Your job contains 1 sequence.
>003592
MEFDLNHAATTEGEKIAFCNGDCGKNNSGCVCYLNSSSSSSSCSANSSSSSSLSSSIYFE
LWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQLL
ANKENDEVYTQVALLPQPELEGLNLEAKQLEDLGVDEEGGGRSPTKSTPHMFCKTLTASD
TSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTG
WSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVAN
AVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVV
TGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPRMKKL
RTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHPLGFEMR
APAHQSLALNGIRKDNINELVRALPTSYTGFVESNRFPKVLQGQEICPLRSLTGKVDLNL
GTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRE
NVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFNGTAAGCKLF
GFSLTSETPTPSSQSPGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLL
RDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLD
QAPVIMEVSVSKSSSVSQPDSSPTVVRV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003592
(808 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 1759 1.2e-232 2
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 999 9.2e-133 3
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 1162 2.8e-125 3
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 915 1.4e-120 2
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 871 7.3e-117 3
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 924 6.1e-114 2
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 913 1.1e-112 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 857 1.0e-111 2
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 872 9.0e-111 2
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 879 2.4e-108 2
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 848 5.0e-108 2
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 576 3.9e-102 3
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 738 1.4e-97 2
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 715 2.6e-95 3
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 719 7.8e-95 2
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 722 5.4e-94 2
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 529 9.7e-88 3
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 526 8.0e-77 3
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 494 5.4e-75 3
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 379 5.4e-40 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 430 9.6e-40 1
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 166 2.5e-09 1
TAIR|locus:2098023 - symbol:IAA30 "indole-3-acetic acid i... 146 4.1e-09 1
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 165 6.7e-09 2
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 163 6.9e-09 1
TAIR|locus:2041324 - symbol:IAA20 "indole-3-acetic acid i... 140 1.8e-08 1
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 157 3.5e-08 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 155 5.4e-08 1
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 153 6.6e-08 1
TAIR|locus:2090527 - symbol:IAA31 "indole-3-acetic acid i... 129 2.7e-07 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 144 3.2e-07 1
TAIR|locus:2012438 - symbol:RAV2 "related to ABI3/VP1 2" ... 147 4.8e-07 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 143 7.5e-07 1
TAIR|locus:2180557 - symbol:IAA28 "AT5G25890" species:370... 123 1.1e-06 2
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 142 1.8e-06 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 126 5.4e-05 1
UNIPROTKB|Q5VRR0 - symbol:IAA20 "Auxin-responsive protein... 116 5.5e-05 2
TAIR|locus:2116592 - symbol:HSL1 "HSI2-like 1" species:37... 128 0.00021 1
UNIPROTKB|Q6K846 - symbol:IAA9 "Auxin-responsive protein ... 115 0.00022 1
TAIR|locus:2197838 - symbol:IAA12 "indole-3-acetic acid i... 116 0.00033 2
TAIR|locus:2170862 - symbol:ATAUX2-11 "AT5G43700" species... 112 0.00060 1
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 1759 (624.3 bits), Expect = 1.2e-232, Sum P(2) = 1.2e-232
Identities = 366/618 (59%), Positives = 423/618 (68%)
Query: 1 MEFDLN-HAATTEGEK---IAFCNGDCGKNNSGCVCYL-NXXXXXXXXXXXXXXXXXXXX 55
MEFDLN A E E+ + G + + G + +
Sbjct: 1 MEFDLNTEIAEVEEEENDDVGVGVGGGTRIDKGRLGISPSSSSSCSSGSSSSSSSTGSAS 60
Query: 56 XIYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVV 115
IY ELWHACAGPLT LPKKGNVVVYFPQGHLEQ A S P+E+P FDL PQI C+VV
Sbjct: 61 SIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVV 120
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+VQLLANK+ DEVYTQV LLP E LN E K+ S K TPHMFCKT
Sbjct: 121 NVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKT 180
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTSTHGGFSVPRRAAEDCF PLDYKQQRPSQEL+AKDLHGVEW+FRHIYRGQPRRH
Sbjct: 181 LTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRH 240
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LLTTGWSIFVSQKNLVSGDAVLFLR + GELRLGIRR+ +PRNGLPDSI+ K NS N+L
Sbjct: 241 LLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEK-NSCSNIL 299
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
S+VANAVSTKSMFHVFYSPRATHA+FVIPY+KY+ I +P+CIGTRF+MRFEMDDSPERR
Sbjct: 300 SLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERR 359
Query: 356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP 415
C GVVTG+ DLDPYRWPNSKWRCL+VRWDE SDHQE+VSPWEID SVSLP LSIQSSP
Sbjct: 360 CAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSP 419
Query: 416 RMKKLRTGL-QAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHP 474
R K+ GL PP P++ RGG LDFEESVR SKVLQGQEN+G SP G D +N
Sbjct: 420 RPKRPWAGLLDTTPPGNPITKRGG-FLDFEESVRPSKVLQGQENIGSASPSQGFDVMNRR 478
Query: 475 -LGFEMRAPAHQSLALNGIRKDNINELVRA--LPTSYTGFVESNRFPKVLQGQEICPLRS 531
L F M++ A+ L + + KD E V A + + +G ++ +RFP+VLQGQEIC L+S
Sbjct: 479 ILDFAMQSHANPVLVSSRV-KDRFGEFVDATGVNPACSGVMDLDRFPRVLQGQEICSLKS 537
Query: 532 LTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMP 591
+ P F YQA+K + YP + + PY + + P
Sbjct: 538 FPQFAGFSPAAAPNP-FA------YQANKSSYYPLALHGIRSTHVPYQNPYNAGNQSSGP 590
Query: 592 PY-ASNLQRENVKLNSSS 608
P A N E K ++ +
Sbjct: 591 PSRAINFGEETRKFDAQN 608
Score = 508 (183.9 bits), Expect = 1.2e-232, Sum P(2) = 1.2e-232
Identities = 118/235 (50%), Positives = 139/235 (59%)
Query: 556 YQASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIG 615
YQA+K + YP + + PY + PY + Q S +I G
Sbjct: 555 YQANKSSYYPLALHGIRSTHVPYQN-----------PYNAGNQSSGPP--SRAINF---G 598
Query: 616 AEIRKANLLNEHKPVENIPTPT-FKANMRSHKDGS-FNGTAA-GCKLFGFXXXXXXXXXX 672
E RK + NE N+ FK +M + GS N A+ GCKLFGF
Sbjct: 599 EETRKFDAQNEGGLPNNVTADLPFKIDMMGKQKGSELNMNASSGCKLFGFSLPVETPASK 658
Query: 673 XXXXGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYT 732
KR CTKVHKQGS VGRAIDL RLNGY+DLL ELE LFNMEGLLRDP KGWRILYT
Sbjct: 659 PQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYT 718
Query: 733 DSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGTTDDTQSCLDQAPVIME 787
DSEND+MVVGDDPWH+FCN V KIH+YT+EEVE DD +SCL+QA ++ME
Sbjct: 719 DSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVEN----ANDDNKSCLEQAALMME 769
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 999 (356.7 bits), Expect = 9.2e-133, Sum P(3) = 9.2e-133
Identities = 190/405 (46%), Positives = 272/405 (67%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQV-ASSSAFPPIEVPNFDLQPQIFCKVV 115
+Y ELWHACAGPL ++P++ + V YFPQGH+EQV AS++ ++P +DL ++ C+V+
Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVI 117
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+V L A + DEVY Q+ LLP+ + +E + P + H FCKT
Sbjct: 118 NVDLKAEADTDEVYAQITLLPEANQDENAIEKE----------APLPPPPRFQVHSFCKT 167
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTSTHGGFSV RR A++C PPLD +Q P+QELVAKDLH EWRFRHI+RGQPRRH
Sbjct: 168 LTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRH 227
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LL +GWS+FVS K LV+GDA +FLRG++GELR+G+RR+++ + +P S++S + + VL
Sbjct: 228 LLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVL 287
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
+ +A+ST +MF V+Y PR + ++F++P+ +Y++ + N IG RFKMRFE +++PE+R
Sbjct: 288 ATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQR 347
Query: 356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP 415
G + GI + DP RWP SKWR L VRWDE ++VSPW+++ +++ P LS P
Sbjct: 348 FTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMP 407
Query: 416 RMKKLRTGLQAPPPDYPVSARGGGV---LDFEESVRSSKVLQGQE 457
R K+ R+ + PD + R G +D + S+VLQGQE
Sbjct: 408 RPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQE 452
Score = 300 (110.7 bits), Expect = 9.2e-133, Sum P(3) = 9.2e-133
Identities = 71/191 (37%), Positives = 98/191 (51%)
Query: 582 PKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFK-A 640
P T+Q T N + + L ++ M + + + N LN+ + I +P +
Sbjct: 639 PFTIQEETAKSREGNCRLFGIPLTNN---MNGTDSTMSQRNNLNDAAGLTQIASPKVQDL 695
Query: 641 NMRSHKDGSFNGTAAGCKLFGFXXXXXXXXXXXXXXGKRSCTKVHKQGSLVGRAIDLWRL 700
+ +S S N + F RSCTKVHKQG +GR++DL +
Sbjct: 696 SDQSKGSKSTNDHREQGRPFQ-TNNPHPKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKF 754
Query: 701 NGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYT 760
Y +L++EL+ LF G L P K W I+YTD END+M+VGDDPW EFC V KI IYT
Sbjct: 755 QNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYT 814
Query: 761 QEEVEKMTIGT 771
+EEV KM GT
Sbjct: 815 KEEVRKMNPGT 825
Score = 38 (18.4 bits), Expect = 9.2e-133, Sum P(3) = 9.2e-133
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 519 KVLQGQEICPLRS 531
+VLQGQE LR+
Sbjct: 446 RVLQGQEYSTLRT 458
Score = 37 (18.1 bits), Expect = 4.4e-105, Sum P(3) = 4.4e-105
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 758 IYTQEEVEKMTIGTTDD 774
+YT EE + M +G DD
Sbjct: 784 VYTDEENDMMLVG--DD 798
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 1162 (414.1 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
Identities = 226/409 (55%), Positives = 286/409 (69%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVD 116
+ ELWHACAGPL SLPK+G++V+YFPQGHLEQ P + L P +FC+++D
Sbjct: 51 VCLELWHACAGPLISLPKRGSLVLYFPQGHLEQA------PDFSAAIYGLPPHVFCRILD 104
Query: 117 VQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKS-TPHMFCKT 175
V+L A DEVY QV+LLP E E + + ++ +S TPHMFCKT
Sbjct: 105 VKLHAETTTDEVYAQVSLLP--ESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKT 162
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTSTHGGFSVPRRAAEDCFPPLDY Q RPSQEL+A+DLHG+EWRFRHIYRGQPRRH
Sbjct: 163 LTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRH 222
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LLTTGWS FV++K LVSGDAVLFLRG DG+LRLG+RR+ Q S QN N
Sbjct: 223 LLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNF 282
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
S VA+A+ST S+F + Y+P+A+ ++F+IP K++K++ P CIG RFK R E +D+ ERR
Sbjct: 283 SEVAHAISTHSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERR 342
Query: 356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP 415
G+++GI+DLDP RWP SKWRCL+VRWD+ + + HQ++VSPWEI+ S S+ +
Sbjct: 343 SPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTT 402
Query: 416 RMKKLRTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQGQENV-GFVS 463
K+ R G + PD PVS G DFEES+R +VLQGQE GF++
Sbjct: 403 GPKRSRIGFSSGKPDIPVS-EGIRATDFEESLRFQRVLQGQEIFPGFIN 450
Score = 67 (28.6 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
Identities = 27/83 (32%), Positives = 36/83 (43%)
Query: 509 TGFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPP- 567
T F +S F KVLQGQE P S+T + G + N C +Q I PP
Sbjct: 467 TEFGDSYGFHKVLQGQETVPAYSITDHRQQH-GL-SQRNIWCGP---FQNFSTRILPPSV 521
Query: 568 SESLSNMFFPYGDMP--KTVQHH 588
S S S++ + P + HH
Sbjct: 522 SSSPSSVLLTNSNSPNGRLEDHH 544
Score = 44 (20.5 bits), Expect = 7.3e-123, Sum P(3) = 7.3e-123
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 442 DFEESVRSSKVLQGQENV 459
+F +S KVLQGQE V
Sbjct: 468 EFGDSYGFHKVLQGQETV 485
Score = 37 (18.1 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 651 NGTAAGCKLFGF 662
+G + C+LFGF
Sbjct: 544 HGGSGRCRLFGF 555
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 915 (327.2 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 181/384 (47%), Positives = 251/384 (65%)
Query: 60 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQV-ASSSAFPPIEVPNFDLQPQIFCKVVDVQ 118
ELWHACAGPL +LP++G V YFP+GH+EQ+ AS ++P+F+L +I CKV+++Q
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQ 81
Query: 119 LLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKTLTA 178
A E DEVY Q+ LLP+ L+ + + P K T H FCKTLTA
Sbjct: 82 RRAEPETDEVYAQITLLPE-------LDQSEPTSPDAPV----QEPEKCTVHSFCKTLTA 130
Query: 179 SDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLT 238
SDTSTHGGFSV RR A+DC PPLD QQ P QELVA DLH EW FRHI+RGQPRRHLLT
Sbjct: 131 SDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLT 190
Query: 239 TGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVV 298
TGWS+FVS K LV+GDA +FLRG++ ELR+G+RR ++ + +P S++S + + VL+
Sbjct: 191 TGWSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATA 250
Query: 299 ANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNG 358
A+A++T ++F VFY PR + ++F++ +Y++ + +G RFKMRFE +++PE+R +G
Sbjct: 251 AHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSG 310
Query: 359 VVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP--R 416
+ G+ + W +S+WR L V+WDE E+VSPWE++ V+ S Q P R
Sbjct: 311 TIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQPPQR 370
Query: 417 MKKLRT-GLQAPP--PDYPVSARG 437
K+ R GL +P P PV+ G
Sbjct: 371 NKRPRPPGLPSPATGPSGPVTPDG 394
Score = 292 (107.8 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 53/90 (58%), Positives = 69/90 (76%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
RSCTKVH QGS VGRAIDL R Y DL +LE +F+++G L + K W+++YTD E+D+
Sbjct: 542 RSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDM 601
Query: 739 MVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 768
M+VGDDPW+EFC V KI IYT EEV+K++
Sbjct: 602 MMVGDDPWNEFCGMVRKIFIYTPEEVKKLS 631
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 871 (311.7 bits), Expect = 7.3e-117, Sum P(3) = 7.3e-117
Identities = 172/343 (50%), Positives = 224/343 (65%)
Query: 60 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNF-DLQPQIFCKVVDVQ 118
+LWHACAGPL SLP G++VVYFPQGH EQVA+S +PN+ +L ++ C + V
Sbjct: 23 QLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLLHSVT 82
Query: 119 LLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKTLTA 178
L A+ E DEVY Q+ L P +N ++ R PT+ FCKTLTA
Sbjct: 83 LHADTETDEVYAQMTLQP------VNKYDREALLASDMGLKLNRQPTE----FFCKTLTA 132
Query: 179 SDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLT 238
SDTSTHGGFSVPRRAAE FPPLD+ Q P+QE+VAKDLH W FRHIYRGQP+RHLLT
Sbjct: 133 SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLT 192
Query: 239 TGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVV 298
TGWS+FVS K L +GD+VLF+R + +L LGIRR+ + L S++S + + +L+
Sbjct: 193 TGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAA 252
Query: 299 ANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNG 358
A+A + S F +F++PRA+ ++FV+P KY K + + +G RF+M FE +D RR G
Sbjct: 253 AHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMG 312
Query: 359 VVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEID 401
VTGI+DLDP RW S+WR L V WDE D +VS WEI+
Sbjct: 313 TVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIE 355
Score = 239 (89.2 bits), Expect = 7.3e-117, Sum P(3) = 7.3e-117
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDP-AKGWRILYTDSEND 737
R+ TKV K+GS VGR+ID+ R +GY++L +L +F +EG L DP W+++YTD END
Sbjct: 958 RTYTKVQKRGS-VGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHEND 1016
Query: 738 VMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTI 769
+++VGDDPW EF N V I I + EV++M++
Sbjct: 1017 ILLVGDDPWEEFVNCVQNIKILSSVEVQQMSL 1048
Score = 76 (31.8 bits), Expect = 7.3e-117, Sum P(3) = 7.3e-117
Identities = 34/149 (22%), Positives = 59/149 (39%)
Query: 454 QGQENVGFVSPL--YGCDTVNHPLGFEMRAPAHQSLALNGIRK--DNINELVRALPTSYT 509
QG N G ++ C + N P GF QS+ G + NIN + + T
Sbjct: 528 QGIYNNGTIAVANQVSCQSPNQPTGFSQSQLQQQSMLPTGAKMTHQNINSMGNKGLSQMT 587
Query: 510 GFVESNRFPKVLQGQEICPLRSLTGKVDLNLGTWGKPNFGCNSMNMYQASKPNIYPPPSE 569
F + +F + L+ L L + + + + N N + Q + + P PS+
Sbjct: 588 SFAQEMQFQQQLEMHNSSQL--LRNQQEQSSLHSLQQNLSQNPQQL-QMQQQSSKPSPSQ 644
Query: 570 SLSNMFFPYGDMPKTVQHHTMPPYASNLQ 598
L + + Q ++PP +S+LQ
Sbjct: 645 QLQLQLLQ--KLQQQQQQQSIPPVSSSLQ 671
Score = 47 (21.6 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 460 GFVSPLYGCDTVNHPLGFEMRAPAHQSLA 488
GF P + + PL F M+ PA + +A
Sbjct: 140 GFSVPRRAAEKIFPPLDFSMQPPAQEIVA 168
Score = 38 (18.4 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 272 RSVQPRN-GLPDSILSKQNSYPNVL 295
R PR G+PD L +N++ +
Sbjct: 370 RPKYPRQPGMPDDELDMENAFKRAM 394
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 924 (330.3 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 184/363 (50%), Positives = 242/363 (66%)
Query: 60 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFP-PIEVPNF-DLQPQIFCKVVDV 117
ELWHACAGPL SLP G+ VVYFPQGH EQVA+S+ +PN+ L PQ+ C++ +V
Sbjct: 25 ELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNV 84
Query: 118 QLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKTLT 177
+ A+ E DEVY Q+ L P LN + ++ R PT + FCKTLT
Sbjct: 85 TMHADVETDEVYAQMTLQP------LNAQEQKDPYLPAELGVPSRQPT----NYFCKTLT 134
Query: 178 ASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLL 237
ASDTSTHGGFSVPRRAAE FPPLDY QQ P+QEL+A+DLH EW+FRHI+RGQP+RHLL
Sbjct: 135 ASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLL 194
Query: 238 TTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSV 297
TTGWS+FVS K LV+GD+VLF+ +L LGIRR+ +P+ +P S+LS + + +L+
Sbjct: 195 TTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAA 254
Query: 298 VANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNP-ICIGTRFKMRFEMDDSPERRC 356
A+A +T S F +FY+PRA+ ++FVIP KYVK + + + +G RF+M FE ++S RR
Sbjct: 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRY 314
Query: 357 NGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSPR 416
G +TGI DLDP RW NS WR + V WDE + Q +VS WEI+ + P R
Sbjct: 315 MGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLR 374
Query: 417 MKK 419
+K+
Sbjct: 375 LKR 377
Score = 220 (82.5 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 62/212 (29%), Positives = 104/212 (49%)
Query: 557 QASKPNIYPPPSESLSNMFFPYGDMPKTVQHHTMPPYASNLQRENVKLNSSSIQMPAIGA 616
Q+ N+ PP + SL FP G Q + S+L V ++SSS+ MP +
Sbjct: 682 QSHTSNV-PPNAVSLPP--FPGGRECSIEQEGSASDPHSHLLF-GVNIDSSSLLMPNGMS 737
Query: 617 EIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFNGTAAGCKLFGFXXXXXXXXXXXXXX 676
+R + + ++ P +N + G+ T +
Sbjct: 738 NLRSIGI----EGGDSTTLPFTSSNFNNDFSGNLAMTTPSSCIDESGFLQSSENLGSENP 793
Query: 677 GKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSE 735
+ KV+K GS GR++D+ + + Y++L SEL +F +EG L DP + GW++++ D E
Sbjct: 794 QSNTFVKVYKSGSF-GRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRE 852
Query: 736 NDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 767
NDV+++GDDPW EF + V I I + +EV++M
Sbjct: 853 NDVLLLGDDPWPEFVSSVWCIKILSPQEVQQM 884
Score = 41 (19.5 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 460 GFVSPLYGCDTVNHPLGFEMRAPAHQSLA 488
GF P + V PL + + PA + +A
Sbjct: 143 GFSVPRRAAEKVFPPLDYSQQPPAQELMA 171
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 913 (326.5 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
Identities = 180/353 (50%), Positives = 240/353 (67%)
Query: 60 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIE--VPNF-DLQPQIFCKVVD 116
ELWHACAGPL SLP G+ VVYFPQGH EQVA+++ ++ +PN+ L PQ+ C++ +
Sbjct: 22 ELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTN-KEVDGHIPNYPSLPPQLICQLHN 80
Query: 117 VQLLANKENDEVYTQVALLP-QPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
V + A+ E DEVY Q+ L P PE E K+ P+K + FCKT
Sbjct: 81 VTMHADVETDEVYAQMTLQPLTPE------EQKETFVPIELGI-----PSKQPSNYFCKT 129
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTSTHGGFSVPRRAAE FPPLDY Q P+QEL+A+DLH VEW+FRHI+RGQP+RH
Sbjct: 130 LTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRH 189
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LLTTGWS+FVS K LV+GD+V+F+R + +L LGIR + +P+ +P S+LS + + +L
Sbjct: 190 LLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLL 249
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNP-ICIGTRFKMRFEMDDSPER 354
+ A+A +T S F VF+ PRA+ ++FVI KY+K + + I +G RF+M FE ++S R
Sbjct: 250 AAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVR 309
Query: 355 RCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLP 407
R G +TGI+DLD RWPNS WR + V WDE + Q +VS WEI+ + P
Sbjct: 310 RYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP 362
Score = 219 (82.2 bits), Expect = 1.1e-112, Sum P(2) = 1.1e-112
Identities = 40/90 (44%), Positives = 63/90 (70%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAK-GWRILYTDSEND 737
++ KV+K GS VGR++D+ R + Y++L EL +F +EGLL DP + GW++++ D END
Sbjct: 705 KNFVKVYKSGS-VGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKEND 763
Query: 738 VMVVGDDPWHEFCNEVSKIHIYTQEEVEKM 767
++++GDDPW F N V I I + E+V +M
Sbjct: 764 ILLLGDDPWESFVNNVWYIKILSPEDVHQM 793
Score = 42 (19.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 460 GFVSPLYGCDTVNHPLGFEMRAPAHQSLA 488
GF P + V PL + ++ PA + +A
Sbjct: 140 GFSVPRRAAEKVFPPLDYTLQPPAQELIA 168
Score = 38 (18.4 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 540 LGTWGKPNFGCNSMNMYQASKPNIYPPPSESLSNMFFPYG 579
LG G C + ++ A + PS ++FP G
Sbjct: 8 LGQQGHEGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQG 47
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 857 (306.7 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 167/351 (47%), Positives = 225/351 (64%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV--PNFDLQPQIFCKV 114
+Y ELW CAGPL +P+ V YFPQGH+EQ+ +S+ + P F L P+I C V
Sbjct: 9 LYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNV 68
Query: 115 VDVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCK 174
++V L A K+ DEVY Q+ L+P + E + R H F K
Sbjct: 69 MNVSLQAEKDTDEVYAQITLIP------VGTEVDEPMSPDPSPPELQRPKV----HSFSK 118
Query: 175 TLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRR 234
LTASDTSTHGGFSV R+ A +C PPLD QQ P+QELVA+D+HG +W+F+HI+RGQPRR
Sbjct: 119 VLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRR 178
Query: 235 HLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNV 294
HLLTTGWS FV+ K LV+GD +FLRG++GELR+G+RR+ ++ +P S++S + + V
Sbjct: 179 HLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGV 238
Query: 295 LSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPER 354
L+ +A TK+MF V+Y PR + F+I KY++ + N +G RFKMRFE +DSPER
Sbjct: 239 LATARHATQTKTMFIVYYKPRTSQ--FIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPER 296
Query: 355 RCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVS 405
R +G V G+ D P+ W +SKWRCL V WDE +VSPWEI+ V+
Sbjct: 297 RYSGTVIGVKDCSPH-WKDSKWRCLEVHWDEPASISRPNKVSPWEIEPFVN 346
Score = 266 (98.7 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 79/231 (34%), Positives = 116/231 (50%)
Query: 543 WGKPNFGCNSMNMYQASKPNIYPPPSESLSNMF--FPYGDMPKTVQHHTMPPYASNLQRE 600
W P C+ + + +K + + S S+SN+ D + P +N +
Sbjct: 399 WSSPQ-QCHR-DANEDAKKSDWLNNSYSVSNVAKDSTLNDQMVSPVEQKKPETTANYRLF 456
Query: 601 NVKLNSSSIQMPAIGAEIRKANLLNEHKPVENIPTPTFKANMRSHKDGSFN-GTAAGCKL 659
+ L SSS+ +P E + A + +P+ NI PT M SH D + K
Sbjct: 457 GIDLMSSSLAVP----EEKTAPM----RPI-NISKPT----MDSHSDPKSEISKVSEEKK 503
Query: 660 FGFXXXXXXXXXXXXXXGKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGL 719
RS TKV QG VGRA+DL L GYN+L+ ++E LF+++G
Sbjct: 504 QEPAEGSPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGE 563
Query: 720 LRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIG 770
LR + W I++TD E D+M+VGDDPW EFCN V +I I+++EEV+KMT G
Sbjct: 564 LRSRNQ-WEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTPG 613
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 872 (312.0 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 178/385 (46%), Positives = 244/385 (63%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSS--AFPPIEVPNFDLQPQIFCKV 114
+Y ELW CAGPL +P+ V YFPQGH+EQ+ +S+ E+P FDL P+I C+V
Sbjct: 22 LYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRV 81
Query: 115 VDVQLLANKENDEVYTQVALLPQPEL-EGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFC 173
+DV L A E DEVY Q+ L P+ + E +L+ PTK H F
Sbjct: 82 LDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPIV------------GPTKQEFHSFV 129
Query: 174 KTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPR 233
K LTASDTSTHGGFSV R+ A +C P LD Q P+QELV +DLHG EWRF+HI+RGQPR
Sbjct: 130 KILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPR 189
Query: 234 RHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPN 293
RHLLTTGWS FVS K LV+GDA +FLRG++G+LR+G+RR + ++ +P S++S Q+ +
Sbjct: 190 RHLLTTGWSTFVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLG 249
Query: 294 VLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPE 353
VL+ ++AV T ++F VFY PR + F++ KY++ I + +GTRF+MRFE ++SPE
Sbjct: 250 VLATASHAVRTTTIFVVFYKPRISQ--FIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPE 307
Query: 354 RRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSI-- 411
R G + G DL +WP SKWR L V+WDE ++VSPWEI+ ++ P+S
Sbjct: 308 RIFTGTIVGSGDLSS-QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPA 366
Query: 412 ---QSS-PRMKKLRTGLQAP-PPDY 431
QS R + + ++ P PP +
Sbjct: 367 QQPQSKCKRSRPIEPSVKTPAPPSF 391
Score = 242 (90.2 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 46/90 (51%), Positives = 62/90 (68%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
RS TKV QG VGRA+DL L Y++L+ ELE +F ++G L K W +++TD E D+
Sbjct: 489 RSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLLARDK-WIVVFTDDEGDM 547
Query: 739 MVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 768
M+ GDDPW+EFC KI IY+ +EV+KMT
Sbjct: 548 MLAGDDPWNEFCKMAKKIFIYSSDEVKKMT 577
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 879 (314.5 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 177/350 (50%), Positives = 233/350 (66%)
Query: 60 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQVA-SSSAFPPIEVPNF-DLQPQIFCKVVDV 117
ELWHACAGPL LP+ G++V YF QGH EQVA S+ +VPN+ +L Q+ C+V +V
Sbjct: 54 ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNV 113
Query: 118 QLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKTLT 177
L A+K++DE+Y Q++L P ++ E + PT+ FCKTLT
Sbjct: 114 TLHADKDSDEIYAQMSLQP------VHSERDVFPVPDFGMLRGSKHPTE----FFCKTLT 163
Query: 178 ASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLL 237
ASDTSTHGGFSVPRRAAE FPPLDY Q P+QELV +DLH W FRHIYRGQP+RHLL
Sbjct: 164 ASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLL 223
Query: 238 TTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSV 297
TTGWS+FV K L +GD+VLF+R + +L +G+RR+ + + LP S+LS + + VL+
Sbjct: 224 TTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAA 283
Query: 298 VANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIM-NPICIGTRFKMRFEMDDSPERRC 356
A+A + ++ F +FY+PRA A+FVIP KY K I + + +G RF M FE +DS +RR
Sbjct: 284 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRY 343
Query: 357 NGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSL 406
G + GI+DLDP RWP SKWR L V WDE +D +VSPW+I+ SL
Sbjct: 344 MGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESL 393
Score = 212 (79.7 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDP-AKGWRILYTDSEND 737
R+ TKV K GS VGR+ID+ Y +L S +E +F +EGLL P + GW+++Y D E+D
Sbjct: 793 RTYTKVQKTGS-VGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESD 851
Query: 738 VMVVGDDPWHEFCNEVSKIHIYTQEEVEKMT 768
V++VGDDPW EF V I I + EV++M+
Sbjct: 852 VLLVGDDPWEEFVGCVRCIRILSPTEVQQMS 882
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 848 (303.6 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 174/370 (47%), Positives = 235/370 (63%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPI--EVPNFDLQPQIFCKV 114
+Y ELW ACAGPL +P+ G V YFPQGH+EQ+ +S+ + E+P F+L P+I C+V
Sbjct: 39 LYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRV 98
Query: 115 VDVQLLANKENDEVYTQVALLPQPEL-EGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFC 173
+ V L A E DEVY Q+ L P+ + E +L+ P K T F
Sbjct: 99 LSVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPLV------------EPAKPTVDSFV 146
Query: 174 KTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPR 233
K LTASDTSTHGGFSV R+ A +C P LD Q P+QELVA+DLHG EWRF+HI+RGQPR
Sbjct: 147 KILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPR 206
Query: 234 RHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPN 293
RHLLTTGWS FV+ K LV+GDA +FLRG+ G+LR+G+RR + ++ +P S++S Q+
Sbjct: 207 RHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLG 266
Query: 294 VLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPE 353
VL+ ++AV+T ++F VFY PR + F+I KY+ + N +G R++MRFE ++SPE
Sbjct: 267 VLATASHAVTTTTIFVVFYKPRISQ--FIISVNKYMMAMKNGFSLGMRYRMRFEGEESPE 324
Query: 354 RRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDR-SVS-LPPLSI 411
R G + G DL +WP SKWR L ++WDE +VSPWEI+ S S L P
Sbjct: 325 RIFTGTIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPT 383
Query: 412 QSSPRMKKLR 421
Q + K+ R
Sbjct: 384 QQQSKSKRSR 393
Score = 240 (89.5 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 46/89 (51%), Positives = 60/89 (67%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
RS KV QG+ VGRA+DL L Y++L+ ELE +F +EG L P W I++TD E D
Sbjct: 511 RSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDR 569
Query: 739 MVVGDDPWHEFCNEVSKIHIYTQEEVEKM 767
M+VGDDPW+EFC K+ IY +EV+KM
Sbjct: 570 MLVGDDPWNEFCKMAKKLFIYPSDEVKKM 598
Score = 44 (20.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 92 SSSAFPPIEVPNFDLQP-QIFCKVVDVQLLANKENDEVYTQV 132
S ++ P+ + LQ Q++ K++ V +DE+YT++
Sbjct: 2 SQTSLEPLIISIIKLQILQLWLKLIAVGWNLGSNDDELYTEL 43
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 576 (207.8 bits), Expect = 3.9e-102, Sum P(3) = 3.9e-102
Identities = 111/252 (44%), Positives = 159/252 (63%)
Query: 172 FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQ 231
F K LTASDTS +GGF VP++ A +C PPL P+QEL+AKDLHG +WRFRH YRG
Sbjct: 126 FTKVLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGT 181
Query: 232 PRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSY 291
P+RH LTTGW+ F + K LV GD ++F+RG+ GELR+GIRR+ + +P SI+S
Sbjct: 182 PQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMR 241
Query: 292 PNVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDS 351
V++ +A+ + +F V Y P + F++ Y K++ + N +G+RF MRFE DD
Sbjct: 242 HGVIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDF 301
Query: 352 PERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVS---LPP 408
ERR G + G+ D P+ W S+WR L V+WDE +VSPWEI+ +S +P
Sbjct: 302 SERRYFGTIIGVNDFSPH-WKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLMSALNVPR 360
Query: 409 LSIQSSPRMKKL 420
S+ + R++++
Sbjct: 361 SSLLKNKRLREV 372
Score = 245 (91.3 bits), Expect = 3.9e-102, Sum P(3) = 3.9e-102
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
R+CTKV QG +GRA+DL LNGY+ L+ ELE LF+++G L+ + W+I +TDS+
Sbjct: 495 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQTRNQ-WKIAFTDSDGYE 553
Query: 739 MVVGDDPWHEFCNEVSKIHIYTQEEVEKM 767
M+VGDDPW EFC V KI IY++EEV+ +
Sbjct: 554 MLVGDDPWPEFCKMVKKILIYSKEEVKNL 582
Score = 225 (84.3 bits), Expect = 3.9e-102, Sum P(3) = 3.9e-102
Identities = 53/151 (35%), Positives = 80/151 (52%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV-PNFDLQPQIFCKVV 115
+Y +LW CAGPL +PK G V YFPQG++E V +S+ E+ P DL ++ C+V+
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVI 83
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+ L +DE Y ++ L+P + +++ P ++ F K
Sbjct: 84 AIHLKVENNSDETYAEITLMPDTTQVVIPTQSENQFR-----------PLVNS---FTKV 129
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQ 206
LTASDTS +GGF VP++ A +C PPL Q
Sbjct: 130 LTASDTSAYGGFFVPKKHAIECLPPLPLPAQ 160
Score = 38 (18.4 bits), Expect = 2.0e-35, Sum P(3) = 2.0e-35
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 482 PAHQSLA--LNGIRKDNINELVRALPTSY---TGFVESNRFPKVLQGQEICPLRSLTGKV 536
PA + LA L+G + R P + TG+ E K+++G I +R TG++
Sbjct: 158 PAQELLAKDLHG-NQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGEL 216
Query: 537 DLNL 540
+ +
Sbjct: 217 RVGI 220
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 738 (264.8 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
Identities = 147/366 (40%), Positives = 214/366 (58%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV-PNFDLQPQIFCKVV 115
+Y +LW CAGPL +PK G V YFPQGH+E V +S+ E+ P D ++ C+V+
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVI 83
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+QL +DE Y ++ L+P ++ + + F K
Sbjct: 84 AIQLKVENNSDETYAEITLMPD--------------TTQVVIPTQNQNQFRPLVNSFTKV 129
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTS HGGFSVP++ A +C PPLD Q P+QE++A DLHG +WRFRHIYRG +RH
Sbjct: 130 LTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRH 189
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LLT GW+ F + K LV GD ++F+RG+ GELR+GIRR+ + +P SI+S ++ ++
Sbjct: 190 LLTIGWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGII 249
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
+ +A + MF V Y PR++ F++ Y K++ ++ N +G+RF MRFE DD ERR
Sbjct: 250 ASAKHAFDNQCMFIVVYKPRSSQ--FIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERR 307
Query: 356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP 415
G + G++D P+ W S+WR L V+WDE QVSPW+I+ +S S
Sbjct: 308 SFGTIIGVSDFSPH-WKCSEWRSLEVQWDEFASFPRPNQVSPWDIEHLTPWSNVSRSSFL 366
Query: 416 RMKKLR 421
+ K+ R
Sbjct: 367 KNKRSR 372
Score = 251 (93.4 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
R+CTKV QG +GRA+DL LNGY+ L+ ELE LF+++G L+ W I +T++E D
Sbjct: 510 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQ-ARNQWEIAFTNNEEDK 568
Query: 739 MVVGDDPWHEFCNEVSKIHIYTQEEVEKM 767
M+VG+DPW EFCN V KI IY++EEV+ +
Sbjct: 569 MLVGEDPWPEFCNMVKKIFIYSKEEVKNL 597
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 715 (256.8 bits), Expect = 2.6e-95, Sum P(3) = 2.6e-95
Identities = 145/368 (39%), Positives = 218/368 (59%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV-PNFDLQPQIFCKVV 115
+Y +LW CAGPL +PK G + YFPQG++E V +S+ E+ P DL ++ C+V+
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVI 83
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+QL +DE Y ++ L+P + + + F K
Sbjct: 84 AIQLKVENNSDETYAEITLMPD--------------TTQVVIPTQNENQFRPLVNSFTKV 129
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTS GGF VP++ A +C PPLD Q P+QEL+A DLHG +WRF H YRG P+RH
Sbjct: 130 LTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRH 187
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LLTTGW+ F + K LV+GD ++F+RG+ GELR+GIRR+ + +P SI+S ++ V+
Sbjct: 188 LLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVI 247
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
+ +A + MF V Y PR++ F++ Y K++ + N +G+RF MRFE DD ERR
Sbjct: 248 ASAKHAFDNQCMFIVVYKPRSSQ--FIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERR 305
Query: 356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDR---SVSLPPLSIQ 412
G + G++D P+ W S+WR L V+WDE +VSPWEI+ ++++P S+
Sbjct: 306 YFGTIIGVSDFSPH-WKCSEWRNLEVQWDEFASFSRPNKVSPWEIEHLMPALNVPRPSLL 364
Query: 413 SSPRMKKL 420
+ R++++
Sbjct: 365 KNKRLREV 372
Score = 229 (85.7 bits), Expect = 2.6e-95, Sum P(3) = 2.6e-95
Identities = 44/81 (54%), Positives = 59/81 (72%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
R+CTKV QG + RA+DL LNGY+ L+ ELE LF+++G L+ + W I +TDS++D
Sbjct: 509 RTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQLQTRNQ-WEIAFTDSDDDK 567
Query: 739 MVVGDDPWHEFCNEVSKIHIY 759
M+VGDDPW EFCN V KI I+
Sbjct: 568 MLVGDDPWPEFCNMVKKILIF 588
Score = 37 (18.1 bits), Expect = 2.6e-95, Sum P(3) = 2.6e-95
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 626 EH-KPVENIPTPTFKANMR 643
EH P N+P P+ N R
Sbjct: 350 EHLMPALNVPRPSLLKNKR 368
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 719 (258.2 bits), Expect = 7.8e-95, Sum P(2) = 7.8e-95
Identities = 147/366 (40%), Positives = 217/366 (59%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV-PNFDLQPQIFCKVV 115
+Y +LW CAGPL +PK G V YFPQG++E V +S+ E+ P DL ++ C+V+
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVI 83
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+ L +DE+Y ++ L+P + +++ P ++ F K
Sbjct: 84 AIHLKVENNSDEIYAEITLMPDTTQVVIPTQSENRFR-----------PLVNS---FTKV 129
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTS +GGFSVP++ A +C PPLD Q P+QE++A DLH +WRFRH YRG P+RH
Sbjct: 130 LTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRH 189
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LTTGW+ F++ K LV GD ++F+RG+ GELR+GIRR+ + +P SI+S V+
Sbjct: 190 SLTTGWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVI 249
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
+ +A + +F V Y PR++ F++ Y K++ + N +G+RF MRFE DD ERR
Sbjct: 250 ASAKHAFDNQCIFIVVYKPRSSQ--FIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERR 307
Query: 356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP 415
G + G++D P+ W S+WR L V+WDE +VSPWEI+ V P L++ S
Sbjct: 308 YFGTIIGVSDFSPH-WKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLV--PALNVPRSS 364
Query: 416 RMKKLR 421
+K R
Sbjct: 365 LLKNKR 370
Score = 244 (91.0 bits), Expect = 7.8e-95, Sum P(2) = 7.8e-95
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
R+CTKV QG +GRA+DL LNGY+ L+ ELE LF+++G L+ + W+I +TDS+
Sbjct: 511 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQTRNQ-WKIAFTDSDGYE 569
Query: 739 MVVGDDPWHEFCNEVSKIHIYTQEEVEKM 767
M+VGDDPW EFC V KI IY++EEV+ +
Sbjct: 570 MLVGDDPWPEFCKMVKKILIYSKEEVKNL 598
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 722 (259.2 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
Identities = 146/366 (39%), Positives = 212/366 (57%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV-PNFDLQPQIFCKVV 115
+Y +LW CAGPL +PK G V YFPQGH+E V +S+ E+ P DL ++ C+V+
Sbjct: 24 VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVI 83
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+ L +DE Y ++ L+P + + + F K
Sbjct: 84 AIHLKVENNSDETYAEITLMPD--------------TTQVVIPTQNENQFRPLVNSFTKV 129
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTS HGGF VP++ A +C P LD Q P+QEL+A DLHG +WRF H YRG P+RH
Sbjct: 130 LTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRH 189
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVL 295
LLTTGW+ F + K LV+GD ++F+RG+ GELR+GIRR+ + +P SI+S V+
Sbjct: 190 LLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVV 249
Query: 296 SVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERR 355
+ +A + MF V Y PR++ F++ Y K++ + N +G+RF MR E DD ERR
Sbjct: 250 ASAKHAFDNQCMFTVVYKPRSSK--FIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSERR 307
Query: 356 CNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQSSP 415
C G + G++D P+ W S+WR L V+WDE ++VSPW+I+ +P +++ S
Sbjct: 308 CFGTIIGVSDFSPH-WKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHL--MPAINVPRSF 364
Query: 416 RMKKLR 421
+K R
Sbjct: 365 LLKNKR 370
Score = 233 (87.1 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
Identities = 45/80 (56%), Positives = 58/80 (72%)
Query: 679 RSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDV 738
R+CTKV QG +GRA+DL LNGY+ L+ ELE LF+++G L+ + W I +TDS+ D
Sbjct: 511 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQTRNQ-WEIAFTDSDEDK 569
Query: 739 MVVGDDPWHEFCNEVSKIHI 758
M+VGDDPW EFCN V KI I
Sbjct: 570 MLVGDDPWPEFCNMVKKIFI 589
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 529 (191.3 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 109/262 (41%), Positives = 152/262 (58%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV-PNFDLQPQIFCKVV 115
+Y +LW+ CAGPL LPK G V YFPQGH+E + +S+ + P FDL ++ C+VV
Sbjct: 22 MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVV 81
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+ +K DEVY Q++L+P R P + F K
Sbjct: 82 AIDRKVDKNTDEVYAQISLMPDT-----------TEVMTHNTTMDTRRPIV---YFFSKI 127
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASD S GG +P++ A +CFPPLD Q +Q LVAKDL+G EW F+H++RG P+RH
Sbjct: 128 LTASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRH 187
Query: 236 LLTTG--WSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPN 293
+ T+G WS+F + K L+ GD + LRG++GELR GIRR+ + +P S++S
Sbjct: 188 MFTSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHG 247
Query: 294 VLSVVANAVSTKSMFHVFYSPR 315
V++ V NA TK MF+V Y PR
Sbjct: 248 VIASVVNAFKTKCMFNVVYKPR 269
Score = 224 (83.9 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 41/88 (46%), Positives = 62/88 (70%)
Query: 682 TKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVV 741
TKVH QG + RA+DL ++GYN L+ +LE LF+++ LR + W I++T++E M+V
Sbjct: 436 TKVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELRTRNQ-WEIVFTNNEGAEMLV 494
Query: 742 GDDPWHEFCNEVSKIHIYTQEEVEKMTI 769
GDDPW EFCN +I I ++EE++KM +
Sbjct: 495 GDDPWPEFCNMAKRIFICSKEEIKKMKL 522
Score = 156 (60.0 bits), Expect = 9.7e-88, Sum P(3) = 9.7e-88
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 343 KMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDR 402
+M+FE D E+R +G + G+ D+ P+ W +S+WR L V+WDE QVSPW+I+
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSPH-WKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 403 SVSLPPLSIQSSPRMKK 419
+ +S QSS + KK
Sbjct: 328 LIPSSDIS-QSSLKKKK 343
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 526 (190.2 bits), Expect = 8.0e-77, Sum P(3) = 8.0e-77
Identities = 111/245 (45%), Positives = 142/245 (57%)
Query: 60 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQL 119
+LWHACAG + +P + V YF QGH E + F VP P I C+VV V+
Sbjct: 10 QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPRVP-----PLILCRVVSVKF 64
Query: 120 LANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKTLTAS 179
LA+ E DEV+ ++ LLP P + L+LE K P F KTLT S
Sbjct: 65 LADAETDEVFAKITLLPLPGND-LDLE-NDAVLGLTPPSSDGNGNGKEKPASFAKTLTQS 122
Query: 180 DTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTT 239
D + GGFSVPR AE FP LDY + P Q ++AKD+HG W+FRHIYRG PRRHLLTT
Sbjct: 123 DANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTT 182
Query: 240 GWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGLPDSILSKQNSYPNVLSVVA 299
GWS FV+QK L++GD+++FLR + G+L +GIRR+ R GL S N YP +
Sbjct: 183 GWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRA--KRGGL-GSNAGSDNPYPGFSGFLR 239
Query: 300 NAVST 304
+ ST
Sbjct: 240 DDEST 244
Score = 195 (73.7 bits), Expect = 8.0e-77, Sum P(3) = 8.0e-77
Identities = 48/130 (36%), Positives = 67/130 (51%)
Query: 294 VLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPE 353
V VA A ++ F V Y PRA+ +F + + C G RFKM FE +DS
Sbjct: 274 VAEAVARAACGQA-FEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSR 332
Query: 354 RRC-NGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSIQ 412
G V+ + DP RWPNS WR L V WDE + ++VSPW ++ ++P + +
Sbjct: 333 ISWFMGTVSAVQVADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLS 392
Query: 413 S-SPRMKKLR 421
SPR KK+R
Sbjct: 393 PFSPR-KKIR 401
Score = 84 (34.6 bits), Expect = 8.0e-77, Sum P(3) = 8.0e-77
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 683 KVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVG 742
KV + VGR +DL + Y +L +L +F++E R ++Y D+ + +G
Sbjct: 584 KVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEE--RSDLLT-HVVYRDANGVIKRIG 640
Query: 743 DDPWHEFCNEVSKIHI 758
D+P+ +F ++ I
Sbjct: 641 DEPFSDFMKATKRLTI 656
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 494 (179.0 bits), Expect = 5.4e-75, Sum P(3) = 5.4e-75
Identities = 98/221 (44%), Positives = 142/221 (64%)
Query: 60 ELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEVPNFDLQPQIFCKVVDVQL 119
+LWHACAG + +P + V YFPQGH E +A+ ++ N + P + C+V+ ++
Sbjct: 19 QLWHACAGGMVRMPPMNSKVFYFPQGHAE-----NAYDCVDFGNLPIPPMVLCRVLAIKY 73
Query: 120 LANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKTLTAS 179
+A+ E+DEV+ ++ L+P + E ++ E S ++ TP F KTLT S
Sbjct: 74 MADAESDEVFAKLRLIPLKDDEYVDHE-----YGDGEDSNGFESNSEKTPS-FAKTLTQS 127
Query: 180 DTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTT 239
D + GGFSVPR AE FP LDY + P Q ++AKD+HG W+FRHIYRG PRRHLLTT
Sbjct: 128 DANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTT 187
Query: 240 GWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNGL 280
GWS FV+QK LV+GD+++F+R ++G+L +GIRR+ R G+
Sbjct: 188 GWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRA--KRGGI 226
Score = 208 (78.3 bits), Expect = 5.4e-75, Sum P(3) = 5.4e-75
Identities = 57/171 (33%), Positives = 84/171 (49%)
Query: 293 NVLSVVANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSP 352
+V+ A+S + F V Y PRA+ ++F + + P C G RFKM FE +DS
Sbjct: 275 SVIEAATLAISGRP-FEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSS 333
Query: 353 ERRC-NGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQEQVSPWEIDRSVSLPPLSI 411
G V+ + DP RWPNS WR L V WDE + ++V+PW ++ ++ P+ +
Sbjct: 334 RISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPL 393
Query: 412 QS-SPRMKKLRTGLQAPPPDYPVSARGGGVLDFEES--VRSSKVLQGQENV 459
S SP KK+R PDY V F + +RSS + +NV
Sbjct: 394 TSFSPPRKKMRLPQH---PDYNNLINSIPVPSFPSNPLIRSSPLSSVLDNV 441
Score = 95 (38.5 bits), Expect = 5.4e-75, Sum P(3) = 5.4e-75
Identities = 23/87 (26%), Positives = 42/87 (48%)
Query: 683 KVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVG 742
KV + VGR +DL L Y +L +L +F G+ + +LY D+ + G
Sbjct: 588 KVFMESDDVGRTLDLSVLGSYEELSRKLSDMF---GIKKSEMLS-SVLYRDASGAIKYAG 643
Query: 743 DDPWHEFCNEVSKIHIYTQEEVEKMTI 769
++P+ EF ++ I T++ E + +
Sbjct: 644 NEPFSEFLKTARRLTILTEQGSESVVV 670
Score = 46 (21.3 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 457 ENVGFVSPLYGCDTVN--HPLGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVES 514
+NV V+P + + V+ HP+ +P + + L + + N L+ ++P F S
Sbjct: 372 QNVKRVNP-WLVELVSNVHPIPLTSFSPPRKKMRLP--QHPDYNNLINSIPVP--SF-PS 425
Query: 515 NRFPKVLQGQEICPLRSLTGKVDLNL-GTWGKPN--FGCNSMNM--YQASKPNIYPPPS 568
N P + PL S+ V + L G + +G +S ++ Y ++P PPPS
Sbjct: 426 N--PLIRSS----PLSSVLDNVPVGLQGARHNAHQYYGLSSSDLHHYYLNRPPPPPPPS 478
Score = 43 (20.2 bits), Expect = 1.0e-57, Sum P(3) = 1.0e-57
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 591 PPYASNLQREN---VKLNSSSIQMPAIG-AEIRKANLLNEHKPVEN----IPTPTFKAN 641
P N++R N V+L S+ +P + RK L +H N IP P+F +N
Sbjct: 368 PDLLQNVKRVNPWLVELVSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPSFPSN 426
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 379 (138.5 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
Identities = 83/214 (38%), Positives = 114/214 (53%)
Query: 61 LWHACAGPLTSLPKKGNVVVYFPQGHLEQVASS-SAFPPIEVPNFDLQPQIFCKVVDVQL 119
+W ACAG +P + V YFPQGH+E S P P + C + +QL
Sbjct: 20 IWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSP-------VPCIITSIQL 72
Query: 120 LANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKTLTAS 179
LA+ DEV+ + L P + + + + T F K LT S
Sbjct: 73 LADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKVTT------FAKILTPS 126
Query: 180 DTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTT 239
D + GGFSVPR A+ FP L+++ P Q+L D+HG W FRHIYRG PRRHLLTT
Sbjct: 127 DANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTT 186
Query: 240 GWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRS 273
GWS FV+ K L++GD+V+F+R E+ +G+RR+
Sbjct: 187 GWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRRT 220
Score = 114 (45.2 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
Identities = 36/148 (24%), Positives = 64/148 (43%)
Query: 278 NGLPDSILSKQNSYPNVLSVVANAVSTKSM---FHVFYSPRATHADFVIPYQKYVKIIMN 334
+G P + + V +A++ S F V + P A ++FV+ + +
Sbjct: 251 DGSPKKTFRRSGNGKLTAEAVTDAINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSM 310
Query: 335 PICIGTRFKMRFEMDDSPERRC-NGVVTGITDLDPYRWPNSKWRCLMVRWDECIGSDHQE 393
GTR KM E +DS G+V+ T + W S W+ L + WDE + +
Sbjct: 311 YWTPGTRVKMAMETEDSSRITWFQGIVSS-TYQETGPWRGSPWKQLQITWDEPEILQNVK 369
Query: 394 QVSPWEIDRSVSLPPLSIQSSPRMKKLR 421
+V+PW+++ + L P K+L+
Sbjct: 370 RVNPWQVEIAAHATQLHTPFPPA-KRLK 396
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 430 (156.4 bits), Expect = 9.6e-40, P = 9.6e-40
Identities = 94/216 (43%), Positives = 126/216 (58%)
Query: 57 IYFELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASSSAFPPIEV-PNFDLQPQIFCKVV 115
+Y +LW CAGPL +PK G V YFPQGH+E V +S+ E+ PN DL ++ C+V+
Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVI 83
Query: 116 DVQLLANKENDEVYTQVALLPQPELEGLNLEAKQXXXXXXXXXXXXRSPTKSTPHMFCKT 175
+ L +DE Y ++ L+P + E + P ++ F K
Sbjct: 84 AIHLKVENNSDETYVEITLMPDTTQVVIPTENENQFR-----------PIVNS---FTKV 129
Query: 176 LTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRH 235
LTASDTS G FSVP + A +C PPLD Q P+QEL+A DLHG +WRF+H YR PR
Sbjct: 130 LTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD 188
Query: 236 LLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIR 271
TTGW+ F + K LV GD ++F RG+ GELR+GIR
Sbjct: 189 --TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 166 (63.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 44/118 (37%), Positives = 60/118 (50%)
Query: 170 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYR 229
HMF K +T SD +P++ AE FP LD L +DL G WRFR+ Y
Sbjct: 33 HMFDKVVTPSDVGKLNRLVIPKQHAERFFP-LDSSSNEKGLLLNFEDLTGKSWRFRYSYW 91
Query: 230 GQPRRHLLTTGWSIFVSQKNLVSGDAVLFLR-----GKDGELRLGIRRSVQPRNGLPD 282
+ +++T GWS FV K L +GD V F R G+D L + RR +P+ +PD
Sbjct: 92 NSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDWRR--RPK--VPD 145
>TAIR|locus:2098023 [details] [associations]
symbol:IAA30 "indole-3-acetic acid inducible 30"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IEP;RCA;TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0010262 "somatic embryogenesis" evidence=IMP] [GO:0010583
"response to cyclopentenone" evidence=RCA] InterPro:IPR003311
InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0003700 GO:GO:0006351 GO:GO:0048364 GO:GO:0009630
GO:GO:0010262 EMBL:AL138651 PIR:T48002 HOGENOM:HOG000005696
ProtClustDB:CLSN2683572 EMBL:AY669801 IPI:IPI00529772
RefSeq:NP_191769.1 UniGene:At.50305 IntAct:Q9M1R4 STRING:Q9M1R4
EnsemblPlants:AT3G62100.1 GeneID:825383 KEGG:ath:AT3G62100
GeneFarm:3237 TAIR:At3g62100 eggNOG:NOG324376 InParanoid:Q9M1R4
OMA:EMMIMEE PhylomeDB:Q9M1R4 Genevestigator:Q9M1R4
GermOnline:AT3G62100 Uniprot:Q9M1R4
Length = 172
Score = 146 (56.5 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 32/81 (39%), Positives = 47/81 (58%)
Query: 683 KVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPA-----KGWRILYTDSEND 737
KV+ +G +GR IDL LNGY+DL++ L+++FN L + K + Y D E D
Sbjct: 86 KVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKEGD 145
Query: 738 VMVVGDDPWHEFCNEVSKIHI 758
M+VGD PW F + V ++ I
Sbjct: 146 WMMVGDVPWEMFLSSVRRLKI 166
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 165 (63.1 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 37/98 (37%), Positives = 51/98 (52%)
Query: 164 PTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWR 223
P HMF K +T SD +P++ AE FP LD + L +D +G WR
Sbjct: 48 PPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWR 106
Query: 224 FRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRG 261
FR+ Y + +++T GWS FV +K L +GD V F RG
Sbjct: 107 FRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRG 144
Score = 42 (19.8 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 396 SPWEIDRSVSLPPLSIQSSPRMKKLRTGLQAPPPDYPVSARG 437
SP + V PL I S P + T + PP P S G
Sbjct: 240 SPLDHRNIVGSEPLVIDSVPVVPGRLTPVMLPPLPPPPSTAG 281
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 385 ECIGSDHQEQVSPWEIDR 402
EC G+D+ +Q W + R
Sbjct: 292 EC-GNDYNQQEESWLVPR 308
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 163 (62.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 37/92 (40%), Positives = 51/92 (55%)
Query: 170 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYR 229
HMF K LT SD +P++ AE+ FP L+ Q L +D +G WRFR+ Y
Sbjct: 34 HMFDKVLTPSDVGKLNRLVIPKQHAENFFP-LEDNQN--GTVLDFQDKNGKMWRFRYSYW 90
Query: 230 GQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRG 261
+ +++T GWS FV +K L +GD V F RG
Sbjct: 91 NSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRG 122
>TAIR|locus:2041324 [details] [associations]
symbol:IAA20 "indole-3-acetic acid inducible 20"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IEP;TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0009647 "skotomorphogenesis" evidence=IMP]
[GO:0010588 "cotyledon vascular tissue pattern formation"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
EMBL:AC004411 GO:GO:0009630 GO:GO:0009647 GO:GO:0010588
EMBL:AK117233 EMBL:AF348576 EMBL:U49076 IPI:IPI00547197 PIR:T02188
RefSeq:NP_182222.1 UniGene:At.10480 IntAct:O24410 STRING:O24410
DNASU:819313 EnsemblPlants:AT2G46990.1 GeneID:819313
KEGG:ath:AT2G46990 GeneFarm:3236 TAIR:At2g46990 eggNOG:NOG254610
HOGENOM:HOG000005696 InParanoid:O24410 OMA:KISRANY PhylomeDB:O24410
ProtClustDB:CLSN2683572 Genevestigator:O24410 GermOnline:AT2G46990
Uniprot:O24410
Length = 175
Score = 140 (54.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 683 KVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPA-----KGWRILYTDSEND 737
KV+ +G +GR IDL LNGY DL+ L+ +FN L + K + Y D E D
Sbjct: 88 KVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKEGD 147
Query: 738 VMVVGDDPWHEFCNEVSKIHI 758
M+VGD PW F + V ++ I
Sbjct: 148 WMMVGDVPWEMFLSTVRRLKI 168
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 157 (60.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 38/106 (35%), Positives = 55/106 (51%)
Query: 166 KSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFR 225
+S +F K +T SD +P+ AE FP L +D++G WRFR
Sbjct: 182 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 241
Query: 226 HIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLR--GKDGELRLG 269
+ Y + ++LT GWS FV +KNL +GD V F R G+D +L +G
Sbjct: 242 YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 155 (59.6 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 37/107 (34%), Positives = 55/107 (51%)
Query: 166 KSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFP-PLDYKQQRPSQELVA-KDLHGVEWR 223
K+ +F KT+T SD +P+ AE FP PL L+ +D++G WR
Sbjct: 177 KTAELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWR 236
Query: 224 FRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGI 270
FR+ Y + ++LT GWS FV +K L +GD + F R D + + I
Sbjct: 237 FRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQKFFI 283
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 153 (58.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 42/123 (34%), Positives = 60/123 (48%)
Query: 163 SPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQE---LVAKDLHG 219
S + HMF K +T SD +P++ AE FP LD S + L +D G
Sbjct: 14 SSSMEREHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTTNDSNKGLLLNFEDRSG 72
Query: 220 VEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQPRNG 279
WRFR+ Y + +++T GWS FV K L +GD V F R + +L I +P+
Sbjct: 73 NSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRRPK-- 130
Query: 280 LPD 282
+PD
Sbjct: 131 IPD 133
>TAIR|locus:2090527 [details] [associations]
symbol:IAA31 "indole-3-acetic acid inducible 31"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
GO:GO:0009630 GO:GO:0022621 EMBL:AB022219 HOGENOM:HOG000005696
EMBL:AY054274 EMBL:BT000543 IPI:IPI00540266 RefSeq:NP_188387.1
UniGene:At.22356 IntAct:Q8H174 EnsemblPlants:AT3G17600.1
GeneID:821026 KEGG:ath:AT3G17600 GeneFarm:3238 TAIR:At3g17600
eggNOG:NOG267119 InParanoid:Q8H174 OMA:KITRPER PhylomeDB:Q8H174
ProtClustDB:CLSN2913488 Genevestigator:Q8H174 GermOnline:AT3G17600
Uniprot:Q8H174
Length = 158
Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 683 KVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRIL-YTDSENDVMVV 741
KV+ +G +GR +DL +GY LL L H+F+ + + + +L Y D + D M+V
Sbjct: 76 KVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWMMV 135
Query: 742 GDDPWHEFCNEVSKIHIYTQE 762
GD PW F V ++ I E
Sbjct: 136 GDIPWDMFLETVRRLKITRPE 156
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 144 (55.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 37/106 (34%), Positives = 54/106 (50%)
Query: 171 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVA--KDLHGVEWRFRHIY 228
+F K LT SD +P++ AE FP + L+ +D G WRFR+ Y
Sbjct: 37 LFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSY 96
Query: 229 RGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKD--GELRLGIRR 272
+ ++LT GWS +V +K+L +GD VLF R + G +G RR
Sbjct: 97 WNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>TAIR|locus:2012438 [details] [associations]
symbol:RAV2 "related to ABI3/VP1 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0010167 "response to nitrate"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0015706 "nitrate transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 EMBL:AC011914 EMBL:AC011665
HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484 KO:K09287
ProtClustDB:CLSN2682511 EMBL:AB013887 EMBL:AF360312 EMBL:AY056361
EMBL:AY085908 EMBL:AF003101 IPI:IPI00548727 PIR:T51330
RefSeq:NP_001185352.1 RefSeq:NP_564947.1 UniGene:At.25344
ProteinModelPortal:P82280 SMR:P82280 DIP:DIP-59694N STRING:P82280
PaxDb:P82280 PRIDE:P82280 EnsemblPlants:AT1G68840.1
EnsemblPlants:AT1G68840.2 GeneID:843216 KEGG:ath:AT1G68840
TAIR:At1g68840 InParanoid:P82280 OMA:MDSSCID PhylomeDB:P82280
Genevestigator:P82280 Uniprot:P82280
Length = 352
Score = 147 (56.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 40/115 (34%), Positives = 58/115 (50%)
Query: 166 KSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFP-PLDYKQQRPSQELVAKDLHGVEWRF 224
K+ +F K +T SD +P++ AE FP P + +D++G WRF
Sbjct: 182 KTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRF 241
Query: 225 RHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRLGIRRSVQ--PR 277
R+ Y + ++LT GWS FV +KNL +GD V F R E +L I V+ PR
Sbjct: 242 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYIDWKVRSGPR 296
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 143 (55.4 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 51/163 (31%), Positives = 71/163 (43%)
Query: 171 MFCKTLTASDTSTHGGFSVPRRAAEDCFP---------PLDYKQQRPSQELVAKDLHGVE 221
+F K+LT SD +P++ AE FP D L +D G
Sbjct: 45 LFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKS 104
Query: 222 WRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGKDGELRL--GIRRSVQPRNG 279
WRFR+ Y + ++LT GWS FV K L GD V F R + RL G RR Q G
Sbjct: 105 WRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRRGQ---G 161
Query: 280 LPDSILSKQNSYPNVLSVVANAVSTKSMFHVF-YSPRATHADF 321
S+ + NS N S+ A+S + YS +H+++
Sbjct: 162 SSSSVAAT-NSAVNTSSM--GALSYHQIHATSNYSNPPSHSEY 201
>TAIR|locus:2180557 [details] [associations]
symbol:IAA28 "AT5G25890" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009733
"response to auxin stimulus" evidence=IMP] [GO:0010102 "lateral
root morphogenesis" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 EMBL:AF149413
GO:GO:0010102 EMBL:AC005405 HOGENOM:HOG000238261 KO:K14484
EMBL:AF149816 EMBL:BT000427 EMBL:BT002175 IPI:IPI00545995
PIR:T52143 RefSeq:NP_568478.1 UniGene:At.11439 IntAct:Q9XFM0
EnsemblPlants:AT5G25890.1 GeneID:832658 KEGG:ath:AT5G25890
GeneFarm:3188 TAIR:At5g25890 eggNOG:NOG283222 InParanoid:Q9XFM0
OMA:WEMFVST PhylomeDB:Q9XFM0 ProtClustDB:CLSN2917715
Genevestigator:Q9XFM0 GermOnline:AT5G25890 Uniprot:Q9XFM0
Length = 175
Score = 123 (48.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 678 KRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSEND 737
K K++ +G +GR ++L N Y L ++ LF+ + D + + ++Y D+E D
Sbjct: 79 KELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKKDSW-DLNRQYTLVYEDTEGD 137
Query: 738 VMVVGDDPWHEFCNEVSKIHI 758
++VGD PW F + V ++H+
Sbjct: 138 KVLVGDVPWEMFVSTVKRLHV 158
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 475 LGFEMRAPAHQSLALNGIRKDNINELVRALPTSYTGFVESNR 516
L + P HQ + N NIN + T T F+ +NR
Sbjct: 7 LELRLAPPCHQFTSNN-----NINGSKQKSSTKETSFLSNNR 43
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 50/140 (35%), Positives = 70/140 (50%)
Query: 171 MFCKTLTASDTSTHGGFSVPRRAAEDCFP-PL--DYKQQRPSQE---LV-AKDLHGVEWR 223
+F KT+T SD +P++ AE FP P PS L+ +D G WR
Sbjct: 194 LFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWR 253
Query: 224 FRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLR--GKDGELRLG--IRRS-VQPRN 278
FR+ Y + ++LT GWS FV +KNL +GD V F R G D +L + +R S VQ
Sbjct: 254 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVRSSPVQTVV 313
Query: 279 GLPD-SILSKQNSYPNVLSV 297
L +I + N PN ++V
Sbjct: 314 RLFGVNIFNVSNEKPNDVAV 333
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 126 (49.4 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 171 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVA----------KDLHGV 220
+F K+LT SD +P++ AE FP + S + VA +D G
Sbjct: 28 LFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGK 87
Query: 221 EWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGK-D-GELRLGIRRSVQPRN 278
W+FR+ Y + ++LT GWS +V K+L +GD V F R + D L +G RR + +
Sbjct: 88 CWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRGEASS 147
Query: 279 GLPDSILSKQ 288
S++S++
Sbjct: 148 SPAVSVVSQE 157
>UNIPROTKB|Q5VRR0 [details] [associations]
symbol:IAA20 "Auxin-responsive protein IAA20" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 HOGENOM:HOG000238261
EMBL:AB023482 EMBL:AP002536 EMBL:AK102541 RefSeq:NP_001056915.2
UniGene:Os.15798 STRING:Q5VRR0 EnsemblPlants:LOC_Os06g07040.1
GeneID:4340245 KEGG:dosa:Os06t0166500-01 KEGG:osa:4340245
Gramene:Q5VRR0 eggNOG:NOG246219 OMA:KCARRRS ProtClustDB:CLSN2695987
Uniprot:Q5VRR0
Length = 183
Score = 116 (45.9 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 30/80 (37%), Positives = 39/80 (48%)
Query: 683 KVHKQGSLVGRAIDLWRLNGYNDLLSELEHLF---NME-GLLRDPAKGWRILYTDSENDV 738
KV +G +GR +DL L Y +LL L +F N E G R + + Y D E D
Sbjct: 102 KVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAVTYEDGEGDW 161
Query: 739 MVVGDDPWHEFCNEVSKIHI 758
M VGD PW F V ++ I
Sbjct: 162 MQVGDVPWEAFAKSVKRLKI 181
Score = 40 (19.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 420 LRTGLQAPPPDYPVSARGGGVLDFEESVRSSKVLQG-QENVG 460
LR L +P P + G LD S S +G +E +G
Sbjct: 7 LRLALPSPSPSPATATAAGSELDLLNSAPGSCRKRGFEEALG 48
>TAIR|locus:2116592 [details] [associations]
symbol:HSL1 "HSI2-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0010030 "positive regulation of seed
germination" evidence=IGI] [GO:2000034 "regulation of seed
maturation" evidence=IGI] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009790
"embryo development" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010162 "seed dormancy
process" evidence=RCA] [GO:0010431 "seed maturation" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045595 "regulation of cell differentiation" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048316 "seed development" evidence=RCA]
[GO:0048366 "leaf development" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003340 InterPro:IPR011124 Pfam:PF02362 Pfam:PF07496
PROSITE:PS50863 PROSITE:PS51050 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0010030 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
EMBL:AL021636 EMBL:AL161580 HSSP:Q9ZWM9 eggNOG:NOG244543
HOGENOM:HOG000084353 GO:GO:2000034 EMBL:AB206554 EMBL:AK228013
IPI:IPI00541402 IPI:IPI00931064 PIR:T04644 RefSeq:NP_194929.2
UniGene:At.1885 ProteinModelPortal:Q5CCK4 SMR:Q5CCK4 STRING:Q5CCK4
PaxDb:Q5CCK4 PRIDE:Q5CCK4 EnsemblPlants:AT4G32010.1 GeneID:829332
KEGG:ath:AT4G32010 TAIR:At4g32010 InParanoid:Q5CCK4 OMA:MNALCGA
PhylomeDB:Q5CCK4 ProtClustDB:CLSN2918602 Genevestigator:Q5CCK4
Uniprot:Q5CCK4
Length = 780
Score = 128 (50.1 bits), Expect = 0.00021, P = 0.00021
Identities = 44/144 (30%), Positives = 73/144 (50%)
Query: 163 SPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEW 222
S +K P +F K L+ASD G +P+ AE FPP+ + P L +D+ G EW
Sbjct: 278 SNSKIIP-LFEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLP---LKIQDIKGKEW 333
Query: 223 --RFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGK-DGELRLGIRRSVQPRNG 279
+FR R ++L G + + L +GD V F R + +G+L +G R++ N
Sbjct: 334 VFQFRFWPNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTEPEGKLVMGYRKAT---NS 389
Query: 280 LPDSILSKQNSYPNVLSVVANAVS 303
+ K +S PN L++ +N+++
Sbjct: 390 TATQMF-KGSSEPN-LNMFSNSLN 411
>UNIPROTKB|Q6K846 [details] [associations]
symbol:IAA9 "Auxin-responsive protein IAA9" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 HOGENOM:HOG000238261
ProtClustDB:CLSN2695987 EMBL:AC069158 EMBL:AP004240 EMBL:AK073365
RefSeq:NP_001048437.1 UniGene:Os.23256
EnsemblPlants:LOC_Os02g56120.1 EnsemblPlants:LOC_Os02g56120.2
GeneID:4331061 KEGG:dosa:Os02t0805100-01 KEGG:osa:4331061
Gramene:Q6K846 eggNOG:NOG253641 OMA:ARSRACG Uniprot:Q6K846
Length = 182
Score = 115 (45.5 bits), Expect = 0.00022, P = 0.00022
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 677 GKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLF---NMEG---LLRDP---AKGW 727
G + KV K+G +GR +DL + Y++L + L +F + +G + D A G
Sbjct: 90 GGANYVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDHGDAAGP 149
Query: 728 RILYTDSENDVMVVGDDPWHEFCNEVSKIHI 758
+ Y D + D M+VGD PW +F V ++ I
Sbjct: 150 VVTYEDGDGDWMLVGDVPWDDFARSVKRLKI 180
>TAIR|locus:2197838 [details] [associations]
symbol:IAA12 "indole-3-acetic acid inducible 12"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009733 "response to auxin
stimulus" evidence=IGI] [GO:0009880 "embryonic pattern
specification" evidence=IMP] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010051 "xylem and phloem
pattern formation" evidence=IMP] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0048364 "root
development" evidence=IMP] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
GO:GO:0010051 EMBL:AC002376 GO:GO:0009880 HOGENOM:HOG000238261
EMBL:U18414 EMBL:AF332398 EMBL:AY065240 EMBL:AY096535 EMBL:AY088042
IPI:IPI00527949 PIR:S58498 RefSeq:NP_171949.1 UniGene:At.10466
UniGene:At.10797 IntAct:Q38830 STRING:Q38830 PRIDE:Q38830
DNASU:839495 EnsemblPlants:AT1G04550.2 GeneID:839495
KEGG:ath:AT1G04550 GeneFarm:3159 TAIR:At1g04550 eggNOG:NOG330636
InParanoid:Q38830 KO:K14484 OMA:WKERGRI PhylomeDB:Q38830
ProtClustDB:CLSN2681806 Genevestigator:Q38830 Uniprot:Q38830
Length = 239
Score = 116 (45.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 32/92 (34%), Positives = 44/92 (47%)
Query: 683 KVHKQGSLVGRAIDLWRLNGYNDLLSELEHLF-NMEGLL-RDPAKGWRIL---------Y 731
KV+ G +GR +D+ + Y +L LE +F M G R+ K R+L Y
Sbjct: 128 KVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTY 187
Query: 732 TDSENDVMVVGDDPWHEFCNEVSKIHIYTQEE 763
D E D M+VGD PW F N V ++ I E
Sbjct: 188 EDKEGDWMLVGDVPWRMFINSVKRLRIMGTSE 219
Score = 42 (19.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 178 ASDTSTHGGFSVPRRAAEDCFPPL 201
++++S+H G S PR + +PP+
Sbjct: 53 SAESSSHQGASPPRSSQVVGWPPI 76
>TAIR|locus:2170862 [details] [associations]
symbol:ATAUX2-11 "AT5G43700" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;ISS;RCA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007020
"microtubule nucleation" evidence=RCA] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA] [GO:0010583 "response to
cyclopentenone" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS] InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309
PROSITE:PS50962 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009536 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AB026651
HOGENOM:HOG000238261 ProtClustDB:CLSN2681778 UniGene:At.47260
EMBL:X53435 EMBL:L15450 EMBL:BT005853 IPI:IPI00523552 PIR:S12243
RefSeq:NP_199183.1 IntAct:P33077 STRING:P33077
EnsemblPlants:AT5G43700.1 GeneID:834390 KEGG:ath:AT5G43700
GeneFarm:3150 TAIR:At5g43700 eggNOG:NOG253406 InParanoid:P33077
OMA:KVYKSYP PhylomeDB:P33077 Genevestigator:P33077
GermOnline:AT5G43700 Uniprot:P33077
Length = 186
Score = 112 (44.5 bits), Expect = 0.00060, P = 0.00060
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 677 GKRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNM---EGLLRDPAKGWRIL--Y 731
G+ + KV G+ R IDL Y +L+ LE++F E R+ KG + Y
Sbjct: 86 GQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTY 145
Query: 732 TDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIG 770
D + D M+VGD PW F + ++ I EV+ + G
Sbjct: 146 EDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGLGCG 184
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 808 742 0.00088 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 627 (67 KB)
Total size of DFA: 420 KB (2201 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.43u 0.13s 60.56t Elapsed: 00:00:03
Total cpu time: 60.44u 0.13s 60.57t Elapsed: 00:00:03
Start: Mon May 20 19:22:46 2013 End: Mon May 20 19:22:49 2013