Aligned_cols=117 Identities=13% Similarity=0.153 Sum_probs=72.3
Q ss_pred CCCceEEEEeCCceEEEEeC-C--CcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEe-c
Q 003591 50 GAPKNLVAWDGASRLYYWDQ-N--AQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIG-S 125 (808)
Q Consensus 50 ~~~rnll~~~~~~~l~~w~~-~--~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G-~ 125 (808)
+-.|-+.+|.-|..+=+|+. + ..+-.+..+|... ++-.|+.=..|. | |+-||.+. +
T Consensus 23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--------~Si~rV~WAhPE--f----------GqvvA~cS~D 82 (361)
T KOG2445|consen 23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--------GSIWRVVWAHPE--F----------GQVVATCSYD 82 (361)
T ss_pred ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC--------CcEEEEEecCcc--c----------cceEEEEecC
Confidence 46788889988999999993 2 3455555777653 334666664443 3 45555543 3
Q ss_pred CeEEEEEe-CCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCC-CCEEEEEecCCeEEEEeccC
Q 003591 126 DGLCVMYL-YGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 126 ~~v~Vv~L-P~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s-d~~LvvLtsD~~ir~ydl~~ 195 (808)
+++.|-+= +..... .+ +.+... ++. .++++.|..|.|-|.- +--|+.+.+|++||+|+.-.
T Consensus 83 rtv~iWEE~~~~~~~-~~-----~~Wv~~-ttl--~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEA-HG-----RRWVRR-TTL--VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred Cceeeeeeccccccc-cc-----ceeEEE-EEe--ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 45555432 221110 01 111111 122 2456689999999998 77789999999999999854
No 414
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=53.92 E-value=1.9e+02 Score=30.62 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003591 631 NYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLR 700 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~ 700 (808)
.|+.+...|+.-+.||+..|+..-.-| +.|...+++ .+-+.++..+|.+-.++++.+.
T Consensus 113 ~Y~r~~~A~Kdll~rR~r~l~~~enA~-k~L~KaR~~-----------~kev~~aE~~~~~a~~~Fe~IS 170 (218)
T cd07662 113 YYLRESQAAKDLLYRRSRSLVDYENAN-KALDKARAK-----------NKDVLQAETTQQLCCQKFEKIS 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHc-----------CChHHHHHHHHHHHHHHHHHHH
Confidence 788888889999999999887654332 223333332 1334456666666666776655
No 415
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.84 E-value=1.2e+02 Score=34.68 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 003591 618 RSTLHQYFNLFQ 629 (808)
Q Consensus 618 ~~~L~~a~~~l~ 629 (808)
+..|.+-+.+|.
T Consensus 248 l~~L~~~lslL~ 259 (388)
T PF04912_consen 248 LNELERQLSLLD 259 (388)
T ss_pred HHHHHHHHHhcC
Confidence 344444444443
No 416
>PRK10698 phage shock protein PspA; Provisional
Probab=53.80 E-value=2.9e+02 Score=29.13 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 663 EAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 663 ~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
...+.+.++...-..|..+|++++.+++.|..|++.
T Consensus 110 ~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 110 LVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666778889999999999999999887
No 417
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=53.55 E-value=3.4e+02 Score=29.84 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHh
Q 003591 732 LHSSIEALRARLRRL 746 (808)
Q Consensus 732 L~~~ie~lk~r~~~~ 746 (808)
.+.+++.+..+++-+
T Consensus 259 ~~~~l~~~~~~L~~l 273 (319)
T PF02601_consen 259 KRQRLERLEARLEAL 273 (319)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444444444443
No 418
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.40 E-value=66 Score=39.43 Aligned_cols=133 Identities=14% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCCceEEEEeCCceEEEEeCCC-cEEEE-------EeeccCCCCCCcccc-----cCCceEeec-------CCCcceee
Q 003591 49 NGAPKNLVAWDGASRLYYWDQNA-QCLHR-------ISVRLGEPDPTSILA-----AFPSKVMRA-------DVKLNFEV 108 (808)
Q Consensus 49 ~~~~rnll~~~~~~~l~~w~~~~-~~l~~-------~~lR~~~~~~~~~~~-----~~~yk~L~~-------~~~l~f~i 108 (808)
+....+||...=|--+=+|+... .||.+ |.+-- +|- ...+. ...-|+-.+ =..+..=|
T Consensus 377 WSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF-nPv-DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lI 454 (712)
T KOG0283|consen 377 WSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF-NPV-DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLI 454 (712)
T ss_pred cccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe-ccc-CCCcEeecccccceEEeecCcCeeEeehhhhhhh
Confidence 44566777766688888999874 56655 22210 110 00000 001111110 01122347
Q ss_pred eEEEeCCCCCEEEEEec-CeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccC-CccceeEEEEecCCCCEEEEEecCC
Q 003591 109 SRISINRNGSALLLIGS-DGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSS-NVIRTLQVSWHPYSDTHLGILSSDS 186 (808)
Q Consensus 109 ~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~-~~~~I~qv~WHP~sd~~LvvLtsD~ 186 (808)
+.++.+|+|.+. |+|+ .|.|.++.-.. -+ .--.++|..+ -..+ ...+|.-.-++|..-.-|+|-++|+
T Consensus 455 TAvcy~PdGk~a-vIGt~~G~C~fY~t~~-lk------~~~~~~I~~~--~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS 524 (712)
T KOG0283|consen 455 TAVCYSPDGKGA-VIGTFNGYCRFYDTEG-LK------LVSDFHIRLH--NKKKKQGKRITGLQFFPGDPDEVLVTSNDS 524 (712)
T ss_pred eeEEeccCCceE-EEEEeccEEEEEEccC-Ce------EEEeeeEeec--cCccccCceeeeeEecCCCCCeEEEecCCC
Confidence 789999999875 5565 46666655321 11 0112333311 1111 2226888889998866889999999
Q ss_pred eEEEEec
Q 003591 187 VFRLFNL 193 (808)
Q Consensus 187 ~ir~ydl 193 (808)
.|||||+
T Consensus 525 rIRI~d~ 531 (712)
T KOG0283|consen 525 RIRIYDG 531 (712)
T ss_pred ceEEEec
Confidence 9999998
No 419
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.37 E-value=2.9e+02 Score=32.73 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAP---QLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRL 696 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~---~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~ 696 (808)
+...+.+.+|... ..+.....||+.+.+ ++++|..+-+.+|.+++++++.++-..+.+.+-+...++.|+.+..-.
T Consensus 199 ~y~~~~KelrdtN-~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 199 LYGDCVKELRDTN-TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4456777776332 333444566666665 455666667777888888888888777788888888888887776655
Q ss_pred HHHh
Q 003591 697 QHLR 700 (808)
Q Consensus 697 ~~L~ 700 (808)
+.+.
T Consensus 278 ~Ele 281 (596)
T KOG4360|consen 278 EELE 281 (596)
T ss_pred HHHH
Confidence 5443
No 420
>PRK12704 phosphodiesterase; Provisional
Probab=53.20 E-value=2.7e+02 Score=33.24 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHHHHHhhh-------hhHHHHHHHH
Q 003591 767 VQDAQISQLRSLMEKLSL-------VNSENLKKVK 794 (808)
Q Consensus 767 ~~~~q~~~l~~~L~~~~~-------~i~e~~~k~~ 794 (808)
+.|.-...-+..|+++-. .|.|+.+|++
T Consensus 258 ~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~ 292 (520)
T PRK12704 258 FDPIRREIARLALEKLVQDGRIHPARIEEMVEKAR 292 (520)
T ss_pred CChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHH
Confidence 455544555566655533 5777777765
No 421
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=53.15 E-value=68 Score=35.46 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003591 618 RSTLHQYFNLFQENYVEYAHKVHFELKHHAP 648 (808)
Q Consensus 618 ~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~ 648 (808)
-+.+.++++.|. +.++|..+||.|+.
T Consensus 17 eEti~qi~~aL~-----~L~~v~~diF~rI~ 42 (297)
T PF11945_consen 17 EETILQIADALE-----YLDKVSNDIFSRIS 42 (297)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 346777777776 77888888988775
No 422
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=53.07 E-value=1.3e+02 Score=26.50 Aligned_cols=69 Identities=16% Similarity=0.314 Sum_probs=50.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCc-HHHHHHHHHHHHHhhhhhHHHHHHHH
Q 003591 716 ALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQ-DAQISQLRSLMEKLSLVNSENLKKVK 794 (808)
Q Consensus 716 ~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~~~l~~~L~~~~~~i~e~~~k~~ 794 (808)
.|++|++.+.. .+..++..++.++....+...... . ..-...|.....+....+....++++
T Consensus 4 ~f~~~v~~i~~-~i~~i~~~~~~l~~l~~~~l~~~~----------------~d~~~~~el~~l~~~i~~~~~~~~~~lk 66 (103)
T PF00804_consen 4 EFFDEVQEIRE-DIDKIKEKLNELRKLHKKILSSPD----------------QDSELKRELDELTDEIKQLFQKIKKRLK 66 (103)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTSSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCC----------------cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999985 888999999888888666544421 1 24466677777777777778888888
Q ss_pred HHHHHHh
Q 003591 795 LVESALK 801 (808)
Q Consensus 795 ~~~~~~~ 801 (808)
.++...+
T Consensus 67 ~l~~~~~ 73 (103)
T PF00804_consen 67 QLSKDNE 73 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877754
No 423
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=53.05 E-value=3e+02 Score=29.09 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=17.0
Q ss_pred ccCcHHHHHHHHHHHHHhhhhhHHHH
Q 003591 765 NYVQDAQISQLRSLMEKLSLVNSENL 790 (808)
Q Consensus 765 ~~~~~~q~~~l~~~L~~~~~~i~e~~ 790 (808)
+.+++++.-.++.-+.-+...|..+.
T Consensus 145 ~~l~~a~~~~l~ae~~~l~~~~~~le 170 (240)
T PF12795_consen 145 SPLSEAQRWLLQAELAALEAQIEMLE 170 (240)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788887777777766555555443
No 424
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=53.03 E-value=1.5e+02 Score=36.85 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCcceeeeEEEeCCCCCEEEEE-ecCeEEEEEeCCCC
Q 003591 102 VKLNFEVSRISINRNGSALLLI-GSDGLCVMYLYGRT 137 (808)
Q Consensus 102 ~~l~f~i~~i~~s~sG~~Lal~-G~~~v~Vv~LP~~~ 137 (808)
|-+.-.|.+|++||+|++.|++ ++..|+++..|+..
T Consensus 289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 5577889999999999999987 77899999998653
No 425
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=52.72 E-value=87 Score=35.74 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=58.5
Q ss_pred CceEeecCCCcceeeeEEEeCCCCCEEEEEecC--eEEEEEeCCCCCCCC-CCceeeEEEEecceeeeccCCccceeEEE
Q 003591 94 PSKVMRADVKLNFEVSRISINRNGSALLLIGSD--GLCVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVS 170 (808)
Q Consensus 94 ~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~--~v~Vv~LP~~~~~~d-~~~~~c~t~~v~~~~~~~~~~~~~I~qv~ 170 (808)
.|-+.+-. ...|-.+.-+|-.+.+.-.|+. +|.|=.+|..--..+ ..++.+ | ..+.-+|--|.
T Consensus 73 ~~P~v~GH---t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~----L-------~gH~rrVg~V~ 138 (472)
T KOG0303|consen 73 SYPLVCGH---TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVE----L-------YGHQRRVGLVQ 138 (472)
T ss_pred CCCCccCc---cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEE----E-------eecceeEEEEe
Confidence 44455522 2355667788888888877775 556667886521111 111111 1 12344788999
Q ss_pred EecCCCCEEEEEecCCeEEEEeccCC
Q 003591 171 WHPYSDTHLGILSSDSVFRLFNLASD 196 (808)
Q Consensus 171 WHP~sd~~LvvLtsD~~ir~ydl~~~ 196 (808)
|||.+..-|..--.||+|.+||+..+
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tg 164 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTG 164 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCC
Confidence 99999888888889999999999774
No 426
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=52.66 E-value=8.3 Score=45.93 Aligned_cols=120 Identities=15% Similarity=0.253 Sum_probs=79.7
Q ss_pred CceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCC-CCCEEEEEecCeEEE
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINR-NGSALLLIGSDGLCV 130 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~-sG~~Lal~G~~~v~V 130 (808)
.+|-+.+..+..|+...-..+.++..++|+..+...++ +.. -++.+.+.| ++.|+|-.....|++
T Consensus 156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----------nTk---~vqG~tVdp~~~nY~cs~~dg~iAi 221 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----------NTK---YVQGITVDPFSPNYFCSNSDGDIAI 221 (783)
T ss_pred CccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----------hhh---hcccceecCCCCCceeccccCceee
Confidence 45556666688888877777788888889876432211 111 367888999 999999998777777
Q ss_pred EEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecC-CeEEEEeccCC
Q 003591 131 MYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD-SVFRLFNLASD 196 (808)
Q Consensus 131 v~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD-~~ir~ydl~~~ 196 (808)
-+-+..... ++ .+++=. ....+ -++.++.|-|...+-|.+|+-| ++||+|++..-
T Consensus 222 wD~~rnien----pl--~~i~~~----~N~~~-~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 222 WDTYRNIEN----PL--QIILRN----ENKKP-KQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ccchhhhcc----HH--HHHhhC----CCCcc-cceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 664433211 00 000000 00111 2689999999999899999998 78999999763
No 427
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=52.63 E-value=7e+02 Score=33.13 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 003591 660 RLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEA 738 (808)
Q Consensus 660 ~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~ 738 (808)
.+..++++...++.+.+....||+..+++-++|..|+..+.+ +. .=+...+|++.+- .+...|...-..
T Consensus 210 ~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~---------ei~~~~~el~k~~-~~~~~l~~e~~~ 279 (1294)
T KOG0962|consen 210 HLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIE---------EIEKSLKELEKLL-KQVKLLDSEHKN 279 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344444455555555455555555555555555555555222 11 1112223333333 244455555555
Q ss_pred HHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 003591 739 LRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVE 797 (808)
Q Consensus 739 lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~ 797 (808)
++...+++..+..... .+.......-..--...+.+.+....++.+++++++
T Consensus 280 l~~~~~~l~~~i~~~~-------~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~ 331 (1294)
T KOG0962|consen 280 LKKQISRLREKILKIF-------DGTDEELGELLSNFEERLEEMGEKLRELEREISDLN 331 (1294)
T ss_pred HHHHHHHHHhhccccc-------ccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555555443210 011111111122223344555555566666665555
No 428
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=52.62 E-value=2.9e+02 Score=34.19 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHH
Q 003591 658 HARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQ---HLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHS 734 (808)
Q Consensus 658 l~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~---~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~ 734 (808)
..++..+.+++..+++..++....++.++..-+.|.+.+. .++. ...+|-..+..-.++++.+.. ++..|++
T Consensus 181 ~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~----~~~~l~~~~~~~~~~i~~l~~-~l~~l~~ 255 (670)
T KOG0239|consen 181 ESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRR----NIKPLEGLESTIKKKIQALQQ-ELEELKA 255 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHH----hhhhhhhhhhHHHHHHHHHHH-HHHHHHH
Confidence 3344444444444444444444444444444444444322 2222 112222222233333444442 4555555
Q ss_pred HHHHHHHHHHHh
Q 003591 735 SIEALRARLRRL 746 (808)
Q Consensus 735 ~ie~lk~r~~~~ 746 (808)
.+..++..+..+
T Consensus 256 ~~~~l~~~~~~~ 267 (670)
T KOG0239|consen 256 ELKELNDQVSLL 267 (670)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 429
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=52.38 E-value=53 Score=36.58 Aligned_cols=87 Identities=24% Similarity=0.447 Sum_probs=56.3
Q ss_pred cccc-cCCCCCcccccccccCCC-CC--CCCCCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEee
Q 003591 24 VEWV-PLQKHPVFSAPDAVRNGG-GK--FNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMR 99 (808)
Q Consensus 24 ~~w~-~L~~hpiF~~~~~~~~~~-~~--~~~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~ 99 (808)
+-|+ .+.+-.+|+-+.- ++.. .- +...|| |+.|.++++||+|.+..+ .. ..
T Consensus 343 alW~Wdlq~l~l~avLiQ-k~piraf~WdP~~pr-L~vctg~srLY~W~psg~-~~----------------------V~ 397 (447)
T KOG4497|consen 343 ALWLWDLQNLKLHAVLIQ-KHPIRAFEWDPGRPR-LVVCTGKSRLYFWAPSGP-RV----------------------VG 397 (447)
T ss_pred eEEEEechhhhhhhhhhh-ccceeEEEeCCCCce-EEEEcCCceEEEEcCCCc-eE----------------------Ee
Confidence 5566 5655555554421 1111 00 111344 556878999999999652 11 11
Q ss_pred cCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCC
Q 003591 100 ADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGR 136 (808)
Q Consensus 100 ~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~ 136 (808)
.|--.|.|..+.-+-+|.+++|.|...-+++.+++.
T Consensus 398 -vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a~ve~e 433 (447)
T KOG4497|consen 398 -VPKKGFNIQKLQWLQPGEFIVLCGKDAFCVAIVEDE 433 (447)
T ss_pred -cCCCCceeeeEEecCCCcEEEEEcCCceEEEEecCC
Confidence 111258999999999999999999999999988865
No 430
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=52.36 E-value=3.1e+02 Score=29.02 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003591 627 LFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAH 706 (808)
Q Consensus 627 ~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~ 706 (808)
.|+ .|+.+...+++-+.+|+..++..-.-| ..|...+-+ .+.+.+++.+|.+-.++++.+-
T Consensus 110 ~L~-~Y~r~~~A~K~ll~rR~ral~~~e~A~-~~L~KaR~k-----------~kev~~aE~~~~ea~~~Fe~IS------ 170 (218)
T cd07663 110 LLR-YYMLNIEAAKDLLYRRARALADYENSN-KALDKARLK-----------SKDVKQAEAHQQECCQKFEKLS------ 170 (218)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHH------
Confidence 344 888888899999999999998776555 223322211 2334556666666666666655
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhHHHHHHH
Q 003591 707 KKPLSGAEHALKAELDHFEGVELDALHSS 735 (808)
Q Consensus 707 ~~~LS~aEk~~~~El~~~~~~~l~~L~~~ 735 (808)
+..++||.+++......++..
T Consensus 171 --------~~~k~El~rF~~~Rv~~Fk~~ 191 (218)
T cd07663 171 --------ESAKQELISFKRRRVAAFRKN 191 (218)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHH
Confidence 234456666665444444433
No 431
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=52.33 E-value=2.2e+02 Score=31.59 Aligned_cols=117 Identities=12% Similarity=0.232 Sum_probs=75.2
Q ss_pred CceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCC-CC
Q 003591 61 ASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSDGLCVMYLYGRT-CS 139 (808)
Q Consensus 61 ~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~-~~ 139 (808)
+.+|+|- -++++.+.-+||..... ++.- ..++.+.+|-|.+.|+|.=-++-.-.+=+-|+-++.+ ..
T Consensus 145 g~~LvVg-~~~r~v~iyDLRn~~~~---------~q~r--eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~ 212 (323)
T KOG1036|consen 145 GNRLVVG-TSDRKVLIYDLRNLDEP---------FQRR--ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA 212 (323)
T ss_pred CCEEEEe-ecCceEEEEEcccccch---------hhhc--cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH
Confidence 5555553 33467777788877522 1111 2456789999999998876666666555555555433 11
Q ss_pred C-CCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 140 S-DNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 140 ~-d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
. -.-..+|..-.-+.+ ..--+|-.+.|||. ..++++=-+|+.+-+||+..
T Consensus 213 ~skkyaFkCHr~~~~~~-----~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 213 QSKKYAFKCHRLSEKDT-----EIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred hhhceeEEeeecccCCc-----eEEEEeceeEeccc-cceEEecCCCceEEEccCcc
Confidence 0 112245655444432 22346889999999 77889999999999999976
No 432
>PF15456 Uds1: Up-regulated During Septation
Probab=52.03 E-value=2.3e+02 Score=27.33 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 003591 728 ELDALHSSIEALRARLRRL 746 (808)
Q Consensus 728 ~l~~L~~~ie~lk~r~~~~ 746 (808)
..+.+...++.+..|+..+
T Consensus 89 k~ee~~~eL~~le~R~~~~ 107 (124)
T PF15456_consen 89 KCEELAQELWKLENRLAEV 107 (124)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 433
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=51.89 E-value=2.3e+02 Score=28.58 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003591 617 GRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQII 654 (808)
Q Consensus 617 ~~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~ 654 (808)
|...+++.+|.|.++.-.. ..+|...+..++...
T Consensus 76 gF~vvA~eir~LA~~t~~~----~~~I~~~i~~i~~~~ 109 (213)
T PF00015_consen 76 GFAVVADEIRKLAEQTSES----AKEISEIIEEIQEQI 109 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhH----HHHHHHHHhhhhhhh
Confidence 3555666666665433322 233444444444443
No 434
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.89 E-value=1.4e+02 Score=33.77 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=27.0
Q ss_pred CccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 162 NVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 162 ~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
...-|..+++||.| -.|+=..+|.+||+||+..
T Consensus 333 hdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKN 365 (406)
T ss_pred ccceeeeeEEcCCC-eEEEEEecCCcEEEEEecc
Confidence 44579999999975 4566678999999999976
No 435
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.87 E-value=3.9e+02 Score=29.98 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 629 QENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEER---------QSRLEERIDHAVQQHNILEQRLQHL 699 (808)
Q Consensus 629 ~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~---------~e~L~~Rie~a~~~Q~~L~~R~~~L 699 (808)
.++|+... +.+. ....+.-++.++.+-..+|.+++.++...+.+ +.....-+.+++.+..++..++..+
T Consensus 156 ~~~~i~~~-~~~~-~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l 233 (362)
T TIGR01010 156 GERLINRL-NERA-RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQL 233 (362)
T ss_pred HHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44565543 2211 34555666666666666666666666666643 2334444555555555555555554
Q ss_pred hc
Q 003591 700 RN 701 (808)
Q Consensus 700 ~~ 701 (808)
+.
T Consensus 234 ~~ 235 (362)
T TIGR01010 234 RS 235 (362)
T ss_pred Hh
Confidence 43
No 436
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.70 E-value=3.6e+02 Score=30.00 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003591 729 LDALHSSIEALRARLRR 745 (808)
Q Consensus 729 l~~L~~~ie~lk~r~~~ 745 (808)
+...+..+++++.++..
T Consensus 161 ~~~a~~~l~~a~~~~~~ 177 (346)
T PRK10476 161 QRDAEVSLNQALLQAQA 177 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 437
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.69 E-value=92 Score=33.69 Aligned_cols=110 Identities=18% Similarity=0.279 Sum_probs=69.1
Q ss_pred CCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC
Q 003591 116 NGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 116 sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~ 195 (808)
++.+--|.|.-.+.|+++.+..+- -.|.+|-..+ .+-.|.|-+.-+.-+.+-.-|+.+|+||+..
T Consensus 28 t~q~yGl~G~G~L~ile~~~~~gi-----~e~~s~d~~D----------~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 28 TAQHYGLAGNGRLFILEVTDPKGI-----QECQSYDTED----------GLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred ehhhcccccCceEEEEecCCCCCe-----EEEEeeeccc----------ceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 556667889999999999643221 2355555433 3567899999999999999999999999654
Q ss_pred CCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEec-CccEEEEcccCCC
Q 003591 196 DVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYILCPVVPF 256 (808)
Q Consensus 196 ~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~-~GdIYalcP~lP~ 256 (808)
...|-+.|.-+ ..++.|.+.+... --.++..+ ||-|=.--|..|.
T Consensus 93 -~s~Pi~~~kEH-----------~~EV~Svdwn~~~----r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 93 -PSKPIHKFKEH-----------KREVYSVDWNTVR----RRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred -CCcchhHHHhh-----------hhheEEecccccc----ceeEEeeccCCceEeecCCCCc
Confidence 22233222111 2368888887621 12222223 6666665565554
No 438
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.45 E-value=98 Score=29.02 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRL 678 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L 678 (808)
.+||.++..|..++..-..++.+++..+..+.+...+|
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999877666
No 439
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.42 E-value=4e+02 Score=33.60 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 629 QENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDH 684 (808)
Q Consensus 629 ~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~ 684 (808)
-++.+..|.....+=..+++.|-..+.+|..++++.++++++..+..+++.++|++
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 555 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE 555 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555555666666666666666666555555555554444444444
No 440
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=51.29 E-value=4.3e+02 Score=30.34 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 624 YFNLFQENYVEYAHKV-HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE 673 (808)
Q Consensus 624 a~~~l~e~~~~~~~~v-~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~ 673 (808)
..+.+-+.|+.+.-.. .....+..+-|..++....++|.+..+++.+.+.
T Consensus 149 i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 149 VANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555444332 2223334445555555555555555555555553
No 441
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.04 E-value=2.6e+02 Score=31.22 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=22.0
Q ss_pred eEeecCCCcceeeeEEEeCCCCCEEEEEec-CeEEEE
Q 003591 96 KVMRADVKLNFEVSRISINRNGSALLLIGS-DGLCVM 131 (808)
Q Consensus 96 k~L~~~~~l~f~i~~i~~s~sG~~Lal~G~-~~v~Vv 131 (808)
++|+.. .-.|..|.+-|+|++..-+|. +.+..-
T Consensus 121 ~slK~H---~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 121 KSLKAH---KGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred eeeccc---ccccceeEecCCCceEEEEcCCceeeee
Confidence 355533 456999999999998665554 444333
No 442
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.03 E-value=6e+02 Score=31.89 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=15.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003591 640 HFELKHHAPQLKQIIDDQHARLSEAQN 666 (808)
Q Consensus 640 ~~el~rR~~~L~~e~~~Ql~~L~~l~e 666 (808)
--+|+.+|.+|.-|++.-...++.+++
T Consensus 108 iriLQn~c~~lE~ekq~lQ~ti~~~q~ 134 (1265)
T KOG0976|consen 108 IRILQNKCLRLEMEKQKLQDTIQGAQD 134 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777777776666554444443333
No 443
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=51.03 E-value=1.5e+02 Score=34.61 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=49.2
Q ss_pred eeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecC
Q 003591 106 FEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (808)
Q Consensus 106 f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD 185 (808)
-.|..+..||+|+||| .|+.+=+|+..+...++ + |........|-.+.|.-.+ .-|.+=.+|
T Consensus 453 ~pVysvafS~~g~ylA-sGs~dg~V~iws~~~~~------------l----~~s~~~~~~Ifel~Wn~~G-~kl~~~~sd 514 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLA-SGSLDGCVHIWSTKTGK------------L----VKSYQGTGGIFELCWNAAG-DKLGACASD 514 (524)
T ss_pred CceEEEEecCCCcEEE-ecCCCCeeEeccccchh------------e----eEeecCCCeEEEEEEcCCC-CEEEEEecC
Confidence 3678899999999998 57766666666544333 1 1111223347788898766 788888999
Q ss_pred CeEEEEecc
Q 003591 186 SVFRLFNLA 194 (808)
Q Consensus 186 ~~ir~ydl~ 194 (808)
+.+++-|+.
T Consensus 515 ~~vcvldlr 523 (524)
T KOG0273|consen 515 GSVCVLDLR 523 (524)
T ss_pred CCceEEEec
Confidence 999998873
No 444
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.97 E-value=2.1e+02 Score=32.24 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 003591 710 LSGAEHALKAELDHFEGVELDALHSSIEALR 740 (808)
Q Consensus 710 LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk 740 (808)
.+..|++..++|+. +++..+..+....
T Consensus 62 ~~~e~~~~i~~L~~----~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 62 LSAEERELIEKLEE----DIKERRCQLFDME 88 (330)
T ss_pred CChhHHHHHHHHHH----HHHHHHhhHHHHH
Confidence 66677777666663 3444444444333
No 445
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.93 E-value=2.9e+02 Score=31.48 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003591 632 YVEYAHKVHFELKHHAPQLKQIIDDQHARLS 662 (808)
Q Consensus 632 ~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~ 662 (808)
++.-+..-+.-|++..++|+..+++-..=+.
T Consensus 268 eL~eIk~~q~~Leesye~Lke~~krdy~fi~ 298 (455)
T KOG3850|consen 268 ELREIKETQALLEESYERLKEQIKRDYKFIA 298 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566688888888888866544443
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.89 E-value=68 Score=41.10 Aligned_cols=211 Identities=11% Similarity=0.086 Sum_probs=116.3
Q ss_pred ccccccCCCCCcccccccccCCCCCCCCCCceEEEEeC-CceEEEEeCCC--cEEEEEeeccCC-C--CCCcccccCCce
Q 003591 23 EVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG-ASRLYYWDQNA--QCLHRISVRLGE-P--DPTSILAAFPSK 96 (808)
Q Consensus 23 ~~~w~~L~~hpiF~~~~~~~~~~~~~~~~~rnll~~~~-~~~l~~w~~~~--~~l~~~~lR~~~-~--~~~~~~~~~~yk 96 (808)
..+|..|.+--||-.........+ ...+|.++..| .+.+|+-+... .|+.+.||-.-+ . +....-.+..-+
T Consensus 17 df~f~~l~k~riF~Sfa~~~e~lp---~~~sn~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~ 93 (1405)
T KOG3630|consen 17 DFGFKFLGKKRIFPSFAALNEKLP---FASSNNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENL 93 (1405)
T ss_pred chhheeccceeeecccccccccCc---hhhhhhhhcccccceEEEecCCcceeeeccccceeeccccccccccccccccc
Confidence 345557777778876533111111 34677777777 67777766665 666665552222 1 101000012222
Q ss_pred EeecCCCcceeeeEEEeCCCCCEEEEEecC-eEEEEEeC--CCC-CCCCCCceeeEEEEecceeeeccCCccceeEEEEe
Q 003591 97 VMRADVKLNFEVSRISINRNGSALLLIGSD-GLCVMYLY--GRT-CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWH 172 (808)
Q Consensus 97 ~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~-~v~Vv~LP--~~~-~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WH 172 (808)
.+. .+-++.|.+.++++++++.+++-++ +..|..+- .-. +........|.+-..- .......++.|.
T Consensus 94 t~~--v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~-------ek~vf~~~~~wn 164 (1405)
T KOG3630|consen 94 TFK--VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF-------EKPVFQLKNVWN 164 (1405)
T ss_pred cee--eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh-------cccccccccccc
Confidence 222 3336788899999999998887554 44444432 211 1111112223322221 123356788999
Q ss_pred cCCCCEEEEEecCCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEcc
Q 003591 173 PYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 173 P~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP 252 (808)
|.-....+|-.+|..||++-+.... +... .+. +...+.++|..+ -..-|+|=..+|-+--+-|
T Consensus 165 P~vp~n~av~l~dlsl~V~~~~~~~------~~v~---s~p----~t~~~Tav~WSp----rGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 165 PLVPLNSAVDLSDLSLRVKSTKQLA------QNVT---SFP----VTNSQTAVLWSP----RGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred CCccchhhhhccccchhhhhhhhhh------hhhc---ccC----cccceeeEEecc----ccceeeEecCCCeEEEeec
Confidence 9986656666667888888775411 1110 000 122355677766 3578888888998888888
Q ss_pred cCCCCCCcCh
Q 003591 253 VVPFGSVYKW 262 (808)
Q Consensus 253 ~lP~~~~~~~ 262 (808)
-++-+..+++
T Consensus 228 ~leik~~ip~ 237 (1405)
T KOG3630|consen 228 SLEIKSEIPE 237 (1405)
T ss_pred ccceeecccC
Confidence 8876666655
No 447
>PHA03247 large tegument protein UL36; Provisional
Probab=50.88 E-value=95 Score=43.22 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC-CCCCCCC
Q 003591 636 AHKVHFELKHHAPQLKQIIDDQH---ARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHL-RNLP-GAHKKPL 710 (808)
Q Consensus 636 ~~~v~~el~rR~~~L~~e~~~Ql---~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L-~~l~-~~~~~~L 710 (808)
.-|..+|+-|+++.|..-+-... +.-..++.+...++...+....|++.++.+.++|.+|++.| |=+. -.+.+..
T Consensus 955 ~~r~aed~vrqak~l~~~~~~~~Ls~e~r~rl~~r~~evEt~~~~aR~r~~~i~~~r~~~y~~L~~lLrPl~~FvGLRaa 1034 (3151)
T PHA03247 955 TRRLAEDALRQAKAMAAAKLTDELSPEARERLRARARAIEAMLEEARERAEAARAARERFFQKLQGVLRPLPDFGGLRAA 1034 (3151)
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 34556667777766665554332 33345677788888888899999999999999999999994 4343 2344554
Q ss_pred CHHHHHHHHHH----hhhhh----------hh-HHHHHHHHHHHHHHHHH
Q 003591 711 SGAEHALKAEL----DHFEG----------VE-LDALHSSIEALRARLRR 745 (808)
Q Consensus 711 S~aEk~~~~El----~~~~~----------~~-l~~L~~~ie~lk~r~~~ 745 (808)
...=+...+.| ..+++ .. ..+|+.-+.|.|..++.
T Consensus 1035 ~~~l~~L~~~ip~~~~~l~~~~~~AP~~V~~~l~sdLW~Lf~QYReaLe~ 1084 (3151)
T PHA03247 1035 PAVLATLRADLPGGWTDLPDAAQAAPPEVRAALRADLWGLLGQYREALEH 1084 (3151)
T ss_pred HhHHHHHHhhcccccccHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHhC
Confidence 44433333321 11111 01 23577777777777665
No 448
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=50.53 E-value=1e+02 Score=36.06 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=61.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhhhhH-------------HHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcH
Q 003591 703 PGAHKKPLSGAEHALKAELDHFEGVEL-------------DALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQD 769 (808)
Q Consensus 703 ~~~~~~~LS~aEk~~~~El~~~~~~~l-------------~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (808)
+..-+-|||.-|+.+..-|+.+++++. ..+.+.|+.++.-++..... .-...
T Consensus 75 ~d~~pDPLsPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~---------------~~~e~ 139 (508)
T PF00901_consen 75 GDEPPDPLSPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKV---------------EEEEE 139 (508)
T ss_pred CCCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---------------hhhHH
Confidence 445668999999999888888875221 22333333333333221111 12467
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccC
Q 003591 770 AQISQLRSLMEKLSLVNSENLKKVKLVESALKKQESSR 807 (808)
Q Consensus 770 ~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~~~~ 807 (808)
.|++.|.++|+..+...++=.++++.|..+|...++-|
T Consensus 140 ~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~R 177 (508)
T PF00901_consen 140 NQIEILEKALKSYGKIVKEENKQLDRLARALQKESRER 177 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999987766544
No 449
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=50.42 E-value=33 Score=39.77 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=44.2
Q ss_pred eEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeE
Q 003591 109 SRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVF 188 (808)
Q Consensus 109 ~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~i 188 (808)
.++-.||+|+|||-=...+-+-+- + |.. |+-+... +.....+..|.|||..-+-++.-.-|+.|
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~w--d-wkt-------~kl~~~l------kah~~~ci~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFW--D-WKT-------TKLVSKL------KAHDQPCIGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEe--e-chh-------hhhhhcc------ccCCcceEEEEecCCCcceeEecccCcee
Confidence 478899999999854333322221 1 100 2222222 12345799999999998888888889999
Q ss_pred EEEe
Q 003591 189 RLFN 192 (808)
Q Consensus 189 r~yd 192 (808)
.+||
T Consensus 500 kiwd 503 (503)
T KOG0282|consen 500 KIWD 503 (503)
T ss_pred EecC
Confidence 9996
No 450
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=50.33 E-value=3.9e+02 Score=29.50 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
.-+||.+++++-+.-.+|.-+|-.+|+++-+
T Consensus 337 lvkIkqavsKLk~et~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 337 LVKIKQAVSKLKEETQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HHHHHHHHHHHHHHHHhhhhheehhhHHHHH
Confidence 4578889999999999999999999988743
No 451
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=50.26 E-value=1.9e+02 Score=30.02 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003591 695 RLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 695 R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~ 747 (808)
.-+.|+.+.. ....-+..=+...+.|+.+++ ++..|++-+..=+.-++.+.
T Consensus 144 K~~ql~~~~~-~~~~~~~~l~~v~~Dl~~ie~-QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 144 KERQLRELEE-GRSKSGKNLKSVREDLDTIEE-QVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHhhhc-cCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 3344666532 222333333677788888884 88888887766666666554
No 452
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=50.25 E-value=1.2e+02 Score=27.00 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHA 685 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a 685 (808)
.....+++|.+++..||.-++.=..++..++++-+++....+-|..=|..+
T Consensus 13 ~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457888888999998888888888888888888888877776655553
No 453
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=50.22 E-value=79 Score=36.93 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=41.6
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec
Q 003591 105 NFEVSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
++-++.|..||+|++++|.|...-.|..-.. .+-+.+ | .=..+.|++ .+..+|+.+
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~---------~r~k~~--G-----------~g~~~vw~~--~n~yAv~~~ 87 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALA---------WRNKAF--G-----------SGLSFVWSS--RNRYAVLES 87 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTT---------TEEEEE--E-----------E-SEEEE-T--SSEEEEE-T
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccC---------Cccccc--C-----------ceeEEEEec--CccEEEEEC
Confidence 4568999999999999999999988887111 001111 1 125678999 556999999
Q ss_pred CCeEEEE-ec
Q 003591 185 DSVFRLF-NL 193 (808)
Q Consensus 185 D~~ir~y-dl 193 (808)
++.|.+| |+
T Consensus 88 ~~~I~I~kn~ 97 (443)
T PF04053_consen 88 SSTIKIYKNF 97 (443)
T ss_dssp TS-EEEEETT
T ss_pred CCeEEEEEcC
Confidence 9999996 44
No 454
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=50.21 E-value=4.1e+02 Score=29.74 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred eEEEEeCCce--------EEEEeCCC-cEEEE-------EeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCC
Q 003591 54 NLVAWDGASR--------LYYWDQNA-QCLHR-------ISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNG 117 (808)
Q Consensus 54 nll~~~~~~~--------l~~w~~~~-~~l~~-------~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG 117 (808)
|+|+.-+|+. +++||+.. +|+.. .++|....----+....-|-.--++.|-...+-....||.|
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCc
Q ss_pred CEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCC-ccceeEEEEecCC-------CCEEEEEecCCeE-
Q 003591 118 SALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSN-VIRTLQVSWHPYS-------DTHLGILSSDSVF- 188 (808)
Q Consensus 118 ~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~-~~~I~qv~WHP~s-------d~~LvvLtsD~~i- 188 (808)
+.++.-...-+++..|+. +|-.+||- .+..... ...|..|.=-+.+ ++-|.+-...+|+
T Consensus 139 -lC~~~~~~~k~~LafPg~---------k~GqvQi~--dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 139 -LCSLCPTSNKSLLAFPGF---------KTGQVQIV--DLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred -eEeecCCCCceEEEcCCC---------ccceEEEE--EhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Q ss_pred EEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEE
Q 003591 189 RLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (808)
Q Consensus 189 r~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYal 250 (808)
|+||... .++-|+|. ++..--++-.++|++ +.-=|-++..-|-+..+
T Consensus 207 RIFdt~~--g~~l~E~R---------RG~d~A~iy~iaFSp----~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 207 RIFDTED--GTLLQELR---------RGVDRADIYCIAFSP----NSSWLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEcCC--CcEeeeee---------cCCchheEEEEEeCC----CccEEEEEcCCCeEEEE
No 455
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=50.20 E-value=3.3e+02 Score=32.60 Aligned_cols=82 Identities=15% Similarity=-0.007 Sum_probs=49.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 003591 641 FELKHHAPQLKQIIDDQHARLSE--AQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALK 718 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~--l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~ 718 (808)
..++++++++++|++.=+.++.. +.|+-.+....==..+..||++-|-.++|.+..++.. .++..+|+...+|.
T Consensus 369 ~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~IgDiie~l~~~~~kk~----~~~~~fse~~~~el 444 (533)
T COG1283 369 RKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHIGDIIERLLELADKKI----ANGRAFSEDGLEEL 444 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHH
Confidence 33566666666666666655552 1111111000111124556777777777877777744 47889999999999
Q ss_pred HHHhhhhh
Q 003591 719 AELDHFEG 726 (808)
Q Consensus 719 ~El~~~~~ 726 (808)
+++-.+-.
T Consensus 445 ~~l~~~~~ 452 (533)
T COG1283 445 DALFALTL 452 (533)
T ss_pred HHHHHHHH
Confidence 99877764
No 456
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.17 E-value=1.7e+02 Score=35.07 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC---CCHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhcC
Q 003591 688 QHNILEQRLQHLRNLPGAHKKP---LSGAEHALKAELDHFEG--VELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 688 ~Q~~L~~R~~~L~~l~~~~~~~---LS~aEk~~~~El~~~~~--~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
+-+++.+|+..|+.+.+.++.. +=..-.++..||..+.. ..++.|+++++.++..+....+.
T Consensus 298 ~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~ 364 (557)
T COG0497 298 RLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEA 364 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554443333332 23344555566665554 23455666666666655554443
No 457
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.13 E-value=66 Score=39.16 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=46.3
Q ss_pred eeEEEeCCCCCEEEEEec-CeEEEEEeCCCC-CCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecC
Q 003591 108 VSRISINRNGSALLLIGS-DGLCVMYLYGRT-CSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSD 185 (808)
Q Consensus 108 i~~i~~s~sG~~Lal~G~-~~v~Vv~LP~~~-~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD 185 (808)
++-+.++|.|++++.-|+ +.+-|-.++... .+ + |. ....+|..+.+||+. --|.--.+|
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~-e---------------f~--~~e~~v~sle~hp~e-~Lla~Gs~d 217 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK-E---------------FK--SHEGKVQSLEFHPLE-VLLAPGSSD 217 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeeccccccccc-c---------------cc--cccccccccccCchh-hhhccCCCC
Confidence 667889999999999999 788888887542 22 1 11 123456666688874 001112468
Q ss_pred CeEEEEeccC
Q 003591 186 SVFRLFNLAS 195 (808)
Q Consensus 186 ~~ir~ydl~~ 195 (808)
.++||||+..
T Consensus 218 ~tv~f~dlet 227 (825)
T KOG0267|consen 218 RTVRFWDLET 227 (825)
T ss_pred ceeeeeccce
Confidence 9999999964
No 458
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=49.87 E-value=65 Score=40.64 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=55.4
Q ss_pred ceeeeEEEeCCCCCEEEEEecCeEEEE-Ee---CCCCCCCC------CCceeeEEEEecceeeeccCCccceeEEEEecC
Q 003591 105 NFEVSRISINRNGSALLLIGSDGLCVM-YL---YGRTCSSD------NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPY 174 (808)
Q Consensus 105 ~f~i~~i~~s~sG~~Lal~G~~~v~Vv-~L---P~~~~~~d------~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~ 174 (808)
+-.|.=+-.||+|.|||.=+++.+..+ +. +..+.... ...-+|...-. .+...|..+.|-|
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~--------~H~~DV~Dv~Wsp- 139 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR--------GHDSDVLDVNWSP- 139 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe--------cCCCccceeccCC-
Confidence 345666679999999999999866444 11 11111111 12233433333 3456899999999
Q ss_pred CCCEEEEEecCCeEEEEeccC
Q 003591 175 SDTHLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 175 sd~~LvvLtsD~~ir~ydl~~ 195 (808)
-|..||-+.-||+|-+||...
T Consensus 140 ~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CccEEEEecccceEEEEcccc
Confidence 778889999999999999976
No 459
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.79 E-value=4.7e+02 Score=30.35 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003591 680 ERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 680 ~Rie~a~~~Q~~L~~R~~~ 698 (808)
+++.+-.++|++|.-++++
T Consensus 275 E~l~Ee~rrhrEil~k~eR 293 (502)
T KOG0982|consen 275 ESLSEEERRHREILIKKER 293 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444
No 460
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=49.78 E-value=4.4e+02 Score=30.83 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 631 NYVEYAHKVHFELKHHAP--QLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 631 ~~~~~~~~v~~el~rR~~--~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.|+........-+.+|.. .....+..|..++.++..++. ..+..+++..+.+.+.|..|+..
T Consensus 283 ~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~ld~~~~rL~------~~l~~~~~~~~~~~~~l~~rl~~ 346 (440)
T COG1570 283 RLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLR------RALENQLALKKQRLERLTQRLNP 346 (440)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555554 444555555555555555443 34556666666666667766666
No 461
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=49.78 E-value=2.3e+02 Score=27.35 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 003591 677 RLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRA 741 (808)
Q Consensus 677 ~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~ 741 (808)
.....+++++++++.|.+++.+|+.-- ...+|||.++-+ +=+-++.+ +=+-.+++-++|..
T Consensus 57 ~Qr~~l~~l~~~l~~l~~eL~~Lr~~~-l~rRPLtk~dVe--eLV~~Ise-QPK~IEkQte~Lte 117 (126)
T PF07028_consen 57 SQRSELKELKQELDVLSKELQALRKEY-LERRPLTKEDVE--ELVLRISE-QPKFIEKQTEALTE 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHH--HHHHHHHh-CcHHHHHHHHHHHH
Confidence 345778888999999999999999822 357999986643 22334442 33334444444433
No 462
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=49.75 E-value=1.2e+02 Score=36.02 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 618 RSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQ 697 (808)
Q Consensus 618 ~~~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~ 697 (808)
+..+..++..|...-+.-...-+. =.|-+++|...+++.+.....+..++..+.++.+.+.+-+.+.+-+++.|.+|.+
T Consensus 406 l~~V~~ii~~Lt~~~~~~L~~Ik~-SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr 484 (507)
T PF05600_consen 406 LSAVEEIISQLTNPRTQHLFMIKS-SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTR 484 (507)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444555555553222222222222 2344666666666666666655555555555544444444444444444444444
Q ss_pred HHh
Q 003591 698 HLR 700 (808)
Q Consensus 698 ~L~ 700 (808)
.|+
T Consensus 485 ~Lq 487 (507)
T PF05600_consen 485 ELQ 487 (507)
T ss_pred HHH
Confidence 444
No 463
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=49.37 E-value=5.2e+02 Score=31.45 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 003591 771 QISQLRSLMEKLSLVNSENLKKVKLVESALKK 802 (808)
Q Consensus 771 q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~ 802 (808)
|...||++|+.+=.-|++-..+++.++-.|.|
T Consensus 275 rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~ 306 (861)
T KOG1899|consen 275 RDNTLKNALESLMRANEQKDRFIESLRNYLNN 306 (861)
T ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHhhh
Confidence 34488888877776777766777766666654
No 464
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=49.31 E-value=88 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHH
Q 003591 713 AEHALKAELDHFEG---VELDALHSSIEALRARLR 744 (808)
Q Consensus 713 aEk~~~~El~~~~~---~~l~~L~~~ie~lk~r~~ 744 (808)
.+....+||+.+.. .....+..+|++++....
T Consensus 39 ~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 39 QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777887764 122455666666666544
No 465
>PF13166 AAA_13: AAA domain
Probab=49.22 E-value=5e+02 Score=31.85 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 674 RQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 674 ~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
..+.+...++.+.+.-+.+.+.++.
T Consensus 323 ~~~~~~~~~~~l~~~l~~l~~~L~~ 347 (712)
T PF13166_consen 323 DKEELKSAIEALKEELEELKKALEK 347 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555
No 466
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=49.16 E-value=83 Score=38.39 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=72.0
Q ss_pred eeeEEEeCCCCCEEEEEecCeEE-EEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCC-EEEEEec
Q 003591 107 EVSRISINRNGSALLLIGSDGLC-VMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDT-HLGILSS 184 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~~~v~-Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~-~LvvLts 184 (808)
.|--+.++|+|.+||-.|..+.. |-.+-. . .| +|........|-.+.|||.... -|+.=..
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~---~------~~--------th~fkG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKN---G------YC--------THSFKGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeC---C------EE--------EEEecCCCceEEEEEeCCccchhheeecCC
Confidence 46678899999888888876543 333311 1 13 2333455678999999999854 4466667
Q ss_pred CCeEEEEeccCCCCCCceEEEeccCCCCCCCCCCCcceEEEEecCCCCCCceEEEEEecCccEEEEccc
Q 003591 185 DSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCPV 253 (808)
Q Consensus 185 D~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~~GdIYalcP~ 253 (808)
|+++|+||+..+.. .++... .-++ .+.+.+|++ +..+++-+.+| +|-.++-+
T Consensus 170 D~~v~vwnl~~~~t------cl~~~~--~H~S----~vtsL~~~~----d~~~~ls~~RD-kvi~vwd~ 221 (775)
T KOG0319|consen 170 DGTVRVWNLNDKRT------CLHTMI--LHKS----AVTSLAFSE----DSLELLSVGRD-KVIIVWDL 221 (775)
T ss_pred CceEEEEEcccCch------HHHHHH--hhhh----heeeeeecc----CCceEEEeccC-cEEEEeeh
Confidence 99999999975433 122100 0011 367899988 35777777774 66666665
No 467
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=49.14 E-value=2.5e+02 Score=33.60 Aligned_cols=93 Identities=13% Similarity=0.301 Sum_probs=56.9
Q ss_pred eeeEEEeCCCCCEEEEEecC------eEEEEEeCCCC---CC--C---C-------CCceeeEEEEecc-----------
Q 003591 107 EVSRISINRNGSALLLIGSD------GLCVMYLYGRT---CS--S---D-------NKTIICRTVSVGS----------- 154 (808)
Q Consensus 107 ~i~~i~~s~sG~~Lal~G~~------~v~Vv~LP~~~---~~--~---d-------~~~~~c~t~~v~~----------- 154 (808)
-|++-.-||++.+||.+.+. .+.+|++|... ++ + | .+...| +.++-
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc--vkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC--VKVDRHTKSKVKGQFS 425 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE--EEEEeeccccccceEe
Confidence 58888999999999999774 89999999642 11 0 0 011112 22210
Q ss_pred --eeeeccCC---------ccceeEEEEecCCCC--EEEEEecCCeEEEEeccCCCCCCc
Q 003591 155 --QIYFSSSN---------VIRTLQVSWHPYSDT--HLGILSSDSVFRLFNLASDVMQPE 201 (808)
Q Consensus 155 --~~~~~~~~---------~~~I~qv~WHP~sd~--~LvvLtsD~~ir~ydl~~~~~~p~ 201 (808)
++|.+... +-.|..-.|-|.|+. .|..=|.-+++++|.+......|.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 12222222 224566789999974 444555568999999975444443
No 468
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=49.02 E-value=5e+02 Score=30.39 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHH
Q 003591 646 HAPQLKQIIDDQHARLSEAQNKILKVE-------ERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHAL 717 (808)
Q Consensus 646 R~~~L~~e~~~Ql~~L~~l~e~i~~l~-------~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~ 717 (808)
|++.++.|++--.+--.++.+-+...- +.-..|.+++.++-.+|..|++-++.+++ ..+++.+. +|.+|
T Consensus 310 ~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG---~~~rF 386 (488)
T PF06548_consen 310 LAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRIMEGIEDVKKAAAKAGVKG---AESRF 386 (488)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---chHHH
Confidence 344444444443343444444333332 23455667777777777777777777766 55566655 55555
Q ss_pred HH
Q 003591 718 KA 719 (808)
Q Consensus 718 ~~ 719 (808)
++
T Consensus 387 ~~ 388 (488)
T PF06548_consen 387 IN 388 (488)
T ss_pred HH
Confidence 43
No 469
>PF13514 AAA_27: AAA domain
Probab=49.00 E-value=7.5e+02 Score=32.44 Aligned_cols=135 Identities=17% Similarity=0.210 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhh--hhHHHHHHHHHHHH
Q 003591 664 AQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEG--VELDALHSSIEALR 740 (808)
Q Consensus 664 l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~--~~l~~L~~~ie~lk 740 (808)
..+++.++......+..++..+.+..+...++++.++. +......+.+...+.-.+......+ ..+......++..+
T Consensus 344 ~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~~~~d~~~~~~~~~~~~~~~~ 423 (1111)
T PF13514_consen 344 ARERIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQRLGDLEARLQEAEQALEAAE 423 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 34455555556677777788777777777777777555 4434444555555555554554332 24455666666666
Q ss_pred HHHHHhhcCCCCCCCCcccccc----CcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003591 741 ARLRRLTQSPEGSPGNQQRQTL----GKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQ 803 (808)
Q Consensus 741 ~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~ 803 (808)
.++......-. .|...- .-..-+.+++......+.+..........++..++..+...
T Consensus 424 ~~l~~~l~~L~-----~w~~~~~~l~~~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1111)
T PF13514_consen 424 RRLAAALAALG-----PWSGDLDALAALPLPSRETVEAFRAEFEELERQLRRARDRLEELEEELARL 485 (1111)
T ss_pred HHHHHHHHhcC-----CCCCChHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444432 111111 11223667777777777777777777777777766665543
No 470
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=48.84 E-value=81 Score=29.53 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-Hhc
Q 003591 678 LEERIDHAVQQHNILEQRLQH-LRN 701 (808)
Q Consensus 678 L~~Rie~a~~~Q~~L~~R~~~-L~~ 701 (808)
.++=+.+++..|.++.+.... +++
T Consensus 48 vddl~~q~k~~~~e~e~K~~r~i~~ 72 (108)
T COG3937 48 VDDLLRQAKEAQGELEEKIPRKIEE 72 (108)
T ss_pred HHHHHHHHHHHhhhHHHhhhHHHHH
Confidence 344455555566666655554 444
No 471
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=48.68 E-value=47 Score=26.35 Aligned_cols=31 Identities=29% Similarity=0.178 Sum_probs=26.0
Q ss_pred cceeeeEEEeCCCCCEEEEEecCe-EEEEEeC
Q 003591 104 LNFEVSRISINRNGSALLLIGSDG-LCVMYLY 134 (808)
Q Consensus 104 l~f~i~~i~~s~sG~~Lal~G~~~-v~Vv~LP 134 (808)
+..+|..+.-||+.+++|+...++ |.|-++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 446789999999999999998875 8887773
No 472
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=48.68 E-value=1.2e+02 Score=32.99 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003591 659 ARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNL 702 (808)
Q Consensus 659 ~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l 702 (808)
.+++..+|+.++|+....+|-+..+. +--.+..|+++|.++
T Consensus 40 sr~~~~~ekke~i~r~n~k~~d~v~~---~~~~~~~~~erl~~l 80 (359)
T KOG4398|consen 40 SRAQRHQEKKEKIQRHNRKLGDLVEK---KTIDLRSHYERLANL 80 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhcchHHHH---HHHHHHHHHHHHHHH
Confidence 57778888888888776666555554 444455555554443
No 473
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.65 E-value=3.1e+02 Score=33.33 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=38.1
Q ss_pred eEEEEeccee--eeccCCccceeEEEEecCCC-CEEEEEecCCeEEEEeccC
Q 003591 147 CRTVSVGSQI--YFSSSNVIRTLQVSWHPYSD-THLGILSSDSVFRLFNLAS 195 (808)
Q Consensus 147 c~t~~v~~~~--~~~~~~~~~I~qv~WHP~sd-~~LvvLtsD~~ir~ydl~~ 195 (808)
.|.+++|... |-...+...|-.|.++|.+| ++|+.=..|.++++||.+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 4667777531 11234566799999999995 9999999999999999876
No 474
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.64 E-value=76 Score=27.26 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 003591 690 NILEQRLQH 698 (808)
Q Consensus 690 ~~L~~R~~~ 698 (808)
+++.+++++
T Consensus 37 ~~~~~~l~~ 45 (71)
T PF10779_consen 37 KNLNKQLEK 45 (71)
T ss_pred HHHHHHHHH
Confidence 333333333
No 475
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=48.32 E-value=1.4e+02 Score=30.45 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003591 677 RLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 677 ~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
.+.+++..++++-..|...+++
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~ 132 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDK 132 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666777777
No 476
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=48.27 E-value=3e+02 Score=27.67 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 624 YFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE 673 (808)
Q Consensus 624 a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~ 673 (808)
++.-.+++.+..++.++.|.. .|+.|+.+=..++.++-++++++..
T Consensus 10 ~ie~sK~qIf~I~E~~R~E~~----~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 10 TIESSKEQIFEIAEQARQEYE----RLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446777777777766533 3444444444444544445554443
No 477
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=48.22 E-value=1.9e+02 Score=27.33 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 003591 708 KPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQ 748 (808)
Q Consensus 708 ~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~ 748 (808)
.++.+|.+-+.+.++.++. .++.|.+.+..++.++..+..
T Consensus 82 ~~~~eA~~~l~~~~~~l~~-~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEK-AIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred ecHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666663 666666666666666555443
No 478
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=48.22 E-value=2.3e+02 Score=26.39 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILE 693 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~ 693 (808)
...+|.-+=+.+...|+.+++.-=..|..+.++++.+.=+...|.+|++. .|++|.
T Consensus 16 vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~---LQ~El~ 71 (102)
T PF10205_consen 16 VLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEV---LQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34455666677778889998888888999999999999999999999998 455554
No 479
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=48.14 E-value=2.1e+02 Score=31.12 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAV 686 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~ 686 (808)
+-.+|.-|++.++.++..=..+.+.+.++|++=...-+++.+|++.++
T Consensus 113 aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 113 AIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777666666666777766666666666666666554
No 480
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=48.08 E-value=2.4e+02 Score=29.27 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003591 635 YAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRN 701 (808)
Q Consensus 635 ~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~ 701 (808)
+.++.-++=+.|+.+|+..+..+..+-..+..+-+..+.....|..+-..++.+-+.|..++..|.+
T Consensus 116 ~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 116 QLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777777777777777777777777777777777777777777777777777777665
No 481
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=48.07 E-value=5.1e+02 Score=31.15 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhh
Q 003591 772 ISQLRSLMEKLS 783 (808)
Q Consensus 772 ~~~l~~~L~~~~ 783 (808)
++.|..++...+
T Consensus 387 ~~~le~~~~~~~ 398 (582)
T PF09731_consen 387 LKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 482
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=47.93 E-value=34 Score=40.30 Aligned_cols=67 Identities=18% Similarity=0.340 Sum_probs=43.5
Q ss_pred EEEeCCCCCEEEEEecC----eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEec-
Q 003591 110 RISINRNGSALLLIGSD----GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS- 184 (808)
Q Consensus 110 ~i~~s~sG~~Lal~G~~----~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts- 184 (808)
.+..||.|++++|+|=. .+.|.+.+.+- | |. .+...+ -.=+.|||.|.-.|..-|+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---------~----i~--~~~a~~----tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---------L----IA--KFKAAN----TTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchh---------h----cc--ccccCC----ceEEEEcCCCcEEEEEeccc
Confidence 67889999999998754 55555555431 0 00 111111 1235699998877777777
Q ss_pred ----CCeEEEEeccC
Q 003591 185 ----DSVFRLFNLAS 195 (808)
Q Consensus 185 ----D~~ir~ydl~~ 195 (808)
||-++||+.+-
T Consensus 377 RlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTG 391 (566)
T ss_pred cEEecCCeEEEEecC
Confidence 99999999743
No 483
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=47.93 E-value=1.6e+02 Score=33.66 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred EEecCeEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccC------
Q 003591 122 LIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLAS------ 195 (808)
Q Consensus 122 l~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~------ 195 (808)
+-.+..|.+++-|...-+ ......| .-.+..+...|..|.|-| -+++||.=.-|.++|+||+..
T Consensus 83 v~te~~l~lvyqpqavfr-vrpvtrC--------ssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t 152 (480)
T KOG0271|consen 83 VSTEDVLTLVYQPQAVFR-VRPVTRC--------SSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFT 152 (480)
T ss_pred cchhheeeEEeccchhhc-cccccee--------ccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCccee
Q ss_pred ---------------------CCCCCceEEEeccC---CCCCCCCCCCcceEEEEecCCCCCCceEEEEEec-CccEEE
Q 003591 196 ---------------------DVMQPEQEYYLQPV---EPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFS-DGSIYI 249 (808)
Q Consensus 196 ---------------------~~~~p~q~~~l~~~---~~g~~~~~~~~~~vsf~Fg~~~~w~~~tLyiL~~-~GdIYa 249 (808)
++..--+..-.+|. ..|+++..-..-+++++|-|-|.-.+--.++-.+ ||+|..
T Consensus 153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
No 484
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=47.86 E-value=5.6e+02 Score=30.67 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003591 632 YVEYAHKVHFELKHHAPQLKQIIDDQHA-RLS---EAQNKILKVEERQSRLE-ERIDHAVQQHNILEQRLQHLRNLPGAH 706 (808)
Q Consensus 632 ~~~~~~~v~~el~rR~~~L~~e~~~Ql~-~L~---~l~e~i~~l~~~~e~L~-~Rie~a~~~Q~~L~~R~~~L~~l~~~~ 706 (808)
.+...+..+.+.++|.-.-|.++-.++. ++. ..+++...++++-++.+ +|++...++++.-+++-++.- +
T Consensus 169 l~~~~~e~~~~~~~r~~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d-~---- 243 (591)
T KOG2412|consen 169 LVEKLSETRKEVKRRLLEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKED-E---- 243 (591)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-H----
Confidence 3445567777777776444444444444 333 34444555554433333 344444444333333333311 0
Q ss_pred CCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 003591 707 KKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLT 747 (808)
Q Consensus 707 ~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~ 747 (808)
.+|+...++++..++ +.+.-++.+|+.+++.....
T Consensus 244 -----~~~~~eqekiR~~ee-kqeee~ke~e~~~~k~~q~~ 278 (591)
T KOG2412|consen 244 -----EAELQEQEKIRAEEE-KQEEERKEAEEQAEKEVQDP 278 (591)
T ss_pred -----HHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCc
Confidence 244555555555443 44556666777766655433
No 485
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=47.78 E-value=1.2e+02 Score=26.65 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 620 TLHQYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEA-QNKILKVEERQSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 620 ~L~~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l-~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
++.+..+.+. ..+..+..++.|+.+.++ ..++.++.++.-+ +++. +.+.+.+.++.++.+.|+.|+..
T Consensus 7 ~~d~~~~~~~-~~~~~~~~~~~e~e~~~r---~~l~~~l~kldlVtREEF-------d~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 7 IFDDLAKQIS-EALPAAQGPREEIEKNIR---ARLQSALSKLDLVTREEF-------DAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHH-HHHHhhhhhHHHHHHHHH---HHHHHHHHHCCCCcHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555 444444566677766554 3344445555422 2222 23334444444444445555544
Q ss_pred H
Q 003591 699 L 699 (808)
Q Consensus 699 L 699 (808)
|
T Consensus 76 L 76 (79)
T PF04380_consen 76 L 76 (79)
T ss_pred H
Confidence 3
No 486
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=47.69 E-value=3.9e+02 Score=28.72 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 003591 639 VHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEE-----RQSRLEERIDHAVQQHNILEQR 695 (808)
Q Consensus 639 v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~-----~~e~L~~Rie~a~~~Q~~L~~R 695 (808)
...++..|++.|...++.=...+.++.+++..+.. ....|...+++|+..-++|.+|
T Consensus 81 ~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 81 NTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666655555555555555554 2455555555555555555544
No 487
>PRK04406 hypothetical protein; Provisional
Probab=47.68 E-value=79 Score=27.71 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 003591 724 FEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENLKKVKLVESALKKQ 803 (808)
Q Consensus 724 ~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~ 803 (808)
|.+.....+..||+.|-.|+..+..- +..|-..+.++...|..+.++++.+-.-|+..
T Consensus 1 ~~~~~~~~le~Ri~~LE~~lAfQE~t----------------------Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 1 MTEKTIEQLEERINDLECQLAFQEQT----------------------IEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred ccc
Q 003591 804 ESS 806 (808)
Q Consensus 804 ~~~ 806 (808)
+.+
T Consensus 59 ~~~ 61 (75)
T PRK04406 59 DSS 61 (75)
T ss_pred ccc
No 488
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.65 E-value=3.5e+02 Score=34.89 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhc-CCCCCCCCCCH
Q 003591 641 FELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHN-------ILEQRLQHLRN-LPGAHKKPLSG 712 (808)
Q Consensus 641 ~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~-------~L~~R~~~L~~-l~~~~~~~LS~ 712 (808)
.++++.+...+...+.|-..+..++..+..+.+.-+.+.+.+++....+. ...+-|+.|+. ..+.....|.-
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ 385 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEV 385 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHH
Q ss_pred HHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhhhhHHHH
Q 003591 713 AEHALKAELDHFEG--VELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSLVNSENL 790 (808)
Q Consensus 713 aEk~~~~El~~~~~--~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~~i~e~~ 790 (808)
.++.++...+++.. ..-..+++++.+++..+++ .+.|...|-..+.+.+..-+|++
T Consensus 386 ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver----------------------~~~~~~~L~~~i~s~~~~~~e~~ 443 (1141)
T KOG0018|consen 386 LNRNMRSDQDTLDHELERRAELEARIKQLKESVER----------------------LDKRRNKLAAKITSLSRSYEELK 443 (1141)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHhhhcccCC
Q 003591 791 KKVKLVESALKKQESSRY 808 (808)
Q Consensus 791 ~k~~~~~~~~~~~~~~~~ 808 (808)
.-.+.+++.-.+-++--|
T Consensus 444 ~d~~~l~~~~~~~~~~~~ 461 (1141)
T KOG0018|consen 444 HDLDSLESLVSSAEEEPY 461 (1141)
T ss_pred hcHHHHHHHHhhhhhhHH
No 489
>smart00150 SPEC Spectrin repeats.
Probab=47.55 E-value=1.7e+02 Score=25.10 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 643 LKHHAPQLKQIIDDQHARLSEAQNKILKVEER----QSRLEERIDHAVQQHNILEQRLQH 698 (808)
Q Consensus 643 l~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~----~e~L~~Rie~a~~~Q~~L~~R~~~ 698 (808)
+.++.+.++.++.....++..+...-+.+... ...+..+++++..+-+.|.++++.
T Consensus 36 ~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~ 95 (101)
T smart00150 36 LLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEE 95 (101)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444444422 334555555555555555555444
No 490
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.50 E-value=6.3e+02 Score=31.15 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcC
Q 003591 713 AEHALKAELDHFEGVELDALHSSIEALRARLRRLTQS 749 (808)
Q Consensus 713 aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~ 749 (808)
.|+.+..-...+.. ..+...+.++++..++.-.++.
T Consensus 191 ~eke~~~~~~ql~~-~~q~~~~~~~~l~e~~~~~qq~ 226 (716)
T KOG4593|consen 191 EEKELDRQHKQLQE-ENQKIQELQASLEERADHEQQN 226 (716)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444332 4445555555565555443333
No 491
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=47.44 E-value=1.8e+02 Score=25.66 Aligned_cols=53 Identities=15% Similarity=0.353 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 642 ELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQ 694 (808)
Q Consensus 642 el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~ 694 (808)
.++..++..+..+.+-++++-+=.++++.+.++++.|.+.=+..+..=..+..
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r 59 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKR 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36667777777777777777777777777777776666555554444333333
No 492
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=47.31 E-value=4e+02 Score=29.15 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHH
Q 003591 728 ELDALHSSIEALRA 741 (808)
Q Consensus 728 ~l~~L~~~ie~lk~ 741 (808)
++...+..+++++.
T Consensus 154 ~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 154 ALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 493
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.30 E-value=67 Score=34.43 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003591 649 QLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNL 702 (808)
Q Consensus 649 ~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l 702 (808)
.|..+++.-.+++++++.++++++.+-.... .........|++|+++|+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~---~~~~t~~~~ie~~l~~l~~~ 104 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR---RSVLTDDAALEDRLEKLRML 104 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544333322 22226778888899999874
No 494
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=47.29 E-value=1.3e+02 Score=36.41 Aligned_cols=116 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCCceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEeecCCCcceeeeEEEeCCCCCEEEEEecC-
Q 003591 48 FNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRNGSALLLIGSD- 126 (808)
Q Consensus 48 ~~~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~~s~sG~~Lal~G~~- 126 (808)
+...+|++..|. |+.||.||=-. +.....-...-..-..|-|+.+ +||.|.||+--...
T Consensus 280 DssGt~L~AsCt-D~sIy~ynm~s------------------~s~sP~~~~sg~~~~sf~vks~-lSpd~~~l~SgSsd~ 339 (720)
T KOG0321|consen 280 DSSGTYLFASCT-DNSIYFYNMRS------------------LSISPVAEFSGKLNSSFYVKSE-LSPDDCSLLSGSSDE 339 (720)
T ss_pred cCCCCeEEEEec-CCcEEEEeccc------------------cCcCchhhccCcccceeeeeee-cCCCCceEeccCCCc
Q ss_pred eEEEEEeCCCCCCCCCCceeeEEEEecceeeeccCCccceeEEEEecCCCCEEEEEecCCeEEEEeccCCCCC
Q 003591 127 GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSSDSVFRLFNLASDVMQ 199 (808)
Q Consensus 127 ~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~ 199 (808)
...|=.+-..+.. .-..-.....|-.|.|-|...+-+++-..|+.+++|++..+..+
T Consensus 340 ~ayiw~vs~~e~~----------------~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 340 QAYIWVVSSPEAP----------------PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ceeeeeecCccCC----------------hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
No 495
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=47.19 E-value=3.9e+02 Score=30.44 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred ceEEEEeCCceEEEEeCCCcEEEEEeeccCCCCCCcccccCCceEee-----cCCCcceeee---EEEeCCCCCEEEEEe
Q 003591 53 KNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMR-----ADVKLNFEVS---RISINRNGSALLLIG 124 (808)
Q Consensus 53 rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~-----~~~~l~f~i~---~i~~s~sG~~Lal~G 124 (808)
++++....++.|.+||.+. ...+..+. ..+.+.+.-. -+.-|..|....+-+
T Consensus 203 Kr~~tgy~dgti~~Wn~kt--------------------g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKT--------------------GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred ceEEEEecCceEEEEecCC--------------------CceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Q ss_pred cCeEEEEEeCCCCCCC----------------------------CCCceeeEEEEecceeeeccCCccceeEEEEecCCC
Q 003591 125 SDGLCVMYLYGRTCSS----------------------------DNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSD 176 (808)
Q Consensus 125 ~~~v~Vv~LP~~~~~~----------------------------d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd 176 (808)
..+=+|....+..... |+.-+.--+-... .-++......|.+..|-+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~--t 338 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN--T 338 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC--c
Q ss_pred CEEEEEecCCeEEEEeccC--------CCCCCceEEEecc
Q 003591 177 THLGILSSDSVFRLFNLAS--------DVMQPEQEYYLQP 208 (808)
Q Consensus 177 ~~LvvLtsD~~ir~ydl~~--------~~~~p~q~~~l~~ 208 (808)
..|.+=+.|++||.||... +-..+.++|.+.+
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~ 378 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP 378 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEEEcC
No 496
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=47.16 E-value=2.9e+02 Score=30.71 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 621 LHQYFNLFQENYVEYAHKV------HFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQ 694 (808)
Q Consensus 621 L~~a~~~l~e~~~~~~~~v------~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~ 694 (808)
|++....=.+++...++.+ ..++++||+.+..|.......|...++.=..++..=..|.+||.++...-.+-.+
T Consensus 218 LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQE 297 (306)
T PF04849_consen 218 LSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQE 297 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhc
Q 003591 695 RLQHLRN 701 (808)
Q Consensus 695 R~~~L~~ 701 (808)
-+++||+
T Consensus 298 Elk~lR~ 304 (306)
T PF04849_consen 298 ELKTLRK 304 (306)
T ss_pred HHHHhhC
No 497
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=47.14 E-value=59 Score=36.47 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred eeEEEeCCCCCEEEEEecCeEEEEEeCCCCCCCCCCceeeEEEE----ecceeeeccCCccceeEEEEecCC-CCEEEEE
Q 003591 108 VSRISINRNGSALLLIGSDGLCVMYLYGRTCSSDNKTIICRTVS----VGSQIYFSSSNVIRTLQVSWHPYS-DTHLGIL 182 (808)
Q Consensus 108 i~~i~~s~sG~~Lal~G~~~v~Vv~LP~~~~~~d~~~~~c~t~~----v~~~~~~~~~~~~~I~qv~WHP~s-d~~LvvL 182 (808)
|..|..+.+|.+|| .|.++=.|+..-+.... .+ ..+-.+.- ..=.+...-.-.-.|.+++|++-+ ..+.++-
T Consensus 28 is~vef~~~Ge~La-tGdkgGRVv~f~r~~~~-~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 28 ISAVEFDHYGERLA-TGDKGGRVVLFEREKLY-KG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred eeeEEeecccceEe-ecCCCCeEEEeeccccc-cc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Q ss_pred ecCCeEEEEeccCCCCCCc
Q 003591 183 SSDSVFRLFNLASDVMQPE 201 (808)
Q Consensus 183 tsD~~ir~ydl~~~~~~p~ 201 (808)
|+|-+|++|-+.....+++
T Consensus 105 tNdktiKlWKi~er~~k~~ 123 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKE 123 (433)
T ss_pred cCCcceeeeeeeccccccc
No 498
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=47.11 E-value=3.6e+02 Score=28.19 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003591 623 QYFNLFQENYVEYAHKVHFELKHHAPQLKQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNL 702 (808)
Q Consensus 623 ~a~~~l~e~~~~~~~~v~~el~rR~~~L~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l 702 (808)
+.++.--+.|-+..+-+.+==-|++-.-..++ ..+..+++.+..+.+.|..++.+.+.+++.-..|-+..|..
T Consensus 156 DEIrMt~aAYqtlyeSsvAfGmRKALqae~ek-------~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~i 228 (259)
T KOG4001|consen 156 DEIRMTFAAYQTLYESSVAFGMRKALQAENEK-------TRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREI 228 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 003591 703 PGAHKKPLSGAEHALKAELDHFEGVELDALHSSIE 737 (808)
Q Consensus 703 ~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie 737 (808)
. ||+|.+|++.+.+ -=..|+++++
T Consensus 229 e----------Ekk~~eei~fLk~-tN~qLKaQLe 252 (259)
T KOG4001|consen 229 E----------EKKMKEEIEFLKE-TNRQLKAQLE 252 (259)
T ss_pred H----------HHHHHHHHHHHHH-HHHHHHHHHh
No 499
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=47.03 E-value=5.4e+02 Score=30.24 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH--HHHHHHHHhHH-HHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003591 618 RSTLHQYFNLFQENYVEYAH--KVHFELKHHAP-QLKQIIDDQ-HARLSEAQNK-ILKVEERQSRLEERIDHAVQQHNIL 692 (808)
Q Consensus 618 ~~~L~~a~~~l~e~~~~~~~--~v~~el~rR~~-~L~~e~~~Q-l~~L~~l~e~-i~~l~~~~e~L~~Rie~a~~~Q~~L 692 (808)
+..+.+-...+....-...+ .+...+---+. ..+.+.-++ ..++.+...+ +..+..-...+...+.+..++++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~eq~~~l 96 (448)
T COG1322 17 LAFIRQLLLRLGRLEQMLGELAAVLEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLL 96 (448)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhc-CCCCCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHH
Q 003591 693 EQRLQHLRN-LPGAHKKPLSGAEHALKAELDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQ 771 (808)
Q Consensus 693 ~~R~~~L~~-l~~~~~~~LS~aEk~~~~El~~~~~~~l~~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 771 (808)
.+...+++. +.+.........++.|.+-=+.....-+.-++..++.++.+++....+ +-.+
T Consensus 97 ~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~~~~~------------------s~~~ 158 (448)
T COG1322 97 IESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQRIHE------------------SAEE 158 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccC
Q 003591 772 ISQLRSLMEKLSLVNSENLKKVKLVESALKKQESSR 807 (808)
Q Consensus 772 ~~~l~~~L~~~~~~i~e~~~k~~~~~~~~~~~~~~~ 807 (808)
...+...+.+.-..|.-+.+.+..+..+||+ -.+|
T Consensus 159 ~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~-~ktr 193 (448)
T COG1322 159 RSTLLEEIDRLLGEIQQLAQEAGNLTAALKG-NKTR 193 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcc
No 500
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=46.89 E-value=1.4e+02 Score=32.39 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhhhhhhhHH
Q 003591 651 KQIIDDQHARLSEAQNKILKVEERQSRLEERIDHAVQQHNILEQRLQHLRNLPGAHKKPLSGAEHALKAELDHFEGVELD 730 (808)
Q Consensus 651 ~~e~~~Ql~~L~~l~e~i~~l~~~~e~L~~Rie~a~~~Q~~L~~R~~~L~~l~~~~~~~LS~aEk~~~~El~~~~~~~l~ 730 (808)
...+++|+++ +++..+...++.-..|.++|.++|..-.+.-..+-.+.+++.+.-.- |-.+-|.+.+.+.+..
T Consensus 321 ~e~kkrqler-----qekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egv--kllkf~fekieareer 393 (445)
T KOG2891|consen 321 AEIKKRQLER-----QEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGV--KLLKFEFEKIEAREER 393 (445)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCccccccCcccCcHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q 003591 731 ALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLMEKLSL-VNSENLKKVK 794 (808)
Q Consensus 731 ~L~~~ie~lk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~L~~~~~-~i~e~~~k~~ 794 (808)
.-+...|.|++-.+++++-..+. ....-+.++..|..++. +|.+++.|.|
T Consensus 394 rkqkeeeklk~e~qkikeleek~--------------~eeedal~~all~~qeirl~~~lkek~k 444 (445)
T KOG2891|consen 394 RKQKEEEKLKAEEQKIKELEEKI--------------KEEEDALLLALLNLQEIRLIAELKEKAK 444 (445)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhHHHHHHHHHHHhhc
Done!