Query 003591
Match_columns 808
No_of_seqs 177 out of 197
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 17:31:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003591.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1642-1646//hhsearch_pdb/003591hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pbp_A Nucleoporin NUP82; beta 1.0 1 1 485.1 34.2 375 28-496 6-395 (452)
2 2xyi_A Probable histone-bindin 1.0 1 1 40.3 19.1 129 105-250 128-259 (430)
3 1i84_S Smooth muscle myosin he 1.0 1 1 38.1 12.0 53 440-492 533-598 (1184)
4 2oit_A Nucleoporin 214KDA; NH2 1.0 1 1 36.3 18.3 194 22-252 15-221 (434)
5 3jro_A Fusion protein of prote 1.0 1 1 36.2 18.3 152 52-250 21-185 (753)
6 4e54_B DNA damage-binding prot 1.0 1 1 36.1 15.6 117 105-251 119-237 (435)
7 3mkq_A Coatomer beta'-subunit; 1.0 1 1 35.8 17.9 74 106-195 98-172 (814)
8 3jrp_A Fusion protein of prote 1.0 1 1 35.1 19.6 151 52-249 23-186 (379)
9 1i84_S Smooth muscle myosin he 1.0 1 1 34.9 11.1 16 505-520 674-689 (1184)
10 2aq5_A Coronin-1A; WD40 repeat 1.0 1 1 34.3 18.5 122 105-252 81-205 (402)
No 1
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=1.00 E-value=1 Score=485.06 Aligned_cols=375 Identities=16% Similarity=0.193 Sum_probs=293.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCE-
Q ss_conf 2899975444533349999878987107999499659999599817999841038999886334688137522777640-
Q 003591 28 PLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNF- 106 (808)
Q Consensus 28 ~L~~hpiF~~~~~~~~~~~~~~~~~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f- 106 (808)
.|..-|||+.... +. ...|.+++|+||++||++.+|. +||++..+ ...||+|+....+.|
T Consensus 6 ~~~~~pif~~~~~-----~~--~s~R~~~~~~n~t~i~~a~~n~-------iR~~~i~~-----~~~Yk~L~~~~~i~f~ 66 (452)
T 3pbp_A 6 RLSALPIFQASLS-----AS--QSPRYIFSSQNGTRIVFIQDNI-------IRWYNVLT-----DSLYHSLNFSRHLVLD 66 (452)
T ss_dssp -CCCCTTTCC-------------CCEEEEEETTTTEEEEEETTE-------EEEEETTT-----CSSCEEEECTTTCCCC
T ss_pred CEEEEEECCCCCC-----CC--CCCCEEEEECCCCEEEEEECCE-------EEEEECCC-----CCCCEEEECCCCCCCC
T ss_conf 3145320145434-----57--7885799982897899997999-------99977788-----8860587367656667
Q ss_pred EEEEEEECCCCCEEEEEECCEEEEEEEC-CCCCCCC-C--CCEEEEEEEECCEEEECCCCCCCEEEEEEECCC--CCEEE
Q ss_conf 1328996889998999925839999969-9888899-9--840467998425134315886433699985389--97799
Q 003591 107 EVSRISINRNGSALLLIGSDGLCVMYLY-GRTCSSD-N--KTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS--DTHLG 180 (808)
Q Consensus 107 ~i~~i~is~sG~~Lal~G~~~v~Vv~LP-~~~~~~d-~--~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s--d~~Lv 180 (808)
+|+|+++||+|+||||+|+|+|+|++|| +++...+ + +++.|++|++++. ...++++|+||+|||+| |+|||
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~---~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE---EVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC---C--CCCCEEEEEECTTBGGGCEEE
T ss_pred CEEEEEECCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCC---CCCCCCCEEEEEECCCCCCCCEEE
T ss_conf 53499999999879996498699999258424676655565321469973774---557878666999443667898699
Q ss_pred EEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEE--CCCCEEEECCCCCCCC
Q ss_conf 99149828998635899987358980337999889989853078870379999716999990--4862999755578989
Q 003591 181 ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLF--SDGSIYILCPVVPFGS 258 (808)
Q Consensus 181 vLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~TLyiL~--~~GdIYalcP~lP~~~ 258 (808)
|||+||+||+||++++.++|. .|+....+++.+...++++|||||+ ++||||+|| ++|||||||||+|.+|
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~---~L~k~~~~fg~d~~~~ev~S~~Fg~----~~lTLYvl~~t~~GDIYAlcP~LP~~~ 216 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPI---VLNKPNNSFGLDARVNDITDLEFSK----DGLTLYCLNTTEGGDIFAFYPFLPSVL 216 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCE---EESCCCSEEESCSSCCCEEEEEECT----TSSCEEEEECTTSCEEEEESSCCCSEE
T ss_pred EEECCCEEEEEECCCCCCCCC---CHHCCCCCCCCCCCCCEEEEEEECC----CCCEEEEEECCCCCCEEEECCCCCCCC
T ss_conf 994698799997136777771---1102465458873434478999769----984899980588987899887775001
Q ss_pred CCCHHHHHHHHHHHHHHHH--CCCCH-HHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 7685579999866534100--02342-43202189999988626322124567899984002468766886410287020
Q 003591 259 VYKWESILEIYNDAQTFGL--RSVNS-LAVRNSSLAISWLEATFPEVAQETIDEGDPPALKAHPHALFDSSVSLQGPLRK 335 (808)
Q Consensus 259 ~~~~~~i~~L~~~~~~~~~--~~~~~-~~~~ns~~q~~Wl~~~~~~~~~~~~~~~~~~~v~~~p~~~~~~~~~lQGPf~~ 335 (808)
+++++.|++|++++.+.+. +.+.+ ....++.+|++|++++..|...+ +. .+ ....+.+.+++||||.|
T Consensus 217 ~~~~s~i~~L~~ks~~~~~~l~~~~~~~~k~~~~qQl~~~s~L~~q~~~~----~~--~~---~i~~~~r~~~~qgpf~i 287 (452)
T 3pbp_A 217 LLNEKDLNLILNKSLVMYESLDSTTDVIVKRNVIKQLQFVSKLHENWNSR----FG--KV---DIQKEYRLAKVQGPFTI 287 (452)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHHHHHHHHHCBTT----TT--EE---ECCGGGGCCCCBCCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CC--CC---CCCHHHHCCCCCCCEEC
T ss_conf 66989999999999999875313688899999999999999998878723----78--60---57158733424686103
Q ss_pred CCCCCCCCHHHHCCCCCCCCCEEEEEEECC--CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 599999811221024455751048984027--981899993484689972137787522458999731265332234320
Q 003591 336 ICHGGEDESLAVRGAECEGRAVSFLYNLVS--KDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAM 413 (808)
Q Consensus 336 ~~~~~~d~y~~~~~~~~~~~a~~il~~~~~--~~~il~ia~~~G~v~i~l~~~ev~~~W~~~~~~~l~v~~~~~~~~~~~ 413 (808)
+| +++++|+ .+||+|.+++++ .++++|++|++|+|++|+.++|+.|+|+.++-..- ...+
T Consensus 288 ~P-~P~elY~--------~~A~~i~~lpi~~~~~~ll~i~f~dG~v~~l~~d~e~~msW~~~~~~~~---------nSl~ 349 (452)
T 3pbp_A 288 NP-FPGELYD--------YTATNIATILIDNGQNEIVCVSFDDGSLILLFKDLEMSMSWDVDNYVYN---------NSLV 349 (452)
T ss_dssp ET-CCSGGGG--------SCEEEEEEEECSSSSCEEEEEEETTTEEEEEEECSCCCCCSSCTTBCSS---------CEEE
T ss_pred CC-CCHHHCC--------CCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCEEECCCCCCC---------CEEE
T ss_conf 78-8536530--------2213358995167885099999639879998227763321505677777---------7179
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEE-ECCCCC
Q ss_conf 0023368998422479887544579999852000001369999899970189738899924999976870599-912421
Q 003591 414 ICEPISGELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHDGGIDSV-VLHFLP 492 (808)
Q Consensus 414 i~E~i~~el~~~~~~~~~~~~~~~~~~p~Ll~l~~vdl~~p~~~~~~~~~~l~~D~~~~~r~~v~H~~GVh~V-sL~Wv~ 492 (808)
+.|+++++. + .-..++.| ....+|||+|..|||.| .+.|..
T Consensus 350 lvE~i~l~~---------------------------------~----~~~~~~~~-~~~g~~~v~~~~~v~~vd~~~W~~ 391 (452)
T 3pbp_A 350 LIERVKLQR---------------------------------E----IKSLITLP-EQLGKLYVISDNIIQQVNFMSWAS 391 (452)
T ss_dssp EEEEEECCS---------------------------------C----CCEEECCT-TSTTEEEEECSSEEEEEECHHHHH
T ss_pred EEEEEECCC---------------------------------C----HHHEEECC-CCCCEEEEEECCCEEEEECCCHHH
T ss_conf 999997260---------------------------------0----13206237-877559996257537996250899
Q ss_pred CCCC
Q ss_conf 2123
Q 003591 493 FTSQ 496 (808)
Q Consensus 493 ~Le~ 496 (808)
.|++
T Consensus 392 ~L~~ 395 (452)
T 3pbp_A 392 TLSK 395 (452)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 2
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=1.00 E-value=1 Score=40.32 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=72.9
Q ss_pred CEEEEEEEECCC-CCEEEEEECC-EEEEEEECCCCCCCC-CCCEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 401328996889-9989999258-399999699888899-9840467998425134315886433699985389977999
Q 003591 105 NFEVSRISINRN-GSALLLIGSD-GLCVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGI 181 (808)
Q Consensus 105 ~f~i~~i~is~s-G~~Lal~G~~-~v~Vv~LP~~~~~~d-~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~Lvv 181 (808)
...|..+..+|. ++++|..+.. .|.|..+........ .....+ ... .......|..+.|+|.+...|++
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~-~~~-------~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQP-DLR-------LRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCC-SEE-------EECCSSCCCCEEECTTSTTEEEE
T ss_pred CCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCC-CEE-------ECCCCCCEEEEEECCCCCCEEEE
T ss_conf 9937789977899968999879982999977776345675556787-679-------33899985998868988975999
Q ss_pred EECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 914982899863589998735898033799988998985307887037999971699999048629997
Q 003591 182 LSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYIL 250 (808)
Q Consensus 182 LtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~TLyiL~~~GdIYal 250 (808)
-..|+.|++|++...... ...+... ..+......+.+++|.+.+ ..-++....+|.|+..
T Consensus 200 ~~~dg~i~vwd~~~~~~~-~~~~~~~-----~~~~~h~~~v~~v~~~p~~---~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKE-HRVIDAK-----NIFTGHTAVVEDVAWHLLH---ESLFGSVADDQKLMIW 259 (430)
T ss_dssp ECTTSCEEEEETTSCCBG-GGEEECS-----EEECCCSSCEEEEEECSSC---TTEEEEEETTSEEEEE
T ss_pred EECCCEEEEEECCCCCCC-CCEECCC-----EEECCCCCCEEEEEEECCC---CCEEEEEECCCEEEEE
T ss_conf 959980999969987788-8443565-----0242789878623880799---9989999489969999
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=38.08 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=29.0
Q ss_pred CCCCCCHHHHCCCCCCCCC----------CCCEEEEEECCC--CCCEEEEEECCC-CEEEECCCCC
Q ss_conf 9985200000136999989----------997018973889--992499997687-0599912421
Q 003591 440 PPPLLRLATVDLALPKNTE----------SGSIITMSIDPL--MQERIYIVHDGG-IDSVVLHFLP 492 (808)
Q Consensus 440 ~p~Ll~l~~vdl~~p~~~~----------~~~~~~l~~D~~--~~~r~~v~H~~G-Vh~VsL~Wv~ 492 (808)
|+.++.+--.+-.+|+..+ .+..+.|..... .+..|-+.|-+| |.|=.-.|+.
T Consensus 533 ~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl~ 598 (1184)
T 1i84_S 533 PPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLT 598 (1184)
T ss_dssp SCCHHHHHHHTTSCTTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHHH
T ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCHH
T ss_conf 997212204651899997699999999973789781579878899927998897469862688134
No 4
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=1.00 E-value=1 Score=36.35 Aligned_cols=194 Identities=8% Similarity=0.133 Sum_probs=103.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCEEEEEECCCCEEEEEEEC---CCCCCCCCCCCCCCCEE
Q ss_conf 553321289997544453334999987898710799949-96599995998179998410---38999886334688137
Q 003591 22 EEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG-ASRLYYWDQNAQCLHRISVR---LGEPDPTSILAAFPSKV 97 (808)
Q Consensus 22 ~~~~w~~L~~hpiF~~~~~~~~~~~~~~~~~rnll~~~~-~~~l~~w~~~~~~l~~~~lR---~~~~~~~~~~~~~~yk~ 97 (808)
++..|..+.+-.+|..... .+ ...-|++++.. ++.+++...+. +.+.+.. ........ ......
T Consensus 15 ~~~~F~~~~~vri~~~~~~----~~---~~~~n~lavs~~~~~l~~~~~dg--v~v~~~~~~~~~~~~~~~---~~~~~~ 82 (434)
T 2oit_A 15 KDFQFRALKKVRIFDSPEE----LP---KERSSLLAVSNKYGLVFAGGASG--LQIFPTKNLLIQNKPGDD---PNKIVD 82 (434)
T ss_dssp SSEEEEECCEEECSCCCSS----CC---CSCCBCEEEETTTTEEEEEETTE--EEEEEHHHHCCCCCTTCC---TTCEEE
T ss_pred CCCEEEEEEEEEECCCCCC----CC---CCCCCEEEEECCCCEEEEECCCE--EEEEECHHHHHHCCCCCC---CCCCCC
T ss_conf 6202424236985477334----67---88755899966788799978997--999983675320124557---551133
Q ss_pred EEC--CCCCCEEEEEEEECCCCCEEEE---EEC--CEEEEEEECCCC-CCC-CCCCEEEEEEEECCEEEECCCCCCCEEE
Q ss_conf 522--7776401328996889998999---925--839999969988-889-9984046799842513431588643369
Q 003591 98 MRA--DVKLNFEVSRISINRNGSALLL---IGS--DGLCVMYLYGRT-CSS-DNKTIICRTVSVGSQIYFSSSNVIRTLQ 168 (808)
Q Consensus 98 L~~--~~~l~f~i~~i~is~sG~~Lal---~G~--~~v~Vv~LP~~~-~~~-d~~~~~c~t~~v~~~~~~~~~~~~~I~q 168 (808)
..+ ..++...|..+..||+|++||+ .|. ..|.|-.+.... +.. ....+ ..+.+ ...+...|..
T Consensus 83 ~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~------~~~h~~~V~~ 154 (434)
T 2oit_A 83 KVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPF--AYHKL------LKDAGGMVID 154 (434)
T ss_dssp CCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCS--EEEEC------CCSGGGSEEE
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEE--EEEEC------CCCCCCCEEE
T ss_conf 686525268886037997589997999971357996699998033346776776403--56631------4788875689
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEE
Q ss_conf 99853899779999149828998635899987358980337999889989853078870379999716999990486299
Q 003591 169 VSWHPYSDTHLGILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIY 248 (808)
Q Consensus 169 v~WHP~sd~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~TLyiL~~~GdIY 248 (808)
+.|||..+..|++-..|++|++||+... ...+... + ....+.+++|.+. .-.|++...+|.|+
T Consensus 155 v~~~p~~~~~las~s~Dg~v~iwD~~~~----~~~~~~~----~-----~~~~v~~v~wspd----g~~lasgs~dg~v~ 217 (434)
T 2oit_A 155 MKWNPTVPSMVAVCLADGSIAVLQVTET----VKVCATL----P-----STVAVTSVCWSPK----GKQLAVGKQNGTVV 217 (434)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEEESSS----EEEEEEE----C-----GGGCEEEEEECTT----SSCEEEEETTSCEE
T ss_pred EEECCCCCCEEEEEECCCEEEEEECCCC----CCEEECC----C-----CCCCEEEEEECCC----CCEEEEECCCCCEE
T ss_conf 9978999987999979992999885788----5225416----8-----7786248997688----99899974899489
Q ss_pred EECC
Q ss_conf 9755
Q 003591 249 ILCP 252 (808)
Q Consensus 249 alcP 252 (808)
..-+
T Consensus 218 iwd~ 221 (434)
T 2oit_A 218 QYLP 221 (434)
T ss_dssp EECT
T ss_pred EECC
T ss_conf 9766
No 5
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=36.23 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=85.2
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCC--CCEEEEEECC-EE
Q ss_conf 71079994996599995998179998410389998863346881375227776401328996889--9989999258-39
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRN--GSALLLIGSD-GL 128 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~is~s--G~~Lal~G~~-~v 128 (808)
.+.++++..++.+.+|+-.... ....+.+. .. ...|..+..+++ |++++..+.. .|
T Consensus 21 g~~latg~~dg~I~vwd~~~~~------------------~~~~~~l~--~h-~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEGET------------------HKLIDTLT--GH-EGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp SCCEEEEETTTEEEEEEEETTE------------------EEEEEEEC--CC-SSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred CCEEEEEECCCCEEEEECCCCC------------------CCCCEECC--CC-CCCEEEEEECCCCCCCEEEEEECCCEE
T ss_conf 9869999779948998647997------------------74224503--77-675679995588899879998289838
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf 99996998888999840467998425134315886433699985389-97799991498289986358999873589803
Q 003591 129 CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQ 207 (808)
Q Consensus 129 ~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s-d~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~ 207 (808)
.|-.+... . +..... + ......|..+.|+|.. +..+++-+.|+.|++||+..........+.-+
T Consensus 80 ~vwd~~~~-------~--~~~~~~----~--~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 80 LIWKEENG-------R--WSQIAV----H--AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp EEEEEETT-------E--EEEEEE----E--CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred EEEECCCC-------C--CCCCCC----C--CCCCCCEEEEEECCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECC
T ss_conf 99989999-------6--410024----4--6888772799978999998799996898189998304887420675257
Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-----CCC----CCEEEEEEECCCCEEEE
Q ss_conf 37999889989853078870379-----999----71699999048629997
Q 003591 208 PVEPGRYRNAASICPVDFSFGGD-----HLW----DRFSVFVLFSDGSIYIL 250 (808)
Q Consensus 208 ~~~~g~~~~~~~~~~vsf~Fg~~-----~~w----~~~TLyiL~~~GdIYal 250 (808)
...+.+++|.+. ..+ +.-.++....+|.|+..
T Consensus 145 -----------~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iw 185 (753)
T 3jro_A 145 -----------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185 (753)
T ss_dssp -----------SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEE
T ss_pred -----------CCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEE
T ss_conf -----------78668999357666543334568898779999779748999
No 6
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=1.00 E-value=1 Score=36.14 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=68.5
Q ss_pred CEEEEEEEECCC-CCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 401328996889-9989999258-39999969988889998404679984251343158864336999853899779999
Q 003591 105 NFEVSRISINRN-GSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGIL 182 (808)
Q Consensus 105 ~f~i~~i~is~s-G~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvL 182 (808)
+..|..|..+|+ +++||.-+.. .|.|-.+... + ..+ .+. ...+...|..+.|+|..+..|+.-
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~----~---~~~-~~~-------~~gH~~~V~~l~f~p~~~~~l~s~ 183 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK----D---KPT-FIK-------GIGAGGSITGLKFNPLNTNQFYAS 183 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC----S---CCE-EEC-------CCSSSCCCCEEEECSSCTTEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC----C---CEE-EEE-------CCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 9989999991899999999918897999979899----7---136-897-------368999888999907999999999
Q ss_pred ECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEC
Q ss_conf 149828998635899987358980337999889989853078870379999716999990486299975
Q 003591 183 SSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILC 251 (808)
Q Consensus 183 tsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~TLyiL~~~GdIYalc 251 (808)
..|++||+||+... ..+.+. . +. .....+.+++|.+. .-.|+....+|.|+..-
T Consensus 184 s~D~~v~iwd~~~~---~~~~~~-~----~~---~~~~~~~~~~~~~~----~~~l~~g~~dg~i~~wd 237 (435)
T 4e54_B 184 SMEGTTRLQDFKGN---ILRVFA-S----SD---TINIWFCSLDVSAS----SRMVVTGDNVGNVILLN 237 (435)
T ss_dssp CSSSCEEEEETTSC---EEEEEE-C----CS---SCSCCCCCEEEETT----TTEEEEECSSSBEEEEE
T ss_pred ECCCEEEEEECCCC---CEEEEE-C----CC---CCCCCEEEEEECCC----CCEEEEEECCCCEEEEC
T ss_conf 58997999645677---225886-1----67---77753799998999----99999995899676632
No 7
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=35.80 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=38.8
Q ss_pred EEEEEEEECCCCCEEEEEECC-EEEEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 013289968899989999258-3999996998888999840467998425134315886433699985389977999914
Q 003591 106 FEVSRISINRNGSALLLIGSD-GLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGILSS 184 (808)
Q Consensus 106 f~i~~i~is~sG~~Lal~G~~-~v~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~LvvLts 184 (808)
..|..+..||+|.+|+..+.. .|.|-.+...+. +. . .+ ......|..+.|+|..+..|++-+.
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--------~~--~----~~--~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--------LE--Q----TF--EGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE--------EE--E----EE--ECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCEEEEEEECCCCEEEEECCCCEEEEEECCCCCE--------EE--E----EE--CCCCCCEEEEEEECCCCCEEEEEEC
T ss_conf 9789999958999899992899899998999954--------87--9----98--3799868899997699999999948
Q ss_pred CCEEEEEECCC
Q ss_conf 98289986358
Q 003591 185 DSVFRLFNLAS 195 (808)
Q Consensus 185 D~~ir~ydl~~ 195 (808)
|+.|++||+..
T Consensus 162 dg~v~vwd~~~ 172 (814)
T 3mkq_A 162 DRTVKVWSLGQ 172 (814)
T ss_dssp TSEEEEEETTC
T ss_pred CCEEEEEECCC
T ss_conf 89499998999
No 8
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=35.14 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=80.9
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCC--CCEEEEEECC-EE
Q ss_conf 71079994996599995998179998410389998863346881375227776401328996889--9989999258-39
Q 003591 52 PKNLVAWDGASRLYYWDQNAQCLHRISVRLGEPDPTSILAAFPSKVMRADVKLNFEVSRISINRN--GSALLLIGSD-GL 128 (808)
Q Consensus 52 ~rnll~~~~~~~l~~w~~~~~~l~~~~lR~~~~~~~~~~~~~~yk~L~~~~~l~f~i~~i~is~s--G~~Lal~G~~-~v 128 (808)
.+.++++..++.+.+|+-.... ....+.+. .. ...|..+..+++ |++|+..+.. .|
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~------------------~~~~~~~~--~h-~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGET------------------HKLIDTLT--GH-EGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETTE------------------EEEEEEEC--CC-SSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CCEEEEEECCCCEEEEECCCCC------------------CEEEEEEC--CC-CCCEEEEEECCCCCCCEEEEECCCCEE
T ss_conf 9989999799818998558986------------------53636852--77-874799996899899989996369979
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCEEEEEC
Q ss_conf 99996998888999840467998425134315886433699985389-97799991498289986358999873589803
Q 003591 129 CVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYS-DTHLGILSSDSVFRLFNLASDVMQPEQEYYLQ 207 (808)
Q Consensus 129 ~Vv~LP~~~~~~d~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~s-d~~LvvLtsD~~ir~ydl~~~~~~p~q~~~l~ 207 (808)
.|-.+... . +..... .......|..+.|+|.. +..|++-+.|+.|++||+..........+ .
T Consensus 82 ~iwd~~~~-------~--~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~ 144 (379)
T 3jrp_A 82 LIWKEENG-------R--WSQIAV------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII--D 144 (379)
T ss_dssp EEEEEETT-------E--EEEEEE------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE--E
T ss_pred EEEECCCC-------C--EEEEEE------ECCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEECCCCCCEEEEEE--C
T ss_conf 99776899-------6--457665------05887625799968888788899963898089984579985635896--1
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCC---------CCCEEEEEEECCCCEEE
Q ss_conf 3799988998985307887037999---------97169999904862999
Q 003591 208 PVEPGRYRNAASICPVDFSFGGDHL---------WDRFSVFVLFSDGSIYI 249 (808)
Q Consensus 208 ~~~~g~~~~~~~~~~vsf~Fg~~~~---------w~~~TLyiL~~~GdIYa 249 (808)
. ....+.+++|.+... -+.-.++....+|.|+.
T Consensus 145 ~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 186 (379)
T 3jrp_A 145 A---------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 186 (379)
T ss_dssp C---------CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEE
T ss_pred C---------CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
T ss_conf 7---------78856799975865553222357888878999957876999
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=34.93 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=7.6
Q ss_pred CCCCEEEEEECCCCCC
Q ss_conf 8982227772578999
Q 003591 505 RSPSVHPVLNTCQGET 520 (808)
Q Consensus 505 ~~~sv~~il~t~~~~~ 520 (808)
..+..+.|-|-.|.+.
T Consensus 674 ~~t~phfvRCIkPN~~ 689 (1184)
T 1i84_S 674 RNTNPNFVRCIIPNHE 689 (1184)
T ss_dssp TTSEEEECCEECCCSS
T ss_pred HHCCCCCEEEECCCCC
T ss_conf 8369886156577886
No 10
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=1.00 E-value=1 Score=34.29 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=78.1
Q ss_pred CEEEEEEEECC-CCCEEEEEECC-EEEEEEECCCCCCCC-CCCEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCEEEE
Q ss_conf 40132899688-99989999258-399999699888899-9840467998425134315886433699985389977999
Q 003591 105 NFEVSRISINR-NGSALLLIGSD-GLCVMYLYGRTCSSD-NKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLGI 181 (808)
Q Consensus 105 ~f~i~~i~is~-sG~~Lal~G~~-~v~Vv~LP~~~~~~d-~~~~~c~t~~v~~~~~~~~~~~~~I~qv~WHP~sd~~Lvv 181 (808)
...|..+..+| +|++|+..+.. .|.|-.++....... ...+ ..+ ......|..+.|||.+...|++
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~--~~~---------~~h~~~v~~~~~~p~~~~~l~s 149 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV--ITL---------EGHTKRVGIVAWHPTAQNVLLS 149 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCS--EEE---------ECCSSCEEEEEECSSBTTEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCE--EEE---------CCCCCEEEEEEECCCCCCEEEE
T ss_conf 99787899688999989999499829999726999765457731--895---------4888708999978289988999
Q ss_pred EECCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCEEEECC
Q ss_conf 91498289986358999873589803379998899898530788703799997169999904862999755
Q 003591 182 LSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFVLFSDGSIYILCP 252 (808)
Q Consensus 182 LtsD~~ir~ydl~~~~~~p~q~~~l~~~~~g~~~~~~~~~~vsf~Fg~~~~w~~~TLyiL~~~GdIYalcP 252 (808)
-..|+.|++||+... .....+.. ......+.+++|.+.+ -.|+....+|.|+..-+
T Consensus 150 ~~~dg~i~iwd~~~~----~~~~~~~~-------~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 150 AGCDNVILVWDVGTG----AAVLTLGP-------DVHPDTIYSVDWSRDG----ALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EETTSCEEEEETTTT----EEEEEECT-------TTCCSCEEEEEECTTS----SCEEEEETTSEEEEEET
T ss_pred ECCCCEEEEEECCCC----CCCEEEEC-------CCCCCCEEEEEECCCC----CEEEEEECCCCEEEEEC
T ss_conf 728998999989999----70079705-------7889844898987899----98999806996799968
Done!