Query 003592
Match_columns 808
No_of_seqs 318 out of 836
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 17:47:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003592.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1642-1646//hhsearch_pdb/003592hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 208.9 14.3 116 164-279 6-123 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 128.4 11.7 98 167-274 44-143 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 99.6 10.1 94 169-273 8-101 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 37.0 7.8 93 168-261 17-123 (404)
5 1wmh_B Partitioning defective- 1.0 1 1 29.8 6.4 73 680-759 7-84 (86)
6 1vd2_A Protein kinase C, IOTA 1.0 1 1 29.4 6.6 58 678-742 5-62 (89)
7 2ktr_A Sequestosome-1; autopha 1.0 1 1 26.4 6.0 63 678-745 19-96 (117)
8 1q1o_A Cell division control p 1.0 1 1 26.1 8.4 76 677-753 3-85 (98)
9 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 24.0 5.8 64 677-745 3-81 (102)
10 1oey_J P40-PHOX, neutrophil cy 1.0 1 1 20.9 5.3 51 696-771 28-78 (107)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=208.94 Aligned_cols=116 Identities=31% Similarity=0.495 Sum_probs=106.7
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHH
Q ss_conf 99987604998567256999994367011030029999977999951999964899869999999299971255145011
Q 003592 164 PTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSI 243 (808)
Q Consensus 164 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fPpLd~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~ 243 (808)
..++...+|+|+||+||++++++|+||+++|+.+||+++..+..+.++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
T ss_conf 89998624999985577189777996789999668865444578838999995899999999999789996388377488
Q ss_pred HHCCCCCCCCCEEEEEECCC--CCEEEEEEECCCCCCC
Q ss_conf 11026876798799998689--8489968831589989
Q 003592 244 FVSQKNLVSGDAVLFLRGKD--GELRLGIRRSVQPRNG 279 (808)
Q Consensus 244 FV~~K~L~aGD~VvF~R~~~--Gel~vGVRRa~r~~~~ 279 (808)
||++|+|++||.|+|++.++ +.|+|++||+.++..+
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~~~ 123 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLD 123 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSSC
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 77871998898999999538996899999989999866
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=128.41 Aligned_cols=98 Identities=21% Similarity=0.287 Sum_probs=85.3
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHC
Q ss_conf 87604998567256999994367011030029999977999951999964899869999999299971255145011110
Q 003592 167 STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVS 246 (808)
Q Consensus 167 ~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fPpLd~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FV~ 246 (808)
+...+|.|+||+||+.....|.||+.+++.+||..+ +.+.+.|. |+.|.|+++|++. ++.|++||..||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHH
T ss_conf 999989999785661898679909999997488888-------37999979-9478989999589--0787776389888
Q ss_pred CCCCCCCCEEEEEECCCC--CEEEEEEECC
Q ss_conf 268767987999986898--4899688315
Q 003592 247 QKNLVSGDAVLFLRGKDG--ELRLGIRRSV 274 (808)
Q Consensus 247 ~K~L~aGD~VvF~R~~~G--el~vGVRRa~ 274 (808)
+++|++||.++|...++. .+.|.|-|+.
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred HCCCCCCCEEEEEEECCCCEEEEEEEEECC
T ss_conf 759998989999993698659999999445
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=99.62 Aligned_cols=94 Identities=23% Similarity=0.377 Sum_probs=80.2
Q ss_pred CEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCCC
Q ss_conf 60499856725699999436701103002999997799995199996489986999999929997125514501111026
Q 003592 169 PHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQK 248 (808)
Q Consensus 169 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fPpLd~~~~~p~q~L~~~Dl~G~~W~Fr~iyrg~prrhlLTtGWs~FV~~K 248 (808)
...|.|+|+++|. ..++.||+..++.+.+.+. ..+.++|..|+.|++++.++ ..+..|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~--~~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCC--CCEEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEE--CCCEEECCCHHHHHHHC
T ss_conf 9878999877775--5318889999986486699-------88999979999999999998--99499862949999975
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 8767987999986898489968831
Q 003592 249 NLVSGDAVLFLRGKDGELRLGIRRS 273 (808)
Q Consensus 249 ~L~aGD~VvF~R~~~Gel~vGVRRa 273 (808)
+|++||.++|...++..+.|-|=+.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEECCCCEEEEEEECC
T ss_conf 9998989999985897699999789
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=37.01 Aligned_cols=93 Identities=24% Similarity=0.318 Sum_probs=65.5
Q ss_pred CCEEEEEECCCCCCCCC----CCEEEECCCHHHCCCCCCC-CCCCCCEEEEEE--ECCCCEEEEEEEEECC----C--CC
Q ss_conf 76049985672569999----9436701103002999997-799995199996--4899869999999299----9--71
Q 003592 168 TPHMFCKTLTASDTSTH----GGFSVPRRAAEDCFPPLDY-KQQRPSQELVAK--DLHGVEWRFRHIYRGQ----P--RR 234 (808)
Q Consensus 168 ~~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~fPpLd~-~~~~p~q~L~~~--Dl~G~~W~Fr~iyrg~----p--rr 234 (808)
..+.|+|.|++.|++.. +++.+|+......||.|.- .+..|.+.+.+. |...-++.++.+|.++ + ..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 25514501-1110268767987999986
Q 003592 235 HLLTTGWS-IFVSQKNLVSGDAVLFLRG 261 (808)
Q Consensus 235 hlLTtGWs-~FV~~K~L~aGD~VvF~R~ 261 (808)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=29.83 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=53.1
Q ss_pred CEEEEEECCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCC-CHHHHHHCCE---
Q ss_conf 63699655611011-005568789599999999875103554699997089997079986771676-6465650220---
Q 003592 680 SCTKVHKQGSLVGR-AIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDD-PWHEFCNEVS--- 754 (808)
Q Consensus 680 ~~vKV~m~G~~vGR-kvDL~~~~~Y~eL~~~L~~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVGD~-PW~~F~~~vk--- 754 (808)
.-||.+-++. +-| ++|-..-.+|++|..-++++|.+ ..-.+++.|+|.+||++-.-++ -..+=..+++
T Consensus 7 l~vKskf~aE-~RRFs~d~~~~~~fe~f~~lv~~lh~L------~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~plL 79 (86)
T 1wmh_B 7 VEVKSKFDAE-FRRFALPRASVSGFQEFSRLLRAVHQI------PGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPL 79 (86)
T ss_dssp EEEEEEETTE-EEEEEEEGGGCCCHHHHHHHHHHHTTC------TTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSCE
T ss_pred EEEEEECCCE-EEEEECCCCCCCCHHHHHHHHHHHCCC------CCCCEEEEEECCCCCEEEECCHHHHHHHHHHCCCCE
T ss_conf 9998633880-467672688787889999999997578------998789999889999761458899999997288747
Q ss_pred EEEEE
Q ss_conf 69994
Q 003592 755 KIHIY 759 (808)
Q Consensus 755 rI~I~ 759 (808)
||+|-
T Consensus 80 Rl~Iq 84 (86)
T 1wmh_B 80 RLLVQ 84 (86)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99997
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=29.45 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=44.3
Q ss_pred CCCEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEC
Q ss_conf 77636996556110110055687895999999998751035546999970899970799867716
Q 003592 678 KRSCTKVHKQGSLVGRAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVG 742 (808)
Q Consensus 678 ~r~~vKV~m~G~~vGRkvDL~~~~~Y~eL~~~L~~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVG 742 (808)
...-+|++-+|..+-=.++. --+|++|..++..+|.+. ....+++.|.|.|||+.-+-
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECC
T ss_pred CEEEEEEEECCEEEEEECCC--CCCHHHHHHHHHHHHCCC-----CCCEEEEEEECCCCCCCCCC
T ss_conf 71899999478599998799--989999999999996889-----89827999998997950334
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=26.38 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=43.0
Q ss_pred CCCEEEEEECC-----CEECC-CCCC---------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEC
Q ss_conf 77636996556-----11011-0055---------687895999999998751035546999970899970799867716
Q 003592 678 KRSCTKVHKQG-----SLVGR-AIDL---------WRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVG 742 (808)
Q Consensus 678 ~r~~vKV~m~G-----~~vGR-kvDL---------~~~~~Y~eL~~~L~~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVG 742 (808)
...-+|++..| ..|-| ++|- ..-.+|++|...+.++|.. | ...+|++.|.|.|||+.-..
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~---L--~~~~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA---L--RPGGFQAHYRAERGDLVAFS 93 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S--CSSCEEEEEECTTCCEEEEC
T ss_pred CCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---C--CCCCEEEEEECCCCCEEEEC
T ss_conf 528999998067778872799884267774311245677799999999997345---5--89838999998999989763
Q ss_pred CCC
Q ss_conf 766
Q 003592 743 DDP 745 (808)
Q Consensus 743 D~P 745 (808)
.+-
T Consensus 94 sDe 96 (117)
T 2ktr_A 94 SDE 96 (117)
T ss_dssp SHH
T ss_pred CHH
T ss_conf 889
No 8
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=26.08 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=54.7
Q ss_pred CCCCEEEEEECCC----EEC--CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCCC-HHHH
Q ss_conf 9776369965561----101--10055687895999999998751035546999970899970799867716766-4656
Q 003592 677 GKRSCTKVHKQGS----LVG--RAIDLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDP-WHEF 749 (808)
Q Consensus 677 ~~r~~vKV~m~G~----~vG--RkvDL~~~~~Y~eL~~~L~~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVGD~P-W~~F 749 (808)
.+..-+||+-+.. .++ |.|=+..--+|++|+..+.+-|.+.. -.+-....++-|+|.|||+...+++- |++-
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A 81 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NNNISPITKIKYQDEDGDFVVLGSDEDWNVA 81 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SSCCCCCCCEEEECSSSCEEEECSHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCCEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf 751899999357656666686799996699989999999999976786-5454650479999699998877288999999
Q ss_pred HHCC
Q ss_conf 5022
Q 003592 750 CNEV 753 (808)
Q Consensus 750 ~~~v 753 (808)
..++
T Consensus 82 ~e~~ 85 (98)
T 1q1o_A 82 KEML 85 (98)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9997
No 9
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=23.99 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=43.6
Q ss_pred CCCCEEEEEECC-----CEECC-CCCCC---------CCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf 977636996556-----11011-00556---------8789599999999875103554699997089997079986771
Q 003592 677 GKRSCTKVHKQG-----SLVGR-AIDLW---------RLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVV 741 (808)
Q Consensus 677 ~~r~~vKV~m~G-----~~vGR-kvDL~---------~~~~Y~eL~~~L~~MF~~~g~L~~~~~~w~ivY~D~EGD~mLV 741 (808)
....-+|++..| ..|-| ++|.. .-.+|++|...+.++|.. |. ..++++.|.|.|||+.-.
T Consensus 3 ~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l~--~~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 3 HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---LR--PGGFQAHYRAERGDLVAF 77 (102)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---SC--SSCEEEEEECTTCCEEEE
T ss_pred CCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CC--CCCEEEEEECCCCCEEEE
T ss_conf 7469999998167777872699883367775422244666699999999997544---57--983899999899998976
Q ss_pred CCCC
Q ss_conf 6766
Q 003592 742 GDDP 745 (808)
Q Consensus 742 GD~P 745 (808)
.++-
T Consensus 78 SsDe 81 (102)
T 2kkc_A 78 SSDE 81 (102)
T ss_dssp CSHH
T ss_pred CCHH
T ss_conf 4889
No 10
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=20.88 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCCCHHHHHHCCEEEEEECHHHHHCCCCCC
Q ss_conf 5568789599999999875103554699997089997079986771676646565022069994567561135688
Q 003592 696 DLWRLNGYNDLLSELEHLFNMEGLLRDPAKGWRILYTDSENDVMVVGDDPWHEFCNEVSKIHIYTQEEVEKMTIGT 771 (808)
Q Consensus 696 DL~~~~~Y~eL~~~L~~MF~~~g~L~~~~~~w~ivY~D~EGD~mLVGD~PW~~F~~~vkrI~I~~~~e~~~m~~~~ 771 (808)
||+..-.|.+|..-..+-|..+ +-.+-|.|.|||+ |+|+..+++.-|....
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~--------DIaLNYrD~eGDL-----------------IrilddeDv~lmi~~s 78 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE--------DIALNYRDAEGDL-----------------VRLLSDEDVALMVRQA 78 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS--------SEEEEEECTTSCE-----------------EECCSHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHCCC--------CEEEEEECCCCCE-----------------EEECCHHHHHHHHHHH
T ss_conf 6466977899999999873410--------0466303688998-----------------9981657789999996
Done!