BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003592
         (808 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
          Length = 130

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 171 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRG 230
           +F K +T SD        +P+  AE  FP            L  +D++G  WRFR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72

Query: 231 QPRRHLLTTGWSIFVSQKNLVSGDAVLFLR--GKDGELRLGIR 271
             + ++LT GWS FV +KNL +GD V F R  G+D +L +G +
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK 115


>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
 pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
          Length = 129

 Score = 33.1 bits (74), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 431 YPVSARGG-GVLDFEESVRSSKVLQGQENVGFVSPLYGCDTVNHPLGFEMRAP----AHQ 485
           +P++A+G   VL  +E  +  +V        F +    C    H LG     P    + +
Sbjct: 8   FPINAQGDTAVLSLKEIKKGQQV--------FNAACAQC----HALGVTRTNPDVNLSPE 55

Query: 486 SLALNGIRKDNINELVRAL--PTSYTGFVESNRFPKVLQGQEICP 528
           +LAL    +DNI  LV  +  PT+Y GFVE +     L+  +I P
Sbjct: 56  ALALATPPRDNIAALVDYIKNPTTYDGFVEISELHPSLKSSDIFP 100


>pdb|2CU9|A Chain A, Crystal Structure Of Histone Chaperone Cia1
 pdb|2DZE|A Chain A, Crystal Structure Of Histone Chaperone Asf1 In Complex
           With A C-Terminus Of Histone H3
 pdb|2DZE|B Chain B, Crystal Structure Of Histone Chaperone Asf1 In Complex
           With A C-Terminus Of Histone H3
 pdb|2Z34|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
 pdb|2Z34|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
 pdb|2Z3F|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
 pdb|2Z3F|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
 pdb|2Z3F|C Chain C, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
 pdb|2Z3F|D Chain D, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
 pdb|2Z3F|E Chain E, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
 pdb|2Z3F|F Chain F, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
 pdb|2Z3F|G Chain G, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
 pdb|2Z3F|H Chain H, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
           PEPTIDE
          Length = 161

 Score = 30.0 bits (66), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 59  FELWHACAGPLTS-LPKKGNVVVYFPQGHLEQVASSSAFPPIEV-----------PNFDL 106
           FE+   C  PL S L  K   V        +Q+  +    PI +           PN DL
Sbjct: 24  FEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDL 83

Query: 107 QPQIFCKV-VDVQLLANKENDEVYTQVALLPQPELEGLNLE 146
            PQ+   + V V LL+    D  + +V      E+EGLNL+
Sbjct: 84  LPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQ 124


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,861,234
Number of Sequences: 62578
Number of extensions: 914343
Number of successful extensions: 1716
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 5
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)