Query 003593
Match_columns 808
No_of_seqs 812 out of 4167
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0953 Mitochondrial RNA heli 100.0 3.7E-89 8E-94 740.7 44.0 568 194-765 89-668 (700)
2 COG0514 RecQ Superfamily II DN 100.0 2E-54 4.4E-59 490.4 25.6 460 277-800 13-542 (590)
3 PLN03137 ATP-dependent DNA hel 100.0 9.2E-53 2E-57 500.3 31.7 427 258-727 437-949 (1195)
4 PRK11057 ATP-dependent DNA hel 100.0 1.6E-51 3.4E-56 485.7 30.9 478 276-799 20-556 (607)
5 KOG0333 U5 snRNP-like RNA heli 100.0 8.9E-52 1.9E-56 446.7 21.8 354 158-580 196-627 (673)
6 TIGR01389 recQ ATP-dependent D 100.0 2.4E-49 5.2E-54 467.6 28.4 479 276-800 8-546 (591)
7 TIGR00614 recQ_fam ATP-depende 100.0 9.7E-49 2.1E-53 450.2 29.0 403 275-724 5-467 (470)
8 KOG0331 ATP-dependent RNA heli 100.0 7.6E-49 1.7E-53 437.5 23.9 354 206-584 47-455 (519)
9 KOG0345 ATP-dependent RNA heli 100.0 1E-45 2.2E-50 396.2 29.9 404 268-748 15-492 (567)
10 KOG0330 ATP-dependent RNA heli 100.0 2.1E-45 4.5E-50 386.0 21.3 297 269-581 71-411 (476)
11 PTZ00110 helicase; Provisional 100.0 1.5E-43 3.3E-48 412.7 31.3 298 270-583 141-490 (545)
12 COG0513 SrmB Superfamily II DN 100.0 4.6E-44 1E-48 413.4 25.6 304 253-577 29-380 (513)
13 KOG0338 ATP-dependent RNA heli 100.0 2.7E-43 5.9E-48 379.5 23.0 316 251-587 179-543 (691)
14 KOG0343 RNA Helicase [RNA proc 100.0 8.7E-43 1.9E-47 378.5 23.8 321 253-593 69-439 (758)
15 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-42 1.2E-46 398.0 31.1 320 206-580 107-478 (518)
16 KOG0336 ATP-dependent RNA heli 100.0 1.1E-42 2.4E-47 365.8 21.3 297 269-580 230-575 (629)
17 PRK04837 ATP-dependent RNA hel 100.0 8.9E-42 1.9E-46 388.1 26.4 308 254-583 9-368 (423)
18 KOG0341 DEAD-box protein abstr 100.0 1.6E-42 3.5E-47 362.4 16.7 309 250-577 164-528 (610)
19 PRK10590 ATP-dependent RNA hel 100.0 5.8E-41 1.3E-45 384.5 28.7 298 269-583 11-358 (456)
20 KOG0342 ATP-dependent RNA heli 100.0 7.1E-42 1.5E-46 369.3 19.3 304 269-587 92-447 (543)
21 PRK11776 ATP-dependent RNA hel 100.0 1.3E-40 2.8E-45 382.5 29.4 297 269-581 14-353 (460)
22 PRK04537 ATP-dependent RNA hel 100.0 1.6E-40 3.5E-45 388.7 28.4 296 269-580 19-367 (572)
23 KOG0340 ATP-dependent RNA heli 100.0 1.3E-40 2.8E-45 346.3 24.0 314 253-587 7-371 (442)
24 PRK11634 ATP-dependent RNA hel 100.0 3.7E-40 8E-45 388.0 29.7 301 269-585 16-360 (629)
25 PRK11192 ATP-dependent RNA hel 100.0 6.8E-40 1.5E-44 374.0 29.1 297 269-580 11-355 (434)
26 KOG0328 Predicted ATP-dependen 100.0 1.8E-40 3.8E-45 335.6 21.1 312 251-583 25-379 (400)
27 KOG0339 ATP-dependent RNA heli 100.0 2.3E-40 5E-45 356.3 22.8 297 269-580 233-578 (731)
28 KOG0335 ATP-dependent RNA heli 100.0 1.4E-40 3.1E-45 365.3 21.5 298 270-583 85-450 (482)
29 KOG0352 ATP-dependent DNA heli 100.0 1.6E-40 3.5E-45 351.3 20.7 341 279-637 20-431 (641)
30 KOG0351 ATP-dependent DNA heli 100.0 1.1E-40 2.4E-45 397.9 19.1 331 281-628 266-646 (941)
31 PRK01297 ATP-dependent RNA hel 100.0 5.5E-39 1.2E-43 370.3 28.7 297 269-581 97-446 (475)
32 KOG0348 ATP-dependent RNA heli 100.0 1E-38 2.2E-43 346.1 25.2 298 276-588 154-565 (708)
33 PTZ00424 helicase 45; Provisio 100.0 3.7E-38 8.1E-43 355.9 28.2 313 251-584 26-381 (401)
34 KOG0326 ATP-dependent RNA heli 100.0 4.9E-39 1.1E-43 329.7 16.0 301 269-585 95-437 (459)
35 KOG0334 RNA helicase [RNA proc 100.0 5.1E-38 1.1E-42 366.1 22.0 319 208-580 353-723 (997)
36 TIGR03817 DECH_helic helicase/ 100.0 6.4E-37 1.4E-41 367.1 29.1 293 269-577 24-386 (742)
37 KOG0353 ATP-dependent DNA heli 100.0 1.1E-37 2.4E-42 325.0 17.2 328 280-630 95-515 (695)
38 KOG0346 RNA helicase [RNA proc 100.0 6.3E-37 1.4E-41 325.9 22.8 308 253-583 19-416 (569)
39 KOG0332 ATP-dependent RNA heli 100.0 1.5E-35 3.2E-40 310.2 24.4 309 253-577 90-443 (477)
40 PRK02362 ski2-like helicase; P 100.0 7.9E-35 1.7E-39 351.8 29.2 319 269-591 11-414 (737)
41 KOG0347 RNA helicase [RNA proc 100.0 8.5E-36 1.8E-40 324.3 18.2 292 269-579 191-572 (731)
42 KOG0344 ATP-dependent RNA heli 100.0 6.8E-34 1.5E-38 314.2 26.2 331 202-581 114-499 (593)
43 PRK00254 ski2-like helicase; P 100.0 4.4E-33 9.6E-38 335.8 30.2 315 269-589 11-402 (720)
44 PRK01172 ski2-like helicase; P 100.0 2.9E-33 6.3E-38 335.7 28.4 318 269-591 11-394 (674)
45 PRK13767 ATP-dependent helicas 100.0 1.7E-32 3.7E-37 335.0 29.8 358 277-650 28-474 (876)
46 KOG4284 DEAD box protein [Tran 100.0 3.2E-32 6.9E-37 300.2 17.4 306 252-579 24-381 (980)
47 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.3E-31 5E-36 319.3 26.4 306 292-605 15-362 (819)
48 KOG0337 ATP-dependent RNA heli 100.0 4.6E-32 9.9E-37 287.8 17.0 310 253-583 21-375 (529)
49 PRK11664 ATP-dependent RNA hel 100.0 6.9E-31 1.5E-35 315.9 25.9 306 292-605 18-365 (812)
50 KOG0350 DEAD-box ATP-dependent 100.0 4.1E-31 8.8E-36 285.6 18.7 301 271-587 149-551 (620)
51 KOG0327 Translation initiation 100.0 1E-30 2.2E-35 276.8 21.0 296 269-582 36-375 (397)
52 TIGR00580 mfd transcription-re 100.0 7.9E-30 1.7E-34 309.0 29.4 282 274-577 445-770 (926)
53 PHA02653 RNA helicase NPH-II; 100.0 8.8E-30 1.9E-34 299.2 26.6 283 287-578 172-515 (675)
54 PRK10689 transcription-repair 100.0 1.4E-29 3.1E-34 312.9 28.8 284 271-576 591-918 (1147)
55 PRK10917 ATP-dependent DNA hel 100.0 3.1E-29 6.6E-34 299.6 29.0 281 272-575 253-587 (681)
56 TIGR01587 cas3_core CRISPR-ass 100.0 1.6E-29 3.4E-34 281.6 22.5 266 296-576 1-335 (358)
57 TIGR00643 recG ATP-dependent D 100.0 2.2E-29 4.8E-34 298.8 25.0 282 270-574 225-563 (630)
58 COG1204 Superfamily II helicas 100.0 8.7E-30 1.9E-34 303.0 20.3 280 292-574 45-405 (766)
59 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.6E-29 1E-33 294.7 22.5 268 277-563 12-379 (844)
60 COG1201 Lhr Lhr-like helicases 100.0 4.5E-28 9.7E-33 284.9 29.2 362 270-650 12-438 (814)
61 PRK09751 putative ATP-dependen 100.0 2E-28 4.2E-33 304.2 25.7 332 299-650 1-461 (1490)
62 PRK11131 ATP-dependent RNA hel 100.0 7.1E-28 1.5E-32 294.4 25.9 300 292-604 87-436 (1294)
63 PRK14701 reverse gyrase; Provi 100.0 9.2E-28 2E-32 303.1 22.9 301 266-587 64-467 (1638)
64 KOG0922 DEAH-box RNA helicase 100.0 1.6E-27 3.5E-32 267.7 21.3 302 292-607 64-418 (674)
65 COG1202 Superfamily II helicas 100.0 6.4E-28 1.4E-32 264.1 17.6 301 269-579 204-555 (830)
66 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.8E-27 8.2E-32 289.1 23.8 295 292-598 80-423 (1283)
67 KOG0947 Cytoplasmic exosomal R 99.9 1.4E-26 3E-31 265.2 17.5 301 285-589 303-738 (1248)
68 PHA02558 uvsW UvsW helicase; P 99.9 1.1E-25 2.4E-30 260.8 25.1 266 280-563 113-441 (501)
69 KOG0924 mRNA splicing factor A 99.9 5.2E-26 1.1E-30 252.4 20.8 294 291-599 368-718 (1042)
70 KOG0948 Nuclear exosomal RNA h 99.9 1E-26 2.2E-31 260.7 14.9 306 283-592 133-556 (1041)
71 PRK09401 reverse gyrase; Revie 99.9 4.1E-26 8.9E-31 282.8 21.8 275 269-559 68-429 (1176)
72 KOG0926 DEAH-box RNA helicase 99.9 2.9E-25 6.2E-30 250.2 20.4 289 249-576 252-703 (1172)
73 COG1643 HrpA HrpA-like helicas 99.9 7E-25 1.5E-29 260.0 22.3 308 292-607 63-415 (845)
74 KOG0923 mRNA splicing factor A 99.9 1.4E-24 3E-29 241.2 21.7 331 290-653 276-663 (902)
75 COG4581 Superfamily II RNA hel 99.9 4.4E-25 9.5E-30 263.0 18.6 297 276-576 115-536 (1041)
76 TIGR03158 cas3_cyano CRISPR-as 99.9 2.3E-24 4.9E-29 239.5 22.0 253 286-559 4-357 (357)
77 PRK12898 secA preprotein trans 99.9 9.3E-24 2E-28 245.1 24.6 122 447-585 461-594 (656)
78 COG1111 MPH1 ERCC4-like helica 99.9 4E-23 8.6E-28 226.1 25.5 106 456-577 364-481 (542)
79 KOG0952 DNA/RNA helicase MER3/ 99.9 1.5E-23 3.3E-28 243.2 22.7 291 292-587 124-502 (1230)
80 PRK09200 preprotein translocas 99.9 3E-23 6.6E-28 245.5 25.7 120 447-583 416-547 (790)
81 TIGR00603 rad25 DNA repair hel 99.9 2.1E-23 4.5E-28 244.7 22.9 261 295-578 274-608 (732)
82 COG1205 Distinct helicase fami 99.9 2.2E-23 4.7E-28 251.7 22.2 288 271-575 60-420 (851)
83 TIGR01054 rgy reverse gyrase. 99.9 1.9E-23 4.2E-28 259.5 22.0 262 266-538 63-410 (1171)
84 PRK13766 Hef nuclease; Provisi 99.9 1.3E-23 2.7E-28 256.7 20.1 104 457-576 365-478 (773)
85 TIGR03714 secA2 accessory Sec 99.9 2.2E-22 4.8E-27 236.1 26.7 119 447-583 412-543 (762)
86 KOG0329 ATP-dependent RNA heli 99.9 2.1E-24 4.6E-29 216.2 8.3 258 269-577 52-355 (387)
87 PRK04914 ATP-dependent helicas 99.9 1.3E-21 2.9E-26 236.8 27.9 115 448-574 484-600 (956)
88 TIGR00963 secA preprotein tran 99.9 3.9E-21 8.5E-26 224.4 26.0 112 456-584 403-524 (745)
89 KOG0951 RNA helicase BRR2, DEA 99.9 2.5E-21 5.3E-26 227.1 21.6 291 293-588 324-714 (1674)
90 KOG0354 DEAD-box like helicase 99.9 2.7E-20 5.8E-25 214.8 25.2 101 460-576 416-528 (746)
91 KOG0349 Putative DEAD-box RNA 99.9 7.1E-21 1.5E-25 202.6 15.4 112 451-576 499-614 (725)
92 COG1061 SSL2 DNA or RNA helica 99.8 5.2E-20 1.1E-24 209.9 22.9 263 281-561 38-376 (442)
93 TIGR00595 priA primosomal prot 99.8 2.2E-20 4.8E-25 215.6 19.6 282 298-584 1-389 (505)
94 PRK05580 primosome assembly pr 99.8 5.9E-20 1.3E-24 219.3 23.4 293 287-584 152-557 (679)
95 COG1200 RecG RecG-like helicas 99.8 1.2E-19 2.6E-24 206.7 23.2 260 297-578 286-592 (677)
96 KOG0920 ATP-dependent RNA heli 99.8 1.1E-19 2.4E-24 215.0 23.7 363 291-674 185-632 (924)
97 COG1197 Mfd Transcription-repa 99.8 7.9E-19 1.7E-23 209.9 29.7 260 296-577 617-913 (1139)
98 PRK09694 helicase Cas3; Provis 99.8 1.8E-19 3.9E-24 217.2 23.2 268 281-563 286-664 (878)
99 KOG0925 mRNA splicing factor A 99.8 1.7E-19 3.7E-24 195.0 19.9 330 292-654 60-445 (699)
100 KOG0950 DNA polymerase theta/e 99.8 2.9E-19 6.3E-24 207.4 17.9 308 274-590 216-625 (1008)
101 PRK11448 hsdR type I restricti 99.8 3.4E-17 7.4E-22 202.8 26.7 257 294-563 433-802 (1123)
102 PRK12906 secA preprotein trans 99.8 2E-17 4.3E-22 195.1 23.4 120 447-583 428-559 (796)
103 COG4098 comFA Superfamily II D 99.8 4.6E-17 9.9E-22 170.5 20.8 280 290-584 112-423 (441)
104 PRK13104 secA preprotein trans 99.7 7.7E-16 1.7E-20 182.7 24.0 118 448-582 433-592 (896)
105 COG1203 CRISPR-associated heli 99.7 2E-16 4.3E-21 190.8 18.3 272 293-577 212-550 (733)
106 PRK12904 preprotein translocas 99.7 1.1E-15 2.5E-20 181.1 24.2 119 447-582 418-578 (830)
107 KOG0949 Predicted helicase, DE 99.7 4.3E-15 9.4E-20 171.9 20.9 97 483-590 964-1060(1330)
108 KOG1123 RNA polymerase II tran 99.6 1.6E-15 3.5E-20 164.8 14.7 421 98-579 160-655 (776)
109 cd00268 DEADc DEAD-box helicas 99.6 2.8E-15 6.1E-20 153.3 12.6 156 269-424 9-193 (203)
110 PLN03142 Probable chromatin-re 99.6 4.3E-14 9.3E-19 172.6 24.6 110 457-577 486-599 (1033)
111 PRK12899 secA preprotein trans 99.6 1E-13 2.2E-18 164.5 26.4 112 276-387 84-228 (970)
112 PF00271 Helicase_C: Helicase 99.6 2.7E-15 5.9E-20 129.4 9.0 73 479-562 5-78 (78)
113 PRK13107 preprotein translocas 99.6 6E-14 1.3E-18 166.2 21.8 110 456-582 447-596 (908)
114 TIGR00631 uvrb excinuclease AB 99.6 3.2E-14 6.9E-19 168.6 16.0 131 446-587 429-563 (655)
115 COG1110 Reverse gyrase [DNA re 99.5 2.9E-13 6.3E-18 158.7 21.6 250 276-538 78-418 (1187)
116 COG0556 UvrB Helicase subunit 99.5 1.2E-12 2.5E-17 144.6 23.8 129 446-585 433-565 (663)
117 cd00079 HELICc Helicase superf 99.5 2.1E-13 4.6E-18 128.4 12.8 112 447-573 16-131 (131)
118 PRK05298 excinuclease ABC subu 99.5 6.2E-13 1.3E-17 158.6 19.6 128 447-585 434-565 (652)
119 TIGR00348 hsdR type I site-spe 99.5 2.4E-12 5.1E-17 154.1 21.6 268 294-575 263-649 (667)
120 COG4096 HsdR Type I site-speci 99.4 2.8E-12 6E-17 148.7 18.4 256 294-563 185-527 (875)
121 PF00270 DEAD: DEAD/DEAH box h 99.4 3E-13 6.4E-18 133.7 8.9 118 285-402 5-147 (169)
122 smart00490 HELICc helicase sup 99.4 7.5E-13 1.6E-17 114.0 9.2 79 472-562 3-82 (82)
123 KOG0951 RNA helicase BRR2, DEA 99.4 1.6E-11 3.5E-16 145.8 20.6 348 292-652 1157-1574(1674)
124 COG1198 PriA Primosomal protei 99.4 1.3E-11 2.8E-16 145.7 18.9 289 295-588 218-615 (730)
125 PRK12326 preprotein translocas 99.3 1.9E-10 4.2E-15 133.9 20.8 121 447-584 415-554 (764)
126 PRK12900 secA preprotein trans 99.2 7.5E-11 1.6E-15 140.8 14.2 121 447-584 586-718 (1025)
127 KOG0385 Chromatin remodeling c 99.2 9.7E-10 2.1E-14 125.9 22.3 112 456-577 485-599 (971)
128 TIGR01407 dinG_rel DnaQ family 99.2 2.4E-10 5.3E-15 140.9 19.0 115 454-575 671-813 (850)
129 PRK13103 secA preprotein trans 99.1 2.3E-09 5E-14 127.9 21.6 111 276-387 78-215 (913)
130 KOG4150 Predicted ATP-dependen 99.1 2E-10 4.4E-15 127.0 10.8 272 287-574 294-637 (1034)
131 smart00487 DEXDc DEAD-like hel 99.1 5.9E-10 1.3E-14 111.5 9.9 127 277-403 4-158 (201)
132 PF12513 SUV3_C: Mitochondrial 99.0 3.9E-10 8.4E-15 88.2 6.0 49 708-757 1-49 (49)
133 cd00046 DEXDc DEAD-like helica 99.0 1.1E-09 2.5E-14 102.9 8.2 99 295-393 1-122 (144)
134 CHL00122 secA preprotein trans 99.0 6.2E-08 1.3E-12 115.4 24.0 111 276-387 72-209 (870)
135 PF02399 Herpes_ori_bp: Origin 98.9 4.9E-08 1.1E-12 115.0 21.0 265 292-575 47-386 (824)
136 KOG0387 Transcription-coupled 98.9 1.2E-07 2.5E-12 109.8 22.0 112 455-576 543-657 (923)
137 KOG0390 DNA repair protein, SN 98.9 1.5E-07 3.3E-12 111.2 23.4 110 465-584 603-717 (776)
138 PF04851 ResIII: Type III rest 98.9 8.1E-09 1.8E-13 103.0 9.9 50 293-342 24-74 (184)
139 KOG0384 Chromodomain-helicase 98.9 6.7E-08 1.5E-12 116.1 18.8 110 457-577 698-811 (1373)
140 PRK12903 secA preprotein trans 98.9 1.2E-07 2.5E-12 112.6 20.0 120 447-583 414-545 (925)
141 TIGR02562 cas3_yersinia CRISPR 98.8 9.1E-08 2E-12 115.4 18.9 89 465-564 765-882 (1110)
142 PRK07246 bifunctional ATP-depe 98.8 6E-07 1.3E-11 110.0 23.8 113 455-575 645-782 (820)
143 COG4889 Predicted helicase [Ge 98.7 9.3E-08 2E-12 110.8 14.1 86 480-574 496-585 (1518)
144 KOG0389 SNF2 family DNA-depend 98.7 2.6E-06 5.7E-11 98.8 23.5 112 456-577 775-888 (941)
145 KOG0921 Dosage compensation co 98.6 1.5E-07 3.3E-12 109.5 12.1 277 291-576 390-773 (1282)
146 PRK14873 primosome assembly pr 98.6 2.9E-06 6.3E-11 101.2 19.8 85 303-387 169-270 (665)
147 PRK12902 secA preprotein trans 98.6 4.2E-06 9.2E-11 100.0 21.0 94 294-387 98-218 (939)
148 PF07652 Flavi_DEAD: Flaviviru 98.5 2.8E-07 6.2E-12 87.8 6.7 92 293-387 3-108 (148)
149 KOG1000 Chromatin remodeling p 98.3 5.1E-05 1.1E-09 84.2 21.1 129 457-596 491-624 (689)
150 KOG0392 SNF2 family DNA-depend 98.3 2.6E-05 5.6E-10 94.2 19.7 105 460-575 1343-1452(1549)
151 KOG1002 Nucleotide excision re 98.2 0.00038 8.2E-09 77.4 23.1 105 461-576 641-748 (791)
152 COG0610 Type I site-specific r 98.0 8.5E-05 1.8E-09 92.6 16.7 270 293-575 272-651 (962)
153 KOG0386 Chromatin remodeling c 97.9 6.5E-05 1.4E-09 89.5 11.9 107 459-575 728-836 (1157)
154 PF00176 SNF2_N: SNF2 family N 97.9 6.3E-05 1.4E-09 81.2 10.0 119 292-413 23-172 (299)
155 KOG4439 RNA polymerase II tran 97.8 0.00085 1.9E-08 77.6 17.9 80 474-563 764-845 (901)
156 TIGR03117 cas_csf4 CRISPR-asso 97.7 9.8E-05 2.1E-09 87.4 8.4 51 292-342 14-70 (636)
157 KOG0952 DNA/RNA helicase MER3/ 97.5 2.8E-05 6.1E-10 93.0 1.2 109 293-402 942-1073(1230)
158 PF06862 DUF1253: Protein of u 97.5 0.013 2.8E-07 66.6 21.9 122 447-580 289-418 (442)
159 PF13245 AAA_19: Part of AAA d 97.3 0.00061 1.3E-08 58.6 6.9 45 294-338 10-62 (76)
160 PF13604 AAA_30: AAA domain; P 97.2 0.0016 3.4E-08 66.6 9.0 108 294-414 18-131 (196)
161 PRK12901 secA preprotein trans 97.1 0.0035 7.7E-08 76.5 12.0 118 447-581 616-745 (1112)
162 PF09848 DUF2075: Uncharacteri 97.0 0.00085 1.8E-08 75.0 5.9 89 295-388 2-97 (352)
163 smart00489 DEXDc3 DEAD-like he 97.0 0.0018 3.9E-08 70.3 8.0 52 291-342 24-85 (289)
164 smart00488 DEXDc2 DEAD-like he 97.0 0.0018 3.9E-08 70.3 8.0 52 291-342 24-85 (289)
165 PF02562 PhoH: PhoH-like prote 96.9 0.0021 4.6E-08 65.9 6.8 112 290-417 15-159 (205)
166 KOG1802 RNA helicase nonsense 96.7 0.0042 9.1E-08 71.7 8.0 61 285-345 416-481 (935)
167 PF07517 SecA_DEAD: SecA DEAD- 96.7 0.0021 4.5E-08 68.6 5.3 110 276-387 73-210 (266)
168 PF13307 Helicase_C_2: Helicas 96.7 0.0042 9.2E-08 61.8 7.0 115 452-574 4-148 (167)
169 PRK11747 dinG ATP-dependent DN 96.5 0.0054 1.2E-07 74.6 8.1 50 287-336 36-96 (697)
170 TIGR01447 recD exodeoxyribonuc 96.5 0.015 3.3E-07 69.0 11.5 122 287-413 153-295 (586)
171 PRK10875 recD exonuclease V su 96.5 0.01 2.2E-07 70.7 9.9 123 286-413 159-301 (615)
172 PRK08074 bifunctional ATP-depe 96.5 0.0037 8.1E-08 78.4 6.3 46 292-337 274-324 (928)
173 COG0653 SecA Preprotein transl 96.4 0.084 1.8E-06 63.9 16.4 113 454-583 425-551 (822)
174 PF13086 AAA_11: AAA domain; P 96.3 0.0062 1.3E-07 62.8 5.9 56 285-340 7-75 (236)
175 PRK10536 hypothetical protein; 96.3 0.011 2.3E-07 62.6 7.6 124 290-417 70-216 (262)
176 TIGR01448 recD_rel helicase, p 96.3 0.019 4.1E-07 70.1 10.8 116 286-413 330-452 (720)
177 COG0553 HepA Superfamily II DN 96.3 0.02 4.4E-07 71.3 11.4 108 460-577 713-822 (866)
178 PRK08074 bifunctional ATP-depe 96.2 0.025 5.3E-07 71.2 11.7 118 454-575 749-892 (928)
179 PF01443 Viral_helicase1: Vira 96.2 0.0058 1.3E-07 63.7 5.1 95 297-415 1-99 (234)
180 PF13401 AAA_22: AAA domain; P 96.1 0.0034 7.3E-08 59.0 2.3 18 293-310 3-20 (131)
181 smart00382 AAA ATPases associa 96.0 0.0028 6E-08 59.0 1.6 38 294-331 2-43 (148)
182 KOG0391 SNF2 family DNA-depend 96.0 0.067 1.4E-06 65.5 13.1 111 457-577 1275-1387(1958)
183 KOG2340 Uncharacterized conser 96.0 0.13 2.7E-06 58.6 14.2 110 459-577 554-668 (698)
184 KOG1803 DNA helicase [Replicat 95.9 0.014 3E-07 67.4 6.4 54 286-339 192-250 (649)
185 COG1199 DinG Rad3-related DNA 95.8 0.069 1.5E-06 64.8 12.5 117 453-575 475-616 (654)
186 COG1199 DinG Rad3-related DNA 95.6 0.014 3E-07 70.7 5.6 49 292-340 32-85 (654)
187 PRK06526 transposase; Provisio 95.3 0.018 3.9E-07 61.3 4.6 44 292-335 96-142 (254)
188 cd01124 KaiC KaiC is a circadi 95.3 0.034 7.3E-07 55.7 6.2 48 297-345 2-53 (187)
189 PRK08181 transposase; Validate 95.3 0.028 6.1E-07 60.3 5.8 45 292-336 104-151 (269)
190 TIGR00376 DNA helicase, putati 95.3 0.034 7.4E-07 66.9 7.1 58 287-344 165-227 (637)
191 PRK04296 thymidine kinase; Pro 95.2 0.008 1.7E-07 61.1 1.2 33 294-326 2-38 (190)
192 cd00009 AAA The AAA+ (ATPases 95.2 0.035 7.6E-07 52.1 5.7 18 293-310 18-35 (151)
193 COG1219 ClpX ATP-dependent pro 95.2 0.007 1.5E-07 64.8 0.8 30 292-321 95-126 (408)
194 PRK11747 dinG ATP-dependent DN 95.2 0.17 3.6E-06 61.8 12.7 114 456-575 533-673 (697)
195 PRK07952 DNA replication prote 95.2 0.05 1.1E-06 57.5 7.2 80 295-394 100-182 (244)
196 PRK12377 putative replication 95.2 0.048 1E-06 57.8 7.1 77 294-391 101-180 (248)
197 COG1484 DnaC DNA replication p 95.1 0.034 7.5E-07 59.2 6.0 79 293-392 104-185 (254)
198 PF13173 AAA_14: AAA domain 95.1 0.095 2E-06 49.5 8.3 91 293-414 1-99 (128)
199 PRK08727 hypothetical protein; 95.1 0.048 1E-06 57.3 6.8 62 295-388 42-107 (233)
200 TIGR00604 rad3 DNA repair heli 95.1 0.039 8.5E-07 67.4 7.0 50 291-340 26-82 (705)
201 KOG0388 SNF2 family DNA-depend 95.0 0.093 2E-06 61.3 9.3 107 458-576 1045-1153(1185)
202 PRK06921 hypothetical protein; 94.9 0.047 1E-06 58.6 6.2 45 293-337 116-164 (266)
203 PF00580 UvrD-helicase: UvrD/R 94.8 0.067 1.4E-06 57.9 7.4 49 293-341 12-68 (315)
204 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.059 1.3E-06 55.8 6.1 19 292-310 36-54 (226)
205 smart00492 HELICc3 helicase su 94.5 0.26 5.6E-06 47.7 9.7 86 485-573 25-135 (141)
206 PRK12723 flagellar biosynthesi 94.4 0.071 1.5E-06 60.1 6.3 85 292-387 172-267 (388)
207 COG3973 Superfamily I DNA and 94.4 0.067 1.4E-06 61.9 6.0 55 290-344 222-286 (747)
208 PRK15483 type III restriction- 94.3 0.1 2.2E-06 64.5 7.7 72 509-589 501-580 (986)
209 PRK08084 DNA replication initi 94.2 0.15 3.2E-06 53.7 8.0 17 294-310 45-61 (235)
210 TIGR03117 cas_csf4 CRISPR-asso 94.2 0.34 7.5E-06 57.9 11.8 120 454-576 467-616 (636)
211 TIGR02768 TraA_Ti Ti-type conj 94.1 0.13 2.7E-06 63.2 8.3 90 286-388 359-453 (744)
212 PRK14974 cell division protein 94.1 0.11 2.3E-06 57.6 6.9 114 294-412 140-261 (336)
213 PRK13889 conjugal transfer rel 94.0 0.21 4.6E-06 62.5 9.9 93 284-389 351-448 (988)
214 KOG0391 SNF2 family DNA-depend 93.9 0.097 2.1E-06 64.2 6.4 117 294-413 634-775 (1958)
215 PF02456 Adeno_IVa2: Adenoviru 93.9 0.077 1.7E-06 56.8 5.0 36 296-332 89-131 (369)
216 PF05970 PIF1: PIF1-like helic 93.6 0.08 1.7E-06 59.5 4.8 43 292-334 20-66 (364)
217 PRK06835 DNA replication prote 93.6 0.17 3.6E-06 56.0 7.2 44 293-336 182-228 (329)
218 KOG1805 DNA replication helica 93.5 0.19 4.1E-06 61.0 7.9 103 286-388 676-810 (1100)
219 PF05496 RuvB_N: Holliday junc 93.5 0.14 3E-06 53.1 5.9 15 296-310 52-66 (233)
220 PRK08116 hypothetical protein; 93.3 0.22 4.8E-06 53.5 7.3 45 294-338 114-161 (268)
221 PRK06893 DNA replication initi 93.2 0.25 5.3E-06 51.8 7.4 32 294-325 39-74 (229)
222 PRK14956 DNA polymerase III su 93.0 0.067 1.5E-06 61.6 3.0 16 296-311 42-57 (484)
223 CHL00181 cbbX CbbX; Provisiona 92.9 0.73 1.6E-05 50.0 10.8 17 294-310 59-75 (287)
224 cd01120 RecA-like_NTPases RecA 92.8 0.14 3E-06 49.4 4.6 31 297-327 2-36 (165)
225 PF00448 SRP54: SRP54-type pro 92.7 0.21 4.5E-06 51.1 5.9 113 295-413 2-123 (196)
226 KOG1015 Transcription regulato 92.7 0.42 9.1E-06 57.8 8.9 84 482-575 1189-1275(1567)
227 PHA02544 44 clamp loader, smal 92.5 0.38 8.2E-06 52.7 8.1 32 296-327 45-77 (316)
228 PHA03311 helicase-primase subu 92.4 0.33 7.1E-06 57.9 7.5 47 292-339 69-115 (828)
229 PRK05642 DNA replication initi 92.3 0.37 7.9E-06 50.7 7.3 37 295-332 46-86 (234)
230 PF02534 T4SS-DNA_transf: Type 92.2 0.12 2.5E-06 60.1 3.8 54 295-348 45-100 (469)
231 KOG0989 Replication factor C, 92.1 0.17 3.8E-06 54.3 4.5 28 375-403 130-157 (346)
232 PF01695 IstB_IS21: IstB-like 92.1 0.25 5.4E-06 49.7 5.5 44 292-335 45-91 (178)
233 PF07728 AAA_5: AAA domain (dy 92.1 0.15 3.3E-06 48.6 3.8 21 296-316 1-23 (139)
234 cd01126 TraG_VirD4 The TraG/Tr 91.7 0.1 2.2E-06 59.0 2.5 54 296-349 1-56 (384)
235 PRK08903 DnaA regulatory inact 91.7 0.36 7.9E-06 50.2 6.4 18 293-310 41-58 (227)
236 COG1875 NYN ribonuclease and A 91.7 0.19 4E-06 55.3 4.2 36 376-415 353-389 (436)
237 PRK13851 type IV secretion sys 91.6 0.14 3E-06 56.9 3.4 41 291-331 159-202 (344)
238 TIGR00604 rad3 DNA repair heli 91.6 1 2.2E-05 55.3 11.1 123 449-574 514-672 (705)
239 smart00491 HELICc2 helicase su 91.5 0.98 2.1E-05 43.7 8.7 79 493-574 30-137 (142)
240 KOG0991 Replication factor C, 91.4 0.19 4.1E-06 51.9 3.7 34 369-404 109-142 (333)
241 PRK12901 secA preprotein trans 91.3 0.24 5.2E-06 61.2 5.1 94 294-387 182-303 (1112)
242 PRK11054 helD DNA helicase IV; 91.3 0.58 1.3E-05 56.9 8.4 70 272-341 187-264 (684)
243 KOG0745 Putative ATP-dependent 91.2 0.12 2.7E-06 57.6 2.4 32 292-323 224-257 (564)
244 TIGR03878 thermo_KaiC_2 KaiC d 91.2 0.65 1.4E-05 49.6 7.9 53 292-344 34-93 (259)
245 PRK13826 Dtr system oriT relax 91.2 0.6 1.3E-05 59.1 8.5 89 287-388 389-482 (1102)
246 TIGR03877 thermo_KaiC_1 KaiC d 91.0 0.38 8.2E-06 50.6 5.8 52 293-345 20-75 (237)
247 TIGR00631 uvrb excinuclease AB 91.0 0.56 1.2E-05 56.7 7.8 46 296-341 31-77 (655)
248 PF06745 KaiC: KaiC; InterPro 91.0 0.37 7.9E-06 50.1 5.6 53 292-345 17-74 (226)
249 PRK00149 dnaA chromosomal repl 91.0 0.3 6.5E-06 56.5 5.4 72 295-388 149-225 (450)
250 TIGR02782 TrbB_P P-type conjug 90.9 0.47 1E-05 51.9 6.5 40 291-330 129-174 (299)
251 PRK00080 ruvB Holliday junctio 90.8 0.45 9.8E-06 52.6 6.4 18 295-312 52-69 (328)
252 PHA03333 putative ATPase subun 90.8 1.3 2.8E-05 52.9 10.2 55 287-341 180-239 (752)
253 PF00004 AAA: ATPase family as 90.7 0.57 1.2E-05 43.5 6.1 14 297-310 1-14 (132)
254 PF13555 AAA_29: P-loop contai 90.5 0.33 7.1E-06 40.0 3.6 26 293-318 22-49 (62)
255 PRK12900 secA preprotein trans 90.4 0.43 9.2E-06 59.0 6.1 92 296-387 153-271 (1025)
256 cd01130 VirB11-like_ATPase Typ 90.4 0.34 7.4E-06 48.9 4.6 20 291-310 22-41 (186)
257 PRK14964 DNA polymerase III su 90.3 0.27 5.9E-06 57.1 4.2 16 295-310 36-51 (491)
258 TIGR00635 ruvB Holliday juncti 90.2 0.52 1.1E-05 51.3 6.2 17 295-311 31-47 (305)
259 COG1474 CDC6 Cdc6-related prot 90.2 0.19 4.2E-06 56.3 2.8 18 293-310 41-58 (366)
260 PRK13833 conjugal transfer pro 90.1 0.51 1.1E-05 52.0 5.9 40 291-330 141-186 (323)
261 TIGR02928 orc1/cdc6 family rep 90.1 0.33 7.3E-06 54.2 4.7 17 294-310 40-56 (365)
262 PRK07764 DNA polymerase III su 90.1 0.22 4.8E-06 61.5 3.4 47 375-422 121-167 (824)
263 PRK14958 DNA polymerase III su 89.8 0.22 4.7E-06 58.4 3.0 15 296-310 40-54 (509)
264 PF00437 T2SE: Type II/IV secr 89.8 0.28 6.1E-06 52.5 3.6 39 292-330 125-167 (270)
265 PRK13897 type IV secretion sys 89.8 0.28 6E-06 58.6 3.8 56 294-349 158-215 (606)
266 PRK14961 DNA polymerase III su 89.7 0.3 6.5E-06 54.9 3.8 16 296-311 40-55 (363)
267 COG1702 PhoH Phosphate starvat 89.5 0.42 9.1E-06 52.3 4.6 65 279-354 128-198 (348)
268 PF05621 TniB: Bacterial TniB 89.5 0.46 9.9E-06 51.5 4.8 88 293-388 60-159 (302)
269 TIGR00362 DnaA chromosomal rep 89.4 0.43 9.3E-06 54.4 4.9 44 295-339 137-186 (405)
270 PRK14960 DNA polymerase III su 89.4 0.28 6E-06 58.5 3.3 17 295-311 38-54 (702)
271 PRK07003 DNA polymerase III su 89.4 0.26 5.7E-06 59.4 3.2 15 296-310 40-54 (830)
272 PRK12323 DNA polymerase III su 89.3 0.29 6.3E-06 58.2 3.5 15 296-310 40-54 (700)
273 TIGR03499 FlhF flagellar biosy 89.3 0.75 1.6E-05 49.8 6.4 47 293-339 193-247 (282)
274 COG2805 PilT Tfp pilus assembl 89.2 0.6 1.3E-05 50.2 5.3 19 292-310 123-141 (353)
275 COG2256 MGS1 ATPase related to 89.1 0.82 1.8E-05 51.0 6.5 68 296-388 50-118 (436)
276 PRK13894 conjugal transfer ATP 89.1 0.57 1.2E-05 51.6 5.4 20 291-310 145-164 (319)
277 TIGR03015 pepcterm_ATPase puta 89.0 0.22 4.9E-06 53.0 2.1 18 294-311 43-60 (269)
278 PRK13900 type IV secretion sys 89.0 0.33 7.1E-06 53.8 3.5 41 291-331 157-200 (332)
279 PLN03025 replication factor C 88.7 1.2 2.6E-05 49.1 7.7 15 296-310 36-50 (319)
280 PF00308 Bac_DnaA: Bacterial d 88.6 1.3 2.7E-05 46.2 7.3 71 295-388 35-111 (219)
281 PRK00411 cdc6 cell division co 88.6 0.6 1.3E-05 52.8 5.3 17 294-310 55-71 (394)
282 PF05707 Zot: Zonular occluden 88.5 0.16 3.4E-06 51.7 0.5 35 296-331 2-40 (193)
283 cd01121 Sms Sms (bacterial rad 88.5 1.4 3E-05 49.7 8.0 51 293-344 81-135 (372)
284 PRK14949 DNA polymerase III su 88.5 0.29 6.3E-06 60.1 2.7 15 296-310 40-54 (944)
285 KOG0058 Peptide exporter, ABC 88.4 0.43 9.4E-06 56.8 4.0 45 292-336 492-541 (716)
286 PRK04195 replication factor C 88.3 1.4 3E-05 51.6 8.1 18 294-311 39-56 (482)
287 PRK12726 flagellar biosynthesi 88.1 2 4.3E-05 48.3 8.8 48 292-339 204-257 (407)
288 PF13871 Helicase_C_4: Helicas 88.1 1.8 3.9E-05 46.5 8.1 56 498-564 52-116 (278)
289 COG2804 PulE Type II secretory 88.0 0.46 1E-05 54.6 3.8 17 294-310 258-274 (500)
290 COG4962 CpaF Flp pilus assembl 87.9 0.45 9.9E-06 52.1 3.5 39 292-330 171-212 (355)
291 PRK12422 chromosomal replicati 87.8 0.9 2E-05 52.5 6.1 71 295-388 142-216 (445)
292 PRK09183 transposase/IS protei 87.7 1 2.3E-05 48.1 6.2 44 292-335 100-146 (259)
293 COG1618 Predicted nucleotide k 87.7 11 0.00024 37.3 12.3 16 295-310 6-21 (179)
294 cd01129 PulE-GspE PulE/GspE Th 87.7 0.66 1.4E-05 49.8 4.6 18 293-310 79-96 (264)
295 PRK05563 DNA polymerase III su 87.5 0.42 9.2E-06 56.8 3.3 17 294-310 38-54 (559)
296 PRK12402 replication factor C 87.5 0.58 1.2E-05 51.5 4.2 15 296-310 38-52 (337)
297 PRK13822 conjugal transfer cou 87.4 0.57 1.2E-05 56.4 4.3 56 294-349 224-281 (641)
298 PRK11823 DNA repair protein Ra 87.4 2 4.3E-05 49.7 8.6 88 292-388 78-170 (446)
299 PRK13342 recombination factor 87.3 1.6 3.6E-05 49.8 7.9 16 296-311 38-53 (413)
300 PRK14962 DNA polymerase III su 87.2 0.55 1.2E-05 54.6 4.0 15 296-310 38-52 (472)
301 PRK06645 DNA polymerase III su 87.2 0.42 9.1E-06 55.9 3.0 16 295-310 44-59 (507)
302 PRK14087 dnaA chromosomal repl 87.2 0.76 1.7E-05 53.1 5.1 74 295-388 142-220 (450)
303 PRK10436 hypothetical protein; 87.2 0.65 1.4E-05 53.8 4.5 19 292-310 216-234 (462)
304 PRK10919 ATP-dependent DNA hel 87.2 1.1 2.3E-05 54.7 6.5 49 293-341 14-70 (672)
305 PRK04328 hypothetical protein; 87.2 1.1 2.3E-05 47.6 5.9 51 293-344 22-76 (249)
306 TIGR03881 KaiC_arch_4 KaiC dom 87.1 1.1 2.4E-05 46.6 5.8 51 293-344 19-73 (229)
307 PTZ00293 thymidine kinase; Pro 87.0 0.71 1.5E-05 47.6 4.2 36 293-328 3-42 (211)
308 PRK13850 type IV secretion sys 87.0 0.63 1.4E-05 56.2 4.4 54 295-348 140-195 (670)
309 COG0467 RAD55 RecA-superfamily 86.9 1 2.2E-05 48.0 5.6 54 293-346 22-78 (260)
310 PF10412 TrwB_AAD_bind: Type I 86.9 0.72 1.6E-05 52.3 4.5 51 286-336 7-61 (386)
311 PF12846 AAA_10: AAA-like doma 86.8 0.67 1.4E-05 49.7 4.1 39 294-332 1-43 (304)
312 PRK14965 DNA polymerase III su 86.8 0.55 1.2E-05 56.1 3.7 16 296-311 40-55 (576)
313 PRK14952 DNA polymerase III su 86.6 0.54 1.2E-05 56.0 3.5 16 296-311 37-52 (584)
314 PRK05973 replicative DNA helic 86.5 1.3 2.7E-05 46.8 5.8 52 292-344 62-117 (237)
315 PRK14712 conjugal transfer nic 86.5 2 4.4E-05 56.3 8.7 92 287-388 843-944 (1623)
316 TIGR01075 uvrD DNA helicase II 86.3 1.2 2.6E-05 54.8 6.4 50 292-341 15-72 (715)
317 COG2812 DnaX DNA polymerase II 86.3 0.32 6.9E-06 56.6 1.3 27 372-402 117-143 (515)
318 TIGR01547 phage_term_2 phage t 86.3 2.6 5.7E-05 47.8 8.8 116 295-414 2-141 (396)
319 TIGR02655 circ_KaiC circadian 86.1 1.1 2.4E-05 52.3 5.7 53 292-345 19-76 (484)
320 TIGR02788 VirB11 P-type DNA tr 85.8 0.65 1.4E-05 50.9 3.4 39 291-329 141-182 (308)
321 cd01131 PilT Pilus retraction 85.7 0.77 1.7E-05 46.9 3.7 15 296-310 3-17 (198)
322 PRK11773 uvrD DNA-dependent he 85.7 1.3 2.8E-05 54.5 6.3 50 292-341 20-77 (721)
323 COG1110 Reverse gyrase [DNA re 85.6 2.2 4.8E-05 52.6 7.9 65 453-519 121-191 (1187)
324 COG1221 PspF Transcriptional r 85.6 1.1 2.4E-05 50.6 5.1 86 292-389 99-188 (403)
325 PHA00350 putative assembly pro 85.5 3 6.6E-05 47.2 8.6 28 296-323 3-34 (399)
326 PF05127 Helicase_RecD: Helica 85.5 0.22 4.7E-06 50.0 -0.5 43 298-340 1-48 (177)
327 PRK14953 DNA polymerase III su 85.5 0.71 1.5E-05 53.9 3.7 15 296-310 40-54 (486)
328 PRK14951 DNA polymerase III su 85.2 0.68 1.5E-05 55.4 3.4 15 296-310 40-54 (618)
329 TIGR02760 TraI_TIGR conjugativ 85.2 2 4.3E-05 58.3 8.0 52 287-338 437-494 (1960)
330 TIGR02767 TraG-Ti Ti-type conj 85.1 0.89 1.9E-05 54.5 4.3 54 295-348 212-268 (623)
331 PF02689 Herpes_Helicase: Heli 85.1 2.4 5.2E-05 50.9 7.7 45 294-339 59-103 (818)
332 PTZ00112 origin recognition co 85.0 1.5 3.3E-05 53.7 6.1 15 296-310 783-797 (1164)
333 PRK11889 flhF flagellar biosyn 84.9 1.9 4E-05 48.8 6.4 87 293-387 240-333 (436)
334 COG1419 FlhF Flagellar GTP-bin 84.9 1.7 3.6E-05 49.0 6.0 55 292-346 201-264 (407)
335 PRK13709 conjugal transfer nic 84.8 2.9 6.4E-05 55.6 9.1 93 286-388 974-1076(1747)
336 PRK12724 flagellar biosynthesi 84.8 1.8 3.8E-05 49.3 6.2 52 292-343 221-280 (432)
337 cd01127 TrwB Bacterial conjuga 84.7 0.82 1.8E-05 52.3 3.7 47 287-333 35-85 (410)
338 PRK13700 conjugal transfer pro 84.7 1.3 2.8E-05 53.4 5.4 66 270-335 159-230 (732)
339 TIGR00064 ftsY signal recognit 84.7 1.9 4.1E-05 46.5 6.2 50 293-342 71-127 (272)
340 COG3587 Restriction endonuclea 84.6 0.94 2E-05 54.7 4.1 76 508-592 482-568 (985)
341 PRK05703 flhF flagellar biosyn 84.6 1.9 4.2E-05 49.4 6.7 53 292-344 219-280 (424)
342 PRK05580 primosome assembly pr 84.6 3.3 7.2E-05 50.5 9.0 74 459-535 192-267 (679)
343 PRK10416 signal recognition pa 84.5 1.8 3.9E-05 47.7 6.1 46 293-338 113-164 (318)
344 PRK14969 DNA polymerase III su 84.4 0.63 1.4E-05 54.9 2.6 15 296-310 40-54 (527)
345 TIGR01420 pilT_fam pilus retra 84.3 1.3 2.9E-05 49.3 5.1 19 292-310 120-138 (343)
346 PRK14086 dnaA chromosomal repl 84.2 2.6 5.6E-05 50.3 7.5 71 296-388 316-391 (617)
347 TIGR00595 priA primosomal prot 84.2 3 6.6E-05 49.0 8.1 74 459-535 27-102 (505)
348 cd00544 CobU Adenosylcobinamid 84.1 1.5 3.2E-05 43.7 4.8 44 297-340 2-46 (169)
349 PRK08691 DNA polymerase III su 84.0 0.68 1.5E-05 55.7 2.7 17 295-311 39-55 (709)
350 TIGR02538 type_IV_pilB type IV 83.8 1.1 2.4E-05 53.4 4.4 18 293-310 315-332 (564)
351 PF00265 TK: Thymidine kinase; 83.8 1.5 3.2E-05 44.1 4.7 35 294-328 1-39 (176)
352 PRK14722 flhF flagellar biosyn 83.8 2 4.2E-05 48.4 6.0 83 292-386 135-227 (374)
353 PRK13341 recombination factor 83.7 2.4 5.2E-05 51.9 7.2 16 295-310 53-68 (725)
354 PRK14950 DNA polymerase III su 83.6 1.1 2.4E-05 53.6 4.3 16 295-310 39-54 (585)
355 COG2255 RuvB Holliday junction 83.6 2.2 4.7E-05 45.8 5.9 17 295-311 53-69 (332)
356 PRK14729 miaA tRNA delta(2)-is 83.6 1.1 2.3E-05 49.0 3.7 24 294-317 4-27 (300)
357 PRK14963 DNA polymerase III su 83.4 2.6 5.7E-05 49.5 7.1 15 296-310 38-52 (504)
358 PRK07994 DNA polymerase III su 83.4 0.8 1.7E-05 55.0 2.9 14 297-310 41-54 (647)
359 PRK06067 flagellar accessory p 83.4 2.2 4.7E-05 44.7 5.9 52 293-345 24-79 (234)
360 PRK04841 transcriptional regul 83.3 2.3 5.1E-05 53.4 7.2 34 292-325 30-63 (903)
361 TIGR01074 rep ATP-dependent DN 83.2 2.2 4.9E-05 51.9 6.8 49 293-341 13-69 (664)
362 COG0470 HolB ATPase involved i 83.1 3.1 6.8E-05 45.3 7.3 16 296-311 26-41 (325)
363 PF12340 DUF3638: Protein of u 83.0 1.8 4E-05 45.1 5.0 49 293-341 40-92 (229)
364 cd00984 DnaB_C DnaB helicase C 83.0 2.4 5.3E-05 44.3 6.2 44 292-335 11-62 (242)
365 PHA03368 DNA packaging termina 83.0 7 0.00015 46.8 10.2 127 263-391 224-369 (738)
366 TIGR02688 conserved hypothetic 83.0 2.3 4.9E-05 48.4 6.1 21 290-310 205-225 (449)
367 COG0630 VirB11 Type IV secreto 82.9 1.5 3.4E-05 48.1 4.8 54 277-330 125-182 (312)
368 KOG0388 SNF2 family DNA-depend 82.9 3 6.5E-05 49.4 7.0 119 293-413 585-733 (1185)
369 PRK13876 conjugal transfer cou 82.8 1.2 2.5E-05 53.9 4.0 69 274-342 118-194 (663)
370 PRK14957 DNA polymerase III su 82.8 0.94 2E-05 53.5 3.2 15 296-310 40-54 (546)
371 PRK05896 DNA polymerase III su 82.7 1.2 2.6E-05 52.9 4.0 17 295-311 39-55 (605)
372 PRK08533 flagellar accessory p 82.5 2.3 5E-05 44.5 5.7 52 292-344 22-77 (230)
373 PRK10867 signal recognition pa 82.4 2.3 5E-05 48.9 6.0 51 294-344 100-158 (433)
374 TIGR02533 type_II_gspE general 82.3 1.1 2.4E-05 52.3 3.5 17 294-310 242-258 (486)
375 PF01745 IPT: Isopentenyl tran 82.2 1.4 3.1E-05 45.3 3.8 30 296-325 3-32 (233)
376 TIGR03880 KaiC_arch_3 KaiC dom 82.1 2.5 5.3E-05 43.9 5.7 51 293-344 15-69 (224)
377 COG0466 Lon ATP-dependent Lon 81.8 2.9 6.3E-05 50.0 6.6 89 291-402 347-444 (782)
378 PRK08939 primosomal protein Dn 81.7 2.5 5.3E-05 46.4 5.8 78 293-392 155-235 (306)
379 PRK10917 ATP-dependent DNA hel 81.6 5.9 0.00013 48.4 9.6 76 460-537 313-394 (681)
380 PF01935 DUF87: Domain of unkn 81.5 1.6 3.4E-05 45.4 4.0 38 292-329 21-63 (229)
381 PRK11034 clpA ATP-dependent Cl 81.4 14 0.00029 45.8 12.4 18 293-310 206-223 (758)
382 PRK07133 DNA polymerase III su 81.3 1.4 3.1E-05 53.4 4.0 16 296-311 42-57 (725)
383 PRK09111 DNA polymerase III su 81.1 1.4 3.1E-05 52.6 3.9 16 295-310 47-62 (598)
384 KOG1015 Transcription regulato 81.0 4.2 9E-05 49.8 7.5 44 375-420 822-866 (1567)
385 PRK05800 cobU adenosylcobinami 80.9 2.4 5.1E-05 42.4 4.8 46 295-340 2-48 (170)
386 PLN02165 adenylate isopentenyl 80.9 1.7 3.6E-05 48.0 4.0 22 292-313 41-62 (334)
387 KOG2227 Pre-initiation complex 80.9 2.1 4.5E-05 48.7 4.8 128 292-426 173-309 (529)
388 TIGR01425 SRP54_euk signal rec 80.8 3 6.5E-05 47.8 6.1 47 294-340 100-152 (429)
389 TIGR02524 dot_icm_DotB Dot/Icm 80.7 1.4 3E-05 49.4 3.4 19 292-310 132-150 (358)
390 TIGR03743 SXT_TraD conjugative 80.7 2.7 5.8E-05 50.8 6.0 52 293-344 175-232 (634)
391 PRK06995 flhF flagellar biosyn 80.6 3 6.5E-05 48.5 6.2 48 293-340 255-310 (484)
392 PF13207 AAA_17: AAA domain; P 80.6 1.2 2.7E-05 41.0 2.6 14 297-310 2-15 (121)
393 TIGR02639 ClpA ATP-dependent C 80.5 11 0.00023 46.6 11.4 18 293-310 202-219 (731)
394 PRK10865 protein disaggregatio 80.5 3.6 7.9E-05 51.5 7.3 17 294-310 199-215 (857)
395 TIGR00678 holB DNA polymerase 80.5 8.4 0.00018 38.7 8.8 16 295-310 15-30 (188)
396 PF12775 AAA_7: P-loop contain 80.3 1.4 3.1E-05 47.4 3.3 25 291-315 30-54 (272)
397 TIGR02785 addA_Gpos recombinat 80.3 3.6 7.9E-05 53.6 7.5 50 292-341 12-68 (1232)
398 TIGR02397 dnaX_nterm DNA polym 80.3 6.5 0.00014 43.6 8.7 16 295-310 37-52 (355)
399 PRK14955 DNA polymerase III su 80.1 1.3 2.8E-05 50.4 3.0 16 296-311 40-55 (397)
400 PF03354 Terminase_1: Phage Te 80.0 7.7 0.00017 45.3 9.4 47 295-341 23-77 (477)
401 KOG1969 DNA replication checkp 79.8 16 0.00034 44.1 11.6 27 294-320 326-352 (877)
402 cd02023 UMPK Uridine monophosp 79.6 2.1 4.5E-05 43.5 4.1 25 297-321 2-28 (198)
403 TIGR00959 ffh signal recogniti 79.6 3.2 7E-05 47.6 6.0 50 295-344 100-157 (428)
404 PRK00771 signal recognition pa 79.5 3.5 7.7E-05 47.4 6.3 52 293-344 94-152 (437)
405 COG0552 FtsY Signal recognitio 79.5 2.1 4.6E-05 46.9 4.2 90 295-388 140-235 (340)
406 cd00983 recA RecA is a bacter 79.5 4.1 8.8E-05 45.0 6.5 49 293-344 54-106 (325)
407 TIGR00596 rad1 DNA repair prot 79.5 9.4 0.0002 47.4 10.2 14 514-527 431-444 (814)
408 TIGR02759 TraD_Ftype type IV c 79.5 2.9 6.2E-05 49.9 5.7 38 291-328 173-214 (566)
409 TIGR02525 plasmid_TraJ plasmid 79.3 2.2 4.8E-05 48.0 4.5 18 293-310 148-165 (372)
410 PRK13764 ATPase; Provisional 79.1 2.2 4.8E-05 50.9 4.6 39 292-330 255-297 (602)
411 PRK14873 primosome assembly pr 79.1 6.6 0.00014 47.7 8.7 73 459-534 190-265 (665)
412 TIGR02655 circ_KaiC circadian 79.1 2.9 6.3E-05 48.9 5.6 53 292-345 261-317 (484)
413 TIGR03819 heli_sec_ATPase heli 79.0 2.4 5.1E-05 47.3 4.5 40 291-330 175-217 (340)
414 cd01394 radB RadB. The archaea 78.9 3.1 6.7E-05 42.9 5.2 34 292-325 17-54 (218)
415 KOG0741 AAA+-type ATPase [Post 78.8 4.7 0.0001 46.6 6.7 26 293-318 255-282 (744)
416 PRK07940 DNA polymerase III su 78.8 5.7 0.00012 45.2 7.6 18 294-311 36-53 (394)
417 PRK14959 DNA polymerase III su 78.7 1.7 3.7E-05 51.9 3.5 16 296-311 40-55 (624)
418 TIGR02760 TraI_TIGR conjugativ 78.7 7.7 0.00017 52.8 9.9 91 287-389 1027-1127(1960)
419 TIGR01073 pcrA ATP-dependent D 78.6 3.7 8E-05 50.6 6.5 49 293-341 16-72 (726)
420 TIGR00235 udk uridine kinase. 78.5 2 4.4E-05 44.0 3.6 25 293-317 5-31 (207)
421 PRK13880 conjugal transfer cou 78.5 1.5 3.2E-05 53.0 2.9 52 295-346 176-230 (636)
422 PF13177 DNA_pol3_delta2: DNA 78.5 6 0.00013 39.0 6.8 17 295-311 20-36 (162)
423 PRK08451 DNA polymerase III su 78.4 1.4 3.1E-05 51.8 2.7 15 296-310 38-52 (535)
424 KOG2373 Predicted mitochondria 78.1 3.4 7.3E-05 45.3 5.1 46 294-339 273-325 (514)
425 PRK12727 flagellar biosynthesi 78.1 14 0.0003 43.5 10.5 47 292-338 348-402 (559)
426 KOG2228 Origin recognition com 78.0 8.4 0.00018 42.4 8.1 50 292-341 47-110 (408)
427 TIGR02640 gas_vesic_GvpN gas v 78.0 4.3 9.4E-05 43.4 6.1 20 291-310 18-37 (262)
428 PRK06647 DNA polymerase III su 78.0 2.1 4.5E-05 50.9 4.0 16 295-310 39-54 (563)
429 TIGR02237 recomb_radB DNA repa 78.0 2.6 5.6E-05 43.1 4.2 35 292-326 10-48 (209)
430 PF13238 AAA_18: AAA domain; P 77.9 1.6 3.5E-05 40.3 2.4 14 297-310 1-14 (129)
431 PF00154 RecA: recA bacterial 77.8 6.7 0.00015 43.2 7.5 49 294-345 53-105 (322)
432 PRK00440 rfc replication facto 77.6 5.8 0.00013 43.1 7.1 15 296-310 40-54 (319)
433 TIGR03346 chaperone_ClpB ATP-d 77.5 12 0.00026 47.1 10.6 18 293-310 193-210 (852)
434 PF13671 AAA_33: AAA domain; P 77.4 3 6.6E-05 39.4 4.3 15 297-311 2-16 (143)
435 PRK06731 flhF flagellar biosyn 77.4 4.5 9.7E-05 43.5 5.9 87 293-387 74-167 (270)
436 COG0553 HepA Superfamily II DN 77.2 3.7 8E-05 51.2 6.1 118 293-413 357-510 (866)
437 COG5008 PilU Tfp pilus assembl 77.2 1.4 3.1E-05 46.5 2.0 36 467-503 212-248 (375)
438 PRK14530 adenylate kinase; Pro 77.0 1.7 3.6E-05 44.9 2.5 19 292-310 1-19 (215)
439 PRK00091 miaA tRNA delta(2)-is 76.9 2.7 5.9E-05 46.1 4.2 19 294-312 4-22 (307)
440 PRK06305 DNA polymerase III su 76.7 2.1 4.5E-05 49.6 3.4 16 295-310 40-55 (451)
441 PRK14948 DNA polymerase III su 76.3 2.2 4.8E-05 51.3 3.6 16 295-310 39-54 (620)
442 PF03193 DUF258: Protein of un 76.3 4.4 9.6E-05 40.1 5.1 41 270-310 4-51 (161)
443 PRK15455 PrkA family serine pr 76.2 3.9 8.5E-05 48.3 5.4 53 251-316 71-127 (644)
444 PRK05298 excinuclease ABC subu 76.1 4.8 0.0001 48.9 6.4 46 296-341 34-80 (652)
445 PRK05480 uridine/cytidine kina 76.1 3.1 6.8E-05 42.6 4.2 24 293-316 5-30 (209)
446 TIGR02012 tigrfam_recA protein 76.1 4.6 9.9E-05 44.5 5.7 49 293-344 54-106 (321)
447 TIGR03754 conj_TOL_TraD conjug 76.1 5.1 0.00011 48.1 6.4 52 293-344 179-236 (643)
448 cd03115 SRP The signal recogni 76.0 4.5 9.8E-05 39.9 5.2 37 296-332 2-44 (173)
449 COG4128 Zot Zonula occludens t 76.0 5 0.00011 43.0 5.6 33 297-330 4-40 (398)
450 PF01580 FtsK_SpoIIIE: FtsK/Sp 75.9 3.2 7E-05 42.3 4.2 24 294-317 38-64 (205)
451 PRK09354 recA recombinase A; P 75.8 5.8 0.00013 44.2 6.4 49 293-344 59-111 (349)
452 cd00071 GMPK Guanosine monopho 75.5 2.4 5.2E-05 40.6 3.0 14 297-310 2-15 (137)
453 TIGR02868 CydC thiol reductant 75.5 2.5 5.5E-05 49.8 3.8 28 291-318 358-387 (529)
454 PRK00300 gmk guanylate kinase; 75.5 2.6 5.6E-05 42.9 3.4 19 292-310 3-21 (205)
455 COG1074 RecB ATP-dependent exo 75.3 4.3 9.4E-05 52.5 6.0 50 292-341 14-72 (1139)
456 TIGR02030 BchI-ChlI magnesium 75.2 3.8 8.2E-05 45.6 4.8 34 294-327 25-60 (337)
457 PF00625 Guanylate_kin: Guanyl 75.0 3.5 7.6E-05 41.3 4.1 19 293-311 1-19 (183)
458 PRK09519 recA DNA recombinatio 74.7 3.4 7.4E-05 50.6 4.6 89 293-387 59-151 (790)
459 PRK09361 radB DNA repair and r 74.7 5.6 0.00012 41.2 5.7 33 293-325 22-58 (225)
460 COG1444 Predicted P-loop ATPas 74.6 14 0.0003 45.1 9.5 92 294-387 231-336 (758)
461 COG1136 SalX ABC-type antimicr 74.6 2.5 5.5E-05 44.1 3.0 20 291-310 28-47 (226)
462 TIGR03263 guanyl_kin guanylate 74.5 2.1 4.6E-05 42.5 2.4 17 294-310 1-17 (180)
463 PRK08233 hypothetical protein; 74.2 3.5 7.6E-05 40.8 3.9 18 293-310 2-19 (182)
464 COG1126 GlnQ ABC-type polar am 74.1 2.4 5.2E-05 43.8 2.6 27 291-317 25-53 (240)
465 TIGR02236 recomb_radA DNA repa 73.8 3.8 8.2E-05 44.9 4.3 33 293-325 94-136 (310)
466 KOG1016 Predicted DNA helicase 73.8 8.6 0.00019 46.2 7.2 82 485-576 765-848 (1387)
467 TIGR03345 VI_ClpV1 type VI sec 73.4 3.6 7.7E-05 51.5 4.5 17 294-310 208-224 (852)
468 TIGR00041 DTMP_kinase thymidyl 73.1 6 0.00013 39.8 5.4 18 293-310 2-19 (195)
469 PRK05707 DNA polymerase III su 73.0 8.9 0.00019 42.5 7.0 15 296-310 24-38 (328)
470 PF03237 Terminase_6: Terminas 72.9 14 0.00031 40.5 8.8 37 298-334 1-43 (384)
471 TIGR02322 phosphon_PhnN phosph 72.8 3 6.5E-05 41.5 3.0 17 294-310 1-17 (179)
472 KOG0742 AAA+-type ATPase [Post 72.7 2 4.4E-05 47.9 1.8 17 295-311 385-401 (630)
473 PF13481 AAA_25: AAA domain; P 72.5 6.8 0.00015 39.2 5.6 49 293-342 31-93 (193)
474 PRK09302 circadian clock prote 72.2 7 0.00015 46.0 6.4 52 293-345 30-86 (509)
475 PF13872 AAA_34: P-loop contai 72.1 13 0.00028 40.5 7.7 52 293-344 61-117 (303)
476 PRK09302 circadian clock prote 71.8 7.2 0.00016 45.9 6.4 52 293-345 272-327 (509)
477 cd01122 GP4d_helicase GP4d_hel 71.6 6.2 0.00013 42.0 5.3 48 291-339 27-79 (271)
478 PLN02748 tRNA dimethylallyltra 71.6 4.4 9.6E-05 46.9 4.4 21 292-312 20-40 (468)
479 PRK14971 DNA polymerase III su 71.5 3.5 7.6E-05 49.6 3.7 16 295-310 40-55 (614)
480 PF05729 NACHT: NACHT domain 71.5 5.2 0.00011 38.5 4.3 16 295-310 1-16 (166)
481 TIGR00174 miaA tRNA isopenteny 70.8 4.2 9.1E-05 44.1 3.7 18 297-314 2-19 (287)
482 PRK04301 radA DNA repair and r 70.7 4.9 0.00011 44.2 4.3 33 293-325 101-143 (317)
483 PRK10078 ribose 1,5-bisphospho 70.7 2.9 6.3E-05 42.1 2.4 17 294-310 2-18 (186)
484 PRK08118 topology modulation p 70.6 3 6.5E-05 41.4 2.4 15 296-310 3-17 (167)
485 PF09439 SRPRB: Signal recogni 70.5 3.4 7.4E-05 41.7 2.8 23 293-315 2-24 (181)
486 TIGR03345 VI_ClpV1 type VI sec 70.4 6.7 0.00015 49.1 5.9 31 296-326 598-631 (852)
487 PRK08769 DNA polymerase III su 70.3 23 0.0005 39.1 9.4 15 296-310 28-42 (319)
488 PHA00729 NTP-binding motif con 70.3 8 0.00017 40.4 5.5 15 296-310 19-33 (226)
489 CHL00095 clpC Clp protease ATP 70.2 27 0.00059 43.7 11.2 130 293-454 199-355 (821)
490 PRK00131 aroK shikimate kinase 70.1 3.4 7.3E-05 40.5 2.7 19 292-310 2-20 (175)
491 PF13191 AAA_16: AAA ATPase do 70.1 5.2 0.00011 39.5 4.0 19 292-310 22-40 (185)
492 COG0324 MiaA tRNA delta(2)-iso 70.0 5 0.00011 43.8 4.1 20 294-313 3-22 (308)
493 PRK10787 DNA-binding ATP-depen 70.0 8.8 0.00019 47.6 6.7 18 293-310 348-365 (784)
494 PRK10865 protein disaggregatio 70.0 4.8 0.0001 50.5 4.5 36 296-331 600-638 (857)
495 PRK14723 flhF flagellar biosyn 70.0 7.6 0.00016 47.6 6.0 38 487-525 458-498 (767)
496 PRK05541 adenylylsulfate kinas 69.9 6.8 0.00015 38.9 4.8 19 292-310 5-23 (176)
497 PHA02533 17 large terminase pr 69.6 20 0.00044 42.4 9.4 49 293-341 73-127 (534)
498 TIGR01243 CDC48 AAA family ATP 69.6 9.2 0.0002 47.2 6.8 18 293-310 211-228 (733)
499 cd01125 repA Hexameric Replica 69.5 10 0.00022 39.8 6.3 21 294-314 1-21 (239)
500 TIGR02974 phageshock_pspF psp 69.5 7.5 0.00016 43.1 5.5 19 292-310 20-38 (329)
No 1
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.7e-89 Score=740.75 Aligned_cols=568 Identities=50% Similarity=0.841 Sum_probs=530.8
Q ss_pred hhhhchhHHhHHHHhhcCCCCCCChhhhHHHHhhhcCChhHH---HHHHHcCCCchhhhhhhhhhHhhhcccCchHHHHH
Q 003593 194 FFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVA---QYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRF 270 (808)
Q Consensus 194 ~f~~~~~~~~~~~~~~i~~~~~p~~~~~f~~~~~~~~~~~i~---~~l~~~~~~~~~~~~~~p~f~~~~~~~fp~~l~~i 270 (808)
.|...+.+.......++....++....+|+.+|.+.....+. ....++..+......++|.|.++....|| .+.+.
T Consensus 89 ~~~~rk~~~~l~~~~g~~~~~~~~~~~sf~~~~~~~~~l~~~~l~i~~~di~~g~~~~~~lfp~f~~~~k~~fp-~l~~~ 167 (700)
T KOG0953|consen 89 KFQVRKDWTSLPSVYGFDLPLFPAAFISFRIYCNKSEFLDVDSLHILTNDIRKGAKDIDFLFPFFLRHAKQEFP-ELTRM 167 (700)
T ss_pred HHHHhHHHHhhccccccccccchhhhHHHHHHhcchhccccchhhhhhhhhhcCCCchhhhhhHHHHHHHHHhc-ccccc
Confidence 344444443344445667778899999999998876655443 23456777888889999999999999999 66666
Q ss_pred HHHHHHCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHHHHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccccccccc
Q 003593 271 RAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTG 350 (808)
Q Consensus 271 ~~~l~~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g 350 (808)
-+.-+..+++.|..|+|.++.+.++.++++|||+||||+-+|+.+.+.+.++|+.|+|.||.++++++++.|++|.++||
T Consensus 168 Ddl~~isDLt~P~~WyP~AR~~~RkIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TG 247 (700)
T KOG0953|consen 168 DDLKKISDLTNPANWYPEARKIRRKIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTG 247 (700)
T ss_pred hhhhhhhccCCCcccCchhHhhhheEEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCcccccc
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc----CCeEEEeeecccCCCceeEEEEccchhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhc
Q 003593 351 QEKKLVPF----SNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET 426 (808)
Q Consensus 351 ~~~~~~~~----~~~i~~t~e~l~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~ 426 (808)
++...... +.++.||+||++....+++.||||+|+|.|..+||+|+++++|+.++++|+|+.|.+++++++++..+
T Consensus 248 eE~~~~~~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~T 327 (700)
T KOG0953|consen 248 EERRFVLDNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMT 327 (700)
T ss_pred ceeeecCCCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhc
Confidence 99886654 78999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEechhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 003593 427 GDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506 (808)
Q Consensus 427 ~~~~~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~ 506 (808)
++++.++.|+|+.|+.+.. .+++.+.+..+|+|||+||++++..+...+++..+.+++++||+|||+.|.++...|+++
T Consensus 328 Gd~vev~~YeRl~pL~v~~-~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~ 406 (700)
T KOG0953|consen 328 GDDVEVREYERLSPLVVEE-TALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDP 406 (700)
T ss_pred CCeeEEEeecccCcceehh-hhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCC
Confidence 9999999999999999887 788999999999999999999999999999998777899999999999999999999999
Q ss_pred CCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHhc
Q 003593 507 DNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586 (808)
Q Consensus 507 ~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~ 586 (808)
+++++||||||++|||+|++|++||++++.||+|++..+.+..+..|++|||||.|..++.|.+++|..+|...+++.|+
T Consensus 407 ~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~ 486 (700)
T KOG0953|consen 407 SNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILK 486 (700)
T ss_pred CCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCCcccCCcchHHHHHHHHHHhcCCChhhhhhhcCCC
Q 003593 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAP 666 (808)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~l~~~~~l~~~d~~~~c~~p 666 (808)
.+.+++..+++.|+.++++.|+.++++..++.|++.|...++.++.|++|+.++.+.+|.+|++++ |++.|++.||.+|
T Consensus 487 ~p~epi~~agl~pt~eqie~fa~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~-L~l~dr~~fc~aP 565 (700)
T KOG0953|consen 487 RPVEPIKNAGLWPTDEQIELFAYHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIE-LPLKDRYKFCTAP 565 (700)
T ss_pred CCchHHHhccCCccHHHHHHHHHhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCC-cchhhhheeecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred CCCCchHHHHHHHHHHhHccCCceEE-----eecCCCCCCCCChhhHHHHHHHhhHhhhhhhhhcccCcccCCchHHHHH
Q 003593 667 VNIRDPKAMYHLLRFASSYSKNAPVS-----IAMGMPKGSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEA 741 (808)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~v~-----il~~~~~~~~~~~~~l~~le~~~~~l~~y~wl~~~~~~~~f~~~~~~~~ 741 (808)
++.+++.+.++|+++|+.|++++++. ..+|+|..++++..+|..||..|+.|++|+|||+||| +.||+++.+++
T Consensus 566 vnk~~p~v~~~f~kfa~~~s~~~~l~~~~l~~~~~~p~~~p~t~~~L~~LEs~h~il~lYmWlS~Rfp-d~fpd~~~vrd 644 (700)
T KOG0953|consen 566 VNKKMPRVCSAFLKFARQYSQNEPLTFLWLKFNLGWPNKIPKTIYELEDLESLHDILDLYMWLSNRFP-DMFPDAESVRD 644 (700)
T ss_pred ccccCchHHHHHHHHHHHHhcCCcccHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhhhh-hhccChHHHHH
Confidence 99999999999999999999999999 4689999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhhccCCchhhhh
Q 003593 742 MATDIAELLGQSLTNANWKPESRQ 765 (808)
Q Consensus 742 ~~~~~~~~~~~~l~~~~~~~~~~~ 765 (808)
++..++..|.+.+.++.+..++..
T Consensus 645 ~~~~ld~ii~egv~~~~k~~~~~e 668 (700)
T KOG0953|consen 645 LKKELDEIIQEGVSKLTKLLKAHE 668 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 999999999999999887766543
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-54 Score=490.38 Aligned_cols=460 Identities=18% Similarity=0.213 Sum_probs=335.2
Q ss_pred CCCC--CCcchhhhHHHhCCCeEEEEecCCCcHHHH-HHHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccccc
Q 003593 277 ADLT--KPHTWFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEK 353 (808)
Q Consensus 277 ~g~~--~pt~~~~i~~~l~grdvlv~apTGSGKTl~-~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~ 353 (808)
.||. +|-++..|..++.|+|+++++|||+|||+| ++++++..|.+|||+|+.+||.+|++.++..|+.+..+++...
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~ 92 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLS 92 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeehhhcccC
Confidence 4444 333455677789999999999999999999 8999999999999999999999999999999999888877644
Q ss_pred cccc----------cCCeEEEeeecccCCCc--------eeEEEEccchhhhcccchhHHHHHHhhcccc--------ce
Q 003593 354 KLVP----------FSNHIACTVEMVSTDEM--------YDVAVIDEIQMMSDACRGYAWTRALLGLMAD--------EI 407 (808)
Q Consensus 354 ~~~~----------~~~~i~~t~e~l~~~~l--------v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~--------~i 407 (808)
.... .-..++.+||.+..+.. +.++|||||||+++ |||+||+.|..+... .+
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSq--WGhdFRP~Y~~lg~l~~~~~~~p~~ 170 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQ--WGHDFRPDYRRLGRLRAGLPNPPVL 170 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhh--cCCccCHhHHHHHHHHhhCCCCCEE
Confidence 3221 13456777877765543 89999999999998 999999988666432 22
Q ss_pred ec--cCCchHHHHHHHHhhhcCCCcEEEEeeecchhhh-h-----HHHHHHHHh---hcCCC-CEEEEechhHHHHHHHH
Q 003593 408 HL--CGDPSVLDVVRKICSETGDELHEQHYERFKPLVV-E-----AKTLLGDLR---NVRSG-DCVVAFSRREIFEVKMA 475 (808)
Q Consensus 408 ~l--~~s~~~~~~i~~l~~~~~~~~~~~~~~r~~~~~~-~-----~~~ll~~l~---~~~~g-~~II~fsrk~~~~l~~~ 475 (808)
.+ ++++.+...+...+.......+...++|.+-... . ..++. .+. ....+ .+|+|.||+.++.++..
T Consensus 171 AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~ 249 (590)
T COG0514 171 ALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEW 249 (590)
T ss_pred EEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHH
Confidence 33 4566666666665555555677888887664221 1 12333 333 23333 45666689999999999
Q ss_pred HHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHH
Q 003593 476 IEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQI 554 (808)
Q Consensus 476 L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr 554 (808)
|.+. |+++..|||||+.++|..++++|.. ++++|||||.|||||||+| ||+||||++ |.|+++|+|+
T Consensus 250 L~~~-g~~a~~YHaGl~~~eR~~~q~~f~~--~~~~iiVAT~AFGMGIdKpdVRfViH~~l---------P~s~EsYyQE 317 (590)
T COG0514 250 LRKN-GISAGAYHAGLSNEERERVQQAFLN--DEIKVMVATNAFGMGIDKPDVRFVIHYDL---------PGSIESYYQE 317 (590)
T ss_pred HHHC-CCceEEecCCCCHHHHHHHHHHHhc--CCCcEEEEeccccCccCCCCceEEEEecC---------CCCHHHHHHH
Confidence 9987 9999999999999999999999975 9999999999999999998 999999999 9999999999
Q ss_pred hCccCCCCCCCCceEEEEEecCC-HHHHHHHhcCCch-hhHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCC
Q 003593 555 AGRAGRRGSIYPDGLTTTLNLDD-LDYLIECLKQPFE-VVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS 632 (808)
Q Consensus 555 ~GRAGR~G~~~~~G~~i~l~~~d-~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~ 632 (808)
+|||||+|. ...|++|+++. ......+++...+ ...+......+.+|..||+... |++..+|.|||+. ..
T Consensus 318 ~GRAGRDG~---~a~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~kl~~~~~~~e~~~-crr~~ll~yfge~-~~--- 389 (590)
T COG0514 318 TGRAGRDGL---PAEAILLYSPEDIRWQRYLIEQSKPDEEQKQIELAKLRQMIAYCETQT-CRRLVLLKYFGED-EP--- 389 (590)
T ss_pred HhhccCCCC---cceEEEeeccccHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccc-chHHHHHHhcCcc-cc---
Confidence 999999999 89999999854 4445556655332 2222222457788999999844 9999999999987 22
Q ss_pred cccCCcchHHHHHHHHHHhcCCChhhhhhhcCCCCCCCc-----hHHHHHHHHHHhHccCCceEEeecCCCCCCCCChhh
Q 003593 633 YFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGSAKNDAE 707 (808)
Q Consensus 633 ~~~c~~~~~~~~a~~l~~~~~l~~~d~~~~c~~p~~~~~-----~~~~~~~~~~~~~~~~~~~v~il~~~~~~~~~~~~~ 707 (808)
..|. .|++|..|....| ++.++++.+..+++|.++.+++++|+... +
T Consensus 390 -~~c~---------------------~c~~c~~~~~~~d~t~~a~~~ls~~~r~~~~~~~~~~~~~l~g~~~~------~ 441 (590)
T COG0514 390 -EPCG---------------------NCDNCLDTPKQFDGTIEAQKVLSCIYRMGQRFGVGYVIDVLRGSKNL------K 441 (590)
T ss_pred -cccc---------------------CCCcccCcchhcchHHHHHHHHHhHhhhhhhhhHHHHHHHHhcccch------h
Confidence 1576 6999999998777 78999999999999999999999888431 1
Q ss_pred HHHHHHHhhHhhhhhhh---------------------hcccCcccCCchHHHHHHHHHHHHHHHHhhhccCCchhhhhh
Q 003593 708 LLDLETKHQVLSMYLWL---------------------SHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQA 766 (808)
Q Consensus 708 l~~le~~~~~l~~y~wl---------------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 766 (808)
+ ....|+.+++||-. ..... . |........+. .+ ..-.++..+.. +
T Consensus 442 ~--~~~~~~~l~~~G~~k~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~l~l~~~~~~----vl-~ge~~~~l~~~---~ 508 (590)
T COG0514 442 I--RLLGHEKLSTYGIGKDLSKKTWGSLIRQLIALGLLRQSLG--T-PGLKLTEKARN----VL-RGELSVELAVP---R 508 (590)
T ss_pred h--hhcccccccccCCCcccCccchhhhHHHHHhcCceeecCC--c-ccccccHhhhH----hh-ccceeeeeccc---c
Confidence 1 24555556655533 22221 0 11111111111 00 00001111110 0
Q ss_pred CCCCCcccccccccChhHhhHHHHHHhccccccc
Q 003593 767 GKPKLHQQREDGYDRPRSIIKSYEKKRQEKTSLT 800 (808)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (808)
.+......++++|+++|++|++++++...||.+.
T Consensus 509 ~~~~~~~~~~~lf~~lr~~r~~~a~~~~vp~~vi 542 (590)
T COG0514 509 LRALSIGEDRDLFERLRALRKEIADEENVPPYVV 542 (590)
T ss_pred cccccccccHHHHHHHHHHHHHhhhhhcCCceEE
Confidence 1111112256799999999999999999998754
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=9.2e-53 Score=500.29 Aligned_cols=427 Identities=16% Similarity=0.133 Sum_probs=304.5
Q ss_pred hhcccCchH--HHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHH-HHHHHHhcCcEEEEcccHHHHH
Q 003593 258 FCIEEFPDE--IKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAM 332 (808)
Q Consensus 258 ~~~~~fp~~--l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~-~L~~L~~~~~~lvl~Ptr~La~ 332 (808)
|....||-. +..++ ....||..+.+.| .|+.++.|+|++++||||+|||+| +|++|...+.+|||+||++||.
T Consensus 437 W~~~~fpw~~~L~~~l--k~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmq 514 (1195)
T PLN03137 437 WSSRNFPWTKKLEVNN--KKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQ 514 (1195)
T ss_pred ccccCCCchHHHHHHH--HHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHH
Confidence 444566643 33222 2457998888864 788899999999999999999999 5777778889999999999999
Q ss_pred HHHHHHHHcccccccccccccccc------------ccCCeEEEeeecccCC-------------CceeEEEEccchhhh
Q 003593 333 EVFDKVNALGVYCSLLTGQEKKLV------------PFSNHIACTVEMVSTD-------------EMYDVAVIDEIQMMS 387 (808)
Q Consensus 333 Qi~~~l~~~g~~~~l~~g~~~~~~------------~~~~~i~~t~e~l~~~-------------~lv~~vVIDEAh~i~ 387 (808)
+|+..+...|+.+..++|...... ....++++||+.+... ..+.+||||||||++
T Consensus 515 DQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 515 DQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 999999999998877766532110 2346788899876421 127899999999999
Q ss_pred cccchhHHHHHHhhcc-------ccc-eeccC--CchHHHHHHHHhhhcCCCcEEEEeeecch------hhh-hHHHHHH
Q 003593 388 DACRGYAWTRALLGLM-------ADE-IHLCG--DPSVLDVVRKICSETGDELHEQHYERFKP------LVV-EAKTLLG 450 (808)
Q Consensus 388 d~~~g~~~~~~l~~l~-------~~~-i~l~~--s~~~~~~i~~l~~~~~~~~~~~~~~r~~~------~~~-~~~~ll~ 450 (808)
+ ||++|+..|..+. ... +.+++ ++.+...+...+......++...+.|.+. ... ....+..
T Consensus 595 q--WGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~ 672 (1195)
T PLN03137 595 Q--WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDK 672 (1195)
T ss_pred h--cccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHH
Confidence 8 8888887665432 212 22333 33334433333332222233333433221 000 1123444
Q ss_pred HHhhcC-CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-c
Q 003593 451 DLRNVR-SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-I 527 (808)
Q Consensus 451 ~l~~~~-~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V 527 (808)
.+.... .+..|||+ ++++++.++..|.+. |+.+..|||+|++++|..++++|.. |+++|||||++||||||+| |
T Consensus 673 ~I~~~~~~esgIIYC~SRke~E~LAe~L~~~-Gika~~YHAGLs~eeR~~vqe~F~~--Gei~VLVATdAFGMGIDkPDV 749 (1195)
T PLN03137 673 FIKENHFDECGIIYCLSRMDCEKVAERLQEF-GHKAAFYHGSMDPAQRAFVQKQWSK--DEINIICATVAFGMGINKPDV 749 (1195)
T ss_pred HHHhcccCCCceeEeCchhHHHHHHHHHHHC-CCCeeeeeCCCCHHHHHHHHHHHhc--CCCcEEEEechhhcCCCccCC
Confidence 444332 33345555 789999999999875 9999999999999999999999965 9999999999999999998 9
Q ss_pred cEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC-CHHHHHHHhcCCchhh--------------
Q 003593 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD-DLDYLIECLKQPFEVV-------------- 592 (808)
Q Consensus 528 ~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~-d~~~l~~~l~~~~~~~-------------- 592 (808)
++||||++ |.|++.|+||+|||||+|. .|.|++||+. |...+..++.+...+.
T Consensus 750 R~VIHydl---------PkSiEsYyQriGRAGRDG~---~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~ 817 (1195)
T PLN03137 750 RFVIHHSL---------PKSIEGYHQECGRAGRDGQ---RSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSG 817 (1195)
T ss_pred cEEEEcCC---------CCCHHHHHhhhcccCCCCC---CceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhH
Confidence 99999999 9999999999999999999 8999999975 4444555554321110
Q ss_pred -HHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCCcccCCcchHHHHHHHHHHhcCCChhhhhhhcCCCCCCC-
Q 003593 593 -KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIR- 670 (808)
Q Consensus 593 -~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~l~~~~~l~~~d~~~~c~~p~~~~- 670 (808)
.+......+..|..||+....|++..||.||||.+... .|+ ..||+|..|....
T Consensus 818 ~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~~~~~----~C~--------------------~~CDnC~~~~~~~~ 873 (1195)
T PLN03137 818 RILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDST----NCK--------------------KTCDNCSSSKSLID 873 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccccCcc----CCC--------------------CCCCCCCCCCcccc
Confidence 00011245778999999866899999999999975321 465 1499999988742
Q ss_pred -c-----hHHHHHHHHHHhHccCCceEEeecCCCC-------------CCCCChhhHHHHHHHhhHhhhhhhhhcc
Q 003593 671 -D-----PKAMYHLLRFASSYSKNAPVSIAMGMPK-------------GSAKNDAELLDLETKHQVLSMYLWLSHQ 727 (808)
Q Consensus 671 -~-----~~~~~~~~~~~~~~~~~~~v~il~~~~~-------------~~~~~~~~l~~le~~~~~l~~y~wl~~~ 727 (808)
| +++++|+.+..++||.++++++|+|..+ ++......-..++.....|-..+||...
T Consensus 874 ~D~T~~Aq~~ls~V~~~~~~fg~~~iidvlrGs~~~~i~~~~~d~l~~~G~gk~~s~~~~~~li~~Li~~g~L~~~ 949 (1195)
T PLN03137 874 KDVTEIARQLVELVKLTGERFSSAHILEVYRGSLNQYVKKHRHETLSLHGAGKHLSKGEASRILHYLVTEDILAED 949 (1195)
T ss_pred cccHHHHHHHHHHHHHhccCcchhheehhhhccccHHHHHhCcccccccCccccCCHHHHHHHHHHHHHcCCceee
Confidence 3 7899999999999999999999999842 2222222333456666667777777543
No 4
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.6e-51 Score=485.72 Aligned_cols=478 Identities=16% Similarity=0.168 Sum_probs=328.0
Q ss_pred HCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHH-HHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccccccccccc
Q 003593 276 SADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE 352 (808)
Q Consensus 276 ~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~-~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~ 352 (808)
..||..|+++| +++.++.|+|++++||||||||+| +++++...+.+|||+||++|+.|+++.++..|+.+..+++..
T Consensus 20 ~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~ 99 (607)
T PRK11057 20 TFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQ 99 (607)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 47999988875 778889999999999999999999 567777888999999999999999999999998887766654
Q ss_pred cccc----------ccCCeEEEeeecccCC--------CceeEEEEccchhhhcccchhHHHHHHhhc-------ccc-c
Q 003593 353 KKLV----------PFSNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGL-------MAD-E 406 (808)
Q Consensus 353 ~~~~----------~~~~~i~~t~e~l~~~--------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l-------~~~-~ 406 (808)
.... .....+++||+.+... ..+++|||||||++++ ||++|+..+..+ +.. .
T Consensus 100 ~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~--~G~~fr~~y~~L~~l~~~~p~~~~ 177 (607)
T PRK11057 100 TREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ--WGHDFRPEYAALGQLRQRFPTLPF 177 (607)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc--ccCcccHHHHHHHHHHHhCCCCcE
Confidence 3211 1234567787765432 1279999999999997 888877655433 121 2
Q ss_pred eeccCCch--HHHHHHHHhhhcCCCcEEEEeeecchh------hhhHHHHHHHHhhcCCCCEEEEe-chhHHHHHHHHHH
Q 003593 407 IHLCGDPS--VLDVVRKICSETGDELHEQHYERFKPL------VVEAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIE 477 (808)
Q Consensus 407 i~l~~s~~--~~~~i~~l~~~~~~~~~~~~~~r~~~~------~~~~~~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~ 477 (808)
+.++++++ ....+...............+.+.+.. ......++..+.....+..|||+ +++.++.++..|.
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~ 257 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQ 257 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 23333332 222222222111111222222222110 11123455566555555667766 6789999999998
Q ss_pred HhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhC
Q 003593 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556 (808)
Q Consensus 478 ~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~G 556 (808)
+. |+.+..|||+|++++|..+++.|+. |+++|||||++++||||+| |++|||+|+ |.|.++|+||+|
T Consensus 258 ~~-g~~v~~~Ha~l~~~~R~~i~~~F~~--g~~~VLVaT~a~~~GIDip~V~~VI~~d~---------P~s~~~y~Qr~G 325 (607)
T PRK11057 258 SR-GISAAAYHAGLDNDVRADVQEAFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI---------PRNIESYYQETG 325 (607)
T ss_pred hC-CCCEEEecCCCCHHHHHHHHHHHHC--CCCCEEEEechhhccCCCCCcCEEEEeCC---------CCCHHHHHHHhh
Confidence 75 9999999999999999999999965 9999999999999999998 999999999 999999999999
Q ss_pred ccCCCCCCCCceEEEEEecCC-HHHHHHHhcCCchhhHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCCccc
Q 003593 557 RAGRRGSIYPDGLTTTLNLDD-LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635 (808)
Q Consensus 557 RAGR~G~~~~~G~~i~l~~~d-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~ 635 (808)
||||+|. .|.|++|++.. ...+..++........+......+..|..||+. ..|++..||.||+|... ..
T Consensus 326 RaGR~G~---~~~~ill~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~Crr~~~l~yf~e~~~-----~~ 396 (607)
T PRK11057 326 RAGRDGL---PAEAMLFYDPADMAWLRRCLEEKPAGQQQDIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGRQ-----EP 396 (607)
T ss_pred hccCCCC---CceEEEEeCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHhCCCCC-----CC
Confidence 9999998 89999999754 445566665544332222223356789999987 67999999999998642 24
Q ss_pred CCcchHHHHHHHHHHhcCCChhhhhhhcCCCCCCCc-----hHHHHHHHHHHhHccCCceEEeecCCCCCC---------
Q 003593 636 CRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGS--------- 701 (808)
Q Consensus 636 c~~~~~~~~a~~l~~~~~l~~~d~~~~c~~p~~~~~-----~~~~~~~~~~~~~~~~~~~v~il~~~~~~~--------- 701 (808)
|+ .||+|..|....| +++++++.+..++||.++++++|+|..+..
T Consensus 397 c~---------------------~cd~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 455 (607)
T PRK11057 397 CG---------------------NCDICLDPPKQYDGLEDAQKALSCIYRVNQRFGMGYVVEVLRGANNQRIRDYGHDKL 455 (607)
T ss_pred CC---------------------CCCCCCCcccccccHHHHHHHHHHHHHhcCCCCcceeeeeeeccCcchhhhcccccC
Confidence 76 7999999876544 688999999999999999999999984311
Q ss_pred ----CCChhhHHHHHHHhhHhhhhhhhhcccCcccCCchHHHHHHHHHHHHHHHHhhhccCCchh-hhhhCCCCCccccc
Q 003593 702 ----AKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPE-SRQAGKPKLHQQRE 776 (808)
Q Consensus 702 ----~~~~~~l~~le~~~~~l~~y~wl~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 776 (808)
......-..++...+.|-.-+||....+ .||........+..+.....-.|........ ++...+......+.
T Consensus 456 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (607)
T PRK11057 456 KVYGIGRDKSHEHWVSVIRQLIHLGLVTQNIA--QHSALQLTEAARPVLRGEVSLQLAVPRIVALKPRAMQKSFGGNYDR 533 (607)
T ss_pred CccCcCCcCCHHHHHHHHHHHHHcCCceeccC--ccceEEECHHHHHHhcCCceEEEecccccccccccccccccccchH
Confidence 1111122234555555555566655544 4565544433333222211111110000000 00001111122345
Q ss_pred ccccChhHhhHHHHHHhcccccc
Q 003593 777 DGYDRPRSIIKSYEKKRQEKTSL 799 (808)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~ 799 (808)
++|+++|++|++++++.+.+|-.
T Consensus 534 ~l~~~Lr~~R~~~a~~~~~~~~~ 556 (607)
T PRK11057 534 KLFAKLRKLRKSIADEENIPPYV 556 (607)
T ss_pred HHHHHHHHHHHHHHHHcCCCCeE
Confidence 69999999999999999888754
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=8.9e-52 Score=446.75 Aligned_cols=354 Identities=17% Similarity=0.222 Sum_probs=284.0
Q ss_pred CCCCCCchhhhhhhhhhh-cccCCChhhHHHHHHHHHhhhhchhHHhHHHHhhcCCCCCCChhhhHHHHhhhcCChhHHH
Q 003593 158 HLSTRDPVEVFGELRSTE-KGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQ 236 (808)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~i~~~~~p~~~~~f~~~~~~~~~~~i~~ 236 (808)
.+.++..+..|+..||++ .+.+|+.+||+ ++ ..+ +.+.++|+.+|+|+++|.+. +++.++.
T Consensus 196 k~~k~~~k~~~DdrhW~~k~l~Em~~rdwr----i~---red-------ynis~kg~~lpnplrnwEE~---~~P~e~l- 257 (673)
T KOG0333|consen 196 KVCKKEAKSGWDDRHWSEKVLAEMTERDWR----IF---RED-------YNISIKGGRLPNPLRNWEES---GFPLELL- 257 (673)
T ss_pred HhhhhhhhccccccchhhhhHHhcCCccce----ee---ecc-------eeeeecCCCCCccccChhhc---CCCHHHH-
Confidence 344455677799999999 89999999999 22 333 67889999999999999998 6665433
Q ss_pred HHHHcCCCchhhhhhhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHH
Q 003593 237 YLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQR 314 (808)
Q Consensus 237 ~l~~~~~~~~~~~~~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~ 314 (808)
+++...||..|+|+| +|+..++.+|+|++|.||||||++++.+
T Consensus 258 -----------------------------------~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ip 302 (673)
T KOG0333|consen 258 -----------------------------------SVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIP 302 (673)
T ss_pred -----------------------------------HHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhh
Confidence 456689999999984 7888899999999999999999997766
Q ss_pred HH----------------hcCcEEEEcccHHHHHHHHHHHHHcccccc-----ccccccccccccCCeEEEeeecccCCC
Q 003593 315 FM----------------EAKKGIYCSPLRLLAMEVFDKVNALGVYCS-----LLTGQEKKLVPFSNHIACTVEMVSTDE 373 (808)
Q Consensus 315 L~----------------~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~-----l~~g~~~~~~~~~~~i~~t~e~l~~~~ 373 (808)
|+ .++.++|++|||+||+||.++-.+++...+ +++|.....+.+.....|.+.+++|++
T Consensus 303 Ll~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgr 382 (673)
T KOG0333|consen 303 LLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGR 382 (673)
T ss_pred HHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchH
Confidence 64 356899999999999999999999876544 455555444433444456666677766
Q ss_pred c-------------eeEEEEccchhhhcccchhHHHHHHhhcccc-------------------------ceeccCCchH
Q 003593 374 M-------------YDVAVIDEIQMMSDACRGYAWTRALLGLMAD-------------------------EIHLCGDPSV 415 (808)
Q Consensus 374 l-------------v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~-------------------------~i~l~~s~~~ 415 (808)
+ +.+||+|||++|.||||.+++..+|..+|.. ++++|++++.
T Consensus 383 Lid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm 462 (673)
T KOG0333|consen 383 LIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATM 462 (673)
T ss_pred HHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCC
Confidence 5 7899999999999999999999999887642 4667788777
Q ss_pred HHHHHHHhhhcCCCcEE--------------EEeeecchhhhhHHHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHHhc
Q 003593 416 LDVVRKICSETGDELHE--------------QHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHT 480 (808)
Q Consensus 416 ~~~i~~l~~~~~~~~~~--------------~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~ 480 (808)
...+..|+.......+. |...... ...+.+.|+.++.+.....+|||.+ ++.|+.++..|.+.
T Consensus 463 ~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~-ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~- 540 (673)
T KOG0333|consen 463 PPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVS-EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA- 540 (673)
T ss_pred ChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEec-chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc-
Confidence 77777777654433222 1111111 1222467888887776677777775 67888899999875
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccC
Q 003593 481 NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559 (808)
Q Consensus 481 g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAG 559 (808)
|++|+.|||+.++++|+.+++.|++ |..+||||||++||||||| |.+|||||+ +.++++|.|||||||
T Consensus 541 g~~~~tlHg~k~qeQRe~aL~~fr~--~t~dIlVaTDvAgRGIDIpnVSlVinydm---------aksieDYtHRIGRTg 609 (673)
T KOG0333|consen 541 GYKVTTLHGGKSQEQRENALADFRE--GTGDILVATDVAGRGIDIPNVSLVINYDM---------AKSIEDYTHRIGRTG 609 (673)
T ss_pred cceEEEeeCCccHHHHHHHHHHHHh--cCCCEEEEecccccCCCCCccceeeecch---------hhhHHHHHHHhcccc
Confidence 9999999999999999999999976 9999999999999999998 999999999 779999999999999
Q ss_pred CCCCCCCceEEEEEecCCHHH
Q 003593 560 RRGSIYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 560 R~G~~~~~G~~i~l~~~d~~~ 580 (808)
|+|+ .|++++|+++++..
T Consensus 610 RAGk---~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 610 RAGK---SGTAISFLTPADTA 627 (673)
T ss_pred cccc---CceeEEEeccchhH
Confidence 9999 89999999877633
No 6
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.4e-49 Score=467.64 Aligned_cols=479 Identities=17% Similarity=0.160 Sum_probs=328.9
Q ss_pred HCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHH-HHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccccccccccc
Q 003593 276 SADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE 352 (808)
Q Consensus 276 ~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~-~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~ 352 (808)
..||..+.++| .+..++.|+|++++||||+|||+| +++++...+.+|||+|+++|+.|+++.++.+|+.+..+++..
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~ 87 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTL 87 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 58999888864 788899999999999999999999 567777888999999999999999999999999887776654
Q ss_pred cccc----------ccCCeEEEeeecccCCC--------ceeEEEEccchhhhcccchhHHHHHHhhcc-------cc-c
Q 003593 353 KKLV----------PFSNHIACTVEMVSTDE--------MYDVAVIDEIQMMSDACRGYAWTRALLGLM-------AD-E 406 (808)
Q Consensus 353 ~~~~----------~~~~~i~~t~e~l~~~~--------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~-------~~-~ 406 (808)
.... .....+++|++.+.... .+++||||||||+++ ||++|++.+..+. .. .
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~--~g~~frp~y~~l~~l~~~~~~~~v 165 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQ--WGHDFRPEYQRLGSLAERFPQVPR 165 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccc--ccCccHHHHHHHHHHHHhCCCCCE
Confidence 3211 12346678887765422 289999999999997 8988887664432 22 2
Q ss_pred eeccCCc--hHHHHHHHHhhhcCCCcEEEEeeecch------hhhhHHHHHHHHhhcCCCCEEEEe-chhHHHHHHHHHH
Q 003593 407 IHLCGDP--SVLDVVRKICSETGDELHEQHYERFKP------LVVEAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIE 477 (808)
Q Consensus 407 i~l~~s~--~~~~~i~~l~~~~~~~~~~~~~~r~~~------~~~~~~~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~ 477 (808)
+.+++++ .+...+...+.......+...+.+.+. .......+...+.....+..|||+ +++.++.++..|.
T Consensus 166 i~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~ 245 (591)
T TIGR01389 166 IALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLE 245 (591)
T ss_pred EEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 2333333 233333333222222223333333221 111223566666655555566666 6899999999998
Q ss_pred HhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhC
Q 003593 478 KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAG 556 (808)
Q Consensus 478 ~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~G 556 (808)
.. |+.+..|||+|++++|..+++.|.. |+++|||||++++||||+| |++|||+++ |.|+++|+||+|
T Consensus 246 ~~-g~~~~~~H~~l~~~~R~~i~~~F~~--g~~~vlVaT~a~~~GID~p~v~~VI~~~~---------p~s~~~y~Q~~G 313 (591)
T TIGR01389 246 SQ-GISALAYHAGLSNKVRAENQEDFLY--DDVKVMVATNAFGMGIDKPNVRFVIHYDM---------PGNLESYYQEAG 313 (591)
T ss_pred hC-CCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCcCCCCCEEEEcCC---------CCCHHHHhhhhc
Confidence 75 9999999999999999999999965 9999999999999999998 999999999 999999999999
Q ss_pred ccCCCCCCCCceEEEEEecCCH-HHHHHHhcCCchhh-HHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCCcc
Q 003593 557 RAGRRGSIYPDGLTTTLNLDDL-DYLIECLKQPFEVV-KKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYF 634 (808)
Q Consensus 557 RAGR~G~~~~~G~~i~l~~~d~-~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~ 634 (808)
||||+|. .|.|++|++..+ ..+..++....+.. .+......+..|..||.. ..|++..++.||++... .
T Consensus 314 RaGR~G~---~~~~il~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~c~r~~~~~~f~~~~~-----~ 384 (591)
T TIGR01389 314 RAGRDGL---PAEAILLYSPADIALLKRRIEQSEADDDYKQIEREKLRAMIAYCET-QTCRRAYILRYFGENEV-----E 384 (591)
T ss_pred cccCCCC---CceEEEecCHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHcc-cccHhHHHHHhcCCCCC-----C
Confidence 9999998 899999987554 44555665533222 111113456778899987 78999999999998531 2
Q ss_pred cCCcchHHHHHHHHHHhcCCChhhhhhhcCCCCCCCc-----hHHHHHHHHHHhHccCCceEEeecCCCC----------
Q 003593 635 LCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPK---------- 699 (808)
Q Consensus 635 ~c~~~~~~~~a~~l~~~~~l~~~d~~~~c~~p~~~~~-----~~~~~~~~~~~~~~~~~~~v~il~~~~~---------- 699 (808)
.|+ .||+|..|....| +++++++.++.++||.+.++++++|...
T Consensus 385 ~c~---------------------~cd~c~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 443 (591)
T TIGR01389 385 PCG---------------------NCDNCLDPPKSYDATVEAQKALSCVYRMGQRFGVGYIIEVLRGSKNDKILQKGHDQ 443 (591)
T ss_pred CCC---------------------CCCCCCCCCceeehHHHHHHHHHHHHHhcCCCchhHhHHHHhCccchhHHhcCccc
Confidence 576 7999998887655 6788999999999999999999988632
Q ss_pred ---CCCCChhhHHHHHHHhhHhhhhhhhhcccCcccCCchHHHHHHHHHHHHHHHHhhhccCCchhhhhh-CCCCCcccc
Q 003593 700 ---GSAKNDAELLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQA-GKPKLHQQR 775 (808)
Q Consensus 700 ---~~~~~~~~l~~le~~~~~l~~y~wl~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 775 (808)
++....-....++...+.|-.-+||....+ .||........+..+.......+...........+ ........+
T Consensus 444 ~~~~g~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (591)
T TIGR01389 444 LSTYGIGKDYTQKEWRSLIDQLIAEGLLTENDE--IYIGLQLTEAARKVLKNEVEVLLRPFKVVAKEKTRVQKNLSVGVD 521 (591)
T ss_pred CCccCcCCCCCHHHHHHHHHHHHHcCCceeccC--cCceEEeccchhhhccCcceeeecccccccchhhhhccccccccH
Confidence 111111223344555666666666654433 45554443333322222111111111100000000 000111123
Q ss_pred cccccChhHhhHHHHHHhccccccc
Q 003593 776 EDGYDRPRSIIKSYEKKRQEKTSLT 800 (808)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (808)
...|+++++.|+++|+++..|+-..
T Consensus 522 ~~l~~~L~~wR~~~A~~~~~p~~~I 546 (591)
T TIGR01389 522 NALFEALRELRKEQADEQNVPPYVI 546 (591)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 3699999999999999998887553
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.7e-49 Score=450.22 Aligned_cols=403 Identities=20% Similarity=0.213 Sum_probs=287.3
Q ss_pred HHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHH-HHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccc
Q 003593 275 ESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNA-LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQ 351 (808)
Q Consensus 275 ~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~-L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~ 351 (808)
+..||..|+|+| +++.++.|+|++++||||||||+|| ++++..++.+|||+|||+|+.|+++.+...|+.+..++|.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~ 84 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFLNSS 84 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 367999999875 8888999999999999999999995 6667778899999999999999999999999998888776
Q ss_pred cccc----------cccCCeEEEeeecccCC----------CceeEEEEccchhhhcccchhHHHHHHhhc-------cc
Q 003593 352 EKKL----------VPFSNHIACTVEMVSTD----------EMYDVAVIDEIQMMSDACRGYAWTRALLGL-------MA 404 (808)
Q Consensus 352 ~~~~----------~~~~~~i~~t~e~l~~~----------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l-------~~ 404 (808)
.... .....++++||+.+... ..+++|||||||++++ ||++|+..+..+ +.
T Consensus 85 ~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~ 162 (470)
T TIGR00614 85 QSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ--WGHDFRPDYKALGSLKQKFPN 162 (470)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc--cccccHHHHHHHHHHHHHcCC
Confidence 5432 11245678888765332 2389999999999997 888887665433 22
Q ss_pred c-ceeccCCch--HHHHHHHHhhhcCCCcEEEEeeecch------hh-hhHHHHHHHHhhcCCCCE-EEEe-chhHHHHH
Q 003593 405 D-EIHLCGDPS--VLDVVRKICSETGDELHEQHYERFKP------LV-VEAKTLLGDLRNVRSGDC-VVAF-SRREIFEV 472 (808)
Q Consensus 405 ~-~i~l~~s~~--~~~~i~~l~~~~~~~~~~~~~~r~~~------~~-~~~~~ll~~l~~~~~g~~-II~f-srk~~~~l 472 (808)
. .+.++++++ +...+...............+.+.+. .. .....++..+....+++. |||+ +++.++.+
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~l 242 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQV 242 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHH
Confidence 2 222333332 22222222211122222222222110 00 112245555554444544 5555 68999999
Q ss_pred HHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHH
Q 003593 473 KMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQV 551 (808)
Q Consensus 473 ~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y 551 (808)
+..|.+. |+.+..|||+|++++|..+++.|+. |+++|||||++++||||+| |++|||+++ |.|+++|
T Consensus 243 a~~L~~~-g~~~~~~H~~l~~~eR~~i~~~F~~--g~~~vLVaT~~~~~GID~p~V~~VI~~~~---------P~s~~~y 310 (470)
T TIGR00614 243 TASLQNL-GIAAGAYHAGLEISARDDVHHKFQR--DEIQVVVATVAFGMGINKPDVRFVIHYSL---------PKSMESY 310 (470)
T ss_pred HHHHHhc-CCCeeEeeCCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCCcccceEEEEeCC---------CCCHHHH
Confidence 9999875 9999999999999999999999965 9999999999999999998 999999999 9999999
Q ss_pred HHHhCccCCCCCCCCceEEEEEecCC-HHHHHHHhcCCchhhHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccC
Q 003593 552 KQIAGRAGRRGSIYPDGLTTTLNLDD-LDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630 (808)
Q Consensus 552 ~Qr~GRAGR~G~~~~~G~~i~l~~~d-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~ 630 (808)
+||+|||||+|. .|.|++|++.. ...+..++........+......++.|..++.. ..|++..++.||++.....
T Consensus 311 ~Qr~GRaGR~G~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~crr~~l~~~f~~~~~~~ 386 (470)
T TIGR00614 311 YQESGRAGRDGL---PSECHLFYAPADINRLRRLLMEEPDGQQRTYKLKLYEMMEYCLNS-STCRRLILLSHFGEKQLNK 386 (470)
T ss_pred HhhhcCcCCCCC---CceEEEEechhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcc-ccCHHHHHHHHcCCccccc
Confidence 999999999999 89999999754 445555554433222221112234555555544 7899999999999853210
Q ss_pred -----CCcccCCcchHHHHHHHHHHhcCCChhhhhhhcCC------CCCCCc-----hHHHHHHHHHHhHccCCceEEee
Q 003593 631 -----GSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFA------PVNIRD-----PKAMYHLLRFASSYSKNAPVSIA 694 (808)
Q Consensus 631 -----~~~~~c~~~~~~~~a~~l~~~~~l~~~d~~~~c~~------p~~~~~-----~~~~~~~~~~~~~~~~~~~v~il 694 (808)
.....|+ +|++|.. +....+ +++++++.+..+++|.++.++++
T Consensus 387 ~~~~~~~~~~C~---------------------~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (470)
T TIGR00614 387 SFGIMGTEKCCD---------------------NCCKRLDYKTKDVTDKVYDFGPQAQKALSAVGRLNQKFGMGYPIDFL 445 (470)
T ss_pred ccccccCCCCCC---------------------CCCCccccccCCCChhHhhHHHHHHHHHHHHHHhcCCCchhhhHHHH
Confidence 1112343 5555554 333333 67888999999999999999999
Q ss_pred cCCCCCCCCChhhHHHHHHHhhHhhhhhhh
Q 003593 695 MGMPKGSAKNDAELLDLETKHQVLSMYLWL 724 (808)
Q Consensus 695 ~~~~~~~~~~~~~l~~le~~~~~l~~y~wl 724 (808)
+|.. .+.+. +.+|+.+++||-.
T Consensus 446 ~g~~------~~~~~--~~~~~~~~~~g~~ 467 (470)
T TIGR00614 446 RGSN------SQKLR--DRGFRKHSLYGRG 467 (470)
T ss_pred hCCc------chhHH--hcCCCcCCccCCC
Confidence 9973 24444 7799999999854
No 8
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-49 Score=437.48 Aligned_cols=354 Identities=19% Similarity=0.199 Sum_probs=263.7
Q ss_pred HHhhcCCCC-CCChhhhHHHHhhhcCChhHHHHHHHcCCCchhhhhhhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcc
Q 003593 206 LAVYIGKSF-FPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHT 284 (808)
Q Consensus 206 ~~~~i~~~~-~p~~~~~f~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~ 284 (808)
.+..+.+.. +|.|...|.+. ..+.+....+....... ....-..-|.++.++. .+..+++..||..|||
T Consensus 47 ~e~~v~~~~~~p~p~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~ls~------~~~~~lk~~g~~~Ptp 116 (519)
T KOG0331|consen 47 NEITVKGGDSVPKPVKSFEES---GFPAKVLEEIPKLSRSS-GESDSSAAFQELGLSE------ELMKALKEQGFEKPTP 116 (519)
T ss_pred ceeeccCCCCCCCCccchhcc---cCCcccccccccccccc-ccCCcchhhhcccccH------HHHHHHHhcCCCCCch
Confidence 455666655 99999999987 55554444433211111 0001111555555544 4567889999999999
Q ss_pred hh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----h---------cCcEEEEcccHHHHHHHHHHHHHcccccc---
Q 003593 285 WF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----E---------AKKGIYCSPLRLLAMEVFDKVNALGVYCS--- 346 (808)
Q Consensus 285 ~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~---------~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~--- 346 (808)
|| .++.+|.|+|++++|.||||||++|+.+.+ . ++.+||++||||||.|+.+.+.+++..+.
T Consensus 117 IQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~ 196 (519)
T KOG0331|consen 117 IQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRS 196 (519)
T ss_pred hhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccE
Confidence 85 677789999999999999999999655543 2 45789999999999999999999866544
Q ss_pred --ccccccccccc-----cCCeEEEeee----cccCCC----ceeEEEEccchhhhcccchhHHHHHHhhc-cccceecc
Q 003593 347 --LLTGQEKKLVP-----FSNHIACTVE----MVSTDE----MYDVAVIDEIQMMSDACRGYAWTRALLGL-MADEIHLC 410 (808)
Q Consensus 347 --l~~g~~~~~~~-----~~~~i~~t~e----~l~~~~----lv~~vVIDEAh~i~d~~~g~~~~~~l~~l-~~~~i~l~ 410 (808)
+++|...+.+. ...++++||. ++..+. .+.++|+||||+|+||||+++++.++..+ ++.+++++
T Consensus 197 ~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm 276 (519)
T KOG0331|consen 197 TCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLM 276 (519)
T ss_pred EEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEE
Confidence 34444333322 1334555652 222222 18999999999999999999999999999 55668999
Q ss_pred CCchHHHHHHHHhhhcCCCcEEEEeeecch---------------hhhhHH---HHHHHHhhcCCCCEEEEe-chhHHHH
Q 003593 411 GDPSVLDVVRKICSETGDELHEQHYERFKP---------------LVVEAK---TLLGDLRNVRSGDCVVAF-SRREIFE 471 (808)
Q Consensus 411 ~s~~~~~~i~~l~~~~~~~~~~~~~~r~~~---------------~~~~~~---~ll~~l~~~~~g~~II~f-srk~~~~ 471 (808)
+++++...++.++.......+......... ...... .++..+.....+++|||+ +++.|++
T Consensus 277 ~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~ 356 (519)
T KOG0331|consen 277 FSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDE 356 (519)
T ss_pred EeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHH
Confidence 999999999888877655444333221110 000111 233333334567788888 6789999
Q ss_pred HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhH
Q 003593 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQ 550 (808)
Q Consensus 472 l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~ 550 (808)
+...+... ++++..+||+++|.+|..+++.|++ |+..||||||+++|||||| |++|||||+ |.++++
T Consensus 357 l~~~l~~~-~~~a~~iHGd~sQ~eR~~~L~~Fre--G~~~vLVATdVAaRGLDi~dV~lVInydf---------P~~vEd 424 (519)
T KOG0331|consen 357 LARNLRRK-GWPAVAIHGDKSQSERDWVLKGFRE--GKSPVLVATDVAARGLDVPDVDLVINYDF---------PNNVED 424 (519)
T ss_pred HHHHHHhc-CcceeeecccccHHHHHHHHHhccc--CCcceEEEcccccccCCCccccEEEeCCC---------CCCHHH
Confidence 99999875 8999999999999999999999965 9999999999999999997 999999999 999999
Q ss_pred HHHHhCccCCCCCCCCceEEEEEecCCHHHHHHH
Q 003593 551 VKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (808)
Q Consensus 551 y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~ 584 (808)
|+||+|||||+|. .|.+++|++.+...+...
T Consensus 425 YVHRiGRTGRa~~---~G~A~tfft~~~~~~a~~ 455 (519)
T KOG0331|consen 425 YVHRIGRTGRAGK---KGTAITFFTSDNAKLARE 455 (519)
T ss_pred HHhhcCccccCCC---CceEEEEEeHHHHHHHHH
Confidence 9999999999999 899999998776555443
No 9
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-45 Score=396.23 Aligned_cols=404 Identities=17% Similarity=0.177 Sum_probs=295.7
Q ss_pred HHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh----------cC--cEEEEcccHHHHHH
Q 003593 268 KRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME----------AK--KGIYCSPLRLLAME 333 (808)
Q Consensus 268 ~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~----------~~--~~lvl~Ptr~La~Q 333 (808)
..+++++...||...||+| +||..+.++||++-++||||||++|+.|+++ .+ .+|||+||||||.|
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 3567889999999999986 7888999999999999999999998888764 12 57999999999999
Q ss_pred HHHHHHHccc-----cccccccccccc-------cccCCeEEEeee----cccC------CCceeEEEEccchhhhcccc
Q 003593 334 VFDKVNALGV-----YCSLLTGQEKKL-------VPFSNHIACTVE----MVST------DEMYDVAVIDEIQMMSDACR 391 (808)
Q Consensus 334 i~~~l~~~g~-----~~~l~~g~~~~~-------~~~~~~i~~t~e----~l~~------~~lv~~vVIDEAh~i~d~~~ 391 (808)
|.+.+..+.. .|.+++|+.... ....+++++||. |+.. .+.++++|+||||+++||||
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgF 174 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGF 174 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccH
Confidence 9999987743 466666653221 124567888873 3322 12388999999999999999
Q ss_pred hhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEEEEe---------------eecchhhhhHHHHHHHHhhcC
Q 003593 392 GYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHY---------------ERFKPLVVEAKTLLGDLRNVR 456 (808)
Q Consensus 392 g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~~~---------------~r~~~~~~~~~~ll~~l~~~~ 456 (808)
...+..++..||..+.+-++++|..+.+..+......+.+.... ....+-......++..|.+..
T Consensus 175 e~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~ 254 (567)
T KOG0345|consen 175 EASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNK 254 (567)
T ss_pred HHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccc
Confidence 99999999999999999999999888888877665444332111 111111222346788888888
Q ss_pred CCCEEEEechhHHHHHHHHHHH-h-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEe
Q 003593 457 SGDCVVAFSRREIFEVKMAIEK-H-TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFY 533 (808)
Q Consensus 457 ~g~~II~fsrk~~~~l~~~L~~-~-~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~ 533 (808)
..++||||+...+.+....+.. . .+..+..+||.|++..|.++++.|++ ..-.+|+|||+++|||||| |++||++
T Consensus 255 ~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~--~~~~vl~~TDVaARGlDip~iD~VvQ~ 332 (567)
T KOG0345|consen 255 DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK--LSNGVLFCTDVAARGLDIPGIDLVVQF 332 (567)
T ss_pred cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh--ccCceEEeehhhhccCCCCCceEEEec
Confidence 8999999987666655544433 2 46789999999999999999999975 7888999999999999998 9999999
Q ss_pred CCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHhcCC-chhhHHhCCCCcHHHHHHHHhhcc
Q 003593 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQP-FEVVKKVGLFPFFEQVELFAGQLS 612 (808)
Q Consensus 534 ~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 612 (808)
|+ |.++..|+||+|||||.|+ .|.++.|..+.+..+.++|.-. .+++.+.. ....
T Consensus 333 Dp---------P~~~~~FvHR~GRTaR~gr---~G~Aivfl~p~E~aYveFl~i~~~v~le~~~------------~e~~ 388 (567)
T KOG0345|consen 333 DP---------PKDPSSFVHRCGRTARAGR---EGNAIVFLNPREEAYVEFLRIKGKVELERID------------TEKA 388 (567)
T ss_pred CC---------CCChhHHHhhcchhhhccC---ccceEEEecccHHHHHHHHHhcCccchhhhc------------cccc
Confidence 99 9999999999999999999 8999999988888888887543 12222111 1101
Q ss_pred cccHHHHHHHHHhhcccCCCcccCCcchHHHHHHHHHHhcCCChhhhhhhcCCCCCCCchHHHHHHHHHHhHccCCceEE
Q 003593 613 NYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVS 692 (808)
Q Consensus 613 ~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~l~~~~~l~~~d~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~v~ 692 (808)
..+ +++.+..+-..||-. -.+.+.+|+++.+.|..|+...
T Consensus 389 ~~~-------------------------------~~~~ir~~~~~DR~~---------~dkG~kAFVS~VraY~~H~cs~ 428 (567)
T KOG0345|consen 389 SLS-------------------------------VYQDIRSIISKDRAV---------LDKGLKAFVSHVRAYKKHHCSY 428 (567)
T ss_pred chh-------------------------------HHHHHHHHhcccHHH---------HhhhHHHHHHHHHHHhhcceeE
Confidence 000 112222222233322 3588999999999999999888
Q ss_pred ee----------------cCCCCCCCCChhhHHHHHHHhhHhhhhhhh---hcccCcccCCchHHHHHHHHHHHH
Q 003593 693 IA----------------MGMPKGSAKNDAELLDLETKHQVLSMYLWL---SHQFKEEVFPYAKKAEAMATDIAE 748 (808)
Q Consensus 693 il----------------~~~~~~~~~~~~~l~~le~~~~~l~~y~wl---~~~~~~~~f~~~~~~~~~~~~~~~ 748 (808)
|+ ..+|.|+ +|++ ..+.-| |+ ...|....|+|..+.+.++..+..
T Consensus 429 Ifr~kdLd~~~lA~~YgLl~lP~M~-----Elk~-----~~~~~~-~~~~~~id~~~ikykdkkrEk~Rq~~l~~ 492 (567)
T KOG0345|consen 429 IFRLKDLDLGKLATLYGLLRLPKMP-----ELKQ-----YKIGEF-FFPKPAIDFSEIKYKDKKREKQRQQKLKV 492 (567)
T ss_pred EEeecCCcHHHHHHHHHHHhCCCcH-----HHhh-----hhccce-eccCCCcchhhhcccchHHHHHHHHHHHH
Confidence 74 2335554 2321 112222 44 244555578888777777665544
No 10
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-45 Score=386.04 Aligned_cols=297 Identities=19% Similarity=0.201 Sum_probs=231.1
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----hc---CcEEEEcccHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----EA---KKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~~---~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
.++++++.+|+..||++| +||.++.|+|||+.|.||||||.+|+.|++ .. ..++|++||||||.||.+.+.
T Consensus 71 ~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe 150 (476)
T KOG0330|consen 71 ELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFE 150 (476)
T ss_pred HHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHH
Confidence 667889999999999985 888899999999999999999999766655 33 478999999999999999999
Q ss_pred Hccccccc----cccc-cccc----cccC-CeEEEeeecc----c-CCC----ceeEEEEccchhhhcccchhHHHHHHh
Q 003593 340 ALGVYCSL----LTGQ-EKKL----VPFS-NHIACTVEMV----S-TDE----MYDVAVIDEIQMMSDACRGYAWTRALL 400 (808)
Q Consensus 340 ~~g~~~~l----~~g~-~~~~----~~~~-~~i~~t~e~l----~-~~~----lv~~vVIDEAh~i~d~~~g~~~~~~l~ 400 (808)
.+|...++ +.|. .... .... .++++||.-+ . ... .+.++|+||||+++|+.|+..+..++.
T Consensus 151 ~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk 230 (476)
T KOG0330|consen 151 ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILK 230 (476)
T ss_pred HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHH
Confidence 98655443 3333 2221 1123 3456666322 2 111 188999999999999999999999999
Q ss_pred hccccceeccCCchHHHHHHHHhhhcCCCcEE--------------EEeeecchhhhhHHHHHHHHhhcCCCCEEEEech
Q 003593 401 GLMADEIHLCGDPSVLDVVRKICSETGDELHE--------------QHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSR 466 (808)
Q Consensus 401 ~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~--------------~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~fsr 466 (808)
.+|..++++++++++.+.+.++.....+.... +.|- +.|...+...|+..++....+..|||++.
T Consensus 231 ~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~yl-fv~~k~K~~yLV~ll~e~~g~s~iVF~~t 309 (476)
T KOG0330|consen 231 VIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYL-FVPGKDKDTYLVYLLNELAGNSVIVFCNT 309 (476)
T ss_pred hcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheE-eccccccchhHHHHHHhhcCCcEEEEEec
Confidence 99999999999999998888887654443322 1111 11111222356666666555556666654
Q ss_pred h-HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccc
Q 003593 467 R-EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKII 544 (808)
Q Consensus 467 k-~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~ 544 (808)
. .+..++-.|. ..|+.+..+||.|+++.|.-.++.|+ +|.+.||||||+++||+|+| |+.|||||+
T Consensus 310 ~~tt~~la~~L~-~lg~~a~~LhGqmsq~~Rlg~l~~Fk--~~~r~iLv~TDVaSRGLDip~Vd~VVNyDi--------- 377 (476)
T KOG0330|consen 310 CNTTRFLALLLR-NLGFQAIPLHGQMSQSKRLGALNKFK--AGARSILVCTDVASRGLDIPHVDVVVNYDI--------- 377 (476)
T ss_pred cchHHHHHHHHH-hcCcceecccchhhHHHHHHHHHHHh--ccCCcEEEecchhcccCCCCCceEEEecCC---------
Confidence 4 4455555554 56999999999999999999999995 59999999999999999999 999999999
Q ss_pred cCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHH
Q 003593 545 PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (808)
Q Consensus 545 P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l 581 (808)
|.+..+|+||+||+||+|. .|.+|+|++.-+-.+
T Consensus 378 P~~skDYIHRvGRtaRaGr---sG~~ItlVtqyDve~ 411 (476)
T KOG0330|consen 378 PTHSKDYIHRVGRTARAGR---SGKAITLVTQYDVEL 411 (476)
T ss_pred CCcHHHHHHHcccccccCC---CcceEEEEehhhhHH
Confidence 9999999999999999999 999999998644333
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.5e-43 Score=412.67 Aligned_cols=298 Identities=17% Similarity=0.171 Sum_probs=225.3
Q ss_pred HHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh------------cCcEEEEcccHHHHHHHH
Q 003593 270 FRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME------------AKKGIYCSPLRLLAMEVF 335 (808)
Q Consensus 270 i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~------------~~~~lvl~Ptr~La~Qi~ 335 (808)
++++|..+||..||++| +++.+++|+|+|++||||||||++|+.+++. ++.+|||+|||+||.|+.
T Consensus 141 l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~ 220 (545)
T PTZ00110 141 ILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIR 220 (545)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHH
Confidence 34667899999999985 7888999999999999999999997555431 346899999999999999
Q ss_pred HHHHHcccccc----ccc-ccccccc-----ccCCeEEEeeecc----cCC----CceeEEEEccchhhhcccchhHHHH
Q 003593 336 DKVNALGVYCS----LLT-GQEKKLV-----PFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTR 397 (808)
Q Consensus 336 ~~l~~~g~~~~----l~~-g~~~~~~-----~~~~~i~~t~e~l----~~~----~lv~~vVIDEAh~i~d~~~g~~~~~ 397 (808)
+.+.+++.... ++. |...... ....++++||..+ ... ..+++|||||||+|++++|...++.
T Consensus 221 ~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~ 300 (545)
T PTZ00110 221 EQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRK 300 (545)
T ss_pred HHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHH
Confidence 99999865432 222 3222111 1235677887433 221 2289999999999999999999999
Q ss_pred HHhhccccceeccCCchHHHHHHHHhhhcCC-C---------------cEEEEeeecchhhhhHHHHHHHHhhc--CCCC
Q 003593 398 ALLGLMADEIHLCGDPSVLDVVRKICSETGD-E---------------LHEQHYERFKPLVVEAKTLLGDLRNV--RSGD 459 (808)
Q Consensus 398 ~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~-~---------------~~~~~~~r~~~~~~~~~~ll~~l~~~--~~g~ 459 (808)
++..+.+.++.+++++++...+..++..... . .+.+.+..... ......+...+... ..++
T Consensus 301 il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~~L~~ll~~~~~~~~k 379 (545)
T PTZ00110 301 IVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRGKLKMLLQRIMRDGDK 379 (545)
T ss_pred HHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHHHHHHHHHHhcccCCe
Confidence 9999988888888888776555544433221 1 11111111111 11122344444433 3445
Q ss_pred EEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc
Q 003593 460 CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK 537 (808)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K 537 (808)
+|||+ +++.|+.++..|... |+.+..+||++++++|..+++.|++ |+.+||||||+++||||+| |++|||||+
T Consensus 380 ~LIF~~t~~~a~~l~~~L~~~-g~~~~~ihg~~~~~eR~~il~~F~~--G~~~ILVaTdv~~rGIDi~~v~~VI~~d~-- 454 (545)
T PTZ00110 380 ILIFVETKKGADFLTKELRLD-GWPALCIHGDKKQEERTWVLNEFKT--GKSPIMIATDVASRGLDVKDVKYVINFDF-- 454 (545)
T ss_pred EEEEecChHHHHHHHHHHHHc-CCcEEEEECCCcHHHHHHHHHHHhc--CCCcEEEEcchhhcCCCcccCCEEEEeCC--
Confidence 66666 568899999999764 8999999999999999999999965 9999999999999999998 999999999
Q ss_pred CCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
|.++++|+||+|||||+|. .|.|++|+++++..+.+
T Consensus 455 -------P~s~~~yvqRiGRtGR~G~---~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 455 -------PNQIEDYVHRIGRTGRAGA---KGASYTFLTPDKYRLAR 490 (545)
T ss_pred -------CCCHHHHHHHhcccccCCC---CceEEEEECcchHHHHH
Confidence 9999999999999999999 89999999887655443
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-44 Score=413.41 Aligned_cols=304 Identities=20% Similarity=0.324 Sum_probs=236.6
Q ss_pred hhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHhc-----C---c-E
Q 003593 253 PIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFMEA-----K---K-G 321 (808)
Q Consensus 253 p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~~-----~---~-~ 321 (808)
+.|.++.+.. .+++++.++||..||++| .||.++.|+|+++.|+||||||++|+.++++. . . +
T Consensus 29 ~~F~~l~l~~------~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~a 102 (513)
T COG0513 29 PEFASLGLSP------ELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSA 102 (513)
T ss_pred CCHhhcCCCH------HHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCce
Confidence 4466555333 667889999999999985 88899999999999999999999987776641 1 2 8
Q ss_pred EEEcccHHHHHHHHHHHHHccccc-----cc-ccccccccc----c-cCCeEEEeee----cccCCCc----eeEEEEcc
Q 003593 322 IYCSPLRLLAMEVFDKVNALGVYC-----SL-LTGQEKKLV----P-FSNHIACTVE----MVSTDEM----YDVAVIDE 382 (808)
Q Consensus 322 lvl~Ptr~La~Qi~~~l~~~g~~~-----~l-~~g~~~~~~----~-~~~~i~~t~e----~l~~~~l----v~~vVIDE 382 (808)
||++||||||.|+++.+..++... .. ++|.....+ . ...++++||. ++....+ +.++|+||
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 999999999999999999886544 23 333332211 1 2445667763 2333322 89999999
Q ss_pred chhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCC----------------cEEEEeeecchhhhhHH
Q 003593 383 IQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDE----------------LHEQHYERFKPLVVEAK 446 (808)
Q Consensus 383 Ah~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~----------------~~~~~~~r~~~~~~~~~ 446 (808)
||+|+|+||..++..++..++..++++++++++.+.+..++.....+ .+.+.|...........
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 99999999999999999999999999999988776666655543322 12222322222111223
Q ss_pred HHHHHHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccccc
Q 003593 447 TLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525 (808)
Q Consensus 447 ~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDi 525 (808)
.|...+.....+.+|||+ ++..+..++..|... |+++..+||+|+|++|.++++.|++ |+.+||||||+++|||||
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~-g~~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLVaTDvaaRGiDi 339 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR-GFKVAALHGDLPQEERDRALEKFKD--GELRVLVATDVAARGLDI 339 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC-CCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEEechhhccCCc
Confidence 444455555556677777 467888889888875 9999999999999999999999975 999999999999999999
Q ss_pred C-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 526 N-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 526 p-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
| |.+|||||+ |.+.+.|+||+|||||+|. .|.+++|+.+.
T Consensus 340 ~~v~~VinyD~---------p~~~e~yvHRiGRTgRaG~---~G~ai~fv~~~ 380 (513)
T COG0513 340 PDVSHVINYDL---------PLDPEDYVHRIGRTGRAGR---KGVAISFVTEE 380 (513)
T ss_pred cccceeEEccC---------CCCHHHheeccCccccCCC---CCeEEEEeCcH
Confidence 8 999999999 9999999999999999999 99999999863
No 13
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-43 Score=379.53 Aligned_cols=316 Identities=18% Similarity=0.236 Sum_probs=242.4
Q ss_pred hhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh----c------
Q 003593 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME----A------ 318 (808)
Q Consensus 251 ~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~----~------ 318 (808)
....|.+..++. .+++++..+||..||||| .||.++-|+|++.+|.||||||.+|+.|+++ .
T Consensus 179 ~~~sF~~mNLSR------PlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~ 252 (691)
T KOG0338|consen 179 MNESFQSMNLSR------PLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAA 252 (691)
T ss_pred HhhhHHhcccch------HHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcc
Confidence 345666666655 678999999999999985 7777899999999999999999997666653 2
Q ss_pred CcEEEEcccHHHHHHHHHHHHHccc----cccccccc-ccccc-----ccCCeEEEeeecc-cC----CC----ceeEEE
Q 003593 319 KKGIYCSPLRLLAMEVFDKVNALGV----YCSLLTGQ-EKKLV-----PFSNHIACTVEMV-ST----DE----MYDVAV 379 (808)
Q Consensus 319 ~~~lvl~Ptr~La~Qi~~~l~~~g~----~~~l~~g~-~~~~~-----~~~~~i~~t~e~l-~~----~~----lv~~vV 379 (808)
-++||++|||+||.|++...+++.. .+++..|. ....+ ....++++||..+ .. .. .+.++|
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 2689999999999999999888754 44443333 22211 1344556665322 11 10 178999
Q ss_pred EccchhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEEEEe--------------eecchhh-hh
Q 003593 380 IDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHY--------------ERFKPLV-VE 444 (808)
Q Consensus 380 IDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~~~--------------~r~~~~~-~~ 444 (808)
+||||+|++.+|...+..++..++..++++++++++.+-++.|+.......+.-+. -|+.|-. ..
T Consensus 333 lDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~d 412 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGD 412 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccc
Confidence 99999999999999999999999999999999999999999888766554443322 2222211 11
Q ss_pred HHHHH-HHHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccc
Q 003593 445 AKTLL-GDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (808)
Q Consensus 445 ~~~ll-~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~G 522 (808)
...++ ..+...-...+|||+ +++.|+.+.- |...+|.++.-+||.|+|++|...++.|++ ++++||||||+++||
T Consensus 413 Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~I-llGLlgl~agElHGsLtQ~QRlesL~kFk~--~eidvLiaTDvAsRG 489 (691)
T KOG0338|consen 413 REAMLASLITRTFQDRTIVFVRTKKQAHRLRI-LLGLLGLKAGELHGSLTQEQRLESLEKFKK--EEIDVLIATDVASRG 489 (691)
T ss_pred cHHHHHHHHHHhcccceEEEEehHHHHHHHHH-HHHHhhchhhhhcccccHHHHHHHHHHHHh--ccCCEEEEechhhcc
Confidence 12333 333444455677777 4555655544 445679999999999999999999999975 999999999999999
Q ss_pred cccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHhcC
Q 003593 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (808)
Q Consensus 523 IDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~ 587 (808)
|||+ |..||||.+ |.+++.|+||+||+.|+|+ .|.+++|+.+++..+.+-+-+
T Consensus 490 LDI~gV~tVINy~m---------P~t~e~Y~HRVGRTARAGR---aGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 490 LDIEGVQTVINYAM---------PKTIEHYLHRVGRTARAGR---AGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred CCccceeEEEeccC---------chhHHHHHHHhhhhhhccc---CcceEEEeccccHHHHHHHHh
Confidence 9997 999999999 9999999999999999999 899999998877776654433
No 14
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-43 Score=378.50 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=254.8
Q ss_pred hhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-----------cC
Q 003593 253 PIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-----------AK 319 (808)
Q Consensus 253 p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-----------~~ 319 (808)
..|++|.++. ++++.|+..+|..||++| .|+.+|+|+||++.|.||||||++||.|+++ +-
T Consensus 69 ~kF~dlpls~------~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGl 142 (758)
T KOG0343|consen 69 KKFADLPLSQ------KTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGL 142 (758)
T ss_pred hhHHhCCCch------HHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCc
Confidence 4566666655 778999999999999985 7888899999999999999999997766653 22
Q ss_pred cEEEEcccHHHHHHHHHHHHHcccccccccccccc---------ccccCCeEEEeeecccCC---------CceeEEEEc
Q 003593 320 KGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK---------LVPFSNHIACTVEMVSTD---------EMYDVAVID 381 (808)
Q Consensus 320 ~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~---------~~~~~~~i~~t~e~l~~~---------~lv~~vVID 381 (808)
.+|||+|||+||.|+++.|++.|....+..|-.++ .+...++++|||..|-.. ..+.++|+|
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLD 222 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLD 222 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEec
Confidence 67999999999999999999998765433333222 234567888987433110 117899999
Q ss_pred cchhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCC-CcEEEEee--------------ecchhhhhHH
Q 003593 382 EIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGD-ELHEQHYE--------------RFKPLVVEAK 446 (808)
Q Consensus 382 EAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~-~~~~~~~~--------------r~~~~~~~~~ 446 (808)
|||+|+||||...+..++..+|+.+++++++++-..-+..+++.... ..++..+. ...++.....
T Consensus 223 EADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~ 302 (758)
T KOG0343|consen 223 EADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID 302 (758)
T ss_pred cHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH
Confidence 99999999999999999999999999999999888888887776332 22222221 1223333345
Q ss_pred HHHHHHhhcCCCCEEEEech-hHHHHHHHHHHH-hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccc
Q 003593 447 TLLGDLRNVRSGDCVVAFSR-REIFEVKMAIEK-HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524 (808)
Q Consensus 447 ~ll~~l~~~~~g~~II~fsr-k~~~~l~~~L~~-~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GID 524 (808)
.|...+..+...+.|||||. +++.-++..+.+ ..|.++..+||.|+|..|..++..|.. .+.-||+|||+++||||
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLD 380 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLD 380 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCC
Confidence 67778888888889999964 566555555554 358999999999999999999999975 78899999999999999
Q ss_pred cC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCH-HHHHHHhcCCchhhH
Q 003593 525 LN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL-DYLIECLKQPFEVVK 593 (808)
Q Consensus 525 ip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~-~~l~~~l~~~~~~~~ 593 (808)
+| |++||++|+ |.++++|+||+||++|.+. .|.++++.++.+ +.+...|++..-+++
T Consensus 381 FpaVdwViQ~DC---------Pedv~tYIHRvGRtAR~~~---~G~sll~L~psEeE~~l~~Lq~k~I~i~ 439 (758)
T KOG0343|consen 381 FPAVDWVIQVDC---------PEDVDTYIHRVGRTARYKE---RGESLLMLTPSEEEAMLKKLQKKKIPIK 439 (758)
T ss_pred CcccceEEEecC---------chhHHHHHHHhhhhhcccC---CCceEEEEcchhHHHHHHHHHHcCCCHH
Confidence 99 999999999 9999999999999999998 899999998766 777777766543333
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-42 Score=397.97 Aligned_cols=320 Identities=21% Similarity=0.212 Sum_probs=240.2
Q ss_pred HHhhcCCCCCCChhhhHHHHhhhcCChhHHHHHHHcCCCchhhhhhhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcch
Q 003593 206 LAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTW 285 (808)
Q Consensus 206 ~~~~i~~~~~p~~~~~f~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~ 285 (808)
.++.+.|...|.|+.+|.++ .++. .+++.|...||..|+++
T Consensus 107 ~~i~~~g~~~p~pi~~f~~~---~l~~------------------------------------~l~~~L~~~g~~~ptpi 147 (518)
T PLN00206 107 LEIHVKGEAVPPPILSFSSC---GLPP------------------------------------KLLLNLETAGYEFPTPI 147 (518)
T ss_pred CCCEecCCCCCchhcCHHhC---CCCH------------------------------------HHHHHHHHcCCCCCCHH
Confidence 45667788899999999876 4433 23455678999999998
Q ss_pred h--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh--------------cCcEEEEcccHHHHHHHHHHHHHccccc----
Q 003593 286 F--PFARVMKRKIIYHCGPTNSGKTYNALQRFME--------------AKKGIYCSPLRLLAMEVFDKVNALGVYC---- 345 (808)
Q Consensus 286 ~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~--------------~~~~lvl~Ptr~La~Qi~~~l~~~g~~~---- 345 (808)
| +++.++.|+|++++||||||||++|+.+++. ++.+|||+|||+||.|+++.++.++...
T Consensus 148 Q~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~ 227 (518)
T PLN00206 148 QMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKT 227 (518)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceE
Confidence 5 8888999999999999999999997776642 3478999999999999999988775432
Q ss_pred c-ccccccccc-----cccCCeEEEeeecc----cCC----CceeEEEEccchhhhcccchhHHHHHHhhccccceeccC
Q 003593 346 S-LLTGQEKKL-----VPFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCG 411 (808)
Q Consensus 346 ~-l~~g~~~~~-----~~~~~~i~~t~e~l----~~~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~ 411 (808)
. +++|..... .....++++|++.+ ... ..+.+|||||||+|++++|...+..++..++. .+.++.
T Consensus 228 ~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~-~q~l~~ 306 (518)
T PLN00206 228 ALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQ-PQVLLF 306 (518)
T ss_pred EEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCC-CcEEEE
Confidence 2 333433221 12245677887543 221 12899999999999999999888888877754 456667
Q ss_pred CchHHHHHHHHhhhcCCCcEE--------------EEeeecchhhhhHHHHHHHHhhcC--CCCEEEEe-chhHHHHHHH
Q 003593 412 DPSVLDVVRKICSETGDELHE--------------QHYERFKPLVVEAKTLLGDLRNVR--SGDCVVAF-SRREIFEVKM 474 (808)
Q Consensus 412 s~~~~~~i~~l~~~~~~~~~~--------------~~~~r~~~~~~~~~~ll~~l~~~~--~g~~II~f-srk~~~~l~~ 474 (808)
++++...+..++.......+. +.+... ........+...+.... .+.+|||+ ++..++.++.
T Consensus 307 SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~-~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~ 385 (518)
T PLN00206 307 SATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWV-ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLAN 385 (518)
T ss_pred EeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEec-cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHH
Confidence 777666555555443322221 111111 11112234555554322 34567777 5788889999
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHH
Q 003593 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQ 553 (808)
Q Consensus 475 ~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Q 553 (808)
.|....|+.+..+||+|++++|..+++.|++ |+++|||||++++||||+| |++|||||+ |.++++|+|
T Consensus 386 ~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~ILVaTdvl~rGiDip~v~~VI~~d~---------P~s~~~yih 454 (518)
T PLN00206 386 AITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPVIVATGVLGRGVDLLRVRQVIIFDM---------PNTIKEYIH 454 (518)
T ss_pred HHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEEecHhhccCCcccCCEEEEeCC---------CCCHHHHHH
Confidence 8876669999999999999999999999975 9999999999999999997 999999999 999999999
Q ss_pred HhCccCCCCCCCCceEEEEEecCCHHH
Q 003593 554 IAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 554 r~GRAGR~G~~~~~G~~i~l~~~d~~~ 580 (808)
|+|||||.|. .|.+++|++++...
T Consensus 455 RiGRaGR~g~---~G~ai~f~~~~~~~ 478 (518)
T PLN00206 455 QIGRASRMGE---KGTAIVFVNEEDRN 478 (518)
T ss_pred hccccccCCC---CeEEEEEEchhHHH
Confidence 9999999998 89999999876544
No 16
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=365.84 Aligned_cols=297 Identities=19% Similarity=0.175 Sum_probs=230.0
Q ss_pred HHHHHHHHCCCCCCcch--hhhHHHhCCCeEEEEecCCCcHHHHHHHHHH-------------hcCcEEEEcccHHHHHH
Q 003593 269 RFRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFM-------------EAKKGIYCSPLRLLAME 333 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~--~~i~~~l~grdvlv~apTGSGKTl~~L~~L~-------------~~~~~lvl~Ptr~La~Q 333 (808)
.+++.+++.||.+|||+ |++|.+|+|+|++++|.||+|||+++|.+-+ .++.+|+++|||+||.|
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalq 309 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQ 309 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHH
Confidence 45677889999999998 5778889999999999999999999765422 13478999999999999
Q ss_pred HHHHHHHc---c-ccccccccccccccc-----cCCeEEEeeecccCCC--------ceeEEEEccchhhhcccchhHHH
Q 003593 334 VFDKVNAL---G-VYCSLLTGQEKKLVP-----FSNHIACTVEMVSTDE--------MYDVAVIDEIQMMSDACRGYAWT 396 (808)
Q Consensus 334 i~~~l~~~---g-~~~~l~~g~~~~~~~-----~~~~i~~t~e~l~~~~--------lv~~vVIDEAh~i~d~~~g~~~~ 396 (808)
+.-...++ | ..+++++|.....+- ...++++||..+.... .+.++|+||||+|+||+|.++++
T Consensus 310 ie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIr 389 (629)
T KOG0336|consen 310 IEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIR 389 (629)
T ss_pred HHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHH
Confidence 99888876 3 345566666554321 2345566664443211 18899999999999999999999
Q ss_pred HHHhhccccceeccCCchHHHHHHHHhhhcCCCcEEEEee-----------e--cchhhhhHHHHHHH-HhhcCCCCEEE
Q 003593 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE-----------R--FKPLVVEAKTLLGD-LRNVRSGDCVV 462 (808)
Q Consensus 397 ~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~~~~-----------r--~~~~~~~~~~ll~~-l~~~~~g~~II 462 (808)
++++-+.+++++++.++++.+-+++|+.....+.+..... . +.+...+.-.++.. +.+....+.+|
T Consensus 390 killdiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvI 469 (629)
T KOG0336|consen 390 KILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVI 469 (629)
T ss_pred HHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEE
Confidence 9999999999999999999988888877654433222111 0 11112222233333 34555555555
Q ss_pred Ee-ch-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCC
Q 003593 463 AF-SR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (808)
Q Consensus 463 ~f-sr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~d 539 (808)
+| ++ ..++.|...+.- .|+.+-.+||+-.+.+|+..++.|+ +|+++||||||+++||||+| |.+|+|||.
T Consensus 470 iFv~~K~~AD~LSSd~~l-~gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrILvaTDlaSRGlDv~DiTHV~NyDF---- 542 (629)
T KOG0336|consen 470 IFVSRKVMADHLSSDFCL-KGISSQSLHGNREQSDREMALEDFK--SGEVRILVATDLASRGLDVPDITHVYNYDF---- 542 (629)
T ss_pred EEEechhhhhhccchhhh-cccchhhccCChhhhhHHHHHHhhh--cCceEEEEEechhhcCCCchhcceeeccCC----
Confidence 55 54 456777777764 4999999999999999999999995 59999999999999999997 999999999
Q ss_pred CCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHH
Q 003593 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~ 580 (808)
|.++++|+||+||+||+|+ .|.+++|++..+-.
T Consensus 543 -----P~nIeeYVHRvGrtGRaGr---~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 543 -----PRNIEEYVHRVGRTGRAGR---TGTSISFLTRNDWS 575 (629)
T ss_pred -----CccHHHHHHHhcccccCCC---CcceEEEEehhhHH
Confidence 9999999999999999999 89999999765433
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.9e-42 Score=388.13 Aligned_cols=308 Identities=16% Similarity=0.210 Sum_probs=228.6
Q ss_pred hhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh--------------
Q 003593 254 IFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-------------- 317 (808)
Q Consensus 254 ~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-------------- 317 (808)
.|.++++.. .+++++...||..|+++| +++.++.|+|++++||||||||++|+.+++.
T Consensus 9 ~f~~~~l~~------~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 9 KFSDFALHP------QVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred CHhhCCCCH------HHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 455555433 566888999999999985 8888999999999999999999998766642
Q ss_pred cCcEEEEcccHHHHHHHHHHHHHcc----ccccccccccccc-----c-ccCCeEEEeeeccc----CC----CceeEEE
Q 003593 318 AKKGIYCSPLRLLAMEVFDKVNALG----VYCSLLTGQEKKL-----V-PFSNHIACTVEMVS----TD----EMYDVAV 379 (808)
Q Consensus 318 ~~~~lvl~Ptr~La~Qi~~~l~~~g----~~~~l~~g~~~~~-----~-~~~~~i~~t~e~l~----~~----~lv~~vV 379 (808)
++++|||+|||+||.|+++.+..++ +.+.++.|..... . ....++++|++.+. .. ..+.++|
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lV 162 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVV 162 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEE
Confidence 2468999999999999999887764 4444444432211 1 12356778875441 11 1289999
Q ss_pred EccchhhhcccchhHHHHHHhhccc--cceeccCCchHHHHHHHHhhhcC-CCcEE-------------EEeeecchhhh
Q 003593 380 IDEIQMMSDACRGYAWTRALLGLMA--DEIHLCGDPSVLDVVRKICSETG-DELHE-------------QHYERFKPLVV 443 (808)
Q Consensus 380 IDEAh~i~d~~~g~~~~~~l~~l~~--~~i~l~~s~~~~~~i~~l~~~~~-~~~~~-------------~~~~r~~~~~~ 443 (808)
|||||++++.+|..++..++..++. .++.++++++....+..+..... ..... +.+. ......
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~-~~~~~~ 241 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF-YPSNEE 241 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE-eCCHHH
Confidence 9999999999999999988888875 34456666665444443332211 11111 1111 111111
Q ss_pred hHHHHHHHHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccc
Q 003593 444 EAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (808)
Q Consensus 444 ~~~~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~G 522 (808)
....+...+.......+|||+ ++..|+.++..|... |+.+..+||+|++++|..+++.|++ |+++||||||+++||
T Consensus 242 k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-g~~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLVaTdv~~rG 318 (423)
T PRK04837 242 KMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD-GHRVGLLTGDVAQKKRLRILEEFTR--GDLDILVATDVAARG 318 (423)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC-CCcEEEecCCCChhHHHHHHHHHHc--CCCcEEEEechhhcC
Confidence 122344445545556677777 568899999999775 9999999999999999999999965 999999999999999
Q ss_pred cccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 523 IDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
||+| |++|||||+ |.+.++|+||+|||||+|. .|.|++|+++++.....
T Consensus 319 iDip~v~~VI~~d~---------P~s~~~yiqR~GR~gR~G~---~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 319 LHIPAVTHVFNYDL---------PDDCEDYVHRIGRTGRAGA---SGHSISLACEEYALNLP 368 (423)
T ss_pred CCccccCEEEEeCC---------CCchhheEeccccccCCCC---CeeEEEEeCHHHHHHHH
Confidence 9998 999999999 9999999999999999999 89999999876544433
No 18
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-42 Score=362.39 Aligned_cols=309 Identities=20% Similarity=0.222 Sum_probs=237.6
Q ss_pred hhhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcch--hhhHHHhCCCeEEEEecCCCcHHHHHHHHHH-----------
Q 003593 250 FLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFM----------- 316 (808)
Q Consensus 250 ~~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~--~~i~~~l~grdvlv~apTGSGKTl~~L~~L~----------- 316 (808)
.+.|...+|...+||..+ ++.+++.|+..|||+ |-+|.+++|||+|++|-||||||++|..+++
T Consensus 164 ~ipPPIksF~eMKFP~~~---L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP 240 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPL---LRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP 240 (610)
T ss_pred CCCCchhhhhhccCCHHH---HHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc
Confidence 344555566666677644 466778999999997 5788899999999999999999999544432
Q ss_pred ----hcCcEEEEcccHHHHHHHHHHHHHc-------ccc---c-cccccccccc----cccCCeE-EEeee----cccCC
Q 003593 317 ----EAKKGIYCSPLRLLAMEVFDKVNAL-------GVY---C-SLLTGQEKKL----VPFSNHI-ACTVE----MVSTD 372 (808)
Q Consensus 317 ----~~~~~lvl~Ptr~La~Qi~~~l~~~-------g~~---~-~l~~g~~~~~----~~~~~~i-~~t~e----~l~~~ 372 (808)
+++.+|||||.|+||.|+++-+..+ |.+ + -+++|-..+. +....|+ ++||. |+...
T Consensus 241 f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 241 FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh
Confidence 3668999999999999999887665 221 2 2344433332 2223333 34442 22221
Q ss_pred Cc----eeEEEEccchhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEEEEeeecchh-------
Q 003593 373 EM----YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPL------- 441 (808)
Q Consensus 373 ~l----v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~~~~r~~~~------- 441 (808)
.. +.++++||||+|.|+||..+++.++..+...++++++++++..-+..++.......+.....|-...
T Consensus 321 ~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe 400 (610)
T KOG0341|consen 321 IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE 400 (610)
T ss_pred hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH
Confidence 11 7899999999999999999999999999999999999999999999888876665555544442211
Q ss_pred --hhh-HH---HHHHHHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEE
Q 003593 442 --VVE-AK---TLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514 (808)
Q Consensus 442 --~~~-~~---~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILV 514 (808)
++. .. .+++.|++..+ ..+||+ .+.+++.+..+|.-. |..++.+|||..+++|...++.|+. |+.+|||
T Consensus 401 vEyVkqEaKiVylLeCLQKT~P-pVLIFaEkK~DVD~IhEYLLlK-GVEavaIHGGKDQedR~~ai~afr~--gkKDVLV 476 (610)
T KOG0341|consen 401 VEYVKQEAKIVYLLECLQKTSP-PVLIFAEKKADVDDIHEYLLLK-GVEAVAIHGGKDQEDRHYAIEAFRA--GKKDVLV 476 (610)
T ss_pred HHHHHhhhhhhhHHHHhccCCC-ceEEEeccccChHHHHHHHHHc-cceeEEeecCcchhHHHHHHHHHhc--CCCceEE
Confidence 111 11 34444444333 355555 457889999998865 9999999999999999999999976 9999999
Q ss_pred ECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 515 ASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 515 ATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
|||+++.|+|+| |.+|||||+ |..++.|+||+||+||.|+ .|.+++|+...
T Consensus 477 ATDVASKGLDFp~iqHVINyDM---------P~eIENYVHRIGRTGRsg~---~GiATTfINK~ 528 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDM---------PEEIENYVHRIGRTGRSGK---TGIATTFINKN 528 (610)
T ss_pred EecchhccCCCccchhhccCCC---------hHHHHHHHHHhcccCCCCC---cceeeeeeccc
Confidence 999999999998 999999999 9999999999999999999 99999999643
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.8e-41 Score=384.53 Aligned_cols=298 Identities=18% Similarity=0.221 Sum_probs=226.1
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHhc-------------CcEEEEcccHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFMEA-------------KKGIYCSPLRLLAME 333 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~~-------------~~~lvl~Ptr~La~Q 333 (808)
.++++|.++||..||++| +++.++.|+|++++||||||||++|+.+++.. .++|||+|||+||.|
T Consensus 11 ~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Q 90 (456)
T PRK10590 11 DILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQ 90 (456)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHH
Confidence 567889999999999985 88889999999999999999999977766421 268999999999999
Q ss_pred HHHHHHHcccc----ccccccccc-cc-----cccCCeEEEeeecccC----C----CceeEEEEccchhhhcccchhHH
Q 003593 334 VFDKVNALGVY----CSLLTGQEK-KL-----VPFSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAW 395 (808)
Q Consensus 334 i~~~l~~~g~~----~~l~~g~~~-~~-----~~~~~~i~~t~e~l~~----~----~lv~~vVIDEAh~i~d~~~g~~~ 395 (808)
+++.+..+... +..+.|... .. .....++++|++.+.. . ..+++|||||||++++++|..++
T Consensus 91 i~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 91 IGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred HHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHH
Confidence 99999886432 223333322 11 1234577888865421 1 12899999999999999999999
Q ss_pred HHHHhhccccceeccCCchHHHHHHHHhhhcCCCc--------------EEEEeeecchhhhhHHHHHHHH-hhcCCCCE
Q 003593 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGDEL--------------HEQHYERFKPLVVEAKTLLGDL-RNVRSGDC 460 (808)
Q Consensus 396 ~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~--------------~~~~~~r~~~~~~~~~~ll~~l-~~~~~g~~ 460 (808)
+.++..++...+.++++++....+..+........ +.+.+..... .....++..+ .......+
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~--~~k~~~l~~l~~~~~~~~~ 248 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK--KRKRELLSQMIGKGNWQQV 248 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH--HHHHHHHHHHHHcCCCCcE
Confidence 99999998888888877776555444443322211 1111111111 1112333333 33334556
Q ss_pred EEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccC
Q 003593 461 VVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKY 538 (808)
Q Consensus 461 II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~ 538 (808)
|||+ ++..+..++..|.+. ++.+..+||+|++++|..+++.|++ |+++|||||+++++|||+| |++||||++
T Consensus 249 lVF~~t~~~~~~l~~~L~~~-g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaTdv~~rGiDip~v~~VI~~~~--- 322 (456)
T PRK10590 249 LVFTRTKHGANHLAEQLNKD-GIRSAAIHGNKSQGARTRALADFKS--GDIRVLVATDIAARGLDIEELPHVVNYEL--- 322 (456)
T ss_pred EEEcCcHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEccHHhcCCCcccCCEEEEeCC---
Confidence 7776 467789999999765 9999999999999999999999965 9999999999999999998 999999999
Q ss_pred CCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 539 dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
|.+.++|+||+|||||+|. .|.|++|+..++..+.+
T Consensus 323 ------P~~~~~yvqR~GRaGR~g~---~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 323 ------PNVPEDYVHRIGRTGRAAA---TGEALSLVCVDEHKLLR 358 (456)
T ss_pred ------CCCHHHhhhhccccccCCC---CeeEEEEecHHHHHHHH
Confidence 9999999999999999999 89999999876555443
No 20
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.1e-42 Score=369.29 Aligned_cols=304 Identities=18% Similarity=0.173 Sum_probs=237.9
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh----------cC-cEEEEcccHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME----------AK-KGIYCSPLRLLAMEVF 335 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~----------~~-~~lvl~Ptr~La~Qi~ 335 (808)
.++++++.+||..+|++| .++.++.|+|+++.|.||||||++||.+..+ .+ .+|||+|||+||.|++
T Consensus 92 ~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~ 171 (543)
T KOG0342|consen 92 LTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIF 171 (543)
T ss_pred HHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHH
Confidence 345789999999999986 5666799999999999999999997665542 12 5689999999999999
Q ss_pred HHHHHc-----cccccccccccccccc-cCCeEEEeeecccCCCc--------------eeEEEEccchhhhcccchhHH
Q 003593 336 DKVNAL-----GVYCSLLTGQEKKLVP-FSNHIACTVEMVSTDEM--------------YDVAVIDEIQMMSDACRGYAW 395 (808)
Q Consensus 336 ~~l~~~-----g~~~~l~~g~~~~~~~-~~~~i~~t~e~l~~~~l--------------v~~vVIDEAh~i~d~~~g~~~ 395 (808)
.+++++ ++.++++.|....... ....-.|.+.+++|+++ +.++||||||+++|+||..++
T Consensus 172 ~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di 251 (543)
T KOG0342|consen 172 AEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDV 251 (543)
T ss_pred HHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHH
Confidence 999886 3445554444332211 11111333344444443 679999999999999999999
Q ss_pred HHHHhhccccceeccCCchHHHHHHHHhhhcCC--CcEE---------------EEeeecchhhhhHHHHHHHHhhcCC-
Q 003593 396 TRALLGLMADEIHLCGDPSVLDVVRKICSETGD--ELHE---------------QHYERFKPLVVEAKTLLGDLRNVRS- 457 (808)
Q Consensus 396 ~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~--~~~~---------------~~~~r~~~~~~~~~~ll~~l~~~~~- 457 (808)
.+++..++..+++++++++...-+++++..... ...+ |.|. ..+.....-.++..|+++..
T Consensus 252 ~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyv-v~~~~~~f~ll~~~LKk~~~~ 330 (543)
T KOG0342|consen 252 EQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYV-VAPSDSRFSLLYTFLKKNIKR 330 (543)
T ss_pred HHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEE-eccccchHHHHHHHHHHhcCC
Confidence 999999999999999999888777777653221 1111 1111 11111112345556655555
Q ss_pred CCEEEEechhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCc
Q 003593 458 GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS 536 (808)
Q Consensus 458 g~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~ 536 (808)
.++||||+......+...|.+...++|..+||+++|..|..+...|++ .+..|||||||++||+|+| |+.||++|+
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k--aesgIL~cTDVaARGlD~P~V~~VvQ~~~- 407 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK--AESGILVCTDVAARGLDIPDVDWVVQYDP- 407 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh--cccceEEecchhhccCCCCCceEEEEeCC-
Confidence 677888888888888888888889999999999999999999999975 8899999999999999998 999999999
Q ss_pred cCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHhcC
Q 003593 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (808)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~ 587 (808)
|.+.++|+||+|||||.|. .|.+++|..+++..+.+.+++
T Consensus 408 --------P~d~~~YIHRvGRTaR~gk---~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 408 --------PSDPEQYIHRVGRTAREGK---EGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred --------CCCHHHHHHHhccccccCC---CceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999 899999999998888888763
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.3e-40 Score=382.54 Aligned_cols=297 Identities=21% Similarity=0.198 Sum_probs=232.4
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-------cCcEEEEcccHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-------~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
.+++++..+||..|+|+| +++.++.|+|++++||||||||++++.+++. ..++||++|||+||.|+.+.++
T Consensus 14 ~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~ 93 (460)
T PRK11776 14 ALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIR 93 (460)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHH
Confidence 456788999999999985 8888999999999999999999997776653 2368999999999999999998
Q ss_pred Hcc-----ccccccccccccc------cccCCeEEEeeeccc----CCC----ceeEEEEccchhhhcccchhHHHHHHh
Q 003593 340 ALG-----VYCSLLTGQEKKL------VPFSNHIACTVEMVS----TDE----MYDVAVIDEIQMMSDACRGYAWTRALL 400 (808)
Q Consensus 340 ~~g-----~~~~l~~g~~~~~------~~~~~~i~~t~e~l~----~~~----lv~~vVIDEAh~i~d~~~g~~~~~~l~ 400 (808)
.++ ..+..++|..... .....++++|+..+. ... .+++|||||||+|++++|...+..++.
T Consensus 94 ~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~ 173 (460)
T PRK11776 94 RLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIR 173 (460)
T ss_pred HHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHH
Confidence 763 3344444432211 123456778875442 221 289999999999999999999999999
Q ss_pred hccccceeccCCchHHHHHHHHhhhcCCCc-------------EEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEe-ch
Q 003593 401 GLMADEIHLCGDPSVLDVVRKICSETGDEL-------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SR 466 (808)
Q Consensus 401 ~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~-------------~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f-sr 466 (808)
.++...+.++++++..+.+..+........ +.+.+...... .....+...+....++.+|||+ ++
T Consensus 174 ~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ll~~~~~~~~lVF~~t~ 252 (460)
T PRK11776 174 QAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPD-ERLPALQRLLLHHQPESCVVFCNTK 252 (460)
T ss_pred hCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcH-HHHHHHHHHHHhcCCCceEEEECCH
Confidence 999888888888887666655554322111 22222222211 1223455555556666777777 57
Q ss_pred hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCcccc
Q 003593 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIP 545 (808)
Q Consensus 467 k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P 545 (808)
..++.++..|.+. ++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+| |++||++|+ |
T Consensus 253 ~~~~~l~~~L~~~-~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~vLVaTdv~~rGiDi~~v~~VI~~d~---------p 320 (460)
T PRK11776 253 KECQEVADALNAQ-GFSALALHGDLEQRDRDQVLVRFAN--RSCSVLVATDVAARGLDIKALEAVINYEL---------A 320 (460)
T ss_pred HHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEecccccccchhcCCeEEEecC---------C
Confidence 8899999999875 9999999999999999999999975 9999999999999999998 999999999 9
Q ss_pred CCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHH
Q 003593 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (808)
Q Consensus 546 ~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l 581 (808)
.+.++|+||+|||||+|. .|.|++|+++++...
T Consensus 321 ~~~~~yiqR~GRtGR~g~---~G~ai~l~~~~e~~~ 353 (460)
T PRK11776 321 RDPEVHVHRIGRTGRAGS---KGLALSLVAPEEMQR 353 (460)
T ss_pred CCHhHhhhhcccccCCCC---cceEEEEEchhHHHH
Confidence 999999999999999999 899999998765443
No 22
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.6e-40 Score=388.70 Aligned_cols=296 Identities=20% Similarity=0.230 Sum_probs=224.1
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh--------------cCcEEEEcccHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME--------------AKKGIYCSPLRLLAM 332 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~--------------~~~~lvl~Ptr~La~ 332 (808)
.++++|.++||..||++| .|+.++.|+|++++||||||||++|+.+++. .+++|||+|||+||.
T Consensus 19 ~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~ 98 (572)
T PRK04537 19 ALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAI 98 (572)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHH
Confidence 567888999999999985 8888999999999999999999997776643 257899999999999
Q ss_pred HHHHHHHHcccc----ccccccccccc-----c-ccCCeEEEeeeccc----CC-----CceeEEEEccchhhhcccchh
Q 003593 333 EVFDKVNALGVY----CSLLTGQEKKL-----V-PFSNHIACTVEMVS----TD-----EMYDVAVIDEIQMMSDACRGY 393 (808)
Q Consensus 333 Qi~~~l~~~g~~----~~l~~g~~~~~-----~-~~~~~i~~t~e~l~----~~-----~lv~~vVIDEAh~i~d~~~g~ 393 (808)
|+++.+..++.. +..++|..... . ....++++|++.+. .. ..+++|||||||+|++++|..
T Consensus 99 Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~ 178 (572)
T PRK04537 99 QIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIK 178 (572)
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHH
Confidence 999999987544 33444432211 1 12357788875442 11 127899999999999999999
Q ss_pred HHHHHHhhccc--cceeccCCchHHHHHHHHhhhcCCC--------------cEEEEeeecchhhhhHHHHHHHHhhcCC
Q 003593 394 AWTRALLGLMA--DEIHLCGDPSVLDVVRKICSETGDE--------------LHEQHYERFKPLVVEAKTLLGDLRNVRS 457 (808)
Q Consensus 394 ~~~~~l~~l~~--~~i~l~~s~~~~~~i~~l~~~~~~~--------------~~~~~~~r~~~~~~~~~~ll~~l~~~~~ 457 (808)
++..++..++. ..+.+++++++...+..+....... .+.+.+... ........++..+.....
T Consensus 179 ~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~L~~ll~~~~~ 257 (572)
T PRK04537 179 DIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTLLLGLLSRSEG 257 (572)
T ss_pred HHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHHHHHHHhcccC
Confidence 99988888875 4566666766544333333221111 111111111 111122344445554455
Q ss_pred CCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCC
Q 003593 458 GDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (808)
Q Consensus 458 g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~ 535 (808)
..+|||+ ++..+..++..|.+. ++.+..+||+|++.+|..+++.|++ |+++||||||++++|||+| |++|||||+
T Consensus 258 ~k~LVF~nt~~~ae~l~~~L~~~-g~~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLVaTdv~arGIDip~V~~VInyd~ 334 (572)
T PRK04537 258 ARTMVFVNTKAFVERVARTLERH-GYRVGVLSGDVPQKKRESLLNRFQK--GQLEILVATDVAARGLHIDGVKYVYNYDL 334 (572)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEehhhhcCCCccCCCEEEEcCC
Confidence 5677777 568899999999875 9999999999999999999999965 9999999999999999998 999999999
Q ss_pred ccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHH
Q 003593 536 SKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 536 ~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~ 580 (808)
|.++++|+||+|||||.|. .|.|++|+.+++..
T Consensus 335 ---------P~s~~~yvqRiGRaGR~G~---~G~ai~~~~~~~~~ 367 (572)
T PRK04537 335 ---------PFDAEDYVHRIGRTARLGE---EGDAISFACERYAM 367 (572)
T ss_pred ---------CCCHHHHhhhhcccccCCC---CceEEEEecHHHHH
Confidence 9999999999999999999 89999999775443
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=346.34 Aligned_cols=314 Identities=18% Similarity=0.254 Sum_probs=238.0
Q ss_pred hhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----hcC---cEEE
Q 003593 253 PIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAK---KGIY 323 (808)
Q Consensus 253 p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~~~---~~lv 323 (808)
..|..+++.. =+.+.++.+|+..|||+| +||.+|.|+|+|++|.||||||+++..+++ +.+ -++|
T Consensus 7 ~~F~~LGl~~------Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalv 80 (442)
T KOG0340|consen 7 KPFSILGLSP------WLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALV 80 (442)
T ss_pred CchhhcCccH------HHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEE
Confidence 3456666554 234667899999999996 899999999999999999999999544444 344 4689
Q ss_pred EcccHHHHHHHHHHHHHcccc----cccccccccc-----ccccCCe-EEEeeecccCC------------CceeEEEEc
Q 003593 324 CSPLRLLAMEVFDKVNALGVY----CSLLTGQEKK-----LVPFSNH-IACTVEMVSTD------------EMYDVAVID 381 (808)
Q Consensus 324 l~Ptr~La~Qi~~~l~~~g~~----~~l~~g~~~~-----~~~~~~~-i~~t~e~l~~~------------~lv~~vVID 381 (808)
++|||+||.|+.++|..+|.. ++++.|.... .....+| +++|+..+.+. ..+.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999988655 4444444321 1223344 45666544321 118999999
Q ss_pred cchhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEEEEee---------------ecchhhhhHH
Q 003593 382 EIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYE---------------RFKPLVVEAK 446 (808)
Q Consensus 382 EAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~~~~---------------r~~~~~~~~~ 446 (808)
|||.+++..|-.++..+...+|+.++++++++++.+.+..+........+...+. -+.+..+...
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 9999999999999999999999999999999999988887654332221111111 1112222223
Q ss_pred HHHHHHh---hcCCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccc
Q 003593 447 TLLGDLR---NVRSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (808)
Q Consensus 447 ~ll~~l~---~~~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~G 522 (808)
.++..|. +...+.++||.++ ++|..++..|. .+++.+..+||.|++.+|...+.+|+. +..+||||||+++||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~-~le~r~~~lHs~m~Q~eR~~aLsrFrs--~~~~iliaTDVAsRG 317 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLK-NLEVRVVSLHSQMPQKERLAALSRFRS--NAARILIATDVASRG 317 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHh-hhceeeeehhhcchHHHHHHHHHHHhh--cCccEEEEechhhcC
Confidence 4444443 3345667777765 55555655555 469999999999999999999999965 999999999999999
Q ss_pred cccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHhcC
Q 003593 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (808)
Q Consensus 523 IDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~ 587 (808)
+||| |+.|||+|. |.++.+|+||+||++|+|+ .|.++.++++.+..+...+++
T Consensus 318 LDIP~V~LVvN~di---------Pr~P~~yiHRvGRtARAGR---~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 318 LDIPTVELVVNHDI---------PRDPKDYIHRVGRTARAGR---KGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred CCCCceeEEEecCC---------CCCHHHHHHhhcchhcccC---CcceEEEechhhHHHHHHHHH
Confidence 9999 999999999 9999999999999999999 899999999877776666543
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.7e-40 Score=387.95 Aligned_cols=301 Identities=18% Similarity=0.214 Sum_probs=231.5
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-------cCcEEEEcccHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-------~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
.++++|.++||..|+++| .++.++.|+|+|++||||||||++++.+++. .+++||++|||+||.|+++.+.
T Consensus 16 ~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~ 95 (629)
T PRK11634 16 PILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMT 95 (629)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHH
Confidence 566888999999999985 7888899999999999999999997666542 3478999999999999999988
Q ss_pred Hcc-----cccccccccc-ccc-----cccCCeEEEeeecc----cCC----CceeEEEEccchhhhcccchhHHHHHHh
Q 003593 340 ALG-----VYCSLLTGQE-KKL-----VPFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTRALL 400 (808)
Q Consensus 340 ~~g-----~~~~l~~g~~-~~~-----~~~~~~i~~t~e~l----~~~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~ 400 (808)
.+. +.+..+.|.. ... .....++++|+..+ ... ..+.+|||||||+|++++|..++..++.
T Consensus 96 ~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 96 DFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred HHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 763 3333333332 211 11345677887443 221 1288999999999999999999999999
Q ss_pred hccccceeccCCchHHHHHHHHhhhcCCC--------------cEEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEe-c
Q 003593 401 GLMADEIHLCGDPSVLDVVRKICSETGDE--------------LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-S 465 (808)
Q Consensus 401 ~l~~~~i~l~~s~~~~~~i~~l~~~~~~~--------------~~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f-s 465 (808)
.++...+.++++++..+.+..+....... .+.+.|..... ......+...+.......+|||| +
T Consensus 176 ~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~L~~~~~~~~IVF~~t 254 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRT 254 (629)
T ss_pred hCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHHHHhcCCCCEEEEecc
Confidence 99988888888887666555544432211 11122211111 11223455556555556677777 5
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccc
Q 003593 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKII 544 (808)
Q Consensus 466 rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~ 544 (808)
+..+..++..|.+. |+.+..+||+|++.+|.++++.|+. |+++|||||+++++|||+| |++|||||+
T Consensus 255 k~~a~~l~~~L~~~-g~~~~~lhgd~~q~~R~~il~~Fr~--G~~~ILVATdv~arGIDip~V~~VI~~d~--------- 322 (629)
T PRK11634 255 KNATLEVAEALERN-GYNSAALNGDMNQALREQTLERLKD--GRLDILIATDVAARGLDVERISLVVNYDI--------- 322 (629)
T ss_pred HHHHHHHHHHHHhC-CCCEEEeeCCCCHHHHHHHHHHHhC--CCCCEEEEcchHhcCCCcccCCEEEEeCC---------
Confidence 78899999999875 9999999999999999999999965 9999999999999999998 999999999
Q ss_pred cCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHh
Q 003593 545 PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (808)
Q Consensus 545 P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l 585 (808)
|.+.++|+||+|||||+|+ .|.|++|+.+.+..+.+.+
T Consensus 323 P~~~e~yvqRiGRtGRaGr---~G~ai~~v~~~e~~~l~~i 360 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGR---AGRALLFVENRERRLLRNI 360 (629)
T ss_pred CCCHHHHHHHhccccCCCC---cceEEEEechHHHHHHHHH
Confidence 9999999999999999999 8999999987655554444
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.8e-40 Score=374.03 Aligned_cols=297 Identities=19% Similarity=0.270 Sum_probs=223.1
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-----------cCcEEEEcccHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-----------AKKGIYCSPLRLLAMEVF 335 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-----------~~~~lvl~Ptr~La~Qi~ 335 (808)
.+++++..+||..|+++| .++.++.|+|++++||||||||++|+.+++. .+++||++||++||.|++
T Consensus 11 ~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~ 90 (434)
T PRK11192 11 SLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVA 90 (434)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHH
Confidence 566889999999999985 7788999999999999999999997666542 247899999999999999
Q ss_pred HHHHHcc----ccccccccccccc------cccCCeEEEeeeccc----CC----CceeEEEEccchhhhcccchhHHHH
Q 003593 336 DKVNALG----VYCSLLTGQEKKL------VPFSNHIACTVEMVS----TD----EMYDVAVIDEIQMMSDACRGYAWTR 397 (808)
Q Consensus 336 ~~l~~~g----~~~~l~~g~~~~~------~~~~~~i~~t~e~l~----~~----~lv~~vVIDEAh~i~d~~~g~~~~~ 397 (808)
+.+..++ +.+..++|..... .....++++|+..+. .. ..+++|||||||+|++++|+..+..
T Consensus 91 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 91 DQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred HHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 9988763 4455555543211 112356778875432 11 2288999999999999999999998
Q ss_pred HHhhccccceeccCCchHH-HHHHHHhhhcCCCc--------------EEEEeeecchhhhhHHHHHHHHhhcCCCCEEE
Q 003593 398 ALLGLMADEIHLCGDPSVL-DVVRKICSETGDEL--------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVV 462 (808)
Q Consensus 398 ~l~~l~~~~i~l~~s~~~~-~~i~~l~~~~~~~~--------------~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II 462 (808)
+...++...+.++++++.. ..+..+........ +.+.+............+...+.....+.+||
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lV 250 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIV 250 (434)
T ss_pred HHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 8888777767776666543 23333333322111 11222111111111223333333335566777
Q ss_pred Ee-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCC
Q 003593 463 AF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNG 540 (808)
Q Consensus 463 ~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg 540 (808)
|+ ++..+..++..|... |+.+..+||+|++.+|..+++.|++ |+++||||||++++|||+| |++|||+|+
T Consensus 251 F~~s~~~~~~l~~~L~~~-~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~vLVaTd~~~~GiDip~v~~VI~~d~----- 322 (434)
T PRK11192 251 FVRTRERVHELAGWLRKA-GINCCYLEGEMVQAKRNEAIKRLTD--GRVNVLVATDVAARGIDIDDVSHVINFDM----- 322 (434)
T ss_pred EeCChHHHHHHHHHHHhC-CCCEEEecCCCCHHHHHHHHHHHhC--CCCcEEEEccccccCccCCCCCEEEEECC-----
Confidence 77 568899999999874 8999999999999999999999965 9999999999999999998 999999999
Q ss_pred CccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHH
Q 003593 541 DKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 541 ~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~ 580 (808)
|.+.+.|+||+|||||+|. .|.+++|++.++..
T Consensus 323 ----p~s~~~yiqr~GR~gR~g~---~g~ai~l~~~~d~~ 355 (434)
T PRK11192 323 ----PRSADTYLHRIGRTGRAGR---KGTAISLVEAHDHL 355 (434)
T ss_pred ----CCCHHHHhhcccccccCCC---CceEEEEecHHHHH
Confidence 9999999999999999999 89999999765443
No 26
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-40 Score=335.57 Aligned_cols=312 Identities=18% Similarity=0.245 Sum_probs=240.8
Q ss_pred hhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHH----HHHHHH---hcCcE
Q 003593 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN----ALQRFM---EAKKG 321 (808)
Q Consensus 251 ~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~----~L~~L~---~~~~~ 321 (808)
..|.|.+.+++. .+++.+...||..|+.+| +++.+++|+||++.|..|+|||.+ .|+.+- +.-++
T Consensus 25 v~~~F~~Mgl~e------dlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~ 98 (400)
T KOG0328|consen 25 VIPTFDDMGLKE------DLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQA 98 (400)
T ss_pred cccchhhcCchH------HHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeE
Confidence 346777776655 677889999999999986 888899999999999999999987 344432 23478
Q ss_pred EEEcccHHHHHHHHHHHHHcccccc-----cccccccc----ccccCCeEE-Eee----ecccCCCc----eeEEEEccc
Q 003593 322 IYCSPLRLLAMEVFDKVNALGVYCS-----LLTGQEKK----LVPFSNHIA-CTV----EMVSTDEM----YDVAVIDEI 383 (808)
Q Consensus 322 lvl~Ptr~La~Qi~~~l~~~g~~~~-----l~~g~~~~----~~~~~~~i~-~t~----e~l~~~~l----v~~vVIDEA 383 (808)
+|++||||||.|+.+.+..+|.+.+ +++|...+ ......+++ .|| .|+..+.+ +.++|+|||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 9999999999999999999876543 34444433 233444444 454 33333332 899999999
Q ss_pred hhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEE--------------EEeeecchhhhhHHHHH
Q 003593 384 QMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE--------------QHYERFKPLVVEAKTLL 449 (808)
Q Consensus 384 h~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~--------------~~~~r~~~~~~~~~~ll 449 (808)
|.|++.+|+.+.-.+|..+|+..+.++.+++....+.........+.+. ++|........+.+.|+
T Consensus 179 DemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 179 DEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHH
Confidence 9999999999999999999988887777777665555444433332222 22211111111234566
Q ss_pred HHHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-c
Q 003593 450 GDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-I 527 (808)
Q Consensus 450 ~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V 527 (808)
.....+.-..+|||| +++++..+.+.++.. .+.|..+||+|++++|+++...|+. |+.+||++||+.+||||+| |
T Consensus 259 dLYd~LtItQavIFcnTk~kVdwLtekm~~~-nftVssmHGDm~qkERd~im~dFRs--g~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 259 DLYDTLTITQAVIFCNTKRKVDWLTEKMREA-NFTVSSMHGDMEQKERDKIMNDFRS--GKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHhhhhehheEEEEecccchhhHHHHHHHhh-CceeeeccCCcchhHHHHHHHHhhc--CCceEEEEechhhccCCccee
Confidence 655556666788888 578899999999875 8999999999999999999999975 9999999999999999998 9
Q ss_pred cEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 528 ~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
.+|||||+ |.+.+.|+||+||.||+|+ +|.++.|+..++-...+
T Consensus 336 slviNYDL---------P~nre~YIHRIGRSGRFGR---kGvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 336 SLVINYDL---------PNNRELYIHRIGRSGRFGR---KGVAINFVKSDDLRILR 379 (400)
T ss_pred EEEEecCC---------CccHHHHhhhhccccccCC---cceEEEEecHHHHHHHH
Confidence 99999999 9999999999999999999 99999999766544433
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=356.29 Aligned_cols=297 Identities=19% Similarity=0.213 Sum_probs=232.4
Q ss_pred HHHHHHHHCCCCCCcch--hhhHHHhCCCeEEEEecCCCcHHHHHHHHHH------------hcCcEEEEcccHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFM------------EAKKGIYCSPLRLLAMEV 334 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~--~~i~~~l~grdvlv~apTGSGKTl~~L~~L~------------~~~~~lvl~Ptr~La~Qi 334 (808)
.|+.++++..|..||++ +.++.++.|+||+.+|.||||||.+++.+++ +++.+|||+|||+||.|+
T Consensus 233 qLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi 312 (731)
T KOG0339|consen 233 QLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQI 312 (731)
T ss_pred HHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHH
Confidence 45677889999999997 4677789999999999999999999765543 245789999999999999
Q ss_pred HHHHHHcccccc-----cccccccccc-----ccCCeEEEeeec----ccC----CCceeEEEEccchhhhcccchhHHH
Q 003593 335 FDKVNALGVYCS-----LLTGQEKKLV-----PFSNHIACTVEM----VST----DEMYDVAVIDEIQMMSDACRGYAWT 396 (808)
Q Consensus 335 ~~~l~~~g~~~~-----l~~g~~~~~~-----~~~~~i~~t~e~----l~~----~~lv~~vVIDEAh~i~d~~~g~~~~ 396 (808)
+.+++++|...+ +++|.....+ ....+++|||.. +.. ...++++|||||++|.++||.++++
T Consensus 313 ~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVr 392 (731)
T KOG0339|consen 313 FSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVR 392 (731)
T ss_pred HHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHH
Confidence 999999865443 3444433222 234456777632 221 1228999999999999999999999
Q ss_pred HHHhhccccceeccCCchHHHHHHHHhhhcCCCcEE--------------EEeeecchhhhhHHHHHHHHhh-cCCCCEE
Q 003593 397 RALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE--------------QHYERFKPLVVEAKTLLGDLRN-VRSGDCV 461 (808)
Q Consensus 397 ~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~--------------~~~~r~~~~~~~~~~ll~~l~~-~~~g~~I 461 (808)
.|-..+.++++++++++++..-+..+++......+. |....+..-..+..+++..|.. ...|+.+
T Consensus 393 SI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvl 472 (731)
T KOG0339|consen 393 SIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVL 472 (731)
T ss_pred HHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEE
Confidence 999999999999999999887777777654332221 1111111111222356665533 4457788
Q ss_pred EEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCC
Q 003593 462 VAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN 539 (808)
Q Consensus 462 I~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~d 539 (808)
||.|+ ..+++++..|.-. +++|..+||+|.+.+|.+++..|+. +...||||||++++|+||| ++.||+||+
T Consensus 473 ifVTKk~~~e~i~a~Lklk-~~~v~llhgdkdqa~rn~~ls~fKk--k~~~VlvatDvaargldI~~ikTVvnyD~---- 545 (731)
T KOG0339|consen 473 IFVTKKADAEEIAANLKLK-GFNVSLLHGDKDQAERNEVLSKFKK--KRKPVLVATDVAARGLDIPSIKTVVNYDF---- 545 (731)
T ss_pred EEEeccCCHHHHHHHhccc-cceeeeecCchhhHHHHHHHHHHhh--cCCceEEEeeHhhcCCCccccceeecccc----
Confidence 88886 4677888888654 9999999999999999999999965 8899999999999999998 999999999
Q ss_pred CCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHH
Q 003593 540 GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 540 g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~ 580 (808)
-.+++.|.||+||+||+|. .|.+|+|+++.+..
T Consensus 546 -----ardIdththrigrtgRag~---kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 -----ARDIDTHTHRIGRTGRAGE---KGVAYTLVTEKDAE 578 (731)
T ss_pred -----cchhHHHHHHhhhcccccc---cceeeEEechhhHH
Confidence 7799999999999999999 89999999876554
No 28
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=365.31 Aligned_cols=298 Identities=18% Similarity=0.237 Sum_probs=228.8
Q ss_pred HHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-----------------cCcEEEEcccHHH
Q 003593 270 FRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-----------------AKKGIYCSPLRLL 330 (808)
Q Consensus 270 i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-----------------~~~~lvl~Ptr~L 330 (808)
+...++..||+.|||+| .++.+..|+|++++|+||||||.+||.+++. .+++||++|||||
T Consensus 85 l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL 164 (482)
T KOG0335|consen 85 LAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTREL 164 (482)
T ss_pred HhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHH
Confidence 34557789999999985 8888999999999999999999998887752 2578999999999
Q ss_pred HHHHHHHHHHcccc-----ccccccccccccccCCeEEEeeecccCCCc-------------eeEEEEccchhhhc-ccc
Q 003593 331 AMEVFDKVNALGVY-----CSLLTGQEKKLVPFSNHIACTVEMVSTDEM-------------YDVAVIDEIQMMSD-ACR 391 (808)
Q Consensus 331 a~Qi~~~l~~~g~~-----~~l~~g~~~~~~~~~~~i~~t~e~l~~~~l-------------v~~vVIDEAh~i~d-~~~ 391 (808)
|.|++++.+++... +..+.|...+.......-.|++.+.+++++ +.++||||||+|+| ++|
T Consensus 165 ~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF 244 (482)
T KOG0335|consen 165 VDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGF 244 (482)
T ss_pred hhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccc
Confidence 99999999997322 234444333322111112233444444443 78999999999999 999
Q ss_pred hhHHHHHHhhccc----cceeccCCchHHHHHHHHhhhcCCC-cEEEEeee--------------cchhhhhHHHHHHHH
Q 003593 392 GYAWTRALLGLMA----DEIHLCGDPSVLDVVRKICSETGDE-LHEQHYER--------------FKPLVVEAKTLLGDL 452 (808)
Q Consensus 392 g~~~~~~l~~l~~----~~i~l~~s~~~~~~i~~l~~~~~~~-~~~~~~~r--------------~~~~~~~~~~ll~~l 452 (808)
+++++.++..+.. .++++++++++...+..++.....+ .+.....+ +.. ......|++.|
T Consensus 245 ~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~-~~kr~~Lldll 323 (482)
T KOG0335|consen 245 EPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE-MEKRSKLLDLL 323 (482)
T ss_pred cccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc-hhhHHHHHHHh
Confidence 9999999977744 5788999999888777766554443 22222211 111 11224667776
Q ss_pred hhcC----CC-----CEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccc
Q 003593 453 RNVR----SG-----DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (808)
Q Consensus 453 ~~~~----~g-----~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~G 522 (808)
.... .+ .++||+ +.+.+..++..|... ++++..+||..++.+|.+.++.|+. |++.|||||++++||
T Consensus 324 ~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~-~~~~~sIhg~~tq~er~~al~~Fr~--g~~pvlVaT~VaaRG 400 (482)
T KOG0335|consen 324 NKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN-GYPAKSIHGDRTQIEREQALNDFRN--GKAPVLVATNVAARG 400 (482)
T ss_pred hcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC-CCCceeecchhhhhHHHHHHHHhhc--CCcceEEEehhhhcC
Confidence 5433 33 466666 568899999999875 9999999999999999999999965 999999999999999
Q ss_pred cccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 523 IDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
|||| |++||+||+ |.++.+|+|||||+||.|. .|.++.|+......+.+
T Consensus 401 lDi~~V~hVInyDm---------P~d~d~YvHRIGRTGR~Gn---~G~atsf~n~~~~~i~~ 450 (482)
T KOG0335|consen 401 LDIPNVKHVINYDM---------PADIDDYVHRIGRTGRVGN---GGRATSFFNEKNQNIAK 450 (482)
T ss_pred CCCCCCceeEEeec---------CcchhhHHHhccccccCCC---CceeEEEeccccchhHH
Confidence 9998 999999999 9999999999999999999 89999999854444433
No 29
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-40 Score=351.34 Aligned_cols=341 Identities=19% Similarity=0.207 Sum_probs=241.2
Q ss_pred CCCCcchhhhHHH-hCCCeEEEEecCCCcHHHH-HHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccccccccccccc--
Q 003593 279 LTKPHTWFPFARV-MKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK-- 354 (808)
Q Consensus 279 ~~~pt~~~~i~~~-l~grdvlv~apTGSGKTl~-~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~-- 354 (808)
|..|-+..++..+ -..+||.|+||||+|||+| +|++|+.++.+||++|+.+|..++.+.|..+-+++.-+++....
T Consensus 20 FKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~E 99 (641)
T KOG0352|consen 20 FKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVE 99 (641)
T ss_pred hcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHH
Confidence 4444444444444 4566999999999999999 89999999999999999999999999999998888765543221
Q ss_pred ----------ccccCCeEEEeeecccCCC------------ceeEEEEccchhhhcccchhHHHHHHhhccccc------
Q 003593 355 ----------LVPFSNHIACTVEMVSTDE------------MYDVAVIDEIQMMSDACRGYAWTRALLGLMADE------ 406 (808)
Q Consensus 355 ----------~~~~~~~i~~t~e~l~~~~------------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~------ 406 (808)
..+....++.|||++.... ++.++|+|||||+++ |||+|++.|+.|.+.+
T Consensus 100 R~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ--WGHDFRPDYL~LG~LRS~~~~v 177 (641)
T KOG0352|consen 100 RSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ--WGHDFRPDYLTLGSLRSVCPGV 177 (641)
T ss_pred HHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh--hccccCcchhhhhhHHhhCCCC
Confidence 1223456788998875532 289999999999998 9999999998876532
Q ss_pred --eec--cCCchHHHHHHHHhhhcCC-CcEEEEeeecch-hhhhHH--------HHHHH----Hh------hcC---CC-
Q 003593 407 --IHL--CGDPSVLDVVRKICSETGD-ELHEQHYERFKP-LVVEAK--------TLLGD----LR------NVR---SG- 458 (808)
Q Consensus 407 --i~l--~~s~~~~~~i~~l~~~~~~-~~~~~~~~r~~~-~~~~~~--------~ll~~----l~------~~~---~g- 458 (808)
+.| ++++.+.+.+-.-+....+ .++..--.|-+- ..+..+ .|.+. |- ... .|
T Consensus 178 pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GC 257 (641)
T KOG0352|consen 178 PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGC 257 (641)
T ss_pred ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcc
Confidence 233 4455555544332222111 111110001110 000011 11111 11 011 11
Q ss_pred CEEEEechhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc
Q 003593 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK 537 (808)
Q Consensus 459 ~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K 537 (808)
.+++|-||.+|++++-.|... |+++..||+||...+|..+++.|.+ +++.||+||..||||+|.| |++|||+++
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~-Gi~A~AYHAGLK~~ERTeVQe~WM~--~~~PvI~AT~SFGMGVDKp~VRFViHW~~-- 332 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIA-GIPAMAYHAGLKKKERTEVQEKWMN--NEIPVIAATVSFGMGVDKPDVRFVIHWSP-- 332 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhc-CcchHHHhcccccchhHHHHHHHhc--CCCCEEEEEeccccccCCcceeEEEecCc--
Confidence 133344889999999999876 9999999999999999999999965 9999999999999999998 999999999
Q ss_pred CCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHh-cCCch--------hhHHhCCCCcHHHHHHHH
Q 003593 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL-KQPFE--------VVKKVGLFPFFEQVELFA 608 (808)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l-~~~~~--------~~~~~~~~~~~~~~~~~~ 608 (808)
|.+++.|+|+.|||||+|. ..+|-++|+..+..-..+| ..... +.........++.|..||
T Consensus 333 -------~qn~AgYYQESGRAGRDGk---~SyCRLYYsR~D~~~i~FLi~~e~aklrek~~ke~~~k~~I~~F~k~~eFC 402 (641)
T KOG0352|consen 333 -------SQNLAGYYQESGRAGRDGK---RSYCRLYYSRQDKNALNFLVSGELAKLREKAKKEMQIKSIITGFAKMLEFC 402 (641)
T ss_pred -------hhhhHHHHHhccccccCCC---ccceeeeecccchHHHHHHHhhHHHHHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 8899999999999999999 8999999986655555544 22211 111122234567889999
Q ss_pred hhcccccHHHHHHHHHhhcc-cCCCcccCC
Q 003593 609 GQLSNYTFCQLLEKFGENCR-LDGSYFLCR 637 (808)
Q Consensus 609 ~~~~~~~~~~ll~~f~e~~~-~~~~~~~c~ 637 (808)
+. ..|++..+.+||++... ..+++..|.
T Consensus 403 E~-~~CRH~~ia~fFgD~~p~ckg~cd~c~ 431 (641)
T KOG0352|consen 403 ES-ARCRHVSIASFFDDTECPCKTNCDYCR 431 (641)
T ss_pred HH-cccchHHHHHhcCCCCCCCCCCccccC
Confidence 98 67999999999998653 223444444
No 30
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-40 Score=397.95 Aligned_cols=331 Identities=24% Similarity=0.281 Sum_probs=255.9
Q ss_pred CCcchhhhHHHhCCCeEEEEecCCCcHHHH-HHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccccccccccccccc---
Q 003593 281 KPHTWFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV--- 356 (808)
Q Consensus 281 ~pt~~~~i~~~l~grdvlv~apTGSGKTl~-~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~--- 356 (808)
+|-++.+|...+.|+|+++.+|||+||++| +|++++.+|.+|||+|+++||++|...+...++++..+++......
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~ 345 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLA 345 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHH
Confidence 345567777889999999999999999999 8999999999999999999999999999999999988887765421
Q ss_pred ---------ccCCeEEEeeecccCCC-------------ceeEEEEccchhhhcccchhHHHHHHhhcccc--------c
Q 003593 357 ---------PFSNHIACTVEMVSTDE-------------MYDVAVIDEIQMMSDACRGYAWTRALLGLMAD--------E 406 (808)
Q Consensus 357 ---------~~~~~i~~t~e~l~~~~-------------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~--------~ 406 (808)
..-.++++|||++.... ++.++|||||||+++ |||+||+.|..+..- -
T Consensus 346 i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSq--WgHdFRp~Yk~l~~l~~~~~~vP~ 423 (941)
T KOG0351|consen 346 ILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQ--WGHDFRPSYKRLGLLRIRFPGVPF 423 (941)
T ss_pred HHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhh--hcccccHHHHHHHHHHhhCCCCCe
Confidence 12345678887664321 278999999999997 999999998766432 2
Q ss_pred eeccCCc--hHHHHHHHHhhhcCCCcEEEEeeecchh-hhh----HH---HHHHHHhhcCCCC--EEEEechhHHHHHHH
Q 003593 407 IHLCGDP--SVLDVVRKICSETGDELHEQHYERFKPL-VVE----AK---TLLGDLRNVRSGD--CVVAFSRREIFEVKM 474 (808)
Q Consensus 407 i~l~~s~--~~~~~i~~l~~~~~~~~~~~~~~r~~~~-~~~----~~---~ll~~l~~~~~g~--~II~fsrk~~~~l~~ 474 (808)
+.+++++ .+...+-..+......++...|.|.+-. .+. .+ .++..+....+.. +|+|.+|++|+++..
T Consensus 424 iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~ 503 (941)
T KOG0351|consen 424 IALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSA 503 (941)
T ss_pred EEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHH
Confidence 2344444 4444444444555556666666665421 110 11 2333444444433 344447899999999
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHH
Q 003593 475 AIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQ 553 (808)
Q Consensus 475 ~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Q 553 (808)
.|.+. |+++..||+||++.+|..++..|. .++++|+|||-|||||||+| ||.||||++ |.|++.|+|
T Consensus 504 ~L~~~-~~~a~~YHAGl~~~~R~~Vq~~w~--~~~~~VivATVAFGMGIdK~DVR~ViH~~l---------Pks~E~YYQ 571 (941)
T KOG0351|consen 504 VLRSL-GKSAAFYHAGLPPKERETVQKAWM--SDKIRVIVATVAFGMGIDKPDVRFVIHYSL---------PKSFEGYYQ 571 (941)
T ss_pred HHHHh-chhhHhhhcCCCHHHHHHHHHHHh--cCCCeEEEEEeeccCCCCCCceeEEEECCC---------chhHHHHHH
Confidence 99986 899999999999999999999995 49999999999999999997 999999999 889999999
Q ss_pred HhCccCCCCCCCCceEEEEEecC-CHHHHHHHhcCCchh--hHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcc
Q 003593 554 IAGRAGRRGSIYPDGLTTTLNLD-DLDYLIECLKQPFEV--VKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCR 628 (808)
Q Consensus 554 r~GRAGR~G~~~~~G~~i~l~~~-d~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~ 628 (808)
.+|||||+|. ...|++||.. |...++.++...... ..+-.-...+.++..||++..+|++..++.|||+.+.
T Consensus 572 E~GRAGRDG~---~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~fge~f~ 646 (941)
T KOG0351|consen 572 EAGRAGRDGL---PSSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEYFGEEFD 646 (941)
T ss_pred hccccCcCCC---cceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHhcccccc
Confidence 9999999999 8999999974 555666666655111 1121224567889999999899999999999999854
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.5e-39 Score=370.35 Aligned_cols=297 Identities=18% Similarity=0.217 Sum_probs=221.5
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh--------------cCcEEEEcccHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME--------------AKKGIYCSPLRLLAM 332 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~--------------~~~~lvl~Ptr~La~ 332 (808)
.++++|.+.||..|+++| .++.+++|+|+|+++|||||||++|+.+++. .+++|||+||++||.
T Consensus 97 ~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~ 176 (475)
T PRK01297 97 ELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVV 176 (475)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHH
Confidence 556778899999999985 7888999999999999999999997766542 347899999999999
Q ss_pred HHHHHHHHcc----ccccccccccc-cc------cccCCeEEEeeecccCC--------CceeEEEEccchhhhcccchh
Q 003593 333 EVFDKVNALG----VYCSLLTGQEK-KL------VPFSNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGY 393 (808)
Q Consensus 333 Qi~~~l~~~g----~~~~l~~g~~~-~~------~~~~~~i~~t~e~l~~~--------~lv~~vVIDEAh~i~d~~~g~ 393 (808)
|+++.++.+. ..+..++|+.. .. .....++++|++++... ..+++|||||||++.+.+|..
T Consensus 177 Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~ 256 (475)
T PRK01297 177 QIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIP 256 (475)
T ss_pred HHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHH
Confidence 9999998774 33434444321 11 11245778888776321 127899999999999998888
Q ss_pred HHHHHHhhccc--cceeccCCchHHHHHHHHhhhcCC-Cc-------------EEEEeeecchhhhhHHHHHHHHhhcCC
Q 003593 394 AWTRALLGLMA--DEIHLCGDPSVLDVVRKICSETGD-EL-------------HEQHYERFKPLVVEAKTLLGDLRNVRS 457 (808)
Q Consensus 394 ~~~~~l~~l~~--~~i~l~~s~~~~~~i~~l~~~~~~-~~-------------~~~~~~r~~~~~~~~~~ll~~l~~~~~ 457 (808)
.++.++..++. ..+.++.++++...+..+...... .. +.+.+..... ......+...+.....
T Consensus 257 ~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~~~ 335 (475)
T PRK01297 257 QVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDKYKLLYNLVTQNPW 335 (475)
T ss_pred HHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhHHHHHHHHHHhcCC
Confidence 88888877754 345666666654433333332111 11 1111111111 1111233334444444
Q ss_pred CCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCC
Q 003593 458 GDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (808)
Q Consensus 458 g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~ 535 (808)
.++|||+ ++..++.++..|.+. |+.+..+||++++++|.++++.|++ |+++|||||+++++|||+| |++||++|+
T Consensus 336 ~~~IVF~~s~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLvaT~~l~~GIDi~~v~~VI~~~~ 412 (475)
T PRK01297 336 ERVMVFANRKDEVRRIEERLVKD-GINAAQLSGDVPQHKRIKTLEGFRE--GKIRVLVATDVAGRGIHIDGISHVINFTL 412 (475)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc-CCCEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEccccccCCcccCCCEEEEeCC
Confidence 5677777 567888888888764 8999999999999999999999965 9999999999999999998 999999999
Q ss_pred ccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHH
Q 003593 536 SKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (808)
Q Consensus 536 ~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l 581 (808)
|.|+.+|+||+|||||.|. .|.+++|+++++.++
T Consensus 413 ---------P~s~~~y~Qr~GRaGR~g~---~g~~i~~~~~~d~~~ 446 (475)
T PRK01297 413 ---------PEDPDDYVHRIGRTGRAGA---SGVSISFAGEDDAFQ 446 (475)
T ss_pred ---------CCCHHHHHHhhCccCCCCC---CceEEEEecHHHHHH
Confidence 9999999999999999999 899999998775544
No 32
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=346.10 Aligned_cols=298 Identities=19% Similarity=0.216 Sum_probs=220.1
Q ss_pred HCCCCCCcch--hhhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-------------cCcEEEEcccHHHHHHHHHHHHH
Q 003593 276 SADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFME-------------AKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 276 ~~g~~~pt~~--~~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-------------~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
.++++.||.+ ++||.++.|+|++|-++||||||++|+.++.. +..+|||+||||||.|+|+.+++
T Consensus 154 ~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qK 233 (708)
T KOG0348|consen 154 KMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQK 233 (708)
T ss_pred HhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHH
Confidence 7899999997 58999999999999999999999999888763 34689999999999999999999
Q ss_pred ccc------cccccccccccccc-----cCCeEEEeeecccC-----C----CceeEEEEccchhhhcccchhHHHHHHh
Q 003593 341 LGV------YCSLLTGQEKKLVP-----FSNHIACTVEMVST-----D----EMYDVAVIDEIQMMSDACRGYAWTRALL 400 (808)
Q Consensus 341 ~g~------~~~l~~g~~~~~~~-----~~~~i~~t~e~l~~-----~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~ 400 (808)
+.. ++.+++|+...... .-++++.||..+-. . ..+.++|+||||+++|+||+.+++.++.
T Consensus 234 Ll~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 234 LLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILK 313 (708)
T ss_pred HhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHH
Confidence 743 44555555443322 23344555432211 0 1178999999999999999999999886
Q ss_pred hc-------------cccceeccCCchHHHHHHHHhhhcCCCcEEEE---------------------------------
Q 003593 401 GL-------------MADEIHLCGDPSVLDVVRKICSETGDELHEQH--------------------------------- 434 (808)
Q Consensus 401 ~l-------------~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~~--------------------------------- 434 (808)
.+ +...++++.+++..+-+.+++.....+.+.-.
T Consensus 314 ~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iP 393 (708)
T KOG0348|consen 314 AVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIP 393 (708)
T ss_pred HHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCc
Confidence 65 22356777888887777777654333221111
Q ss_pred ------eeecchhhhhH----HHHHHHHhhcCCCCEEEEechhHHHHHHHHHHHh----------------------cCC
Q 003593 435 ------YERFKPLVVEA----KTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKH----------------------TNH 482 (808)
Q Consensus 435 ------~~r~~~~~~~~----~~ll~~l~~~~~g~~II~fsrk~~~~l~~~L~~~----------------------~g~ 482 (808)
|....| .... ..|..........+.|||||..+..++...+... .+.
T Consensus 394 eqL~qry~vVPp-KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~ 472 (708)
T KOG0348|consen 394 EQLLQRYTVVPP-KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDL 472 (708)
T ss_pred HHhhhceEecCC-chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcc
Confidence 111100 0000 1122223334455678999766655544433211 345
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCC
Q 003593 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561 (808)
Q Consensus 483 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~ 561 (808)
++.-+||+|+|++|..+++.|.. ....||.|||+++||||+| |++||+||+ |.+.++|+||+||++|.
T Consensus 473 k~~rLHGsm~QeeRts~f~~Fs~--~~~~VLLcTDVAaRGLDlP~V~~vVQYd~---------P~s~adylHRvGRTARa 541 (708)
T KOG0348|consen 473 KFYRLHGSMEQEERTSVFQEFSH--SRRAVLLCTDVAARGLDLPHVGLVVQYDP---------PFSTADYLHRVGRTARA 541 (708)
T ss_pred eEEEecCchhHHHHHHHHHhhcc--ccceEEEehhhhhccCCCCCcCeEEEeCC---------CCCHHHHHHHhhhhhhc
Confidence 78889999999999999999965 6777999999999999999 999999999 99999999999999999
Q ss_pred CCCCCceEEEEEecCCHHHHHHHhcCC
Q 003593 562 GSIYPDGLTTTLNLDDLDYLIECLKQP 588 (808)
Q Consensus 562 G~~~~~G~~i~l~~~d~~~l~~~l~~~ 588 (808)
|. .|.+++|..+.+..+...+...
T Consensus 542 G~---kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 542 GE---KGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred cC---CCceEEEecccHHHHHHHHHhh
Confidence 99 8999999988877777776543
No 33
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.7e-38 Score=355.94 Aligned_cols=313 Identities=16% Similarity=0.158 Sum_probs=228.9
Q ss_pred hhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-------cCcE
Q 003593 251 LFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-------AKKG 321 (808)
Q Consensus 251 ~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-------~~~~ 321 (808)
....|.++++.. .+.+++.+.||..|+++| +++.++.|+|++++||||||||++++.+++. ++++
T Consensus 26 ~~~~~~~l~l~~------~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~ 99 (401)
T PTZ00424 26 IVDSFDALKLNE------DLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQA 99 (401)
T ss_pred ccCCHhhCCCCH------HHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceE
Confidence 445666665433 456788899999999985 8888999999999999999999997665542 3478
Q ss_pred EEEcccHHHHHHHHHHHHHccccc----ccccccccc-----c-cccCCeEEEeeeccc--------CCCceeEEEEccc
Q 003593 322 IYCSPLRLLAMEVFDKVNALGVYC----SLLTGQEKK-----L-VPFSNHIACTVEMVS--------TDEMYDVAVIDEI 383 (808)
Q Consensus 322 lvl~Ptr~La~Qi~~~l~~~g~~~----~l~~g~~~~-----~-~~~~~~i~~t~e~l~--------~~~lv~~vVIDEA 383 (808)
||++||++|+.|+.+.+..++... ....|.... . .....++++|++.+. ....+++||||||
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 999999999999999998875432 222333211 0 112356778886542 1122899999999
Q ss_pred hhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCC--------------cEEEEeeecchhhhhHHHHH
Q 003593 384 QMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDE--------------LHEQHYERFKPLVVEAKTLL 449 (808)
Q Consensus 384 h~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~--------------~~~~~~~r~~~~~~~~~~ll 449 (808)
|++.+.+|+..+..++..++...+.++.+++....+..+....... .+.+.+............+.
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHH
Confidence 9999988888888888888776666666666544333222211110 01112211111111223344
Q ss_pred HHHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-c
Q 003593 450 GDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-I 527 (808)
Q Consensus 450 ~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V 527 (808)
..+......++|||+ ++..++.++..|... ++.+..+||+|++++|..+++.|++ |+++|||||+++++|||+| |
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~-~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHER-DFTVSCMHGDMDQKDRDLIMREFRS--GSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEcccccCCcCcccC
Confidence 444444555667776 578889999988765 8999999999999999999999965 9999999999999999998 9
Q ss_pred cEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHH
Q 003593 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (808)
Q Consensus 528 ~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~ 584 (808)
++||++|+ |.+..+|+||+|||||.|. .|.|++|+++++......
T Consensus 337 ~~VI~~~~---------p~s~~~y~qr~GRagR~g~---~G~~i~l~~~~~~~~~~~ 381 (401)
T PTZ00424 337 SLVINYDL---------PASPENYIHRIGRSGRFGR---KGVAINFVTPDDIEQLKE 381 (401)
T ss_pred CEEEEECC---------CCCHHHEeecccccccCCC---CceEEEEEcHHHHHHHHH
Confidence 99999999 9999999999999999998 899999998765554433
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-39 Score=329.74 Aligned_cols=301 Identities=16% Similarity=0.148 Sum_probs=229.2
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHhc-------CcEEEEcccHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFMEA-------KKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~~-------~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
.++..+..+||..|+|+| .||.++.|+|+++-|..|+|||.++..++++. -.++|++|||+||.|+.+.+.
T Consensus 95 ~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~ 174 (459)
T KOG0326|consen 95 ELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCK 174 (459)
T ss_pred HHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHH
Confidence 344556789999999985 66778999999999999999999977666642 268999999999999999888
Q ss_pred Hccccccc----cccccccccc-----cCCe-EEEeee-cccC---C----CceeEEEEccchhhhcccchhHHHHHHhh
Q 003593 340 ALGVYCSL----LTGQEKKLVP-----FSNH-IACTVE-MVST---D----EMYDVAVIDEIQMMSDACRGYAWTRALLG 401 (808)
Q Consensus 340 ~~g~~~~l----~~g~~~~~~~-----~~~~-i~~t~e-~l~~---~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~ 401 (808)
.++..+++ .+|...-... ...| ++.||. +++. + ..+.++|+||||.+++..|+..++.++..
T Consensus 175 ~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~ 254 (459)
T KOG0326|consen 175 ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISF 254 (459)
T ss_pred HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHh
Confidence 87655543 4444322111 1112 233331 1111 0 11789999999999999999999999999
Q ss_pred ccccceeccCCchHHHHHHHHhhhcCCC-------------cEEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEe-chh
Q 003593 402 LMADEIHLCGDPSVLDVVRKICSETGDE-------------LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SRR 467 (808)
Q Consensus 402 l~~~~i~l~~s~~~~~~i~~l~~~~~~~-------------~~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f-srk 467 (808)
||..++.++.++++.-.++.++.....+ -+.++|....+ ..+...|-..+.+++-..+|||| |.+
T Consensus 255 lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e-~qKvhCLntLfskLqINQsIIFCNS~~ 333 (459)
T KOG0326|consen 255 LPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEE-RQKVHCLNTLFSKLQINQSIIFCNSTN 333 (459)
T ss_pred CCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeech-hhhhhhHHHHHHHhcccceEEEeccch
Confidence 9999999999988777666665543322 12233321111 11111233344566667788888 678
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccC
Q 003593 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPV 546 (808)
Q Consensus 468 ~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~ 546 (808)
.++-++..+.+ .|+.|.++|+.|-++.|.+++..|++ |.++.|||||.+.||||++ |.+|||+|. |.
T Consensus 334 rVELLAkKITe-lGyscyyiHakM~Q~hRNrVFHdFr~--G~crnLVctDL~TRGIDiqavNvVINFDf---------pk 401 (459)
T KOG0326|consen 334 RVELLAKKITE-LGYSCYYIHAKMAQEHRNRVFHDFRN--GKCRNLVCTDLFTRGIDIQAVNVVINFDF---------PK 401 (459)
T ss_pred HhHHHHHHHHh-ccchhhHHHHHHHHhhhhhhhhhhhc--cccceeeehhhhhcccccceeeEEEecCC---------CC
Confidence 89999999987 59999999999999999999999976 9999999999999999997 999999999 88
Q ss_pred CHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHh
Q 003593 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (808)
Q Consensus 547 s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l 585 (808)
+.++|.||+||+||+|. .|.++.|++-++......+
T Consensus 402 ~aEtYLHRIGRsGRFGh---lGlAInLityedrf~L~~I 437 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGH---LGLAINLITYEDRFNLYRI 437 (459)
T ss_pred CHHHHHHHccCCccCCC---cceEEEEEehhhhhhHHHH
Confidence 99999999999999999 8999999986655544443
No 35
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-38 Score=366.11 Aligned_cols=319 Identities=18% Similarity=0.217 Sum_probs=249.6
Q ss_pred hhcCCCCCCChhhhHHHHhhhcCChhHHHHHHHcCCCchhhhhhhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcch--
Q 003593 208 VYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTW-- 285 (808)
Q Consensus 208 ~~i~~~~~p~~~~~f~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~-- 285 (808)
+.+.|..+|+|+.+|.+. ++...+ +..++++||.+|++|
T Consensus 353 i~v~g~~~pkpv~sW~q~---gl~~~i------------------------------------l~tlkkl~y~k~~~IQ~ 393 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQC---GLSSKI------------------------------------LETLKKLGYEKPTPIQA 393 (997)
T ss_pred eeeccCCCCcccchHhhC---CchHHH------------------------------------HHHHHHhcCCCCcchhh
Confidence 778899999999999998 555433 344568999999998
Q ss_pred hhhHHHhCCCeEEEEecCCCcHHHHHHHHHH------------hcCcEEEEcccHHHHHHHHHHHHHcccc----ccccc
Q 003593 286 FPFARVMKRKIIYHCGPTNSGKTYNALQRFM------------EAKKGIYCSPLRLLAMEVFDKVNALGVY----CSLLT 349 (808)
Q Consensus 286 ~~i~~~l~grdvlv~apTGSGKTl~~L~~L~------------~~~~~lvl~Ptr~La~Qi~~~l~~~g~~----~~l~~ 349 (808)
|+||.+|.|+|||++|.||||||++|+.+++ +++.+||++|||+|+.||.+.++.+... +..+.
T Consensus 394 qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vy 473 (997)
T KOG0334|consen 394 QAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVY 473 (997)
T ss_pred hhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEec
Confidence 5999999999999999999999999876665 2567899999999999999999987443 33333
Q ss_pred cc-ccccc-----ccCCeEEEeee----cc--cCCCc-----eeEEEEccchhhhcccchhHHHHHHhhccccceeccCC
Q 003593 350 GQ-EKKLV-----PFSNHIACTVE----MV--STDEM-----YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGD 412 (808)
Q Consensus 350 g~-~~~~~-----~~~~~i~~t~e----~l--~~~~l-----v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s 412 (808)
|. ....+ ....+++||+. ++ +.+++ +.++|+||||+|.|++|.+..+.++..+++.+++.+++
T Consensus 474 gg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfS 553 (997)
T KOG0334|consen 474 GGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFS 553 (997)
T ss_pred CCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhh
Confidence 33 22111 23566778762 21 22222 77999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhcCCCcEEEEe-------------eecch-hhhhHHHHHHHHh-hcCCCCEEEEec-hhHHHHHHHHH
Q 003593 413 PSVLDVVRKICSETGDELHEQHY-------------ERFKP-LVVEAKTLLGDLR-NVRSGDCVVAFS-RREIFEVKMAI 476 (808)
Q Consensus 413 ~~~~~~i~~l~~~~~~~~~~~~~-------------~r~~~-~~~~~~~ll~~l~-~~~~g~~II~fs-rk~~~~l~~~L 476 (808)
++....+..++.......+...+ .+..+ .......|++.|. ....+++|||++ ..+|..+...|
T Consensus 554 atfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 554 ATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred hhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHH
Confidence 98877766666544332211100 11222 1122234555552 234778888886 47899999999
Q ss_pred HHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHh
Q 003593 477 EKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555 (808)
Q Consensus 477 ~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~ 555 (808)
.+ .|+.|..+||+.++.+|..+++.|+ ++.+.+||||+++++|||+. +.+|||||+ |...+.|+||+
T Consensus 634 ~~-ag~~~~slHGgv~q~dR~sti~dfK--~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~---------pnh~edyvhR~ 701 (997)
T KOG0334|consen 634 QK-AGYNCDSLHGGVDQHDRSSTIEDFK--NGVVNLLVATSVVARGLDVKELILVVNYDF---------PNHYEDYVHRV 701 (997)
T ss_pred Hh-cCcchhhhcCCCchHHHHhHHHHHh--ccCceEEEehhhhhcccccccceEEEEccc---------chhHHHHHHHh
Confidence 86 5999999999999999999999995 59999999999999999996 999999999 99999999999
Q ss_pred CccCCCCCCCCceEEEEEecCCHHH
Q 003593 556 GRAGRRGSIYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 556 GRAGR~G~~~~~G~~i~l~~~d~~~ 580 (808)
|||||+|+ +|.|++|.+++...
T Consensus 702 gRTgragr---kg~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 702 GRTGRAGR---KGAAVTFITPDQLK 723 (997)
T ss_pred cccccCCc---cceeEEEeChHHhh
Confidence 99999999 99999999885443
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.4e-37 Score=367.07 Aligned_cols=293 Identities=21% Similarity=0.261 Sum_probs=213.7
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----h--cCcEEEEcccHHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----E--AKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~--~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
.+.++|++.||+.|+++| +++.+++|+|+++++|||||||+||+.+++ . +.++|||+|||+||.|+++.+++
T Consensus 24 ~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~ 103 (742)
T TIGR03817 24 DVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRE 103 (742)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHH
Confidence 566888999999999985 788889999999999999999999766554 2 34789999999999999999998
Q ss_pred cc---cccccccccccccc-----ccCCeEEEeeecccCC------------CceeEEEEccchhhhcccchhHHHHHHh
Q 003593 341 LG---VYCSLLTGQEKKLV-----PFSNHIACTVEMVSTD------------EMYDVAVIDEIQMMSDACRGYAWTRALL 400 (808)
Q Consensus 341 ~g---~~~~l~~g~~~~~~-----~~~~~i~~t~e~l~~~------------~lv~~vVIDEAh~i~d~~~g~~~~~~l~ 400 (808)
++ +.+..++|+..... ....++++||+++... ..+++|||||||++.+. ||..+..++.
T Consensus 104 l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-fg~~~~~il~ 182 (742)
T TIGR03817 104 LTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-FGSHVALVLR 182 (742)
T ss_pred hccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-cHHHHHHHHH
Confidence 74 45556667654321 2345677888876421 12899999999999874 8877665554
Q ss_pred hc-------cccceeccCCchHHHHHHHHhhhcCCCcEE----------EEeeecchh----------------hhhHHH
Q 003593 401 GL-------MADEIHLCGDPSVLDVVRKICSETGDELHE----------QHYERFKPL----------------VVEAKT 447 (808)
Q Consensus 401 ~l-------~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~----------~~~~r~~~~----------------~~~~~~ 447 (808)
.+ +...+.++.++|+.+..+......+..... ..+....+. ..+...
T Consensus 183 rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~ 262 (742)
T TIGR03817 183 RLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAAD 262 (742)
T ss_pred HHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHH
Confidence 33 344566666666533322111111211110 001111111 111223
Q ss_pred HHHHHhhcCCCCEEEEe-chhHHHHHHHHHHHh-------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCC
Q 003593 448 LLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKH-------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519 (808)
Q Consensus 448 ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~-------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~ 519 (808)
++..+... ....|||+ |++.++.++..+.+. .+.++..|||++++++|.+++++|++ |+++||||||++
T Consensus 263 ~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~--G~i~vLVaTd~l 339 (742)
T TIGR03817 263 LLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD--GELLGVATTNAL 339 (742)
T ss_pred HHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc--CCceEEEECchH
Confidence 33333332 35567766 678999998887653 25688999999999999999999965 999999999999
Q ss_pred ccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 520 GMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 520 ~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
++||||| |++||++|+ |.+.++|+||+|||||.|. .|.++++..++
T Consensus 340 erGIDI~~vd~VI~~~~---------P~s~~~y~qRiGRaGR~G~---~g~ai~v~~~~ 386 (742)
T TIGR03817 340 ELGVDISGLDAVVIAGF---------PGTRASLWQQAGRAGRRGQ---GALVVLVARDD 386 (742)
T ss_pred hccCCcccccEEEEeCC---------CCCHHHHHHhccccCCCCC---CcEEEEEeCCC
Confidence 9999997 999999999 9999999999999999999 89999998643
No 37
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=324.99 Aligned_cols=328 Identities=20% Similarity=0.237 Sum_probs=248.1
Q ss_pred CCCcchhhhHHHhCCCeEEEEecCCCcHHHH-HHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccccccccccccccc--
Q 003593 280 TKPHTWFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV-- 356 (808)
Q Consensus 280 ~~pt~~~~i~~~l~grdvlv~apTGSGKTl~-~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~-- 356 (808)
-+|-+..+|...|.|+++++++|||.||++| +|++|...|-+||++|+++|+.++.-.++.+|+....++.......
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k 174 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAK 174 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHH
Confidence 3555556777889999999999999999999 8999999999999999999999999999999999887766543321
Q ss_pred ----------ccCCeEEEeeecccCCC-------------ceeEEEEccchhhhcccchhHHHHHHhhccc--------c
Q 003593 357 ----------PFSNHIACTVEMVSTDE-------------MYDVAVIDEIQMMSDACRGYAWTRALLGLMA--------D 405 (808)
Q Consensus 357 ----------~~~~~i~~t~e~l~~~~-------------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~--------~ 405 (808)
..-..+++||+.+...+ .+.++.|||+||.++ ||++|++.|..|.- .
T Consensus 175 ~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsq--wghdfr~dy~~l~ilkrqf~~~~ 252 (695)
T KOG0353|consen 175 RVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQ--WGHDFRPDYKALGILKRQFKGAP 252 (695)
T ss_pred HHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhh--hCcccCcchHHHHHHHHhCCCCc
Confidence 12245778887654322 289999999999997 99999977754421 1
Q ss_pred ceeccC--CchHHHHHHHHhhhcCCCcEEEEeeecc--------hhhhh--HHHHHHHHhhcC--CCCEEEEechhHHHH
Q 003593 406 EIHLCG--DPSVLDVVRKICSETGDELHEQHYERFK--------PLVVE--AKTLLGDLRNVR--SGDCVVAFSRREIFE 471 (808)
Q Consensus 406 ~i~l~~--s~~~~~~i~~l~~~~~~~~~~~~~~r~~--------~~~~~--~~~ll~~l~~~~--~g~~II~fsrk~~~~ 471 (808)
.+-+++ +..+.+.++.++-....-.+...|.|.+ |-..+ ...+...+...- ...+|+||++++|+.
T Consensus 253 iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ek 332 (695)
T KOG0353|consen 253 IIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEK 332 (695)
T ss_pred eeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHH
Confidence 223333 3345666555543333223333343332 11111 123333443322 234788999999999
Q ss_pred HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhH
Q 003593 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQ 550 (808)
Q Consensus 472 l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~ 550 (808)
++..|... |+.+..||+.|.|++|.-+.+.|.. |+++|+|||-++|||||.| ||+|||..+ |.|++.
T Consensus 333 va~alkn~-gi~a~~yha~lep~dks~~hq~w~a--~eiqvivatvafgmgidkpdvrfvihhsl---------~ksien 400 (695)
T KOG0353|consen 333 VAKALKNH-GIHAGAYHANLEPEDKSGAHQGWIA--GEIQVIVATVAFGMGIDKPDVRFVIHHSL---------PKSIEN 400 (695)
T ss_pred HHHHHHhc-CccccccccccCccccccccccccc--cceEEEEEEeeecccCCCCCeeEEEeccc---------chhHHH
Confidence 99999875 9999999999999999999999965 9999999999999999998 999999999 889999
Q ss_pred HHH-------------------------------------------HhCccCCCCCCCCceEEEEEec-CCHHHHHHHhc
Q 003593 551 VKQ-------------------------------------------IAGRAGRRGSIYPDGLTTTLNL-DDLDYLIECLK 586 (808)
Q Consensus 551 y~Q-------------------------------------------r~GRAGR~G~~~~~G~~i~l~~-~d~~~l~~~l~ 586 (808)
|+| ..|||||++. +..|+++|. .|...+-.++.
T Consensus 401 yyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~---~a~cilyy~~~difk~ssmv~ 477 (695)
T KOG0353|consen 401 YYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM---KADCILYYGFADIFKISSMVQ 477 (695)
T ss_pred HHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC---cccEEEEechHHHHhHHHHHH
Confidence 999 8999999999 899999995 34444444443
Q ss_pred CCchhhHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccC
Q 003593 587 QPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLD 630 (808)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~ 630 (808)
.....+ ..+-.|..||.....|++..+.++|.|.....
T Consensus 478 ~e~~g~------q~ly~mv~y~~d~s~crrv~laehfde~w~~~ 515 (695)
T KOG0353|consen 478 MENTGI------QKLYEMVRYAADISKCRRVKLAEHFDEAWEPE 515 (695)
T ss_pred HHhhhH------HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHH
Confidence 333333 34567999999999999999999999876543
No 38
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-37 Score=325.90 Aligned_cols=308 Identities=18% Similarity=0.254 Sum_probs=240.4
Q ss_pred hhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-------------
Q 003593 253 PIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME------------- 317 (808)
Q Consensus 253 p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~------------- 317 (808)
..|++|++.. +|++++.+.||..||.+| +||.+|.|+|+++-|.||||||++|+.++++
T Consensus 19 ktFe~~gLD~------RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~ 92 (569)
T KOG0346|consen 19 KTFEEFGLDS------RLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQ 92 (569)
T ss_pred ccHHHhCCCH------HHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccc
Confidence 5788888776 899999999999999986 7888899999999999999999998888763
Q ss_pred cCcEEEEcccHHHHHHHHHHHHHccccccc------ccccccc-----c-cccCCeEEEeee----cccCC-----Ccee
Q 003593 318 AKKGIYCSPLRLLAMEVFDKVNALGVYCSL------LTGQEKK-----L-VPFSNHIACTVE----MVSTD-----EMYD 376 (808)
Q Consensus 318 ~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l------~~g~~~~-----~-~~~~~~i~~t~e----~l~~~-----~lv~ 376 (808)
++.++|++||||||+|++..+.++...|.. ++..... . .....+++.||. ++..+ ..++
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~ 172 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLS 172 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhhee
Confidence 347899999999999999999887544431 1111111 1 123445666652 22222 2289
Q ss_pred EEEEccchhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEE---------------EEeeecchh
Q 003593 377 VAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE---------------QHYERFKPL 441 (808)
Q Consensus 377 ~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~---------------~~~~r~~~~ 441 (808)
++|+||||.++.-|+..++..+...||...+.++.+++..+.+..+-.......++ |++....
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-- 250 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-- 250 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec--
Confidence 99999999999999999999999999999999999999888877665543322221 2221111
Q ss_pred hhhHHHHHHHH--hhcCCCCEEEEec-hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCC
Q 003593 442 VVEAKTLLGDL--RNVRSGDCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA 518 (808)
Q Consensus 442 ~~~~~~ll~~l--~~~~~g~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda 518 (808)
..+.-.++..+ .+.-.|+++||.+ -..|..+...|++. |++.+++.|.||..-|..++++|+. |-++||||||.
T Consensus 251 e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF-GiksciLNseLP~NSR~Hii~QFNk--G~YdivIAtD~ 327 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF-GIKSCILNSELPANSRCHIIEQFNK--GLYDIVIATDD 327 (569)
T ss_pred cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh-CcHhhhhcccccccchhhHHHHhhC--cceeEEEEccC
Confidence 11111222233 3455788888884 58899999999874 9999999999999999999999987 99999999992
Q ss_pred -----------------------------------CccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCC
Q 003593 519 -----------------------------------VGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562 (808)
Q Consensus 519 -----------------------------------~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G 562 (808)
.+||||+- |..|||||+ |.+..+|+||+|||+|++
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~---------P~t~~sYIHRvGRTaRg~ 398 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF---------PETVTSYIHRVGRTARGN 398 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC---------CCchHHHHHhccccccCC
Confidence 57999995 999999999 999999999999999999
Q ss_pred CCCCceEEEEEecCCHHHHHH
Q 003593 563 SIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 563 ~~~~~G~~i~l~~~d~~~l~~ 583 (808)
. +|.+++|+.+....-..
T Consensus 399 n---~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 399 N---KGTALSFVSPKEEFGKE 416 (569)
T ss_pred C---CCceEEEecchHHhhhh
Confidence 9 99999999887665333
No 39
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=310.16 Aligned_cols=309 Identities=18% Similarity=0.220 Sum_probs=232.4
Q ss_pred hhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHh--CCCeEEEEecCCCcHHHHHHHHHHh-------cCcE
Q 003593 253 PIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVM--KRKIIYHCGPTNSGKTYNALQRFME-------AKKG 321 (808)
Q Consensus 253 p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l--~grdvlv~apTGSGKTl~~L~~L~~-------~~~~ 321 (808)
..|+++.+.. .+++.|..++|.+|+.+| ++|.+| -.+++|..+..|+|||.||...++. .+.+
T Consensus 90 ksFeeL~LkP------ellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~ 163 (477)
T KOG0332|consen 90 KSFEELRLKP------ELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC 163 (477)
T ss_pred ccHHhhCCCH------HHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc
Confidence 4566555544 566788899999999986 334444 4689999999999999997776653 4688
Q ss_pred EEEcccHHHHHHHHHHHHHccccccccccccc------ccccc-CCeEEEeeeccc---------CCCceeEEEEccchh
Q 003593 322 IYCSPLRLLAMEVFDKVNALGVYCSLLTGQEK------KLVPF-SNHIACTVEMVS---------TDEMYDVAVIDEIQM 385 (808)
Q Consensus 322 lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~------~~~~~-~~~i~~t~e~l~---------~~~lv~~vVIDEAh~ 385 (808)
+.|+|||+||.|+.+.+.+.|..+.+...... ++... ..+++.|+..+. ....+.++|+||||.
T Consensus 164 iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~ 243 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV 243 (477)
T ss_pred eeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhh
Confidence 99999999999999999999987744332222 22222 233444542211 112288999999998
Q ss_pred hhcc-cchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEE--------------EEeeecchhhhhHHHHHH
Q 003593 386 MSDA-CRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE--------------QHYERFKPLVVEAKTLLG 450 (808)
Q Consensus 386 i~d~-~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~--------------~~~~r~~~~~~~~~~ll~ 450 (808)
|.+. ||+.+-.+++..++...+.++++++..+-+..++.....+-.. +.|.....-..+...|..
T Consensus 244 Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ 323 (477)
T KOG0332|consen 244 MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN 323 (477)
T ss_pred hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH
Confidence 8764 6888888999999988888899998887777766554332111 122111111111223444
Q ss_pred HHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-cc
Q 003593 451 DLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IR 528 (808)
Q Consensus 451 ~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~ 528 (808)
...-..-|..|||| +++.+..++..+.+. |+.|..+||.|.-++|..+++.|+. |..+|||+|++++||||++ |.
T Consensus 324 lyg~~tigqsiIFc~tk~ta~~l~~~m~~~-Gh~V~~l~G~l~~~~R~~ii~~Fr~--g~~kVLitTnV~ARGiDv~qVs 400 (477)
T KOG0332|consen 324 LYGLLTIGQSIIFCHTKATAMWLYEEMRAE-GHQVSLLHGDLTVEQRAAIIDRFRE--GKEKVLITTNVCARGIDVAQVS 400 (477)
T ss_pred HHhhhhhhheEEEEeehhhHHHHHHHHHhc-CceeEEeeccchhHHHHHHHHHHhc--CcceEEEEechhhcccccceEE
Confidence 33344557778888 788999999999886 9999999999999999999999976 9999999999999999998 99
Q ss_pred EEEEeCCc-cCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 529 RVVFYSLS-KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 529 ~VI~~~~~-K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
.|||||++ ||+|. .+.+.|+||+|||||+|+ .|.++.|+.+.
T Consensus 401 ~VvNydlP~~~~~~----pD~etYlHRiGRtGRFGk---kG~a~n~v~~~ 443 (477)
T KOG0332|consen 401 VVVNYDLPVKYTGE----PDYETYLHRIGRTGRFGK---KGLAINLVDDK 443 (477)
T ss_pred EEEecCCccccCCC----CCHHHHHHHhcccccccc---cceEEEeeccc
Confidence 99999986 67776 489999999999999999 99999998643
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.9e-35 Score=351.78 Aligned_cols=319 Identities=24% Similarity=0.301 Sum_probs=221.6
Q ss_pred HHHHHHHHCCCCCCcchh--hhHH-HhCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHc
Q 003593 269 RFRAMIESADLTKPHTWF--PFAR-VMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~-~l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
.++++++..||..|+|+| ++.. ++.|++++++||||||||+++..+++ .++++|||+||++||.|+++.++.+
T Consensus 11 ~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~ 90 (737)
T PRK02362 11 GVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERF 90 (737)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHh
Confidence 345778899999999986 4554 67999999999999999999655543 4679999999999999999999887
Q ss_pred ---ccccccccccccccc---ccCCeEEEeeecccC------C--CceeEEEEccchhhhcccchhHHHHHHhhcc---c
Q 003593 342 ---GVYCSLLTGQEKKLV---PFSNHIACTVEMVST------D--EMYDVAVIDEIQMMSDACRGYAWTRALLGLM---A 404 (808)
Q Consensus 342 ---g~~~~l~~g~~~~~~---~~~~~i~~t~e~l~~------~--~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~---~ 404 (808)
|+.+..++|+..... ....++++|++.+.. . ..++++||||||++.+.++|..++.++..+. .
T Consensus 91 ~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 91 EELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred hcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 777888888654322 235678889875421 1 1289999999999999999999987765543 3
Q ss_pred cceeccCCchHHHHHHHHhhhcCCC----------cEEEEe--ee------cchhhh-hHHHHHHHHhh--cCCCCEEEE
Q 003593 405 DEIHLCGDPSVLDVVRKICSETGDE----------LHEQHY--ER------FKPLVV-EAKTLLGDLRN--VRSGDCVVA 463 (808)
Q Consensus 405 ~~i~l~~s~~~~~~i~~l~~~~~~~----------~~~~~~--~r------~~~~~~-~~~~ll~~l~~--~~~g~~II~ 463 (808)
..+.+..+++... ...++.+.+.. +....+ .. ...+.. .....+..+.. ...+++|||
T Consensus 171 ~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF 249 (737)
T PRK02362 171 DLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVF 249 (737)
T ss_pred CCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEE
Confidence 3333444444321 12222222211 111110 00 000000 00111222211 134567777
Q ss_pred e-chhHHHHHHHHHHHhc-----------------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 003593 464 F-SRREIFEVKMAIEKHT-----------------------------------NHHCCVIYGALPPETRRQQANLFNDQD 507 (808)
Q Consensus 464 f-srk~~~~l~~~L~~~~-----------------------------------g~~v~~lhg~l~~~~R~~~~~~F~~~~ 507 (808)
+ +++.|..++..|.+.. ...++++||+|++++|..+++.|++
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~-- 327 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD-- 327 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc--
Confidence 7 5788887777765421 1478999999999999999999975
Q ss_pred CCeeEEEECCCCccccccCccEEEEeCCccCCCC-ccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCH---HHHHH
Q 003593 508 NEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD-KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL---DYLIE 583 (808)
Q Consensus 508 g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~-~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~---~~l~~ 583 (808)
|.++|||||+++++|||+|...||..+..+||+. +..|.+..+|+||+|||||.|. .+.|.|+.+..... ..+.+
T Consensus 328 G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~-d~~G~~ii~~~~~~~~~~~~~~ 406 (737)
T PRK02362 328 RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGL-DPYGEAVLLAKSYDELDELFER 406 (737)
T ss_pred CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCC-CCCceEEEEecCchhHHHHHHH
Confidence 9999999999999999999666766677778765 4679999999999999999997 34699999996542 23455
Q ss_pred HhcCCchh
Q 003593 584 CLKQPFEV 591 (808)
Q Consensus 584 ~l~~~~~~ 591 (808)
++....++
T Consensus 407 ~l~~~~~~ 414 (737)
T PRK02362 407 YIWADPED 414 (737)
T ss_pred HHhCCCCc
Confidence 66544333
No 41
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-36 Score=324.31 Aligned_cols=292 Identities=17% Similarity=0.214 Sum_probs=208.4
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCC-CeEEEEecCCCcHHHHHHHHHHh------------------cCc--EEEEc
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKR-KIIYHCGPTNSGKTYNALQRFME------------------AKK--GIYCS 325 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~g-rdvlv~apTGSGKTl~~L~~L~~------------------~~~--~lvl~ 325 (808)
.++.+|..+||..||+|| .+|.++.| .|+++.|.||||||++|-.+++. .++ +||++
T Consensus 191 ~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~t 270 (731)
T KOG0347|consen 191 EILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVT 270 (731)
T ss_pred HHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEec
Confidence 567889999999999996 56777888 79999999999999996444443 123 89999
Q ss_pred ccHHHHHHHHHHHHHc----cccccccccccc-cc----cc-cCCeEEEeee----cccCC-------CceeEEEEccch
Q 003593 326 PLRLLAMEVFDKVNAL----GVYCSLLTGQEK-KL----VP-FSNHIACTVE----MVSTD-------EMYDVAVIDEIQ 384 (808)
Q Consensus 326 Ptr~La~Qi~~~l~~~----g~~~~l~~g~~~-~~----~~-~~~~i~~t~e----~l~~~-------~lv~~vVIDEAh 384 (808)
||||||.|+.+.+... ++.+..++|+.. .. .. ...++++||. ++... +.+.++||||||
T Consensus 271 PTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD 350 (731)
T KOG0347|consen 271 PTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD 350 (731)
T ss_pred ChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH
Confidence 9999999999999887 444444455422 11 11 2334555652 22111 128999999999
Q ss_pred hhhcccchhHHHHHHhhcc-----ccceeccCCchHHH---------------------HHHHHhhhcC---CCcEEEEe
Q 003593 385 MMSDACRGYAWTRALLGLM-----ADEIHLCGDPSVLD---------------------VVRKICSETG---DELHEQHY 435 (808)
Q Consensus 385 ~i~d~~~g~~~~~~l~~l~-----~~~i~l~~s~~~~~---------------------~i~~l~~~~~---~~~~~~~~ 435 (808)
+|.+.|.-..++.++..|. ..++++.++++..- .++.++...+ ...++.
T Consensus 351 RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD-- 428 (731)
T KOG0347|consen 351 RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIID-- 428 (731)
T ss_pred HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEe--
Confidence 9999887777888886665 24567766665311 1222222221 111111
Q ss_pred eecchhhhhHHHHH---------------HHHhhcCCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Q 003593 436 ERFKPLVVEAKTLL---------------GDLRNVRSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQ 499 (808)
Q Consensus 436 ~r~~~~~~~~~~ll---------------~~l~~~~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~ 499 (808)
.++.......+. .++....+|..+||++. ..+..++-.|. ..++...++|+.|.|..|.+.
T Consensus 429 --~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~-~L~i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 429 --LTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLN-NLDIPPLPLHASMIQKQRLKN 505 (731)
T ss_pred --cCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHh-hcCCCCchhhHHHHHHHHHHh
Confidence 111111111111 12223467888888865 44555665554 469999999999999999999
Q ss_pred HHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCH
Q 003593 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578 (808)
Q Consensus 500 ~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~ 578 (808)
+++|+. ....||||||+++|||||| |.+||||.. |.+.+-|+||.||++|++. .|..+.|+.+.+
T Consensus 506 LEkF~~--~~~~VLiaTDVAARGLDIp~V~HVIHYqV---------PrtseiYVHRSGRTARA~~---~Gvsvml~~P~e 571 (731)
T KOG0347|consen 506 LEKFKQ--SPSGVLIATDVAARGLDIPGVQHVIHYQV---------PRTSEIYVHRSGRTARANS---EGVSVMLCGPQE 571 (731)
T ss_pred HHHHhc--CCCeEEEeehhhhccCCCCCcceEEEeec---------CCccceeEecccccccccC---CCeEEEEeChHH
Confidence 999965 8889999999999999998 999999999 9999999999999999999 899999997654
Q ss_pred H
Q 003593 579 D 579 (808)
Q Consensus 579 ~ 579 (808)
.
T Consensus 572 ~ 572 (731)
T KOG0347|consen 572 V 572 (731)
T ss_pred h
Confidence 3
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-34 Score=314.25 Aligned_cols=331 Identities=15% Similarity=0.186 Sum_probs=239.7
Q ss_pred HhHHHHhhcCCCCCCChhhhHHHHhhhcCChhHHHHHHHcCCCchhhhhhhhhhHhhhcccCchHHHHHHHHHHHCCCCC
Q 003593 202 ANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPIFVEFCIEEFPDEIKRFRAMIESADLTK 281 (808)
Q Consensus 202 ~~~~~~~~i~~~~~p~~~~~f~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~ 281 (808)
.++...+.+.|.+.|.++-+|..... +... ..++++.+...+|..
T Consensus 114 ~Rk~~k~~v~G~~~~~~l~~f~~lt~--------~~~~---------------------------~~~ll~nl~~~~F~~ 158 (593)
T KOG0344|consen 114 IRKSNKINVDGFHLPPPLLSFSDLTY--------DYSM---------------------------NKRLLENLQELGFDE 158 (593)
T ss_pred chhcceeeccCCCCCCccccccccch--------hhhh---------------------------cHHHHHhHhhCCCCC
Confidence 34445667788888999988877511 0000 013345677899999
Q ss_pred Ccch--hhhHHHhCCCeEEEEecCCCcHHHHHHHHHHh------------cCcEEEEcccHHHHHHHHHHHHHccccc--
Q 003593 282 PHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFME------------AKKGIYCSPLRLLAMEVFDKVNALGVYC-- 345 (808)
Q Consensus 282 pt~~--~~i~~~l~grdvlv~apTGSGKTl~~L~~L~~------------~~~~lvl~Ptr~La~Qi~~~l~~~g~~~-- 345 (808)
|+++ ++++..+.++++++|||||||||++++.+++. +-+++|++|||+||.|++.++.++.+.-
T Consensus 159 Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t 238 (593)
T KOG0344|consen 159 PTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT 238 (593)
T ss_pred CCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC
Confidence 9997 48888899999999999999999997766652 1267999999999999999999986431
Q ss_pred c----ccccccccccc-------cCCeEEEeee----cccCC------CceeEEEEccchhhhcc-cchhHHHHHHhhcc
Q 003593 346 S----LLTGQEKKLVP-------FSNHIACTVE----MVSTD------EMYDVAVIDEIQMMSDA-CRGYAWTRALLGLM 403 (808)
Q Consensus 346 ~----l~~g~~~~~~~-------~~~~i~~t~e----~l~~~------~lv~~vVIDEAh~i~d~-~~g~~~~~~l~~l~ 403 (808)
+ .+......... ....++.||. .+..+ ..+.++|+||||++.+. .|-.++-.+|..+.
T Consensus 239 ~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 239 SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhc
Confidence 1 11111111111 1222344442 11221 12889999999999998 78888888998887
Q ss_pred ccceec-cCCchHHHHHHHHhhhcCCCcEEEEeeecchh--hhh------------HHHHHHHHhhcCCCCEEEEe-chh
Q 003593 404 ADEIHL-CGDPSVLDVVRKICSETGDELHEQHYERFKPL--VVE------------AKTLLGDLRNVRSGDCVVAF-SRR 467 (808)
Q Consensus 404 ~~~i~l-~~s~~~~~~i~~l~~~~~~~~~~~~~~r~~~~--~~~------------~~~ll~~l~~~~~g~~II~f-srk 467 (808)
...+++ +++++....++.++...........+...+.. .++ .-.+.+.+...-+...+||. +..
T Consensus 319 s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~e 398 (593)
T KOG0344|consen 319 SPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKE 398 (593)
T ss_pred CcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHH
Confidence 766554 56777777777766655544433333221110 011 11333444444455566666 778
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccccc-CccEEEEeCCccCCCCccccC
Q 003593 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDKIIPV 546 (808)
Q Consensus 468 ~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDi-pV~~VI~~~~~K~dg~~~~P~ 546 (808)
.+.+|+..|....++.+.++||..++.+|..++++|+. |+++|||||++++||||+ +|+.|||||. |.
T Consensus 399 Rak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~--g~IwvLicTdll~RGiDf~gvn~VInyD~---------p~ 467 (593)
T KOG0344|consen 399 RAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI--GKIWVLICTDLLARGIDFKGVNLVINYDF---------PQ 467 (593)
T ss_pred HHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc--cCeeEEEehhhhhccccccCcceEEecCC---------Cc
Confidence 99999999965568999999999999999999999986 999999999999999999 6999999999 99
Q ss_pred CHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHH
Q 003593 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (808)
Q Consensus 547 s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l 581 (808)
+.-+|+||+||+||+|+ .|.+|+||++++..+
T Consensus 468 s~~syihrIGRtgRag~---~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 468 SDLSYIHRIGRTGRAGR---SGKAITFYTDQDMPR 499 (593)
T ss_pred hhHHHHHHhhccCCCCC---CcceEEEeccccchh
Confidence 99999999999999999 899999998754433
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-33 Score=335.76 Aligned_cols=315 Identities=19% Similarity=0.221 Sum_probs=217.4
Q ss_pred HHHHHHHHCCCCCCcchh--hhHH-HhCCCeEEEEecCCCcHHHHHHHHHH-----hcCcEEEEcccHHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFAR-VMKRKIIYHCGPTNSGKTYNALQRFM-----EAKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~-~l~grdvlv~apTGSGKTl~~L~~L~-----~~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
.+++.+++.||..|+++| ++.. ++.|++++++||||||||+++..+++ .++++|||+|+++|+.|+++++..
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 11 RIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH
Confidence 456778899999999986 4443 68999999999999999999755443 356899999999999999998875
Q ss_pred c---ccccccccccccccc---ccCCeEEEeeecccC----C----CceeEEEEccchhhhcccchhHHHHHHhhccccc
Q 003593 341 L---GVYCSLLTGQEKKLV---PFSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE 406 (808)
Q Consensus 341 ~---g~~~~l~~g~~~~~~---~~~~~i~~t~e~l~~----~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~ 406 (808)
+ |..+..++|+..... ....++++|++.+.. . ..+++|||||+|++.+.++|..+..++..+....
T Consensus 91 ~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 91 WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 4 677777777654321 234577888865421 1 2289999999999999999999998888776655
Q ss_pred eeccCCchHHHHHHHHhhhcCCCcEE--------------EEeeecchhh-----hh-HHHHHHHHhhcCCCCEEEEe-c
Q 003593 407 IHLCGDPSVLDVVRKICSETGDELHE--------------QHYERFKPLV-----VE-AKTLLGDLRNVRSGDCVVAF-S 465 (808)
Q Consensus 407 i~l~~s~~~~~~i~~l~~~~~~~~~~--------------~~~~r~~~~~-----~~-~~~ll~~l~~~~~g~~II~f-s 465 (808)
+.+..+++... ...++.+.+...+. +.+....... .. ...+.+.+. ..+.++||+ +
T Consensus 171 qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~s 247 (720)
T PRK00254 171 QILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNT 247 (720)
T ss_pred cEEEEEccCCC-HHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcC
Confidence 55555555321 12222332221110 0000000000 00 012222232 234566666 5
Q ss_pred hhHHHHHHHHHHHh--------------------------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEE
Q 003593 466 RREIFEVKMAIEKH--------------------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513 (808)
Q Consensus 466 rk~~~~l~~~L~~~--------------------------------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~IL 513 (808)
|+.|+.++..|.+. ....+.++||+|++++|..+++.|++ |.++||
T Consensus 248 r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~--G~i~VL 325 (720)
T PRK00254 248 RRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE--GLIKVI 325 (720)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC--CCCeEE
Confidence 77777666555321 23469999999999999999999975 999999
Q ss_pred EECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCH--HHHHHHhcCCc
Q 003593 514 VASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL--DYLIECLKQPF 589 (808)
Q Consensus 514 VATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~--~~l~~~l~~~~ 589 (808)
|||+++++|+|+|...||..+..+|++.+..+.++.+|+||+|||||.|. ...|.++++...+. ..+.+++....
T Consensus 326 vaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~-d~~G~~ii~~~~~~~~~~~~~~~~~~p 402 (720)
T PRK00254 326 TATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY-DEVGEAIIVATTEEPSKLMERYIFGKP 402 (720)
T ss_pred EeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc-CCCceEEEEecCcchHHHHHHHHhCCc
Confidence 99999999999995555556666676555667788999999999999874 23799999986432 33555654433
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-33 Score=335.67 Aligned_cols=318 Identities=22% Similarity=0.283 Sum_probs=220.7
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHc-
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNAL- 341 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~- 341 (808)
.+++.+...+|. ++++| .+..++.|++++++||||||||++++.++. .++++|||+|+++||.|+++.++++
T Consensus 11 ~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~ 89 (674)
T PRK01172 11 EFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR 89 (674)
T ss_pred HHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh
Confidence 345667788887 77764 777789999999999999999999665554 4678999999999999999998764
Q ss_pred --cccccccccccccc---cccCCeEEEeeeccc----CC----CceeEEEEccchhhhcccchhHHHHHHhhc---ccc
Q 003593 342 --GVYCSLLTGQEKKL---VPFSNHIACTVEMVS----TD----EMYDVAVIDEIQMMSDACRGYAWTRALLGL---MAD 405 (808)
Q Consensus 342 --g~~~~l~~g~~~~~---~~~~~~i~~t~e~l~----~~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l---~~~ 405 (808)
|..+...+|+.... .....++++|++.+. .. ..+++|||||||++.+.++|..++.++..+ ...
T Consensus 90 ~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~ 169 (674)
T PRK01172 90 SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPD 169 (674)
T ss_pred hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcC
Confidence 66677777754332 124567788886431 11 128999999999999999999888776443 222
Q ss_pred ceeccCCchHHHHHHHHhhhcCCCcEE----------EEeee--cch--hhhhHHHHHHHHhh--cCCCCEEEEe-chhH
Q 003593 406 EIHLCGDPSVLDVVRKICSETGDELHE----------QHYER--FKP--LVVEAKTLLGDLRN--VRSGDCVVAF-SRRE 468 (808)
Q Consensus 406 ~i~l~~s~~~~~~i~~l~~~~~~~~~~----------~~~~r--~~~--~~~~~~~ll~~l~~--~~~g~~II~f-srk~ 468 (808)
...+..+++... ...++.+.+...+. ..+.. ... .......+...+.. ...++++||+ +++.
T Consensus 170 ~riI~lSATl~n-~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~ 248 (674)
T PRK01172 170 ARILALSATVSN-ANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKN 248 (674)
T ss_pred CcEEEEeCccCC-HHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHH
Confidence 233333444321 22233332221111 01000 000 00000012222222 2345667777 5788
Q ss_pred HHHHHHHHHHhc------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccc
Q 003593 469 IFEVKMAIEKHT------------------------NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524 (808)
Q Consensus 469 ~~~l~~~L~~~~------------------------g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GID 524 (808)
+..++..|.+.. ...+.++||+|++++|..+++.|++ |.++|||||+++++|+|
T Consensus 249 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~--g~i~VLvaT~~la~Gvn 326 (674)
T PRK01172 249 AEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN--RYIKVIVATPTLAAGVN 326 (674)
T ss_pred HHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHc--CCCeEEEecchhhccCC
Confidence 888888776431 1358899999999999999999965 99999999999999999
Q ss_pred cCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC--CHHHHHHHhcCCchh
Q 003593 525 LNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD--DLDYLIECLKQPFEV 591 (808)
Q Consensus 525 ipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~--d~~~l~~~l~~~~~~ 591 (808)
+|.+.||+.+.++|++....|.+..+|.||+|||||.|. +..|.++++... +...+.+++....++
T Consensus 327 ipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~-d~~g~~~i~~~~~~~~~~~~~~l~~~~~p 394 (674)
T PRK01172 327 LPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY-DQYGIGYIYAASPASYDAAKKYLSGEPEP 394 (674)
T ss_pred CcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC-CCcceEEEEecCcccHHHHHHHHcCCCCc
Confidence 998899999999998888889999999999999999995 336777777643 346677777544333
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-32 Score=335.00 Aligned_cols=358 Identities=17% Similarity=0.219 Sum_probs=225.2
Q ss_pred CCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-------------cCcEEEEcccHHHHHHHHHHHHH-
Q 003593 277 ADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-------------AKKGIYCSPLRLLAMEVFDKVNA- 340 (808)
Q Consensus 277 ~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-------------~~~~lvl~Ptr~La~Qi~~~l~~- 340 (808)
.+|..|+++| +++.+++|++++++||||||||++++.+++. +..+|||+|||+|+.|+++++..
T Consensus 28 ~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 28 EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 3788899875 7788899999999999999999996655431 12589999999999999886642
Q ss_pred ----------c-----ccccccccccccccc------ccCCeEEEeeeccc----CC------CceeEEEEccchhhhcc
Q 003593 341 ----------L-----GVYCSLLTGQEKKLV------PFSNHIACTVEMVS----TD------EMYDVAVIDEIQMMSDA 389 (808)
Q Consensus 341 ----------~-----g~~~~l~~g~~~~~~------~~~~~i~~t~e~l~----~~------~lv~~vVIDEAh~i~d~ 389 (808)
. ++.+.+.+|+..... ....++++||+.+. .. ..+++|||||||++.+.
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAEN 187 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccC
Confidence 1 334456667654322 13456778887652 11 12899999999999988
Q ss_pred cchhHHHHHHhhcc----ccceeccCCchHH---HHHHHHhhhc----CCCc-EE-EEeee------cchh--------h
Q 003593 390 CRGYAWTRALLGLM----ADEIHLCGDPSVL---DVVRKICSET----GDEL-HE-QHYER------FKPL--------V 442 (808)
Q Consensus 390 ~~g~~~~~~l~~l~----~~~i~l~~s~~~~---~~i~~l~~~~----~~~~-~~-~~~~r------~~~~--------~ 442 (808)
.+|..+...+..+. ...+.+..++|+. .+...+.... .... ++ ..+.+ ..+. .
T Consensus 188 ~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~ 267 (876)
T PRK13767 188 KRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAE 267 (876)
T ss_pred ccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccc
Confidence 89988765553332 2334444454432 2222222110 1111 11 00100 0010 0
Q ss_pred hhHHHHHHHHhh--cCCCCEEEEe-chhHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEE
Q 003593 443 VEAKTLLGDLRN--VRSGDCVVAF-SRREIFEVKMAIEKHT-----NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLV 514 (808)
Q Consensus 443 ~~~~~ll~~l~~--~~~g~~II~f-srk~~~~l~~~L~~~~-----g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILV 514 (808)
.....+...+.. ...++++||+ |++.|+.++..|.+.. +..+.++||+|++++|..+++.|++ |+++|||
T Consensus 268 ~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~--G~i~vLV 345 (876)
T PRK13767 268 EISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR--GELKVVV 345 (876)
T ss_pred hhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc--CCCeEEE
Confidence 001122222221 1234566666 5788999999987632 4689999999999999999999965 9999999
Q ss_pred ECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHH---HH-HHhcCCc
Q 003593 515 ASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY---LI-ECLKQPF 589 (808)
Q Consensus 515 ATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~---l~-~~l~~~~ 589 (808)
||+++++|||+| |++||+++. |.++.+|+||+|||||.+...+.|.++.....+... +. ...+...
T Consensus 346 aTs~Le~GIDip~Vd~VI~~~~---------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~i 416 (876)
T PRK13767 346 SSTSLELGIDIGYIDLVVLLGS---------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKI 416 (876)
T ss_pred ECChHHhcCCCCCCcEEEEeCC---------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCC
Confidence 999999999998 999999999 999999999999999975433467777754444322 12 2233333
Q ss_pred hhhHH--hCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCCcccCCcchHHHHHHHHHH
Q 003593 590 EVVKK--VGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650 (808)
Q Consensus 590 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~l~~ 650 (808)
+++.. ........++..++.. ...+..++.+.+...+ .|..-..++...+.+.|..
T Consensus 417 e~~~~~~~~~dvl~q~i~~~~~~-~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~l~~l~~ 474 (876)
T PRK13767 417 DRVHIPKNPLDVLAQHIVGMAIE-RPWDIEEAYNIVRRAY----PYRDLSDEDFESVLRYLAG 474 (876)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHc-CCCCHHHHHHHHhccC----CcccCCHHHHHHHHHHHhc
Confidence 32211 0111123455555444 4566777777665442 2223334455556665544
No 46
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.98 E-value=3.2e-32 Score=300.19 Aligned_cols=306 Identities=16% Similarity=0.175 Sum_probs=232.0
Q ss_pred hhhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHH----HHHHHH---hcCcEE
Q 003593 252 FPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN----ALQRFM---EAKKGI 322 (808)
Q Consensus 252 ~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~----~L~~L~---~~~~~l 322 (808)
.|-|+++.+. ..++..|+..+|..||++| +||.++.+-|+|+.|..|+|||++ ++..+. .....+
T Consensus 24 ~~~fe~l~l~------r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~ 97 (980)
T KOG4284|consen 24 TPGFEQLALW------REVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKV 97 (980)
T ss_pred CCCHHHHHHH------HHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeE
Confidence 3566665543 3667788899999999986 788889999999999999999998 344443 235789
Q ss_pred EEcccHHHHHHHHHHHHHcc-----cccccccccccccc-----ccCCeEEEeeec---------ccCCCceeEEEEccc
Q 003593 323 YCSPLRLLAMEVFDKVNALG-----VYCSLLTGQEKKLV-----PFSNHIACTVEM---------VSTDEMYDVAVIDEI 383 (808)
Q Consensus 323 vl~Ptr~La~Qi~~~l~~~g-----~~~~l~~g~~~~~~-----~~~~~i~~t~e~---------l~~~~lv~~vVIDEA 383 (808)
|++|||++|.|+.+.+.+.+ ..|.++.|+..-.. ....+++.||.. +.+.. ++++|+|||
T Consensus 98 Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~-vrlfVLDEA 176 (980)
T KOG4284|consen 98 IVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSH-VRLFVLDEA 176 (980)
T ss_pred EEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccc-eeEEEeccH
Confidence 99999999999999998874 45766655543322 233445556522 22222 899999999
Q ss_pred hhhhc-ccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCC-cEE-------------EEeeecc-h-hhhh--
Q 003593 384 QMMSD-ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDE-LHE-------------QHYERFK-P-LVVE-- 444 (808)
Q Consensus 384 h~i~d-~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~-~~~-------------~~~~r~~-~-~~~~-- 444 (808)
|.+.+ ..|.+++..++..||+.++.+.++++.......++....++ ..+ +++...+ + ..++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveem 256 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEM 256 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHH
Confidence 99998 67899999999999999998888888766655544433222 111 2222111 1 1111
Q ss_pred ---HHHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCc
Q 003593 445 ---AKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVG 520 (808)
Q Consensus 445 ---~~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~ 520 (808)
...|-..+...+-...+||++ ..+|+.++..|... |+.|.++.|.|++.+|..+++.+++ -.++|||+||..+
T Consensus 257 rlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss-G~d~~~ISgaM~Q~~Rl~a~~~lr~--f~~rILVsTDLta 333 (980)
T KOG4284|consen 257 RLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS-GLDVTFISGAMSQKDRLLAVDQLRA--FRVRILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc-CCCeEEeccccchhHHHHHHHHhhh--ceEEEEEecchhh
Confidence 123333445555566777775 57899999999875 9999999999999999999999975 8999999999999
Q ss_pred cccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHH
Q 003593 521 MGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579 (808)
Q Consensus 521 ~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~ 579 (808)
||||-| |.+|||.|. |.+-++|.||||||||+|. .|.+++|+.+..+
T Consensus 334 RGIDa~~vNLVVNiD~---------p~d~eTY~HRIGRAgRFG~---~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDA---------PADEETYFHRIGRAGRFGA---HGAAVTLLEDERE 381 (980)
T ss_pred ccCCccccceEEecCC---------CcchHHHHHHhhhcccccc---cceeEEEeccchh
Confidence 999998 999999999 9999999999999999999 8999999965443
No 47
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=2.3e-31 Score=319.32 Aligned_cols=306 Identities=17% Similarity=0.198 Sum_probs=208.5
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHh----cCcEEEEcccHHHHHHHHHHHH-Hcccccccccccccccc----ccCCeE
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFME----AKKGIYCSPLRLLAMEVFDKVN-ALGVYCSLLTGQEKKLV----PFSNHI 362 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~----~~~~lvl~Ptr~La~Qi~~~l~-~~g~~~~l~~g~~~~~~----~~~~~i 362 (808)
..++++|++||||||||++++++++. ++++||+.|+|++|.|+++++. .++..++...|...+.. ....++
T Consensus 15 ~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s~~t~I~ 94 (819)
T TIGR01970 15 AAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLE 94 (819)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccCCCCcEE
Confidence 67889999999999999998888774 3578999999999999999996 45655554444433321 223456
Q ss_pred EEeeecccC-----C--CceeEEEEccchh-hhcccchhHHHH-HHhhccccceeccCCchHHHH-HHHHhhhc------
Q 003593 363 ACTVEMVST-----D--EMYDVAVIDEIQM-MSDACRGYAWTR-ALLGLMADEIHLCGDPSVLDV-VRKICSET------ 426 (808)
Q Consensus 363 ~~t~e~l~~-----~--~lv~~vVIDEAh~-i~d~~~g~~~~~-~l~~l~~~~i~l~~s~~~~~~-i~~l~~~~------ 426 (808)
++|+.++.. . ..+++|||||||. +++.+++..+.. +...++.....+++++|.... ...+....
T Consensus 95 v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~~~~vI~~~ 174 (819)
T TIGR01970 95 VVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESE 174 (819)
T ss_pred EECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcCCCcEEEec
Confidence 677644321 1 1289999999995 677666665543 333455555556666654322 22222110
Q ss_pred CCC-cEEEEeeecchh-hhh--HHHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHHh--cCCeEEEEcCCCCHHHHHHH
Q 003593 427 GDE-LHEQHYERFKPL-VVE--AKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH--TNHHCCVIYGALPPETRRQQ 499 (808)
Q Consensus 427 ~~~-~~~~~~~r~~~~-~~~--~~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~--~g~~v~~lhg~l~~~~R~~~ 499 (808)
+.. .+.+.|...... ... ....+..+.....|+++||++ ..++..++..|.+. .++.+.++||+|++++|.++
T Consensus 175 gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~ 254 (819)
T TIGR01970 175 GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRA 254 (819)
T ss_pred CcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHH
Confidence 111 111222111110 000 011222233335688888884 68899999988763 36889999999999999999
Q ss_pred HHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHhCccCCCCCCCCceE
Q 003593 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIYPDGL 569 (808)
Q Consensus 500 ~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ 569 (808)
++.|. +|+.+||||||++++||||| |++||++|++| ||.. ...|.|.++|.||+|||||.+ .|.
T Consensus 255 ~~~~~--~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~----~G~ 328 (819)
T TIGR01970 255 IKPDP--QGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE----PGV 328 (819)
T ss_pred Hhhcc--cCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC----CCE
Confidence 99995 59999999999999999998 99999999875 5533 357889999999999999995 499
Q ss_pred EEEEecCCHHHHHHHhcCCchhhHHhCCCCcHHHHH
Q 003593 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVE 605 (808)
Q Consensus 570 ~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 605 (808)
||.|++++.. ..+.....+++.+..+.....++.
T Consensus 329 cyrL~t~~~~--~~l~~~~~PEI~r~~L~~~~L~l~ 362 (819)
T TIGR01970 329 CYRLWSEEQH--QRLPAQDEPEILQADLSGLALELA 362 (819)
T ss_pred EEEeCCHHHH--HhhhcCCCcceeccCcHHHHHHHH
Confidence 9999987543 344455667776666544433333
No 48
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=4.6e-32 Score=287.84 Aligned_cols=310 Identities=19% Similarity=0.214 Sum_probs=236.2
Q ss_pred hhhHhhhcccCchHHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh--------cCcEE
Q 003593 253 PIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME--------AKKGI 322 (808)
Q Consensus 253 p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~--------~~~~l 322 (808)
..|.++++.. ++.++|.+.||..|||+| .+|.+|.++|++..|-||||||.|++.++++ +-+++
T Consensus 21 g~fqsmgL~~------~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ral 94 (529)
T KOG0337|consen 21 GGFQSMGLDY------KVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRAL 94 (529)
T ss_pred CCccccCCCH------HHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcccccccee
Confidence 3466666554 667889999999999996 8888999999999999999999997766653 23789
Q ss_pred EEcccHHHHHHHHHHHHHcccc----cccc-cccccccc----c-cCCeEEEeeecc--------cCCCceeEEEEccch
Q 003593 323 YCSPLRLLAMEVFDKVNALGVY----CSLL-TGQEKKLV----P-FSNHIACTVEMV--------STDEMYDVAVIDEIQ 384 (808)
Q Consensus 323 vl~Ptr~La~Qi~~~l~~~g~~----~~l~-~g~~~~~~----~-~~~~i~~t~e~l--------~~~~lv~~vVIDEAh 384 (808)
+++|||+||.|..+.++.+|.- +.++ +|+....+ . ...++++|+..+ -....+.+||+||||
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 9999999999999999998764 3333 34333321 1 233455565322 112228999999999
Q ss_pred hhhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcE-EE-------------EeeecchhhhhHHHHHH
Q 003593 385 MMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELH-EQ-------------HYERFKPLVVEAKTLLG 450 (808)
Q Consensus 385 ~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~-~~-------------~~~r~~~~~~~~~~ll~ 450 (808)
.+..|||......++..++..+++++++++........++....+.. +. .|.+..+. .....|+.
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a-~K~aaLl~ 253 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA-EKEAALLS 253 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH-HHHHHHHH
Confidence 99999999999999999999999999999877665555544332221 11 11111111 11234555
Q ss_pred HHhhcCC-CCEEEEechhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-cc
Q 003593 451 DLRNVRS-GDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IR 528 (808)
Q Consensus 451 ~l~~~~~-g~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~ 528 (808)
.+..... ...++|+.++...+....+....|+.+..+||.|.+..|.....+|+. ++..+||.||+++||+||| .+
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~--~k~~~lvvTdvaaRG~diplld 331 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG--RKTSILVVTDVAARGLDIPLLD 331 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC--CccceEEEehhhhccCCCcccc
Confidence 5544333 346777777777777777777779999999999999999999999976 9999999999999999999 99
Q ss_pred EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC-CHHHHHH
Q 003593 529 RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD-DLDYLIE 583 (808)
Q Consensus 529 ~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~-d~~~l~~ 583 (808)
.|||||. |.+..-|+||+||+.|+|+ .|.+|.|+.. +..++..
T Consensus 332 nvinyd~---------p~~~klFvhRVgr~aragr---tg~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 332 NVINYDF---------PPDDKLFVHRVGRVARAGR---TGRAYSLVASTDDPYLLD 375 (529)
T ss_pred ccccccC---------CCCCceEEEEecchhhccc---cceEEEEEecccchhhhh
Confidence 9999999 9999999999999999999 8999999964 4444433
No 49
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=6.9e-31 Score=315.89 Aligned_cols=306 Identities=19% Similarity=0.212 Sum_probs=206.5
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHhc----CcEEEEcccHHHHHHHHHHHHH-ccccccccccccccc----cccCCeE
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFMEA----KKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKL----VPFSNHI 362 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~~----~~~lvl~Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~----~~~~~~i 362 (808)
.++++++++||||||||+++++++++. +++||+.|||++|.|+++++.+ +|..++..+|...+. .....++
T Consensus 18 ~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~~~t~I~ 97 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLE 97 (812)
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccCCCCcEE
Confidence 678999999999999999988888753 4789999999999999999964 465555444443332 1234566
Q ss_pred EEeeecccC-----C--CceeEEEEccchhh-hcccchhHHH-HHHhhccccceeccCCchHHHH-HHHHhhhc------
Q 003593 363 ACTVEMVST-----D--EMYDVAVIDEIQMM-SDACRGYAWT-RALLGLMADEIHLCGDPSVLDV-VRKICSET------ 426 (808)
Q Consensus 363 ~~t~e~l~~-----~--~lv~~vVIDEAh~i-~d~~~g~~~~-~~l~~l~~~~i~l~~s~~~~~~-i~~l~~~~------ 426 (808)
++|+.++.. . ..+++|||||||.. .+.+..-.+. .++..++.....+++++|.... ...+....
T Consensus 98 v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~l~~~~~~~~~I~~~ 177 (812)
T PRK11664 98 VVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLPDAPVIVSE 177 (812)
T ss_pred EEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHHHHHhcCCCCEEEec
Confidence 777644321 1 12899999999984 4433322332 3334455555556666654321 22222110
Q ss_pred CCC-cEEEEeeecch-hhhhH--HHHHHHHhhcCCCCEEEEe-chhHHHHHHHHHHHh--cCCeEEEEcCCCCHHHHHHH
Q 003593 427 GDE-LHEQHYERFKP-LVVEA--KTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKH--TNHHCCVIYGALPPETRRQQ 499 (808)
Q Consensus 427 ~~~-~~~~~~~r~~~-~~~~~--~~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~--~g~~v~~lhg~l~~~~R~~~ 499 (808)
+.. .+.+.|..... ..... ...+..+.....|+++||+ +..++..++..|.+. .++.+..+||+|++++|.++
T Consensus 178 gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~ 257 (812)
T PRK11664 178 GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKA 257 (812)
T ss_pred CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHH
Confidence 000 11122211110 01110 1122333334568888888 468999999999862 36889999999999999999
Q ss_pred HHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHhCccCCCCCCCCceE
Q 003593 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIYPDGL 569 (808)
Q Consensus 500 ~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ 569 (808)
++.|. +|+.+||||||++++||||| |++||+++++| ||.. ...+.|.++|.||+|||||.+. |.
T Consensus 258 ~~~~~--~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~----G~ 331 (812)
T PRK11664 258 ILPAP--AGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP----GI 331 (812)
T ss_pred hcccc--CCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC----cE
Confidence 99995 59999999999999999998 99999999875 6533 3567899999999999999965 99
Q ss_pred EEEEecCCHHHHHHHhcCCchhhHHhCCCCcHHHHH
Q 003593 570 TTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVE 605 (808)
Q Consensus 570 ~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 605 (808)
||.|++++.. ..+.....+++.+..+.+....+.
T Consensus 332 cyrL~t~~~~--~~l~~~~~PEI~r~dL~~~~L~l~ 365 (812)
T PRK11664 332 CLHLYSKEQA--ERAAAQSEPEILHSDLSGLLLELL 365 (812)
T ss_pred EEEecCHHHH--hhCccCCCCceeccchHHHHHHHH
Confidence 9999987643 345556677777666544444443
No 50
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.1e-31 Score=285.65 Aligned_cols=301 Identities=19% Similarity=0.246 Sum_probs=185.7
Q ss_pred HHHHHHCCCCCCcchh--hhHH---------HhCCCeEEEEecCCCcHHHHHHHHHHh----c----CcEEEEcccHHHH
Q 003593 271 RAMIESADLTKPHTWF--PFAR---------VMKRKIIYHCGPTNSGKTYNALQRFME----A----KKGIYCSPLRLLA 331 (808)
Q Consensus 271 ~~~l~~~g~~~pt~~~--~i~~---------~l~grdvlv~apTGSGKTl~~L~~L~~----~----~~~lvl~Ptr~La 331 (808)
..++.++++++-.|+| .++. ....+|+.|.||||||||++|..++.. . -++|||+|||+|+
T Consensus 149 ~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~ 228 (620)
T KOG0350|consen 149 DQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELA 228 (620)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHH
Confidence 3455566666665543 1111 145899999999999999996555542 2 2789999999999
Q ss_pred HHHHHHHHHcccc----cccccccccccc------c-----cCCeEEEeeecc----cC-CC----ceeEEEEccchhhh
Q 003593 332 MEVFDKVNALGVY----CSLLTGQEKKLV------P-----FSNHIACTVEMV----ST-DE----MYDVAVIDEIQMMS 387 (808)
Q Consensus 332 ~Qi~~~l~~~g~~----~~l~~g~~~~~~------~-----~~~~i~~t~e~l----~~-~~----lv~~vVIDEAh~i~ 387 (808)
.|+++.+..+.-. ++..+|+..-.. . ...++++||..| +. .. .+.++||||||+|+
T Consensus 229 ~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 229 LQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 9999999988444 444444432110 0 124455555322 21 11 17899999999999
Q ss_pred cccchhHHHHHHhhcccc---------cee--------------------------ccCCchHHHHHHHHhhhcC-CCcE
Q 003593 388 DACRGYAWTRALLGLMAD---------EIH--------------------------LCGDPSVLDVVRKICSETG-DELH 431 (808)
Q Consensus 388 d~~~g~~~~~~l~~l~~~---------~i~--------------------------l~~s~~~~~~i~~l~~~~~-~~~~ 431 (808)
+..|. .|-..++.+..+ .+. +..+++......++..... ....
T Consensus 309 ~qsfQ-~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl 387 (620)
T KOG0350|consen 309 DQSFQ-EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRL 387 (620)
T ss_pred HHHHH-HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCce
Confidence 86443 333333222111 011 1111111111111111100 0101
Q ss_pred EEEe----eecc-hhhh-----------hHHHHHHHHhhcCCCCEEEEec--hhHHHHHHHHHH---HhcCCeEEEEcCC
Q 003593 432 EQHY----ERFK-PLVV-----------EAKTLLGDLRNVRSGDCVVAFS--RREIFEVKMAIE---KHTNHHCCVIYGA 490 (808)
Q Consensus 432 ~~~~----~r~~-~~~~-----------~~~~ll~~l~~~~~g~~II~fs--rk~~~~l~~~L~---~~~g~~v~~lhg~ 490 (808)
.+.+ .|+. |..+ ....+...+ ...+...++||+ ...+..++..|. .....++..+.|+
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI-~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~ 466 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALI-TSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQ 466 (620)
T ss_pred EEeecccceeeecChhhhhceeecccccchHhHHHHH-HHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhh
Confidence 1111 1110 1000 111233333 334455566664 345555555554 2246677889999
Q ss_pred CCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceE
Q 003593 491 LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569 (808)
Q Consensus 491 l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ 569 (808)
++...|.+.++.|+. |++.||||||+++||||+. |+.|||||+ |.+..+|+||+||+||+|. .|.
T Consensus 467 l~~k~r~k~l~~f~~--g~i~vLIcSD~laRGiDv~~v~~VINYd~---------P~~~ktyVHR~GRTARAgq---~G~ 532 (620)
T KOG0350|consen 467 LNGKRRYKMLEKFAK--GDINVLICSDALARGIDVNDVDNVINYDP---------PASDKTYVHRAGRTARAGQ---DGY 532 (620)
T ss_pred hhHHHHHHHHHHHhc--CCceEEEehhhhhcCCcccccceEeecCC---------CchhhHHHHhhcccccccC---Cce
Confidence 999999999999976 9999999999999999995 999999999 9999999999999999999 899
Q ss_pred EEEEecCC-HHHHHHHhcC
Q 003593 570 TTTLNLDD-LDYLIECLKQ 587 (808)
Q Consensus 570 ~i~l~~~d-~~~l~~~l~~ 587 (808)
|+++.... ...+.+++++
T Consensus 533 a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 533 AITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred EEEeeccccchHHHHHHHH
Confidence 99999654 4445555544
No 51
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1e-30 Score=276.78 Aligned_cols=296 Identities=20% Similarity=0.224 Sum_probs=226.9
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHhc-------CcEEEEcccHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFMEA-------KKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~~-------~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
.+++-+..-||..|+.+| +|..+..|+|+++.+++|+|||.+++.+++.. ..+|+++|+|+||.|+.+...
T Consensus 36 ~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~ 115 (397)
T KOG0327|consen 36 SLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVR 115 (397)
T ss_pred HHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHH
Confidence 566788899999999986 66667999999999999999999966665543 367999999999999999888
Q ss_pred Hcccccc-----ccccccccc-----cccCCeE-EEee----ecccCCCc----eeEEEEccchhhhcccchhHHHHHHh
Q 003593 340 ALGVYCS-----LLTGQEKKL-----VPFSNHI-ACTV----EMVSTDEM----YDVAVIDEIQMMSDACRGYAWTRALL 400 (808)
Q Consensus 340 ~~g~~~~-----l~~g~~~~~-----~~~~~~i-~~t~----e~l~~~~l----v~~vVIDEAh~i~d~~~g~~~~~~l~ 400 (808)
.+|...+ ++.|..... ....+++ +.|+ .|+....+ +.++|+||||+|+..||...+..++.
T Consensus 116 ~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~ 195 (397)
T KOG0327|consen 116 ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQ 195 (397)
T ss_pred hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHH
Confidence 8865432 333333331 1223444 4565 55544433 89999999999999999999999999
Q ss_pred hccccceeccCCchHHHHHHHHhhhcCCC--------------cEEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEe-c
Q 003593 401 GLMADEIHLCGDPSVLDVVRKICSETGDE--------------LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-S 465 (808)
Q Consensus 401 ~l~~~~i~l~~s~~~~~~i~~l~~~~~~~--------------~~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f-s 465 (808)
.++...+.++.+++....+..+......+ -+.+.|.+..+-. ....++..+. .....++|+ +
T Consensus 196 ~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~--~~~q~~if~nt 272 (397)
T KOG0327|consen 196 ELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR--RVTQAVIFCNT 272 (397)
T ss_pred HcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH--hhhcceEEecc
Confidence 99999888888877665555544433322 2233333222111 1123444444 333445555 7
Q ss_pred hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccccc-CccEEEEeCCccCCCCccc
Q 003593 466 RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDKII 544 (808)
Q Consensus 466 rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDi-pV~~VI~~~~~K~dg~~~~ 544 (808)
++.+..+...|.. .++.+..+||.|.+.+|..+...|+. |..+|||.|+.++||||+ .+..||+|++
T Consensus 273 ~r~v~~l~~~L~~-~~~~~s~~~~d~~q~~R~~~~~ef~~--gssrvlIttdl~argidv~~~slvinydl--------- 340 (397)
T KOG0327|consen 273 RRKVDNLTDKLRA-HGFTVSAIHGDMEQNERDTLMREFRS--GSSRVLITTDLLARGIDVQQVSLVVNYDL--------- 340 (397)
T ss_pred hhhHHHHHHHHhh-CCceEEEeecccchhhhhHHHHHhhc--CCceEEeeccccccccchhhcceeeeecc---------
Confidence 8999999999965 59999999999999999999999965 999999999999999999 5999999999
Q ss_pred cCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHH
Q 003593 545 PVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (808)
Q Consensus 545 P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~ 582 (808)
|...++|+||+||+||.|. +|.+++++++++....
T Consensus 341 P~~~~~yihR~gr~gr~gr---kg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGR---KGVAINFVTEEDVRDL 375 (397)
T ss_pred ccchhhhhhhcccccccCC---CceeeeeehHhhHHHH
Confidence 9999999999999999999 9999999987554433
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=7.9e-30 Score=309.04 Aligned_cols=282 Identities=17% Similarity=0.196 Sum_probs=193.5
Q ss_pred HHHCCCCCCcchh--hhHHHhCC------CeEEEEecCCCcHHHHHHHH----HHhcCcEEEEcccHHHHHHHHHHHHHc
Q 003593 274 IESADLTKPHTWF--PFARVMKR------KIIYHCGPTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 274 l~~~g~~~pt~~~--~i~~~l~g------rdvlv~apTGSGKTl~~L~~----L~~~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
....+|. ||+.| ++..++++ +|++++||||||||.+++.+ +..+++++|++||++||.|+++.++++
T Consensus 445 ~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 445 EDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred HHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 3456885 88864 66666664 79999999999999996544 345678999999999999999998875
Q ss_pred ----cccccccccccccc--------c--ccCCeEEEeeecccCC---CceeEEEEccchhhhcccchhHHHHHHhhccc
Q 003593 342 ----GVYCSLLTGQEKKL--------V--PFSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404 (808)
Q Consensus 342 ----g~~~~l~~g~~~~~--------~--~~~~~i~~t~e~l~~~---~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~ 404 (808)
++.+.+++|..... . ....++++|+.++... ..++++||||+|++ |......+..+..
T Consensus 524 ~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~ 598 (926)
T TIGR00580 524 FANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRT 598 (926)
T ss_pred hccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeeccccc-----chhHHHHHHhcCC
Confidence 44555555543211 0 1235677888776532 22899999999995 4455666666665
Q ss_pred cceeccCCchHHHHHHHHhh-hcCC-----------CcEEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEec-hhHHHH
Q 003593 405 DEIHLCGDPSVLDVVRKICS-ETGD-----------ELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS-RREIFE 471 (808)
Q Consensus 405 ~~i~l~~s~~~~~~i~~l~~-~~~~-----------~~~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~fs-rk~~~~ 471 (808)
....++.++|...-...+.. ...+ ..+.+.+..... ..-...+...+. ..+.++||++ ...+..
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~~~i~~el~--~g~qv~if~n~i~~~e~ 675 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVREAIRRELL--RGGQVFYVHNRIESIEK 675 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHHHHHHHHHH--cCCeEEEEECCcHHHHH
Confidence 54455444442221111111 0000 011111111111 000112222222 2344555554 467888
Q ss_pred HHHHHHHh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHh
Q 003593 472 VKMAIEKH-TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGS 549 (808)
Q Consensus 472 l~~~L~~~-~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~ 549 (808)
++..|.+. .+.++..+||+|++++|.+++++|++ |+++|||||+++++|||+| |++||+++.+. .+.+
T Consensus 676 l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~--------~gls 745 (926)
T TIGR00580 676 LATQLRELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQVLVCTTIIETGIDIPNANTIIIERADK--------FGLA 745 (926)
T ss_pred HHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcccccccCCEEEEecCCC--------CCHH
Confidence 88888864 36899999999999999999999965 9999999999999999998 99999999732 2678
Q ss_pred HHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 550 QVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 550 ~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
+|+||+||+||.|. .|.|++|+.++
T Consensus 746 ~l~Qr~GRvGR~g~---~g~aill~~~~ 770 (926)
T TIGR00580 746 QLYQLRGRVGRSKK---KAYAYLLYPHQ 770 (926)
T ss_pred HHHHHhcCCCCCCC---CeEEEEEECCc
Confidence 99999999999999 89999999654
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=8.8e-30 Score=299.25 Aligned_cols=283 Identities=17% Similarity=0.098 Sum_probs=186.9
Q ss_pred hhHHHhCCCeEEEEecCCCcHHHHHHHHHH-------------------hcCcEEEEcccHHHHHHHHHHHHHc-c----
Q 003593 287 PFARVMKRKIIYHCGPTNSGKTYNALQRFM-------------------EAKKGIYCSPLRLLAMEVFDKVNAL-G---- 342 (808)
Q Consensus 287 ~i~~~l~grdvlv~apTGSGKTl~~L~~L~-------------------~~~~~lvl~Ptr~La~Qi~~~l~~~-g---- 342 (808)
.++.+++|+++|++|+||||||+++.+.++ ..++++|++|||+||.|+..++.+. |
T Consensus 172 il~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~ 251 (675)
T PHA02653 172 IFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEI 251 (675)
T ss_pred HHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCcccc
Confidence 455568999999999999999998332221 1246889999999999999998753 2
Q ss_pred --ccccccccccccc-----cccCCeEEEeeeccc-CCCceeEEEEccchhhhcccchhHHHHHHhhcc-ccceeccCCc
Q 003593 343 --VYCSLLTGQEKKL-----VPFSNHIACTVEMVS-TDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIHLCGDP 413 (808)
Q Consensus 343 --~~~~l~~g~~~~~-----~~~~~~i~~t~e~l~-~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~-~~~i~l~~s~ 413 (808)
.++.+..|+.... ......+++|..+.. .-..+++|||||||+++.+ +.....++..+. ..++.+++|+
T Consensus 252 ~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~~~~~rq~ILmSA 329 (675)
T PHA02653 252 DGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKHIDKIRSLFLMTA 329 (675)
T ss_pred CCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccc--hhHHHHHHHHhhhhcCEEEEEcc
Confidence 2234444443221 112345566654322 1223899999999999875 333333333332 2246777888
Q ss_pred hHHHHHHHHhhhcCCCc-----------EEEEeeecc--------hhhhhHHHHHHHHhh---cCCCCEEEEe-chhHHH
Q 003593 414 SVLDVVRKICSETGDEL-----------HEQHYERFK--------PLVVEAKTLLGDLRN---VRSGDCVVAF-SRREIF 470 (808)
Q Consensus 414 ~~~~~i~~l~~~~~~~~-----------~~~~~~r~~--------~~~~~~~~ll~~l~~---~~~g~~II~f-srk~~~ 470 (808)
|..+.++.+........ +.+.|.... ........++..+.. ...++++||+ ++.++.
T Consensus 330 Tl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~ 409 (675)
T PHA02653 330 TLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCE 409 (675)
T ss_pred CCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHH
Confidence 87544444433222111 122221100 011122234444433 2346777777 468899
Q ss_pred HHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCC---CCcccc
Q 003593 471 EVKMAIEKHT-NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYN---GDKIIP 545 (808)
Q Consensus 471 ~l~~~L~~~~-g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~d---g~~~~P 545 (808)
.++..|.+.. ++.+.++||+|++. ++++++|. ++|+.+||||||++++||||| |++||++|..|.. +....|
T Consensus 410 ~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff-~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~ 486 (675)
T PHA02653 410 EYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVY-SSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMF 486 (675)
T ss_pred HHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHh-ccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccc
Confidence 9999998653 68999999999985 46677773 259999999999999999998 9999999954431 223456
Q ss_pred CCHhHHHHHhCccCCCCCCCCceEEEEEecCCH
Q 003593 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578 (808)
Q Consensus 546 ~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~ 578 (808)
.|.++|.||+|||||.+ .|.|+.|++++.
T Consensus 487 iSkasa~QRaGRAGR~~----~G~c~rLyt~~~ 515 (675)
T PHA02653 487 ISKSMRTQRKGRVGRVS----PGTYVYFYDLDL 515 (675)
T ss_pred cCHHHHHHhccCcCCCC----CCeEEEEECHHH
Confidence 79999999999999994 599999998764
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.4e-29 Score=312.89 Aligned_cols=284 Identities=16% Similarity=0.216 Sum_probs=197.0
Q ss_pred HHHHHHCCCCCCcchh--hhHHHhCC------CeEEEEecCCCcHHHHHHHH----HHhcCcEEEEcccHHHHHHHHHHH
Q 003593 271 RAMIESADLTKPHTWF--PFARVMKR------KIIYHCGPTNSGKTYNALQR----FMEAKKGIYCSPLRLLAMEVFDKV 338 (808)
Q Consensus 271 ~~~l~~~g~~~pt~~~--~i~~~l~g------rdvlv~apTGSGKTl~~L~~----L~~~~~~lvl~Ptr~La~Qi~~~l 338 (808)
.+.....+| .||+.| +++.++.+ +|++++||||||||.+++.+ +..+++++|++||++||.|+++.+
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f 669 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNF 669 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHH
Confidence 355667888 688865 77777776 89999999999999875433 345778999999999999999999
Q ss_pred HHc----cccccccccccccc--------c--ccCCeEEEeeecccCC---CceeEEEEccchhhhcccchhHHHHHHhh
Q 003593 339 NAL----GVYCSLLTGQEKKL--------V--PFSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLG 401 (808)
Q Consensus 339 ~~~----g~~~~l~~g~~~~~--------~--~~~~~i~~t~e~l~~~---~lv~~vVIDEAh~i~d~~~g~~~~~~l~~ 401 (808)
++. ++.+.+++|..... . ....++++|+.++... ..++++||||+|++. ......+..
T Consensus 670 ~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG-----~~~~e~lk~ 744 (1147)
T PRK10689 670 RDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFG-----VRHKERIKA 744 (1147)
T ss_pred HHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcc-----hhHHHHHHh
Confidence 864 34444454432211 0 1245678888777532 238999999999973 344556666
Q ss_pred ccccceeccCCchHHHHHHHHhhhcCCCc------------EEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEec-hhH
Q 003593 402 LMADEIHLCGDPSVLDVVRKICSETGDEL------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS-RRE 468 (808)
Q Consensus 402 l~~~~i~l~~s~~~~~~i~~l~~~~~~~~------------~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~fs-rk~ 468 (808)
++.....+++++|...-...++.....+. +.+.+........ ...++..+. ..+.++||++ ...
T Consensus 745 l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~-k~~il~el~--r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 745 MRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV-REAILREIL--RGGQVYYLYNDVEN 821 (1147)
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHH-HHHHHHHHh--cCCeEEEEECCHHH
Confidence 77666667666664332222222111111 1111111111111 123333332 2345666664 467
Q ss_pred HHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccC
Q 003593 469 IFEVKMAIEKHT-NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPV 546 (808)
Q Consensus 469 ~~~l~~~L~~~~-g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~ 546 (808)
+..++..|.+.. +.++.++||+|++++|.+++.+|++ |+++|||||+++++|||+| |++||..+... .
T Consensus 822 ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~--------f 891 (1147)
T PRK10689 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGIDIPTANTIIIERADH--------F 891 (1147)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEECchhhcccccccCCEEEEecCCC--------C
Confidence 888888887652 6789999999999999999999975 9999999999999999998 99999765422 2
Q ss_pred CHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 547 s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
+..+|+||+||+||.|. .|.|++++.+
T Consensus 892 glaq~~Qr~GRvGR~g~---~g~a~ll~~~ 918 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHH---QAYAWLLTPH 918 (1147)
T ss_pred CHHHHHHHhhccCCCCC---ceEEEEEeCC
Confidence 66789999999999999 8999999854
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=3.1e-29 Score=299.58 Aligned_cols=281 Identities=17% Similarity=0.208 Sum_probs=189.4
Q ss_pred HHHHHCCCCCCcchh--hhHHHhCC------CeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHH
Q 003593 272 AMIESADLTKPHTWF--PFARVMKR------KIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 272 ~~l~~~g~~~pt~~~--~i~~~l~g------rdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
..+..++| .||++| +++.+..+ .+++++||||||||++++.+++ .+.+++|++||++||.|+++.++
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~ 331 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLK 331 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHH
Confidence 34557788 488864 56656665 4899999999999999655543 45689999999999999999988
Q ss_pred Hc----ccccccccccccccc----------ccCCeEEEeeecccCC---CceeEEEEccchhhhcccchhHHHHHHhhc
Q 003593 340 AL----GVYCSLLTGQEKKLV----------PFSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (808)
Q Consensus 340 ~~----g~~~~l~~g~~~~~~----------~~~~~i~~t~e~l~~~---~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l 402 (808)
++ |+.+.+++|...... ....++++|+..+... ..++++||||+|++. ...+..+...
T Consensus 332 ~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg-----~~qr~~l~~~ 406 (681)
T PRK10917 332 KLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFG-----VEQRLALREK 406 (681)
T ss_pred HHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhh-----HHHHHHHHhc
Confidence 76 567788888764211 1245667787666532 238999999999964 3444455443
Q ss_pred cccceec--cCCchHHHHHHHHhhhcC----------CCcEEEEeeecchhhhhHHHHHHHHhh-cCCC-CEEEEech--
Q 003593 403 MADEIHL--CGDPSVLDVVRKICSETG----------DELHEQHYERFKPLVVEAKTLLGDLRN-VRSG-DCVVAFSR-- 466 (808)
Q Consensus 403 ~~~~i~l--~~s~~~~~~i~~l~~~~~----------~~~~~~~~~r~~~~~~~~~~ll~~l~~-~~~g-~~II~fsr-- 466 (808)
......+ .++|....+......... ...+...+... .....++..+.. ...+ .++|||+.
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~~~~~i~~~~~~g~q~~v~~~~ie 482 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPD----SRRDEVYERIREEIAKGRQAYVVCPLIE 482 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCc----ccHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 3222333 344322222111111000 01111111110 011233333322 2333 45555532
Q ss_pred -------hHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc
Q 003593 467 -------REIFEVKMAIEKHT-NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK 537 (808)
Q Consensus 467 -------k~~~~l~~~L~~~~-g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K 537 (808)
..+..++..|.+.. +.++..+||+|++++|..++++|++ |+.+|||||+++++|||+| +++||++++++
T Consensus 483 ~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 483 ESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA--GEIDILVATTVIEVGVDVPNATVMVIENAER 560 (681)
T ss_pred cccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECcceeeCcccCCCcEEEEeCCCC
Confidence 34566777776643 4789999999999999999999975 9999999999999999998 99999999832
Q ss_pred CCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
...+.|.||+||+||.|. .|.|++++.
T Consensus 561 --------~gls~lhQ~~GRvGR~g~---~g~~ill~~ 587 (681)
T PRK10917 561 --------FGLAQLHQLRGRVGRGAA---QSYCVLLYK 587 (681)
T ss_pred --------CCHHHHHHHhhcccCCCC---ceEEEEEEC
Confidence 257899999999999998 899999995
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.6e-29 Score=281.55 Aligned_cols=266 Identities=17% Similarity=0.194 Sum_probs=178.0
Q ss_pred eEEEEecCCCcHHHHHHHHHHh------cCcEEEEcccHHHHHHHHHHHHHc-ccccccccccccc--------------
Q 003593 296 IIYHCGPTNSGKTYNALQRFME------AKKGIYCSPLRLLAMEVFDKVNAL-GVYCSLLTGQEKK-------------- 354 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~~L~~------~~~~lvl~Ptr~La~Qi~~~l~~~-g~~~~l~~g~~~~-------------- 354 (808)
+++++||||||||++++.+++. .++++|++|+++|+.|+++++..+ |...++++|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999997666552 358899999999999999999986 6555443332110
Q ss_pred ----------ccccCCeEEEeeeccc----C--CC--------ceeEEEEccchhhhcccchhHHHHHHhhccc-cceec
Q 003593 355 ----------LVPFSNHIACTVEMVS----T--DE--------MYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHL 409 (808)
Q Consensus 355 ----------~~~~~~~i~~t~e~l~----~--~~--------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~-~~i~l 409 (808)
.....+.+++|++.+. . .. ..+++||||||++.+.+++. +...+..+.. ....+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0112445677775531 1 10 03789999999999876665 4444444432 23445
Q ss_pred cCCchHHHHHHHHhhhcCCCcE-------------EEEeeecchh-hhhHHHHHHHHhhc-CCCCEEEEe-chhHHHHHH
Q 003593 410 CGDPSVLDVVRKICSETGDELH-------------EQHYERFKPL-VVEAKTLLGDLRNV-RSGDCVVAF-SRREIFEVK 473 (808)
Q Consensus 410 ~~s~~~~~~i~~l~~~~~~~~~-------------~~~~~r~~~~-~~~~~~ll~~l~~~-~~g~~II~f-srk~~~~l~ 473 (808)
+.++|..+.+..+......... .+.+...... ......+...+... ..++++||+ +++.+..++
T Consensus 160 ~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~ 239 (358)
T TIGR01587 160 LMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFY 239 (358)
T ss_pred EEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHH
Confidence 6677766665555443221100 1111000000 01111222223222 345677777 568899999
Q ss_pred HHHHHhcCC--eEEEEcCCCCHHHHHHH----HHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCC
Q 003593 474 MAIEKHTNH--HCCVIYGALPPETRRQQ----ANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVP 547 (808)
Q Consensus 474 ~~L~~~~g~--~v~~lhg~l~~~~R~~~----~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s 547 (808)
..|.+. +. .+..+||++++.+|.++ ++.|++ ++..|||||+++++|||+|+++||++.. +
T Consensus 240 ~~L~~~-~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~ilvaT~~~~~GiDi~~~~vi~~~~-----------~ 305 (358)
T TIGR01587 240 QQLKEN-APEEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFVIVATQVIEASLDISADVMITELA-----------P 305 (358)
T ss_pred HHHHhh-cCCCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeEEEECcchhceeccCCCEEEEcCC-----------C
Confidence 999775 43 69999999999999774 889964 9999999999999999999999999865 5
Q ss_pred HhHHHHHhCccCCCCCCC-CceEEEEEecC
Q 003593 548 GSQVKQIAGRAGRRGSIY-PDGLTTTLNLD 576 (808)
Q Consensus 548 ~~~y~Qr~GRAGR~G~~~-~~G~~i~l~~~ 576 (808)
+++|+||+||+||.|+.. +.|.++.|...
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 789999999999998732 24588888754
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=2.2e-29 Score=298.85 Aligned_cols=282 Identities=16% Similarity=0.220 Sum_probs=189.1
Q ss_pred HHHHHHHCCCCCCcchh--hhHHHhCC------CeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHH
Q 003593 270 FRAMIESADLTKPHTWF--PFARVMKR------KIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDK 337 (808)
Q Consensus 270 i~~~l~~~g~~~pt~~~--~i~~~l~g------rdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~ 337 (808)
+.+.++.++| .||+.| +++.++.+ .+.+++||||||||++++.+++ .+.+++|++||++||.|+++.
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~ 303 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNS 303 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHH
Confidence 3456778999 688875 55555554 2589999999999999655543 466899999999999999999
Q ss_pred HHHc----ccccccccccccccc----------ccCCeEEEeeecccCC---CceeEEEEccchhhhcccchhHHHHHHh
Q 003593 338 VNAL----GVYCSLLTGQEKKLV----------PFSNHIACTVEMVSTD---EMYDVAVIDEIQMMSDACRGYAWTRALL 400 (808)
Q Consensus 338 l~~~----g~~~~l~~g~~~~~~----------~~~~~i~~t~e~l~~~---~lv~~vVIDEAh~i~d~~~g~~~~~~l~ 400 (808)
++++ |+.+.+++|...... ....++++|+..+... ..++++||||+|++.. ..+..+.
T Consensus 304 ~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~-----~qr~~l~ 378 (630)
T TIGR00643 304 LRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGV-----EQRKKLR 378 (630)
T ss_pred HHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccH-----HHHHHHH
Confidence 9875 577778887654321 1235677787666432 2389999999999654 3333333
Q ss_pred hcc-----ccceeccCCchHHHHHHHHhhhcC----------CCcEEEEeeecchhhhhHHHHHHHHhh-cCCC-CEEEE
Q 003593 401 GLM-----ADEIHLCGDPSVLDVVRKICSETG----------DELHEQHYERFKPLVVEAKTLLGDLRN-VRSG-DCVVA 463 (808)
Q Consensus 401 ~l~-----~~~i~l~~s~~~~~~i~~l~~~~~----------~~~~~~~~~r~~~~~~~~~~ll~~l~~-~~~g-~~II~ 463 (808)
... ...+.+.++|....+......... ...+...+.... ....++..+.+ ...+ .++||
T Consensus 379 ~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~----~~~~~~~~i~~~l~~g~q~~v~ 454 (630)
T TIGR00643 379 EKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHD----EKDIVYEFIEEEIAKGRQAYVV 454 (630)
T ss_pred HhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcc----hHHHHHHHHHHHHHhCCcEEEE
Confidence 222 222233334322211111111000 011111111110 11234444432 2233 45555
Q ss_pred ech---------hHHHHHHHHHHHh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEE
Q 003593 464 FSR---------REIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVF 532 (808)
Q Consensus 464 fsr---------k~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~ 532 (808)
+.. +.+..++..|.+. .+..+..+||+|++++|..++++|++ |+.+|||||+++++|||+| +++||+
T Consensus 455 ~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GvDiP~v~~VIi 532 (630)
T TIGR00643 455 YPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE--GEVDILVATTVIEVGVDVPNATVMVI 532 (630)
T ss_pred EccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECceeecCcccCCCcEEEE
Confidence 532 3466677777653 36789999999999999999999965 9999999999999999998 999999
Q ss_pred eCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEe
Q 003593 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 533 ~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~ 574 (808)
++.++ .+.+.|.||+|||||.|. .|.|++++
T Consensus 533 ~~~~r--------~gls~lhQ~~GRvGR~g~---~g~~il~~ 563 (630)
T TIGR00643 533 EDAER--------FGLSQLHQLRGRVGRGDH---QSYCLLVY 563 (630)
T ss_pred eCCCc--------CCHHHHHHHhhhcccCCC---CcEEEEEE
Confidence 99832 268899999999999998 89999998
No 58
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=8.7e-30 Score=302.95 Aligned_cols=280 Identities=27% Similarity=0.374 Sum_probs=205.9
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH----h-cCcEEEEcccHHHHHHHHHHHH---Hccccccccccccccc---cccCC
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM----E-AKKGIYCSPLRLLAMEVFDKVN---ALGVYCSLLTGQEKKL---VPFSN 360 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~----~-~~~~lvl~Ptr~La~Qi~~~l~---~~g~~~~l~~g~~~~~---~~~~~ 360 (808)
..++|+++++|||||||+.++.++. + ++++|||+|+|+||.|++++++ .+|+.+...||+.... .....
T Consensus 45 ~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ 124 (766)
T COG1204 45 LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYD 124 (766)
T ss_pred cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCC
Confidence 5589999999999999999655544 4 4699999999999999999998 7799999999987633 35667
Q ss_pred eEEEeeecccCC--------CceeEEEEccchhhhcccchhHHHHHHhhccccc--eeccCCchHHHHHHHHhhhcCCCc
Q 003593 361 HIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE--IHLCGDPSVLDVVRKICSETGDEL 430 (808)
Q Consensus 361 ~i~~t~e~l~~~--------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~--i~l~~s~~~~~~i~~l~~~~~~~~ 430 (808)
++++|+|.+... ..+++|||||+|.+.|..+|+....++..+.... +.+.+-.........++.+.+.+.
T Consensus 125 ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~ 204 (766)
T COG1204 125 VIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKL 204 (766)
T ss_pred EEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcc
Confidence 888999877532 1289999999999999989999887776665432 344432222233333444444332
Q ss_pred EEEEe----------------ee---cc--hhhhhHHHHHHHHhhcCCCCE-EEEe-chhHHHHHHHHHHHh--------
Q 003593 431 HEQHY----------------ER---FK--PLVVEAKTLLGDLRNVRSGDC-VVAF-SRREIFEVKMAIEKH-------- 479 (808)
Q Consensus 431 ~~~~~----------------~r---~~--~~~~~~~~ll~~l~~~~~g~~-II~f-srk~~~~l~~~L~~~-------- 479 (808)
+...+ .. .. +.......+...+.....+.. +||+ ||+.+...+..+.+.
T Consensus 205 ~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~ 284 (766)
T COG1204 205 VESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDD 284 (766)
T ss_pred cccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChh
Confidence 21111 00 00 111112222233344455544 4444 688888877777621
Q ss_pred ----------------------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEE
Q 003593 480 ----------------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVV 531 (808)
Q Consensus 480 ----------------------------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI 531 (808)
....++.+|+||+.++|..+.+.|++ |.++|||||..++.|+|+|.++||
T Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~--g~ikVlv~TpTLA~GVNLPA~~VI 362 (766)
T COG1204 285 EKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK--GKIKVLVSTPTLAAGVNLPARTVI 362 (766)
T ss_pred hhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc--CCceEEEechHHhhhcCCcceEEE
Confidence 12357889999999999999999976 999999999999999999999999
Q ss_pred EeCCccCC-CCccccCCHhHHHHHhCccCCCCCCCCceEEEEEe
Q 003593 532 FYSLSKYN-GDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 532 ~~~~~K~d-g~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~ 574 (808)
..|...|+ ..+.++.++-+|+|++|||||.|- ++.|.++.+.
T Consensus 363 Ik~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~-d~~G~~~i~~ 405 (766)
T COG1204 363 IKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY-DDYGEAIILA 405 (766)
T ss_pred EeeeEEEcCCCCeEECchhhHhhccCcCCCCCc-CCCCcEEEEe
Confidence 99999998 334899999999999999999996 4578887777
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=4.6e-29 Score=294.75 Aligned_cols=268 Identities=18% Similarity=0.152 Sum_probs=180.2
Q ss_pred CCCCCCcchh--hhHHHhCCC-eEEEEecCCCcHHHHHHHHHH---h---cCcEE-EEcccHHHHHHHHHHHHHccccc-
Q 003593 277 ADLTKPHTWF--PFARVMKRK-IIYHCGPTNSGKTYNALQRFM---E---AKKGI-YCSPLRLLAMEVFDKVNALGVYC- 345 (808)
Q Consensus 277 ~g~~~pt~~~--~i~~~l~gr-dvlv~apTGSGKTl~~L~~L~---~---~~~~l-vl~Ptr~La~Qi~~~l~~~g~~~- 345 (808)
.||. |+||| .++.++.|+ ++++.+|||||||.++..+++ . .++.| +++|||+||.|+++.+.+++...
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 6998 99986 777889998 577789999999996443332 1 23444 57799999999999998876422
Q ss_pred --------------------------cccccc-cccc----cc-cCCeEEEeeecccCCCc-------------------
Q 003593 346 --------------------------SLLTGQ-EKKL----VP-FSNHIACTVEMVSTDEM------------------- 374 (808)
Q Consensus 346 --------------------------~l~~g~-~~~~----~~-~~~~i~~t~e~l~~~~l------------------- 374 (808)
..+.|. .... .+ ...++++|++++....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 222333 2211 11 23456778766644332
Q ss_pred -eeEEEEccchhhhcccchhHHHHHHhhc--ccc---ceeccCCchHHHHHHHHhhhcC-CC-------------cEEEE
Q 003593 375 -YDVAVIDEIQMMSDACRGYAWTRALLGL--MAD---EIHLCGDPSVLDVVRKICSETG-DE-------------LHEQH 434 (808)
Q Consensus 375 -v~~vVIDEAh~i~d~~~g~~~~~~l~~l--~~~---~i~l~~s~~~~~~i~~l~~~~~-~~-------------~~~~~ 434 (808)
+.++|||||| ++++|..++..++..+ +.. .+.+++|+|....+..+..... .. .+.+.
T Consensus 171 ~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 171 QDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred cceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 7899999999 6788999999888864 332 4677777765432222221111 01 11111
Q ss_pred eeecchhhhhHHHHHHH---HhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH-----HHHHHHhc
Q 003593 435 YERFKPLVVEAKTLLGD---LRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRR-----QQANLFND 505 (808)
Q Consensus 435 ~~r~~~~~~~~~~ll~~---l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~-----~~~~~F~~ 505 (808)
+. . +.......++.. +.....+.+|||+ +++.+..++..|.+. ++ ..+||+|++.+|. +++++|+.
T Consensus 249 v~-v-~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-g~--~lLHG~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 249 VP-P-SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-KF--ELLTGTLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred Ee-c-ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-CC--eEeeCCCCHHHHhhHHHHHHHHHHhc
Confidence 11 0 000011112211 2223445677777 568999999999865 54 8999999999999 88999963
Q ss_pred C--CC-------CeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCC
Q 003593 506 Q--DN-------EFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (808)
Q Consensus 506 ~--~g-------~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (808)
. .+ ...|||||+++++||||+.++||++.. | .++|+||+||+||.|.
T Consensus 324 ~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~a---------P--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 324 QMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLA---------P--FESMQQRFGRVNRFGE 379 (844)
T ss_pred cccccccccccccceEEeccchhhhcccCCcceEEECCC---------C--HHHHHHHhcccCCCCC
Confidence 0 02 268999999999999999899999766 4 6999999999999998
No 60
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=4.5e-28 Score=284.94 Aligned_cols=362 Identities=19% Similarity=0.209 Sum_probs=239.4
Q ss_pred HHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----hc--------CcEEEEcccHHHHHHHH
Q 003593 270 FRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----EA--------KKGIYCSPLRLLAMEVF 335 (808)
Q Consensus 270 i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~~--------~~~lvl~Ptr~La~Qi~ 335 (808)
+++.++.. |..||+.| +++.+.+|++++++||||||||++++.+++ .. -.+|||+|+|+|..++.
T Consensus 12 v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 12 VREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 34566666 99999964 889999999999999999999999544433 22 15799999999999999
Q ss_pred HHHHH----cccccccccccccccc-----ccCC-eEEEeeecc----cCCCc------eeEEEEccchhhhcccchhHH
Q 003593 336 DKVNA----LGVYCSLLTGQEKKLV-----PFSN-HIACTVEMV----STDEM------YDVAVIDEIQMMSDACRGYAW 395 (808)
Q Consensus 336 ~~l~~----~g~~~~l~~g~~~~~~-----~~~~-~i~~t~e~l----~~~~l------v~~vVIDEAh~i~d~~~g~~~ 395 (808)
.++.. +|+.+.+.+|+..... ...+ ++++|||.+ +..+. +.++||||+|.+.+..+|..+
T Consensus 91 ~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 91 RRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred HHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhh
Confidence 99865 4788888898875432 2334 456777644 33222 899999999999999999998
Q ss_pred HHHHhhcc-----ccceeccCCchHHHHHHHHhhhcC--CCcEEEEeee------cchhhh------hH----HHHHHHH
Q 003593 396 TRALLGLM-----ADEIHLCGDPSVLDVVRKICSETG--DELHEQHYER------FKPLVV------EA----KTLLGDL 452 (808)
Q Consensus 396 ~~~l~~l~-----~~~i~l~~s~~~~~~i~~l~~~~~--~~~~~~~~~r------~~~~~~------~~----~~ll~~l 452 (808)
.-.+..|. ..++-+-++-.-...+.+++.... ..++.-.+.+ ..|... .. +.+.+.+
T Consensus 171 sl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v 250 (814)
T COG1201 171 ALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELV 250 (814)
T ss_pred hhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHH
Confidence 75553332 223333232222333344433332 1121111111 111000 11 2333333
Q ss_pred hhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEE
Q 003593 453 RNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRV 530 (808)
Q Consensus 453 ~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~V 530 (808)
+++. .++||. ||..++.++..|.+..+..+..+||+++.+.|..+.++|++ |+.+++|||..++.|||+. |+.|
T Consensus 251 ~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~--G~lravV~TSSLELGIDiG~vdlV 326 (814)
T COG1201 251 KKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE--GELKAVVATSSLELGIDIGDIDLV 326 (814)
T ss_pred hhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc--CCceEEEEccchhhccccCCceEE
Confidence 3332 455555 78999999999998766899999999999999999999965 9999999999999999995 9999
Q ss_pred EEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHH----HHHHhcCCch--hhHHhCCCCcHHHH
Q 003593 531 VFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY----LIECLKQPFE--VVKKVGLFPFFEQV 604 (808)
Q Consensus 531 I~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~----l~~~l~~~~~--~~~~~~~~~~~~~~ 604 (808)
||++. |.++....||+||+|+.-...+.|..+.....|... ...++....+ ++.+.++.....++
T Consensus 327 Iq~~S---------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~i 397 (814)
T COG1201 327 IQLGS---------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQI 397 (814)
T ss_pred EEeCC---------cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHH
Confidence 99999 999999999999999976544566666654222211 1122222222 22233333445555
Q ss_pred HHHHhhcccccHHHHHHHHHhhcccCCCcccCCcchHHHHHHHHHH
Q 003593 605 ELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEK 650 (808)
Q Consensus 605 ~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~l~~ 650 (808)
...+-.. .....++.+..... ..|..-..++...+++.|..
T Consensus 398 vg~~~~~-~~~~~~~y~~vrra----ypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 398 VGMALEK-VWEVEEAYRVVRRA----YPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHhhC-cCCHHHHHHHHHhc----cccccCCHHHHHHHHHHHhh
Confidence 5555443 34444544444433 23444556777788888877
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=2e-28 Score=304.18 Aligned_cols=332 Identities=16% Similarity=0.168 Sum_probs=207.8
Q ss_pred EEecCCCcHHHHHHHHH----Hh-------------cCcEEEEcccHHHHHHHHHHHHH----------------ccccc
Q 003593 299 HCGPTNSGKTYNALQRF----ME-------------AKKGIYCSPLRLLAMEVFDKVNA----------------LGVYC 345 (808)
Q Consensus 299 v~apTGSGKTl~~L~~L----~~-------------~~~~lvl~Ptr~La~Qi~~~l~~----------------~g~~~ 345 (808)
++||||||||++++.++ +. +.++|||+||++|+.|+++.++. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999954433 21 24689999999999999998863 24566
Q ss_pred ccccccccccc------ccCCeEEEeeecc----cCC-----CceeEEEEccchhhhcccchhHHHHHHhhc----cccc
Q 003593 346 SLLTGQEKKLV------PFSNHIACTVEMV----STD-----EMYDVAVIDEIQMMSDACRGYAWTRALLGL----MADE 406 (808)
Q Consensus 346 ~l~~g~~~~~~------~~~~~i~~t~e~l----~~~-----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l----~~~~ 406 (808)
..++|+..... ....++++||+.+ +.. +.+++|||||+|++.+..||..+...+..| +...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 67788754322 1345677888654 221 128999999999999888888766544332 3344
Q ss_pred eeccCCchHHHHHHHHhhhcCC--Cc-EE----------EEeeecchh---h--------------h-h-HHHHH-HHHh
Q 003593 407 IHLCGDPSVLDVVRKICSETGD--EL-HE----------QHYERFKPL---V--------------V-E-AKTLL-GDLR 453 (808)
Q Consensus 407 i~l~~s~~~~~~i~~l~~~~~~--~~-~~----------~~~~r~~~~---~--------------~-~-~~~ll-~~l~ 453 (808)
+.+..|+|+.+. +.++...+. .. ++ ..+...... . . . ...+. ..+.
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~ 239 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILD 239 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHH
Confidence 555556655432 223332211 11 10 000000000 0 0 0 00111 1121
Q ss_pred hc-CCCCEEEEe-chhHHHHHHHHHHHhcC--------------------------------CeEEEEcCCCCHHHHHHH
Q 003593 454 NV-RSGDCVVAF-SRREIFEVKMAIEKHTN--------------------------------HHCCVIYGALPPETRRQQ 499 (808)
Q Consensus 454 ~~-~~g~~II~f-srk~~~~l~~~L~~~~g--------------------------------~~v~~lhg~l~~~~R~~~ 499 (808)
.. ...++|||+ ||+.|+.++..|.+... ..+.+|||+|++++|..+
T Consensus 240 ~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~I 319 (1490)
T PRK09751 240 EVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAIT 319 (1490)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHH
Confidence 11 234566666 57889999988875311 226789999999999999
Q ss_pred HHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCH
Q 003593 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL 578 (808)
Q Consensus 500 ~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~ 578 (808)
++.|++ |+++|||||+++++||||+ |++||+++. |.++.+|+||+|||||.... .+.++.+.....
T Consensus 320 E~~fK~--G~LrvLVATssLELGIDIg~VDlVIq~gs---------P~sVas~LQRiGRAGR~~gg--~s~gli~p~~r~ 386 (1490)
T PRK09751 320 EQALKS--GELRCVVATSSLELGIDMGAVDLVIQVAT---------PLSVASGLQRIGRAGHQVGG--VSKGLFFPRTRR 386 (1490)
T ss_pred HHHHHh--CCceEEEeCcHHHccCCcccCCEEEEeCC---------CCCHHHHHHHhCCCCCCCCC--ccEEEEEeCcHH
Confidence 999965 9999999999999999997 999999999 99999999999999996331 455554433322
Q ss_pred HH------HHHHhcCCchhhHHhCCCC---cHHHHHHHHhhcccccHHHHHHHHHhhcccCCCcccCCcchHHHHHHHHH
Q 003593 579 DY------LIECLKQPFEVVKKVGLFP---FFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLE 649 (808)
Q Consensus 579 ~~------l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~l~ 649 (808)
.. +..++...++++. ....| ...++...+.. ......++.+.+... ..|.....++...+.++|.
T Consensus 387 dlle~~~~ve~~l~g~iE~~~-~p~nplDVLaqqiva~a~~-~~~~~d~l~~~vrra----~pf~~L~~~~f~~vl~~L~ 460 (1490)
T PRK09751 387 DLVDSAVIVECMFAGRLENLT-PPHNPLDVLAQQTVAAAAM-DALQVDEWYSRVRRA----APWKDLPRRVFDATLDMLS 460 (1490)
T ss_pred HHHhhHHHHHHHhcCCCCccC-CCCChHHHHHHHHHHHHhc-CCCCHHHHHHHhhcc----CCcccCCHHHHHHHHHHHh
Confidence 21 2234444444432 11122 24555555554 456666666655543 3444555666777777776
Q ss_pred H
Q 003593 650 K 650 (808)
Q Consensus 650 ~ 650 (808)
.
T Consensus 461 ~ 461 (1490)
T PRK09751 461 G 461 (1490)
T ss_pred c
Confidence 4
No 62
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=7.1e-28 Score=294.44 Aligned_cols=300 Identities=18% Similarity=0.205 Sum_probs=184.6
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHhcC---c-EEEEc-ccH----HHHHHHHHHHHH-ccccccccccccccccccCCe
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFMEAK---K-GIYCS-PLR----LLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSNH 361 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~~~---~-~lvl~-Ptr----~La~Qi~~~l~~-~g~~~~l~~g~~~~~~~~~~~ 361 (808)
..++.++++|+||||||++..+.++..+ . .|+++ |.| +||.++.+++.. +|..+++.+.-+........+
T Consensus 87 ~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~s~~t~I 166 (1294)
T PRK11131 87 RDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMV 166 (1294)
T ss_pred HhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccccCCCCCE
Confidence 5677888899999999997554555433 2 24444 865 555555555543 344443322211111223456
Q ss_pred EEEeeeccc-----CC--CceeEEEEccchh-hhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcE--
Q 003593 362 IACTVEMVS-----TD--EMYDVAVIDEIQM-MSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELH-- 431 (808)
Q Consensus 362 i~~t~e~l~-----~~--~lv~~vVIDEAh~-i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~-- 431 (808)
+++|+.++- .. ..+++|||||||+ +++.+|...+-..++...+....+++|+|+.. ..+........+
T Consensus 167 ~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~--e~fs~~F~~apvI~ 244 (1294)
T PRK11131 167 KLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDP--ERFSRHFNNAPIIE 244 (1294)
T ss_pred EEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCH--HHHHHHcCCCCEEE
Confidence 677764431 11 2289999999995 67776654322222222233445566666421 223332221111
Q ss_pred --------EEEeeecchhhh--hH---HHHHH---HHhhcCCCCEEEEec-hhHHHHHHHHHHHhcCC---eEEEEcCCC
Q 003593 432 --------EQHYERFKPLVV--EA---KTLLG---DLRNVRSGDCVVAFS-RREIFEVKMAIEKHTNH---HCCVIYGAL 491 (808)
Q Consensus 432 --------~~~~~r~~~~~~--~~---~~ll~---~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g~---~v~~lhg~l 491 (808)
...|........ +. ..++. .+....+|+++||++ ..++..++..|.+. +. .+.++||+|
T Consensus 245 V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~-~~~~~~VlpLhg~L 323 (1294)
T PRK11131 245 VSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKL-NLRHTEILPLYARL 323 (1294)
T ss_pred EcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhc-CCCcceEeecccCC
Confidence 112211100000 01 12222 223345678888884 68899999999864 44 478999999
Q ss_pred CHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHhCccCCC
Q 003593 492 PPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRR 561 (808)
Q Consensus 492 ~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~ 561 (808)
++++|.++++.+ |..+||||||++++||||| |++||++|..| ||.. ...|.|.++|.||+|||||.
T Consensus 324 s~~eQ~~Vf~~~----g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 324 SNSEQNRVFQSH----SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CHHHHHHHhccc----CCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 999999987753 7899999999999999998 99999999754 5433 34578899999999999999
Q ss_pred CCCCCceEEEEEecCCHHHHHHHhcCCchhhHHhCCCCcHHHH
Q 003593 562 GSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQV 604 (808)
Q Consensus 562 G~~~~~G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~ 604 (808)
+. |.||.||+++.. ..+-....+++.+..+.....+|
T Consensus 400 ~~----G~c~rLyte~d~--~~~~~~~~PEIlR~~L~~viL~l 436 (1294)
T PRK11131 400 SE----GICIRLYSEDDF--LSRPEFTDPEILRTNLASVILQM 436 (1294)
T ss_pred CC----cEEEEeCCHHHH--HhhhcccCCccccCCHHHHHHHH
Confidence 65 999999986532 33334456666665543333333
No 63
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=9.2e-28 Score=303.08 Aligned_cols=301 Identities=14% Similarity=0.150 Sum_probs=200.4
Q ss_pred HHHHHHHHHHH-CCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHH-HHHHH---hcCcEEEEcccHHHHHHHHHHH
Q 003593 266 EIKRFRAMIES-ADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNA-LQRFM---EAKKGIYCSPLRLLAMEVFDKV 338 (808)
Q Consensus 266 ~l~~i~~~l~~-~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~-L~~L~---~~~~~lvl~Ptr~La~Qi~~~l 338 (808)
.+..+.+.++. .|| .|+++| .++++++|+|++++||||||||+++ +.++. .++++|||+|||+||.|+++.+
T Consensus 64 ~~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 64 EVEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHH
Confidence 44455566665 899 699975 7788999999999999999999973 33332 3458999999999999999999
Q ss_pred HHccc------ccccccccccccc----------ccCCeEEEeeecccCC------CceeEEEEccchhhhc--------
Q 003593 339 NALGV------YCSLLTGQEKKLV----------PFSNHIACTVEMVSTD------EMYDVAVIDEIQMMSD-------- 388 (808)
Q Consensus 339 ~~~g~------~~~l~~g~~~~~~----------~~~~~i~~t~e~l~~~------~lv~~vVIDEAh~i~d-------- 388 (808)
+.++. .+..++|...... ....++++|+..+... ..++++||||||+|++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchh
Confidence 98643 3334445432211 1245677888766432 2389999999999986
Q ss_pred ---ccchhHHHH----HHh----------------------hccccce-eccCCchHH--HHHHHHhhhcC---------
Q 003593 389 ---ACRGYAWTR----ALL----------------------GLMADEI-HLCGDPSVL--DVVRKICSETG--------- 427 (808)
Q Consensus 389 ---~~~g~~~~~----~l~----------------------~l~~~~i-~l~~s~~~~--~~i~~l~~~~~--------- 427 (808)
+||.++... ++. .++...+ .+++++|.. ..+..+.....
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~ 302 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRS 302 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCC
Confidence 466666653 211 1222333 455666543 22222322110
Q ss_pred -CCcEEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEe-chhH---HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q 003593 428 -DELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SRRE---IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANL 502 (808)
Q Consensus 428 -~~~~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f-srk~---~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~ 502 (808)
...+.+.|...... ....++..+.... ...|||+ +++. +++++..|.+. |+++..+||+ |..++++
T Consensus 303 ~lr~i~~~yi~~~~~--~k~~L~~ll~~~g-~~gIVF~~t~~~~e~ae~la~~L~~~-Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 303 ALRNIVDVYLNPEKI--IKEHVRELLKKLG-KGGLIFVPIDEGAEKAEEIEKYLLED-GFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCcEEEEEECCHH--HHHHHHHHHHhCC-CCeEEEEeccccchHHHHHHHHHHHC-CCeEEEecch-----HHHHHHH
Confidence 11223333211111 1235666665553 3456666 4443 58999999875 9999999995 8999999
Q ss_pred HhcCCCCeeEEEEC----CCCccccccC--ccEEEEeCCccCCCCccccCCHhHHHHHh-------------CccCCCCC
Q 003593 503 FNDQDNEFDVLVAS----DAVGMGLNLN--IRRVVFYSLSKYNGDKIIPVPGSQVKQIA-------------GRAGRRGS 563 (808)
Q Consensus 503 F~~~~g~~~ILVAT----da~~~GIDip--V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~-------------GRAGR~G~ 563 (808)
|++ |+++||||| ++++||||+| |++|||+|+|||. .+++.|+|.. |||||.|.
T Consensus 374 F~~--G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~------~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 374 FEE--GEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFR------FRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred HHc--CCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCC------cchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 975 999999999 5889999997 9999999995531 2777777766 99999998
Q ss_pred CCCceEEEEEe-cCCHHHHHHHhcC
Q 003593 564 IYPDGLTTTLN-LDDLDYLIECLKQ 587 (808)
Q Consensus 564 ~~~~G~~i~l~-~~d~~~l~~~l~~ 587 (808)
.+.++..+ ..+...+.+++.+
T Consensus 446 ---~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 446 ---PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred ---cchhHHHhHHHHHHHHHHHhcc
Confidence 66665443 3444555555544
No 64
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.6e-27 Score=267.69 Aligned_cols=302 Identities=23% Similarity=0.276 Sum_probs=210.1
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHhcC----cEEEEc-ccHHHHHHHHHHHHHc-cccccccccccccccc----cCCe
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFMEAK----KGIYCS-PLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLVP----FSNH 361 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~~~----~~lvl~-Ptr~La~Qi~~~l~~~-g~~~~l~~g~~~~~~~----~~~~ 361 (808)
-.++.+|++|+||||||++..+.|.++| ..|.|+ |+|.-|..+++++... |...+-.+|..++-.. ...+
T Consensus 64 e~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Tri 143 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRI 143 (674)
T ss_pred HHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeE
Confidence 6788999999999999999999998765 225555 9999999999999753 5555555555544322 2223
Q ss_pred EEEee-----ecccCCCc--eeEEEEccchhhhcccchhHHHHHHhhccccce-------eccCCchHH--HHHHHHhh-
Q 003593 362 IACTV-----EMVSTDEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMADEI-------HLCGDPSVL--DVVRKICS- 424 (808)
Q Consensus 362 i~~t~-----e~l~~~~l--v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i-------~l~~s~~~~--~~i~~l~~- 424 (808)
.+.|- +++..+.+ +++|||||||..+ ..+.+++++....+ .+..+++.. ....-+..
T Consensus 144 kymTDG~LLRE~l~Dp~LskYsvIIlDEAHERs------l~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a 217 (674)
T KOG0922|consen 144 KYMTDGMLLREILKDPLLSKYSVIILDEAHERS------LHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNA 217 (674)
T ss_pred EEecchHHHHHHhcCCccccccEEEEechhhhh------hHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCC
Confidence 34443 23322222 9999999999987 44667766644311 123344322 21111111
Q ss_pred ----hcCCCcEE-EEe-eecchhhhhH--HHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHHhcC---C----eEEEEc
Q 003593 425 ----ETGDELHE-QHY-ERFKPLVVEA--KTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHTN---H----HCCVIY 488 (808)
Q Consensus 425 ----~~~~~~~~-~~~-~r~~~~~~~~--~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g---~----~v~~lh 488 (808)
..+...-+ ..| ......+++. ..++++.....+|+++||.| +.+++.++..|.+..+ . -+.++|
T Consensus 218 ~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply 297 (674)
T KOG0922|consen 218 PILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLY 297 (674)
T ss_pred ceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeec
Confidence 11111111 111 1112222222 45667777889999999997 6778877777765322 1 357899
Q ss_pred CCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHhCcc
Q 003593 489 GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRA 558 (808)
Q Consensus 489 g~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~GRA 558 (808)
|.||.+++.+++..- +.|..+|++|||+++..|.|| |++||+.+..| ||.. ...|.|.++..||+|||
T Consensus 298 ~aL~~e~Q~rvF~p~--p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRA 375 (674)
T KOG0922|consen 298 GALPSEEQSRVFDPA--PPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRA 375 (674)
T ss_pred ccCCHHHhhccccCC--CCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccC
Confidence 999999999998887 679999999999999999998 99999999875 6654 47899999999999999
Q ss_pred CCCCCCCCceEEEEEecCCHHHHHHHhcCCchhhHHhCCCCcHHHHHHH
Q 003593 559 GRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607 (808)
Q Consensus 559 GR~G~~~~~G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 607 (808)
||.|+ |.||.+|+++.- .++.....+++.+..+.....+|..+
T Consensus 376 GRt~p----GkcyRLYte~~~--~~~~~~~~PEI~R~~Ls~~vL~Lkal 418 (674)
T KOG0922|consen 376 GRTGP----GKCYRLYTESAY--DKMPLQTVPEIQRVNLSSAVLQLKAL 418 (674)
T ss_pred CCCCC----ceEEEeeeHHHH--hhcccCCCCceeeechHHHHHHHHhc
Confidence 99997 999999987643 67777888888887766555555553
No 65
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.95 E-value=6.4e-28 Score=264.06 Aligned_cols=301 Identities=23% Similarity=0.299 Sum_probs=217.2
Q ss_pred HHHHHHHHCCCCCCcchhhhH---HHhCCCeEEEEecCCCcHHHH----HHHHHHh-cCcEEEEcccHHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWFPFA---RVMKRKIIYHCGPTNSGKTYN----ALQRFME-AKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~~i~---~~l~grdvlv~apTGSGKTl~----~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
++.+.++..|++...|+|..+ -.+.|+|.+++.+|+||||+. -++.++. +++.||++|+.+||+|-++.++.
T Consensus 204 ~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 204 KFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred HHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHH
Confidence 556788899999999987443 358999999999999999998 3566665 77899999999999999998875
Q ss_pred ----ccccccccccccccc----------cccCCeEEEeee----cccCCCc---eeEEEEccchhhhcccchhHHHHHH
Q 003593 341 ----LGVYCSLLTGQEKKL----------VPFSNHIACTVE----MVSTDEM---YDVAVIDEIQMMSDACRGYAWTRAL 399 (808)
Q Consensus 341 ----~g~~~~l~~g~~~~~----------~~~~~~i~~t~e----~l~~~~l---v~~vVIDEAh~i~d~~~g~~~~~~l 399 (808)
+|..+.+..|..... .+.+.+++.|.+ ++..+.. +..|||||+|++-|..+|+-+.-.+
T Consensus 284 rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI 363 (830)
T COG1202 284 RYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLI 363 (830)
T ss_pred HhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHH
Confidence 466666655543321 234567788864 2333222 8999999999999988998876444
Q ss_pred hhc---cccceeccCCchHHHHHHHHhhhcCCCcEEEEeeecchhhh---------hHHHHHHHH---------hhcCCC
Q 003593 400 LGL---MADEIHLCGDPSVLDVVRKICSETGDELHEQHYERFKPLVV---------EAKTLLGDL---------RNVRSG 458 (808)
Q Consensus 400 ~~l---~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~~~~r~~~~~~---------~~~~ll~~l---------~~~~~g 458 (808)
..| .+..+.+--++++ ..-..++...+..++. +-.|+.|+.- ++..++..| .....|
T Consensus 364 ~RLr~l~~~AQ~i~LSATV-gNp~elA~~l~a~lV~-y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rG 441 (830)
T COG1202 364 GRLRYLFPGAQFIYLSATV-GNPEELAKKLGAKLVL-YDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRG 441 (830)
T ss_pred HHHHHhCCCCeEEEEEeec-CChHHHHHHhCCeeEe-ecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCC
Confidence 332 2222222222222 1112344444444432 2233333211 111222222 123456
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCcc
Q 003593 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSK 537 (808)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K 537 (808)
++|||. ||+.|..++..|... |+++.+||+|||..+|..+...|. ++++.++|+|-+++.|+|+|..-||+-.+.
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~k-G~~a~pYHaGL~y~eRk~vE~~F~--~q~l~~VVTTAAL~AGVDFPASQVIFEsLa- 517 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGK-GLKAAPYHAGLPYKERKSVERAFA--AQELAAVVTTAALAAGVDFPASQVIFESLA- 517 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcC-CcccccccCCCcHHHHHHHHHHHh--cCCcceEeehhhhhcCCCCchHHHHHHHHH-
Confidence 777776 799999999999876 999999999999999999999995 499999999999999999999999986641
Q ss_pred CCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHH
Q 003593 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLD 579 (808)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~ 579 (808)
.+..|.|+.+|.|+.|||||.+- +..|.+|++..+...
T Consensus 518 ---MG~~WLs~~EF~QM~GRAGRp~y-HdrGkVyllvepg~~ 555 (830)
T COG1202 518 ---MGIEWLSVREFQQMLGRAGRPDY-HDRGKVYLLVEPGKK 555 (830)
T ss_pred ---cccccCCHHHHHHHhcccCCCCc-ccCceEEEEecCChh
Confidence 23358999999999999999996 568999999865443
No 66
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=3.8e-27 Score=289.14 Aligned_cols=295 Identities=17% Similarity=0.206 Sum_probs=192.2
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHhcC---cE-EEEc-ccHHHHHHHHHHHHH-cccccccccccccccc----ccCCe
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFMEAK---KG-IYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLV----PFSNH 361 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~~~---~~-lvl~-Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~----~~~~~ 361 (808)
..++.+|++|+||||||+...+.+++.+ .+ |+++ |.|..|..++.++.+ +|..++-..|...+.. ....+
T Consensus 80 ~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~I 159 (1283)
T TIGR01967 80 AENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLV 159 (1283)
T ss_pred HhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccCCCcee
Confidence 4677889999999999998666666543 22 4433 999999999988875 4666666666543321 12334
Q ss_pred EEEeeeccc-----CC--CceeEEEEccchh-hhcccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhcCCCcEE-
Q 003593 362 IACTVEMVS-----TD--EMYDVAVIDEIQM-MSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSETGDELHE- 432 (808)
Q Consensus 362 i~~t~e~l~-----~~--~lv~~vVIDEAh~-i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~- 432 (808)
.++|..++. .. ..+++|||||||+ .++.++...+-..++...+....+++|+|... ..+....+...++
T Consensus 160 ~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~--~~fa~~F~~apvI~ 237 (1283)
T TIGR01967 160 KLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDP--ERFSRHFNNAPIIE 237 (1283)
T ss_pred eeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCH--HHHHHHhcCCCEEE
Confidence 566654432 11 1289999999995 77776665543333333333344555655421 2233322211111
Q ss_pred ---------EEeeecchhh----hh-HHHH---HHHHhhcCCCCEEEEec-hhHHHHHHHHHHHhc--CCeEEEEcCCCC
Q 003593 433 ---------QHYERFKPLV----VE-AKTL---LGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHT--NHHCCVIYGALP 492 (808)
Q Consensus 433 ---------~~~~r~~~~~----~~-~~~l---l~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~--g~~v~~lhg~l~ 492 (808)
..|....... .. ...+ +..+....+|+++||++ ..++..++..|.+.. +..+.++||+|+
T Consensus 238 V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls 317 (1283)
T TIGR01967 238 VSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLS 317 (1283)
T ss_pred ECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCC
Confidence 1111110000 00 0112 22233345688888884 688999999998642 356899999999
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHhCccCCCC
Q 003593 493 PETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRG 562 (808)
Q Consensus 493 ~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G 562 (808)
+++|.++++.+ +..+||||||++++||||| |++||++|+.| ||.. ...|.|.++|.||+|||||.|
T Consensus 318 ~~eQ~~vf~~~----~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~ 393 (1283)
T TIGR01967 318 NKEQQRVFQPH----SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA 393 (1283)
T ss_pred HHHHHHHhCCC----CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC
Confidence 99999986544 4579999999999999998 99999999765 5543 346889999999999999999
Q ss_pred CCCCceEEEEEecCCHHHHHHHhcCCchhhHHhCCC
Q 003593 563 SIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLF 598 (808)
Q Consensus 563 ~~~~~G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~ 598 (808)
. |.||.||+++.. ..+.....+++.+..+.
T Consensus 394 ~----G~cyRLyte~~~--~~~~~~~~PEIlR~~L~ 423 (1283)
T TIGR01967 394 P----GICIRLYSEEDF--NSRPEFTDPEILRTNLA 423 (1283)
T ss_pred C----ceEEEecCHHHH--HhhhhccCcccccccHH
Confidence 6 999999986533 23334456666655543
No 67
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.4e-26 Score=265.19 Aligned_cols=301 Identities=23% Similarity=0.274 Sum_probs=224.0
Q ss_pred hhhhHHHhCCCeEEEEecCCCcHHHH--HHHHHH--hcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCC
Q 003593 285 WFPFARVMKRKIIYHCGPTNSGKTYN--ALQRFM--EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN 360 (808)
Q Consensus 285 ~~~i~~~l~grdvlv~apTGSGKTl~--~L~~L~--~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~ 360 (808)
-+++....+|..|+|.|+|.+|||++ |..++. ..-++||.+|.++|-+|-+..++..-..++++||+.... +.+.
T Consensus 303 k~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvqin-PeAs 381 (1248)
T KOG0947|consen 303 KEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQIN-PEAS 381 (1248)
T ss_pred HHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeecceeeC-CCcc
Confidence 35777778999999999999999999 444444 345899999999999999999998766788999987653 5577
Q ss_pred eEEEeeecccCC--------CceeEEEEccchhhhcccchhHHHHHHhhccccceeccCCchH---HHHHHHHhhhcCCC
Q 003593 361 HIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV---LDVVRKICSETGDE 429 (808)
Q Consensus 361 ~i~~t~e~l~~~--------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~---~~~i~~l~~~~~~~ 429 (808)
+++.|.|+|... +.++.||+||+|.+.|..+|..|+.++..+|.....+|-++|+ .+....+.+.....
T Consensus 382 CLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~ 461 (1248)
T KOG0947|consen 382 CLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKT 461 (1248)
T ss_pred eEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCChHHHHHHhhhccCce
Confidence 788887766332 2389999999999999999999999999999876666655544 23333332221111
Q ss_pred cEEEE-eeecchhh------------------------------------------------------------------
Q 003593 430 LHEQH-YERFKPLV------------------------------------------------------------------ 442 (808)
Q Consensus 430 ~~~~~-~~r~~~~~------------------------------------------------------------------ 442 (808)
+.+.. ..|..|+.
T Consensus 462 IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r 541 (1248)
T KOG0947|consen 462 IYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSR 541 (1248)
T ss_pred EEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcc
Confidence 11100 01111100
Q ss_pred ------hhH--HHHHHHHhhcCC----CCEEEEechhHHHHHHHHHHHh-------------------------------
Q 003593 443 ------VEA--KTLLGDLRNVRS----GDCVVAFSRREIFEVKMAIEKH------------------------------- 479 (808)
Q Consensus 443 ------~~~--~~ll~~l~~~~~----g~~II~fsrk~~~~l~~~L~~~------------------------------- 479 (808)
... ..++..+..... .-+++||+++.|++.+..|...
T Consensus 542 ~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQ 621 (1248)
T KOG0947|consen 542 GSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQ 621 (1248)
T ss_pred cccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchH
Confidence 000 012222222221 1245566999999988877521
Q ss_pred -------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHH
Q 003593 480 -------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVK 552 (808)
Q Consensus 480 -------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~ 552 (808)
.-..++++|||+-|-.++-+.-.|. .|-++||+||..|+||+|.|.+.||+.++.|+||...+-..+.+|+
T Consensus 622 vl~m~~ll~RGiaVHH~GlLPivKE~VE~LFq--rGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEyt 699 (1248)
T KOG0947|consen 622 VLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQ--RGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYT 699 (1248)
T ss_pred HHHHHHHHhhcchhhcccchHHHHHHHHHHHh--cCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHH
Confidence 2246889999999999999999995 5999999999999999999999999999999999999999999999
Q ss_pred HHhCccCCCCCCCCceEEEEEec---CCHHHHHHHhcCCc
Q 003593 553 QIAGRAGRRGSIYPDGLTTTLNL---DDLDYLIECLKQPF 589 (808)
Q Consensus 553 Qr~GRAGR~G~~~~~G~~i~l~~---~d~~~l~~~l~~~~ 589 (808)
|++|||||.|. +..|+++.+.. ++...+++++-...
T Consensus 700 QMAGRAGRRGl-D~tGTVii~~~~~vp~~a~l~~li~G~~ 738 (1248)
T KOG0947|consen 700 QMAGRAGRRGL-DETGTVIIMCKDSVPSAATLKRLIMGGP 738 (1248)
T ss_pred hhhcccccccc-CcCceEEEEecCCCCCHHHHhhHhcCCC
Confidence 99999999997 67999999985 56777777775543
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=1.1e-25 Score=260.84 Aligned_cols=266 Identities=15% Similarity=0.190 Sum_probs=175.7
Q ss_pred CCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHH----HHhc-CcEEEEcccHHHHHHHHHHHHHcccc----c-cc
Q 003593 280 TKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQR----FMEA-KKGIYCSPLRLLAMEVFDKVNALGVY----C-SL 347 (808)
Q Consensus 280 ~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~----L~~~-~~~lvl~Ptr~La~Qi~~~l~~~g~~----~-~l 347 (808)
-.|+++| ++..++.+++.++++|||+|||+++... +... +++|||+||++|+.|+.+++++++.. + .+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 4566554 6777889999999999999999984321 1223 38999999999999999999987532 1 23
Q ss_pred cccccccccccCCeEEEeeecccCC-----CceeEEEEccchhhhcccchhHHHHHHhhcccc--ceeccCCchHHH---
Q 003593 348 LTGQEKKLVPFSNHIACTVEMVSTD-----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD--EIHLCGDPSVLD--- 417 (808)
Q Consensus 348 ~~g~~~~~~~~~~~i~~t~e~l~~~-----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~--~i~l~~s~~~~~--- 417 (808)
.+|.... ....++++|+..+... ..+++|||||||++... .+..++..++.. .+.++++|.-..
T Consensus 193 ~~g~~~~--~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~~~~~ 266 (501)
T PHA02558 193 YSGTAKD--TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDGKANI 266 (501)
T ss_pred ecCcccC--CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEeccCCCccccH
Confidence 3443222 2345677787554321 23899999999999854 456666666433 233444442110
Q ss_pred --H------------HHHHhhhc-CCCcEE-EEeeecchh---------h-------h----hHHHHHHHHhh--cCCCC
Q 003593 418 --V------------VRKICSET-GDELHE-QHYERFKPL---------V-------V----EAKTLLGDLRN--VRSGD 459 (808)
Q Consensus 418 --~------------i~~l~~~~-~~~~~~-~~~~r~~~~---------~-------~----~~~~ll~~l~~--~~~g~ 459 (808)
+ ...+.... ...... ....+..+. . . ....+...+.. ...+.
T Consensus 267 ~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~ 346 (501)
T PHA02558 267 LQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGEN 346 (501)
T ss_pred HHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCC
Confidence 0 01111110 000100 001111100 0 0 00112222211 22345
Q ss_pred EEEEec-hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEEC-CCCccccccC-ccEEEEeCCc
Q 003593 460 CVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS-DAVGMGLNLN-IRRVVFYSLS 536 (808)
Q Consensus 460 ~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVAT-da~~~GIDip-V~~VI~~~~~ 536 (808)
++|+|. .+.+..++..|.+. |.++..+||++++++|..+++.|++ |+..||||| +++++|+|+| +++||++.+
T Consensus 347 ~lV~~~~~~h~~~L~~~L~~~-g~~v~~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p- 422 (501)
T PHA02558 347 TFVMFKYVEHGKPLYEMLKKV-YDKVYYVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVFSTGISIKNLHHVIFAHP- 422 (501)
T ss_pred EEEEEEEHHHHHHHHHHHHHc-CCCEEEEeCCCCHHHHHHHHHHHhC--CCCeEEEEEcceeccccccccccEEEEecC-
Confidence 666664 56788888888774 9999999999999999999999964 888999998 8999999998 999999998
Q ss_pred cCCCCccccCCHhHHHHHhCccCCCCC
Q 003593 537 KYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (808)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (808)
+.|...|+||+||+||.+.
T Consensus 423 --------~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 423 --------SKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred --------CcchhhhhhhhhccccCCC
Confidence 7799999999999999987
No 69
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.2e-26 Score=252.43 Aligned_cols=294 Identities=23% Similarity=0.307 Sum_probs=203.5
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHHHhcCc----EEEEc-ccHHHHHHHHHHHHH-cccccccccccccccccc----CC
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKK----GIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPF----SN 360 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L~~~~~----~lvl~-Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~~~----~~ 360 (808)
+-.++.|+++|.||||||++..+.|++.|. .|.|+ |.|..|..++.++.. .|...+.-.|..++-... ..
T Consensus 368 ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~ 447 (1042)
T KOG0924|consen 368 IRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTK 447 (1042)
T ss_pred HhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCcee
Confidence 357889999999999999999999988763 35555 999999999999975 477776666665543221 11
Q ss_pred eEEEeeecc-----cCCC--ceeEEEEccchhhhcccchhHHHHHHhhcccc------ce-eccCCchHHHHHHHHhhhc
Q 003593 361 HIACTVEMV-----STDE--MYDVAVIDEIQMMSDACRGYAWTRALLGLMAD------EI-HLCGDPSVLDVVRKICSET 426 (808)
Q Consensus 361 ~i~~t~e~l-----~~~~--lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~------~i-~l~~s~~~~~~i~~l~~~~ 426 (808)
+-+.|-.+| .... .+++||+||||..+ ..+.++.|+... .+ .+..++++. +++++...
T Consensus 448 IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs------lNtDilfGllk~~larRrdlKliVtSATm~--a~kf~nfF 519 (1042)
T KOG0924|consen 448 IKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS------LNTDILFGLLKKVLARRRDLKLIVTSATMD--AQKFSNFF 519 (1042)
T ss_pred EEEeccchHHHHHhhhhhhhheeEEEechhhhcc------cchHHHHHHHHHHHHhhccceEEEeecccc--HHHHHHHh
Confidence 223333222 1111 18999999999986 234555554332 11 223344322 22334433
Q ss_pred CC---------CcEEEEeeecch--hhhh--HHHHHHHHhhcCCCCEEEEech-h----HHHHHHHHHHHh-----cCCe
Q 003593 427 GD---------ELHEQHYERFKP--LVVE--AKTLLGDLRNVRSGDCVVAFSR-R----EIFEVKMAIEKH-----TNHH 483 (808)
Q Consensus 427 ~~---------~~~~~~~~r~~~--~~~~--~~~ll~~l~~~~~g~~II~fsr-k----~~~~l~~~L~~~-----~g~~ 483 (808)
+. .+-+.......| .+++ .++.+.+.....+|+++||.+. . .+..+...|.+. .++.
T Consensus 520 gn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~ 599 (1042)
T KOG0924|consen 520 GNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLA 599 (1042)
T ss_pred CCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceE
Confidence 31 111111111111 1122 1344555566678999999973 3 344455555432 2678
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHH
Q 003593 484 CCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQ 553 (808)
Q Consensus 484 v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Q 553 (808)
+.++|+.||..-+.++++.- +.|..+|||||++++..|.|| |++||+.+..| ||.. ...|.|.++..|
T Consensus 600 vlpiYSQLp~dlQ~kiFq~a--~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~Q 677 (1042)
T KOG0924|consen 600 VLPIYSQLPADLQAKIFQKA--EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQ 677 (1042)
T ss_pred EEeehhhCchhhhhhhcccC--CCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchh
Confidence 99999999999999998887 569999999999999999998 99999999876 5433 678999999999
Q ss_pred HhCccCCCCCCCCceEEEEEecCCHHHHHHHhcCCchhhHHhCCCC
Q 003593 554 IAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFP 599 (808)
Q Consensus 554 r~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~ 599 (808)
|+|||||.|. |.||.+|+++ .+..+++..+.+++++..+..
T Consensus 678 RaGRAGRt~p----G~cYRlYTe~-ay~~eml~stvPEIqRTNl~n 718 (1042)
T KOG0924|consen 678 RAGRAGRTGP----GTCYRLYTED-AYKNEMLPSTVPEIQRTNLSN 718 (1042)
T ss_pred hccccCCCCC----cceeeehhhh-HHHhhcccCCCchhhhcchhh
Confidence 9999999997 9999999875 566789999999999877533
No 70
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1e-26 Score=260.66 Aligned_cols=306 Identities=22% Similarity=0.293 Sum_probs=225.8
Q ss_pred cchhhhHHHhCCCeEEEEecCCCcHHHH----HHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccccccccccccccccc
Q 003593 283 HTWFPFARVMKRKIIYHCGPTNSGKTYN----ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF 358 (808)
Q Consensus 283 t~~~~i~~~l~grdvlv~apTGSGKTl~----~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~ 358 (808)
.|-++|..+-++..|+|+|.|.+|||.+ +.+.|....++||.+|.++|-+|-|.+|...-..+++.||+.... +.
T Consensus 133 FQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTIn-P~ 211 (1041)
T KOG0948|consen 133 FQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTIN-PD 211 (1041)
T ss_pred hHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeC-CC
Confidence 3335666678899999999999999988 344556778999999999999999999998888999999997764 56
Q ss_pred CCeEEEeeecccCC--------CceeEEEEccchhhhcccchhHHHHHHhhccccceeccCCc---hHHHHHHHHhhhcC
Q 003593 359 SNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP---SVLDVVRKICSETG 427 (808)
Q Consensus 359 ~~~i~~t~e~l~~~--------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~---~~~~~i~~l~~~~~ 427 (808)
+..++.|.|+|... +-+..||+||+|.|-|..+|-.|...+..||.....++-++ ...+..+.++....
T Consensus 212 ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihk 291 (1041)
T KOG0948|consen 212 ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHK 291 (1041)
T ss_pred CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhc
Confidence 77888887766432 22899999999999999999999988888877644433333 44555666665432
Q ss_pred CCcEE-EEeeecchh--------------hhh------H---HHHHHHH-------------------------------
Q 003593 428 DELHE-QHYERFKPL--------------VVE------A---KTLLGDL------------------------------- 452 (808)
Q Consensus 428 ~~~~~-~~~~r~~~~--------------~~~------~---~~ll~~l------------------------------- 452 (808)
....+ ..-.|+.|+ .++ . ...+..+
T Consensus 292 QPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i 371 (1041)
T KOG0948|consen 292 QPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDI 371 (1041)
T ss_pred CCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccH
Confidence 22111 000111110 000 0 0111111
Q ss_pred -------hhcCCCCE-EEEechhHHHHHHHHHHHh--------------------------------------cCCeEEE
Q 003593 453 -------RNVRSGDC-VVAFSRREIFEVKMAIEKH--------------------------------------TNHHCCV 486 (808)
Q Consensus 453 -------~~~~~g~~-II~fsrk~~~~l~~~L~~~--------------------------------------~g~~v~~ 486 (808)
....-..+ |+.|++++|+.++..+.+. +...+++
T Consensus 372 ~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGI 451 (1041)
T KOG0948|consen 372 YKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGI 451 (1041)
T ss_pred HHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcccc
Confidence 11111113 3344899999988876431 3356889
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCC
Q 003593 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYP 566 (808)
Q Consensus 487 lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~ 566 (808)
+||||-|--++-+.-.|. .|-++||.||..|++|||.|.+.|++....||||...++.|.-+|+|++|||||.|. +.
T Consensus 452 HHsGLLPIlKE~IEILFq--EGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~-Dd 528 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQ--EGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGI-DD 528 (1041)
T ss_pred ccccchHHHHHHHHHHHh--ccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCC-CC
Confidence 999999999999999994 599999999999999999999999999999999999999999999999999999997 56
Q ss_pred ceEEEEEecCCH--HHHHHHhcCCchhh
Q 003593 567 DGLTTTLNLDDL--DYLIECLKQPFEVV 592 (808)
Q Consensus 567 ~G~~i~l~~~d~--~~l~~~l~~~~~~~ 592 (808)
.|.||+++++.. ...+.++.....++
T Consensus 529 rGivIlmiDekm~~~~ak~m~kG~aD~L 556 (1041)
T KOG0948|consen 529 RGIVILMIDEKMEPQVAKDMLKGSADPL 556 (1041)
T ss_pred CceEEEEecCcCCHHHHHHHhcCCCcch
Confidence 899999997643 34455666554443
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=4.1e-26 Score=282.83 Aligned_cols=275 Identities=17% Similarity=0.177 Sum_probs=183.3
Q ss_pred HHHHHH-HHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHc
Q 003593 269 RFRAMI-ESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 269 ~i~~~l-~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
.+.+.+ +..|+ .|+++| .+++++.|+|++++||||||||+.+++.+. .++++|||+|||+||.|+++.++.+
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 333444 34588 788875 777899999999999999999976443221 3568999999999999999999998
Q ss_pred ccccc----ccccccc------ccc------ccCCeEEEeeecccC------CCceeEEEEccchhhhc-----------
Q 003593 342 GVYCS----LLTGQEK------KLV------PFSNHIACTVEMVST------DEMYDVAVIDEIQMMSD----------- 388 (808)
Q Consensus 342 g~~~~----l~~g~~~------~~~------~~~~~i~~t~e~l~~------~~lv~~vVIDEAh~i~d----------- 388 (808)
+...+ ++.|... ... ....++++|+..+.. ...++++||||||++++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 65433 2332211 100 124567788754432 12289999999999996
Q ss_pred ccch-hHHHHHHhhccc------------------------cceeccCCchHHH-HHH-HHhhhc----------CCCcE
Q 003593 389 ACRG-YAWTRALLGLMA------------------------DEIHLCGDPSVLD-VVR-KICSET----------GDELH 431 (808)
Q Consensus 389 ~~~g-~~~~~~l~~l~~------------------------~~i~l~~s~~~~~-~i~-~l~~~~----------~~~~~ 431 (808)
+||. .++..++..++. ..+.+++++|... .+. .+.... ....+
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI 306 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNI 306 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCc
Confidence 5664 456666655543 4566677766542 111 111111 01123
Q ss_pred EEEeeecchhhhhHHHHHHHHhhcCCCCEEEEe-chhH---HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 003593 432 EQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SRRE---IFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD 507 (808)
Q Consensus 432 ~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f-srk~---~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~ 507 (808)
.+.|.... .....+...+.... ...|||+ ++.. ++.++..|... |+++..+||+| .+.+++|++
T Consensus 307 ~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~-gi~v~~~hg~l-----~~~l~~F~~-- 374 (1176)
T PRK09401 307 VDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDL-GINAELAISGF-----ERKFEKFEE-- 374 (1176)
T ss_pred eEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHC-CCcEEEEeCcH-----HHHHHHHHC--
Confidence 33332221 12234555555444 4567777 4445 99999999875 99999999999 234699965
Q ss_pred CCeeEEEE----CCCCccccccC--ccEEEEeCCccCCCCccccCCHhHHHHHhCccC
Q 003593 508 NEFDVLVA----SDAVGMGLNLN--IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559 (808)
Q Consensus 508 g~~~ILVA----Tda~~~GIDip--V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAG 559 (808)
|+++|||| ||+++||||+| |++|||||+|+|--. -...+.|.||+||+-
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~---~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFS---LEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEe---ccccccCHHHHHHHH
Confidence 99999999 79999999997 899999999542110 115678999999984
No 72
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.9e-25 Score=250.18 Aligned_cols=289 Identities=21% Similarity=0.236 Sum_probs=201.6
Q ss_pred hhhhhhhHhhhcccCchHHHHHHHHHHHCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHHHHHHHHhcC---------
Q 003593 249 KFLFPIFVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAK--------- 319 (808)
Q Consensus 249 ~~~~p~f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~L~~L~~~~--------- 319 (808)
+.-+|+|. ..++|++++ ..+-.||+||.||||||++..+.|+++|
T Consensus 252 R~~LPI~a---------eEq~IMEaI-----------------n~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~ 305 (1172)
T KOG0926|consen 252 RLDLPIVA---------EEQRIMEAI-----------------NENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSP 305 (1172)
T ss_pred HhcCchhH---------HHHHHHHHh-----------------hcCCeEEEecCCCCCccccchHHHHHcccCCccCCCC
Confidence 66778887 666777776 7788999999999999999999998765
Q ss_pred cEEEEc-ccHHHHHHHHHHHHH-cccccccccccccccc----ccCCeEEEeee-----cccCCC--ceeEEEEccchhh
Q 003593 320 KGIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLV----PFSNHIACTVE-----MVSTDE--MYDVAVIDEIQMM 386 (808)
Q Consensus 320 ~~lvl~-Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~----~~~~~i~~t~e-----~l~~~~--lv~~vVIDEAh~i 386 (808)
..|-|+ |+|..|..+++++.. +|. .+--.|.+++.. ....+...|-. |.+.-. .+++|||||||..
T Consensus 306 gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER 384 (1172)
T KOG0926|consen 306 GMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER 384 (1172)
T ss_pred CeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc
Confidence 346565 999999999998864 333 222222222211 11223333322 211111 1899999999998
Q ss_pred hcccchhHHHHHHhhcccccee-----------------ccCCch--HHHHHH--HHh-------hh--cCCCcEEEEee
Q 003593 387 SDACRGYAWTRALLGLMADEIH-----------------LCGDPS--VLDVVR--KIC-------SE--TGDELHEQHYE 436 (808)
Q Consensus 387 ~d~~~g~~~~~~l~~l~~~~i~-----------------l~~s~~--~~~~i~--~l~-------~~--~~~~~~~~~~~ 436 (808)
+ ..+.++.|+....+. ++.+++ +.+..+ .+. .. ..-.+.+|+..
T Consensus 385 S------vnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~k 458 (1172)
T KOG0926|consen 385 S------VNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNK 458 (1172)
T ss_pred c------chHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEecc
Confidence 7 456777666443111 112222 111110 000 00 01122233333
Q ss_pred ecchhhhh--HHHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHHh----------------------------------
Q 003593 437 RFKPLVVE--AKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH---------------------------------- 479 (808)
Q Consensus 437 r~~~~~~~--~~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~---------------------------------- 479 (808)
|..+.++. .+..+.+++++++|.++||+| +.++..++..|++.
T Consensus 459 rT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~ 538 (1172)
T KOG0926|consen 459 RTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTD 538 (1172)
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccc
Confidence 44333333 257788889999999999997 68888888887643
Q ss_pred ----------------------------------------------------------------cCCeEEEEcCCCCHHH
Q 003593 480 ----------------------------------------------------------------TNHHCCVIYGALPPET 495 (808)
Q Consensus 480 ----------------------------------------------------------------~g~~v~~lhg~l~~~~ 495 (808)
....|.++|+-|+.+.
T Consensus 539 dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~ 618 (1172)
T KOG0926|consen 539 DFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEK 618 (1172)
T ss_pred cchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHH
Confidence 1357899999999999
Q ss_pred HHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHhCccCCCCCCC
Q 003593 496 RRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIY 565 (808)
Q Consensus 496 R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~ 565 (808)
+.+++..- +.|..-++|||++++..|.|| |+|||+++..| ||.. ...+.|.++.-||+|||||.|.
T Consensus 619 Q~RVF~~~--p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp-- 694 (1172)
T KOG0926|consen 619 QMRVFDEV--PKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP-- 694 (1172)
T ss_pred hhhhccCC--CCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC--
Confidence 99999998 779999999999999999999 99999999875 6643 5788999999999999999997
Q ss_pred CceEEEEEecC
Q 003593 566 PDGLTTTLNLD 576 (808)
Q Consensus 566 ~~G~~i~l~~~ 576 (808)
|.||.||+.
T Consensus 695 --GHcYRLYSS 703 (1172)
T KOG0926|consen 695 --GHCYRLYSS 703 (1172)
T ss_pred --Cceeehhhh
Confidence 999999975
No 73
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=7e-25 Score=259.96 Aligned_cols=308 Identities=21% Similarity=0.222 Sum_probs=208.1
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHhcC----cEEEEc-ccHHHHHHHHHHHHH-ccccccccccccccccc----cCCe
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFMEAK----KGIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVP----FSNH 361 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~~~----~~lvl~-Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~~----~~~~ 361 (808)
-++..++++||||||||++..+.+++.+ ..|+|. |.|.-|..+++++.. +|.+++-.+|..++... ...+
T Consensus 63 ~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Tri 142 (845)
T COG1643 63 EQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRI 142 (845)
T ss_pred HhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCcee
Confidence 6788999999999999999888887755 346555 999999999999975 47766666666655332 2233
Q ss_pred EEEeeecc-----cCCCc--eeEEEEccchhhh-cccchhHHHHH-HhhccccceeccCCchH--HHHHHHHhhh-----
Q 003593 362 IACTVEMV-----STDEM--YDVAVIDEIQMMS-DACRGYAWTRA-LLGLMADEIHLCGDPSV--LDVVRKICSE----- 425 (808)
Q Consensus 362 i~~t~e~l-----~~~~l--v~~vVIDEAh~i~-d~~~g~~~~~~-l~~l~~~~i~l~~s~~~--~~~i~~l~~~----- 425 (808)
-++|-.+| ....+ +++|||||||+.+ +.++.-.+... +...+.+--.++.|+|. .+....+...
T Consensus 143 k~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i 222 (845)
T COG1643 143 KVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEI 222 (845)
T ss_pred EEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEe
Confidence 34553222 22222 9999999999986 21222222222 22223222223444443 2222221110
Q ss_pred cCCCcEE-EEeee-cchhh-hh--HHHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHH-hc--CCeEEEEcCCCCHHHH
Q 003593 426 TGDELHE-QHYER-FKPLV-VE--AKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEK-HT--NHHCCVIYGALPPETR 496 (808)
Q Consensus 426 ~~~~~~~-~~~~r-~~~~~-~~--~~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~-~~--g~~v~~lhg~l~~~~R 496 (808)
.+..+-+ ..|.. ....+ +. ....+........|+++||++ ..++..++..|.+ .. ...++++||.||++++
T Consensus 223 ~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ 302 (845)
T COG1643 223 EGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQ 302 (845)
T ss_pred cCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHH
Confidence 1111111 22211 11111 11 124455556677899999996 6889998888886 33 3789999999999999
Q ss_pred HHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHhCccCCCCCCCC
Q 003593 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIAGRAGRRGSIYP 566 (808)
Q Consensus 497 ~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~ 566 (808)
.++++-- +.|+.+|++|||+++.+|+|| |++||+.+..| ||.. ...|.|.++..||+|||||.+.
T Consensus 303 ~rvF~p~--~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p--- 377 (845)
T COG1643 303 VRVFEPA--PGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP--- 377 (845)
T ss_pred HhhcCCC--CCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC---
Confidence 9988877 457788999999999999997 99999999865 6543 4789999999999999999997
Q ss_pred ceEEEEEecCCHHHHHHHhcCCchhhHHhCCCCcHHHHHHH
Q 003593 567 DGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELF 607 (808)
Q Consensus 567 ~G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 607 (808)
|.||.+|+++... .+...+.+++.+..+.....+|..+
T Consensus 378 -GicyRLyse~~~~--~~~~~t~PEIlrtdLs~~vL~l~~~ 415 (845)
T COG1643 378 -GICYRLYSEEDFL--AFPEFTLPEILRTDLSGLVLQLKSL 415 (845)
T ss_pred -ceEEEecCHHHHH--hcccCCChhhhhcchHHHHHHHHhc
Confidence 9999999875333 7778888888877765544444443
No 74
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=241.17 Aligned_cols=331 Identities=23% Similarity=0.269 Sum_probs=214.2
Q ss_pred HHhCCCeEEEEecCCCcHHHHHHHHHHhcC-----cEEEEc-ccHHHHHHHHHHHHH-ccccccccccccccccc----c
Q 003593 290 RVMKRKIIYHCGPTNSGKTYNALQRFMEAK-----KGIYCS-PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVP----F 358 (808)
Q Consensus 290 ~~l~grdvlv~apTGSGKTl~~L~~L~~~~-----~~lvl~-Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~~----~ 358 (808)
.+-.++.+|++|.||||||++..+.|.++| .-|-|+ |.|..|..++.++.+ .|+..+--+|..++-.. .
T Consensus 276 av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSek 355 (902)
T KOG0923|consen 276 AVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEK 355 (902)
T ss_pred HHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcc
Confidence 347789999999999999999999998865 225555 999999999999875 46666555555544322 1
Q ss_pred CCeEEEee-----ecccCCCc--eeEEEEccchhhhcccchhHHHHHHhhccc-------cceeccCCchHHHHHHHHhh
Q 003593 359 SNHIACTV-----EMVSTDEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMA-------DEIHLCGDPSVLDVVRKICS 424 (808)
Q Consensus 359 ~~~i~~t~-----e~l~~~~l--v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~-------~~i~l~~s~~~~~~i~~l~~ 424 (808)
..+-+.|- |+++.+.+ ++++||||||... --+.+|.+|-+ +.-.++.+++... +++..
T Consensus 356 TvlKYMTDGmLlREfL~epdLasYSViiiDEAHERT------L~TDILfgLvKDIar~RpdLKllIsSAT~DA--ekFS~ 427 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERT------LHTDILFGLVKDIARFRPDLKLLISSATMDA--EKFSA 427 (902)
T ss_pred eeeeeecchhHHHHHhccccccceeEEEeehhhhhh------hhhhHHHHHHHHHHhhCCcceEEeeccccCH--HHHHH
Confidence 11223443 34444444 9999999999975 22455544433 2223344444321 22222
Q ss_pred hcCCCcE---------EEEeeecch--hhhh--HHHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHH---hcC-----C
Q 003593 425 ETGDELH---------EQHYERFKP--LVVE--AKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEK---HTN-----H 482 (808)
Q Consensus 425 ~~~~~~~---------~~~~~r~~~--~~~~--~~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~---~~g-----~ 482 (808)
...+..+ +..|....| .+++ ...+++++.....|++++|++ +.+++.....|.. .+| +
T Consensus 428 fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~el 507 (902)
T KOG0923|consen 428 FFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIREL 507 (902)
T ss_pred hccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceE
Confidence 2222222 222222222 1111 124555556667799999997 4555555554432 223 4
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHH
Q 003593 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVK 552 (808)
Q Consensus 483 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~ 552 (808)
-++++|+.||.+.+.++++-- |.|..+|++|||+++..|.|| |.+||+-+..| |+.+ ...|.|.++..
T Consensus 508 iv~PiYaNLPselQakIFePt--P~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~ 585 (902)
T KOG0923|consen 508 IVLPIYANLPSELQAKIFEPT--PPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASAN 585 (902)
T ss_pred EEeeccccCChHHHHhhcCCC--CCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhh
Confidence 689999999999999999887 789999999999999999997 99999999888 5444 47899999999
Q ss_pred HHhCccCCCCCCCCceEEEEEecCCHHHHHHHhcCCchhhHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCC
Q 003593 553 QIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGS 632 (808)
Q Consensus 553 Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~ 632 (808)
||+|||||.|+ |.|+.||+.. .+..++=..+.+++++..+......+.. ....+|+ .
T Consensus 586 QRaGRAGRtgP----GKCfRLYt~~-aY~~eLE~~t~PEIqRtnL~nvVL~LkS-------LGI~Dl~-----------~ 642 (902)
T KOG0923|consen 586 QRAGRAGRTGP----GKCFRLYTAW-AYEHELEEMTVPEIQRTNLGNVVLLLKS-------LGIHDLI-----------H 642 (902)
T ss_pred hhccccCCCCC----CceEEeechh-hhhhhhccCCCcceeeccchhHHHHHHh-------cCcchhc-----------c
Confidence 99999999997 9999999753 3333333445677776654222222221 1222332 2
Q ss_pred cccCCcchHHHHHHHHHHhcC
Q 003593 633 YFLCRHDHIKKVANMLEKVQG 653 (808)
Q Consensus 633 ~~~c~~~~~~~~a~~l~~~~~ 653 (808)
|..-+.++...+..+|+.+.+
T Consensus 643 FdFmDpPp~etL~~aLE~Lya 663 (902)
T KOG0923|consen 643 FDFLDPPPTETLLKALEQLYA 663 (902)
T ss_pred cccCCCCChHHHHHHHHHHHH
Confidence 334555666667777666543
No 75
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.4e-25 Score=262.96 Aligned_cols=297 Identities=23% Similarity=0.290 Sum_probs=212.3
Q ss_pred HCCCCCC-cchhhhHHHhCCCeEEEEecCCCcHHHH----HHHHHHhcCcEEEEcccHHHHHHHHHHHHHcccc----cc
Q 003593 276 SADLTKP-HTWFPFARVMKRKIIYHCGPTNSGKTYN----ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY----CS 346 (808)
Q Consensus 276 ~~g~~~p-t~~~~i~~~l~grdvlv~apTGSGKTl~----~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~----~~ 346 (808)
..+|.-+ .|..++..+.+|..|+++||||||||.+ .-.++..+.+++|.+|+++|.+|.+..+...-.. ++
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vG 194 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVG 194 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhcc
Confidence 4555422 3334777788999999999999999998 2345567778999999999999999999765444 48
Q ss_pred ccccccccccccCCeEEEeeecccC----C----CceeEEEEccchhhhcccchhHHHHHHhhccccceeccCCch---H
Q 003593 347 LLTGQEKKLVPFSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS---V 415 (808)
Q Consensus 347 l~~g~~~~~~~~~~~i~~t~e~l~~----~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~---~ 415 (808)
++||+.... +.+++++.|.|++.. + +.+..||+||+|+|.|+.+|..|+..++.+|.....++.++| .
T Consensus 195 L~TGDv~IN-~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~ 273 (1041)
T COG4581 195 LMTGDVSIN-PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA 273 (1041)
T ss_pred ceecceeeC-CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH
Confidence 999988765 446677777666532 1 228999999999999999999999999999886433333333 3
Q ss_pred HHHHHHHhhhcCCCc-EEEEeeecchhh-------------hhH------------------------------------
Q 003593 416 LDVVRKICSETGDEL-HEQHYERFKPLV-------------VEA------------------------------------ 445 (808)
Q Consensus 416 ~~~i~~l~~~~~~~~-~~~~~~r~~~~~-------------~~~------------------------------------ 445 (808)
.+....+......+. ++..-.|+.|+. .+.
T Consensus 274 ~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~ 353 (1041)
T COG4581 274 EEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARR 353 (1041)
T ss_pred HHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccccccccc
Confidence 444444443222111 111111111100 000
Q ss_pred --------------HHHHHHHhhcC-CCCEEEEechhHHHHHHHHHHHh-------------------------------
Q 003593 446 --------------KTLLGDLRNVR-SGDCVVAFSRREIFEVKMAIEKH------------------------------- 479 (808)
Q Consensus 446 --------------~~ll~~l~~~~-~g~~II~fsrk~~~~l~~~L~~~------------------------------- 479 (808)
..++..+.... -..++++|+++.|+..+..+...
T Consensus 354 ~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp 433 (1041)
T COG4581 354 TKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELP 433 (1041)
T ss_pred ccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCc
Confidence 00111111111 11244556888888777655310
Q ss_pred ---------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhH
Q 003593 480 ---------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQ 550 (808)
Q Consensus 480 ---------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~ 550 (808)
+...++++|+||=|..|..+...|. .|-++|++||.++++|||.|++.|+++.+.||||...++.+..+
T Consensus 434 ~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq--~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gE 511 (1041)
T COG4581 434 LQILEISALLLRGIAVHHAGLLPAIKELVEELFQ--EGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGE 511 (1041)
T ss_pred ccHHHHHHHHhhhhhhhccccchHHHHHHHHHHh--ccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhH
Confidence 1224568999999999999999995 59999999999999999999999999999999999999999999
Q ss_pred HHHHhCccCCCCCCCCceEEEEEecC
Q 003593 551 VKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 551 y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
|.|++|||||.|- +..|.+++...+
T Consensus 512 y~QmsGRAGRRGl-D~~G~vI~~~~~ 536 (1041)
T COG4581 512 YTQMSGRAGRRGL-DVLGTVIVIEPP 536 (1041)
T ss_pred HHHhhhhhccccc-cccceEEEecCC
Confidence 9999999999997 458999998643
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.92 E-value=2.3e-24 Score=239.53 Aligned_cols=253 Identities=17% Similarity=0.246 Sum_probs=150.6
Q ss_pred hhhHHHhCCC--eEEEEecCCCcHHHHHHHHHHh-cCcEEEEcccHHHHHHHHHHHHHcc--------cccccccccccc
Q 003593 286 FPFARVMKRK--IIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNALG--------VYCSLLTGQEKK 354 (808)
Q Consensus 286 ~~i~~~l~gr--dvlv~apTGSGKTl~~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g--------~~~~l~~g~~~~ 354 (808)
+.+..+..++ .++++||||||||.+++.+++. ..+++|++|+++|+.|++++++++. ..+..++|....
T Consensus 4 ~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 83 (357)
T TIGR03158 4 ATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLK 83 (357)
T ss_pred HHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchH
Confidence 3444456666 3788999999999997666544 4589999999999999999988752 223334443111
Q ss_pred c--------------c-----------ccCCeEE-EeeecccC---------C-------CceeEEEEccchhhhcccch
Q 003593 355 L--------------V-----------PFSNHIA-CTVEMVST---------D-------EMYDVAVIDEIQMMSDACRG 392 (808)
Q Consensus 355 ~--------------~-----------~~~~~i~-~t~e~l~~---------~-------~lv~~vVIDEAh~i~d~~~g 392 (808)
. . ...+.++ ++++++.. . ..++++|+||+|++...+..
T Consensus 84 d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~ 163 (357)
T TIGR03158 84 DIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLV 163 (357)
T ss_pred HHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccch
Confidence 0 0 1134444 44555431 1 23899999999998742211
Q ss_pred -----hHHHHHHhhc--cccceeccCCchHHHHHHHHhhh--cCCC-------------------------------cEE
Q 003593 393 -----YAWTRALLGL--MADEIHLCGDPSVLDVVRKICSE--TGDE-------------------------------LHE 432 (808)
Q Consensus 393 -----~~~~~~l~~l--~~~~i~l~~s~~~~~~i~~l~~~--~~~~-------------------------------~~~ 432 (808)
.....++... ....+.+.+++. ..+...+... .+.+ .+.
T Consensus 164 ~~~~~l~~~~~~~~~~~~~~~i~lSAT~~-~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 242 (357)
T TIGR03158 164 GMLFLLAYMQLIRFFECRRKFVFLSATPD-PALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVE 242 (357)
T ss_pred hhhhhhHHHHHHHhhhcCCcEEEEecCCC-HHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceE
Confidence 1111222211 112222223321 1112222111 1111 111
Q ss_pred EEeeecchhhhh--HHHHHH----HHhhcCCCCEEEEe-chhHHHHHHHHHHHh-cCCeEEEEcCCCCHHHHHHHHHHHh
Q 003593 433 QHYERFKPLVVE--AKTLLG----DLRNVRSGDCVVAF-SRREIFEVKMAIEKH-TNHHCCVIYGALPPETRRQQANLFN 504 (808)
Q Consensus 433 ~~~~r~~~~~~~--~~~ll~----~l~~~~~g~~II~f-srk~~~~l~~~L~~~-~g~~v~~lhg~l~~~~R~~~~~~F~ 504 (808)
+.+.. .+.... ...+++ .+.....++++||| +.+.+..++..|.+. .+..+..+||.+++.+|.+.
T Consensus 243 ~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~----- 316 (357)
T TIGR03158 243 LELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA----- 316 (357)
T ss_pred EEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh-----
Confidence 11111 110000 112222 22223445677777 568899999999864 24678899999999998643
Q ss_pred cCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccC
Q 003593 505 DQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAG 559 (808)
Q Consensus 505 ~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAG 559 (808)
++.+|||||++++||||+|..+||+ + |.+.++|+||+||+|
T Consensus 317 ---~~~~iLVaTdv~~rGiDi~~~~vi~-~----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ---MQFDILLGTSTVDVGVDFKRDWLIF-S----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred ---ccCCEEEEecHHhcccCCCCceEEE-C----------CCCHHHHhhhcccCC
Confidence 4678999999999999998557774 4 679999999999998
No 77
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=9.3e-24 Score=245.07 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=94.8
Q ss_pred HHHHHHhhcC--CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRNVR--SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~~~--~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+.... ...++||+ +...++.++..|.+. |+++..+||.+++.++. +..|.. +...|+||||++|||+
T Consensus 461 aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~-gi~~~~Lhg~~~~rE~~--ii~~ag--~~g~VlVATdmAgRGt 535 (656)
T PRK12898 461 AVAARVRELHAQGRPVLVGTRSVAASERLSALLREA-GLPHQVLNAKQDAEEAA--IVARAG--QRGRITVATNMAGRGT 535 (656)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCCEEEeeCCcHHHHHH--HHHHcC--CCCcEEEEccchhccc
Confidence 4445454322 33456666 467888888888875 99999999997655554 445532 5567999999999999
Q ss_pred ccC----cc-----EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHh
Q 003593 524 NLN----IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (808)
Q Consensus 524 Dip----V~-----~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l 585 (808)
||+ |+ +||++++ |.|...|.||+|||||.|. .|.+++|++.++..+..+.
T Consensus 536 DI~l~~~V~~~GGLhVI~~d~---------P~s~r~y~hr~GRTGRqG~---~G~s~~~is~eD~l~~~~~ 594 (656)
T PRK12898 536 DIKLEPGVAARGGLHVILTER---------HDSARIDRQLAGRCGRQGD---PGSYEAILSLEDDLLQSFL 594 (656)
T ss_pred CcCCccchhhcCCCEEEEcCC---------CCCHHHHHHhcccccCCCC---CeEEEEEechhHHHHHhhh
Confidence 996 44 9999999 9999999999999999999 8999999988776665544
No 78
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=4e-23 Score=226.09 Aligned_cols=106 Identities=22% Similarity=0.347 Sum_probs=90.6
Q ss_pred CCCCEEEEec--hhHHHHHHHHHHHhcCCeEE-EEc--------CCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccc
Q 003593 456 RSGDCVVAFS--RREIFEVKMAIEKHTNHHCC-VIY--------GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524 (808)
Q Consensus 456 ~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~-~lh--------g~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GID 524 (808)
.++..+|+|| |..++.+...|.+. |..+. .+- .||+|.++..+++.|++ |.++|||||++++.|||
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~-~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~--Ge~nVLVaTSVgEEGLD 440 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKI-GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK--GEYNVLVATSVGEEGLD 440 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhc-CCcceeEEeeccccccccccCHHHHHHHHHHHhc--CCceEEEEcccccccCC
Confidence 3445677776 78899999999875 66654 443 47999999999999976 99999999999999999
Q ss_pred cC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 525 LN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 525 ip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
|| |+.||+|++ -.|.--++||.|||||... |.++.|++.+
T Consensus 441 Ip~vDlVifYEp---------vpSeIR~IQR~GRTGR~r~----Grv~vLvt~g 481 (542)
T COG1111 441 IPEVDLVIFYEP---------VPSEIRSIQRKGRTGRKRK----GRVVVLVTEG 481 (542)
T ss_pred CCcccEEEEecC---------CcHHHHHHHhhCccccCCC----CeEEEEEecC
Confidence 99 999999998 6688999999999999854 9999998654
No 79
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=1.5e-23 Score=243.22 Aligned_cols=291 Identities=22% Similarity=0.282 Sum_probs=201.4
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHh--------------cCcEEEEcccHHHHHHHHHHHHHc----cccccccccccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFME--------------AKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTGQEK 353 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~--------------~~~~lvl~Ptr~La~Qi~~~l~~~----g~~~~l~~g~~~ 353 (808)
-++.++|+|||||||||-.++..+++ +-++|||+|+++||.++++.+.+. |+.+.-+||+..
T Consensus 124 ~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~q 203 (1230)
T KOG0952|consen 124 KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQ 203 (1230)
T ss_pred cCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcch
Confidence 46779999999999999886555542 227899999999999999888653 778888888754
Q ss_pred c---ccccCCeEEEeeeccc---CCC--------ceeEEEEccchhhhcccchhHHHHHHhhcc------ccceeccC-C
Q 003593 354 K---LVPFSNHIACTVEMVS---TDE--------MYDVAVIDEIQMMSDACRGYAWTRALLGLM------ADEIHLCG-D 412 (808)
Q Consensus 354 ~---~~~~~~~i~~t~e~l~---~~~--------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~------~~~i~l~~-s 412 (808)
- .+...+++++|||..+ ... .+.+|||||+|++-|. +|+.++.++..+. -.-+++++ +
T Consensus 204 l~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLS 282 (1230)
T KOG0952|consen 204 LTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLS 282 (1230)
T ss_pred hhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEee
Confidence 2 2345667888887542 221 2899999999999986 9999987775443 22344444 2
Q ss_pred chHHHHHHHHhhhcCCCc---EEEEee--ecchhh-----------------hhHHHHHHHHhhcCCCCEEEEe--chhH
Q 003593 413 PSVLDVVRKICSETGDEL---HEQHYE--RFKPLV-----------------VEAKTLLGDLRNVRSGDCVVAF--SRRE 468 (808)
Q Consensus 413 ~~~~~~i~~l~~~~~~~~---~~~~~~--r~~~~~-----------------~~~~~ll~~l~~~~~g~~II~f--srk~ 468 (808)
++ +....+++.+...+. +..+-. |+.|+. .+.-...+.+.....|..+.+| +|++
T Consensus 283 AT-lPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~ 361 (1230)
T KOG0952|consen 283 AT-LPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNE 361 (1230)
T ss_pred cc-CCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChH
Confidence 22 222222333333221 111111 111110 0111112222334556555555 6888
Q ss_pred HHHHHHHHHHh----------------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC
Q 003593 469 IFEVKMAIEKH----------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526 (808)
Q Consensus 469 ~~~l~~~L~~~----------------------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip 526 (808)
+...++.|.+. ......++|+||.-++|..+.+.|.. |.++|||||..++.|+|+|
T Consensus 362 Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G~i~vL~cTaTLAwGVNLP 439 (1230)
T KOG0952|consen 362 TIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--GHIKVLCCTATLAWGVNLP 439 (1230)
T ss_pred HHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc--CCceEEEecceeeeccCCc
Confidence 88888877642 12457889999999999999999955 9999999999999999999
Q ss_pred ccEEEEeCCccCCCCc--cccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCH-HHHHHHhcC
Q 003593 527 IRRVVFYSLSKYNGDK--IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL-DYLIECLKQ 587 (808)
Q Consensus 527 V~~VI~~~~~K~dg~~--~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~-~~l~~~l~~ 587 (808)
..+||..+..-||... ..-.++-+.+|+.|||||.+-+ ..|.++.+.+.|. .++..+|..
T Consensus 440 A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd-~~G~giIiTt~dkl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 440 AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD-SSGEGIIITTRDKLDHYESLLTG 502 (1230)
T ss_pred ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC-CCceEEEEecccHHHHHHHHHcC
Confidence 9999999988888764 6677899999999999998763 3699888887664 444555554
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3e-23 Score=245.52 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=99.0
Q ss_pred HHHHHHhhc--CCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRNV--RSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~~--~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+... ....++||+ |...++.++..|.+. |+++..+||.+.+.++..+...+. .| .|+||||++|||+
T Consensus 416 al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~-gi~~~~L~~~~~~~e~~~i~~ag~--~g--~VlIATdmAgRG~ 490 (790)
T PRK09200 416 AVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA-GIPHNLLNAKNAAKEAQIIAEAGQ--KG--AVTVATNMAGRGT 490 (790)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCCEEEecCCccHHHHHHHHHcCC--CC--eEEEEccchhcCc
Confidence 455555332 334456665 467888899988875 999999999999999888888874 24 7999999999999
Q ss_pred cc---C-cc-----EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 524 NL---N-IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 524 Di---p-V~-----~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
|| | |. +||++++ |.+...|.||+|||||.|. .|.+++|++.++..+..
T Consensus 491 DI~l~~~V~~~GGL~VI~~d~---------p~s~r~y~qr~GRtGR~G~---~G~s~~~is~eD~l~~~ 547 (790)
T PRK09200 491 DIKLGEGVHELGGLAVIGTER---------MESRRVDLQLRGRSGRQGD---PGSSQFFISLEDDLLKR 547 (790)
T ss_pred CCCcccccccccCcEEEeccC---------CCCHHHHHHhhccccCCCC---CeeEEEEEcchHHHHHh
Confidence 99 6 88 9999999 9999999999999999999 89999999877666544
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.1e-23 Score=244.71 Aligned_cols=261 Identities=16% Similarity=0.145 Sum_probs=167.5
Q ss_pred CeEEEEecCCCcHHHHHHHHHHh-cCcEEEEcccHHHHHHHHHHHHHcc----cccccccccccccc-ccCCeEEEeeec
Q 003593 295 KIIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNALG----VYCSLLTGQEKKLV-PFSNHIACTVEM 368 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g----~~~~l~~g~~~~~~-~~~~~i~~t~e~ 368 (808)
+..++++|||+|||++++..+.. .+++|||||+.+|+.|+.+++.++. ..+..++|...... ....++++|..+
T Consensus 274 r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~ 353 (732)
T TIGR00603 274 RSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKERFHGEAGVVVSTYSM 353 (732)
T ss_pred CCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccccccCCcEEEEEHHH
Confidence 47899999999999996655543 4689999999999999999999873 23444555443321 125677788877
Q ss_pred ccCC----------------CceeEEEEccchhhhcccchhHHHHHHhhcccc-ceeccCCchHHHH-HHHHhhhcCCC-
Q 003593 369 VSTD----------------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLDV-VRKICSETGDE- 429 (808)
Q Consensus 369 l~~~----------------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~-~i~l~~s~~~~~~-i~~l~~~~~~~- 429 (808)
+... ..+++||+||||++.. ..++.++..+.+. ++-|+++|...+. ...+....+..
T Consensus 354 l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~v 429 (732)
T TIGR00603 354 VAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKL 429 (732)
T ss_pred hhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCee
Confidence 6421 1278999999999963 4566666555443 4445555531110 00011111111
Q ss_pred ----------------cEE-EEeeecchh----------------hhh---HHHHHH-HHhhc-CCCCEEEEec-h-hHH
Q 003593 430 ----------------LHE-QHYERFKPL----------------VVE---AKTLLG-DLRNV-RSGDCVVAFS-R-REI 469 (808)
Q Consensus 430 ----------------~~~-~~~~r~~~~----------------~~~---~~~ll~-~l~~~-~~g~~II~fs-r-k~~ 469 (808)
... .......+. ... +-..+. .+..+ ..++.+|+|+ . ..+
T Consensus 430 ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l 509 (732)
T TIGR00603 430 YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFAL 509 (732)
T ss_pred eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHH
Confidence 000 000000000 000 001112 22222 2555555554 2 444
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCcccc-CC
Q 003593 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIP-VP 547 (808)
Q Consensus 470 ~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P-~s 547 (808)
..++..| + +..+||++++.+|.++++.|+. ++.+++||+|+++++|||+| +++||+++. | .|
T Consensus 510 ~~~a~~L----~--~~~I~G~ts~~ER~~il~~Fr~-~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~---------~~gS 573 (732)
T TIGR00603 510 KEYAIKL----G--KPFIYGPTSQQERMQILQNFQH-NPKVNTIFLSKVGDTSIDLPEANVLIQISS---------HYGS 573 (732)
T ss_pred HHHHHHc----C--CceEECCCCHHHHHHHHHHHHh-CCCccEEEEecccccccCCCCCCEEEEeCC---------CCCC
Confidence 4444443 3 5678999999999999999974 45889999999999999998 999999997 5 59
Q ss_pred HhHHHHHhCccCCCCCCCCceEE-------EEEecCCH
Q 003593 548 GSQVKQIAGRAGRRGSIYPDGLT-------TTLNLDDL 578 (808)
Q Consensus 548 ~~~y~Qr~GRAGR~G~~~~~G~~-------i~l~~~d~ 578 (808)
..+|+||+||++|.+. .|.+ |.|++.+.
T Consensus 574 ~~q~iQRlGRilR~~~---~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 574 RRQEAQRLGRILRAKK---GSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred HHHHHHHhcccccCCC---CCccccccceEEEEecCCc
Confidence 9999999999999987 4443 78887654
No 82
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=2.2e-23 Score=251.68 Aligned_cols=288 Identities=20% Similarity=0.255 Sum_probs=196.8
Q ss_pred HHHHHHCCCCCCcc--hhhhHHHhCCCeEEEEecCCCcHHHHHHHHHHh----cC--cEEEEcccHHHHHHHHHHHHHc-
Q 003593 271 RAMIESADLTKPHT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFME----AK--KGIYCSPLRLLAMEVFDKVNAL- 341 (808)
Q Consensus 271 ~~~l~~~g~~~pt~--~~~i~~~l~grdvlv~apTGSGKTl~~L~~L~~----~~--~~lvl~Ptr~La~Qi~~~l~~~- 341 (808)
..++.+.|...++. ..++..+.+|++||++.|||||||.||+.+++. ++ ++|||.||++||++|.++++++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 45666777776655 457778899999999999999999998888764 33 6699999999999999999887
Q ss_pred ---c--ccccccccccccccc-----c-CCeEEEeeecccCCC------------ceeEEEEccchhhhcccchhHHHHH
Q 003593 342 ---G--VYCSLLTGQEKKLVP-----F-SNHIACTVEMVSTDE------------MYDVAVIDEIQMMSDACRGYAWTRA 398 (808)
Q Consensus 342 ---g--~~~~l~~g~~~~~~~-----~-~~~i~~t~e~l~~~~------------lv~~vVIDEAh~i~d~~~g~~~~~~ 398 (808)
+ +.+..++|+...... . ..++.+++.|+...- .+.+||+||+|..--. ||..+--.
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecccc-chhHHHHH
Confidence 3 456678888765432 2 345566788875421 1899999999998542 66665433
Q ss_pred Hhhc-------cccceeccCCchHHHHHHHHhhhcCCCcEE-----------EEeeecchh------------hhhHHHH
Q 003593 399 LLGL-------MADEIHLCGDPSVLDVVRKICSETGDELHE-----------QHYERFKPL------------VVEAKTL 448 (808)
Q Consensus 399 l~~l-------~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~-----------~~~~r~~~~------------~~~~~~l 448 (808)
+..| ....+.++.++|.-...+......+..... ..+....|. ......+
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~ 298 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATL 298 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHH
Confidence 3222 234556666665433322222211111111 122222220 0111122
Q ss_pred HHHHhhcCCCCE-EEEe-chhHHHHHHH----HHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCC
Q 003593 449 LGDLRNVRSGDC-VVAF-SRREIFEVKM----AIEKH---TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519 (808)
Q Consensus 449 l~~l~~~~~g~~-II~f-srk~~~~l~~----~L~~~---~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~ 519 (808)
...+ ...+-. ++|+ +++.++.++. .+... ....+..++|+|+.++|.++...|+. |+..++++|+++
T Consensus 299 ~~~~--~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~--g~~~~~~st~Al 374 (851)
T COG1205 299 AALL--VRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE--GELLGVIATNAL 374 (851)
T ss_pred HHHH--HHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc--CCccEEecchhh
Confidence 2222 223334 4444 6777777753 33322 12678999999999999999999965 999999999999
Q ss_pred ccccccC-ccEEEEeCCccCCCCccccC-CHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 520 GMGLNLN-IRRVVFYSLSKYNGDKIIPV-PGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 520 ~~GIDip-V~~VI~~~~~K~dg~~~~P~-s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
.-||||. ++.||.++. |. +..++.||+|||||.+. .+..+....
T Consensus 375 elgidiG~ldavi~~g~---------P~~s~~~~~Q~~GRaGR~~~---~~l~~~v~~ 420 (851)
T COG1205 375 ELGIDIGSLDAVIAYGY---------PGVSVLSFRQRAGRAGRRGQ---ESLVLVVLR 420 (851)
T ss_pred hhceeehhhhhHhhcCC---------CCchHHHHHHhhhhccCCCC---CceEEEEeC
Confidence 9999995 999999998 88 99999999999999997 566666654
No 83
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=1.9e-23 Score=259.53 Aligned_cols=262 Identities=19% Similarity=0.212 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHH
Q 003593 266 EIKRFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 266 ~l~~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
....+.+.+.......|+++| .+++++.|+|++++||||||||+.+++.+ ..++++|||+|||+||.|+++.++
T Consensus 63 ~~~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 63 ELKEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 444566666654555799975 77789999999999999999998543322 135689999999999999999999
Q ss_pred Hccccc-------ccccccccccc----------ccCCeEEEeeecccC-----CCceeEEEEccchhhhc---------
Q 003593 340 ALGVYC-------SLLTGQEKKLV----------PFSNHIACTVEMVST-----DEMYDVAVIDEIQMMSD--------- 388 (808)
Q Consensus 340 ~~g~~~-------~l~~g~~~~~~----------~~~~~i~~t~e~l~~-----~~lv~~vVIDEAh~i~d--------- 388 (808)
+++... +.++|...... ....++++|+..+.. ...++++||||||+|++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il 222 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLL 222 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHH
Confidence 875322 12344322110 124566777754421 11488999999999998
Q ss_pred --ccchhH-HHHHHh----------------------hccccce--eccCCch-HHHHHH-HHhhhc----------CCC
Q 003593 389 --ACRGYA-WTRALL----------------------GLMADEI--HLCGDPS-VLDVVR-KICSET----------GDE 429 (808)
Q Consensus 389 --~~~g~~-~~~~l~----------------------~l~~~~i--~l~~s~~-~~~~i~-~l~~~~----------~~~ 429 (808)
+||..+ +..++. .++..++ .+++++| ....+. .+.... ...
T Consensus 223 ~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r 302 (1171)
T TIGR01054 223 KLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLR 302 (1171)
T ss_pred HHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCcccccc
Confidence 566653 333321 2233333 3345666 222111 121111 011
Q ss_pred cEEEEeeecchhhhhHHHHHHHHhhcCCCCEEEEe-ch---hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 003593 430 LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SR---REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND 505 (808)
Q Consensus 430 ~~~~~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f-sr---k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~ 505 (808)
.+.+.|..... ....+...+.... ...|||+ ++ +.++.++..|.+. |+++..+||++++ .++++|++
T Consensus 303 ~I~~~~~~~~~---~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~-g~~a~~lhg~~~~----~~l~~Fr~ 373 (1171)
T TIGR01054 303 NVVDVYVEDED---LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENH-GVKAVAYHATKPK----EDYEKFAE 373 (1171)
T ss_pred ceEEEEEeccc---HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhC-CceEEEEeCCCCH----HHHHHHHc
Confidence 23333322111 1234555555544 4566666 55 7899999999875 9999999999973 68999975
Q ss_pred CCCCeeEEEE----CCCCccccccC--ccEEEEeCCccC
Q 003593 506 QDNEFDVLVA----SDAVGMGLNLN--IRRVVFYSLSKY 538 (808)
Q Consensus 506 ~~g~~~ILVA----Tda~~~GIDip--V~~VI~~~~~K~ 538 (808)
|+++|||| ||+++||||+| |++|||||+|+|
T Consensus 374 --G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 374 --GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred --CCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999999 59999999997 799999999986
No 84
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=1.3e-23 Score=256.65 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=90.4
Q ss_pred CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCC--------CCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-
Q 003593 457 SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGA--------LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN- 526 (808)
Q Consensus 457 ~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~--------l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip- 526 (808)
.+++|||+ ++..+..++..|.. .|+.+..+||. |++.+|..++++|+. |+.+|||||+++++|+|+|
T Consensus 365 ~~kvlIF~~~~~t~~~L~~~L~~-~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~eGldi~~ 441 (773)
T PRK13766 365 DSRIIVFTQYRDTAEKIVDLLEK-EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA--GEFNVLVSTSVAEEGLDIPS 441 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHh-CCCceEEEEccccccccCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcCCCccc
Confidence 34455555 36788888888865 48999999986 999999999999975 9999999999999999998
Q ss_pred ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 527 V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
+++||+||+ |.+...|+||+||+||.|. |.++.|+..
T Consensus 442 ~~~VI~yd~---------~~s~~r~iQR~GR~gR~~~----~~v~~l~~~ 478 (773)
T PRK13766 442 VDLVIFYEP---------VPSEIRSIQRKGRTGRQEE----GRVVVLIAK 478 (773)
T ss_pred CCEEEEeCC---------CCCHHHHHHHhcccCcCCC----CEEEEEEeC
Confidence 999999999 8899999999999999987 888888753
No 85
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.90 E-value=2.2e-22 Score=236.12 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=93.8
Q ss_pred HHHHHHhh--cCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRN--VRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~--~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+.. .....++||+ +...++.+...|.+. |+++.++||.+.+.+|..+..++. .| .|+||||++|||+
T Consensus 412 ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~-gi~~~~L~a~~~~~E~~ii~~ag~--~g--~VlIATdmAgRGt 486 (762)
T TIGR03714 412 ATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE-GIPHNLLNAQNAAKEAQIIAEAGQ--KG--AVTVATSMAGRGT 486 (762)
T ss_pred HHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC-CCCEEEecCCChHHHHHHHHHcCC--CC--eEEEEcccccccc
Confidence 45555533 2334456666 456777788888764 999999999999999988888773 24 7999999999999
Q ss_pred ccC----------ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 524 NLN----------IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 524 Dip----------V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
||| +.+||++++ |..... .||+|||||.|. +|.++.|++.++..+..
T Consensus 487 DI~l~~~v~~~GGL~vIit~~~---------ps~rid-~qr~GRtGRqG~---~G~s~~~is~eD~l~~~ 543 (762)
T TIGR03714 487 DIKLGKGVAELGGLAVIGTERM---------ENSRVD-LQLRGRSGRQGD---PGSSQFFVSLEDDLIKR 543 (762)
T ss_pred CCCCCccccccCCeEEEEecCC---------CCcHHH-HHhhhcccCCCC---ceeEEEEEccchhhhhh
Confidence 996 578899998 766666 999999999999 89999999876655543
No 86
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=2.1e-24 Score=216.21 Aligned_cols=258 Identities=18% Similarity=0.197 Sum_probs=173.3
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-----cC--cEEEEcccHHHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-----AK--KGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-----~~--~~lvl~Ptr~La~Qi~~~l~ 339 (808)
.+++++-..||..|+.+| +||.+.-|-||+..|..|.|||.++..+-+. .| .++|+|.||+||-|+.++..
T Consensus 52 ellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~ 131 (387)
T KOG0329|consen 52 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYE 131 (387)
T ss_pred HHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHH
Confidence 455677899999999985 7888899999999999999999884433322 12 56899999999999977666
Q ss_pred Hc-----cccccccccc-cccc----cccCCeEE-Eeeecc----cCC----CceeEEEEccchhhhcc-cchhHHHHHH
Q 003593 340 AL-----GVYCSLLTGQ-EKKL----VPFSNHIA-CTVEMV----STD----EMYDVAVIDEIQMMSDA-CRGYAWTRAL 399 (808)
Q Consensus 340 ~~-----g~~~~l~~g~-~~~~----~~~~~~i~-~t~e~l----~~~----~lv~~vVIDEAh~i~d~-~~g~~~~~~l 399 (808)
.+ ++++++.-|. .+.. ....+|++ .||..+ ... ..+..+|+||+|.|++. ....+...++
T Consensus 132 rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEif 211 (387)
T KOG0329|consen 132 RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIF 211 (387)
T ss_pred HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHh
Confidence 55 3444444443 3221 12345544 455221 111 11889999999988741 2233455666
Q ss_pred hhccccceeccCCchHHHHHHHHhhhcCCCcEEE---------------EeeecchhhhhHHHHHHHHhhcCCCCEEEEe
Q 003593 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQ---------------HYERFKPLVVEAKTLLGDLRNVRSGDCVVAF 464 (808)
Q Consensus 400 ~~l~~~~i~l~~s~~~~~~i~~l~~~~~~~~~~~---------------~~~r~~~~~~~~~~ll~~l~~~~~g~~II~f 464 (808)
...|...+.++++++..+.++.+|.....+.... +|..+... .+...+.+.|..+.-...+||.
T Consensus 212 r~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~-eKNrkl~dLLd~LeFNQVvIFv 290 (387)
T KOG0329|consen 212 RMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKEN-EKNRKLNDLLDVLEFNQVVIFV 290 (387)
T ss_pred hcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhh-hhhhhhhhhhhhhhhcceeEee
Confidence 7777888889999988888877776554332211 11111110 0112333334333444444444
Q ss_pred -chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCc
Q 003593 465 -SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDK 542 (808)
Q Consensus 465 -srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~ 542 (808)
+..+ + .|. + + +|||+++|||+||. |..|+|||+
T Consensus 291 Ksv~R-------------------------------l-~f~----k-r-~vat~lfgrgmdiervNi~~NYdm------- 325 (387)
T KOG0329|consen 291 KSVQR-------------------------------L-SFQ----K-R-LVATDLFGRGMDIERVNIVFNYDM------- 325 (387)
T ss_pred ehhhh-------------------------------h-hhh----h-h-hHHhhhhccccCcccceeeeccCC-------
Confidence 2111 1 142 1 2 99999999999996 999999999
Q ss_pred cccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 543 ~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
|.+..+|+||+|||||.|. .|.+++|++..
T Consensus 326 --p~~~DtYlHrv~rAgrfGt---kglaitfvs~e 355 (387)
T KOG0329|consen 326 --PEDSDTYLHRVARAGRFGT---KGLAITFVSDE 355 (387)
T ss_pred --CCCchHHHHHhhhhhcccc---ccceeehhcch
Confidence 9999999999999999999 99999999754
No 87
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=1.3e-21 Score=236.83 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=97.5
Q ss_pred HHHHHhhcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC
Q 003593 448 LLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN 526 (808)
Q Consensus 448 ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip 526 (808)
++..+......++|||+ ++..+..+...|....|+++..+||+|++.+|.++++.|+...|..+|||||+++++|+|++
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq 563 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQ 563 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcc
Confidence 45555555555666666 46788899999966569999999999999999999999975335799999999999999997
Q ss_pred -ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEe
Q 003593 527 -IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 527 -V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~ 574 (808)
+++|||||+ |.+++.|.||+||+||.|. .|.+..++
T Consensus 564 ~a~~VInfDl---------P~nP~~~eQRIGR~~RiGQ---~~~V~i~~ 600 (956)
T PRK04914 564 FASHLVLFDL---------PFNPDLLEQRIGRLDRIGQ---KHDIQIHV 600 (956)
T ss_pred cccEEEEecC---------CCCHHHHHHHhcccccCCC---CceEEEEE
Confidence 999999999 9999999999999999999 67665554
No 88
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=3.9e-21 Score=224.40 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=95.6
Q ss_pred CCCCEEEEe--chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC---cc--
Q 003593 456 RSGDCVVAF--SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IR-- 528 (808)
Q Consensus 456 ~~g~~II~f--srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip---V~-- 528 (808)
..|..+++| +...++.+...|.+. |+++..+||. +.+|+..+..|. .+...|+||||++|||+||+ |.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~-gi~~~~Lna~--q~~rEa~ii~~a--g~~g~VtIATnmAgRGtDI~l~~V~~~ 477 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKER-GIPHNVLNAK--NHEREAEIIAQA--GRKGAVTIATNMAGRGTDIKLEEVKEL 477 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHc-CCCeEEeeCC--hHHHHHHHHHhc--CCCceEEEEeccccCCcCCCccchhhc
Confidence 445544444 357788888888775 9999999999 889999999995 48999999999999999993 55
Q ss_pred ---EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHH
Q 003593 529 ---RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (808)
Q Consensus 529 ---~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~ 584 (808)
+||++++ |.|...|.|++|||||.|. +|.+..|++.++..+..+
T Consensus 478 GGl~VI~t~~---------p~s~ri~~q~~GRtGRqG~---~G~s~~~ls~eD~l~~~~ 524 (745)
T TIGR00963 478 GGLYVIGTER---------HESRRIDNQLRGRSGRQGD---PGSSRFFLSLEDNLMRIF 524 (745)
T ss_pred CCcEEEecCC---------CCcHHHHHHHhccccCCCC---CcceEEEEeccHHHHHhh
Confidence 9999999 9999999999999999999 899999998877666543
No 89
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=2.5e-21 Score=227.11 Aligned_cols=291 Identities=23% Similarity=0.319 Sum_probs=195.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHh---------------cCcEEEEcccHHHHHHHHHHHH----Hccccccccccccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFME---------------AKKGIYCSPLRLLAMEVFDKVN----ALGVYCSLLTGQEK 353 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~~---------------~~~~lvl~Ptr~La~Qi~~~l~----~~g~~~~l~~g~~~ 353 (808)
...++++|||||+|||..++..+++ ..+++|++|+.+|+++++..+. .+|+.+.-.||+..
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~ 403 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQ 403 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccccc
Confidence 3458999999999999986554442 1268999999999999988654 45888887888765
Q ss_pred cc---cccCCeEEEeeecc---cCC-------CceeEEEEccchhhhcccchhHHHHHHhhcccc------ceeccC-C-
Q 003593 354 KL---VPFSNHIACTVEMV---STD-------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD------EIHLCG-D- 412 (808)
Q Consensus 354 ~~---~~~~~~i~~t~e~l---~~~-------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~------~i~l~~-s- 412 (808)
.. ......+++|+|-. +.. .+++++||||+|++.|. +|+....+....... ...+.+ +
T Consensus 404 l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSA 482 (1674)
T KOG0951|consen 404 LGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSA 482 (1674)
T ss_pred chhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecc
Confidence 32 23456678888654 333 13899999999999875 899987665433211 112221 1
Q ss_pred --chHHHHHHHHhhhcCCCcE-EEEeeecchhhh----------------hHHHHH-HHHhhcCCCCEEEEe-chhHHHH
Q 003593 413 --PSVLDVVRKICSETGDELH-EQHYERFKPLVV----------------EAKTLL-GDLRNVRSGDCVVAF-SRREIFE 471 (808)
Q Consensus 413 --~~~~~~i~~l~~~~~~~~~-~~~~~r~~~~~~----------------~~~~ll-~~l~~~~~g~~II~f-srk~~~~ 471 (808)
|...+... ++......++ ...-.|+.|+.. ...... +.+....++.++||+ +|+++.+
T Consensus 483 TLPNy~DV~~-Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~k 561 (1674)
T KOG0951|consen 483 TLPNYEDVAS-FLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAK 561 (1674)
T ss_pred cCCchhhhHH-HhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHH
Confidence 22233222 2221111111 001123333211 111222 234455666677776 8998888
Q ss_pred HHHHHHHh------------------------------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEE
Q 003593 472 VKMAIEKH------------------------------------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVA 515 (808)
Q Consensus 472 l~~~L~~~------------------------------------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVA 515 (808)
.+..++.. ..+..+++|+||+..+|..+.+.|.+ |.++|||+
T Consensus 562 tA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~--g~iqvlvs 639 (1674)
T KOG0951|consen 562 TARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD--GHIQVLVS 639 (1674)
T ss_pred HHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc--CceeEEEe
Confidence 88777621 45788999999999999999999975 99999999
Q ss_pred CCCCccccccCccEEEEeCCccCCCC--ccccCCHhHHHHHhCccCCCCCCCCceEEEEEec-CCHHHHHHHhcCC
Q 003593 516 SDAVGMGLNLNIRRVVFYSLSKYNGD--KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL-DDLDYLIECLKQP 588 (808)
Q Consensus 516 Tda~~~GIDipV~~VI~~~~~K~dg~--~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~-~d~~~l~~~l~~~ 588 (808)
|-.+++|+|+|.+.||.-+..-||.+ +..+.++-+.+||.|||||.+.+ ..|..+.... .+..+....+++.
T Consensus 640 tatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D-~~gegiiit~~se~qyyls~mn~q 714 (1674)
T KOG0951|consen 640 TATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYD-TCGEGIIITDHSELQYYLSLMNQQ 714 (1674)
T ss_pred ehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccC-cCCceeeccCchHhhhhHHhhhhc
Confidence 99999999999999999999889877 56788999999999999998763 2344444432 2334445555553
No 90
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.86 E-value=2.7e-20 Score=214.78 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=85.6
Q ss_pred EEEEe-chhHHHHHHHHHHHh--cCCeEEEEc--------CCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-c
Q 003593 460 CVVAF-SRREIFEVKMAIEKH--TNHHCCVIY--------GALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-I 527 (808)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~~--~g~~v~~lh--------g~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V 527 (808)
.|||. +|..+..+...|.+. .|.+...+- .+|++.++..+++.|++ |+++|||||++++.||||+ |
T Consensus 416 ~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~--G~~NvLVATSV~EEGLDI~ec 493 (746)
T KOG0354|consen 416 TIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD--GEINVLVATSVAEEGLDIGEC 493 (746)
T ss_pred EEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC--CCccEEEEecchhccCCcccc
Confidence 45555 578899999988742 234444443 38999999999999976 9999999999999999998 9
Q ss_pred cEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 528 RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 528 ~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
+.||-||. -.++-..+||.|| ||+.. |.|+++.+.
T Consensus 494 ~lVIcYd~---------~snpIrmIQrrGR-gRa~n----s~~vll~t~ 528 (746)
T KOG0354|consen 494 NLVICYDY---------SSNPIRMVQRRGR-GRARN----SKCVLLTTG 528 (746)
T ss_pred cEEEEecC---------CccHHHHHHHhcc-ccccC----CeEEEEEcc
Confidence 99999999 7789999999999 99987 999999873
No 91
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.85 E-value=7.1e-21 Score=202.62 Aligned_cols=112 Identities=17% Similarity=0.356 Sum_probs=99.8
Q ss_pred HHhhcCCCCEEEEe-chhHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-
Q 003593 451 DLRNVRSGDCVVAF-SRREIFEVKMAIEKHTN--HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN- 526 (808)
Q Consensus 451 ~l~~~~~g~~II~f-srk~~~~l~~~L~~~~g--~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip- 526 (808)
.+.++...++|||| ++.+|+.+.+.+.+..| +.|+++||+..|.+|...++.|.. +.++.|||||+++|||||-
T Consensus 499 ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 499 AIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeEEEEEehhhhccccccC
Confidence 34455566778877 67899999999988655 789999999999999999999965 9999999999999999995
Q ss_pred ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 527 V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
+-++||..+ |.+...|+|||||.||+-+ .|.+|.++..
T Consensus 577 ~p~~invtl---------pd~k~nyvhrigrvgraer---mglaislvat 614 (725)
T KOG0349|consen 577 LPFMINVTL---------PDDKTNYVHRIGRVGRAER---MGLAISLVAT 614 (725)
T ss_pred CceEEEEec---------Ccccchhhhhhhccchhhh---cceeEEEeec
Confidence 999999999 9999999999999999999 8999999854
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.85 E-value=5.2e-20 Score=209.86 Aligned_cols=263 Identities=18% Similarity=0.191 Sum_probs=170.6
Q ss_pred CCcchhhhHHHhC----CCeEEEEecCCCcHHHHHHHHHHhcC-cEEEEcccHHHHHHHHHHHHHccc---ccccccccc
Q 003593 281 KPHTWFPFARVMK----RKIIYHCGPTNSGKTYNALQRFMEAK-KGIYCSPLRLLAMEVFDKVNALGV---YCSLLTGQE 352 (808)
Q Consensus 281 ~pt~~~~i~~~l~----grdvlv~apTGSGKTl~~L~~L~~~~-~~lvl~Ptr~La~Qi~~~l~~~g~---~~~l~~g~~ 352 (808)
+|.|..++..... ++..++++|||+|||..++..+..-+ .+|||+|+++|+.|+.+.+..... ..+.++|..
T Consensus 38 r~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~ 117 (442)
T COG1061 38 RPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGE 117 (442)
T ss_pred cHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecCce
Confidence 3444444544555 88999999999999999777776543 499999999999999988876643 356677766
Q ss_pred ccccccCCeEEEeeecccCC--------CceeEEEEccchhhhcccchhHHHHHHhhcccc--ceeccCCchHHH-----
Q 003593 353 KKLVPFSNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD--EIHLCGDPSVLD----- 417 (808)
Q Consensus 353 ~~~~~~~~~i~~t~e~l~~~--------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~--~i~l~~s~~~~~----- 417 (808)
..... ..+.+.|+..+... +.+++||+||||++.... ++.+...+.+. .+-|+++|...+
T Consensus 118 ~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~~~~~LGLTATp~R~D~~~~~ 192 (442)
T COG1061 118 KELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLSAAYPRLGLTATPEREDGGRIG 192 (442)
T ss_pred eccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhhcccceeeeccCceeecCCchh
Confidence 55333 45677777665543 128999999999998532 23222222222 133333322111
Q ss_pred HHHHHh-------------h-hcCCCcEEE-Eeeecch--------hh------------------------hhH---HH
Q 003593 418 VVRKIC-------------S-ETGDELHEQ-HYERFKP--------LV------------------------VEA---KT 447 (808)
Q Consensus 418 ~i~~l~-------------~-~~~~~~~~~-~~~r~~~--------~~------------------------~~~---~~ 447 (808)
.+..+. . ....+.... ....... .. ... ..
T Consensus 193 ~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (442)
T COG1061 193 DLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAA 272 (442)
T ss_pred HHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHH
Confidence 111111 0 001111100 0000000 00 000 01
Q ss_pred HHHHHhhc-CCCCEEEEec-hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccccc
Q 003593 448 LLGDLRNV-RSGDCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL 525 (808)
Q Consensus 448 ll~~l~~~-~~g~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDi 525 (808)
+...+..+ ....++||.+ ...+..++..+... |. +..+.|..++.+|..+++.|+. |.+++||++.++..|+|+
T Consensus 273 ~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~-~~-~~~it~~t~~~eR~~il~~fr~--g~~~~lv~~~vl~EGvDi 348 (442)
T COG1061 273 VRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP-GI-VEAITGETPKEEREAILERFRT--GGIKVLVTVKVLDEGVDI 348 (442)
T ss_pred HHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC-Cc-eEEEECCCCHHHHHHHHHHHHc--CCCCEEEEeeeccceecC
Confidence 12222222 2335566664 57788888888764 55 8999999999999999999975 789999999999999999
Q ss_pred C-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCC
Q 003593 526 N-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR 561 (808)
Q Consensus 526 p-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~ 561 (808)
| ++.+|.... ..|...|+||+||.-|.
T Consensus 349 P~~~~~i~~~~---------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 349 PDADVLIILRP---------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCcEEEEeCC---------CCcHHHHHHHhhhhccC
Confidence 8 999999998 77999999999999993
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=2.2e-20 Score=215.61 Aligned_cols=282 Identities=15% Similarity=0.106 Sum_probs=164.9
Q ss_pred EEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHH-cccccccccccccccc----------ccCCeE
Q 003593 298 YHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLV----------PFSNHI 362 (808)
Q Consensus 298 lv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~----------~~~~~i 362 (808)
++.||||||||.+++..+ ..++++||++|+++|+.|+++++++ +|..+.+++|...... ....++
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 467999999999966544 3466899999999999999999986 5777777776543221 123455
Q ss_pred EEee-ecccCCCceeEEEEccchhhhccc---chhHHHH--HHhhcc--ccceeccCCchHHHHHHHHhhh---------
Q 003593 363 ACTV-EMVSTDEMYDVAVIDEIQMMSDAC---RGYAWTR--ALLGLM--ADEIHLCGDPSVLDVVRKICSE--------- 425 (808)
Q Consensus 363 ~~t~-e~l~~~~lv~~vVIDEAh~i~d~~---~g~~~~~--~l~~l~--~~~i~l~~s~~~~~~i~~l~~~--------- 425 (808)
++|. .++.+...+++|||||+|..+..+ .....+. .+.... ...+.+.++|............
T Consensus 81 VGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r 160 (505)
T TIGR00595 81 IGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRR 160 (505)
T ss_pred ECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhh
Confidence 5554 233444458999999999987422 1111121 111111 1222333455433222110000
Q ss_pred c-CCCc-EEEEeeecchh--hhhHHHHHHHHh-hcCCC-CEEEEechh--------------------------------
Q 003593 426 T-GDEL-HEQHYERFKPL--VVEAKTLLGDLR-NVRSG-DCVVAFSRR-------------------------------- 467 (808)
Q Consensus 426 ~-~~~~-~~~~~~r~~~~--~~~~~~ll~~l~-~~~~g-~~II~fsrk-------------------------------- 467 (808)
. +... .+...+..... ..-...+++.+. ....| .++||.+|+
T Consensus 161 ~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~ 240 (505)
T TIGR00595 161 VSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGK 240 (505)
T ss_pred hcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCe
Confidence 0 0000 11111100000 000123444442 23333 344443221
Q ss_pred -----------------------------HHHHHHHHHHHhc-CCeEEEEcCCCCHHHH--HHHHHHHhcCCCCeeEEEE
Q 003593 468 -----------------------------EIFEVKMAIEKHT-NHHCCVIYGALPPETR--RQQANLFNDQDNEFDVLVA 515 (808)
Q Consensus 468 -----------------------------~~~~l~~~L~~~~-g~~v~~lhg~l~~~~R--~~~~~~F~~~~g~~~ILVA 515 (808)
.++.+...|.+.. +.++..+|++++...+ +.+++.|++ |+.+|||+
T Consensus 241 l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~ILVg 318 (505)
T TIGR00595 241 LRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADILIG 318 (505)
T ss_pred EEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEEEe
Confidence 1466667776643 5789999999987766 899999965 99999999
Q ss_pred CCCCccccccC-ccEEEE--eCCccC-CCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEe-cCCHHHHHHH
Q 003593 516 SDAVGMGLNLN-IRRVVF--YSLSKY-NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN-LDDLDYLIEC 584 (808)
Q Consensus 516 Tda~~~GIDip-V~~VI~--~~~~K~-dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~-~~d~~~l~~~ 584 (808)
|+++++|+|+| |++|+. +|..-+ ...+..-.....|+|++|||||.+. .|.++... .++...+...
T Consensus 319 T~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~---~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 319 TQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAED---PGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred CcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCC---CCEEEEEeCCCCCHHHHHH
Confidence 99999999998 999864 443111 0001111246789999999999998 79888543 4444444333
No 94
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=5.9e-20 Score=219.26 Aligned_cols=293 Identities=15% Similarity=0.153 Sum_probs=171.5
Q ss_pred hhHHHhC---CCeEEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHH-cccccccccccccccc--
Q 003593 287 PFARVMK---RKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLV-- 356 (808)
Q Consensus 287 ~i~~~l~---grdvlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~-- 356 (808)
.+..+.. ++++++.||||||||.+++.++ ..++++||++|+++|+.|+++++++ +|..+.+++|......
T Consensus 152 ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~ 231 (679)
T PRK05580 152 AVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERL 231 (679)
T ss_pred HHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 3444444 5789999999999999976554 3466899999999999999999987 5777777776643211
Q ss_pred --------ccCCeEEEeee-cccCCCceeEEEEccchhhhcccc-h--hHHHHH--HhhccccceeccCC--chHHHHHH
Q 003593 357 --------PFSNHIACTVE-MVSTDEMYDVAVIDEIQMMSDACR-G--YAWTRA--LLGLMADEIHLCGD--PSVLDVVR 420 (808)
Q Consensus 357 --------~~~~~i~~t~e-~l~~~~lv~~vVIDEAh~i~d~~~-g--~~~~~~--l~~l~~~~i~l~~s--~~~~~~i~ 420 (808)
....++++|.. ++.+-..+++|||||+|..+..+. + ...+.+ +.........++++ |.......
T Consensus 232 ~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~ 311 (679)
T PRK05580 232 DEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLAN 311 (679)
T ss_pred HHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHH
Confidence 12345666653 333344489999999998764221 1 112222 12222223333333 33222211
Q ss_pred HH---------hhhcC-CCc-EEEEeeecchhh-----hhHHHHHHHHhh-cCCCC-EEEEech----------------
Q 003593 421 KI---------CSETG-DEL-HEQHYERFKPLV-----VEAKTLLGDLRN-VRSGD-CVVAFSR---------------- 466 (808)
Q Consensus 421 ~l---------~~~~~-~~~-~~~~~~r~~~~~-----~~~~~ll~~l~~-~~~g~-~II~fsr---------------- 466 (808)
-. ..... ... .+...+...... .-...++..+.+ ...|. .+||..|
T Consensus 312 ~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~ 391 (679)
T PRK05580 312 AQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVA 391 (679)
T ss_pred HhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCcc
Confidence 00 00000 000 011111000000 001223333322 22332 3333222
Q ss_pred ---------------------------------------------hHHHHHHHHHHHh-cCCeEEEEcCCCC--HHHHHH
Q 003593 467 ---------------------------------------------REIFEVKMAIEKH-TNHHCCVIYGALP--PETRRQ 498 (808)
Q Consensus 467 ---------------------------------------------k~~~~l~~~L~~~-~g~~v~~lhg~l~--~~~R~~ 498 (808)
..++.+...|.+. .+.++..+|+++. .+++++
T Consensus 392 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~ 471 (679)
T PRK05580 392 ECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQ 471 (679)
T ss_pred CCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHH
Confidence 2355666677654 3678999999987 467999
Q ss_pred HHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc--C-CCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEe
Q 003593 499 QANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK--Y-NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 499 ~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K--~-dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~ 574 (808)
+++.|++ |+.+|||+|+++++|+|+| |.+|+..+... + .+.+..-.....|+|++|||||.+. .|.|+...
T Consensus 472 ~l~~f~~--g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~---~g~viiqT 546 (679)
T PRK05580 472 LLAQFAR--GEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEK---PGEVLIQT 546 (679)
T ss_pred HHHHHhc--CCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCC---CCEEEEEe
Confidence 9999965 9999999999999999998 99996555411 1 0001111245789999999999998 89999765
Q ss_pred -cCCHHHHHHH
Q 003593 575 -LDDLDYLIEC 584 (808)
Q Consensus 575 -~~d~~~l~~~ 584 (808)
.++...+..+
T Consensus 547 ~~p~~~~~~~~ 557 (679)
T PRK05580 547 YHPEHPVIQAL 557 (679)
T ss_pred CCCCCHHHHHH
Confidence 3443333333
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=1.2e-19 Score=206.73 Aligned_cols=260 Identities=18% Similarity=0.229 Sum_probs=180.2
Q ss_pred EEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHHc----cccccccccccccccc----------c
Q 003593 297 IYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTGQEKKLVP----------F 358 (808)
Q Consensus 297 vlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~~----g~~~~l~~g~~~~~~~----------~ 358 (808)
=++.|.-|||||++++.++ ..+.++...+||-.||.|.++.+.++ |+.+.+++|...+... .
T Consensus 286 RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~ 365 (677)
T COG1200 286 RLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE 365 (677)
T ss_pred HHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC
Confidence 3567788999999954443 34668999999999999999988765 7778888888766432 2
Q ss_pred CCeEEEeeecccCCC---ceeEEEEccchhhhcccchhHHHHHHhhccc---cceeccCCchHHHHHHHHhh--------
Q 003593 359 SNHIACTVEMVSTDE---MYDVAVIDEIQMMSDACRGYAWTRALLGLMA---DEIHLCGDPSVLDVVRKICS-------- 424 (808)
Q Consensus 359 ~~~i~~t~e~l~~~~---lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~---~~i~l~~s~~~~~~i~~l~~-------- 424 (808)
...++.|--++.... .+.++||||=|+ ||-.-|..+..-.. ....++++|-...+.-..-.
T Consensus 366 ~~ivVGTHALiQd~V~F~~LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id 440 (677)
T COG1200 366 IDIVVGTHALIQDKVEFHNLGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID 440 (677)
T ss_pred CCEEEEcchhhhcceeecceeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc
Confidence 345666655544321 279999999999 45566666655444 22333444422222211111
Q ss_pred h--cCCCcEEEEeeecchhhhhHHHHHHHH-hhcCCCCEEEEec-h---------hHHHHHHHHHHHhc-CCeEEEEcCC
Q 003593 425 E--TGDELHEQHYERFKPLVVEAKTLLGDL-RNVRSGDCVVAFS-R---------REIFEVKMAIEKHT-NHHCCVIYGA 490 (808)
Q Consensus 425 ~--~~~~~~~~~~~r~~~~~~~~~~ll~~l-~~~~~g~~II~fs-r---------k~~~~l~~~L~~~~-g~~v~~lhg~ 490 (808)
. .+...+....-.. .....+++.+ .....|..+|+.| . +.+.+++..|.... ++++..+||.
T Consensus 441 ElP~GRkpI~T~~i~~----~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGr 516 (677)
T COG1200 441 ELPPGRKPITTVVIPH----ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGR 516 (677)
T ss_pred cCCCCCCceEEEEecc----ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecC
Confidence 1 1222222222111 1122344444 3334566555543 1 35777777777543 5679999999
Q ss_pred CCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceE
Q 003593 491 LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGL 569 (808)
Q Consensus 491 l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ 569 (808)
|++++++.++++|++ |+++|||||.+++.|||+| ....|..+..+| -.++..|-.||+||.+. .++
T Consensus 517 m~~~eKd~vM~~Fk~--~e~~ILVaTTVIEVGVdVPnATvMVIe~AERF--------GLaQLHQLRGRVGRG~~---qSy 583 (677)
T COG1200 517 MKPAEKDAVMEAFKE--GEIDILVATTVIEVGVDVPNATVMVIENAERF--------GLAQLHQLRGRVGRGDL---QSY 583 (677)
T ss_pred CChHHHHHHHHHHHc--CCCcEEEEeeEEEecccCCCCeEEEEechhhh--------hHHHHHHhccccCCCCc---ceE
Confidence 999999999999975 9999999999999999998 999999998655 89999999999999998 899
Q ss_pred EEEEecCCH
Q 003593 570 TTTLNLDDL 578 (808)
Q Consensus 570 ~i~l~~~d~ 578 (808)
|++++.+..
T Consensus 584 C~Ll~~~~~ 592 (677)
T COG1200 584 CVLLYKPPL 592 (677)
T ss_pred EEEEeCCCC
Confidence 999997654
No 96
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.84 E-value=1.1e-19 Score=214.99 Aligned_cols=363 Identities=17% Similarity=0.206 Sum_probs=220.7
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHHHhc------CcEEEEc-ccHHHHHHHHHHHHHc-ccccccccccccccc----cc
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRFMEA------KKGIYCS-PLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLV----PF 358 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L~~~------~~~lvl~-Ptr~La~Qi~~~l~~~-g~~~~l~~g~~~~~~----~~ 358 (808)
+.++..++++|.||+|||++..+.+++. ..-|||+ |+|.-|..+++++... |-.++-.+|..++.. ..
T Consensus 185 i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~ 264 (924)
T KOG0920|consen 185 IEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRSRE 264 (924)
T ss_pred HHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccCCc
Confidence 4788999999999999999977777652 2336666 9999999999999754 555555555554422 23
Q ss_pred CCeEEEeeecc----cCC---CceeEEEEccchhhhcc-cchhHHHHHHhhccccceeccCCchHH--------------
Q 003593 359 SNHIACTVEMV----STD---EMYDVAVIDEIQMMSDA-CRGYAWTRALLGLMADEIHLCGDPSVL-------------- 416 (808)
Q Consensus 359 ~~~i~~t~e~l----~~~---~lv~~vVIDEAh~i~d~-~~g~~~~~~l~~l~~~~i~l~~s~~~~-------------- 416 (808)
....+||..++ ... ..+.++|+||+|...-. +|--...+.++...+.-..++.++|..
T Consensus 265 t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi 344 (924)
T KOG0920|consen 265 TRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVI 344 (924)
T ss_pred eeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHhCCCceE
Confidence 45667775322 222 22899999999998632 222222222222222211122222211
Q ss_pred -----------HHHHHHhhhcCCCcE--EEEe-eecc----------hhhhhH---HHHHHHHhhcC-CCCEEEEec-hh
Q 003593 417 -----------DVVRKICSETGDELH--EQHY-ERFK----------PLVVEA---KTLLGDLRNVR-SGDCVVAFS-RR 467 (808)
Q Consensus 417 -----------~~i~~l~~~~~~~~~--~~~~-~r~~----------~~~~~~---~~ll~~l~~~~-~g~~II~fs-rk 467 (808)
-..++++..+..... .+.. .... ...++. ..++..+-... .|.++||.. -.
T Consensus 345 ~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~ 424 (924)
T KOG0920|consen 345 TIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWE 424 (924)
T ss_pred eecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHH
Confidence 111111111110000 0000 0000 000111 23444443333 454555554 58
Q ss_pred HHHHHHHHHHHh------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCcc---
Q 003593 468 EIFEVKMAIEKH------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK--- 537 (808)
Q Consensus 468 ~~~~l~~~L~~~------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K--- 537 (808)
++..++..|... ..+-+.++|+.|+.+++..++... +.|..+||+||++++.+|.|| |-+||+.+..|
T Consensus 425 eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p--p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~ 502 (924)
T KOG0920|consen 425 EILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP--PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKS 502 (924)
T ss_pred HHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC--CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeee
Confidence 888888888642 135688999999999999999999 779999999999999999996 99999999875
Q ss_pred CCCC------ccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHhc-CCchhhHHhCCCCcHHHHHHHHhh
Q 003593 538 YNGD------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK-QPFEVVKKVGLFPFFEQVELFAGQ 610 (808)
Q Consensus 538 ~dg~------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 610 (808)
||.. ...|.|.+...||.|||||.-. |.||.+|+... ...++. ...+++.+..+.....+++.
T Consensus 503 yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~----G~cy~L~~~~~--~~~~~~~~q~PEilR~pL~~l~L~iK~---- 572 (924)
T KOG0920|consen 503 YDPERKVSCLLLSWVSKANAKQRRGRAGRVRP----GICYHLYTRSR--YEKLMLAYQLPEILRTPLEELCLHIKV---- 572 (924)
T ss_pred ecccCCcchhheeeccccchHHhcccccCccC----CeeEEeechhh--hhhcccccCChHHHhChHHHhhheeee----
Confidence 6654 5678899999999999999986 99999997642 223333 56666666553222222220
Q ss_pred cccccHHHHHHHHHhhcccCCCcccCCcchHHHHHHHHHHhcCCChhhhhh-----hcCCCCCCCchHH
Q 003593 611 LSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFN-----FCFAPVNIRDPKA 674 (808)
Q Consensus 611 ~~~~~~~~ll~~f~e~~~~~~~~~~c~~~~~~~~a~~l~~~~~l~~~d~~~-----~c~~p~~~~~~~~ 674 (808)
+..-... .++..... ....+.+......|..+++|+-.+..+ .+.-|++.+-.|.
T Consensus 573 l~~~~~~---~fLskald------pP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ 632 (924)
T KOG0920|consen 573 LEQGSIK---AFLSKALD------PPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKL 632 (924)
T ss_pred ccCCCHH---HHHHHhcC------CCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchh
Confidence 1111112 22222221 334566777778888888887777544 3556777765443
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=7.9e-19 Score=209.90 Aligned_cols=260 Identities=22% Similarity=0.325 Sum_probs=179.5
Q ss_pred eEEEEecCCCcHHHHHH----HHHHhcCcEEEEcccHHHHHHHHHHHHHc----ccccccccc----ccccc------cc
Q 003593 296 IIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTG----QEKKL------VP 357 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L----~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~----g~~~~l~~g----~~~~~------~~ 357 (808)
|=++||--|.|||-+++ .++..++++.|++||-.||+|.++.+++. .+.+..+.. .+... ..
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G 696 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEG 696 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcC
Confidence 77899999999999854 45567889999999999999999988764 344433322 22111 11
Q ss_pred cCCeEEEeeecccCCCc---eeEEEEccchhhhcccchhHHHHHHhhcccc--ceeccCCch--HHHH----HHHHh---
Q 003593 358 FSNHIACTVEMVSTDEM---YDVAVIDEIQMMSDACRGYAWTRALLGLMAD--EIHLCGDPS--VLDV----VRKIC--- 423 (808)
Q Consensus 358 ~~~~i~~t~e~l~~~~l---v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~--~i~l~~s~~--~~~~----i~~l~--- 423 (808)
...+++.|-.+|...-. +.++||||-|+. |-.-...+..+.+. ..+++++|- .... ++.+.
T Consensus 697 ~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~ 771 (1139)
T COG1197 697 KVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRF-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIA 771 (1139)
T ss_pred CccEEEechHhhCCCcEEecCCeEEEechhhc-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhcc
Confidence 34567788877776533 899999999995 44444455555443 233344432 1111 11111
Q ss_pred hhcCCCcEEEEe-eecchhhhhHHHHHHHHhhcCCCCEEEEe-ch-hHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHH
Q 003593 424 SETGDELHEQHY-ERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SR-REIFEVKMAIEKHT-NHHCCVIYGALPPETRRQQ 499 (808)
Q Consensus 424 ~~~~~~~~~~~~-~r~~~~~~~~~~ll~~l~~~~~g~~II~f-sr-k~~~~l~~~L~~~~-g~~v~~lhg~l~~~~R~~~ 499 (808)
.......-++.| ...++..+. ..++..+ ..|+.+++. ++ ..+++++..|.... ..++++.||.|+..+-+.+
T Consensus 772 TPP~~R~pV~T~V~~~d~~~ir-eAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~v 847 (1139)
T COG1197 772 TPPEDRLPVKTFVSEYDDLLIR-EAILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEV 847 (1139)
T ss_pred CCCCCCcceEEEEecCChHHHH-HHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHH
Confidence 111222333333 333333322 3443333 344444444 65 67888888887642 4689999999999999999
Q ss_pred HHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 500 ANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 500 ~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
+..|.+ |+++|||||.+++.||||| ++.+|..+.-+| ..++.+|--||+||... .|+||.++.++
T Consensus 848 M~~F~~--g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f--------GLsQLyQLRGRVGRS~~---~AYAYfl~p~~ 913 (1139)
T COG1197 848 MLDFYN--GEYDVLVCTTIIETGIDIPNANTIIIERADKF--------GLAQLYQLRGRVGRSNK---QAYAYFLYPPQ 913 (1139)
T ss_pred HHHHHc--CCCCEEEEeeeeecCcCCCCCceEEEeccccc--------cHHHHHHhccccCCccc---eEEEEEeecCc
Confidence 999965 9999999999999999998 999998887554 88999999999999999 89999999754
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.83 E-value=1.8e-19 Score=217.18 Aligned_cols=268 Identities=18% Similarity=0.231 Sum_probs=159.2
Q ss_pred CCcchhhhHHH--hCCCeEEEEecCCCcHHHHHHHHHH---hc---CcEEEEcccHHHHHHHHHHHHHc-----c-cccc
Q 003593 281 KPHTWFPFARV--MKRKIIYHCGPTNSGKTYNALQRFM---EA---KKGIYCSPLRLLAMEVFDKVNAL-----G-VYCS 346 (808)
Q Consensus 281 ~pt~~~~i~~~--l~grdvlv~apTGSGKTl~~L~~L~---~~---~~~lvl~Ptr~La~Qi~~~l~~~-----g-~~~~ 346 (808)
.|.|.|..... ..+..+++.||||+|||.++|.+.. .. .+++|..||+++++++++++.+. + ..+.
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~ 365 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLI 365 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 56666543322 2466799999999999999665432 22 36677789999999999998752 1 1233
Q ss_pred cccccccc---------------------------------ccccCCeEEEeeeccc-----CC----Cc----eeEEEE
Q 003593 347 LLTGQEKK---------------------------------LVPFSNHIACTVEMVS-----TD----EM----YDVAVI 380 (808)
Q Consensus 347 l~~g~~~~---------------------------------~~~~~~~i~~t~e~l~-----~~----~l----v~~vVI 380 (808)
+.+|...- ..-.++.+++|+..+- .. +. -++|||
T Consensus 366 L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIi 445 (878)
T PRK09694 366 LAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIV 445 (878)
T ss_pred eecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEE
Confidence 33332110 0012567778874331 11 11 358999
Q ss_pred ccchhhhcccchhHHHHHHhhcc---ccceeccCCchHHHHH-HHHhhhcCC----------CcE-------EEEee---
Q 003593 381 DEIQMMSDACRGYAWTRALLGLM---ADEIHLCGDPSVLDVV-RKICSETGD----------ELH-------EQHYE--- 436 (808)
Q Consensus 381 DEAh~i~d~~~g~~~~~~l~~l~---~~~i~l~~s~~~~~~i-~~l~~~~~~----------~~~-------~~~~~--- 436 (808)
||+|.+-. .....+...+..+. ...+.+ ++|..... ..+....+. ..+ ...+.
T Consensus 446 DEVHAyD~-ym~~lL~~~L~~l~~~g~~vIll--SATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 446 DEVHAYDA-YMYGLLEAVLKAQAQAGGSVILL--SATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred echhhCCH-HHHHHHHHHHHHHHhcCCcEEEE--eCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 99999843 12223333333322 222223 33322111 112111000 000 00000
Q ss_pred -----------ecchhh----hhHHHHHHHHh-hcCCCCE-EEEe-chhHHHHHHHHHHHhcC--CeEEEEcCCCCHHHH
Q 003593 437 -----------RFKPLV----VEAKTLLGDLR-NVRSGDC-VVAF-SRREIFEVKMAIEKHTN--HHCCVIYGALPPETR 496 (808)
Q Consensus 437 -----------r~~~~~----~~~~~ll~~l~-~~~~g~~-II~f-srk~~~~l~~~L~~~~g--~~v~~lhg~l~~~~R 496 (808)
.+.... .....+++.+. ....|.+ +||+ +.+.+.+++..|.+..+ ..+..+||.+++.+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 000000 01123334442 2344544 4444 56899999999987532 579999999999999
Q ss_pred ----HHHHHHHhcCCCC---eeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCC
Q 003593 497 ----RQQANLFNDQDNE---FDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (808)
Q Consensus 497 ----~~~~~~F~~~~g~---~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (808)
.++++.|.. +|+ ..|||||+++++||||+++.||.... | ++.++||+||+||.+.
T Consensus 603 ~~~E~~vl~~fgk-~g~r~~~~ILVaTQViE~GLDId~DvlItdla---------P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 603 REKEQRVIENFGK-NGKRNQGRILVATQVVEQSLDLDFDWLITQLC---------P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHh-cCCcCCCeEEEECcchhheeecCCCeEEECCC---------C--HHHHHHHHhccCCCCC
Confidence 456778842 355 47999999999999999999998766 5 7899999999999986
No 99
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.7e-19 Score=195.02 Aligned_cols=330 Identities=21% Similarity=0.250 Sum_probs=197.3
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEc-ccHHHHHHHHHHHHHc-cccccccccccccccc----cCCe
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCS-PLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLVP----FSNH 361 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~-Ptr~La~Qi~~~l~~~-g~~~~l~~g~~~~~~~----~~~~ 361 (808)
..++.++++|.||||||+++.++.+ ...+++.|+ |.|..|.+++.++... .+..+--.|..++... ....
T Consensus 60 ~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L 139 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL 139 (699)
T ss_pred hcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHH
Confidence 7889999999999999999555443 334566666 9999999999998763 3333222233222111 1112
Q ss_pred EEEeeec-----ccCCCc--eeEEEEccchhhhcccchhHHHHHHhhcccc--------ceeccCCchHHHHHHHHhh--
Q 003593 362 IACTVEM-----VSTDEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMAD--------EIHLCGDPSVLDVVRKICS-- 424 (808)
Q Consensus 362 i~~t~e~-----l~~~~l--v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~--------~i~l~~s~~~~~~i~~l~~-- 424 (808)
-+||-.| ++..-+ +++||+||||... .-+.++.|+... ++.++..+-.......+-.
T Consensus 140 ky~tDgmLlrEams~p~l~~y~viiLDeahERt------lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~ 213 (699)
T KOG0925|consen 140 KYCTDGMLLREAMSDPLLGRYGVIILDEAHERT------LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNA 213 (699)
T ss_pred HHhcchHHHHHHhhCcccccccEEEechhhhhh------HHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCC
Confidence 2355433 333322 8999999999986 335566665432 2333332221211111111
Q ss_pred ----hcCCCcEEEEee-ecchhhh--hHHHHHHHHhhcCCCCEEEEec-hhHHHHHHHHHHHh--------cCCeEEEEc
Q 003593 425 ----ETGDELHEQHYE-RFKPLVV--EAKTLLGDLRNVRSGDCVVAFS-RREIFEVKMAIEKH--------TNHHCCVIY 488 (808)
Q Consensus 425 ----~~~~~~~~~~~~-r~~~~~~--~~~~ll~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~--------~g~~v~~lh 488 (808)
..+...+...|. ...+... ..+.++++.....+|++++|.+ ..++++.++.+..+ ...+|.++|
T Consensus 214 Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy 293 (699)
T KOG0925|consen 214 PLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY 293 (699)
T ss_pred CeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC
Confidence 111111112221 1111122 2246777777778999999996 56666666666532 236889999
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCeeEEEECCCCccccccC-ccEEEEeCCcc---CCCC------ccccCCHhHHHHHh
Q 003593 489 GALPPETRRQQANLFND---QDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSK---YNGD------KIIPVPGSQVKQIA 555 (808)
Q Consensus 489 g~l~~~~R~~~~~~F~~---~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K---~dg~------~~~P~s~~~y~Qr~ 555 (808)
|.++.++++---. ..-..+|+|+|++++..+.+| |.+||+-+..| ||.+ -..|.|..+..||+
T Consensus 294 ----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~ 369 (699)
T KOG0925|consen 294 ----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 369 (699)
T ss_pred ----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHh
Confidence 4444444433211 112478999999999999998 99999999875 7766 57899999999999
Q ss_pred CccCCCCCCCCceEEEEEecCCHHHHHHHhcCCchhhHHhCCCCcHHHHHHHHhhcccccHHHHHHHHHhhcccCCCccc
Q 003593 556 GRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFL 635 (808)
Q Consensus 556 GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~e~~~~~~~~~~ 635 (808)
|||||... |.|++||++. ..-.++...+-+++.+..+.....+++..- ...-..|..
T Consensus 370 gragrt~p----GkcfrLYte~-~~~~em~~~typeilrsNL~s~VL~LKklg------------------I~dlvhfdf 426 (699)
T KOG0925|consen 370 GRAGRTRP----GKCFRLYTEE-AFEKEMQPQTYPEILRSNLSSTVLQLKKLG------------------IDDLVHFDF 426 (699)
T ss_pred hhccCCCC----CceEEeecHH-hhhhcCCCCCcHHHHHHhhHHHHHHHHhcC------------------cccccCCcC
Confidence 99999886 9999999864 222344444555555444322222222211 011123444
Q ss_pred CCcchHHHHHHHHHHhcCC
Q 003593 636 CRHDHIKKVANMLEKVQGL 654 (808)
Q Consensus 636 c~~~~~~~~a~~l~~~~~l 654 (808)
-+.+.-..++++|+.+..|
T Consensus 427 mDpPAPEtLMrALE~LnYL 445 (699)
T KOG0925|consen 427 MDPPAPETLMRALEVLNYL 445 (699)
T ss_pred CCCCChHHHHHHHHHhhhh
Confidence 5555666777777766544
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=2.9e-19 Score=207.40 Aligned_cols=308 Identities=20% Similarity=0.283 Sum_probs=201.1
Q ss_pred HHHCCCCCCcchh----hhHHHhCCCeEEEEecCCCcHHHHH----HH-HHHhcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 274 IESADLTKPHTWF----PFARVMKRKIIYHCGPTNSGKTYNA----LQ-RFMEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 274 l~~~g~~~pt~~~----~i~~~l~grdvlv~apTGSGKTl~~----L~-~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.+..|....+.|| ..++++.+++.|..+||+.|||+++ +. .|.....++.+.|..+-+++-...+..+..+
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~ 295 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSID 295 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccc
Confidence 3466777777775 4467789999999999999999992 22 2345667888889999888888888877665
Q ss_pred ccccccccccccc------cCCeEEEeeecccC--------CCc--eeEEEEccchhhhcccchhHHHHHHhhcc----c
Q 003593 345 CSLLTGQEKKLVP------FSNHIACTVEMVST--------DEM--YDVAVIDEIQMMSDACRGYAWTRALLGLM----A 404 (808)
Q Consensus 345 ~~l~~g~~~~~~~------~~~~i~~t~e~l~~--------~~l--v~~vVIDEAh~i~d~~~g~~~~~~l~~l~----~ 404 (808)
.++...+..+..+ .....+||+|+... +++ +.+|||||-|++.|.++|...+.++..+. .
T Consensus 296 ~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~ 375 (1008)
T KOG0950|consen 296 LGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE 375 (1008)
T ss_pred cCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc
Confidence 5544333322221 22345688876532 333 89999999999999999999886664331 1
Q ss_pred cceeccC-CchHHHHHHHHhhhcCCCcEEEEeeecchh-----------hhhHHHHHHHHh-------------------
Q 003593 405 DEIHLCG-DPSVLDVVRKICSETGDELHEQHYERFKPL-----------VVEAKTLLGDLR------------------- 453 (808)
Q Consensus 405 ~~i~l~~-s~~~~~~i~~l~~~~~~~~~~~~~~r~~~~-----------~~~~~~ll~~l~------------------- 453 (808)
..+..++ +++. ..+..+..+....+....| |+.++ ......++..+.
T Consensus 376 ~~~~iIGMSATi-~N~~lL~~~L~A~~y~t~f-RPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~ 453 (1008)
T KOG0950|consen 376 TSVQIIGMSATI-PNNSLLQDWLDAFVYTTRF-RPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLC 453 (1008)
T ss_pred cceeEeeeeccc-CChHHHHHHhhhhheeccc-CcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeeh
Confidence 2222333 3322 2222233333322222222 11111 010111211111
Q ss_pred --hcCCCC-EEEEe-chhHHHHHHHHHHHh-------------------------------------cCCeEEEEcCCCC
Q 003593 454 --NVRSGD-CVVAF-SRREIFEVKMAIEKH-------------------------------------TNHHCCVIYGALP 492 (808)
Q Consensus 454 --~~~~g~-~II~f-srk~~~~l~~~L~~~-------------------------------------~g~~v~~lhg~l~ 492 (808)
....+. +++|+ +++.|+.++..+... ..+.++++|+|++
T Consensus 454 tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT 533 (1008)
T KOG0950|consen 454 TETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLT 533 (1008)
T ss_pred hhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccc
Confidence 112333 56666 577777666544211 3357889999999
Q ss_pred HHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEE
Q 003593 493 PETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572 (808)
Q Consensus 493 ~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~ 572 (808)
.++|+.+...|++ |.+.|++||+.++.|+|.|+++||.-.+ ++-+. ..+.-+|.|++|||||+|- ...|.+++
T Consensus 534 ~eER~~iE~afr~--g~i~vl~aTSTlaaGVNLPArRVIiraP-~~g~~---~l~~~~YkQM~GRAGR~gi-dT~GdsiL 606 (1008)
T KOG0950|consen 534 SEEREIIEAAFRE--GNIFVLVATSTLAAGVNLPARRVIIRAP-YVGRE---FLTRLEYKQMVGRAGRTGI-DTLGDSIL 606 (1008)
T ss_pred cchHHHHHHHHHh--cCeEEEEecchhhccCcCCcceeEEeCC-ccccc---hhhhhhHHhhhhhhhhccc-ccCcceEE
Confidence 9999999999976 9999999999999999999999988654 33333 6788999999999999997 45899999
Q ss_pred EecCC-HHHHHHHhcCCch
Q 003593 573 LNLDD-LDYLIECLKQPFE 590 (808)
Q Consensus 573 l~~~d-~~~l~~~l~~~~~ 590 (808)
.+.+. .....+++..+.+
T Consensus 607 I~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 607 IIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred EeeccchhHHHHHHhcccc
Confidence 98654 4444566655544
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.77 E-value=3.4e-17 Score=202.76 Aligned_cols=257 Identities=17% Similarity=0.164 Sum_probs=156.9
Q ss_pred CCeEEEEecCCCcHHHHHH---HHHHh---cCcEEEEcccHHHHHHHHHHHHHcccccc-----ccccc---cccccccC
Q 003593 294 RKIIYHCGPTNSGKTYNAL---QRFME---AKKGIYCSPLRLLAMEVFDKVNALGVYCS-----LLTGQ---EKKLVPFS 359 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L---~~L~~---~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~-----l~~g~---~~~~~~~~ 359 (808)
.+.+++++|||||||..++ ..++. .+++|+|+|+++|+.|..+.+..++.... +.+.. ........
T Consensus 433 ~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~ 512 (1123)
T PRK11448 433 QREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLEDKFPEDET 512 (1123)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhhhcccCCC
Confidence 4689999999999998733 33333 35899999999999999999998765433 11111 11111234
Q ss_pred CeEEEeeeccc-------------CCCceeEEEEccchhhhc---------cc------chhHHHHHHhhccccceeccC
Q 003593 360 NHIACTVEMVS-------------TDEMYDVAVIDEIQMMSD---------AC------RGYAWTRALLGLMADEIHLCG 411 (808)
Q Consensus 360 ~~i~~t~e~l~-------------~~~lv~~vVIDEAh~i~d---------~~------~g~~~~~~l~~l~~~~i~l~~ 411 (808)
.++++|+..+. +...+++|||||||+... .+ +...|+.++....+..+-+++
T Consensus 513 ~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTA 592 (1123)
T PRK11448 513 KVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTA 592 (1123)
T ss_pred CEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEec
Confidence 56677764321 112288999999999531 11 124566666544455555666
Q ss_pred CchHHH------------HHHHHhhhcCC----CcE-EEE----------------eee----cc----hhhh--h----
Q 003593 412 DPSVLD------------VVRKICSETGD----ELH-EQH----------------YER----FK----PLVV--E---- 444 (808)
Q Consensus 412 s~~~~~------------~i~~l~~~~~~----~~~-~~~----------------~~r----~~----~~~~--~---- 444 (808)
+|.... +.+.+...... ... ... ++. .. +..+ .
T Consensus 593 TP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~ 672 (1123)
T PRK11448 593 TPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDF 672 (1123)
T ss_pred CCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHH
Confidence 653110 00111111000 000 000 000 00 0000 0
Q ss_pred ---------H----HHHHHHHhhcCCCCEEEEe-chhHHHHHHHHHHHhc-----C---CeEEEEcCCCCHHHHHHHHHH
Q 003593 445 ---------A----KTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKHT-----N---HHCCVIYGALPPETRRQQANL 502 (808)
Q Consensus 445 ---------~----~~ll~~l~~~~~g~~II~f-srk~~~~l~~~L~~~~-----g---~~v~~lhg~l~~~~R~~~~~~ 502 (808)
. +.++..+....+++.|||| ++..+..++..|.+.. + ..+..+||+.+ ++..++++
T Consensus 673 ~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~ 750 (1123)
T PRK11448 673 NRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRR 750 (1123)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHH
Confidence 0 1122223223456788888 4567777777665421 2 25677999986 56789999
Q ss_pred HhcCCCCe-eEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCC
Q 003593 503 FNDQDNEF-DVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (808)
Q Consensus 503 F~~~~g~~-~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (808)
|++ +.. .|+|+++++.+|+|+| |.+||++.+ +.|...|+|++||+.|-..
T Consensus 751 Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp---------vkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 751 FKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRR---------VRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred HhC--CCCCeEEEEecccccCCCcccccEEEEecC---------CCCHHHHHHHHhhhccCCc
Confidence 975 665 7999999999999998 999999999 8899999999999999643
No 102
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2e-17 Score=195.15 Aligned_cols=120 Identities=14% Similarity=0.188 Sum_probs=97.2
Q ss_pred HHHHHHhh-cCCCC-EEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRN-VRSGD-CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~-~~~g~-~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+.. +..+. ++|++ |...++.++..|.+. |+++..+||++...++..+..+++ .|. |+||||++|||+
T Consensus 428 al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~-gi~~~~Lna~~~~~Ea~ii~~ag~--~g~--VtIATnmAGRGt 502 (796)
T PRK12906 428 AVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA-GIPHAVLNAKNHAKEAEIIMNAGQ--RGA--VTIATNMAGRGT 502 (796)
T ss_pred HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC-CCCeeEecCCcHHHHHHHHHhcCC--Cce--EEEEeccccCCC
Confidence 45555532 23444 45555 457888888888875 999999999999888888888884 354 999999999999
Q ss_pred cc---C-cc-----EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 524 NL---N-IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 524 Di---p-V~-----~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
|| + |. +||++++ |.|...|.|+.|||||.|. +|.+..|++-++.-++.
T Consensus 503 DI~l~~~V~~~GGLhVI~te~---------pes~ri~~Ql~GRtGRqG~---~G~s~~~~sleD~l~~~ 559 (796)
T PRK12906 503 DIKLGPGVKELGGLAVIGTER---------HESRRIDNQLRGRSGRQGD---PGSSRFYLSLEDDLMRR 559 (796)
T ss_pred CCCCCcchhhhCCcEEEeeec---------CCcHHHHHHHhhhhccCCC---CcceEEEEeccchHHHh
Confidence 99 3 88 9999999 9999999999999999999 89999999877655544
No 103
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.76 E-value=4.6e-17 Score=170.48 Aligned_cols=280 Identities=18% Similarity=0.243 Sum_probs=179.8
Q ss_pred HHhCCCeEEEEecCCCcHHHHHH----HHHHhcCcEEEEcccHHHHHHHHHHHHHc--cccccccccccccccccCCeEE
Q 003593 290 RVMKRKIIYHCGPTNSGKTYNAL----QRFMEAKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKKLVPFSNHIA 363 (808)
Q Consensus 290 ~~l~grdvlv~apTGSGKTl~~L----~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~--g~~~~l~~g~~~~~~~~~~~i~ 363 (808)
.+-+.+++++.|-||+|||.... .++..++++.+.+|+...+.+++.++++. +..+.++.|+...... ++.++
T Consensus 112 ~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr-~plvV 190 (441)
T COG4098 112 YIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR-APLVV 190 (441)
T ss_pred HHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc-ccEEE
Confidence 34678899999999999998833 33445667778889999999999999875 4666777787766555 66666
Q ss_pred Eee-ecccCCCceeEEEEccchhhhc---ccchhHHHHHHhhccccceeccCCchHHHHHHHHhhhc-----------CC
Q 003593 364 CTV-EMVSTDEMYDVAVIDEIQMMSD---ACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKICSET-----------GD 428 (808)
Q Consensus 364 ~t~-e~l~~~~lv~~vVIDEAh~i~d---~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~-----------~~ 428 (808)
+|. .++....-+|++||||+|...- .....+...+... ....+.++++|+ .++.+++.... +.
T Consensus 191 aTtHQLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~-~g~~IylTATp~-k~l~r~~~~g~~~~~klp~RfH~~ 268 (441)
T COG4098 191 ATTHQLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK-EGATIYLTATPT-KKLERKILKGNLRILKLPARFHGK 268 (441)
T ss_pred EehHHHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcc-cCceEEEecCCh-HHHHHHhhhCCeeEeecchhhcCC
Confidence 664 4555445599999999998741 1111122222211 223456666664 22222222211 11
Q ss_pred CcEEEEeeecchhhhh--H----HHHHHHHhhcC-C-CCEEEEec-hhHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHH
Q 003593 429 ELHEQHYERFKPLVVE--A----KTLLGDLRNVR-S-GDCVVAFS-RREIFEVKMAIEKHTN-HHCCVIYGALPPETRRQ 498 (808)
Q Consensus 429 ~~~~~~~~r~~~~~~~--~----~~ll~~l~~~~-~-g~~II~fs-rk~~~~l~~~L~~~~g-~~v~~lhg~l~~~~R~~ 498 (808)
.+.+-.|....+.... . ..+...+.+.. . ...+|||. -...++++..|.+..+ ..++.+|+.- ..|.+
T Consensus 269 pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~E 346 (441)
T COG4098 269 PLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKE 346 (441)
T ss_pred CCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHH
Confidence 1111111111111100 0 14555554333 2 34566775 4667778888854333 4568888864 57889
Q ss_pred HHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 499 QANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 499 ~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
..++|++ |+.++||+|.+++||+.+| |+.+|.-.-. +-.+-++.+|++||+||.-. .|.|.++.|...-
T Consensus 347 kV~~fR~--G~~~lLiTTTILERGVTfp~vdV~Vlgaeh-------~vfTesaLVQIaGRvGRs~~-~PtGdv~FFH~G~ 416 (441)
T COG4098 347 KVEAFRD--GKITLLITTTILERGVTFPNVDVFVLGAEH-------RVFTESALVQIAGRVGRSLE-RPTGDVLFFHYGK 416 (441)
T ss_pred HHHHHHc--CceEEEEEeehhhcccccccceEEEecCCc-------ccccHHHHHHHhhhccCCCc-CCCCcEEEEeccc
Confidence 9999986 9999999999999999998 8876654321 13588999999999999875 5789999887554
Q ss_pred HHHHHHH
Q 003593 578 LDYLIEC 584 (808)
Q Consensus 578 ~~~l~~~ 584 (808)
...+.++
T Consensus 417 skaM~~A 423 (441)
T COG4098 417 SKAMKQA 423 (441)
T ss_pred hHHHHHH
Confidence 4444433
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=7.7e-16 Score=182.65 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=89.7
Q ss_pred HHHHHh-hcCCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccc
Q 003593 448 LLGDLR-NVRSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLN 524 (808)
Q Consensus 448 ll~~l~-~~~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GID 524 (808)
+++.+. .+..|..+++|| ...++.++..|.+. |+++.++||.+.+.+|..+.++|+. | .|+||||++|||+|
T Consensus 433 v~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~-gi~h~vLnak~~q~Ea~iia~Ag~~--G--~VtIATNmAGRGtD 507 (896)
T PRK13104 433 IIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE-NIKHQVLNAKFHEKEAQIIAEAGRP--G--AVTIATNMAGRGTD 507 (896)
T ss_pred HHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc-CCCeEeecCCCChHHHHHHHhCCCC--C--cEEEeccCccCCcc
Confidence 444442 234555555553 46777788887764 9999999999999999999999964 7 49999999999999
Q ss_pred cCcc---------------------------------------EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCC
Q 003593 525 LNIR---------------------------------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIY 565 (808)
Q Consensus 525 ipV~---------------------------------------~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~ 565 (808)
|-.. +||-... +.|.--=-|-.|||||-|.
T Consensus 508 I~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer---------hesrRID~QLrGRaGRQGD-- 576 (896)
T PRK13104 508 IVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSER---------HESRRIDNQLRGRAGRQGD-- 576 (896)
T ss_pred eecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeecc---------CchHHHHHHhccccccCCC--
Confidence 8543 4444443 6777777899999999998
Q ss_pred CceEEEEEecCCHHHHH
Q 003593 566 PDGLTTTLNLDDLDYLI 582 (808)
Q Consensus 566 ~~G~~i~l~~~d~~~l~ 582 (808)
+|.+-.|++=++..++
T Consensus 577 -PGss~f~lSleD~l~~ 592 (896)
T PRK13104 577 -PGSSRFYLSLEDNLMR 592 (896)
T ss_pred -CCceEEEEEcCcHHHH
Confidence 8999999875554443
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.70 E-value=2e-16 Score=190.85 Aligned_cols=272 Identities=16% Similarity=0.220 Sum_probs=160.8
Q ss_pred CCC-eEEEEecCCCcHHHHHHHHH----Hh----cCcEEEEcccHHHHHHHHHHHHHcccccccccc----cccccccc-
Q 003593 293 KRK-IIYHCGPTNSGKTYNALQRF----ME----AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTG----QEKKLVPF- 358 (808)
Q Consensus 293 ~gr-dvlv~apTGSGKTl~~L~~L----~~----~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g----~~~~~~~~- 358 (808)
... .+++.||||+|||.+.+... .. .++++++.|+|.++.+++++++..+..-.+.++ ........
T Consensus 212 ~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~ 291 (733)
T COG1203 212 KRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLE 291 (733)
T ss_pred cccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhc
Confidence 344 89999999999999943322 22 457899999999999999999975433322222 21110000
Q ss_pred --------------------CCeEEEeeeccc----CCCc-------eeEEEEccchhhhcc-cchhHHHHHHhhccccc
Q 003593 359 --------------------SNHIACTVEMVS----TDEM-------YDVAVIDEIQMMSDA-CRGYAWTRALLGLMADE 406 (808)
Q Consensus 359 --------------------~~~i~~t~e~l~----~~~l-------v~~vVIDEAh~i~d~-~~g~~~~~~l~~l~~~~ 406 (808)
...++++...+. ..+. .+++|+||+|.+.+. .++....-+...-....
T Consensus 292 ~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~ 371 (733)
T COG1203 292 PDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGV 371 (733)
T ss_pred cccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCC
Confidence 011111111111 1110 589999999999986 22222221111111111
Q ss_pred eeccCCchHH----HHHHHHhhhcCCCcEE---------EEeeecchhhhhHH---HHHHH-HhhcCCC--CEEEEechh
Q 003593 407 IHLCGDPSVL----DVVRKICSETGDELHE---------QHYERFKPLVVEAK---TLLGD-LRNVRSG--DCVVAFSRR 467 (808)
Q Consensus 407 i~l~~s~~~~----~~i~~l~~~~~~~~~~---------~~~~r~~~~~~~~~---~ll~~-l~~~~~g--~~II~fsrk 467 (808)
-.++.++|.. +.+............. ....+......... ..... ......+ ..||+.|..
T Consensus 372 ~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~ 451 (733)
T COG1203 372 PVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVD 451 (733)
T ss_pred CEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHH
Confidence 1223333333 3322222211111110 00111111111111 11111 1222222 346666889
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCCeeEEEECCCCccccccCccEEEEeCCccCCCCcccc
Q 003593 468 EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND--QDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIP 545 (808)
Q Consensus 468 ~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~--~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P 545 (808)
.|.+++..|... +..++.+||.+...+|.+.++...+ +.+...|+|||.+++.|+|++.+.+|-- +
T Consensus 452 ~Aie~Y~~Lk~~-~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mITe-----------~ 519 (733)
T COG1203 452 RAIELYEKLKEK-GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLITE-----------L 519 (733)
T ss_pred HHHHHHHHHHhc-CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeeec-----------C
Confidence 999999999875 4479999999999999999986542 2478899999999999999999999875 6
Q ss_pred CCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 546 ~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
.++.+.+||+||++|.|.. ..|.++.+...+
T Consensus 520 aPidSLIQR~GRv~R~g~~-~~~~~~v~~~~~ 550 (733)
T COG1203 520 APIDSLIQRAGRVNRHGKK-ENGKIYVYNDEE 550 (733)
T ss_pred CCHHHHHHHHHHHhhcccc-cCCceeEeeccc
Confidence 6899999999999999931 268888887544
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.1e-15 Score=181.07 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=93.7
Q ss_pred HHHHHHhh-cCCC-CEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRN-VRSG-DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~-~~~g-~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+.. +..| .++||+ |...++.++..|.+. |+++..+||. +.+|+..+..|.. +...|+||||++|||+
T Consensus 418 aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~-gi~~~vLnak--q~eREa~Iia~Ag--~~g~VtIATNmAGRGt 492 (830)
T PRK12904 418 AVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA-GIPHNVLNAK--NHEREAEIIAQAG--RPGAVTIATNMAGRGT 492 (830)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCceEeccCc--hHHHHHHHHHhcC--CCceEEEecccccCCc
Confidence 45555533 2334 455555 457888888888775 9999999996 8899999999964 9999999999999999
Q ss_pred ccCcc---------------------------------------EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCC
Q 003593 524 NLNIR---------------------------------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564 (808)
Q Consensus 524 DipV~---------------------------------------~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~ 564 (808)
||+.. +||-... |.|.--=-|-.|||||-|.
T Consensus 493 DI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTer---------hesrRid~QlrGRagRQGd- 562 (830)
T PRK12904 493 DIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTER---------HESRRIDNQLRGRSGRQGD- 562 (830)
T ss_pred CccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEeccc---------CchHHHHHHhhcccccCCC-
Confidence 99865 5666555 8888888999999999998
Q ss_pred CCceEEEEEecCCHHHHH
Q 003593 565 YPDGLTTTLNLDDLDYLI 582 (808)
Q Consensus 565 ~~~G~~i~l~~~d~~~l~ 582 (808)
+|.+-.|++=++..+.
T Consensus 563 --pGss~f~lSleD~l~~ 578 (830)
T PRK12904 563 --PGSSRFYLSLEDDLMR 578 (830)
T ss_pred --CCceeEEEEcCcHHHH
Confidence 8999999875555444
No 107
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.66 E-value=4.3e-15 Score=171.88 Aligned_cols=97 Identities=28% Similarity=0.336 Sum_probs=79.4
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCC
Q 003593 483 HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562 (808)
Q Consensus 483 ~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G 562 (808)
.+.++|+||....|..+.-.||. |...||+||..++-|||.|++.|++.+-+- ..++-.|.|++|||||.|
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~--g~L~VlfaT~TLsLGiNMPCrTVvF~gDsL-------QL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQ--GHLQVLFATETLSLGINMPCRTVVFAGDSL-------QLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cccccccccchHHHHHHHHHhhc--CceEEEEEeeehhcccCCCceeEEEecccc-------ccCchhHHhhhccccccc
Confidence 57889999999999999999975 999999999999999999999999987422 568889999999999999
Q ss_pred CCCCceEEEEEecCCHHHHHHHhcCCch
Q 003593 563 SIYPDGLTTTLNLDDLDYLIECLKQPFE 590 (808)
Q Consensus 563 ~~~~~G~~i~l~~~d~~~l~~~l~~~~~ 590 (808)
-+ ..|.++.+--+ ...+.+++....+
T Consensus 1035 FD-~lGnV~FmgiP-~~kv~rLlts~L~ 1060 (1330)
T KOG0949|consen 1035 FD-TLGNVVFMGIP-RQKVQRLLTSLLP 1060 (1330)
T ss_pred cc-cccceEEEeCc-HHHHHHHHHHhhh
Confidence 74 47888877543 3445555544333
No 108
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.64 E-value=1.6e-15 Score=164.82 Aligned_cols=421 Identities=18% Similarity=0.138 Sum_probs=235.1
Q ss_pred CcccCCCCCcchhhccccccCCCCcccccccCccCCCCCCCCccccccccccc--cccccccCCCCCCchhhhhhhhhhh
Q 003593 98 GTATKPKVEDVEQESGVNFVQGGEEDKVEVLDDYFDGSVISDSTMVESVHKNS--NQSVRFLHLSTRDPVEVFGELRSTE 175 (808)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (808)
-|.+++||+.+++.+.+.++|-..+...-.+.|+..+.-+.++.......+.. ++.+...+....++...-.+.-.+.
T Consensus 160 cT~sYGKVKLVlK~nryFiEs~~~~Vlq~Ll~D~VI~~~r~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~a~~g~~~~~a 239 (776)
T KOG1123|consen 160 CTVSYGKVKLVLKHNRYFIESPHPDVLQMLLSDPVIQPCRIDSSEGEQGPSDGNENEKGFTKDKPATDPEAADGELLVSA 239 (776)
T ss_pred HhhccccEEEEEeccceeecCCCHHHHHHHhccccccceeecccccccccccccccCCCccCCCcCCCCCcCCcccccch
Confidence 46889999999999999998877777666666666654333333222221110 0000000001111100000000000
Q ss_pred -cccCCChhhHHHHHHHHHhhhhchhHHhHHHHhhcCCCCCCChhhhHHHHhhhcCChhHHHHHHHcCCCchhhhhhhhh
Q 003593 176 -KGAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKKCPDDVAQYLVWLGPSDDAVKFLFPI 254 (808)
Q Consensus 176 -~~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~i~~~~~p~~~~~f~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~ 254 (808)
-...+++.+-. .....|....+..+.....++.-...-...+.|++. ..++++...|... ..+.|+
T Consensus 240 ~i~~~~~~~e~~---~~~~~fei~~e~vE~vkkRCieidyPlLeEYDFRND---~~npdl~idLKPs-------t~iRpY 306 (776)
T KOG1123|consen 240 DIGDKIEEKEEE---DAEHRFEIKQESVETVKKRCIEIDYPLLEEYDFRND---NVNPDLDIDLKPS-------TQIRPY 306 (776)
T ss_pred hhhhhhcccccc---cceeeeeecHHHHHHHHHhhhccCchhhhhhccccC---CCCCCCCcCcCcc-------cccCch
Confidence 00011111100 001114444444445555555433333444566665 6666655444321 233344
Q ss_pred hHhhhcccCchHHHHHHHHHHHCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHHHHHHHHh-cCcEEEEcccHHHHHH
Q 003593 255 FVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAME 333 (808)
Q Consensus 255 f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~L~~L~~-~~~~lvl~Ptr~La~Q 333 (808)
.+......|.+ -..|.-|++.|.|+|||++-+.+... .+++||++..-.-+.|
T Consensus 307 QEksL~KMFGN--------------------------gRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQ 360 (776)
T KOG1123|consen 307 QEKSLSKMFGN--------------------------GRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQ 360 (776)
T ss_pred HHHHHHHHhCC--------------------------CcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHH
Confidence 44222222222 23467889999999999995444433 5689999999999999
Q ss_pred HHHHHHHcc----cccccccccccccc-ccCCeEEEeeecccCCCc----------------eeEEEEccchhhhcccch
Q 003593 334 VFDKVNALG----VYCSLLTGQEKKLV-PFSNHIACTVEMVSTDEM----------------YDVAVIDEIQMMSDACRG 392 (808)
Q Consensus 334 i~~~l~~~g----~~~~l~~g~~~~~~-~~~~~i~~t~e~l~~~~l----------------v~~vVIDEAh~i~d~~~g 392 (808)
+...+..+. ..++..|.+..... .....++.|..|+..... +.++++||+|.+...
T Consensus 361 WkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~--- 437 (776)
T KOG1123|consen 361 WKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK--- 437 (776)
T ss_pred HHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH---
Confidence 999888762 23455666555432 334566777777654322 899999999999854
Q ss_pred hHHHHHH--------hhcccccee----------cc----CCchHHHHHHHHhhhcCCCcEEEEeeecchh---------
Q 003593 393 YAWTRAL--------LGLMADEIH----------LC----GDPSVLDVVRKICSETGDELHEQHYERFKPL--------- 441 (808)
Q Consensus 393 ~~~~~~l--------~~l~~~~i~----------l~----~s~~~~~~i~~l~~~~~~~~~~~~~~r~~~~--------- 441 (808)
-|++.+ +||.++.++ |. -.+.|.++.+. +.---++-.+-..|.
T Consensus 438 -MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~k-----GhIA~VqCaEVWCpMt~eFy~eYL 511 (776)
T KOG1123|consen 438 -MFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKK-----GHIAKVQCAEVWCPMTPEFYREYL 511 (776)
T ss_pred -HHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhC-----CceeEEeeeeeecCCCHHHHHHHH
Confidence 455555 455554321 11 23445554331 110011111111110
Q ss_pred ----------hhh---HHHHHHHHh--hcCCCCEEEEechhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 003593 442 ----------VVE---AKTLLGDLR--NVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ 506 (808)
Q Consensus 442 ----------~~~---~~~ll~~l~--~~~~g~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~ 506 (808)
.+. +-..++.|. +...|+.||+|+- .+..+..+-.+. |. -.+||..++.+|.++++.|..
T Consensus 512 ~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsD-nvfALk~YAikl-~K--pfIYG~Tsq~ERm~ILqnFq~- 586 (776)
T KOG1123|consen 512 RENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSD-NVFALKEYAIKL-GK--PFIYGPTSQNERMKILQNFQT- 586 (776)
T ss_pred hhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEec-cHHHHHHHHHHc-CC--ceEECCCchhHHHHHHHhccc-
Confidence 000 002233331 2347889999983 344455544432 32 368999999999999999984
Q ss_pred CCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCc---eEEEEEecCCHH
Q 003593 507 DNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPD---GLTTTLNLDDLD 579 (808)
Q Consensus 507 ~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~---G~~i~l~~~d~~ 579 (808)
+..++-|+-+-+....||+| ..++|+.... -.|--+=-||.||.-|+.+.... ..-|.|++.|..
T Consensus 587 n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH--------~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 587 NPKVNTIFLSKVGDTSIDLPEANVLIQISSH--------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred CCccceEEEeeccCccccCCcccEEEEEccc--------ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 78899999999999999999 9999988752 34667778999998887653223 345555666543
No 109
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.62 E-value=2.8e-15 Score=153.25 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=112.3
Q ss_pred HHHHHHHHCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHHHHHHHH----h-----cCcEEEEcccHHHHHHHHHH
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFM----E-----AKKGIYCSPLRLLAMEVFDK 337 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~-----~~~~lvl~Ptr~La~Qi~~~ 337 (808)
.+++.+...|+..|+++| .+..+++|+++++++|||+|||++++.+++ . ++++||++|+++|+.|+.+.
T Consensus 9 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~ 88 (203)
T cd00268 9 ELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEV 88 (203)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHH
Confidence 345677789999998874 777788999999999999999999655543 2 34789999999999999999
Q ss_pred HHHcc----ccccccccccccc-----c-ccCCeEEEeeecc----cCC----CceeEEEEccchhhhcccchhHHHHHH
Q 003593 338 VNALG----VYCSLLTGQEKKL-----V-PFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTRAL 399 (808)
Q Consensus 338 l~~~g----~~~~l~~g~~~~~-----~-~~~~~i~~t~e~l----~~~----~lv~~vVIDEAh~i~d~~~g~~~~~~l 399 (808)
+..++ +.+..++|..... . .....+++|++.+ ... ..++++|+||||++.+.+++.....++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~ 168 (203)
T cd00268 89 ARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREIL 168 (203)
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHH
Confidence 98873 3444444433211 1 1345677886533 111 128999999999999888888888888
Q ss_pred hhccccceeccCCchHHHHHHHHhh
Q 003593 400 LGLMADEIHLCGDPSVLDVVRKICS 424 (808)
Q Consensus 400 ~~l~~~~i~l~~s~~~~~~i~~l~~ 424 (808)
..+....+.+..+++..+.+..++.
T Consensus 169 ~~l~~~~~~~~~SAT~~~~~~~~~~ 193 (203)
T cd00268 169 KLLPKDRQTLLFSATMPKEVRDLAR 193 (203)
T ss_pred HhCCcccEEEEEeccCCHHHHHHHH
Confidence 8777766666666665555544443
No 110
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.61 E-value=4.3e-14 Score=172.56 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=86.8
Q ss_pred CCCEEEEech-h-HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC-CCeeEEEECCCCccccccC-ccEEEE
Q 003593 457 SGDCVVAFSR-R-EIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD-NEFDVLVASDAVGMGLNLN-IRRVVF 532 (808)
Q Consensus 457 ~g~~II~fsr-k-~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~-g~~~ILVATda~~~GIDip-V~~VI~ 532 (808)
.|..||+||. . ....+...|. ..|+.++.+||+++.++|..+++.|++++ +...+|++|.++|.|||+. +++||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~-~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLM-YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 4556777764 3 3444444454 45999999999999999999999997522 3456799999999999996 999999
Q ss_pred eCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 533 ~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
||+ |-++....|++||+-|.|.. ..=.+|.|++.+
T Consensus 565 yD~---------dWNP~~d~QAidRaHRIGQk-k~V~VyRLIt~g 599 (1033)
T PLN03142 565 YDS---------DWNPQVDLQAQDRAHRIGQK-KEVQVFRFCTEY 599 (1033)
T ss_pred eCC---------CCChHHHHHHHHHhhhcCCC-ceEEEEEEEeCC
Confidence 999 88999999999999999983 234566666543
No 111
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=1e-13 Score=164.45 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=80.2
Q ss_pred HCCCCCC---cc--hhhhHHHhCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHcc----
Q 003593 276 SADLTKP---HT--WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALG---- 342 (808)
Q Consensus 276 ~~g~~~p---t~--~~~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g---- 342 (808)
.+||..| +| ++.++.++.++++++.|+||+|||++++.+++ .+..++||+||++||.|+++.+..++
T Consensus 84 ~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 84 VSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred cccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 6799988 55 47888889999999999999999999665554 34468899999999999999998764
Q ss_pred cccccccccccc-cc---ccCCeEEEeeecc-----cCC-----------CceeEEEEccchhhh
Q 003593 343 VYCSLLTGQEKK-LV---PFSNHIACTVEMV-----STD-----------EMYDVAVIDEIQMMS 387 (808)
Q Consensus 343 ~~~~l~~g~~~~-~~---~~~~~i~~t~e~l-----~~~-----------~lv~~vVIDEAh~i~ 387 (808)
+.++++.|.... .. -...++++|+.-+ ... +.+.++||||||.|+
T Consensus 164 LsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 444444433221 11 1245667776322 222 115799999999984
No 112
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=2.7e-15 Score=129.41 Aligned_cols=73 Identities=33% Similarity=0.569 Sum_probs=69.8
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCc
Q 003593 479 HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGR 557 (808)
Q Consensus 479 ~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GR 557 (808)
..++.+..+||++++.+|..+++.|+. +...|||||+++++|||+| +++||++++ |.+...|.|++||
T Consensus 5 ~~~~~~~~i~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gid~~~~~~vi~~~~---------~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 5 KKGIKVAIIHGDMSQKERQEILKKFNS--GEIRVLIATDILGEGIDLPDASHVIFYDP---------PWSPEEYIQRIGR 73 (78)
T ss_dssp HTTSSEEEESTTSHHHHHHHHHHHHHT--TSSSEEEESCGGTTSSTSTTESEEEESSS---------ESSHHHHHHHHTT
T ss_pred HCCCcEEEEECCCCHHHHHHHHHHhhc--cCceEEEeecccccccccccccccccccc---------CCCHHHHHHHhhc
Confidence 459999999999999999999999975 8889999999999999998 999999999 8999999999999
Q ss_pred cCCCC
Q 003593 558 AGRRG 562 (808)
Q Consensus 558 AGR~G 562 (808)
+||.|
T Consensus 74 ~~R~g 78 (78)
T PF00271_consen 74 AGRIG 78 (78)
T ss_dssp SSTTT
T ss_pred CCCCC
Confidence 99987
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=6e-14 Score=166.23 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=87.2
Q ss_pred CCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCcc-----
Q 003593 456 RSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIR----- 528 (808)
Q Consensus 456 ~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~----- 528 (808)
..|..|++|| ...++.++..|.+ .|+++.++||.+++.+|..+.+.|+. |. |+||||++|||+||-..
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~-~gi~~~vLnak~~~~Ea~ii~~Ag~~--G~--VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVK-EKIPHEVLNAKFHEREAEIVAQAGRT--GA--VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHH-CCCCeEeccCcccHHHHHHHHhCCCC--Cc--EEEecCCcCCCcceecCCchHH
Confidence 4555555554 4667777777766 49999999999999999999999954 76 99999999999999543
Q ss_pred ---------------------------------EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 529 ---------------------------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 529 ---------------------------------~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
+||-... +.|.--=-|-.|||||-|. +|.+-.|++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTer---------heSrRID~QLrGRaGRQGD---PGss~f~lS 589 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTER---------HESRRIDNQLRGRAGRQGD---AGSSRFYLS 589 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEeccc---------CchHHHHhhhhcccccCCC---CCceeEEEE
Confidence 5565554 7777777899999999998 899999987
Q ss_pred CCHHHHH
Q 003593 576 DDLDYLI 582 (808)
Q Consensus 576 ~d~~~l~ 582 (808)
=++..++
T Consensus 590 lED~L~r 596 (908)
T PRK13107 590 MEDSLMR 596 (908)
T ss_pred eCcHHHH
Confidence 5544443
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.56 E-value=3.2e-14 Score=168.58 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=105.6
Q ss_pred HHHHHHHhhc-CCCC-EEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccc
Q 003593 446 KTLLGDLRNV-RSGD-CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (808)
Q Consensus 446 ~~ll~~l~~~-~~g~-~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~G 522 (808)
..++..+... ..+. ++||+ +++.+..++..|.+. |+.+..+||++++.+|..+++.|+. |++.|||||+++++|
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-GIKVRYLHSEIDTLERVEIIRDLRL--GEFDVLVGINLLREG 505 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-ccceeeeeCCCCHHHHHHHHHHHhc--CCceEEEEcChhcCC
Confidence 3555555432 3344 45555 568899999999875 9999999999999999999999965 999999999999999
Q ss_pred cccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHhcC
Q 003593 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLKQ 587 (808)
Q Consensus 523 IDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l~~ 587 (808)
+|+| +++||++|..+| | .|.+..+|+||+|||||.. .|.|++|.+.....+.+.+.+
T Consensus 506 fDiP~v~lVvi~Dadif-G---~p~~~~~~iqriGRagR~~----~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 506 LDLPEVSLVAILDADKE-G---FLRSERSLIQTIGRAARNV----NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred eeeCCCcEEEEeCcccc-c---CCCCHHHHHHHhcCCCCCC----CCEEEEEEcCCCHHHHHHHHH
Confidence 9998 999999984332 1 2889999999999999984 599999998766666665543
No 115
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.54 E-value=2.9e-13 Score=158.71 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=159.2
Q ss_pred HCCCCCCcchh--hhHHHhCCCeEEEEecCCCcHHHH-HHHHHH---hcCcEEEEcccHHHHHHHHHHHHHcccccc---
Q 003593 276 SADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN-ALQRFM---EAKKGIYCSPLRLLAMEVFDKVNALGVYCS--- 346 (808)
Q Consensus 276 ~~g~~~pt~~~--~i~~~l~grdvlv~apTGSGKTl~-~L~~L~---~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~--- 346 (808)
..|| +|..+| ..-+++.|+..-++||||.|||+- .+.++. .+++++||.||..|+.|+++++.+++...+
T Consensus 78 ~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~ 156 (1187)
T COG1110 78 ATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLD 156 (1187)
T ss_pred hhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcc
Confidence 3455 777665 456789999999999999999988 344443 356899999999999999999999864433
Q ss_pred --c-ccccccccc----------ccCCeEEEeeecccCC------CceeEEEEccchhhhcccchhHHHHHHhhccccc-
Q 003593 347 --L-LTGQEKKLV----------PFSNHIACTVEMVSTD------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE- 406 (808)
Q Consensus 347 --l-~~g~~~~~~----------~~~~~i~~t~e~l~~~------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~- 406 (808)
+ +++...... ..-.++++|..++... ..++++++|.+|.++-.+..-+-.-.++|++...
T Consensus 157 ~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i 236 (1187)
T COG1110 157 VLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVI 236 (1187)
T ss_pred eeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHH
Confidence 1 233211110 1234455665444321 2289999999999876443222222223332211
Q ss_pred -----------------------------------------eeccCCch------HHHHHHHHhhhcC------CCcEEE
Q 003593 407 -----------------------------------------IHLCGDPS------VLDVVRKICSETG------DELHEQ 433 (808)
Q Consensus 407 -----------------------------------------i~l~~s~~------~~~~i~~l~~~~~------~~~~~~ 433 (808)
+.+..+++ ...+.+.++.-.. ...++.
T Consensus 237 ~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD 316 (1187)
T COG1110 237 ESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVD 316 (1187)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheee
Confidence 11111111 1222222222110 011222
Q ss_pred EeeecchhhhhHHHHHHHHhhcCCCCEEEEec---hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCe
Q 003593 434 HYERFKPLVVEAKTLLGDLRNVRSGDCVVAFS---RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF 510 (808)
Q Consensus 434 ~~~r~~~~~~~~~~ll~~l~~~~~g~~II~fs---rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~ 510 (808)
.|... ....++++.+.....|..|++-. +..+++++..|+.. |+++..+|++- .+.++.|.. |++
T Consensus 317 ~y~~~----~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~-Gi~a~~~~a~~-----~~~le~F~~--Gei 384 (1187)
T COG1110 317 IYVES----ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSH-GINAELIHAEK-----EEALEDFEE--GEV 384 (1187)
T ss_pred eeccC----ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhc-CceEEEeeccc-----hhhhhhhcc--Cce
Confidence 22111 12245667777777775555555 57889999999885 99999999942 568999965 999
Q ss_pred eEEEEC----CCCccccccC--ccEEEEeCCccC
Q 003593 511 DVLVAS----DAVGMGLNLN--IRRVVFYSLSKY 538 (808)
Q Consensus 511 ~ILVAT----da~~~GIDip--V~~VI~~~~~K~ 538 (808)
+|||.+ .++-||||+| |+++|+++.|||
T Consensus 385 dvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 385 DVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred eEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 999986 6899999999 999999999964
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.2e-12 Score=144.64 Aligned_cols=129 Identities=19% Similarity=0.244 Sum_probs=103.8
Q ss_pred HHHHHHHhh-cCCCCEEEE--echhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccc
Q 003593 446 KTLLGDLRN-VRSGDCVVA--FSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMG 522 (808)
Q Consensus 446 ~~ll~~l~~-~~~g~~II~--fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~G 522 (808)
..|+..+.. ...+..+++ .|++.++++..+|... |+++.++|++...-+|..+++..+. |.++|||.-+.+-.|
T Consensus 433 dDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~-gikv~YlHSdidTlER~eIirdLR~--G~~DvLVGINLLREG 509 (663)
T COG0556 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL-GIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREG 509 (663)
T ss_pred HHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc-CceEEeeeccchHHHHHHHHHHHhc--CCccEEEeehhhhcc
Confidence 455555533 333444333 3789999999999875 9999999999999999999999986 999999999999999
Q ss_pred cccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHh
Q 003593 523 LNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (808)
Q Consensus 523 IDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l 585 (808)
||+| |.+|...|.-| .|. ..|-.+.+|-+|||+|.-. |.++++...-...+.+.+
T Consensus 510 LDiPEVsLVAIlDADK-eGF---LRse~SLIQtIGRAARN~~----GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 510 LDLPEVSLVAILDADK-EGF---LRSERSLIQTIGRAARNVN----GKVILYADKITDSMQKAI 565 (663)
T ss_pred CCCcceeEEEEeecCc-ccc---ccccchHHHHHHHHhhccC----CeEEEEchhhhHHHHHHH
Confidence 9999 99999988744 111 6788999999999999886 999998765444454544
No 117
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.50 E-value=2.1e-13 Score=128.44 Aligned_cols=112 Identities=29% Similarity=0.424 Sum_probs=95.3
Q ss_pred HHHHHHhhcC--CCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRNVR--SGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~~~--~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.+...+.+.. .+.++||+ +...++.++..|.+ .+..+..+||++++.+|..+++.|++ +...||++|.++++|+
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~~~~G~ 92 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-PGIKVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVIARGI 92 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcChhhcCc
Confidence 4444554433 55666776 45778888888876 48899999999999999999999965 8899999999999999
Q ss_pred ccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEE
Q 003593 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573 (808)
Q Consensus 524 Dip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l 573 (808)
|+| +++||++++ |.+...+.|++||+||.|. .|.|+.+
T Consensus 93 d~~~~~~vi~~~~---------~~~~~~~~Q~~GR~~R~~~---~~~~~~~ 131 (131)
T cd00079 93 DLPNVSVVINYDL---------PWSPSSYLQRIGRAGRAGQ---KGTAILL 131 (131)
T ss_pred ChhhCCEEEEeCC---------CCCHHHheecccccccCCC---CceEEeC
Confidence 998 999999999 8899999999999999998 7888754
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.49 E-value=6.2e-13 Score=158.61 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=102.5
Q ss_pred HHHHHHhhc-CCCC-EEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRNV-RSGD-CVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~~-~~g~-~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+... ..+. ++||+ +++.+..++..|... |+++..+||++++.+|..+++.|+. |.+.|||||+++++|+
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-gi~~~~~h~~~~~~~R~~~l~~f~~--g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-GIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGL 510 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-ceeEEEEECCCCHHHHHHHHHHHHc--CCceEEEEeCHHhCCc
Confidence 455555332 2344 45555 568899999999875 9999999999999999999999965 9999999999999999
Q ss_pred ccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHHh
Q 003593 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (808)
Q Consensus 524 Dip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~l 585 (808)
|+| +++||+++...|. .|.+..+|+||+|||||. . .|.|++|++.....+.+.+
T Consensus 511 dlp~v~lVii~d~eifG----~~~~~~~yiqr~GR~gR~-~---~G~~i~~~~~~~~~~~~~~ 565 (652)
T PRK05298 511 DIPEVSLVAILDADKEG----FLRSERSLIQTIGRAARN-V---NGKVILYADKITDSMQKAI 565 (652)
T ss_pred cccCCcEEEEeCCcccc----cCCCHHHHHHHhccccCC-C---CCEEEEEecCCCHHHHHHH
Confidence 998 9999999974431 167999999999999996 4 6999999986544444443
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.46 E-value=2.4e-12 Score=154.15 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=153.9
Q ss_pred CCeEEEEecCCCcHHHHHH---HHHH---hcCcEEEEcccHHHHHHHHHHHHHcccccccccccc---cc--ccccCCeE
Q 003593 294 RKIIYHCGPTNSGKTYNAL---QRFM---EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQE---KK--LVPFSNHI 362 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L---~~L~---~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~---~~--~~~~~~~i 362 (808)
++..++.+|||||||+.++ ..+. ..+++|||+|+++|..|+.+.+..++..+....+.. .. ......++
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCAERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCCcccCCHHHHHHHHhCCCCCEE
Confidence 4679999999999998832 2222 345789999999999999999999875432111110 01 01124577
Q ss_pred EEeeecccCC------C-----ceeEEEEccchhhhcccchhHHHHHHhhcc-ccceeccCCchHHHHHH---HHh----
Q 003593 363 ACTVEMVSTD------E-----MYDVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIHLCGDPSVLDVVR---KIC---- 423 (808)
Q Consensus 363 ~~t~e~l~~~------~-----lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~-~~~i~l~~s~~~~~~i~---~l~---- 423 (808)
++|+..+... . .-.+||+||||+.....|...++. .++ +..+-++++|....... .+.
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~---~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg 419 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKK---ALKNASFFGFTGTPIFKKDRDTSLTFAYVFG 419 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHh---hCCCCcEEEEeCCCcccccccccccccCCCC
Confidence 7887655420 0 012899999999864333333332 222 23344455553211000 000
Q ss_pred ---------hhcCCCcEEE--Eeeecchhhh----------------------------h---------------H----
Q 003593 424 ---------SETGDELHEQ--HYERFKPLVV----------------------------E---------------A---- 445 (808)
Q Consensus 424 ---------~~~~~~~~~~--~~~r~~~~~~----------------------------~---------------~---- 445 (808)
....+..... ++.+...... + .
T Consensus 420 ~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia 499 (667)
T TIGR00348 420 RYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIA 499 (667)
T ss_pred CeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHH
Confidence 0000111110 1111000000 0 0
Q ss_pred HHHHHHHhh---cCCCCEEEEe-chhHHHHHHHHHHHhc----CCeEEEEcCCCCHH---------------------HH
Q 003593 446 KTLLGDLRN---VRSGDCVVAF-SRREIFEVKMAIEKHT----NHHCCVIYGALPPE---------------------TR 496 (808)
Q Consensus 446 ~~ll~~l~~---~~~g~~II~f-srk~~~~l~~~L~~~~----g~~v~~lhg~l~~~---------------------~R 496 (808)
+.+++.+.. ...++.+||+ ++..|..++..|.+.. +..++++++..+.+ ..
T Consensus 500 ~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (667)
T TIGR00348 500 KDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIY 579 (667)
T ss_pred HHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHH
Confidence 011222211 1235666665 6788888887776532 24566666654332 22
Q ss_pred HHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCC-CCCCCCceEEEEEe
Q 003593 497 RQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGR-RGSIYPDGLTTTLN 574 (808)
Q Consensus 497 ~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR-~G~~~~~G~~i~l~ 574 (808)
..++++|++ .+.++|||.+|.+..|+|.| +..++..- |..-..++|.+||+-| .+...+.|.++-|+
T Consensus 580 ~~~~~~Fk~-~~~~~ilIVvdmllTGFDaP~l~tLyldK----------plk~h~LlQai~R~nR~~~~~K~~g~IvDy~ 648 (667)
T TIGR00348 580 YKDLERFKK-EENPKLLIVVDMLLTGFDAPILNTLYLDK----------PLKYHGLLQAIARTNRIDGKDKTFGLIVDYR 648 (667)
T ss_pred HHHHHHhcC-CCCceEEEEEcccccccCCCccceEEEec----------cccccHHHHHHHHhccccCCCCCCEEEEECc
Confidence 468889974 47899999999999999999 77666655 5455568999999999 44434568888887
Q ss_pred c
Q 003593 575 L 575 (808)
Q Consensus 575 ~ 575 (808)
.
T Consensus 649 g 649 (667)
T TIGR00348 649 G 649 (667)
T ss_pred C
Confidence 5
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.43 E-value=2.8e-12 Score=148.74 Aligned_cols=256 Identities=16% Similarity=0.217 Sum_probs=150.1
Q ss_pred CCeEEEEecCCCcHHHHHH---HHHHhc---CcEEEEcccHHHHHHHHHHHHHc---cccccccccccccccccCCeEEE
Q 003593 294 RKIIYHCGPTNSGKTYNAL---QRFMEA---KKGIYCSPLRLLAMEVFDKVNAL---GVYCSLLTGQEKKLVPFSNHIAC 364 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L---~~L~~~---~~~lvl~Ptr~La~Qi~~~l~~~---g~~~~l~~g~~~~~~~~~~~i~~ 364 (808)
.+-++++|.||+|||..++ -.|++. +++|+|+-+++|..|-+..+..+ +-.+..+.+..... ...+.++
T Consensus 185 ~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~~~--s~~i~ls 262 (875)
T COG4096 185 QNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKGDT--SSEIYLS 262 (875)
T ss_pred CceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecccCCc--ceeEEEe
Confidence 3459999999999998843 344443 58999999999999999988876 44444444433222 1223334
Q ss_pred eeec--------------ccCCCceeEEEEccchhhhcccchhHHH---HHHhhccccc--------eecc-CCchHH-H
Q 003593 365 TVEM--------------VSTDEMYDVAVIDEIQMMSDACRGYAWT---RALLGLMADE--------IHLC-GDPSVL-D 417 (808)
Q Consensus 365 t~e~--------------l~~~~lv~~vVIDEAh~i~d~~~g~~~~---~~l~~l~~~~--------i~l~-~s~~~~-~ 417 (808)
|+.. +.++. +++|||||||+-.-..|...+. .+..++.++. ..++ +.|+.. .
T Consensus 263 Tyqt~~~~~~~~~~~~~~f~~g~-FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~Ys 341 (875)
T COG4096 263 TYQTMTGRIEQKEDEYRRFGPGF-FDLIVIDEAHRGIYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFNGEPTYAYS 341 (875)
T ss_pred ehHHHHhhhhccccccccCCCCc-eeEEEechhhhhHHhhhHHHHHHHHHHHHhhccCcccccccccccccCCCcceeec
Confidence 4321 12222 8999999999977554543332 2223333321 1123 333211 0
Q ss_pred HHHHHhhhc--CCCcE------------------------------EEEe-----eecchhhhhH----HHHHHHHhh--
Q 003593 418 VVRKICSET--GDELH------------------------------EQHY-----ERFKPLVVEA----KTLLGDLRN-- 454 (808)
Q Consensus 418 ~i~~l~~~~--~~~~~------------------------------~~~~-----~r~~~~~~~~----~~ll~~l~~-- 454 (808)
+-+.+.... +...+ -+.| ++........ +.+.+.+..
T Consensus 342 leeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~ 421 (875)
T COG4096 342 LEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGA 421 (875)
T ss_pred HHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhcccc
Confidence 000010000 00000 0111 1111111111 123333333
Q ss_pred cC--CCCEEEEe-chhHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-
Q 003593 455 VR--SGDCVVAF-SRREIFEVKMAIEKH----TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN- 526 (808)
Q Consensus 455 ~~--~g~~II~f-srk~~~~l~~~L~~~----~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip- 526 (808)
.. .++.|||+ +...++.+...+.+. .|.-|..+.|+-.+..+ .+..|..+..-..|.|+.+.+..|||+|
T Consensus 422 ~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpe 499 (875)
T COG4096 422 TGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPE 499 (875)
T ss_pred CCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchh
Confidence 11 34567777 457788888887753 34567778777654433 5566654456788999999999999998
Q ss_pred ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCC
Q 003593 527 IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS 563 (808)
Q Consensus 527 V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~ 563 (808)
|..+|++.. -.|..-|.|++||+-|.-+
T Consensus 500 v~nlVF~r~---------VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 500 VVNLVFDRK---------VRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred eeeeeehhh---------hhhHHHHHHHhcCccccCc
Confidence 999999887 6699999999999999643
No 121
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.43 E-value=3e-13 Score=133.68 Aligned_cols=118 Identities=23% Similarity=0.255 Sum_probs=85.0
Q ss_pred hhhhHHHhCCCeEEEEecCCCcHHHHHHHHHH----hc--CcEEEEcccHHHHHHHHHHHHHcccc----cccccccccc
Q 003593 285 WFPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EA--KKGIYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEKK 354 (808)
Q Consensus 285 ~~~i~~~l~grdvlv~apTGSGKTl~~L~~L~----~~--~~~lvl~Ptr~La~Qi~~~l~~~g~~----~~l~~g~~~~ 354 (808)
...+..+++|+++++.||||+|||++++.+++ +. +.+||++|+++|+.|+++.+..++.. +..++|....
T Consensus 5 ~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T PF00270_consen 5 QEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSI 84 (169)
T ss_dssp HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCH
T ss_pred HHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccc
Confidence 34555567999999999999999999654443 33 38899999999999999999988554 3344443321
Q ss_pred c------c-ccCCeEEEeeecc----cCC----CceeEEEEccchhhhcccchhHHHHHHhhc
Q 003593 355 L------V-PFSNHIACTVEMV----STD----EMYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (808)
Q Consensus 355 ~------~-~~~~~i~~t~e~l----~~~----~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l 402 (808)
. . .....+++|++.+ ... ..+++|||||+|++.+..++..+..++..+
T Consensus 85 ~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~ 147 (169)
T PF00270_consen 85 SEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRL 147 (169)
T ss_dssp HHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHS
T ss_pred cccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHh
Confidence 1 1 1366778887543 211 128999999999999876777777776665
No 122
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.41 E-value=7.5e-13 Score=114.01 Aligned_cols=79 Identities=32% Similarity=0.501 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhH
Q 003593 472 VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQ 550 (808)
Q Consensus 472 l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~ 550 (808)
++..|.+. ++.+..+||++++++|..+++.|++ +...|||+|+++++|+|+| ++.||++++ |.+...
T Consensus 3 l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gi~~~~~~~vi~~~~---------~~~~~~ 70 (82)
T smart00490 3 LAELLKEL-GIKVARLHGGLSQEEREEILEKFNN--GKIKVLVATDVAERGLDLPGVDLVIIYDL---------PWSPAS 70 (82)
T ss_pred HHHHHHHC-CCeEEEEECCCCHHHHHHHHHHHHc--CCCeEEEECChhhCCcChhcCCEEEEeCC---------CCCHHH
Confidence 45556554 8999999999999999999999975 8889999999999999998 999999999 889999
Q ss_pred HHHHhCccCCCC
Q 003593 551 VKQIAGRAGRRG 562 (808)
Q Consensus 551 y~Qr~GRAGR~G 562 (808)
|.|++||+||.|
T Consensus 71 ~~Q~~gR~~R~g 82 (82)
T smart00490 71 YIQRIGRAGRAG 82 (82)
T ss_pred HHHhhcccccCC
Confidence 999999999986
No 123
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.38 E-value=1.6e-11 Score=145.81 Aligned_cols=348 Identities=17% Similarity=0.177 Sum_probs=211.6
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHh---cCcEEEEcccHHHHHHHHHHHHHc-----ccccccccccccccc---ccCC
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFME---AKKGIYCSPLRLLAMEVFDKVNAL-----GVYCSLLTGQEKKLV---PFSN 360 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~---~~~~lvl~Ptr~La~Qi~~~l~~~-----g~~~~l~~g~~~~~~---~~~~ 360 (808)
..+++|++.+|+|||||.|+-.+++. .++++|++|.-+.+..++..+.+. |..+..++|+..-+. ....
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~ 1236 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQ 1236 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcc
Confidence 45778999999999999997777765 357899999999999998877643 555566777765443 3567
Q ss_pred eEEEeeecccC---CCceeEEEEccchhhhcccchhHHH------HHHhhccccceeccCCchHHHHHHHHhhhc-----
Q 003593 361 HIACTVEMVST---DEMYDVAVIDEIQMMSDACRGYAWT------RALLGLMADEIHLCGDPSVLDVVRKICSET----- 426 (808)
Q Consensus 361 ~i~~t~e~l~~---~~lv~~vVIDEAh~i~d~~~g~~~~------~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~----- 426 (808)
.+++|++..+. ...+++.|.||.|++.+ ..|..+. .+-..+. ..+++.+-.+....++.++...
T Consensus 1237 vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~-k~ir~v~ls~~lana~d~ig~s~~~v~ 1314 (1674)
T KOG0951|consen 1237 VIISTPEQWDLLQSIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLE-KKIRVVALSSSLANARDLIGASSSGVF 1314 (1674)
T ss_pred eEEechhHHHHHhhhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHH-hheeEEEeehhhccchhhcccccccee
Confidence 78888865543 34499999999999984 2443322 1111111 1122211111111112221111
Q ss_pred ---------CCCcEEEEeeecchhh---hhHHHHHHHHhh--cCCCCEEEEe-chhHHHHHHHHHH--------------
Q 003593 427 ---------GDELHEQHYERFKPLV---VEAKTLLGDLRN--VRSGDCVVAF-SRREIFEVKMAIE-------------- 477 (808)
Q Consensus 427 ---------~~~~~~~~~~r~~~~~---~~~~~ll~~l~~--~~~g~~II~f-srk~~~~l~~~L~-------------- 477 (808)
+..+.++.+....... ...+..+..+.+ ..+...+||. +|+.|..++..+.
T Consensus 1315 Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~ 1394 (1674)
T KOG0951|consen 1315 NFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSE 1394 (1674)
T ss_pred ecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHH
Confidence 1112223322111000 000122222211 1233456665 5777665554332
Q ss_pred ---------HhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCC--ccccC
Q 003593 478 ---------KHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGD--KIIPV 546 (808)
Q Consensus 478 ---------~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~--~~~P~ 546 (808)
+.....+. |-+|+..+..-+...|.. |.++|+|...- .+|+-.-...||-.|..-|||. .+.+.
T Consensus 1395 ~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~--g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y 1469 (1674)
T KOG0951|consen 1395 LEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEA--GAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDY 1469 (1674)
T ss_pred HhcchHhhhhccccccc--ccccCcchHHHHHHHHhc--CcEEEEEEEcc-cccccccceEEEEecceeecccccccccC
Confidence 11223333 999999999999999965 99999999877 9999988999999999999998 58899
Q ss_pred CHhHHHHHhCccCCCCCCCCceEEEEEe-cCCHHHHHHHhcCCchhhHHhCCC----CcHHHHHHHHhhcccccHHHHHH
Q 003593 547 PGSQVKQIAGRAGRRGSIYPDGLTTTLN-LDDLDYLIECLKQPFEVVKKVGLF----PFFEQVELFAGQLSNYTFCQLLE 621 (808)
Q Consensus 547 s~~~y~Qr~GRAGR~G~~~~~G~~i~l~-~~d~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~ 621 (808)
+++...|+.|+|.|+ |.|+.+. .++..++++++.++.+-....... -+.+.......+-.+|---....
T Consensus 1470 ~i~~ll~m~G~a~~~------~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s 1543 (1674)
T KOG0951|consen 1470 PIAELLQMVGLASGA------GKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWS 1543 (1674)
T ss_pred chhHHHHHhhhhcCC------ccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999984 4567776 577888999999987765443321 01111111111111121112244
Q ss_pred HHHhhcccCCCcccCCcchHHHHHHHHHHhc
Q 003593 622 KFGENCRLDGSYFLCRHDHIKKVANMLEKVQ 652 (808)
Q Consensus 622 ~f~e~~~~~~~~~~c~~~~~~~~a~~l~~~~ 652 (808)
|+.......++|++-+...+..+...|..+.
T Consensus 1544 ~~yrr~~~np~yy~l~~v~~~~~S~~lS~lv 1574 (1674)
T KOG0951|consen 1544 FMYRRLPQNPNYYNLQGVSHRHLSDFLSELV 1574 (1674)
T ss_pred HhhhccccCcceecccccchhhhhhHHHHHH
Confidence 5555666666776666566666666666553
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.37 E-value=1.3e-11 Score=145.67 Aligned_cols=289 Identities=16% Similarity=0.140 Sum_probs=164.9
Q ss_pred CeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHH-ccccccccccccccccc----------cC
Q 003593 295 KIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVP----------FS 359 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~~----------~~ 359 (808)
+..++-|.||||||.+|++.+. .++.+|+++|-++|..|+.++++. +|.++.++++.-..... ..
T Consensus 218 ~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~ 297 (730)
T COG1198 218 APFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA 297 (730)
T ss_pred cceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc
Confidence 6789999999999999776653 466899999999999999999985 58888887776544322 22
Q ss_pred CeEEEee-ecccCCCceeEEEEccchhhhcc---cchhHHHHH--HhhccccceeccCCc--hHHHHHHHHhhhcCCCcE
Q 003593 360 NHIACTV-EMVSTDEMYDVAVIDEIQMMSDA---CRGYAWTRA--LLGLMADEIHLCGDP--SVLDVVRKICSETGDELH 431 (808)
Q Consensus 360 ~~i~~t~-e~l~~~~lv~~vVIDEAh~i~d~---~~g~~~~~~--l~~l~~~~i~l~~s~--~~~~~i~~l~~~~~~~~~ 431 (808)
.+++.|- -++.|-..+.+|||||-|.-+-. ++...-+.+ +.+-......+++++ +..............-..
T Consensus 298 ~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L 377 (730)
T COG1198 298 RVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRL 377 (730)
T ss_pred eEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEc
Confidence 3344443 45666666999999999987532 222222221 111111122233332 222222110000000000
Q ss_pred EEEee------------ecchhhh---hHHHHHHHHhh-cCCCC-EEEEech----------------------------
Q 003593 432 EQHYE------------RFKPLVV---EAKTLLGDLRN-VRSGD-CVVAFSR---------------------------- 466 (808)
Q Consensus 432 ~~~~~------------r~~~~~~---~~~~ll~~l~~-~~~g~-~II~fsr---------------------------- 466 (808)
.+.+. +..+... -...+++.+.+ ...|. .++|++|
T Consensus 378 ~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H 457 (730)
T COG1198 378 TNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLH 457 (730)
T ss_pred cccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEe
Confidence 00000 0000000 01223333311 11111 1222122
Q ss_pred ---------------------------------hHHHHHHHHHHHhc-CCeEEEEcCCCCHHH--HHHHHHHHhcCCCCe
Q 003593 467 ---------------------------------REIFEVKMAIEKHT-NHHCCVIYGALPPET--RRQQANLFNDQDNEF 510 (808)
Q Consensus 467 ---------------------------------k~~~~l~~~L~~~~-g~~v~~lhg~l~~~~--R~~~~~~F~~~~g~~ 510 (808)
..++++.+.|.+.. +.++..+-++..... -+..+..|.+ |+.
T Consensus 458 ~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~--ge~ 535 (730)
T COG1198 458 KATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN--GEA 535 (730)
T ss_pred cCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC--CCC
Confidence 12444555555432 667888877765433 4567889965 999
Q ss_pred eEEEECCCCccccccC-ccEEEEeCC--ccCCCC-ccccCCHhHHHHHhCccCCCCCCCCceEEEEE-ecCCHHHHHHHh
Q 003593 511 DVLVASDAVGMGLNLN-IRRVVFYSL--SKYNGD-KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL-NLDDLDYLIECL 585 (808)
Q Consensus 511 ~ILVATda~~~GIDip-V~~VI~~~~--~K~dg~-~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l-~~~d~~~l~~~l 585 (808)
+|||.|..++.|.|+| |..|...|. .-+.+. +..-.....+.|-+|||||.+. .|.++.= +.++...+...+
T Consensus 536 dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~---~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 536 DILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK---PGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred CeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC---CCeEEEEeCCCCcHHHHHHH
Confidence 9999999999999998 887755443 222211 2223467788999999999987 6766654 456666666655
Q ss_pred cCC
Q 003593 586 KQP 588 (808)
Q Consensus 586 ~~~ 588 (808)
...
T Consensus 613 ~~d 615 (730)
T COG1198 613 RGD 615 (730)
T ss_pred hcC
Confidence 443
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=1.9e-10 Score=133.92 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=86.0
Q ss_pred HHHHHHh-hcCCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLR-NVRSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~-~~~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.+++.+. .+..|..|++.| -...+.+...|.+. |++..++++.-...+ ..++..- ...-.|.|||+.+|||-
T Consensus 415 Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~-gI~h~vLNAk~~~~E-A~IIa~A---G~~gaVTIATNMAGRGT 489 (764)
T PRK12326 415 AIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA-GVPAVVLNAKNDAEE-ARIIAEA---GKYGAVTVSTQMAGRGT 489 (764)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC-CCcceeeccCchHhH-HHHHHhc---CCCCcEEEEecCCCCcc
Confidence 3444442 234566555553 46777888888765 999999998754333 3333332 13457999999999999
Q ss_pred ccCcc----------------EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHH
Q 003593 524 NLNIR----------------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (808)
Q Consensus 524 DipV~----------------~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~ 584 (808)
||... +||-... +.|.--=.|-.|||||-|. +|.+-.|++=++..+..+
T Consensus 490 DIkLg~~~~~~~~~V~~~GGLhVIgTer---------heSrRID~QLrGRaGRQGD---pGss~f~lSleDdl~~~f 554 (764)
T PRK12326 490 DIRLGGSDEADRDRVAELGGLHVIGTGR---------HRSERLDNQLRGRAGRQGD---PGSSVFFVSLEDDVVAAN 554 (764)
T ss_pred CeecCCCcccchHHHHHcCCcEEEeccC---------CchHHHHHHHhcccccCCC---CCceeEEEEcchhHHHhc
Confidence 99643 6777666 7888888999999999999 899999987665555444
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=7.5e-11 Score=140.80 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=95.8
Q ss_pred HHHHHHhhc--CCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRNV--RSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~~--~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+... ....++|++ |...++.+...|.+. |+.+.++|+ .+.+|+..+..|.. +...|+||||++|||+
T Consensus 586 Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~-gI~h~vLna--kq~~REa~Iia~AG--~~g~VtIATNMAGRGt 660 (1025)
T PRK12900 586 AIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK-RIAHNVLNA--KQHDREAEIVAEAG--QKGAVTIATNMAGRGT 660 (1025)
T ss_pred HHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc-CCCceeecC--CHHHhHHHHHHhcC--CCCeEEEeccCcCCCC
Confidence 566656332 333455555 456777788878765 999999997 68899999999954 8999999999999999
Q ss_pred ccC----cc-----EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHHH
Q 003593 524 NLN----IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIEC 584 (808)
Q Consensus 524 Dip----V~-----~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~~ 584 (808)
||+ |. +||++.. |.|...|.|++|||||.|. +|.+.+|++.++..++.+
T Consensus 661 DIkl~~~V~~vGGL~VIgter---------hes~Rid~Ql~GRtGRqGd---pGsS~ffvSleD~Lmr~f 718 (1025)
T PRK12900 661 DIKLGEGVRELGGLFILGSER---------HESRRIDRQLRGRAGRQGD---PGESVFYVSLEDELMRLF 718 (1025)
T ss_pred CcCCccchhhhCCceeeCCCC---------CchHHHHHHHhhhhhcCCC---CcceEEEechhHHHHHhh
Confidence 996 33 3377776 8899999999999999999 999999998776665443
No 127
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.22 E-value=9.7e-10 Score=125.92 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=85.2
Q ss_pred CCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCC-CCeeEEEECCCCccccccC-ccEEEE
Q 003593 456 RSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQD-NEFDVLVASDAVGMGLNLN-IRRVVF 532 (808)
Q Consensus 456 ~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~-g~~~ILVATda~~~GIDip-V~~VI~ 532 (808)
..|..|++||+ ....++........++..+-+-|.++.++|..+++.|+.+. ...-.|++|-|.|-|||+- .+.||.
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl 564 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL 564 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE
Confidence 35678888885 44555555555556999999999999999999999998633 3567799999999999995 999999
Q ss_pred eCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 533 ~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
||- --++..=.|-.-||-|-|. ...-.+|.|++++
T Consensus 565 yDS---------DWNPQ~DLQAmDRaHRIGQ-~K~V~V~RLiten 599 (971)
T KOG0385|consen 565 YDS---------DWNPQVDLQAMDRAHRIGQ-KKPVVVYRLITEN 599 (971)
T ss_pred ecC---------CCCchhhhHHHHHHHhhCC-cCceEEEEEeccc
Confidence 997 3355555666666666665 2246788888765
No 128
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.22 E-value=2.4e-10 Score=140.90 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=82.3
Q ss_pred hcCCCCEEEEec-hhHHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC---
Q 003593 454 NVRSGDCVVAFS-RREIFEVKMAIEKH---TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN--- 526 (808)
Q Consensus 454 ~~~~g~~II~fs-rk~~~~l~~~L~~~---~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip--- 526 (808)
...+|.++|+|+ .+....++..|... .++. ++..+.. ..|.++++.|+. ++..||+||+.+.+|||+|
T Consensus 671 ~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~--~~~~iLlgt~sf~EGVD~~g~~ 745 (850)
T TIGR01407 671 AITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNN--GEKAILLGTSSFWEGVDFPGNG 745 (850)
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHh--CCCeEEEEcceeecccccCCCc
Confidence 445688888885 57777788877641 2333 3333333 578899999975 8899999999999999995
Q ss_pred ccEEEEeCCccCCCC---------------------ccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 527 IRRVVFYSLSKYNGD---------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 527 V~~VI~~~~~K~dg~---------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
...||...+|--+.. ...|..+-.+.|-+||.=|...+ .|.++.+..
T Consensus 746 l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D--~G~v~ilD~ 813 (850)
T TIGR01407 746 LVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREND--RGSIVILDR 813 (850)
T ss_pred eEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCc--eEEEEEEcc
Confidence 678888887632111 12345567789999999998873 687777643
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=2.3e-09 Score=127.86 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=71.1
Q ss_pred HCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHHHH-HHH---HhcCcEEEEcccHHHHHHHHHHHHHc----cccccc
Q 003593 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNAL-QRF---MEAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSL 347 (808)
Q Consensus 276 ~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~L-~~L---~~~~~~lvl~Ptr~La~Qi~~~l~~~----g~~~~l 347 (808)
.+|+ .|+.+|-+..+.-.+--|+.+.||+|||+++. +++ +.+..+-|++|+--||.+-++.+..+ |+.+++
T Consensus 78 ~lGm-~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred HhCC-CcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 4453 44444433222223444679999999999943 333 34567788999999999999998765 778887
Q ss_pred ccccccccc----ccCCeEEEeeec-----ccCC----------CceeEEEEccchhhh
Q 003593 348 LTGQEKKLV----PFSNHIACTVEM-----VSTD----------EMYDVAVIDEIQMMS 387 (808)
Q Consensus 348 ~~g~~~~~~----~~~~~i~~t~e~-----l~~~----------~lv~~vVIDEAh~i~ 387 (808)
+++...... -...++++|... |... +.+.++||||+|.++
T Consensus 157 i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 157 VTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 777643322 124556666422 2111 227899999999883
No 130
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.13 E-value=2e-10 Score=126.97 Aligned_cols=272 Identities=15% Similarity=0.119 Sum_probs=152.5
Q ss_pred hhHHHhCCCeEEEEecCCCcHHHHH----H--HHHHhcCcEEEEcccHHHHHHHHHHHHHc--------ccccccccccc
Q 003593 287 PFARVMKRKIIYHCGPTNSGKTYNA----L--QRFMEAKKGIYCSPLRLLAMEVFDKVNAL--------GVYCSLLTGQE 352 (808)
Q Consensus 287 ~i~~~l~grdvlv~apTGSGKTl~~----L--~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~--------g~~~~l~~g~~ 352 (808)
.+.-+.+|+.+++.-.|.+||++|+ . +.+......+++.|+.+|++++...+.-. ...+....|..
T Consensus 294 ~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~s 373 (1034)
T KOG4150|consen 294 LLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLS 373 (1034)
T ss_pred HHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCC
Confidence 4445678999999999999999992 2 22223446799999999999875543211 01111222221
Q ss_pred cccc-----ccCCeEEEeeecccCCCc------------eeEEEEccchhhhcccchhHHHHHHhhcccc---------c
Q 003593 353 KKLV-----PFSNHIACTVEMVSTDEM------------YDVAVIDEIQMMSDACRGYAWTRALLGLMAD---------E 406 (808)
Q Consensus 353 ~~~~-----~~~~~i~~t~e~l~~~~l------------v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~---------~ 406 (808)
.... .....++..+.++....+ ..++++||+|...-. +|......+..|..- -
T Consensus 374 E~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~ 452 (1034)
T KOG4150|consen 374 ETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEASINM 452 (1034)
T ss_pred chhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHhhcCc
Confidence 1110 112233333333211111 467899999988643 444433333333211 1
Q ss_pred eeccCCchHHH---HHHHHhhhc--------CCCcEEEEeeecchh------------hhhHHHHHHHHhhcCCCCEEEE
Q 003593 407 IHLCGDPSVLD---VVRKICSET--------GDELHEQHYERFKPL------------VVEAKTLLGDLRNVRSGDCVVA 463 (808)
Q Consensus 407 i~l~~s~~~~~---~i~~l~~~~--------~~~~~~~~~~r~~~~------------~~~~~~ll~~l~~~~~g~~II~ 463 (808)
..+-++++..+ ....+.... +...-...+...+|. ..+...++..+.. ..-.+|-|
T Consensus 453 ~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~-~~~R~IAF 531 (1034)
T KOG4150|consen 453 GVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ-HGLRCIAF 531 (1034)
T ss_pred ceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH-cCCcEEEe
Confidence 11122332222 222222111 111111122222221 1111233332322 22345655
Q ss_pred e-chhHHHHHHHHHH---HhcC----CeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeC
Q 003593 464 F-SRREIFEVKMAIE---KHTN----HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYS 534 (808)
Q Consensus 464 f-srk~~~~l~~~L~---~~~g----~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~ 534 (808)
| +|+-|+-+....+ ...| -.+..|.||.+.++|+++....- .|+..-+|||++++-||||. .+.|++.+
T Consensus 532 C~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F--~G~L~giIaTNALELGIDIG~LDAVl~~G 609 (1034)
T KOG4150|consen 532 CPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF--GGKLCGIIATNALELGIDIGHLDAVLHLG 609 (1034)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh--CCeeeEEEecchhhhccccccceeEEEcc
Confidence 5 4544443333222 1222 23567889999999999998874 49999999999999999996 99999999
Q ss_pred CccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEe
Q 003593 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~ 574 (808)
. |.|++.+.|..|||||..+ ...++.+.
T Consensus 610 F---------P~S~aNl~QQ~GRAGRRNk---~SLavyva 637 (1034)
T KOG4150|consen 610 F---------PGSIANLWQQAGRAGRRNK---PSLAVYVA 637 (1034)
T ss_pred C---------chhHHHHHHHhccccccCC---CceEEEEE
Confidence 9 9999999999999999988 55554443
No 131
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.06 E-value=5.9e-10 Score=111.53 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=84.7
Q ss_pred CCCCCCcchh--hhHHHhCC-CeEEEEecCCCcHHHHHHHHHH----hc--CcEEEEcccHHHHHHHHHHHHHccc----
Q 003593 277 ADLTKPHTWF--PFARVMKR-KIIYHCGPTNSGKTYNALQRFM----EA--KKGIYCSPLRLLAMEVFDKVNALGV---- 343 (808)
Q Consensus 277 ~g~~~pt~~~--~i~~~l~g-rdvlv~apTGSGKTl~~L~~L~----~~--~~~lvl~Ptr~La~Qi~~~l~~~g~---- 343 (808)
.++..|+++| .+..++.. +.+++.+|||+|||.+++..+. .. .+++|++|++.++.|+.+.+...+.
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 3455555553 55666777 9999999999999997444433 22 5789999999999999999988753
Q ss_pred -cccccccccccc----c-ccC-CeEEEeeeccc----C----CCceeEEEEccchhhhcccchhHHHHHHhhcc
Q 003593 344 -YCSLLTGQEKKL----V-PFS-NHIACTVEMVS----T----DEMYDVAVIDEIQMMSDACRGYAWTRALLGLM 403 (808)
Q Consensus 344 -~~~l~~g~~~~~----~-~~~-~~i~~t~e~l~----~----~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~ 403 (808)
....+.+..... . ... ..+++|+..+. . ...++++||||||++....+...+..++..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 233334433110 1 112 55566653321 1 11278999999999997557777777777663
No 132
>PF12513 SUV3_C: Mitochondrial degradasome RNA helicase subunit C terminal; InterPro: IPR022192 This domain family is found in bacteria and eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00271 from PFAM. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 3RC8_A 3RC3_A.
Probab=99.04 E-value=3.9e-10 Score=88.19 Aligned_cols=49 Identities=39% Similarity=0.693 Sum_probs=44.3
Q ss_pred HHHHHHHhhHhhhhhhhhcccCcccCCchHHHHHHHHHHHHHHHHhhhcc
Q 003593 708 LLDLETKHQVLSMYLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNA 757 (808)
Q Consensus 708 l~~le~~~~~l~~y~wl~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 757 (808)
|..||..|+.+++|+|||+||| +.|||.+.|.+++..+++.|++.|.+.
T Consensus 1 L~~LE~~hk~l~lYlWLs~Rfp-~~F~d~e~a~~~k~~~~~~I~~~L~~~ 49 (49)
T PF12513_consen 1 LQRLESLHKVLDLYLWLSYRFP-DVFPDRELAEELKKRVEEKIEEGLERI 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-T-TTSTTHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHcc-cccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999999999999998 799999999999999999999999763
No 133
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.99 E-value=1.1e-09 Score=102.94 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=69.4
Q ss_pred CeEEEEecCCCcHHHHHHHHHH------hcCcEEEEcccHHHHHHHHHHHHHcc---ccccccccccccc------cccC
Q 003593 295 KIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNALG---VYCSLLTGQEKKL------VPFS 359 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~L~~L~------~~~~~lvl~Ptr~La~Qi~~~l~~~g---~~~~l~~g~~~~~------~~~~ 359 (808)
+.+++.+|||+|||+.++..+. ..++++|++|++.|+.|+.+.+.... ....+..+..... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 4689999999999998544332 33688999999999999999988765 4455555544332 2344
Q ss_pred CeEEEeeecccC--------CCceeEEEEccchhhhcccchh
Q 003593 360 NHIACTVEMVST--------DEMYDVAVIDEIQMMSDACRGY 393 (808)
Q Consensus 360 ~~i~~t~e~l~~--------~~lv~~vVIDEAh~i~d~~~g~ 393 (808)
..+++|++.+.. ...++++||||+|.+....+..
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHH
Confidence 556777754311 1137899999999998764444
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.98 E-value=6.2e-08 Score=115.40 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=71.4
Q ss_pred HCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHHH-HHHHH---hcCcEEEEcccHHHHHHHHHHHHHc----cccccc
Q 003593 276 SADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA-LQRFM---EAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSL 347 (808)
Q Consensus 276 ~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~-L~~L~---~~~~~lvl~Ptr~La~Qi~~~l~~~----g~~~~l 347 (808)
.+|++ |+.+|-+..+.-.+.-|+.+.||.|||+++ +++.+ .+..+-||+++..||..-++.+..+ |..+++
T Consensus 72 ~lG~r-~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 72 TLGLR-HFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred HhCCC-CCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 45665 555554443344566788999999999994 34333 3556788899999999998887654 777776
Q ss_pred ccccccccc----ccCCeEEEee-----ecccC----------CCceeEEEEccchhhh
Q 003593 348 LTGQEKKLV----PFSNHIACTV-----EMVST----------DEMYDVAVIDEIQMMS 387 (808)
Q Consensus 348 ~~g~~~~~~----~~~~~i~~t~-----e~l~~----------~~lv~~vVIDEAh~i~ 387 (808)
+.+...... -...++++|. +.|.. .+.+.++||||||.++
T Consensus 151 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 151 IQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 655433221 1234555553 11111 1227899999999873
No 135
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.94 E-value=4.9e-08 Score=114.98 Aligned_cols=265 Identities=15% Similarity=0.232 Sum_probs=150.3
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHh-----cCcEEEEcccHHHHHHHHHHHHHccccc-ccccccccccc--ccCCeEE
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFME-----AKKGIYCSPLRLLAMEVFDKVNALGVYC-SLLTGQEKKLV--PFSNHIA 363 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~-----~~~~lvl~Ptr~La~Qi~~~l~~~g~~~-~l~~g~~~~~~--~~~~~i~ 363 (808)
..+...++-+|.|||||.+.+.++.. ..++|+|+.+++|+.++..+++..+..- ..+........ .....++
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLi 126 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLI 126 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEE
Confidence 45667888999999999997777754 3689999999999999999999876531 11111111111 1124455
Q ss_pred EeeecccC---C--CceeEEEEccchhhhcccchhHHHH---H---Hhh-ccccceeccCCchH----HHHHHHHhhhcC
Q 003593 364 CTVEMVST---D--EMYDVAVIDEIQMMSDACRGYAWTR---A---LLG-LMADEIHLCGDPSV----LDVVRKICSETG 427 (808)
Q Consensus 364 ~t~e~l~~---~--~lv~~vVIDEAh~i~d~~~g~~~~~---~---l~~-l~~~~i~l~~s~~~----~~~i~~l~~~~~ 427 (808)
+.++.+.. . ..+++|||||+--++..-+...+++ . +.. +......++.++++ .+.++.+.....
T Consensus 127 vqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~ 206 (824)
T PF02399_consen 127 VQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDEN 206 (824)
T ss_pred EEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCc
Confidence 55554422 1 1289999999987765433332221 1 111 11122233444433 333333221111
Q ss_pred CCcEEEEeee----------------------cch----------------------hhhhHHHHHHHH-hhcCCCCEEE
Q 003593 428 DELHEQHYER----------------------FKP----------------------LVVEAKTLLGDL-RNVRSGDCVV 462 (808)
Q Consensus 428 ~~~~~~~~~r----------------------~~~----------------------~~~~~~~ll~~l-~~~~~g~~II 462 (808)
-.++...|.. .++ ...+.......| .....|+.|.
T Consensus 207 i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIc 286 (824)
T PF02399_consen 207 IHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNIC 286 (824)
T ss_pred EEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEE
Confidence 1222222210 000 000011222222 3445566666
Q ss_pred Ee-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC---ccEEEEe--CCc
Q 003593 463 AF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IRRVVFY--SLS 536 (808)
Q Consensus 463 ~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip---V~~VI~~--~~~ 536 (808)
+| +.....++...+.+..+.++..++|.-+.++ .+.| ++++|++=|.++..|++++ .+-|.-| ...
T Consensus 287 vfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W----~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~ 358 (824)
T PF02399_consen 287 VFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW----KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMS 358 (824)
T ss_pred EEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc----cceeEEEEeceEEEEeccchhhceEEEEEecCCC
Confidence 56 4555555555555556889999998777662 2446 7899999999999999994 4444333 221
Q ss_pred cCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
+ -.+..+.+|.+||.-.-.. ...+.++.
T Consensus 359 ~-------gpd~~s~~Q~lgRvR~l~~----~ei~v~~d 386 (824)
T PF02399_consen 359 Y-------GPDMVSVYQMLGRVRSLLD----NEIYVYID 386 (824)
T ss_pred C-------CCcHHHHHHHHHHHHhhcc----CeEEEEEe
Confidence 1 2366789999999966665 55555553
No 136
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.91 E-value=1.2e-07 Score=109.79 Aligned_cols=112 Identities=25% Similarity=0.370 Sum_probs=83.0
Q ss_pred cCCCCEEEEech-hHHHHHHHHHHH-hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccccc-CccEEE
Q 003593 455 VRSGDCVVAFSR-REIFEVKMAIEK-HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVV 531 (808)
Q Consensus 455 ~~~g~~II~fsr-k~~~~l~~~L~~-~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDi-pV~~VI 531 (808)
...|..++.|+. ....++...+.. ..|+.++-+-|..|...|...+++|++.....-.|++|-|.|-|+|+ ..++||
T Consensus 543 ~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVI 622 (923)
T KOG0387|consen 543 KKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVI 622 (923)
T ss_pred hhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEE
Confidence 345667777853 444444444443 46999999999999999999999998623334558899999999999 599999
Q ss_pred EeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 532 FYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 532 ~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
.||+ --+++.=.|-.-||=|.|.. ..=.+|.|.+.
T Consensus 623 IfDP---------dWNPStD~QAreRawRiGQk-kdV~VYRL~t~ 657 (923)
T KOG0387|consen 623 IFDP---------DWNPSTDNQARERAWRIGQK-KDVVVYRLMTA 657 (923)
T ss_pred EECC---------CCCCccchHHHHHHHhhcCc-cceEEEEEecC
Confidence 9998 44666777878888888862 23456667653
No 137
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.90 E-value=1.5e-07 Score=111.15 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=88.8
Q ss_pred chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCC-eeEEEECCCCcccccc-CccEEEEeCCccCCCCc
Q 003593 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNE-FDVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDK 542 (808)
Q Consensus 465 srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~-~~ILVATda~~~GIDi-pV~~VI~~~~~K~dg~~ 542 (808)
+-+...++...+.+..|+.++.+||.|+..+|.++.+.|+++.+. .-.|.+|-|.|.|||+ ...+||.+|.
T Consensus 603 ny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~------- 675 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP------- 675 (776)
T ss_pred cHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC-------
Confidence 457788888888877799999999999999999999999986666 4456678899999998 7999999999
Q ss_pred cccCCHhHHHHHhCccCCCCCCCCceEEEEEec---CCHHHHHHH
Q 003593 543 IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL---DDLDYLIEC 584 (808)
Q Consensus 543 ~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~---~d~~~l~~~ 584 (808)
..+++.=.|-++||=|+|.. -.-++|.|++ .++..+.+.
T Consensus 676 --dWNPa~d~QAmaR~~RdGQK-k~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 676 --DWNPAVDQQAMARAWRDGQK-KPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred --CCCchhHHHHHHHhccCCCc-ceEEEEEeecCCCchHHHHHHH
Confidence 77999999999999999982 2345555653 344444443
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.87 E-value=8.1e-09 Score=102.95 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=40.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH-hcCcEEEEcccHHHHHHHHHHHHHcc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM-EAKKGIYCSPLRLLAMEVFDKVNALG 342 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~-~~~~~lvl~Ptr~La~Qi~~~l~~~g 342 (808)
..+.+++.||||||||.+++..+. ...++||++|+..|+.|+.+.+..++
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhh
Confidence 368999999999999999553222 12289999999999999999996554
No 139
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.87 E-value=6.7e-08 Score=116.06 Aligned_cols=110 Identities=22% Similarity=0.293 Sum_probs=87.4
Q ss_pred CCCEEEEech-hHHHH-HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCCeeEEEECCCCccccccC-ccEEEE
Q 003593 457 SGDCVVAFSR-REIFE-VKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ-DNEFDVLVASDAVGMGLNLN-IRRVVF 532 (808)
Q Consensus 457 ~g~~II~fsr-k~~~~-l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~-~g~~~ILVATda~~~GIDip-V~~VI~ 532 (808)
.|..|++||+ ..+.+ |+.+|. ..++..--+-|..+.+.|...++.|+++ +...-.|.||-|.|-|||+- .+.||.
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~-~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLS-LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHH-HcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 5678899986 44544 455554 4599999999999999999999999874 34577899999999999996 999999
Q ss_pred eCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 533 ~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
||- --++..=+|-.-||-|-|. ...=.+|.|++.+
T Consensus 777 FDS---------DWNPQNDLQAqARaHRIGQ-kk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 777 FDS---------DWNPQNDLQAQARAHRIGQ-KKHVNVYRLVTKN 811 (1373)
T ss_pred eCC---------CCCcchHHHHHHHHHhhcc-cceEEEEEEecCC
Confidence 997 4467777888888888886 2346788888754
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.85 E-value=1.2e-07 Score=112.57 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=83.1
Q ss_pred HHHHHHhh-cCCCCEEEEec--hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRN-VRSGDCVVAFS--RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~-~~~g~~II~fs--rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+.. +..|..|++.| -...+.+...|.+. |+...++++.-. +++..+=. .+ .-.-.|.|||+.+|||-
T Consensus 414 Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~-gi~h~vLNAk~~--e~EA~IIa-~A-G~~GaVTIATNMAGRGT 488 (925)
T PRK12903 414 AVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA-NIPHTVLNAKQN--AREAEIIA-KA-GQKGAITIATNMAGRGT 488 (925)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-CCCceeecccch--hhHHHHHH-hC-CCCCeEEEecccccCCc
Confidence 34444432 34555555543 46777888888765 899888988643 33322222 11 12568999999999999
Q ss_pred ccCcc---------EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 524 NLNIR---------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 524 DipV~---------~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
||-.. +||.... |.|.--=-|-.|||||.|. +|.+-.|++-++..++.
T Consensus 489 DI~Lg~~V~~~GGLhVIgTer---------heSrRIDnQLrGRaGRQGD---pGss~f~lSLeD~L~r~ 545 (925)
T PRK12903 489 DIKLSKEVLELGGLYVLGTDK---------AESRRIDNQLRGRSGRQGD---VGESRFFISLDDQLFRR 545 (925)
T ss_pred CccCchhHHHcCCcEEEeccc---------CchHHHHHHHhcccccCCC---CCcceEEEecchHHHHH
Confidence 99533 8898877 7777777799999999999 89998888765555543
No 141
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.84 E-value=9.1e-08 Score=115.42 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHHh-----cCCeEEEEcCCCCHHHHHHHHHHH---------------------hcC---CCCeeEEEE
Q 003593 465 SRREIFEVKMAIEKH-----TNHHCCVIYGALPPETRRQQANLF---------------------NDQ---DNEFDVLVA 515 (808)
Q Consensus 465 srk~~~~l~~~L~~~-----~g~~v~~lhg~l~~~~R~~~~~~F---------------------~~~---~g~~~ILVA 515 (808)
+-+.+.+++..|... ..+.+++||+..+...|..+.+.. .+. .+...|+||
T Consensus 765 nI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~ 844 (1110)
T TIGR02562 765 NIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLA 844 (1110)
T ss_pred CchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEE
Confidence 467888888888754 234689999999988888776543 110 246789999
Q ss_pred CCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCC
Q 003593 516 SDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564 (808)
Q Consensus 516 Tda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~ 564 (808)
|.+++.|+|++.+.+|-- |.++.+.+|++||..|.|..
T Consensus 845 Tqv~E~g~D~dfd~~~~~-----------~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 845 TPVEEVGRDHDYDWAIAD-----------PSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred eeeEEEEecccCCeeeec-----------cCcHHHHHHHhhcccccccC
Confidence 999999999999988875 67999999999999999873
No 142
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.78 E-value=6e-07 Score=110.03 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=77.6
Q ss_pred cCCCCEEEEec-hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC---ccEE
Q 003593 455 VRSGDCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IRRV 530 (808)
Q Consensus 455 ~~~g~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip---V~~V 530 (808)
..+|.++|+|+ .+....++..|... ...+ ...|.-. .|.+++++|+. ++..||++|+.+..|||+| ...|
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~-~~~~-l~Qg~~~--~~~~l~~~F~~--~~~~vLlG~~sFwEGVD~p~~~~~~v 718 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQW-QVSH-LAQEKNG--TAYNIKKRFDR--GEQQILLGLGSFWEGVDFVQADRMIE 718 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhc-CCcE-EEeCCCc--cHHHHHHHHHc--CCCeEEEecchhhCCCCCCCCCeEEE
Confidence 35678888885 56666777777543 4444 4444322 25568999975 7788999999999999994 5667
Q ss_pred EEeCCccCCC----------------C-----ccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 531 VFYSLSKYNG----------------D-----KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 531 I~~~~~K~dg----------------~-----~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
|...+|--.. . ...|.-+-.+.|-+||.=|...+ .|.++.+..
T Consensus 719 iI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D--~Gvv~ilD~ 782 (820)
T PRK07246 719 VITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQ--KSAVLILDR 782 (820)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCC--cEEEEEECC
Confidence 7777652211 0 12355567789999999998763 788777754
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=98.74 E-value=9.3e-08 Score=110.82 Aligned_cols=86 Identities=19% Similarity=0.236 Sum_probs=68.0
Q ss_pred cCCeEEEEc--CCCCHHHHHHHHHHHhc-CCCCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHh
Q 003593 480 TNHHCCVIY--GALPPETRRQQANLFND-QDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIA 555 (808)
Q Consensus 480 ~g~~v~~lh--g~l~~~~R~~~~~~F~~-~~g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~ 555 (808)
.++.+.+-| |.|...+|...+..-+. +..+++||-.--.+..|+|+| .+.||++++ -.+..+.+|-+
T Consensus 496 ~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~p---------r~smVDIVQaV 566 (1518)
T COG4889 496 KNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDP---------RSSMVDIVQAV 566 (1518)
T ss_pred CCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecC---------chhHHHHHHHH
Confidence 355666656 89999999655543321 457899998888999999999 999999998 56999999999
Q ss_pred CccCCCCCCCCceEEEEEe
Q 003593 556 GRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 556 GRAGR~G~~~~~G~~i~l~ 574 (808)
||..|-.+....|++|+=+
T Consensus 567 GRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 567 GRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred HHHHHhCcCCccceEEEEe
Confidence 9999976544568887754
No 144
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.69 E-value=2.6e-06 Score=98.78 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=86.3
Q ss_pred CCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEe
Q 003593 456 RSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFY 533 (808)
Q Consensus 456 ~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~ 533 (808)
..|+.|++||. ....++...+.+..+++..-+-|..+-.+|...+..|+....-.-.|.+|-+.|-|||+- .+.||.+
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIih 854 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIH 854 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEe
Confidence 45678999986 677777777777789999999999999999999999985333345688999999999995 9999999
Q ss_pred CCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 534 SLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 534 ~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
|+ -.++-.=.|---||-|.|.. ..-.+|.|++.+
T Consensus 855 D~---------dFNP~dD~QAEDRcHRvGQt-kpVtV~rLItk~ 888 (941)
T KOG0389|consen 855 DI---------DFNPYDDKQAEDRCHRVGQT-KPVTVYRLITKS 888 (941)
T ss_pred ec---------CCCCcccchhHHHHHhhCCc-ceeEEEEEEecC
Confidence 98 23333444555555555542 257888888765
No 145
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.64 E-value=1.5e-07 Score=109.47 Aligned_cols=277 Identities=17% Similarity=0.238 Sum_probs=161.7
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHHH----hcC-----cEEEEcccHHHHHHHHHHHHHc-ccccccccccccccc----
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRFM----EAK-----KGIYCSPLRLLAMEVFDKVNAL-GVYCSLLTGQEKKLV---- 356 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L~----~~~-----~~lvl~Ptr~La~Qi~~~l~~~-g~~~~l~~g~~~~~~---- 356 (808)
+-.++.+++-+.||+|||..+.+.|+ .++ .+.++-|+|..+..+.+++... +...+-..|...+..
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~p 469 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATP 469 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccc
Confidence 35678889999999999999555554 333 2355569999999999998654 444444455554432
Q ss_pred -ccCCeEEEeeecccC----C-CceeEEEEccchhhhcccchhHHHHHHhhcccc---ce--------------------
Q 003593 357 -PFSNHIACTVEMVST----D-EMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD---EI-------------------- 407 (808)
Q Consensus 357 -~~~~~i~~t~e~l~~----~-~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~---~i-------------------- 407 (808)
+...+..||.+.+.. + +-+.++++||+|+.--. +.-+..++..+..+ ..
T Consensus 470 rpyg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~ 547 (1282)
T KOG0921|consen 470 RPYGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSI 547 (1282)
T ss_pred ccccceeeeccchhhhhhhhcccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccc
Confidence 344567788765532 2 22899999999987421 11122222222110 00
Q ss_pred ---eccCC--ch---HHHHH-HHHhhhcCCCcEEEEe-----------------e--------------------ecchh
Q 003593 408 ---HLCGD--PS---VLDVV-RKICSETGDELHEQHY-----------------E--------------------RFKPL 441 (808)
Q Consensus 408 ---~l~~s--~~---~~~~i-~~l~~~~~~~~~~~~~-----------------~--------------------r~~~~ 441 (808)
.+.+. |. +...+ ..+........-.+.+ . +..+.
T Consensus 548 p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f 627 (1282)
T KOG0921|consen 548 PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPF 627 (1282)
T ss_pred cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchh
Confidence 00000 00 00000 0000000000000000 0 00000
Q ss_pred hhhHHHHHHHHhhc-CCCCEEEEec-hhHHHHHHHHHHHh------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEE
Q 003593 442 VVEAKTLLGDLRNV-RSGDCVVAFS-RREIFEVKMAIEKH------TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVL 513 (808)
Q Consensus 442 ~~~~~~ll~~l~~~-~~g~~II~fs-rk~~~~l~~~L~~~------~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~IL 513 (808)
.+- +.++..+... -++-+.+|.. -..+..|...++.. ..+.+...|+.++..+..++++.. +.|..+||
T Consensus 628 ~l~-Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~--p~gv~kii 704 (1282)
T KOG0921|consen 628 GLI-EALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPV--PEGVTKII 704 (1282)
T ss_pred HHH-HHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcc--cccccccc
Confidence 000 1122222222 2333334433 35666666666532 246788999999999999998888 66999999
Q ss_pred EECCCCcccccc-CccEEEEeCCccC------CCC---ccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 514 VASDAVGMGLNL-NIRRVVFYSLSKY------NGD---KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 514 VATda~~~GIDi-pV~~VI~~~~~K~------dg~---~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
+.|+++...|.+ ++.+||+.+..+- +.. -..+.|.....||.||+||... |.|..+++.
T Consensus 705 ~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~----G~~f~lcs~ 773 (1282)
T KOG0921|consen 705 LSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP----GFCFHLCSR 773 (1282)
T ss_pred cccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc----cccccccHH
Confidence 999999999999 5999998876431 111 3567889999999999999886 999988764
No 146
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.55 E-value=2.9e-06 Score=101.21 Aligned_cols=85 Identities=9% Similarity=-0.063 Sum_probs=61.8
Q ss_pred CCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHHc-c-ccccccccccccccc----------cCCeEEEee
Q 003593 303 TNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNAL-G-VYCSLLTGQEKKLVP----------FSNHIACTV 366 (808)
Q Consensus 303 TGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~~-g-~~~~l~~g~~~~~~~----------~~~~i~~t~ 366 (808)
+|||||..|+..+ ..++++||++|.+.|+.|+.++|++. | ..+.++++....... ...+++.|-
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 5999999977654 34668999999999999999999864 4 556666665443211 233455553
Q ss_pred -ecccCCCceeEEEEccchhhh
Q 003593 367 -EMVSTDEMYDVAVIDEIQMMS 387 (808)
Q Consensus 367 -e~l~~~~lv~~vVIDEAh~i~ 387 (808)
-++.|-..+.+|||||-|.-+
T Consensus 249 SAvFaP~~~LgLIIvdEEhd~s 270 (665)
T PRK14873 249 SAVFAPVEDLGLVAIWDDGDDL 270 (665)
T ss_pred eeEEeccCCCCEEEEEcCCchh
Confidence 455666668999999999765
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=4.2e-06 Score=99.98 Aligned_cols=94 Identities=19% Similarity=0.144 Sum_probs=62.0
Q ss_pred CCeEEEEecCCCcHHHHH-HHHHH---hcCcEEEEcccHHHHHHHHHHHHH----cccccccccccccccc----ccCCe
Q 003593 294 RKIIYHCGPTNSGKTYNA-LQRFM---EAKKGIYCSPLRLLAMEVFDKVNA----LGVYCSLLTGQEKKLV----PFSNH 361 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~-L~~L~---~~~~~lvl~Ptr~La~Qi~~~l~~----~g~~~~l~~g~~~~~~----~~~~~ 361 (808)
.+--|+.+.||-|||+++ +++.+ .+..+-||++.--||..=++.+.. +|..++++.+...... -...+
T Consensus 98 h~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~~DI 177 (939)
T PRK12902 98 HEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDI 177 (939)
T ss_pred cCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcCCCe
Confidence 344567999999999994 34433 455677889999999888777765 4778877665432221 13455
Q ss_pred EEEeee----------ccc-C----CCceeEEEEccchhhh
Q 003593 362 IACTVE----------MVS-T----DEMYDVAVIDEIQMMS 387 (808)
Q Consensus 362 i~~t~e----------~l~-~----~~lv~~vVIDEAh~i~ 387 (808)
+++|.. |.. . .+.+.++||||||.++
T Consensus 178 tYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 178 TYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 666631 111 1 1227899999999874
No 148
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.47 E-value=2.8e-07 Score=87.83 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH-----HhcCcEEEEcccHHHHHHHHHHHHHcccccc--ccccccccccccCCeEEEe
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF-----MEAKKGIYCSPLRLLAMEVFDKVNALGVYCS--LLTGQEKKLVPFSNHIACT 365 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L-----~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~--l~~g~~~~~~~~~~~i~~t 365 (808)
.|+..++-..+|+|||.-.|+.+ .+++++|||.|||.++.++.+.|+...+.+. +..+... ....+-+.+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~---g~~~i~vMc 79 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHF---GSSIIDVMC 79 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS-------SSSSEEEEE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeecccc---CCCcccccc
Confidence 56778899999999999766544 4578999999999999999999987654432 2212111 112222222
Q ss_pred ---e--ecccCCCc--eeEEEEccchhhh
Q 003593 366 ---V--EMVSTDEM--YDVAVIDEIQMMS 387 (808)
Q Consensus 366 ---~--e~l~~~~l--v~~vVIDEAh~i~ 387 (808)
. -++.+.+. +++||+||||..-
T Consensus 80 ~at~~~~~~~p~~~~~yd~II~DEcH~~D 108 (148)
T PF07652_consen 80 HATYGHFLLNPCRLKNYDVIIMDECHFTD 108 (148)
T ss_dssp HHHHHHHHHTSSCTTS-SEEEECTTT--S
T ss_pred cHHHHHHhcCcccccCccEEEEeccccCC
Confidence 1 23343333 9999999999964
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.34 E-value=5.1e-05 Score=84.21 Aligned_cols=129 Identities=23% Similarity=0.292 Sum_probs=85.8
Q ss_pred CCCEEEEec-h-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeE-EEECCCCccccccC-ccEEEE
Q 003593 457 SGDCVVAFS-R-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV-LVASDAVGMGLNLN-IRRVVF 532 (808)
Q Consensus 457 ~g~~II~fs-r-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~I-LVATda~~~GIDip-V~~VI~ 532 (808)
++...++|+ . .-.+.+...+.+. +....-+.|..++..|....+.|.. +.++.| +++-.++++||++. .+.||+
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r-~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKR-KVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHc-CCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeecccceeeeccceEEE
Confidence 344555554 3 3344555556554 8888999999999999999999974 555555 44557899999996 999999
Q ss_pred eCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEec-CCHHHHHHHhcCCchhhHHhC
Q 003593 533 YSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL-DDLDYLIECLKQPFEVVKKVG 596 (808)
Q Consensus 533 ~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~-~d~~~l~~~l~~~~~~~~~~~ 596 (808)
..+ +.++.-.+|-=-|+-|-|.....+..|+... .-++++..++.+.+.-+...+
T Consensus 569 aEL---------~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 569 AEL---------HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEe---------cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 999 6677777777777777776322333333322 224555556655544444433
No 150
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.32 E-value=2.6e-05 Score=94.23 Aligned_cols=105 Identities=25% Similarity=0.266 Sum_probs=73.2
Q ss_pred EEEEec-hhHHHHHHHHHHHhcCCeEE--EEcCCCCHHHHHHHHHHHhcCCCCeeEEE-ECCCCcccccc-CccEEEEeC
Q 003593 460 CVVAFS-RREIFEVKMAIEKHTNHHCC--VIYGALPPETRRQQANLFNDQDNEFDVLV-ASDAVGMGLNL-NIRRVVFYS 534 (808)
Q Consensus 460 ~II~fs-rk~~~~l~~~L~~~~g~~v~--~lhg~l~~~~R~~~~~~F~~~~g~~~ILV-ATda~~~GIDi-pV~~VI~~~ 534 (808)
++|||- +...+-+-+.|.+..-..+. .+-|+.++..|.++.++|++ +..++||+ +|-+.|-|+|+ ..+.||+++
T Consensus 1343 iLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvE 1421 (1549)
T KOG0392|consen 1343 ILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVE 1421 (1549)
T ss_pred eEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEe
Confidence 444443 34455555566654333444 67799999999999999986 44788765 67899999999 599999987
Q ss_pred CccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
- --++..=.|-+-||-|-|. ...=-+|.|++
T Consensus 1422 H---------DWNPMrDLQAMDRAHRIGQ-KrvVNVyRlIt 1452 (1549)
T KOG0392|consen 1422 H---------DWNPMRDLQAMDRAHRIGQ-KRVVNVYRLIT 1452 (1549)
T ss_pred c---------CCCchhhHHHHHHHHhhcC-ceeeeeeeehh
Confidence 5 2244555899999999997 11233445544
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.17 E-value=0.00038 Score=77.36 Aligned_cols=105 Identities=20% Similarity=0.294 Sum_probs=77.9
Q ss_pred EEEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCee-EEEECCCCccccccC-ccEEEEeCCcc
Q 003593 461 VVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFD-VLVASDAVGMGLNLN-IRRVVFYSLSK 537 (808)
Q Consensus 461 II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~-ILVATda~~~GIDip-V~~VI~~~~~K 537 (808)
-|+||+ ..-.++..+-....|+.|+-+-|+|++..|...++.|.+ +-.+. .||+-.+.|..+|+- ...|...|+
T Consensus 641 sIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDP-- 717 (791)
T KOG1002|consen 641 SIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDP-- 717 (791)
T ss_pred hhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeecc--
Confidence 455554 334444444444569999999999999999999999975 33344 477888999999995 999999998
Q ss_pred CCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
+-+++-=.|---|.-|-|. +.+=.++.|+-+
T Consensus 718 -------WWNpaVe~Qa~DRiHRIGQ-~rPvkvvrf~iE 748 (791)
T KOG1002|consen 718 -------WWNPAVEWQAQDRIHRIGQ-YRPVKVVRFCIE 748 (791)
T ss_pred -------cccHHHHhhhhhhHHhhcC-ccceeEEEeehh
Confidence 7777777776667777665 335677788744
No 152
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.03 E-value=8.5e-05 Score=92.58 Aligned_cols=270 Identities=19% Similarity=0.132 Sum_probs=150.1
Q ss_pred CCCeEEEEecCCCcHHHH--HHHH----HHhcCcEEEEcccHHHHHHHHHHHHHccccccccc----cccccc-c--ccC
Q 003593 293 KRKIIYHCGPTNSGKTYN--ALQR----FMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT----GQEKKL-V--PFS 359 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~--~L~~----L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~----g~~~~~-~--~~~ 359 (808)
.++.-++.=-||||||+. ++.. +...+.+++|+-++.|-.|+.+.+.+++..+.... +.+... . ...
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~ 351 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKG 351 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCC
Confidence 345688899999999998 2222 23456889999999999999999999865544311 111111 1 124
Q ss_pred CeEEEeeecccCCC----------ceeEEEEccchhhhcccchhHHHHHHhhcc-ccceeccCCchHHHHHHHHhhh---
Q 003593 360 NHIACTVEMVSTDE----------MYDVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIHLCGDPSVLDVVRKICSE--- 425 (808)
Q Consensus 360 ~~i~~t~e~l~~~~----------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~-~~~i~l~~s~~~~~~i~~l~~~--- 425 (808)
.++++|+..+.... .==+||+||||+-- +|..-..+-.+++ +..+.++|+|-..+....-...
T Consensus 352 ~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~~a~~~gFTGTPi~~~d~~tt~~~fg~ 428 (962)
T COG0610 352 KIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALKKAIFIGFTGTPIFKEDKDTTKDVFGD 428 (962)
T ss_pred cEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhccceEEEeeCCccccccccchhhhhcc
Confidence 67778875443221 12378999999975 3443333333333 4445566666433322200000
Q ss_pred ----------cCCCcE-EEEeeecchh-----------------------h----hh-------------------HHHH
Q 003593 426 ----------TGDELH-EQHYERFKPL-----------------------V----VE-------------------AKTL 448 (808)
Q Consensus 426 ----------~~~~~~-~~~~~r~~~~-----------------------~----~~-------------------~~~l 448 (808)
..+..+ ...|.....+ . .. .+.+
T Consensus 429 ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i 508 (962)
T COG0610 429 YLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDI 508 (962)
T ss_pred eeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHH
Confidence 001000 0011000000 0 00 0011
Q ss_pred HHHHh--hcCCCCEEEEe-chhHHHHHHHHHHHhc----------C------------CeEEEEcCCCCHHHHHHHHHHH
Q 003593 449 LGDLR--NVRSGDCVVAF-SRREIFEVKMAIEKHT----------N------------HHCCVIYGALPPETRRQQANLF 503 (808)
Q Consensus 449 l~~l~--~~~~g~~II~f-srk~~~~l~~~L~~~~----------g------------~~v~~lhg~l~~~~R~~~~~~F 503 (808)
..... ...++.+.+++ +++-+..++....... + ......|... ...+.....+|
T Consensus 509 ~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~ 587 (962)
T COG0610 509 YDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDLIKRF 587 (962)
T ss_pred HHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhhhhhh
Confidence 12221 22344555555 4553555444432210 0 0000012222 23333444554
Q ss_pred hcCCCCeeEEEECCCCccccccCccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCC-CCceEEEEEec
Q 003593 504 NDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI-YPDGLTTTLNL 575 (808)
Q Consensus 504 ~~~~g~~~ILVATda~~~GIDipV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~-~~~G~~i~l~~ 575 (808)
..++...++||-+|.+-+|.|-|+=+++-.|- |.---..+|-+-|+.|.-.. .+.|.++.|..
T Consensus 588 ~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK---------~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 588 KLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK---------PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred cCcCCCCCEEEEEccccccCCccccceEEecc---------ccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 33678999999999999999999777777786 77888899999999997654 46899998875
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.91 E-value=6.5e-05 Score=89.51 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=81.4
Q ss_pred CEEEEechhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCe-eEEEECCCCccccccC-ccEEEEeCCc
Q 003593 459 DCVVAFSRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEF-DVLVASDAVGMGLNLN-IRRVVFYSLS 536 (808)
Q Consensus 459 ~~II~fsrk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~-~ILVATda~~~GIDip-V~~VI~~~~~ 536 (808)
.+++||..+.+..+........+++..-+-|....++|-..++.|+.|+..+ ..|.+|-+.|.|+|+- .+.||.+|.
T Consensus 728 RVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifds- 806 (1157)
T KOG0386|consen 728 RVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDS- 806 (1157)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecC-
Confidence 3444555566665555555555788999999999999999999999866554 4578999999999996 999999997
Q ss_pred cCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
-.++-...|+--||-|-|.. ..-.++.+.+
T Consensus 807 --------dwnp~~d~qaqdrahrigq~-~evRv~rl~t 836 (1157)
T KOG0386|consen 807 --------DWNPHQDLQAQDRAHRIGQK-KEVRVLRLIT 836 (1157)
T ss_pred --------CCCchhHHHHHHHHHHhhch-hheeeeeeeh
Confidence 44788899999999998872 2334444443
No 154
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.85 E-value=6.3e-05 Score=81.23 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=70.9
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH---hcC------cEEEEcccHHHHHHHHHHHHHccc----ccccccccc------
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM---EAK------KGIYCSPLRLLAMEVFDKVNALGV----YCSLLTGQE------ 352 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~---~~~------~~lvl~Ptr~La~Qi~~~l~~~g~----~~~l~~g~~------ 352 (808)
...+.+++.-.+|+|||+.++..+. ..+ .+|||+|. .+..++..++.++.. .+.++.|..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 4567888899999999999554433 221 48999999 888899999988753 334444544
Q ss_pred ccccccCCeEEEeeeccc-----CC------CceeEEEEccchhhhcccchhHHHHHHhhccccc-eeccCCc
Q 003593 353 KKLVPFSNHIACTVEMVS-----TD------EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADE-IHLCGDP 413 (808)
Q Consensus 353 ~~~~~~~~~i~~t~e~l~-----~~------~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~-i~l~~s~ 413 (808)
.........+++|.+.+. .. ..+++|||||+|.+.+ ........+..+.+.. +.++++|
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~~~l~~l~~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRYKALRKLRARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHHHHHHCCCECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEeccccccc--ccccccccccccccceEEeecccc
Confidence 122233456677766665 11 1189999999999954 3444555555555443 3445555
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.79 E-value=0.00085 Score=77.62 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=65.9
Q ss_pred HHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeE-EEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHH
Q 003593 474 MAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDV-LVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQV 551 (808)
Q Consensus 474 ~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~I-LVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y 551 (808)
..|.+ .|+....+||.....+|..+++.|+...|..+| |++=.+.|.|||+- ..++|..|+. -++.-=
T Consensus 764 ~hi~~-~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH---------WNPaLE 833 (901)
T KOG4439|consen 764 KHIQK-GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH---------WNPALE 833 (901)
T ss_pred HHHhh-CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc---------cCHHHH
Confidence 34443 589999999999999999999999875664555 55668889999995 9999999994 477788
Q ss_pred HHHhCccCCCCC
Q 003593 552 KQIAGRAGRRGS 563 (808)
Q Consensus 552 ~Qr~GRAGR~G~ 563 (808)
.|-.-|.-|.|.
T Consensus 834 qQAcDRIYR~GQ 845 (901)
T KOG4439|consen 834 QQACDRIYRMGQ 845 (901)
T ss_pred HHHHHHHHHhcc
Confidence 888889999887
No 156
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.67 E-value=9.8e-05 Score=87.40 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=42.8
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH------hcCcEEEEcccHHHHHHHHHHHHHcc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNALG 342 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~------~~~~~lvl~Ptr~La~Qi~~~l~~~g 342 (808)
.+++.+++.||||+|||++|+.+.+ .++++||++||++|+.|+++.+..+.
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 5688999999999999999776654 25788999999999999998776543
No 157
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.52 E-value=2.8e-05 Score=92.97 Aligned_cols=109 Identities=24% Similarity=0.220 Sum_probs=77.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH------hcCcEEEEcccHHHHHHHHHHHHHc----cccccccccccccc---cccC
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNAL----GVYCSLLTGQEKKL---VPFS 359 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~------~~~~~lvl~Ptr~La~Qi~~~l~~~----g~~~~l~~g~~~~~---~~~~ 359 (808)
...++++.+|||+|||.++-.++. ...+++|++|..+|+..-.+.+... |++..-.+|+.... ...+
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~ 1021 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREA 1021 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecC
Confidence 355778899999999999655544 2458899999999999988887764 45555556665543 3345
Q ss_pred CeEEEeeecccCCC----------ceeEEEEccchhhhcccchhHHHHHHhhc
Q 003593 360 NHIACTVEMVSTDE----------MYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (808)
Q Consensus 360 ~~i~~t~e~l~~~~----------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l 402 (808)
..+++|++...... .++.+|+||.|++.+ ++|+.+..+....
T Consensus 1022 ~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~ 1073 (1230)
T KOG0952|consen 1022 DIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRM 1073 (1230)
T ss_pred ceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeecc
Confidence 66777776653221 178899999999986 4777776554443
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.50 E-value=0.013 Score=66.59 Aligned_cols=122 Identities=14% Similarity=0.150 Sum_probs=86.1
Q ss_pred HHHHHHh-hcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCC--Cccc
Q 003593 447 TLLGDLR-NVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA--VGMG 522 (808)
Q Consensus 447 ~ll~~l~-~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda--~~~G 522 (808)
.++-.+. ....+.++||. |--+=..+...|.+. +...+.+|--.++.+-.++-..|.. |+.+||+-|-= +=+=
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~-~~sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TER~HFfrR 365 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE-NISFVQISEYTSNSDISRARSQFFH--GRKPILLYTERFHFFRR 365 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc-CCeEEEecccCCHHHHHHHHHHHHc--CCceEEEEEhHHhhhhh
Confidence 4555555 45556677777 456777788888764 8999999999999999999999964 99999999963 2334
Q ss_pred ccc-CccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCC---CCCceEEEEEecCCHHH
Q 003593 523 LNL-NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGS---IYPDGLTTTLNLDDLDY 580 (808)
Q Consensus 523 IDi-pV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~---~~~~G~~i~l~~~d~~~ 580 (808)
..| .|++||+|++ |..+.-|...++-.+.... ....+.|+++|+.-+..
T Consensus 366 y~irGi~~viFY~~---------P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~ 418 (442)
T PF06862_consen 366 YRIRGIRHVIFYGP---------PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDAL 418 (442)
T ss_pred ceecCCcEEEEECC---------CCChhHHHHHHhhhcccccccccccCceEEEEecHhHHH
Confidence 456 4999999999 7776666655543333221 12257899999864443
No 159
>PF13245 AAA_19: Part of AAA domain
Probab=97.34 E-value=0.00061 Score=58.59 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=35.8
Q ss_pred CCeEEEEecCCCcHHHHH---HHHHHh-----cCcEEEEcccHHHHHHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNA---LQRFME-----AKKGIYCSPLRLLAMEVFDKV 338 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~---L~~L~~-----~~~~lvl~Ptr~La~Qi~~~l 338 (808)
+..+++.||.|||||... +..+.. +.+++|++|++..+.++.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 556677999999999663 333333 457899999999999999999
No 160
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.17 E-value=0.0016 Score=66.63 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCeEEEEecCCCcHHHH---HHHHHHh-cCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecc
Q 003593 294 RKIIYHCGPTNSGKTYN---ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (808)
Q Consensus 294 grdvlv~apTGSGKTl~---~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l 369 (808)
.+.+++.||.|+|||+. ....+.. +.++++++||...+..+.+... +.+.-+..-...... ......
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~---~~a~Ti~~~l~~~~~----~~~~~~-- 88 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTG---IEAQTIHSFLYRIPN----GDDEGR-- 88 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHT---S-EEEHHHHTTEECC----EECCSS--
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhC---cchhhHHHHHhcCCc----cccccc--
Confidence 35788889999999998 2223333 3578899999999998777742 222111110000000 000000
Q ss_pred cCCCceeEEEEccchhhhcccchhHHHHHHhhccc--cceeccCCch
Q 003593 370 STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA--DEIHLCGDPS 414 (808)
Q Consensus 370 ~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~--~~i~l~~s~~ 414 (808)
......+++|||||-++... .+..++..+.. .++.+++++.
T Consensus 89 ~~~~~~~vliVDEasmv~~~----~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSR----QLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHH----HHHHHHHHS-T-T-EEEEEE-TT
T ss_pred ccCCcccEEEEecccccCHH----HHHHHHHHHHhcCCEEEEECCcc
Confidence 00112579999999999842 45555555544 3556667664
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.08 E-value=0.0035 Score=76.51 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=81.0
Q ss_pred HHHHHHhh-cCCCCEEEEec-h-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccc
Q 003593 447 TLLGDLRN-VRSGDCVVAFS-R-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 447 ~ll~~l~~-~~~g~~II~fs-r-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GI 523 (808)
.++..+.. +..|..|++-| . ...+.+...|.+ .|++.-++++.....+-.-+.++= ..-.|-|||+.+|||-
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~-~gI~H~VLNAK~h~~EAeIVA~AG----~~GaVTIATNMAGRGT 690 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKM-RKIPHNVLNAKLHQKEAEIVAEAG----QPGTVTIATNMAGRGT 690 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHH-cCCcHHHhhccchhhHHHHHHhcC----CCCcEEEeccCcCCCc
Confidence 44544432 34565555553 3 455556666655 488888888875544444443332 3457999999999999
Q ss_pred ccC----cc-----EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHH
Q 003593 524 NLN----IR-----RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYL 581 (808)
Q Consensus 524 Dip----V~-----~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l 581 (808)
||- |. +||-... +.|.---.|-.|||||-|. +|.+-.|++=++..+
T Consensus 691 DIkLg~~V~e~GGL~VIgTer---------heSrRID~QLrGRaGRQGD---PGsS~f~lSLEDdLm 745 (1112)
T PRK12901 691 DIKLSPEVKAAGGLAIIGTER---------HESRRVDRQLRGRAGRQGD---PGSSQFYVSLEDNLM 745 (1112)
T ss_pred CcccchhhHHcCCCEEEEccC---------CCcHHHHHHHhcccccCCC---CCcceEEEEcccHHH
Confidence 983 33 6777666 8899999999999999998 899988887544444
No 162
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.02 E-value=0.00085 Score=74.96 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=54.1
Q ss_pred CeEEEEecCCCcHHHHHHHHHH------hcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEee-e
Q 003593 295 KIIYHCGPTNSGKTYNALQRFM------EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTV-E 367 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~L~~L~------~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~-e 367 (808)
+.++|.|..|||||+.++..+. .+..++++++...|+..+...+...... .......... . ...... .
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-~~~~~~~~~~---~-~~i~~~~~ 76 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-KLKKSDFRKP---T-SFINNYSE 76 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc-chhhhhhhhh---H-HHHhhccc
Confidence 4688999999999999543332 3467899999999999999888764300 0000000000 0 000000 0
Q ss_pred cccCCCceeEEEEccchhhhc
Q 003593 368 MVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 368 ~l~~~~lv~~vVIDEAh~i~d 388 (808)
.-.....+++|||||||++.+
T Consensus 77 ~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 77 SDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ccccCCcCCEEEEehhHhhhh
Confidence 111222389999999999987
No 163
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.00 E-value=0.0018 Score=70.32 Aligned_cols=52 Identities=25% Similarity=0.197 Sum_probs=41.9
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHHH----h-cC-----cEEEEcccHHHHHHHHHHHHHcc
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRFM----E-AK-----KGIYCSPLRLLAMEVFDKVNALG 342 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L~----~-~~-----~~lvl~Ptr~La~Qi~~~l~~~g 342 (808)
+..|+.+++.||||+|||+++|.+.+ . +. +++|+++|..+..|....+++..
T Consensus 24 ~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00489 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred HHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 36788999999999999999665543 2 23 68899999999999988887753
No 164
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.00 E-value=0.0018 Score=70.32 Aligned_cols=52 Identities=25% Similarity=0.197 Sum_probs=41.9
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHHH----h-cC-----cEEEEcccHHHHHHHHHHHHHcc
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRFM----E-AK-----KGIYCSPLRLLAMEVFDKVNALG 342 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L~----~-~~-----~~lvl~Ptr~La~Qi~~~l~~~g 342 (808)
+..|+.+++.||||+|||+++|.+.+ . +. +++|+++|..+..|....+++..
T Consensus 24 ~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~~ 85 (289)
T smart00488 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKLM 85 (289)
T ss_pred HHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhcc
Confidence 36788999999999999999665543 2 23 68899999999999988887753
No 165
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.88 E-value=0.0021 Score=65.86 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=48.6
Q ss_pred HHhCCCeEEEEecCCCcHHHHHH----HHHHhcC--cEEEEcccHHHHHHHHHHHHHccccccccccccccc--------
Q 003593 290 RVMKRKIIYHCGPTNSGKTYNAL----QRFMEAK--KGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL-------- 355 (808)
Q Consensus 290 ~~l~grdvlv~apTGSGKTl~~L----~~L~~~~--~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~-------- 355 (808)
.++..+.+++.||.|||||+.++ ..+..+. +.+|+-|+.+. |...+.+.|+....
T Consensus 15 al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-----------~~~lGflpG~~~eK~~p~~~p~ 83 (205)
T PF02562_consen 15 ALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-----------GEDLGFLPGDLEEKMEPYLRPI 83 (205)
T ss_dssp HHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-----------T----SS---------TTTHHH
T ss_pred HHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-----------ccccccCCCCHHHHHHHHHHHH
Confidence 34678899999999999999843 3333432 44555588754 22233333322111
Q ss_pred ---------------cc-cCCeEEEeeecccCCCc--eeEEEEccchhhhcccchhHHHHHHhhccc-cceeccCCchHH
Q 003593 356 ---------------VP-FSNHIACTVEMVSTDEM--YDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDPSVL 416 (808)
Q Consensus 356 ---------------~~-~~~~i~~t~e~l~~~~l--v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~-~~i~l~~s~~~~ 416 (808)
.. ...+-+..+.++. ++- -.+|||||||.+.- +.+..++..+.. .++.+++++.-.
T Consensus 84 ~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iR-Grt~~~~~iIvDEaQN~t~----~~~k~ilTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 84 YDALEELFGKEKLEELIQNGKIEIEPLAFIR-GRTFDNAFIIVDEAQNLTP----EELKMILTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp HHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT-T--B-SEEEEE-SGGG--H----HHHHHHHTTB-TT-EEEEEE-----
T ss_pred HHHHHHHhChHhHHHHhhcCeEEEEehhhhc-CccccceEEEEecccCCCH----HHHHHHHcccCCCcEEEEecCceee
Confidence 00 1112222233332 222 38999999999983 466677766654 456677776544
Q ss_pred H
Q 003593 417 D 417 (808)
Q Consensus 417 ~ 417 (808)
+
T Consensus 159 D 159 (205)
T PF02562_consen 159 D 159 (205)
T ss_dssp -
T ss_pred c
Confidence 3
No 166
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.71 E-value=0.0042 Score=71.67 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=50.6
Q ss_pred hhhhHHHhCCCeEEEEecCCCcHHHH---HHHHHH--hcCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 285 WFPFARVMKRKIIYHCGPTNSGKTYN---ALQRFM--EAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 285 ~~~i~~~l~grdvlv~apTGSGKTl~---~L~~L~--~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
..++..+|++...|+.||+|+|||.. ++..|. .++.+|||+|....+.|+++.+.+.|+++
T Consensus 416 ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKV 481 (935)
T KOG1802|consen 416 SNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKV 481 (935)
T ss_pred HHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceE
Confidence 35777889999999999999999987 333333 46789999999999999999999987653
No 167
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.69 E-value=0.0021 Score=68.59 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=68.2
Q ss_pred HCCCC-CCcchhhhHHHhCCCeEEEEecCCCcHHHH-HHHHHH---hcCcEEEEcccHHHHHHHHHHHHH----cccccc
Q 003593 276 SADLT-KPHTWFPFARVMKRKIIYHCGPTNSGKTYN-ALQRFM---EAKKGIYCSPLRLLAMEVFDKVNA----LGVYCS 346 (808)
Q Consensus 276 ~~g~~-~pt~~~~i~~~l~grdvlv~apTGSGKTl~-~L~~L~---~~~~~lvl~Ptr~La~Qi~~~l~~----~g~~~~ 346 (808)
..|+. .++|++.......|+ |+.+.||=|||++ ++++.. .+..+=|++..--||..=++.+.. +|+.++
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 34443 344445555556666 8899999999999 444433 455667888999999887777655 488888
Q ss_pred cccccccccc----ccCCeEEEeeec-----c----c------CCCceeEEEEccchhhh
Q 003593 347 LLTGQEKKLV----PFSNHIACTVEM-----V----S------TDEMYDVAVIDEIQMMS 387 (808)
Q Consensus 347 l~~g~~~~~~----~~~~~i~~t~e~-----l----~------~~~lv~~vVIDEAh~i~ 387 (808)
++++...... -...++++|..- | . ..+.+.++||||||.++
T Consensus 151 ~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 151 IITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7776554321 134567777421 1 0 01237899999999886
No 168
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.66 E-value=0.0042 Score=61.76 Aligned_cols=115 Identities=21% Similarity=0.256 Sum_probs=71.9
Q ss_pred HhhcCCCCEEEEec-hhHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECC--CCcccccc
Q 003593 452 LRNVRSGDCVVAFS-RREIFEVKMAIEKHT---NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASD--AVGMGLNL 525 (808)
Q Consensus 452 l~~~~~g~~II~fs-rk~~~~l~~~L~~~~---g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATd--a~~~GIDi 525 (808)
+.+..+|.++|+|+ ....+.+...+.... ++. ++.- ....+...++.|.. +.-.||+|+. .+..|||+
T Consensus 4 l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~--v~~q--~~~~~~~~l~~~~~--~~~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 4 LISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIP--VFVQ--GSKSRDELLEEFKR--GEGAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSC--EEES--TCCHHHHHHHHHCC--SSSEEEEEETTSCCGSSS--
T ss_pred HHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccce--eeec--CcchHHHHHHHHHh--ccCeEEEEEecccEEEeecC
Confidence 33455688888885 566666666665431 222 2222 35578889999965 8888999999 99999999
Q ss_pred C---ccEEEEeCCccCCCC---------------------ccccCCHhHHHHHhCccCCCCCCCCceEEEEEe
Q 003593 526 N---IRRVVFYSLSKYNGD---------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 526 p---V~~VI~~~~~K~dg~---------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~ 574 (808)
| ++.||..++|.-... -+.|.-+-...|-+||+=|...+ .|.++.+.
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~llD 148 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDD--YGVIILLD 148 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT---EEEEEEES
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCC--cEEEEEEc
Confidence 5 999999998642111 12334445667999999998873 57776664
No 169
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.54 E-value=0.0054 Score=74.60 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=38.3
Q ss_pred hhHHHhCC------CeEEEEecCCCcHHHHHHHHHH-----hcCcEEEEcccHHHHHHHHH
Q 003593 287 PFARVMKR------KIIYHCGPTNSGKTYNALQRFM-----EAKKGIYCSPLRLLAMEVFD 336 (808)
Q Consensus 287 ~i~~~l~g------rdvlv~apTGSGKTl~~L~~L~-----~~~~~lvl~Ptr~La~Qi~~ 336 (808)
.+...+.+ +.+++-||||+|||++||.|.+ .+.++||-+.|+.|-.|+..
T Consensus 36 ~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 36 EVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred HHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 44555554 7789999999999999776654 34566666799999999964
No 170
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.51 E-value=0.015 Score=68.99 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=69.1
Q ss_pred hhHHHhCCCeEEEEecCCCcHHHH---HHHHHHh---c---CcEEEEcccHHHHHHHHHHHHHccccccccccccccccc
Q 003593 287 PFARVMKRKIIYHCGPTNSGKTYN---ALQRFME---A---KKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357 (808)
Q Consensus 287 ~i~~~l~grdvlv~apTGSGKTl~---~L~~L~~---~---~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~ 357 (808)
++..++.++.+++.|+.|+|||+. .+..+.. . .++++++||---|..+.+.+.........- .......+
T Consensus 153 A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-~~~~~~~~ 231 (586)
T TIGR01447 153 AVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-EALIAALP 231 (586)
T ss_pred HHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-hhhhhccc
Confidence 666778999999999999999998 2333322 1 357788899999988888775532111100 00000000
Q ss_pred -----cCCeEEEee---ecc---cCCCceeEEEEccchhhhcccchhHHHHHHhhccc-cceeccCCc
Q 003593 358 -----FSNHIACTV---EMV---STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA-DEIHLCGDP 413 (808)
Q Consensus 358 -----~~~~i~~t~---e~l---~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~-~~i~l~~s~ 413 (808)
....+...+ ... .....+++||||||=|+.- ..+..++..++. .++.+++++
T Consensus 232 ~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~----~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 232 SEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL----PLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred cccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH----HHHHHHHHhcCCCCEEEEECCh
Confidence 000000000 000 0111279999999999973 345566666654 345556654
No 171
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.50 E-value=0.01 Score=70.68 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=68.8
Q ss_pred hhhHHHhCCCeEEEEecCCCcHHHH---HHHHHHh-c----CcEEEEcccHHHHHHHHHHHHHccccccccccccccccc
Q 003593 286 FPFARVMKRKIIYHCGPTNSGKTYN---ALQRFME-A----KKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVP 357 (808)
Q Consensus 286 ~~i~~~l~grdvlv~apTGSGKTl~---~L~~L~~-~----~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~ 357 (808)
.++...+.++.+++.|++|+|||+. .+..+.. . ..+++++||.--|..+.+.+........+. .......+
T Consensus 159 ~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-~~~~~~~~ 237 (615)
T PRK10875 159 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-DEQKKRIP 237 (615)
T ss_pred HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc-hhhhhcCC
Confidence 3666778899999999999999988 3333332 1 245667899999999988876432111110 00000000
Q ss_pred c-----CCeEEEeee--cc----cCCCceeEEEEccchhhhcccchhHHHHHHhhcccc-ceeccCCc
Q 003593 358 F-----SNHIACTVE--MV----STDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDP 413 (808)
Q Consensus 358 ~-----~~~i~~t~e--~l----~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~-~i~l~~s~ 413 (808)
. ...+...+. .. .....++++|||||-|+.- ..+..++..+++. ++.+++++
T Consensus 238 ~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~----~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 238 EEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL----PMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH----HHHHHHHHhcccCCEEEEecch
Confidence 0 000000000 00 0111169999999999963 3445566666653 45555544
No 172
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.46 E-value=0.0037 Score=78.36 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=37.8
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH-----hcCcEEEEcccHHHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM-----EAKKGIYCSPLRLLAMEVFDK 337 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~-----~~~~~lvl~Ptr~La~Qi~~~ 337 (808)
..++.+++.||||+|||++||.+.+ .+.++||.++|+.|..|+..+
T Consensus 274 ~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 274 RDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred hcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 4678899999999999999876654 345777778999999998763
No 173
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.36 E-value=0.084 Score=63.86 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=69.8
Q ss_pred hcCCCCEEEEech--hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC----c
Q 003593 454 NVRSGDCVVAFSR--REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN----I 527 (808)
Q Consensus 454 ~~~~g~~II~fsr--k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip----V 527 (808)
.+..|..|++-|. ...+.+...|.+. |++-.++.+.-. +|+..+-.+. ...-.|=|||+.+|||-||- +
T Consensus 425 ~~~~gqPvLvgT~sie~SE~ls~~L~~~-~i~h~VLNAk~h--~~EA~Iia~A--G~~gaVTiATNMAGRGTDIkLg~~~ 499 (822)
T COG0653 425 RHEKGQPVLVGTVSIEKSELLSKLLRKA-GIPHNVLNAKNH--AREAEIIAQA--GQPGAVTIATNMAGRGTDIKLGGNP 499 (822)
T ss_pred HHhcCCCEEEcCcceecchhHHHHHHhc-CCCceeeccccH--HHHHHHHhhc--CCCCccccccccccCCcccccCCCH
Confidence 3456666776653 4566666666654 887777777765 3433333432 13346889999999999982 2
Q ss_pred c--------EEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCCHHHHHH
Q 003593 528 R--------RVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 528 ~--------~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d~~~l~~ 583 (808)
. +||-... -.|-.-=-|.-||+||.|. +|..-.|++-++..++.
T Consensus 500 ~~V~~lGGL~VIgTER---------hESRRIDnQLRGRsGRQGD---pG~S~F~lSleD~L~r~ 551 (822)
T COG0653 500 EFVMELGGLHVIGTER---------HESRRIDNQLRGRAGRQGD---PGSSRFYLSLEDDLMRR 551 (822)
T ss_pred HHHHHhCCcEEEeccc---------chhhHHHHHhhcccccCCC---cchhhhhhhhHHHHHHH
Confidence 2 3343322 2232233489999999997 78887777654444333
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.31 E-value=0.0062 Score=62.81 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=42.1
Q ss_pred hhhhHHHhCCCe-EEEEecCCCcHHHH---HHHHH---------HhcCcEEEEcccHHHHHHHHHHHHH
Q 003593 285 WFPFARVMKRKI-IYHCGPTNSGKTYN---ALQRF---------MEAKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 285 ~~~i~~~l~grd-vlv~apTGSGKTl~---~L~~L---------~~~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
..++..++.... .++.||.|+|||.. ++..+ ..++..|+++|+...+.++.+++.+
T Consensus 7 ~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 7 REAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 345555677887 99999999999976 33333 2345789999999999999999988
No 175
>PRK10536 hypothetical protein; Provisional
Probab=96.31 E-value=0.011 Score=62.59 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=61.5
Q ss_pred HHhCCCeEEEEecCCCcHHHHHHH----HHHhcC-cEEEEc-ccHHHHHH-------HHHHHHHcccc----ccccccc-
Q 003593 290 RVMKRKIIYHCGPTNSGKTYNALQ----RFMEAK-KGIYCS-PLRLLAME-------VFDKVNALGVY----CSLLTGQ- 351 (808)
Q Consensus 290 ~~l~grdvlv~apTGSGKTl~~L~----~L~~~~-~~lvl~-Ptr~La~Q-------i~~~l~~~g~~----~~l~~g~- 351 (808)
.+.++..+++.||+|+|||+.++. .+..+. ..+||+ |+...... +.+.+..+-.+ ...+.|.
T Consensus 70 al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~ 149 (262)
T PRK10536 70 AIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGAS 149 (262)
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChH
Confidence 346778999999999999998433 333332 335554 77654322 12222222111 0111111
Q ss_pred ccccc---ccCCeEEEeeecccCCCc-eeEEEEccchhhhcccchhHHHHHHhhcccc-ceeccCCchHHH
Q 003593 352 EKKLV---PFSNHIACTVEMVSTDEM-YDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDPSVLD 417 (808)
Q Consensus 352 ~~~~~---~~~~~i~~t~e~l~~~~l-v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~-~i~l~~s~~~~~ 417 (808)
..... ....+-+..+.++.-..+ -++|||||||.+.- .....++..+... .+.+++++.-.+
T Consensus 150 ~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~----~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 150 FMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA----AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred HHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH----HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 11100 011122222233322221 47999999999984 3455555555443 455667765433
No 176
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.29 E-value=0.019 Score=70.11 Aligned_cols=116 Identities=19% Similarity=0.160 Sum_probs=64.2
Q ss_pred hhhHHHhCCCeEEEEecCCCcHHHH--H-HHHHHhcC---cEEEEcccHHHHHHHHHHHHHccccccccccccccccccC
Q 003593 286 FPFARVMKRKIIYHCGPTNSGKTYN--A-LQRFMEAK---KGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFS 359 (808)
Q Consensus 286 ~~i~~~l~grdvlv~apTGSGKTl~--~-L~~L~~~~---~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~ 359 (808)
.++..+..++.+++.|+.|+|||+. . +..+...+ .+++++||--.|..+.+.. |..+.-++.-.... . .
T Consensus 330 ~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~---g~~a~Tih~lL~~~-~-~ 404 (720)
T TIGR01448 330 QALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT---GLTASTIHRLLGYG-P-D 404 (720)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc---CCccccHHHHhhcc-C-C
Confidence 3555667888999999999999987 3 33333333 4566789998887665443 22221111000000 0 0
Q ss_pred CeEEEeeecccCCCceeEEEEccchhhhcccchhHHHHHHhhcccc-ceeccCCc
Q 003593 360 NHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDP 413 (808)
Q Consensus 360 ~~i~~t~e~l~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~-~i~l~~s~ 413 (808)
.. . ..........++||||||+|+... .+...+..++.. ++.+++++
T Consensus 405 ~~--~-~~~~~~~~~~~llIvDEaSMvd~~----~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 405 TF--R-HNHLEDPIDCDLLIVDESSMMDTW----LALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred cc--c-hhhhhccccCCEEEEeccccCCHH----HHHHHHHhCCCCCEEEEECcc
Confidence 00 0 000111122689999999999742 445555555543 45555554
No 177
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.28 E-value=0.02 Score=71.31 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=83.1
Q ss_pred EEEEec-hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccccc-CccEEEEeCCcc
Q 003593 460 CVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVVFYSLSK 537 (808)
Q Consensus 460 ~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDi-pV~~VI~~~~~K 537 (808)
.+++|+ -.....+.....+..++....++|+++.+.|...++.|++..+..-.+++|-+.|.|||+ ..++||++|.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~-- 790 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP-- 790 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc--
Confidence 455554 355555555444444678999999999999999999998633466777788899999999 5999999998
Q ss_pred CCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 538 YNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 538 ~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
+.++....|...||-|.|. ...=.++.+...+
T Consensus 791 -------~wnp~~~~Qa~dRa~RigQ-~~~v~v~r~i~~~ 822 (866)
T COG0553 791 -------WWNPAVELQAIDRAHRIGQ-KRPVKVYRLITRG 822 (866)
T ss_pred -------ccChHHHHHHHHHHHHhcC-cceeEEEEeecCC
Confidence 7899999999999999887 2234555666544
No 178
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.24 E-value=0.025 Score=71.16 Aligned_cols=118 Identities=15% Similarity=0.200 Sum_probs=82.3
Q ss_pred hcCCCCEEEEec-hhHHHHHHHHHHHhcCC-eEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC---cc
Q 003593 454 NVRSGDCVVAFS-RREIFEVKMAIEKHTNH-HCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IR 528 (808)
Q Consensus 454 ~~~~g~~II~fs-rk~~~~l~~~L~~~~g~-~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip---V~ 528 (808)
...+|.++|+|+ .+....++..|...... ....+.-+++...|.++++.|+. ++-.||++|..+..|||+| ++
T Consensus 749 ~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~--~~~~iLlG~~sFwEGVD~pg~~l~ 826 (928)
T PRK08074 749 KATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ--FDKAILLGTSSFWEGIDIPGDELS 826 (928)
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh--cCCeEEEecCcccCccccCCCceE
Confidence 345678888885 57777788887653221 12223224444567889999975 7778999999999999995 79
Q ss_pred EEEEeCCccCCCC---------------------ccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 529 RVVFYSLSKYNGD---------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 529 ~VI~~~~~K~dg~---------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
.||...+|--... ...|..+-.+.|-+||.=|...+ .|.++.+..
T Consensus 827 ~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D--~G~v~ilD~ 892 (928)
T PRK08074 827 CLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETD--RGTVFVLDR 892 (928)
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCc--eEEEEEecC
Confidence 9999987632111 12345566779999999998873 787777654
No 179
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.20 E-value=0.0058 Score=63.67 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=53.5
Q ss_pred EEEEecCCCcHHHHHHHHHHhcCcEEEEc---ccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecccCC-
Q 003593 297 IYHCGPTNSGKTYNALQRFMEAKKGIYCS---PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTD- 372 (808)
Q Consensus 297 vlv~apTGSGKTl~~L~~L~~~~~~lvl~---Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l~~~- 372 (808)
+++.|+.|||||..+...+... ++++ |+.+++.+.. ..........+.+..+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~s~~~~~~~~ 60 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR---LVVTVISPTIELYTEWL-----------------PDPPSKSVRTVDSFLKALVKP 60 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc---cccccccccceeccccc-----------------cccCCccccEEeEhhhccccc
Confidence 4789999999999865555444 3333 5444444433 00011111222233332222
Q ss_pred CceeEEEEccchhhhcccchhHHHHHHhhccccceeccCCchH
Q 003593 373 EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSV 415 (808)
Q Consensus 373 ~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~ 415 (808)
...+++||||++++. +|...- ++...+...+.++|+|.-
T Consensus 61 ~~~~~liiDE~~~~~---~g~l~~-l~~~~~~~~~~l~GDp~Q 99 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLP---PGYLLL-LLSLSPAKNVILFGDPLQ 99 (234)
T ss_pred CcCCEEEEeccccCC---hHHHHH-HHhhccCcceEEEECchh
Confidence 237899999999987 444444 444455567777777753
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.08 E-value=0.0034 Score=59.03 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=12.6
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
+++.+++.||+|+|||..
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 467899999999999998
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.05 E-value=0.0028 Score=59.02 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=25.9
Q ss_pred CCeEEEEecCCCcHHHHH--HHHHHhcC--cEEEEcccHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNA--LQRFMEAK--KGIYCSPLRLLA 331 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~--L~~L~~~~--~~lvl~Ptr~La 331 (808)
+..++++||+|+|||+.+ +....... .++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 578999999999999983 33333333 477777654433
No 182
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.03 E-value=0.067 Score=65.49 Aligned_cols=111 Identities=20% Similarity=0.272 Sum_probs=79.3
Q ss_pred CCCEEEEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCcccccc-CccEEEEeC
Q 003593 457 SGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNL-NIRRVVFYS 534 (808)
Q Consensus 457 ~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDi-pV~~VI~~~ 534 (808)
.|..+++||. ....++...++...|+-..-+.|..+-++|....++|+....-.-.|.+|-..|.|||+ ..+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 4556777764 55666666666777999999999999999999999998622234457789999999999 599999999
Q ss_pred CccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecCC
Q 003593 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~d 577 (808)
.-+ |.. .-.-..+..||||++ . .=..|.|+++.
T Consensus 1355 sDw-NPt--MDaQAQDrChRIGqt---R----DVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1355 SDW-NPT--MDAQAQDRCHRIGQT---R----DVHIYRLISER 1387 (1958)
T ss_pred CCC-Cch--hhhHHHHHHHhhcCc---c----ceEEEEeeccc
Confidence 622 100 011234556666665 2 46788888754
No 183
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.13 Score=58.61 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCC--cccccc-CccEEEEeC
Q 003593 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAV--GMGLNL-NIRRVVFYS 534 (808)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~--~~GIDi-pV~~VI~~~ 534 (808)
.++|+. +--+-..+..++.+. +..-..+|---+...=.++-+.|- .|...||+-|.-+ =+--+| .|+.||+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e-~i~F~~i~EYssk~~vsRAR~lF~--qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKE-EISFVMINEYSSKSKVSRARELFF--QGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhh-hcchHHHhhhhhHhhhhHHHHHHH--hcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 355544 566777777777765 555555554444444445667784 4999999999743 456778 499999999
Q ss_pred CccCCCCccccCCHhHHHHHhCccCCCCCC-CCceEEEEEecCC
Q 003593 535 LSKYNGDKIIPVPGSQVKQIAGRAGRRGSI-YPDGLTTTLNLDD 577 (808)
Q Consensus 535 ~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~-~~~G~~i~l~~~d 577 (808)
+|.+ |.=..+++.+.||+.--|.. -..-.|.++|+.-
T Consensus 631 pP~~------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 631 PPNN------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred CCCC------cHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 9433 44456667788777554421 1145777788753
No 184
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.90 E-value=0.014 Score=67.37 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=42.9
Q ss_pred hhhHHHhCC-CeEEEEecCCCcHHHH----HHHHHHhcCcEEEEcccHHHHHHHHHHHH
Q 003593 286 FPFARVMKR-KIIYHCGPTNSGKTYN----ALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 286 ~~i~~~l~g-rdvlv~apTGSGKTl~----~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
.++...+.. .-.++.||+|+|||.. ..+.+..+.++|||+||.+-+..+.+++.
T Consensus 192 ~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 192 AAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 344444555 4567889999999987 45566678899999999999999999865
No 185
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.80 E-value=0.069 Score=64.78 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=83.0
Q ss_pred hhcCCCCEEEEech-hHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC---cc
Q 003593 453 RNVRSGDCVVAFSR-REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IR 528 (808)
Q Consensus 453 ~~~~~g~~II~fsr-k~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip---V~ 528 (808)
....++.++|+|+. .....++..+...........+|..+.. ..++.|.+ .++..++|+|..+..|||+| .+
T Consensus 475 ~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~-~~~~~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 475 LKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKA-SGEGLILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred HhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHH-hcCCeEEEeeccccCcccCCCCCee
Confidence 44566788998864 6666777777653111345566665544 67888874 33338999999999999994 89
Q ss_pred EEEEeCCccC-------------------CCC--ccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 529 RVVFYSLSKY-------------------NGD--KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 529 ~VI~~~~~K~-------------------dg~--~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
.||..++|-- ++. .+.|..+-.+.|-+||+=|.-.+ .|.++++..
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D--~G~ivllD~ 616 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD--RGVIVLLDK 616 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC--ceEEEEecc
Confidence 9999998632 111 34566778889999999996653 688888764
No 186
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.62 E-value=0.014 Score=70.73 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=39.7
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHh-----cCcEEEEcccHHHHHHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFME-----AKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~-----~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
..++.+++.||||+|||+++|.+.+. +..++|.++|+.|..|+.++...
T Consensus 32 ~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 32 KGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred cCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 45556999999999999997665543 25788889999999999887654
No 187
>PRK06526 transposase; Provisional
Probab=95.34 E-value=0.018 Score=61.30 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=28.6
Q ss_pred hCCCeEEEEecCCCcHHHHH---HHHHHhcCcEEEEcccHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNA---LQRFMEAKKGIYCSPLRLLAMEVF 335 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~---L~~L~~~~~~lvl~Ptr~La~Qi~ 335 (808)
-.+++++++||+|+|||..+ ...+...|..++......|+.++.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 35789999999999999872 233444454444444555655553
No 188
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.28 E-value=0.034 Score=55.70 Aligned_cols=48 Identities=27% Similarity=0.368 Sum_probs=34.6
Q ss_pred EEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 297 IYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 297 vlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
+++.||+|+|||..+++.+ ..+..++|++ +-+...++.+++..+|...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s-~e~~~~~~~~~~~~~g~~~ 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT-LEESPEELIENAESLGWDL 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCHHHHHHHHHHcCCCh
Confidence 6899999999999744332 3445677775 4566788888888877654
No 189
>PRK08181 transposase; Validated
Probab=95.26 E-value=0.028 Score=60.28 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=31.4
Q ss_pred hCCCeEEEEecCCCcHHHH--H-HHHHHhcCcEEEEcccHHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN--A-LQRFMEAKKGIYCSPLRLLAMEVFD 336 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~-L~~L~~~~~~lvl~Ptr~La~Qi~~ 336 (808)
-.+++++++||+|+|||.. + ...+...+..++..+..+|+.++..
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH
Confidence 4678999999999999976 2 2334455555555666777777654
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.26 E-value=0.034 Score=66.91 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=44.2
Q ss_pred hhHHHhCC-CeEEEEecCCCcHHHHH---H-HHHHhcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 287 PFARVMKR-KIIYHCGPTNSGKTYNA---L-QRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 287 ~i~~~l~g-rdvlv~apTGSGKTl~~---L-~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
++..++.. ..+++.||+|+|||... + +.+..+.++++++||...+.++.+++...+..
T Consensus 165 Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~ 227 (637)
T TIGR00376 165 AVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQK 227 (637)
T ss_pred HHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCc
Confidence 34445555 68889999999999872 2 23335668999999999999999999876443
No 191
>PRK04296 thymidine kinase; Provisional
Probab=95.18 E-value=0.008 Score=61.13 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcc
Q 003593 294 RKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSP 326 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~P 326 (808)
|..+++.||+|+|||+.++..+. .+.+++|+-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 56789999999999988554443 2446676756
No 192
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.18 E-value=0.035 Score=52.05 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.2
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.++.+++.||+|+|||..
T Consensus 18 ~~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999987
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.007 Score=64.78 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=22.8
Q ss_pred hCCCeEEEEecCCCcHHHH--HHHHHHhcCcE
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEAKKG 321 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~~L~~~~~~ 321 (808)
++.-+++++||||||||+. -|..++.-+-+
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 6777999999999999987 45555554433
No 194
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.17 E-value=0.17 Score=61.80 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=78.4
Q ss_pred CCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCCeeEEEECCCCccccccC---ccE
Q 003593 456 RSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFND--QDNEFDVLVASDAVGMGLNLN---IRR 529 (808)
Q Consensus 456 ~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~--~~g~~~ILVATda~~~GIDip---V~~ 529 (808)
.+|.++|+| |.+....++..|....+.. +..+|.. .|..+++.|++ ..++..||++|..+..|||+| +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 455578877 5677777888776543444 4446643 46778877753 125678999999999999995 899
Q ss_pred EEEeCCccCCCC---------------------ccccCCHhHHHHHhCccCCCCCCCCceEEEEEec
Q 003593 530 VVFYSLSKYNGD---------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 530 VI~~~~~K~dg~---------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~ 575 (808)
||...+|--... ...|.-+-.+.|-+||.=|...+ .|.++.+..
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D--~G~i~ilD~ 673 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQD--RGRVTILDR 673 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCc--eEEEEEEcc
Confidence 999997632111 11244455678999999998763 687777654
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.16 E-value=0.05 Score=57.54 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=47.4
Q ss_pred CeEEEEecCCCcHHHH---HHHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecccC
Q 003593 295 KIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVST 371 (808)
Q Consensus 295 rdvlv~apTGSGKTl~---~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l~~ 371 (808)
..+++.|++|+|||+. +...+...+..+++.+...|+..+...+... ..... .++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~--------~~~~~------------~~l~~ 159 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS--------ETSEE------------QLLND 159 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhc--------cccHH------------HHHHH
Confidence 4789999999999977 3344555555555556666666555444210 00000 01111
Q ss_pred CCceeEEEEccchhhhcccchhH
Q 003593 372 DEMYDVAVIDEIQMMSDACRGYA 394 (808)
Q Consensus 372 ~~lv~~vVIDEAh~i~d~~~g~~ 394 (808)
-..++++||||+++.....|+..
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~ 182 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKV 182 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHH
Confidence 11279999999999875545543
No 196
>PRK12377 putative replication protein; Provisional
Probab=95.15 E-value=0.048 Score=57.79 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=48.3
Q ss_pred CCeEEEEecCCCcHHHH---HHHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeeccc
Q 003593 294 RKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370 (808)
Q Consensus 294 grdvlv~apTGSGKTl~---~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l~ 370 (808)
...+++.||+|+|||+. +...+...+..+++.+..+|+.++...+.. +.... +.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~---------~~~~~------------~~l~ 159 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN---------GQSGE------------KFLQ 159 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc---------cchHH------------HHHH
Confidence 46899999999999977 344555666666667777888877665432 10000 1111
Q ss_pred CCCceeEEEEccchhhhcccc
Q 003593 371 TDEMYDVAVIDEIQMMSDACR 391 (808)
Q Consensus 371 ~~~lv~~vVIDEAh~i~d~~~ 391 (808)
.-..+++|||||++......|
T Consensus 160 ~l~~~dLLiIDDlg~~~~s~~ 180 (248)
T PRK12377 160 ELCKVDLLVLDEIGIQRETKN 180 (248)
T ss_pred HhcCCCEEEEcCCCCCCCCHH
Confidence 112379999999976643334
No 197
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.034 Score=59.19 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=55.7
Q ss_pred CCCeEEEEecCCCcHHHH---HHHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecc
Q 003593 293 KRKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~---~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l 369 (808)
+++++++.||+|+|||+. +...+...|.-++++++-+|+.++...+.. | ..... +.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~-~--------~~~~~------------l~ 162 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE-G--------RLEEK------------LL 162 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc-C--------chHHH------------HH
Confidence 789999999999999987 334555777888889999999999888765 1 10000 00
Q ss_pred cCCCceeEEEEccchhhhcccch
Q 003593 370 STDEMYDVAVIDEIQMMSDACRG 392 (808)
Q Consensus 370 ~~~~lv~~vVIDEAh~i~d~~~g 392 (808)
..-..++++||||.=......|+
T Consensus 163 ~~l~~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 163 RELKKVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred HHhhcCCEEEEecccCccCCHHH
Confidence 10122799999998876544444
No 198
>PF13173 AAA_14: AAA domain
Probab=95.09 E-value=0.095 Score=49.50 Aligned_cols=91 Identities=25% Similarity=0.198 Sum_probs=51.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH---HhcCcEEEEcccHHHHHH-----HHHHHHHccccccccccccccccccCCeEEE
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF---MEAKKGIYCSPLRLLAME-----VFDKVNALGVYCSLLTGQEKKLVPFSNHIAC 364 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L---~~~~~~lvl~Ptr~La~Q-----i~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~ 364 (808)
.++.+++.||.|+|||+.+.+.+ ......+++.=-.....+ ..+.+.+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~----------------------- 57 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL----------------------- 57 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh-----------------------
Confidence 36789999999999999854443 223455665411111111 11111110
Q ss_pred eeecccCCCceeEEEEccchhhhcccchhHHHHHHhhccccceeccCCch
Q 003593 365 TVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPS 414 (808)
Q Consensus 365 t~e~l~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~ 414 (808)
..++ -.+++|||+|.+.+ |...+...+..-+.-.+.++++..
T Consensus 58 ----~~~~--~~~i~iDEiq~~~~--~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 58 ----IKPG--KKYIFIDEIQYLPD--WEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred ----hccC--CcEEEEehhhhhcc--HHHHHHHHHHhccCceEEEEccch
Confidence 0001 36899999999975 666666665544344556666654
No 199
>PRK08727 hypothetical protein; Validated
Probab=95.07 E-value=0.048 Score=57.27 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=36.9
Q ss_pred CeEEEEecCCCcHHHH--H-HHHHHhcC-cEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeeccc
Q 003593 295 KIIYHCGPTNSGKTYN--A-LQRFMEAK-KGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370 (808)
Q Consensus 295 rdvlv~apTGSGKTl~--~-L~~L~~~~-~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l~ 370 (808)
..+++.||+|+|||+. + ...+.+.+ +++|+ |..++.....+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~-~~~~~~~~~~~~~~~------------------------------ 90 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL-PLQAAAGRLRDALEA------------------------------ 90 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-eHHHhhhhHHHHHHH------------------------------
Confidence 4599999999999976 2 23334434 45554 443433322222111
Q ss_pred CCCceeEEEEccchhhhc
Q 003593 371 TDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 371 ~~~lv~~vVIDEAh~i~d 388 (808)
-..+++|||||+|.+..
T Consensus 91 -l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 91 -LEGRSLVALDGLESIAG 107 (233)
T ss_pred -HhcCCEEEEeCcccccC
Confidence 01157999999998873
No 200
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.06 E-value=0.039 Score=67.45 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=41.1
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHHH----h-c--CcEEEEcccHHHHHHHHHHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRFM----E-A--KKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L~----~-~--~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
+..|+.+++.||||+|||++.|-+.+ . + .+.+|++.|..=..|..+++++
T Consensus 26 l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 26 LDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred hccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 36788999999999999999443333 2 2 4789999999999999999988
No 201
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=95.04 E-value=0.093 Score=61.31 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=81.0
Q ss_pred CCEEEEec-hhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCC
Q 003593 458 GDCVVAFS-RREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (808)
Q Consensus 458 g~~II~fs-rk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~ 535 (808)
...++||- ++...-+-.+|.- .|+...-+.|.....+|..+..+|.. +...-.|++|-+.|-|||+- .+.||+||.
T Consensus 1045 HRvL~yfQMTkM~dl~EdYl~y-r~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1045 HRVLMYFQMTKMIDLIEDYLVY-RGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred ceEEehhHHHHHHHHHHHHHHh-hccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecC
Confidence 34566664 4555555555554 59999999999999999999999975 66777899999999999996 999999997
Q ss_pred ccCCCCccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 536 SKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 536 ~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
--++..=.|-.-||-|-|. ...-++|.|++.
T Consensus 1123 ---------DWNPT~D~QAMDRAHRLGQ-Trdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1123 ---------DWNPTADQQAMDRAHRLGQ-TRDVTVYRLITR 1153 (1185)
T ss_pred ---------CCCcchhhHHHHHHHhccC-ccceeeeeeccc
Confidence 3355556677778888776 223566666653
No 202
>PRK06921 hypothetical protein; Provisional
Probab=94.87 E-value=0.047 Score=58.56 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCcHHHH---HHHHHHhc-CcEEEEcccHHHHHHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN---ALQRFMEA-KKGIYCSPLRLLAMEVFDK 337 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~---~L~~L~~~-~~~lvl~Ptr~La~Qi~~~ 337 (808)
.+..+++.||||+|||+. +...+... +..++..+..+|..++...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~ 164 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD 164 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH
Confidence 467899999999999976 33445544 5544455566666665443
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=94.84 E-value=0.067 Score=57.92 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH----Hhc----CcEEEEcccHHHHHHHHHHHHHc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF----MEA----KKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L----~~~----~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
....++|.|..|||||.+.+..+ ... ...|++++|+..|.++.+++...
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHh
Confidence 57899999999999999955433 222 36899999999999999999874
No 204
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.63 E-value=0.059 Score=55.83 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.6
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
-.+..+++.||+|+|||+.
T Consensus 36 ~~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCCeEEEECCCCCCHHHH
Confidence 3467899999999999988
No 205
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.53 E-value=0.26 Score=47.69 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=60.7
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC---ccEEEEeCCccCCCC------------------c-
Q 003593 485 CVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN---IRRVVFYSLSKYNGD------------------K- 542 (808)
Q Consensus 485 ~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip---V~~VI~~~~~K~dg~------------------~- 542 (808)
.++.-+....+...+++.|++ .+...||+||.-+..|||+| .+.||..++|..+.. .
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~-~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~ 103 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVE-ACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPF 103 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHH-cCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCch
Confidence 344445556567889999975 33347999998899999995 799999997642111 0
Q ss_pred ---cccCCHhHHHHHhCccCCCCCCCCceEEEEE
Q 003593 543 ---IIPVPGSQVKQIAGRAGRRGSIYPDGLTTTL 573 (808)
Q Consensus 543 ---~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l 573 (808)
..|...-...|-+||+=|...+ .|.++.+
T Consensus 104 ~~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~l~ 135 (141)
T smart00492 104 DFVSLPDAMRTLAQCVGRLIRGAND--YGVVVIA 135 (141)
T ss_pred hHHHHHHHHHHHHHHhCccccCcCc--eEEEEEE
Confidence 1134456778999999998873 5766655
No 206
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.071 Score=60.15 Aligned_cols=85 Identities=19% Similarity=0.283 Sum_probs=50.0
Q ss_pred hCCCeEEEEecCCCcHHHHH--HHHH-H-----hcCcEEEEc--ccHHHHHHHHHHHHH-ccccccccccccccccccCC
Q 003593 292 MKRKIIYHCGPTNSGKTYNA--LQRF-M-----EAKKGIYCS--PLRLLAMEVFDKVNA-LGVYCSLLTGQEKKLVPFSN 360 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~--L~~L-~-----~~~~~lvl~--Ptr~La~Qi~~~l~~-~g~~~~l~~g~~~~~~~~~~ 360 (808)
..++.++++||||+|||+++ |.+. . .+.++.+++ +.|.-+.++...+.. +|+++.... .....
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~--~~~~l---- 245 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE--SFKDL---- 245 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC--cHHHH----
Confidence 34678999999999999882 2222 2 123444444 888888877766655 465542211 10000
Q ss_pred eEEEeeecccCCCceeEEEEccchhhh
Q 003593 361 HIACTVEMVSTDEMYDVAVIDEIQMMS 387 (808)
Q Consensus 361 ~i~~t~e~l~~~~lv~~vVIDEAh~i~ 387 (808)
...+.....+++|+||++.+..
T Consensus 246 -----~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 246 -----KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred -----HHHHHHhCCCCEEEEcCCCCCc
Confidence 0011111237999999998875
No 207
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.37 E-value=0.067 Score=61.87 Aligned_cols=55 Identities=33% Similarity=0.344 Sum_probs=46.9
Q ss_pred HHhCCCeEEEEecCCCcHHHHHHHHHH----------hcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 290 RVMKRKIIYHCGPTNSGKTYNALQRFM----------EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 290 ~~l~grdvlv~apTGSGKTl~~L~~L~----------~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
+--.++.++|.|..|||||+++|.++. .++.+||+.|.+.++.-+...|-.+|..
T Consensus 222 R~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 222 RFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred hccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 446788999999999999999888764 3456899999999999999999988754
No 208
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=94.28 E-value=0.1 Score=64.55 Aligned_cols=72 Identities=14% Similarity=-0.011 Sum_probs=49.5
Q ss_pred CeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCC-----CCC-CCce-EEEEEecCCHHH
Q 003593 509 EFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRR-----GSI-YPDG-LTTTLNLDDLDY 580 (808)
Q Consensus 509 ~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~-----G~~-~~~G-~~i~l~~~d~~~ 580 (808)
..+.|++-.++..|.|-| |=.++-..- ..|...-.|.+||.-|. |.. .... ..+.+.+.....
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~---------~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~d 571 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRS---------SGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKD 571 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEecc---------CCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHH
Confidence 789999999999999998 655555554 45778889999999984 321 1112 233344666776
Q ss_pred HHHHhcCCc
Q 003593 581 LIECLKQPF 589 (808)
Q Consensus 581 l~~~l~~~~ 589 (808)
+.+.|.+.+
T Consensus 572 Fa~~LQ~EI 580 (986)
T PRK15483 572 FASKLVGEI 580 (986)
T ss_pred HHHHHHHHH
Confidence 666665543
No 209
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.23 E-value=0.15 Score=53.67 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
+..+++.||+|+|||+.
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45889999999999976
No 210
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.19 E-value=0.34 Score=57.93 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=82.8
Q ss_pred hcCCCCEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCCeeEEEECCCCcccccc-----
Q 003593 454 NVRSGDCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQ--DNEFDVLVASDAVGMGLNL----- 525 (808)
Q Consensus 454 ~~~~g~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~--~g~~~ILVATda~~~GIDi----- 525 (808)
....|.++|.| |.+....++..|.....+ .+.+.|..+ .|...+++|++. .+...||++|+.|..|||+
T Consensus 467 ~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~-~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~ 543 (636)
T TIGR03117 467 RKAQGGTLVLTTAFSHISAIGQLVELGIPA-EIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPV 543 (636)
T ss_pred HHcCCCEEEEechHHHHHHHHHHHHhhcCC-CEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccC
Confidence 44566777777 567888888888765443 345556554 345678888741 1578999999999999999
Q ss_pred ---C---ccEEEEeCCccC-C------------CC---ccccCCHhHHHHHhCccCCCCCCCCceEEEEEecC
Q 003593 526 ---N---IRRVVFYSLSKY-N------------GD---KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLD 576 (808)
Q Consensus 526 ---p---V~~VI~~~~~K~-d------------g~---~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~~~ 576 (808)
| +..||..-+|-- + |. ...|...-.+.|-+||.=|...+...|.++.+...
T Consensus 544 ~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 544 SPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 899999887621 1 11 23355566778999999998763236888877654
No 211
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.12 E-value=0.13 Score=63.24 Aligned_cols=90 Identities=20% Similarity=0.099 Sum_probs=52.2
Q ss_pred hhhHHHhC-CCeEEEEecCCCcHHHH--HHHHHH-h-cCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCC
Q 003593 286 FPFARVMK-RKIIYHCGPTNSGKTYN--ALQRFM-E-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSN 360 (808)
Q Consensus 286 ~~i~~~l~-grdvlv~apTGSGKTl~--~L~~L~-~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~ 360 (808)
.++..++. ++.+++.|+.|+|||+. .+..++ . +..+++++||--.|..+.+.. |+...-+..-......
T Consensus 359 ~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~---g~~a~Ti~~~~~~~~~--- 432 (744)
T TIGR02768 359 EAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAES---GIESRTLASLEYAWAN--- 432 (744)
T ss_pred HHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhcc---CCceeeHHHHHhhhcc---
Confidence 35555555 57889999999999988 333332 2 456788889988777665432 3222111110000000
Q ss_pred eEEEeeecccCCCceeEEEEccchhhhc
Q 003593 361 HIACTVEMVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 361 ~i~~t~e~l~~~~lv~~vVIDEAh~i~d 388 (808)
. .......++||||||-++..
T Consensus 433 ------~-~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 433 ------G-RDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred ------C-cccCCCCcEEEEECcccCCH
Confidence 0 00111268999999999975
No 212
>PRK14974 cell division protein FtsY; Provisional
Probab=94.11 E-value=0.11 Score=57.64 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCeEEEEecCCCcHHHH---HHHHHHhcC-cEEEEc--ccHHHHH-HHHHHHHHccccccccccccccccccCCeEEEee
Q 003593 294 RKIIYHCGPTNSGKTYN---ALQRFMEAK-KGIYCS--PLRLLAM-EVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTV 366 (808)
Q Consensus 294 grdvlv~apTGSGKTl~---~L~~L~~~~-~~lvl~--Ptr~La~-Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~ 366 (808)
.+.++++||+|+|||+. ....+...+ +++++. +.|.-+. |+......+|+++. .+.. +..+ ...+.-.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~--~~~~-g~dp-~~v~~~ai 215 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI--KHKY-GADP-AAVAYDAI 215 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee--cccC-CCCH-HHHHHHHH
Confidence 46889999999999987 223344443 454554 4455554 44445556665432 1111 0000 00011111
Q ss_pred ecccCCCceeEEEEccchhhhc-ccchhHHHHHHhhccccceeccCC
Q 003593 367 EMVSTDEMYDVAVIDEIQMMSD-ACRGYAWTRALLGLMADEIHLCGD 412 (808)
Q Consensus 367 e~l~~~~lv~~vVIDEAh~i~d-~~~g~~~~~~l~~l~~~~i~l~~s 412 (808)
+.+... .+++|+||.|.++.. ...-..+..+...+.+..+.++.+
T Consensus 216 ~~~~~~-~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~ 261 (336)
T PRK14974 216 EHAKAR-GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGD 261 (336)
T ss_pred HHHHhC-CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeec
Confidence 222222 268999999999852 222233344444444444444433
No 213
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.98 E-value=0.21 Score=62.55 Aligned_cols=93 Identities=16% Similarity=0.070 Sum_probs=53.0
Q ss_pred chhhhHHHhCCC-eEEEEecCCCcHHHH--HHHHHH-h-cCcEEEEcccHHHHHHHHHHHHHcccccccccccccccccc
Q 003593 284 TWFPFARVMKRK-IIYHCGPTNSGKTYN--ALQRFM-E-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPF 358 (808)
Q Consensus 284 ~~~~i~~~l~gr-dvlv~apTGSGKTl~--~L~~L~-~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~ 358 (808)
|..++..++.++ .+++.|+.|+|||+. .+..+. . +..++.++||--.|..+.+. .|+....+..-.......
T Consensus 351 Qr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~---tGi~a~TI~sll~~~~~~ 427 (988)
T PRK13889 351 QADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGG---SGIASRTIASLEHGWGQG 427 (988)
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhc---cCcchhhHHHHHhhhccc
Confidence 344666667754 678999999999987 232232 2 44678888998877666432 233322111110000000
Q ss_pred CCeEEEeeecccCCCceeEEEEccchhhhcc
Q 003593 359 SNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389 (808)
Q Consensus 359 ~~~i~~t~e~l~~~~lv~~vVIDEAh~i~d~ 389 (808)
... + ...++||||||-|+...
T Consensus 428 -------~~~--l-~~~~vlIVDEASMv~~~ 448 (988)
T PRK13889 428 -------RDL--L-TSRDVLVIDEAGMVGTR 448 (988)
T ss_pred -------ccc--c-ccCcEEEEECcccCCHH
Confidence 000 1 11589999999999753
No 214
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.92 E-value=0.097 Score=64.15 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCeEEEEecCCCcHHHHHH---HHHH--h--cCcEEEEcccHHHHHHHHHHHHHc--ccccccccccccc--------cc
Q 003593 294 RKIIYHCGPTNSGKTYNAL---QRFM--E--AKKGIYCSPLRLLAMEVFDKVNAL--GVYCSLLTGQEKK--------LV 356 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L---~~L~--~--~~~~lvl~Ptr~La~Qi~~~l~~~--g~~~~l~~g~~~~--------~~ 356 (808)
+-+-|+.-.-|-|||.+.+ ..|. + -|.-|||+||-.+. .+.-+|+++ |.++--+.|.... ..
T Consensus 634 nlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL-nWEMElKRwcPglKILTYyGs~kErkeKRqgW~k 712 (1958)
T KOG0391|consen 634 NLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKRWCPGLKILTYYGSHKERKEKRQGWAK 712 (1958)
T ss_pred cccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhhhCCcceEeeecCCHHHHHHHhhcccC
Confidence 3366777889999999832 2222 1 24569999996654 456677776 4454444454321 11
Q ss_pred ccCCeEEEee-ecccC------CCceeEEEEccchhhhcccchhHHHHHHhhcccc-ceeccCCc
Q 003593 357 PFSNHIACTV-EMVST------DEMYDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDP 413 (808)
Q Consensus 357 ~~~~~i~~t~-e~l~~------~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~-~i~l~~s~ 413 (808)
+...|+.+|- ..+.. .+.+.|+||||||.+-. |...-..+++.+... +..|+++|
T Consensus 713 PnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn--fksqrWQAllnfnsqrRLLLtgTP 775 (1958)
T KOG0391|consen 713 PNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN--FKSQRWQALLNFNSQRRLLLTGTP 775 (1958)
T ss_pred CCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc--hhHHHHHHHhccchhheeeecCCc
Confidence 2344555442 11111 12289999999999986 444433455555443 44455555
No 215
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.89 E-value=0.077 Score=56.84 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=24.8
Q ss_pred eEEEEecCCCcHHHHHHHHHHh-------cCcEEEEcccHHHHH
Q 003593 296 IIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRLLAM 332 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~~L~~-------~~~~lvl~Ptr~La~ 332 (808)
..+|.||||||||-- |..|+. ..++++|+|..-.+-
T Consensus 89 I~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 678899999999954 333332 226789999876543
No 216
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.58 E-value=0.08 Score=59.49 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=33.2
Q ss_pred hCCCeEEEEecCCCcHHHH--HHHHHHhc--CcEEEEcccHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEA--KKGIYCSPLRLLAMEV 334 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~~L~~~--~~~lvl~Ptr~La~Qi 334 (808)
..+..+++.||-|+|||+. ++...+.. ..+++++||-.-|..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 5678999999999999998 45544433 4678889998777666
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.57 E-value=0.17 Score=56.01 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCeEEEEecCCCcHHHH---HHHHHHhcCcEEEEcccHHHHHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFD 336 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~---~L~~L~~~~~~lvl~Ptr~La~Qi~~ 336 (808)
.++.+++.||||+|||+. +...+...+..++..+...|+.++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 458899999999999976 34445566666666677777666654
No 218
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.55 E-value=0.19 Score=61.03 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=66.4
Q ss_pred hhhHHHhCCCe-EEEEecCCCcHHHH--H-HHHHH-hcCcEEEEcccHHHHHHHHHHHHHcccccccccccccc------
Q 003593 286 FPFARVMKRKI-IYHCGPTNSGKTYN--A-LQRFM-EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKK------ 354 (808)
Q Consensus 286 ~~i~~~l~grd-vlv~apTGSGKTl~--~-L~~L~-~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~------ 354 (808)
+++..+|..+| .++.|-+|+|||+. . +..|. .++++|..+=|-..+..+.-+|+.+++...-++..+..
T Consensus 676 ~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e 755 (1100)
T KOG1805|consen 676 QALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEE 755 (1100)
T ss_pred HHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccccchHHHH
Confidence 45566676665 57789999999988 2 33333 56688888899999999999999988764322222110
Q ss_pred -----------------ccccCCeEEEee----ecccCCCceeEEEEccchhhhc
Q 003593 355 -----------------LVPFSNHIACTV----EMVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 355 -----------------~~~~~~~i~~t~----e~l~~~~lv~~vVIDEAh~i~d 388 (808)
......++.||- ..+=..+.+|++|||||-.|+.
T Consensus 756 ~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 756 FTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred HhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEcccccccc
Confidence 001122344441 1111223399999999999874
No 219
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.48 E-value=0.14 Score=53.11 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.9
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
.++..||+|.|||+.
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 689999999999987
No 220
>PRK08116 hypothetical protein; Validated
Probab=93.26 E-value=0.22 Score=53.52 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=31.5
Q ss_pred CCeEEEEecCCCcHHHH---HHHHHHhcCcEEEEcccHHHHHHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKV 338 (808)
Q Consensus 294 grdvlv~apTGSGKTl~---~L~~L~~~~~~lvl~Ptr~La~Qi~~~l 338 (808)
+.-+++.|++|+|||+. +...+...+..++..+..+|+.++...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTY 161 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH
Confidence 34699999999999987 3445555565566666777776665554
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=93.17 E-value=0.25 Score=51.78 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=20.4
Q ss_pred CCeEEEEecCCCcHHHH--HH-HHHH-hcCcEEEEc
Q 003593 294 RKIIYHCGPTNSGKTYN--AL-QRFM-EAKKGIYCS 325 (808)
Q Consensus 294 grdvlv~apTGSGKTl~--~L-~~L~-~~~~~lvl~ 325 (808)
+..+++.||+|+|||+- ++ ..+. .+..++|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 34579999999999976 22 2222 344555554
No 222
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.98 E-value=0.067 Score=61.58 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=14.2
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
.++++||.|+|||..+
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999883
No 223
>CHL00181 cbbX CbbX; Provisional
Probab=92.89 E-value=0.73 Score=50.04 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
+-.+++.||+|+|||+.
T Consensus 59 ~~~ill~G~pGtGKT~l 75 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTV 75 (287)
T ss_pred CceEEEECCCCCCHHHH
Confidence 56789999999999998
No 224
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.78 E-value=0.14 Score=49.38 Aligned_cols=31 Identities=42% Similarity=0.448 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHH---HH-hcCcEEEEccc
Q 003593 297 IYHCGPTNSGKTYNALQR---FM-EAKKGIYCSPL 327 (808)
Q Consensus 297 vlv~apTGSGKTl~~L~~---L~-~~~~~lvl~Pt 327 (808)
+++.||+|+|||..+..- +. .++.++++..-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 678999999999873222 22 34566776643
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.72 E-value=0.21 Score=51.14 Aligned_cols=113 Identities=24% Similarity=0.242 Sum_probs=56.0
Q ss_pred CeEEEEecCCCcHHHHH----HHHHHhcCcE-EEEc-ccHHHHHHHHHHHHH-ccccccccc-cccccccccCCeEEEee
Q 003593 295 KIIYHCGPTNSGKTYNA----LQRFMEAKKG-IYCS-PLRLLAMEVFDKVNA-LGVYCSLLT-GQEKKLVPFSNHIACTV 366 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~----L~~L~~~~~~-lvl~-Ptr~La~Qi~~~l~~-~g~~~~l~~-g~~~~~~~~~~~i~~t~ 366 (808)
+.++++||||+|||++. ......+.++ +|.+ ..|.=|.+|.+.+.+ +|+++.... ...... ...-..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~-----~~~~~l 76 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAE-----IAREAL 76 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHH-----HHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHH-----HHHHHH
Confidence 46889999999999982 2222334344 4444 778877777776654 355532211 110000 000011
Q ss_pred ecccCCCceeEEEEccchhhhc-ccchhHHHHHHhhccccceeccCCc
Q 003593 367 EMVSTDEMYDVAVIDEIQMMSD-ACRGYAWTRALLGLMADEIHLCGDP 413 (808)
Q Consensus 367 e~l~~~~lv~~vVIDEAh~i~d-~~~g~~~~~~l~~l~~~~i~l~~s~ 413 (808)
+.+.. +.+++|+||=+-+... ...-..+...+..+.+..++++.++
T Consensus 77 ~~~~~-~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa 123 (196)
T PF00448_consen 77 EKFRK-KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSA 123 (196)
T ss_dssp HHHHH-TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEG
T ss_pred HHHhh-cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEec
Confidence 11111 1278999999866542 1112233444444455556655443
No 226
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=92.70 E-value=0.42 Score=57.81 Aligned_cols=84 Identities=24% Similarity=0.227 Sum_probs=66.1
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCC--eeEEEECCCCcccccc-CccEEEEeCCccCCCCccccCCHhHHHHHhCcc
Q 003593 482 HHCCVIYGALPPETRRQQANLFNDQDNE--FDVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRA 558 (808)
Q Consensus 482 ~~v~~lhg~l~~~~R~~~~~~F~~~~g~--~~ILVATda~~~GIDi-pV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRA 558 (808)
.....+.|..+...|......|+++.+. .-.||+|-|.+-|||+ -..+||.+|.++ ++.-=.|-+=|+
T Consensus 1189 kDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasW---------NPSyDtQSIFRv 1259 (1567)
T KOG1015|consen 1189 KDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASW---------NPSYDTQSIFRV 1259 (1567)
T ss_pred CceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEeccc---------CCccchHHHHHH
Confidence 3456677999999999999999874332 4579999999999999 599999999843 666667888899
Q ss_pred CCCCCCCCceEEEEEec
Q 003593 559 GRRGSIYPDGLTTTLNL 575 (808)
Q Consensus 559 GR~G~~~~~G~~i~l~~ 575 (808)
-|+|.. .+-++|.|+.
T Consensus 1260 yRfGQt-KPvyiYRfiA 1275 (1567)
T KOG1015|consen 1260 YRFGQT-KPVYIYRFIA 1275 (1567)
T ss_pred HhhcCc-Cceeehhhhh
Confidence 999973 2456666653
No 227
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.50 E-value=0.38 Score=52.71 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=18.7
Q ss_pred eEEEEecCCCcHHHHHHHHHH-hcCcEEEEccc
Q 003593 296 IIYHCGPTNSGKTYNALQRFM-EAKKGIYCSPL 327 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~~L~-~~~~~lvl~Pt 327 (808)
-+++.||+|+|||..+-.... .+...+++.+.
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 455589999999987322111 13344555554
No 228
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=92.35 E-value=0.33 Score=57.85 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=38.6
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHhcCcEEEEcccHHHHHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
|-=..+++.|--|+|||++ ++.+.+.-.++|..||+.-|+.+...|+
T Consensus 69 LPFs~~~itG~AGsGKst~-i~~l~~~l~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 69 LPFSVYLITGTAGAGKSTS-IQTLNENLDCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred CCeEEEEEecCCCCChHHH-HHHHHHhcCEEEEcchHHHHHhhhcccc
Confidence 3345789999999999998 5555555689999999999999988666
No 229
>PRK05642 DNA replication initiation factor; Validated
Probab=92.31 E-value=0.37 Score=50.70 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=22.6
Q ss_pred CeEEEEecCCCcHHHH--HH-HHHHh-cCcEEEEcccHHHHH
Q 003593 295 KIIYHCGPTNSGKTYN--AL-QRFME-AKKGIYCSPLRLLAM 332 (808)
Q Consensus 295 rdvlv~apTGSGKTl~--~L-~~L~~-~~~~lvl~Ptr~La~ 332 (808)
..+++.||+|+|||+- ++ ..+.. +.+++|+. ...+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHh
Confidence 5688999999999976 22 12223 34555544 445443
No 230
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.20 E-value=0.12 Score=60.11 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=42.0
Q ss_pred CeEEEEecCCCcHHHH-HHHHHHhc-CcEEEEcccHHHHHHHHHHHHHcccccccc
Q 003593 295 KIIYHCGPTNSGKTYN-ALQRFMEA-KKGIYCSPLRLLAMEVFDKVNALGVYCSLL 348 (808)
Q Consensus 295 rdvlv~apTGSGKTl~-~L~~L~~~-~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~ 348 (808)
..++++||||||||.. +++.|+.. +.+||.-|--+|+......+++.|..+-++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEe
Confidence 3699999999999998 45666654 456666699999999998888877655443
No 231
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.12 E-value=0.17 Score=54.29 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=19.5
Q ss_pred eeEEEEccchhhhcccchhHHHHHHhhcc
Q 003593 375 YDVAVIDEIQMMSDACRGYAWTRALLGLM 403 (808)
Q Consensus 375 v~~vVIDEAh~i~d~~~g~~~~~~l~~l~ 403 (808)
+.++|+||||.|...-|+ .+++.+...+
T Consensus 130 fKiiIlDEcdsmtsdaq~-aLrr~mE~~s 157 (346)
T KOG0989|consen 130 FKIIILDECDSMTSDAQA-ALRRTMEDFS 157 (346)
T ss_pred ceEEEEechhhhhHHHHH-HHHHHHhccc
Confidence 789999999999865343 4455555533
No 232
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.10 E-value=0.25 Score=49.73 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=29.2
Q ss_pred hCCCeEEEEecCCCcHHHH---HHHHHHhcCcEEEEcccHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVF 335 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~---~L~~L~~~~~~lvl~Ptr~La~Qi~ 335 (808)
-.++++++.||||+|||+. ....+...+..++..+..+|+..+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 3578999999999999987 3344555666555667777776654
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.09 E-value=0.15 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.7
Q ss_pred eEEEEecCCCcHHHH--HHHHHH
Q 003593 296 IIYHCGPTNSGKTYN--ALQRFM 316 (808)
Q Consensus 296 dvlv~apTGSGKTl~--~L~~L~ 316 (808)
+|+++||+|+|||.. ++..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999988 444444
No 234
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.74 E-value=0.1 Score=59.04 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=40.9
Q ss_pred eEEEEecCCCcHHHH-HHHHHHh-cCcEEEEcccHHHHHHHHHHHHHccccccccc
Q 003593 296 IIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (808)
Q Consensus 296 dvlv~apTGSGKTl~-~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~ 349 (808)
.++++||||||||.+ +++.++. .+.+||+-|--++........+..|..+-++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 368999999999988 4555554 45667777999999888877777776665544
No 235
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.66 E-value=0.36 Score=50.18 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.7
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.++.+++.||+|+|||..
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999976
No 236
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.65 E-value=0.19 Score=55.26 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=24.8
Q ss_pred eEEEEccchhhhcccchhHHHHHHhhc-cccceeccCCchH
Q 003593 376 DVAVIDEIQMMSDACRGYAWTRALLGL-MADEIHLCGDPSV 415 (808)
Q Consensus 376 ~~vVIDEAh~i~d~~~g~~~~~~l~~l-~~~~i~l~~s~~~ 415 (808)
.++||||||.+. -+.+..++... ..+++.++++++-
T Consensus 353 ~FiIIDEaQNLT----pheikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLT----PHELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccC----HHHHHHHHHhccCCCEEEEcCCHHH
Confidence 689999999997 34555555544 3456777777654
No 237
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.64 E-value=0.14 Score=56.92 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=28.2
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHH-hcCcEEEEcccHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSPLRLLA 331 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~-~~~~~lvl~Ptr~La 331 (808)
+..+++++++||||||||+. +|...+ ...+.+.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 46789999999999999987 333322 233555555666653
No 238
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.63 E-value=1 Score=55.30 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=76.8
Q ss_pred HHHHhhcCCCCEEEEec-hhHHHHHHHHHHHhcCC------eEEEEcCCCCHHHHHHHHHHHhc--CCCCeeEEEEC--C
Q 003593 449 LGDLRNVRSGDCVVAFS-RREIFEVKMAIEKHTNH------HCCVIYGALPPETRRQQANLFND--QDNEFDVLVAS--D 517 (808)
Q Consensus 449 l~~l~~~~~g~~II~fs-rk~~~~l~~~L~~~~g~------~v~~lhg~l~~~~R~~~~~~F~~--~~g~~~ILVAT--d 517 (808)
+..+....+|.++|||+ ......++..+.+. |. .-.++.-+-...++..+++.|+. ..+.-.||+|+ .
T Consensus 514 i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~-~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 514 LVEFSKIIPDGIVVFFPSYSYLENIVSTWKEM-GILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred HHHHhhcCCCcEEEEccCHHHHHHHHHHHHhc-CHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 33444556788999995 45555555555431 11 01122222222578889999953 12455699999 8
Q ss_pred CCccccccC---ccEEEEeCCccCCCC----------------------ccccCCHhHHHHHhCccCCCCCCCCceEEEE
Q 003593 518 AVGMGLNLN---IRRVVFYSLSKYNGD----------------------KIIPVPGSQVKQIAGRAGRRGSIYPDGLTTT 572 (808)
Q Consensus 518 a~~~GIDip---V~~VI~~~~~K~dg~----------------------~~~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~ 572 (808)
.+..|||++ .+.||..++|..+.. -+...-.-...|-+||+=|...+ .|.+++
T Consensus 593 k~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D--~G~iil 670 (705)
T TIGR00604 593 KVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD--YGSIVL 670 (705)
T ss_pred cccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc--eEEEEE
Confidence 999999993 999999998652111 00111234567999999998874 687766
Q ss_pred Ee
Q 003593 573 LN 574 (808)
Q Consensus 573 l~ 574 (808)
+.
T Consensus 671 lD 672 (705)
T TIGR00604 671 LD 672 (705)
T ss_pred Ee
Confidence 64
No 239
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.50 E-value=0.98 Score=43.68 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCC--eeEEEECCC--CccccccC---ccEEEEeCCccCCCC----------------------cc
Q 003593 493 PETRRQQANLFNDQDNE--FDVLVASDA--VGMGLNLN---IRRVVFYSLSKYNGD----------------------KI 543 (808)
Q Consensus 493 ~~~R~~~~~~F~~~~g~--~~ILVATda--~~~GIDip---V~~VI~~~~~K~dg~----------------------~~ 543 (808)
..+...+++.|++ ... -.||+|+.- +..|||+| .+.||..++|-.+.. -+
T Consensus 30 ~~~~~~~l~~f~~-~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~ 108 (142)
T smart00491 30 SGETEELLEKYSA-ACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVY 108 (142)
T ss_pred CchHHHHHHHHHH-hcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3345778889974 211 258888877 99999995 799999998642111 02
Q ss_pred ccCCHhHHHHHhCccCCCCCCCCceEEEEEe
Q 003593 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLN 574 (808)
Q Consensus 544 ~P~s~~~y~Qr~GRAGR~G~~~~~G~~i~l~ 574 (808)
.|...-...|-+||+=|...+ .|.++.+.
T Consensus 109 ~~~a~~~~~Qa~GR~iR~~~D--~g~i~l~D 137 (142)
T smart00491 109 LFDAMRALAQAIGRAIRHKND--YGVVVLLD 137 (142)
T ss_pred HHHHHHHHHHHhCccccCccc--eEEEEEEe
Confidence 234456678999999998874 57666553
No 240
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.44 E-value=0.19 Score=51.94 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=21.4
Q ss_pred ccCCCceeEEEEccchhhhcccchhHHHHHHhhccc
Q 003593 369 VSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMA 404 (808)
Q Consensus 369 l~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~ 404 (808)
+.+++ ...+|+||||.|.+. -..++++.+.--+.
T Consensus 109 lp~gr-hKIiILDEADSMT~g-AQQAlRRtMEiyS~ 142 (333)
T KOG0991|consen 109 LPPGR-HKIIILDEADSMTAG-AQQALRRTMEIYSN 142 (333)
T ss_pred CCCCc-eeEEEeeccchhhhH-HHHHHHHHHHHHcc
Confidence 34455 689999999999862 23345555443333
No 241
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=91.31 E-value=0.24 Score=61.16 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=52.4
Q ss_pred CCeEEEEecCCCcHHHHH-HHHHH---hcCcEEEEcccHHHHHHH----HHHHHHccccccccccccc-----cccccCC
Q 003593 294 RKIIYHCGPTNSGKTYNA-LQRFM---EAKKGIYCSPLRLLAMEV----FDKVNALGVYCSLLTGQEK-----KLVPFSN 360 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~-L~~L~---~~~~~lvl~Ptr~La~Qi----~~~l~~~g~~~~l~~g~~~-----~~~~~~~ 360 (808)
.+--|+-|.||=||||++ |++.+ .+..+-||+..-=||.-= ..-+.-+|..++++..... +..-...
T Consensus 182 h~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~rr~aY~~D 261 (1112)
T PRK12901 182 HQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARRKAYNAD 261 (1112)
T ss_pred cCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHHHHHhCCCc
Confidence 344467999999999993 34333 234445556666665433 3334455888777654221 1111234
Q ss_pred eEEEee-----ecc-----c-CC----CceeEEEEccchhhh
Q 003593 361 HIACTV-----EMV-----S-TD----EMYDVAVIDEIQMMS 387 (808)
Q Consensus 361 ~i~~t~-----e~l-----~-~~----~lv~~vVIDEAh~i~ 387 (808)
+.++|- ++| . +. +.+.+.||||+|-++
T Consensus 262 ItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 262 ITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 455542 111 1 11 227899999999873
No 242
>PRK11054 helD DNA helicase IV; Provisional
Probab=91.29 E-value=0.58 Score=56.88 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=48.4
Q ss_pred HHHHHCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHHHHHHH---Hh-----cCcEEEEcccHHHHHHHHHHHHHc
Q 003593 272 AMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRF---ME-----AKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 272 ~~l~~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~L~~L---~~-----~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
+.+....-...++-|..+.......++|.|..|||||.+.+..+ +. +..+|+++.++..|..+.+++...
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 33333333344454544444566678999999999999944332 32 237899999999999999999764
No 243
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=0.12 Score=57.62 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=23.9
Q ss_pred hCCCeEEEEecCCCcHHHH--HHHHHHhcCcEEE
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEAKKGIY 323 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~~L~~~~~~lv 323 (808)
|..-+||+.||||||||+. -|..++.-+-+|.
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAIC 257 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence 5566899999999999987 4666665554443
No 244
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.23 E-value=0.65 Score=49.64 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=36.7
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEc---ccHHHHHHHHHHHHHcccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCS---PLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~---Ptr~La~Qi~~~l~~~g~~ 344 (808)
..|..+++.||+|+|||..+++.+. .+.+++|++ |...+..++......+|..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 3588999999999999998555443 345888887 4555555555555555544
No 245
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.15 E-value=0.6 Score=59.05 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=51.8
Q ss_pred hhHHH-hCCCeEEEEecCCCcHHHH--HHHHHH-h-cCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCe
Q 003593 287 PFARV-MKRKIIYHCGPTNSGKTYN--ALQRFM-E-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNH 361 (808)
Q Consensus 287 ~i~~~-l~grdvlv~apTGSGKTl~--~L~~L~-~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~ 361 (808)
++..+ ..++.++++|+.|+|||+. .+..+. . +..++.++||---|..+.+.. |+.+.-+.+-.......
T Consensus 389 Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~---Gi~a~TIas~ll~~~~~--- 462 (1102)
T PRK13826 389 AIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEA---GIQSRTLSSWELRWNQG--- 462 (1102)
T ss_pred HHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhh---CCCeeeHHHHHhhhccC---
Confidence 44433 3577899999999999998 333332 3 446788889987776664432 44433222110000000
Q ss_pred EEEeeecccCCCceeEEEEccchhhhc
Q 003593 362 IACTVEMVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 362 i~~t~e~l~~~~lv~~vVIDEAh~i~d 388 (808)
...+ ..-++||||||-|+..
T Consensus 463 ----~~~l---~~~~vlVIDEAsMv~~ 482 (1102)
T PRK13826 463 ----RDQL---DNKTVFVLDEAGMVAS 482 (1102)
T ss_pred ----ccCC---CCCcEEEEECcccCCH
Confidence 0001 1147999999999974
No 246
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.01 E-value=0.38 Score=50.60 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=39.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
.|..+++.||+|+|||+.+++.+. .+.+++|++ +-+-..|+.+++..+|.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~~ 75 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWDV 75 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCCH
Confidence 478999999999999998555443 345778887 5667778888888877653
No 247
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.98 E-value=0.56 Score=56.72 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=38.5
Q ss_pred eEEEEecCCCcHHHHHHHHHHh-cCcEEEEcccHHHHHHHHHHHHHc
Q 003593 296 IIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
..++.|.||||||+.+...+.. +..+|||+|...+|.|++..|+.+
T Consensus 31 ~~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred cEEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 5668999999999985544433 457899999999999999999887
No 248
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.98 E-value=0.37 Score=50.13 Aligned_cols=53 Identities=28% Similarity=0.384 Sum_probs=36.7
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHH----Hh-cCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRF----ME-AKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L----~~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
-.|..+++.||+|+|||+-+++.+ .. +.+++|++ +-+-..++.+.++++|.+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d~ 74 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWDL 74 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-H
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCcH
Confidence 357899999999999998855544 34 55777776 4555678888888887653
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.97 E-value=0.3 Score=56.54 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=41.7
Q ss_pred CeEEEEecCCCcHHHH--HH-HHHHhc--CcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecc
Q 003593 295 KIIYHCGPTNSGKTYN--AL-QRFMEA--KKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (808)
Q Consensus 295 rdvlv~apTGSGKTl~--~L-~~L~~~--~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l 369 (808)
..+++.||+|+|||+. ++ ..+... +..++.++...+..+....+..... -++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~----------------------~~~~ 206 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTM----------------------EEFK 206 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcH----------------------HHHH
Confidence 4689999999999987 22 233332 3334344556666666555542100 0000
Q ss_pred cCCCceeEEEEccchhhhc
Q 003593 370 STDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 370 ~~~~lv~~vVIDEAh~i~d 388 (808)
..-+.++++||||+|.+..
T Consensus 207 ~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 207 EKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHhcCCEEEEehhhhhcC
Confidence 1111268999999999863
No 250
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.91 E-value=0.47 Score=51.86 Aligned_cols=40 Identities=35% Similarity=0.327 Sum_probs=28.7
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHHh----cCcEEEEcccHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFME----AKKGIYCSPLRLL 330 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~~----~~~~lvl~Ptr~L 330 (808)
+..+++++++||||||||+. +|...+. ..+.+++--+.||
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 35678999999999999988 4444332 3456666677776
No 251
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.80 E-value=0.45 Score=52.58 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.4
Q ss_pred CeEEEEecCCCcHHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNAL 312 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~L 312 (808)
..+++.||+|+|||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 478999999999998843
No 252
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=90.77 E-value=1.3 Score=52.92 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=41.3
Q ss_pred hhHHHhCCCeEEEEecCCCcHHHH---HHHHHH--hcCcEEEEcccHHHHHHHHHHHHHc
Q 003593 287 PFARVMKRKIIYHCGPTNSGKTYN---ALQRFM--EAKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 287 ~i~~~l~grdvlv~apTGSGKTl~---~L~~L~--~~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
.+......+-.++.+|=|-|||.+ ++.++. .+..++|.+|...-+.++++++...
T Consensus 180 ~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 180 RIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred HHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHH
Confidence 344557788889999999999988 233333 3557889999999999988887654
No 253
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.69 E-value=0.57 Score=43.55 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.9
Q ss_pred EEEEecCCCcHHHH
Q 003593 297 IYHCGPTNSGKTYN 310 (808)
Q Consensus 297 vlv~apTGSGKTl~ 310 (808)
+++.||.|+|||+.
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999988
No 254
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.47 E-value=0.33 Score=39.97 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCCeEEEEecCCCcHHHH--HHHHHHhc
Q 003593 293 KRKIIYHCGPTNSGKTYN--ALQRFMEA 318 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~--~L~~L~~~ 318 (808)
.|..+++.||+|||||+. +++.++-+
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356899999999999998 66666544
No 255
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=90.42 E-value=0.43 Score=58.98 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=52.2
Q ss_pred eEEEEecCCCcHHHHH-HHHHH---hcCcEEEEcccHHHHHHHHHHH----HHccccccccccccccc----cccCCeEE
Q 003593 296 IIYHCGPTNSGKTYNA-LQRFM---EAKKGIYCSPLRLLAMEVFDKV----NALGVYCSLLTGQEKKL----VPFSNHIA 363 (808)
Q Consensus 296 dvlv~apTGSGKTl~~-L~~L~---~~~~~lvl~Ptr~La~Qi~~~l----~~~g~~~~l~~g~~~~~----~~~~~~i~ 363 (808)
--|+-|.||=|||+++ |+..+ .+..+-||+..-=||.-=.+.+ .-+|..++++....... .-...+++
T Consensus 153 G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~~DItY 232 (1025)
T PRK12900 153 GKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITY 232 (1025)
T ss_pred CCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhCCCccee
Confidence 3357899999999993 34333 2334445556666665444443 44577777764432221 11344555
Q ss_pred Eee-----e-----ccc-CC----CceeEEEEccchhhh
Q 003593 364 CTV-----E-----MVS-TD----EMYDVAVIDEIQMMS 387 (808)
Q Consensus 364 ~t~-----e-----~l~-~~----~lv~~vVIDEAh~i~ 387 (808)
+|- + |.. +. +.+.+.||||+|.++
T Consensus 233 gTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 233 GTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred cCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 552 1 111 11 227899999999873
No 256
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.38 E-value=0.34 Score=48.90 Aligned_cols=20 Identities=50% Similarity=0.426 Sum_probs=18.1
Q ss_pred HhCCCeEEEEecCCCcHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~ 310 (808)
+..|..++++||||||||+.
T Consensus 22 v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 22 VEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HhCCCEEEEECCCCCCHHHH
Confidence 46789999999999999987
No 257
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=0.27 Score=57.11 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.4
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+.++..||.|+|||++
T Consensus 36 ha~Lf~Gp~G~GKTT~ 51 (491)
T PRK14964 36 QSILLVGASGVGKTTC 51 (491)
T ss_pred ceEEEECCCCccHHHH
Confidence 4689999999999998
No 258
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.20 E-value=0.52 Score=51.31 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.7
Q ss_pred CeEEEEecCCCcHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~ 311 (808)
..+++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999873
No 259
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.19 Score=56.34 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=15.5
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
...++++.||||+|||..
T Consensus 41 ~p~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 41 RPSNIIIYGPTGTGKTAT 58 (366)
T ss_pred CCccEEEECCCCCCHhHH
Confidence 344799999999999998
No 260
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.15 E-value=0.51 Score=52.04 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=26.7
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHH----hcCcEEEEcccHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFM----EAKKGIYCSPLRLL 330 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~----~~~~~lvl~Ptr~L 330 (808)
+..+++++++|+||||||+. +|.... ...+.+.+-.+.||
T Consensus 141 v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 141 IDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 45788999999999999988 443332 12244555466665
No 261
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.11 E-value=0.33 Score=54.20 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
...+++.||+|+|||..
T Consensus 40 ~~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAV 56 (365)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 35799999999999988
No 262
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=90.11 E-value=0.22 Score=61.48 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=25.2
Q ss_pred eeEEEEccchhhhcccchhHHHHHHhhccccceeccCCchHHHHHHHH
Q 003593 375 YDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVLDVVRKI 422 (808)
Q Consensus 375 v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l 422 (808)
+.++||||||+|....+ ..+.+.+...+...+.++.+....++...|
T Consensus 121 ~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~tt~~~kLl~TI 167 (824)
T PRK07764 121 YKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFATTEPDKVIGTI 167 (824)
T ss_pred ceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 78999999999985321 233344444444433333333333333333
No 263
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.83 E-value=0.22 Score=58.43 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=13.6
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-.+..||.|+|||..
T Consensus 40 a~Lf~Gp~G~GKTt~ 54 (509)
T PRK14958 40 AYLFTGTRGVGKTTI 54 (509)
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999988
No 264
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.80 E-value=0.28 Score=52.51 Aligned_cols=39 Identities=31% Similarity=0.232 Sum_probs=26.4
Q ss_pred hCCCeEEEEecCCCcHHHH--HHH-HHHhc-CcEEEEcccHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQ-RFMEA-KKGIYCSPLRLL 330 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~-~L~~~-~~~lvl~Ptr~L 330 (808)
..+..++++||||||||+. ++. .+-.. .+++++--..|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4588999999999999998 333 23334 455666566554
No 265
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.80 E-value=0.28 Score=58.57 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCcHHHH-HHHHHHh-cCcEEEEcccHHHHHHHHHHHHHccccccccc
Q 003593 294 RKIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (808)
Q Consensus 294 grdvlv~apTGSGKTl~-~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~ 349 (808)
.+.++++||||||||.. .++.|+. ++.+||+=|--|+........++.|..+-++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 35789999999999998 5566665 45667777999999999988888887665543
No 266
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.70 E-value=0.3 Score=54.87 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=14.0
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
-+++.||.|+|||+.+
T Consensus 40 ~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 40 AWLLSGTRGVGKTTIA 55 (363)
T ss_pred EEEEecCCCCCHHHHH
Confidence 4689999999999883
No 267
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=89.51 E-value=0.42 Score=52.27 Aligned_cols=65 Identities=22% Similarity=0.364 Sum_probs=40.4
Q ss_pred CCCCcchhhhHHHhCCCeEEEEecCCCcHHHHH----HHHHHhcC-cEEEEc-ccHHHHHHHHHHHHHcccccccccccc
Q 003593 279 LTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA----LQRFMEAK-KGIYCS-PLRLLAMEVFDKVNALGVYCSLLTGQE 352 (808)
Q Consensus 279 ~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~----L~~L~~~~-~~lvl~-Ptr~La~Qi~~~l~~~g~~~~l~~g~~ 352 (808)
...|.|-..+..+.....++++||-|+|||+-+ ..++..+. +-|+++ |- -..|.+.+++-|+.
T Consensus 128 ~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPa-----------VEAGEklGfLPGdl 196 (348)
T COG1702 128 PKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPA-----------VEAGEKLGFLPGDL 196 (348)
T ss_pred ecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcc-----------hhcCcccCcCCCch
Confidence 334445444455678888999999999999873 33443332 236666 72 23366666766665
Q ss_pred cc
Q 003593 353 KK 354 (808)
Q Consensus 353 ~~ 354 (808)
..
T Consensus 197 ~e 198 (348)
T COG1702 197 RE 198 (348)
T ss_pred hh
Confidence 43
No 268
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.51 E-value=0.46 Score=51.46 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=48.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHh------cC----cE-EEEcccHHHHHHHHHHHH-HccccccccccccccccccCC
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFME------AK----KG-IYCSPLRLLAMEVFDKVN-ALGVYCSLLTGQEKKLVPFSN 360 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~~------~~----~~-lvl~Ptr~La~Qi~~~l~-~~g~~~~l~~g~~~~~~~~~~ 360 (808)
.=.+++++|+||.|||..+-..... .. .+ +|-+|...-....|..+- ++|.+..-....... ..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~----~~ 135 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKL----EQ 135 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHH----HH
Confidence 3357999999999999973222211 11 23 334577776677766653 445553321111000 00
Q ss_pred eEEEeeecccCCCceeEEEEccchhhhc
Q 003593 361 HIACTVEMVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 361 ~i~~t~e~l~~~~lv~~vVIDEAh~i~d 388 (808)
. ...++..-. +.++||||+|.++.
T Consensus 136 ~---~~~llr~~~-vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 136 Q---VLRLLRRLG-VRMLIIDEFHNLLA 159 (302)
T ss_pred H---HHHHHHHcC-CcEEEeechHHHhc
Confidence 0 011222222 78999999999875
No 269
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.43 E-value=0.43 Score=54.41 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=26.8
Q ss_pred CeEEEEecCCCcHHHH--HH-HHHHhc---CcEEEEcccHHHHHHHHHHHH
Q 003593 295 KIIYHCGPTNSGKTYN--AL-QRFMEA---KKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 295 rdvlv~apTGSGKTl~--~L-~~L~~~---~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
..+++.||+|+|||+. ++ ..+... ..++|+ +...+..++...+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~~~~~~~~~~~ 186 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEKFTNDFVNALR 186 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHHHHHHHHHHHH
Confidence 4678999999999987 22 233332 345555 44456555554443
No 270
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.38 E-value=0.28 Score=58.51 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.6
Q ss_pred CeEEEEecCCCcHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~ 311 (808)
+-+|++||.|+|||..+
T Consensus 38 HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIA 54 (702)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35699999999999883
No 271
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.36 E-value=0.26 Score=59.39 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.5
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+|++||.|+|||+.
T Consensus 40 AyLFtGPpGvGKTTl 54 (830)
T PRK07003 40 AYLFTGTRGVGKTTL 54 (830)
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999988
No 272
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.34 E-value=0.29 Score=58.22 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.6
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+|+.||.|.|||+.
T Consensus 40 A~LFtGP~GvGKTTL 54 (700)
T PRK12323 40 AYLFTGTRGVGKTTL 54 (700)
T ss_pred EEEEECCCCCCHHHH
Confidence 568999999999988
No 273
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.28 E-value=0.75 Score=49.81 Aligned_cols=47 Identities=34% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCcHHHHH--HH-HHH-h-c-CcEEEEc--ccHHHHHHHHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYNA--LQ-RFM-E-A-KKGIYCS--PLRLLAMEVFDKVN 339 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~--L~-~L~-~-~-~~~lvl~--Ptr~La~Qi~~~l~ 339 (808)
.++.++++||||+|||+.+ |. .+. . + .++.++. |.|.-+.++...+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~ 247 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYA 247 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHH
Confidence 5779999999999999882 22 222 2 3 3444444 66766655555543
No 274
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.18 E-value=0.6 Score=50.22 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=15.8
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
...--|+|.||||||||+.
T Consensus 123 ~~~GLILVTGpTGSGKSTT 141 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTT 141 (353)
T ss_pred CCCceEEEeCCCCCcHHHH
Confidence 3455789999999999987
No 275
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.14 E-value=0.82 Score=51.02 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=41.8
Q ss_pred eEEEEecCCCcHHHHH-HHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecccCCCc
Q 003593 296 IIYHCGPTNSGKTYNA-LQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVSTDEM 374 (808)
Q Consensus 296 dvlv~apTGSGKTl~~-L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l~~~~l 374 (808)
++|..||+|+|||..+ +.+-..+....-++.+..=..++.+.+.+.-.. ...++
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~------------------------~~~gr- 104 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKN------------------------RLLGR- 104 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHH------------------------HhcCC-
Confidence 7899999999999873 333333444556666666555555555431000 00011
Q ss_pred eeEEEEccchhhhc
Q 003593 375 YDVAVIDEIQMMSD 388 (808)
Q Consensus 375 v~~vVIDEAh~i~d 388 (808)
=.++.|||+|++.-
T Consensus 105 ~tiLflDEIHRfnK 118 (436)
T COG2256 105 RTILFLDEIHRFNK 118 (436)
T ss_pred ceEEEEehhhhcCh
Confidence 25899999999874
No 276
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=89.09 E-value=0.57 Score=51.62 Aligned_cols=20 Identities=40% Similarity=0.338 Sum_probs=17.8
Q ss_pred HhCCCeEEEEecCCCcHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~ 310 (808)
+..+++++++|+||||||+.
T Consensus 145 v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred HHcCCeEEEECCCCCCHHHH
Confidence 45788999999999999976
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.05 E-value=0.22 Score=52.95 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCcHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~ 311 (808)
...++++||+|+|||+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 347899999999999883
No 278
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.04 E-value=0.33 Score=53.83 Aligned_cols=41 Identities=29% Similarity=0.276 Sum_probs=27.2
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHHh-cCcEEEEcccHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFME-AKKGIYCSPLRLLA 331 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~~-~~~~lvl~Ptr~La 331 (808)
+..+++++++|+||||||+. +|...+. ..+.+++--+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccc
Confidence 46789999999999999988 4433333 33444444555543
No 279
>PLN03025 replication factor C subunit; Provisional
Probab=88.74 E-value=1.2 Score=49.06 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=13.8
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
.+++.||+|+|||..
T Consensus 36 ~lll~Gp~G~GKTtl 50 (319)
T PLN03025 36 NLILSGPPGTGKTTS 50 (319)
T ss_pred eEEEECCCCCCHHHH
Confidence 589999999999987
No 280
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.62 E-value=1.3 Score=46.20 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=41.7
Q ss_pred CeEEEEecCCCcHHHH--HH-HHHHh---cCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeec
Q 003593 295 KIIYHCGPTNSGKTYN--AL-QRFME---AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEM 368 (808)
Q Consensus 295 rdvlv~apTGSGKTl~--~L-~~L~~---~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~ 368 (808)
.-+++.||+|+|||.- ++ ..+.. +.+++| .+..+.+..+...+.... ...+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y-~~~~~f~~~~~~~~~~~~-~~~~--------------------- 91 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVY-LSAEEFIREFADALRDGE-IEEF--------------------- 91 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEE-EEHHHHHHHHHHHHHTTS-HHHH---------------------
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcccccccee-ecHHHHHHHHHHHHHccc-chhh---------------------
Confidence 3588999999999985 22 22222 234444 455567766666665410 0000
Q ss_pred ccCCCceeEEEEccchhhhc
Q 003593 369 VSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 369 l~~~~lv~~vVIDEAh~i~d 388 (808)
...-+.+++++||.+|.+..
T Consensus 92 ~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 92 KDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HHHHCTSSEEEEETGGGGTT
T ss_pred hhhhhcCCEEEEecchhhcC
Confidence 01111279999999999985
No 281
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.61 E-value=0.6 Score=52.80 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
..++++.||+|+|||+.
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999998
No 282
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.54 E-value=0.16 Score=51.71 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=17.7
Q ss_pred eEEEEecCCCcHHHHHHHH----HHhcCcEEEEcccHHHH
Q 003593 296 IIYHCGPTNSGKTYNALQR----FMEAKKGIYCSPLRLLA 331 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~~----L~~~~~~lvl~Ptr~La 331 (808)
..+++|..|||||+.++.. .+..++.||. ....|.
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~ 40 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLN 40 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcc
Confidence 3688999999999985444 3344555554 444343
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.50 E-value=1.4 Score=49.66 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH---h-cCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM---E-AKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~---~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.|.-+++.|++|+|||+..++... . +++++|++-- +-..|+..+...+|..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~ 135 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGIS 135 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCC
Confidence 468899999999999998544332 2 3577888643 3456777777776643
No 284
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.46 E-value=0.29 Score=60.12 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=13.4
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+|+.||.|+|||+.
T Consensus 40 AyLFtGPpGtGKTTL 54 (944)
T PRK14949 40 AYLFTGTRGVGKTSL 54 (944)
T ss_pred EEEEECCCCCCHHHH
Confidence 358999999999988
No 285
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=0.43 Score=56.78 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=33.3
Q ss_pred hCCCeEEEEecCCCcHHHH--HHHHHHhcCcEEEE---cccHHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEAKKGIYC---SPLRLLAMEVFD 336 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~~L~~~~~~lvl---~Ptr~La~Qi~~ 336 (808)
-.|+.|-++||.|||||++ .|+.+++.-.+=|+ .|.+.+=.....
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 5689999999999999999 57777765444333 388777666555
No 286
>PRK04195 replication factor C large subunit; Provisional
Probab=88.31 E-value=1.4 Score=51.59 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.9
Q ss_pred CCeEEEEecCCCcHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~ 311 (808)
.+.+++.||+|+|||+.+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999883
No 287
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.13 E-value=2 Score=48.28 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=30.5
Q ss_pred hCCCeEEEEecCCCcHHHHH--H-HHHH-hcCcEEEE-c-ccHHHHHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNA--L-QRFM-EAKKGIYC-S-PLRLLAMEVFDKVN 339 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~--L-~~L~-~~~~~lvl-~-Ptr~La~Qi~~~l~ 339 (808)
-.++.++++||||+|||+.+ | ..+. .+.++.++ + |.|.-|.++.....
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~ya 257 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYA 257 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHh
Confidence 46889999999999999872 1 2222 33344444 4 77776655544443
No 288
>PF13871 Helicase_C_4: Helicase_C-like
Probab=88.10 E-value=1.8 Score=46.54 Aligned_cols=56 Identities=30% Similarity=0.396 Sum_probs=45.4
Q ss_pred HHHHHHhcCCCCeeEEEECCCCccccccC-c--------cEEEEeCCccCCCCccccCCHhHHHHHhCccCCCCCC
Q 003593 498 QQANLFNDQDNEFDVLVASDAVGMGLNLN-I--------RRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSI 564 (808)
Q Consensus 498 ~~~~~F~~~~g~~~ILVATda~~~GIDip-V--------~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~ 564 (808)
...+.|. +|+..|+|-|++++.||.+- - |.-|...+ |.|....+|..||+-|.|..
T Consensus 52 ~e~~~F~--~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~---------pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFM--DGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLEL---------PWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHh--CCCceEEEEecccccccchhccccCCCCCceEEEEeeC---------CCCHHHHHHHhccccccccc
Confidence 4567895 49999999999999999872 1 12245556 88999999999999999984
No 289
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.01 E-value=0.46 Score=54.57 Aligned_cols=17 Identities=47% Similarity=0.685 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
.--+++.||||||||+.
T Consensus 258 ~GliLvTGPTGSGKTTT 274 (500)
T COG2804 258 QGLILVTGPTGSGKTTT 274 (500)
T ss_pred CeEEEEeCCCCCCHHHH
Confidence 44789999999999998
No 290
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=87.86 E-value=0.45 Score=52.14 Aligned_cols=39 Identities=33% Similarity=0.244 Sum_probs=27.5
Q ss_pred hCCCeEEEEecCCCcHHHH--HHHHHH-hcCcEEEEcccHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSPLRLL 330 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~~L~-~~~~~lvl~Ptr~L 330 (808)
-.+.+++++|-||||||+. +|.... ...++|.|--|.||
T Consensus 171 ~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 171 GIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred hhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 3455999999999999987 444333 23466766677766
No 291
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.83 E-value=0.9 Score=52.45 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=41.4
Q ss_pred CeEEEEecCCCcHHHH---HHHHHHh-cCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeeccc
Q 003593 295 KIIYHCGPTNSGKTYN---ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370 (808)
Q Consensus 295 rdvlv~apTGSGKTl~---~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l~ 370 (808)
+.+++.||+|+|||+. +...+.. +.+++|+. ...++.++...+.. +.. . . +..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~~~f~~~~~~~l~~---------~~~-~--~----------f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-SELFTEHLVSAIRS---------GEM-Q--R----------FRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-HHHHHHHHHHHHhc---------chH-H--H----------HHH
Confidence 4688999999999977 2233333 44566654 45565555554432 100 0 0 000
Q ss_pred CCCceeEEEEccchhhhc
Q 003593 371 TDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 371 ~~~lv~~vVIDEAh~i~d 388 (808)
..+.+++++|||+|.+..
T Consensus 199 ~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 199 FYRNVDALFIEDIEVFSG 216 (445)
T ss_pred HcccCCEEEEcchhhhcC
Confidence 011268999999999874
No 292
>PRK09183 transposase/IS protein; Provisional
Probab=87.71 E-value=1 Score=48.07 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=28.1
Q ss_pred hCCCeEEEEecCCCcHHHH--HH-HHHHhcCcEEEEcccHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN--AL-QRFMEAKKGIYCSPLRLLAMEVF 335 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L-~~L~~~~~~lvl~Ptr~La~Qi~ 335 (808)
-.+.+++++||+|+|||+. ++ ..+...+..+...+..+|..++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~ 146 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLS 146 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHH
Confidence 5688999999999999987 22 12233443343445556665554
No 293
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.68 E-value=11 Score=37.31 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.2
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
-.+++.|++|+|||+.
T Consensus 6 mki~ITG~PGvGKtTl 21 (179)
T COG1618 6 MKIFITGRPGVGKTTL 21 (179)
T ss_pred eEEEEeCCCCccHHHH
Confidence 3688999999999987
No 294
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.66 E-value=0.66 Score=49.76 Aligned_cols=18 Identities=50% Similarity=0.641 Sum_probs=15.7
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.+..++++||||||||+.
T Consensus 79 ~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 79 PHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 455799999999999988
No 295
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.55 E-value=0.42 Score=56.77 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.6
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
++-.|.+||.|+|||.+
T Consensus 38 ~hayLf~Gp~GtGKTt~ 54 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSA 54 (559)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578899999999988
No 296
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.53 E-value=0.58 Score=51.55 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=14.0
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
.+++.||+|+|||+.
T Consensus 38 ~lll~Gp~GtGKT~l 52 (337)
T PRK12402 38 HLLVQGPPGSGKTAA 52 (337)
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999988
No 297
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=87.37 E-value=0.57 Score=56.40 Aligned_cols=56 Identities=13% Similarity=-0.030 Sum_probs=43.5
Q ss_pred CCeEEEEecCCCcHHHH-HHHHHHhc-CcEEEEcccHHHHHHHHHHHHHccccccccc
Q 003593 294 RKIIYHCGPTNSGKTYN-ALQRFMEA-KKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (808)
Q Consensus 294 grdvlv~apTGSGKTl~-~L~~L~~~-~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~ 349 (808)
...++++||||||||.. .++.++.. +.+||+=|-.|+..-.....++.|.++-++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfd 281 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLD 281 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 45889999999999999 66667664 4566666999999888887777776665543
No 298
>PRK11823 DNA repair protein RadA; Provisional
Probab=87.37 E-value=2 Score=49.67 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=51.6
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHccccccc-cccccccccccCCeEEEee
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVYCSL-LTGQEKKLVPFSNHIACTV 366 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l-~~g~~~~~~~~~~~i~~t~ 366 (808)
..|..+++.|++|+|||+..++.+. .+.+++|++ +.+-..|+..+...+|....- ....+ ..+..-.
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~Ees~~qi~~ra~rlg~~~~~l~~~~e-------~~l~~i~ 149 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GEESASQIKLRAERLGLPSDNLYLLAE-------TNLEAIL 149 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-ccccHHHHHHHHHHcCCChhcEEEeCC-------CCHHHHH
Confidence 3477899999999999998444332 345778887 345567887777777653211 00000 0000000
Q ss_pred ecccCCCceeEEEEccchhhhc
Q 003593 367 EMVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 367 e~l~~~~lv~~vVIDEAh~i~d 388 (808)
..+.. ...++||||+++.+..
T Consensus 150 ~~i~~-~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 150 ATIEE-EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHh-hCCCEEEEechhhhcc
Confidence 11111 1268999999998754
No 299
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.28 E-value=1.6 Score=49.84 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.4
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
.+++.||+|+|||+.+
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7889999999999883
No 300
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.25 E-value=0.55 Score=54.56 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=13.5
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
.+++.||+|+|||+.
T Consensus 38 ~~Lf~GPpGtGKTTl 52 (472)
T PRK14962 38 AYIFAGPRGTGKTTV 52 (472)
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999988
No 301
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=87.24 E-value=0.42 Score=55.93 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=14.5
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+.+++.||.|+|||..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ 59 (507)
T PRK06645 44 GGYLLTGIRGVGKTTS 59 (507)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3689999999999988
No 302
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.22 E-value=0.76 Score=53.14 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=42.9
Q ss_pred CeEEEEecCCCcHHHH--HH-HHHHh--cCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecc
Q 003593 295 KIIYHCGPTNSGKTYN--AL-QRFME--AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (808)
Q Consensus 295 rdvlv~apTGSGKTl~--~L-~~L~~--~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l 369 (808)
..+++.|++|+|||+. ++ ..+.. .+..++..+...+..++...+.... .... +..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~--------~~~~------------~~~ 201 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH--------KEIE------------QFK 201 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh--------hHHH------------HHH
Confidence 4588999999999976 22 22222 2333344455777777777765410 0000 011
Q ss_pred cCCCceeEEEEccchhhhc
Q 003593 370 STDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 370 ~~~~lv~~vVIDEAh~i~d 388 (808)
..-+.++++||||+|.+..
T Consensus 202 ~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 202 NEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred HHhccCCEEEEeccccccC
Confidence 1112268999999998863
No 303
>PRK10436 hypothetical protein; Provisional
Probab=87.20 E-value=0.65 Score=53.78 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=16.6
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
..+--++++||||||||+.
T Consensus 216 ~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred hcCCeEEEECCCCCChHHH
Confidence 4566899999999999997
No 304
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=87.19 E-value=1.1 Score=54.74 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=38.3
Q ss_pred CCCeEEEEecCCCcHHHHHHH---HHHh-c----CcEEEEcccHHHHHHHHHHHHHc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQ---RFME-A----KKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~---~L~~-~----~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
....++|+|..|||||.+... .|+. . .+.|+++.|+..|.++.+++.+.
T Consensus 14 ~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 14 VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 356788999999999998433 3332 2 26799999999999999999864
No 305
>PRK04328 hypothetical protein; Provisional
Probab=87.16 E-value=1.1 Score=47.63 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=37.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.|..+++.||+|+|||.-+++.+ ..+..++|++ +-+-..++.+.++++|.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 57899999999999998754443 3445677776 555666777788887764
No 306
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=87.06 E-value=1.1 Score=46.60 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=34.2
Q ss_pred CCCeEEEEecCCCcHHHHHHH----HHHhcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQ----RFMEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~----~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.|..+++.||+|+|||+.++. .+..+..++|++ +-+.+.++.+..+.+|..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is-~e~~~~~i~~~~~~~g~~ 73 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT-TEESRESIIRQAAQFGMD 73 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE-ccCCHHHHHHHHHHhCCC
Confidence 588999999999999987433 223344666665 344456666666666644
No 307
>PTZ00293 thymidine kinase; Provisional
Probab=87.02 E-value=0.71 Score=47.63 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccH
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLR 328 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr 328 (808)
.|+..++.||-|||||+..|..+. .+.+++++-|..
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 477889999999999987666554 345677777853
No 308
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=86.97 E-value=0.63 Score=56.24 Aligned_cols=54 Identities=15% Similarity=0.003 Sum_probs=42.0
Q ss_pred CeEEEEecCCCcHHHH-HHHHHHh-cCcEEEEcccHHHHHHHHHHHHHcccccccc
Q 003593 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALGVYCSLL 348 (808)
Q Consensus 295 rdvlv~apTGSGKTl~-~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~ 348 (808)
..++++||||||||.. .++.|+. .+.+||+=|--|+........++.|..+-++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~F 195 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKF 195 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEe
Confidence 4899999999999998 5566665 4566777799999998888777777665443
No 309
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.92 E-value=1 Score=47.99 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=41.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH---hcCcEEEEcccHHHHHHHHHHHHHcccccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM---EAKKGIYCSPLRLLAMEVFDKVNALGVYCS 346 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~---~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~ 346 (808)
.|+.+++.|++|||||+-.++.+. +.+..++.+-+.+...++.+.+..+|....
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~ 78 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLE 78 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHH
Confidence 588999999999999998655554 445445556677888888888888876654
No 310
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=86.86 E-value=0.72 Score=52.31 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=32.4
Q ss_pred hhhHHHhCCCeEEEEecCCCcHHHH---HHHHHHhcC-cEEEEcccHHHHHHHHH
Q 003593 286 FPFARVMKRKIIYHCGPTNSGKTYN---ALQRFMEAK-KGIYCSPLRLLAMEVFD 336 (808)
Q Consensus 286 ~~i~~~l~grdvlv~apTGSGKTl~---~L~~L~~~~-~~lvl~Ptr~La~Qi~~ 336 (808)
.|++.-...+.++++|.||||||.+ .+..+...+ ++||.=|.-+.....++
T Consensus 7 v~l~~~~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 7 VPLPKDSENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp EEE-GGGGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH--
T ss_pred eecccchhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhcC
Confidence 3555567889999999999999987 344444444 55666698777655444
No 311
>PF12846 AAA_10: AAA-like domain
Probab=86.80 E-value=0.67 Score=49.72 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=25.8
Q ss_pred CCeEEEEecCCCcHHHHH---HHHHHhcC-cEEEEcccHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNA---LQRFMEAK-KGIYCSPLRLLAM 332 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~---L~~L~~~~-~~lvl~Ptr~La~ 332 (808)
++.++++|+||||||..+ +..+...+ .++|+=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 357899999999999883 33333444 4555557755544
No 312
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.77 E-value=0.55 Score=56.06 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.9
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
-+|+.||.|+|||.++
T Consensus 40 ayLf~Gp~G~GKtt~A 55 (576)
T PRK14965 40 AFLFTGARGVGKTSTA 55 (576)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999983
No 313
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.63 E-value=0.54 Score=55.97 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.9
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
-+|+.||.|+|||..+
T Consensus 37 a~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 37 AYLFSGPRGCGKTSSA 52 (584)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999983
No 314
>PRK05973 replicative DNA helicase; Provisional
Probab=86.54 E-value=1.3 Score=46.79 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=36.8
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
..|.-+++.|++|+|||+-+++.+. .+.+++|++ +-+-..|+.+++..+|..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS-lEes~~~i~~R~~s~g~d 117 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT-LEYTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-EeCCHHHHHHHHHHcCCC
Confidence 5678899999999999998555433 334566765 333367888888887654
No 315
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=86.46 E-value=2 Score=56.33 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=52.1
Q ss_pred hhHHHhC--CCeEEEEecCCCcHHHH---HHHHHH---h--cCcEEEEcccHHHHHHHHHHHHHcccccccccccccccc
Q 003593 287 PFARVMK--RKIIYHCGPTNSGKTYN---ALQRFM---E--AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356 (808)
Q Consensus 287 ~i~~~l~--grdvlv~apTGSGKTl~---~L~~L~---~--~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~ 356 (808)
++..++. ++.+++.|..|+|||+. ++..+. + +..++.++||---+..+.+ .|+.+.-+..-.....
T Consensus 843 Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e----~Gi~A~TIasfL~~~~ 918 (1623)
T PRK14712 843 ATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS----AGVDAQTLASFLHDTQ 918 (1623)
T ss_pred HHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH----hCchHhhHHHHhcccc
Confidence 5555664 48999999999999998 233322 2 2356778899888777643 3554322111110000
Q ss_pred ccCCeEEEeeecccCCCceeEEEEccchhhhc
Q 003593 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 357 ~~~~~i~~t~e~l~~~~lv~~vVIDEAh~i~d 388 (808)
. ..... + .+....+++|||||=|+..
T Consensus 919 ~--~~~~~--~--~~~~~~~llIVDEASMV~~ 944 (1623)
T PRK14712 919 L--QQRSG--E--TPDFSNTLFLLDESSMVGN 944 (1623)
T ss_pred c--hhhcc--c--CCCCCCcEEEEEccccccH
Confidence 0 00000 0 0111158999999999975
No 316
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=86.34 E-value=1.2 Score=54.78 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=39.3
Q ss_pred hCCCeEEEEecCCCcHHHHHHHH---HHh-c----CcEEEEcccHHHHHHHHHHHHHc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQR---FME-A----KKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~---L~~-~----~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
.....++|+|..|||||.+.... |+. . ...|+|+.|+..|.++.+++.++
T Consensus 15 ~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 15 APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 34568999999999999984333 332 2 36799999999999999999875
No 317
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.29 E-value=0.32 Score=56.59 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=20.0
Q ss_pred CCceeEEEEccchhhhcccchhHHHHHHhhc
Q 003593 372 DEMYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (808)
Q Consensus 372 ~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l 402 (808)
...+.+.||||+||++. ..|...+..|
T Consensus 117 ~~ryKVyiIDEvHMLS~----~afNALLKTL 143 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK----QAFNALLKTL 143 (515)
T ss_pred cccceEEEEecHHhhhH----HHHHHHhccc
Confidence 33489999999999994 3566666555
No 318
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=86.28 E-value=2.6 Score=47.76 Aligned_cols=116 Identities=12% Similarity=0.155 Sum_probs=58.4
Q ss_pred CeEEEEecCCCcHHHHHH----HHHHh---cCcEEEEcccHH-HHHHHHHHHH----Hcccccccccccc--cccccc--
Q 003593 295 KIIYHCGPTNSGKTYNAL----QRFME---AKKGIYCSPLRL-LAMEVFDKVN----ALGVYCSLLTGQE--KKLVPF-- 358 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~L----~~L~~---~~~~lvl~Ptr~-La~Qi~~~l~----~~g~~~~l~~g~~--~~~~~~-- 358 (808)
+-.++.|..|||||.+.. ..++. +...+++.|+.- |...++..+. .+|.......... .-....
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCC
Confidence 346789999999998833 22333 345677778766 5555566555 3344322111111 000000
Q ss_pred CCeEEEe----eecccCCCceeEEEEccchhhhcccchhHHHHHHhhcc--ccc--eeccCCch
Q 003593 359 SNHIACT----VEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLM--ADE--IHLCGDPS 414 (808)
Q Consensus 359 ~~~i~~t----~e~l~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~--~~~--i~l~~s~~ 414 (808)
..++... ++-+.....++++.+|||..+... .|..++..+. ... +.++.+|.
T Consensus 82 ~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 82 KKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPE 141 (396)
T ss_pred eEEEeecccCChhHhhCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcC
Confidence 1111111 112222222789999999999754 4444443333 122 44555553
No 319
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.06 E-value=1.1 Score=52.32 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=41.0
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHh-----cCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFME-----AKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~-----~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
..|+.+++.||+|+|||+-+++.+.. +..++|++- -+-..++.+.+.++|...
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGWDL 76 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCCCH
Confidence 35889999999999999986665543 357888873 467788888888888664
No 320
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.82 E-value=0.65 Score=50.92 Aligned_cols=39 Identities=31% Similarity=0.239 Sum_probs=25.3
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHHhc-CcEEEEcccHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFMEA-KKGIYCSPLRL 329 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~~~-~~~lvl~Ptr~ 329 (808)
+..|..++++||||||||+. +|...... .+.+++-.+.+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~E 182 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTRE 182 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccc
Confidence 45789999999999999987 34433333 23344434333
No 321
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.71 E-value=0.77 Score=46.90 Aligned_cols=15 Identities=40% Similarity=0.725 Sum_probs=13.6
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-++++||||||||+.
T Consensus 3 lilI~GptGSGKTTl 17 (198)
T cd01131 3 LVLVTGPTGSGKSTT 17 (198)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999998
No 322
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=85.67 E-value=1.3 Score=54.48 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=39.3
Q ss_pred hCCCeEEEEecCCCcHHHHHHHH---HHh-----cCcEEEEcccHHHHHHHHHHHHHc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQR---FME-----AKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~---L~~-----~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
.....++|+|..|||||.+.... |+. ....|+|+-|+..|.++.+++.++
T Consensus 20 ~~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 20 APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 34568999999999999984333 332 236799999999999999999775
No 323
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=85.63 E-value=2.2 Score=52.62 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=47.0
Q ss_pred hhcCCCCEEEEe-chhHHHHHHHHHHHh---cC-CeEEE-EcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCC
Q 003593 453 RNVRSGDCVVAF-SRREIFEVKMAIEKH---TN-HHCCV-IYGALPPETRRQQANLFNDQDNEFDVLVASDAV 519 (808)
Q Consensus 453 ~~~~~g~~II~f-srk~~~~l~~~L~~~---~g-~~v~~-lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~ 519 (808)
......++.|+| |+.=+.+.+..|.+. .+ ..+.+ |||.|+.++++..+++|. +|..+|||+|+.+
T Consensus 121 ~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~--~gdfdIlitTs~F 191 (1187)
T COG1110 121 LAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIE--SGDFDILITTSQF 191 (1187)
T ss_pred HHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHh--cCCccEEEEeHHH
Confidence 334445666666 666666666666542 12 44433 999999999999999995 5999999999865
No 324
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=85.55 E-value=1.1 Score=50.57 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=50.1
Q ss_pred hCCCeEEEEecCCCcHHHH--HHHHHHhc-CcEEEE-cccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeee
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQRFMEA-KKGIYC-SPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVE 367 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~~L~~~-~~~lvl-~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e 367 (808)
-.|..|++.|+||+||++. .+..+... ..+.+| +.--++...-.+. .-+|..-+.++|...+... -.+
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~-eLFG~~kGaftGa~~~k~G-------lfe 170 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA-ELFGHEKGAFTGAQGGKAG-------LFE 170 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH-HHhccccceeecccCCcCc-------hhe
Confidence 5789999999999999998 34444333 233222 2332332222221 1567777777874443211 112
Q ss_pred cccCCCceeEEEEccchhhhcc
Q 003593 368 MVSTDEMYDVAVIDEIQMMSDA 389 (808)
Q Consensus 368 ~l~~~~lv~~vVIDEAh~i~d~ 389 (808)
.+.- ..+.+||+|.+.-.
T Consensus 171 ~A~G----GtLfLDEI~~LP~~ 188 (403)
T COG1221 171 QANG----GTLFLDEIHRLPPE 188 (403)
T ss_pred ecCC----CEEehhhhhhCCHh
Confidence 2221 58899999999743
No 325
>PHA00350 putative assembly protein
Probab=85.55 E-value=3 Score=47.18 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=19.5
Q ss_pred eEEEEecCCCcHHHHHHH----HHHhcCcEEE
Q 003593 296 IIYHCGPTNSGKTYNALQ----RFMEAKKGIY 323 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~----~L~~~~~~lv 323 (808)
..++.|..|||||+.++. +.+..|+.||
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~ 34 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVI 34 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEE
Confidence 467899999999998433 3345566554
No 326
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=85.49 E-value=0.22 Score=50.01 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=23.7
Q ss_pred EEEecCCCcHHHHH---HHHHHhcC--cEEEEcccHHHHHHHHHHHHH
Q 003593 298 YHCGPTNSGKTYNA---LQRFMEAK--KGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 298 lv~apTGSGKTl~~---L~~L~~~~--~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
++.|+-|-|||.+. +..+...+ .++|.+|..+-++.+++.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~ 48 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEK 48 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHh
Confidence 57899999999982 22233332 578888999988888776654
No 327
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.49 E-value=0.71 Score=53.91 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=13.2
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-.++.||.|+|||++
T Consensus 40 ayLf~Gp~G~GKTtl 54 (486)
T PRK14953 40 AYIFAGPRGTGKTTI 54 (486)
T ss_pred EEEEECCCCCCHHHH
Confidence 357899999999988
No 328
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.21 E-value=0.68 Score=55.39 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.6
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+++.||.|+|||+.
T Consensus 40 a~Lf~Gp~GvGKTtl 54 (618)
T PRK14951 40 AYLFTGTRGVGKTTV 54 (618)
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999998
No 329
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=85.16 E-value=2 Score=58.31 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=37.6
Q ss_pred hhHHHhC--CCeEEEEecCCCcHHHH--HHHHHHh--cCcEEEEcccHHHHHHHHHHH
Q 003593 287 PFARVMK--RKIIYHCGPTNSGKTYN--ALQRFME--AKKGIYCSPLRLLAMEVFDKV 338 (808)
Q Consensus 287 ~i~~~l~--grdvlv~apTGSGKTl~--~L~~L~~--~~~~lvl~Ptr~La~Qi~~~l 338 (808)
++..++. .+.+++.|+.|+|||+. .+..+.+ +..+++++||---+..+.+..
T Consensus 437 Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~ 494 (1960)
T TIGR02760 437 AVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI 494 (1960)
T ss_pred HHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh
Confidence 4545555 47899999999999998 4444443 446788889998877776654
No 330
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=85.11 E-value=0.89 Score=54.50 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=41.5
Q ss_pred CeEEEEecCCCcHHHH-HHHHHHh-cCcEEEEcccHHHHHHHHHHHHHcc-cccccc
Q 003593 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALG-VYCSLL 348 (808)
Q Consensus 295 rdvlv~apTGSGKTl~-~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g-~~~~l~ 348 (808)
..++++||||||||.. .++.++. ++.+||+=|--|+..-....-++.| .++-++
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vf 268 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVL 268 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEE
Confidence 5899999999999998 5666666 4566677799999888877777666 555443
No 331
>PF02689 Herpes_Helicase: Helicase; InterPro: IPR003840 This entry consists of DNA helicases from a number of different organisms.; GO: 0004386 helicase activity, 0005524 ATP binding
Probab=85.07 E-value=2.4 Score=50.87 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=38.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHhcCcEEEEcccHHHHHHHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
=...++.|--|+|||.| ++.|.+.-.+||-..|+.-|+.+...|+
T Consensus 59 F~~ylITGtAGaGKSts-Iq~L~~~ldCviTGaT~vAaQNls~~L~ 103 (818)
T PF02689_consen 59 FSVYLITGTAGAGKSTS-IQTLAENLDCVITGATVVAAQNLSSKLS 103 (818)
T ss_pred eEEEEEeccCCCCccch-HHHHHhhhCeEEecchhhhHhHHHHHhc
Confidence 34678999999999998 5666677789999999999999999987
No 332
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.97 E-value=1.5 Score=53.71 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.3
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
.+++.|+||+|||++
T Consensus 783 vLYIyG~PGTGKTAT 797 (1164)
T PTZ00112 783 ILYISGMPGTGKTAT 797 (1164)
T ss_pred eEEEECCCCCCHHHH
Confidence 356999999999999
No 333
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.94 E-value=1.9 Score=48.78 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCcHHHHH--H-HHHHh-cCcE-EEEc-ccHHHHHHHHHHH-HHccccccccccccccccccCCeEEEe
Q 003593 293 KRKIIYHCGPTNSGKTYNA--L-QRFME-AKKG-IYCS-PLRLLAMEVFDKV-NALGVYCSLLTGQEKKLVPFSNHIACT 365 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~--L-~~L~~-~~~~-lvl~-Ptr~La~Qi~~~l-~~~g~~~~l~~g~~~~~~~~~~~i~~t 365 (808)
..+.++++||||+|||+.+ | ..+.. +.++ ++-+ |.|.-+.++.... ...|+++.. ..... .+.-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v--~~d~~------~L~~a 311 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDEA------AMTRA 311 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEe--cCCHH------HHHHH
Confidence 4578999999999999882 2 12333 3344 4444 7775555554443 333433221 11000 01011
Q ss_pred eecccCCCceeEEEEccchhhh
Q 003593 366 VEMVSTDEMYDVAVIDEIQMMS 387 (808)
Q Consensus 366 ~e~l~~~~lv~~vVIDEAh~i~ 387 (808)
+..+.....+++|+||-+=+..
T Consensus 312 L~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 312 LTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHhccCCCEEEEeCccccC
Confidence 1222221137899999886654
No 334
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.93 E-value=1.7 Score=48.98 Aligned_cols=55 Identities=27% Similarity=0.366 Sum_probs=35.5
Q ss_pred hCCCeEEEEecCCCcHHHH----HHHHH--HhcC-cEEEEc-ccHHHHHHHHHHHHH-cccccc
Q 003593 292 MKRKIIYHCGPTNSGKTYN----ALQRF--MEAK-KGIYCS-PLRLLAMEVFDKVNA-LGVYCS 346 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~----~L~~L--~~~~-~~lvl~-Ptr~La~Qi~~~l~~-~g~~~~ 346 (808)
.+++.+.++||||-|||+. +.... .... .+||-. -.|.=|.+|.....+ +|+++.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 4599999999999999988 12222 1222 345555 677777777666654 355543
No 335
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.80 E-value=2.9 Score=55.57 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=52.3
Q ss_pred hhhHHHhC--CCeEEEEecCCCcHHHH--HHHHHHh------cCcEEEEcccHHHHHHHHHHHHHccccccccccccccc
Q 003593 286 FPFARVMK--RKIIYHCGPTNSGKTYN--ALQRFME------AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKL 355 (808)
Q Consensus 286 ~~i~~~l~--grdvlv~apTGSGKTl~--~L~~L~~------~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~ 355 (808)
.++..++. .+.+++.|..|+|||+. .+..++. +..++.++||---|..+.+ .|+.+.-+..-....
T Consensus 974 ~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~Gi~A~TI~s~L~~~ 1049 (1747)
T PRK13709 974 AATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----AGVDAQTLASFLHDT 1049 (1747)
T ss_pred HHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----cCcchhhHHHHhccc
Confidence 35555666 46899999999999998 3333321 2356778999888776543 455433222111000
Q ss_pred cccCCeEEEeeecccCCCceeEEEEccchhhhc
Q 003593 356 VPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 356 ~~~~~~i~~t~e~l~~~~lv~~vVIDEAh~i~d 388 (808)
.. .....+ .+...-+++|||||=|+..
T Consensus 1050 ~~----~~~~~~--~~~~~~~llIVDEaSMv~~ 1076 (1747)
T PRK13709 1050 QL----QQRSGE--TPDFSNTLFLLDESSMVGN 1076 (1747)
T ss_pred cc----cccccc--CCCCCCcEEEEEccccccH
Confidence 00 000000 0101148999999999974
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.75 E-value=1.8 Score=49.34 Aligned_cols=52 Identities=31% Similarity=0.558 Sum_probs=33.9
Q ss_pred hCCCeEEEEecCCCcHHHHH--HH--HHHh-cCcEEEEc--ccHHHHHHHHHHHHH-ccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNA--LQ--RFME-AKKGIYCS--PLRLLAMEVFDKVNA-LGV 343 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~--L~--~L~~-~~~~lvl~--Ptr~La~Qi~~~l~~-~g~ 343 (808)
..++.++++||||+|||+.+ |. .... +.++.++. +.|..+.++..+... .|+
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgv 280 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGM 280 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCC
Confidence 34667899999999999982 22 1123 33454444 888888887776643 344
No 337
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=84.73 E-value=0.82 Score=52.25 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=33.4
Q ss_pred hhHHHhCCCeEEEEecCCCcHHHHH---HHHHH-hcCcEEEEcccHHHHHH
Q 003593 287 PFARVMKRKIIYHCGPTNSGKTYNA---LQRFM-EAKKGIYCSPLRLLAME 333 (808)
Q Consensus 287 ~i~~~l~grdvlv~apTGSGKTl~~---L~~L~-~~~~~lvl~Ptr~La~Q 333 (808)
+++.-...+.++++|+||||||..+ +..+. .+.++||+=|..++...
T Consensus 35 ~~~~~~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 35 PFPKDAEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSK 85 (410)
T ss_pred eCCcchhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHh
Confidence 4555567889999999999999873 22222 34567777799887643
No 338
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=84.67 E-value=1.3 Score=53.39 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=45.4
Q ss_pred HHHHHHHCCCCCCcch--hhhHHHhCCCeEEEEecCCCcHHHH---HHHHHHh-cCcEEEEcccHHHHHHHH
Q 003593 270 FRAMIESADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYN---ALQRFME-AKKGIYCSPLRLLAMEVF 335 (808)
Q Consensus 270 i~~~l~~~g~~~pt~~--~~i~~~l~grdvlv~apTGSGKTl~---~L~~L~~-~~~~lvl~Ptr~La~Qi~ 335 (808)
+.+.+++.|-..+..+ .|++.-...+.++++|-||||||.+ .|..+.. +.++||.=|.-+.+..-+
T Consensus 159 l~k~lk~~~~~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i~~LL~~ir~RGdrAIIyD~~GeFv~~FY 230 (732)
T PRK13700 159 VARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYY 230 (732)
T ss_pred HHHHHHhcCCCCCeeEccccCCcchhhcceEEeCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHhc
Confidence 3455666666555554 6777778999999999999999998 3444433 446666668766655433
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=84.66 E-value=1.9 Score=46.46 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCCeEEEEecCCCcHHHHH---HHHHHhc-CcEEEEc--ccHHHHHHHHHHH-HHcc
Q 003593 293 KRKIIYHCGPTNSGKTYNA---LQRFMEA-KKGIYCS--PLRLLAMEVFDKV-NALG 342 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~---L~~L~~~-~~~lvl~--Ptr~La~Qi~~~l-~~~g 342 (808)
..+.++++||||+|||+.+ ...+... .+++++. +.|.-+.++...+ ...|
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 3568888999999999872 1223333 4555554 6777766555544 3444
No 340
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=84.64 E-value=0.94 Score=54.65 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=54.8
Q ss_pred CCeeEEEECCCCccccccC-ccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCC-----CC-----CCceEEEEEecC
Q 003593 508 NEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG-----SI-----YPDGLTTTLNLD 576 (808)
Q Consensus 508 g~~~ILVATda~~~GIDip-V~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G-----~~-----~~~G~~i~l~~~ 576 (808)
...+.|.+--++-.|.|=| |=.++-... ..|..+=.|.+||.-|-- .. +-.-....++..
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~---------S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~ 552 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRS---------SGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNE 552 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecC---------CCcchHHHHHhccceeeeeccccceecccccccceEEEEecc
Confidence 5689999999999999998 777766665 568889999999999942 10 112233445677
Q ss_pred CHHHHHHHhcCCchhh
Q 003593 577 DLDYLIECLKQPFEVV 592 (808)
Q Consensus 577 d~~~l~~~l~~~~~~~ 592 (808)
+...+.+.|.+.+...
T Consensus 553 sek~Fv~~LqkEI~~~ 568 (985)
T COG3587 553 SEKDFVKALQKEINDE 568 (985)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 8888888776654433
No 341
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.61 E-value=1.9 Score=49.40 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=31.9
Q ss_pred hCCCeEEEEecCCCcHHHHH--H-HHHH--hc-CcEEEEc--ccHHHHHHHHHHHH-Hcccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNA--L-QRFM--EA-KKGIYCS--PLRLLAMEVFDKVN-ALGVY 344 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~--L-~~L~--~~-~~~lvl~--Ptr~La~Qi~~~l~-~~g~~ 344 (808)
..++.++++||||+|||+.+ | ..+. .+ .++.++. |.|.-+.++...+. ..+++
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp 280 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP 280 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc
Confidence 45789999999999999872 2 2222 33 3444443 77765555544433 33443
No 342
>PRK05580 primosome assembly protein PriA; Validated
Probab=84.60 E-value=3.3 Score=50.52 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=57.7
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCC
Q 003593 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (808)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~ 535 (808)
.++|.+ ++.-+.++...+.+..|..+..+||+++..+|.++..+... |..+|+|+|..+-. +.++ +.+||....
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~--g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR--GEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc--CCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 455555 56778888888888778899999999999999999988854 89999999974322 4453 788887664
No 343
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.53 E-value=1.8 Score=47.74 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCCeEEEEecCCCcHHHHH--HHH-HH-hcCcEEEEc--ccHHHHHHHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYNA--LQR-FM-EAKKGIYCS--PLRLLAMEVFDKV 338 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~--L~~-L~-~~~~~lvl~--Ptr~La~Qi~~~l 338 (808)
.++.++++||+|+|||+.+ |.. +. .+++++++. +.|..+.++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~ 164 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVW 164 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHH
Confidence 5778999999999999882 222 22 344565554 5577665554443
No 344
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.37 E-value=0.63 Score=54.92 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.5
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+|+.||.|+|||+.
T Consensus 40 a~Lf~Gp~G~GKTt~ 54 (527)
T PRK14969 40 AYLFTGTRGVGKTTL 54 (527)
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999988
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.35 E-value=1.3 Score=49.26 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=16.8
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
..+..++++||||||||+.
T Consensus 120 ~~~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTT 138 (343)
T ss_pred hcCcEEEEECCCCCCHHHH
Confidence 3567899999999999998
No 346
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=84.16 E-value=2.6 Score=50.26 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=41.8
Q ss_pred eEEEEecCCCcHHHH--HH-HHHHh--cCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeeccc
Q 003593 296 IIYHCGPTNSGKTYN--AL-QRFME--AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMVS 370 (808)
Q Consensus 296 dvlv~apTGSGKTl~--~L-~~L~~--~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l~ 370 (808)
.+++.|++|+|||+. ++ ..+.. .+..++..+..+++.+....+..... .... .
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~-------~~f~---------------~ 373 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKG-------DSFR---------------R 373 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccH-------HHHH---------------H
Confidence 488999999999976 22 22322 23344455666777776655543100 0000 0
Q ss_pred CCCceeEEEEccchhhhc
Q 003593 371 TDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 371 ~~~lv~~vVIDEAh~i~d 388 (808)
.-+.+++||||++|.+..
T Consensus 374 ~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 374 RYREMDILLVDDIQFLED 391 (617)
T ss_pred HhhcCCEEEEehhccccC
Confidence 011268999999999964
No 347
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.16 E-value=3 Score=49.00 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=56.5
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeCC
Q 003593 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSL 535 (808)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~~ 535 (808)
.++|.+ +..-+.+++..+.+..|..+.++||+++..+|.++..+... |+.+|+|+|-.+-. +.++ +..||....
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCEEECChHHHc-CcccCCCEEEEECC
Confidence 445555 45677888888887778899999999999999999888854 89999999975332 3343 788886654
No 348
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=84.11 E-value=1.5 Score=43.74 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=34.1
Q ss_pred EEEEecCCCcHHHHHHHHHHh-cCcEEEEcccHHHHHHHHHHHHH
Q 003593 297 IYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 297 vlv~apTGSGKTl~~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
+++.|++|||||.-+.+.+.. +.+++|++-...+-.++.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHH
Confidence 688999999999987666654 45889998777776667666655
No 349
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=83.99 E-value=0.68 Score=55.69 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=14.8
Q ss_pred CeEEEEecCCCcHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~ 311 (808)
+.+|++||.|+|||+.+
T Consensus 39 Ha~Lf~GP~GvGKTTlA 55 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIA 55 (709)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46899999999999883
No 350
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=83.84 E-value=1.1 Score=53.37 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.7
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.+-.++++||||||||+.
T Consensus 315 ~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 456789999999999988
No 351
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=83.81 E-value=1.5 Score=44.05 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccH
Q 003593 294 RKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLR 328 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr 328 (808)
|+-.++.||-+||||...+..+. .+.+++++-|..
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 45678899999999999766553 345677777753
No 352
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.76 E-value=2 Score=48.40 Aligned_cols=83 Identities=23% Similarity=0.266 Sum_probs=44.0
Q ss_pred hCCCeEEEEecCCCcHHHHH--HHH--HHh-cC-cEEEE-c-ccHHHHHHHHHHHHH-ccccccccc-cccccccccCCe
Q 003593 292 MKRKIIYHCGPTNSGKTYNA--LQR--FME-AK-KGIYC-S-PLRLLAMEVFDKVNA-LGVYCSLLT-GQEKKLVPFSNH 361 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~--L~~--L~~-~~-~~lvl-~-Ptr~La~Qi~~~l~~-~g~~~~l~~-g~~~~~~~~~~~ 361 (808)
-.|..++++||||+|||+.+ |.. +.. +. ++.++ . +.|.-+.++...+.+ +|++..... +....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~------- 207 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ------- 207 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH-------
Confidence 46889999999999999982 221 223 22 33333 3 445556655555443 344332211 11100
Q ss_pred EEEeeecccCCCceeEEEEccchhh
Q 003593 362 IACTVEMVSTDEMYDVAVIDEIQMM 386 (808)
Q Consensus 362 i~~t~e~l~~~~lv~~vVIDEAh~i 386 (808)
..+......++|+||.+-+.
T Consensus 208 -----~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 -----LALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred -----HHHHHhcCCCEEEEcCCCCC
Confidence 01111112689999999655
No 353
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=83.68 E-value=2.4 Score=51.90 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.4
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
..+++.||+|+|||+.
T Consensus 53 ~slLL~GPpGtGKTTL 68 (725)
T PRK13341 53 GSLILYGPPGVGKTTL 68 (725)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3789999999999987
No 354
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.61 E-value=1.1 Score=53.60 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=14.2
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+.+|+.||.|+|||+.
T Consensus 39 ~a~Lf~Gp~G~GKTtl 54 (585)
T PRK14950 39 HAYLFTGPRGVGKTST 54 (585)
T ss_pred eEEEEECCCCCCHHHH
Confidence 4568999999999998
No 355
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=83.61 E-value=2.2 Score=45.75 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.5
Q ss_pred CeEEEEecCCCcHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~ 311 (808)
..++..||+|-|||+.+
T Consensus 53 DHvLl~GPPGlGKTTLA 69 (332)
T COG2255 53 DHVLLFGPPGLGKTTLA 69 (332)
T ss_pred CeEEeeCCCCCcHHHHH
Confidence 36899999999999863
No 356
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=83.55 E-value=1.1 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.5
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHh
Q 003593 294 RKIIYHCGPTNSGKTYNALQRFME 317 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~~L~~ 317 (808)
++.++++||||||||..++.-...
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 457899999999999876654333
No 357
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.38 E-value=2.6 Score=49.47 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=13.6
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+++.||.|+|||+.
T Consensus 38 a~Lf~GppGtGKTTl 52 (504)
T PRK14963 38 AYLFSGPRGVGKTTT 52 (504)
T ss_pred EEEEECCCCCCHHHH
Confidence 469999999999998
No 358
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=83.37 E-value=0.8 Score=55.02 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=13.1
Q ss_pred EEEEecCCCcHHHH
Q 003593 297 IYHCGPTNSGKTYN 310 (808)
Q Consensus 297 vlv~apTGSGKTl~ 310 (808)
+|+.||.|+|||+.
T Consensus 41 yLf~Gp~GvGKTTl 54 (647)
T PRK07994 41 YLFSGTRGVGKTTI 54 (647)
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999998
No 359
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=83.36 E-value=2.2 Score=44.66 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
.|..+++.|++|+|||+-+.+.+ ..+.+++|++= .+-..++.+.+.++|...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQMESVKIDI 79 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHHHHHCCCCh
Confidence 47789999999999998744433 33456666653 344466777777777553
No 360
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.27 E-value=2.3 Score=53.44 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=25.5
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHHhcCcEEEEc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCS 325 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~~~~~~lvl~ 325 (808)
...+.+++.||.|+|||+...+.+...+.+++++
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~ 63 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYS 63 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEe
Confidence 4567899999999999999766665544555553
No 361
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=83.18 E-value=2.2 Score=51.86 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=38.4
Q ss_pred CCCeEEEEecCCCcHHHHHHHH---HHhc-----CcEEEEcccHHHHHHHHHHHHHc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQR---FMEA-----KKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~---L~~~-----~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
....++|+|..|||||.+.+.. ++.. ...++|+.|+..|.++.+++.+.
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4568999999999999984433 3321 35688889999999999999764
No 362
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=83.08 E-value=3.1 Score=45.31 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=14.2
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
-+++.||.|+|||..+
T Consensus 26 alL~~Gp~G~Gktt~a 41 (325)
T COG0470 26 ALLFYGPPGVGKTTAA 41 (325)
T ss_pred eeeeeCCCCCCHHHHH
Confidence 4899999999999983
No 363
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=83.02 E-value=1.8 Score=45.11 Aligned_cols=49 Identities=10% Similarity=-0.032 Sum_probs=34.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH---HhcC-cEEEEcccHHHHHHHHHHHHHc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF---MEAK-KGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L---~~~~-~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
+|++.+..+-.|.|||.+++|-+ +..+ +-+.+.=.++|..|..+.+.+.
T Consensus 40 ~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 40 SGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred CCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 57899999999999999955433 3343 3333334456889988888753
No 364
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.01 E-value=2.4 Score=44.27 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=30.6
Q ss_pred hCCCeEEEEecCCCcHHHHHHHH----HHh-cCcEEEEc---ccHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQR----FME-AKKGIYCS---PLRLLAMEVF 335 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~----L~~-~~~~lvl~---Ptr~La~Qi~ 335 (808)
..|.-+++.|+||+|||..+++. +.. +..++|++ |..+++..+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~ 62 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLL 62 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHH
Confidence 45889999999999999874332 233 55778877 5555555443
No 365
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=82.97 E-value=7 Score=46.80 Aligned_cols=127 Identities=17% Similarity=0.228 Sum_probs=73.2
Q ss_pred CchHHHHHHHHHHHCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHHH--HHH-HH---hcCcEEEEcccHHHHHHHHH
Q 003593 263 FPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNA--LQR-FM---EAKKGIYCSPLRLLAMEVFD 336 (808)
Q Consensus 263 fp~~l~~i~~~l~~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~~--L~~-L~---~~~~~lvl~Ptr~La~Qi~~ 336 (808)
.|+.-+++.+.+ +.=|.-|.--..+......|-.+...|==.|||... +.+ ++ .+-.++|.+|.+..++.+++
T Consensus 224 lp~~a~r~~~~l-k~~Fdi~~~s~~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~ 302 (738)
T PHA03368 224 LGDHAERVERFL-RTVFNTPLFSDAAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFE 302 (738)
T ss_pred cHHHHHHHHHHH-HHHcCCccccHHHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHH
Confidence 344444444444 222333332234445578888899999999999872 222 22 45678999999999999999
Q ss_pred HHHHccc------cccccccccccccccCCeEEEeeecccC-------CCceeEEEEccchhhhcccc
Q 003593 337 KVNALGV------YCSLLTGQEKKLVPFSNHIACTVEMVST-------DEMYDVAVIDEIQMMSDACR 391 (808)
Q Consensus 337 ~l~~~g~------~~~l~~g~~~~~~~~~~~i~~t~e~l~~-------~~lv~~vVIDEAh~i~d~~~ 391 (808)
++...-. .+..+.|+.. ......-...++.+.+. +..++++|||||+.+.+..+
T Consensus 303 eI~~~le~~f~~~~v~~vkGe~I-~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~al 369 (738)
T PHA03368 303 EIGARLRQWFGASRVDHVKGETI-SFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPDAV 369 (738)
T ss_pred HHHHHHhhhcchhheeeecCcEE-EEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHHHH
Confidence 9887411 1222233211 00111110113444411 22399999999999987533
No 366
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=82.96 E-value=2.3 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHhCCCeEEEEecCCCcHHHH
Q 003593 290 RVMKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 290 ~~l~grdvlv~apTGSGKTl~ 310 (808)
-+-.+.+++..||+|+|||+.
T Consensus 205 fve~~~Nli~lGp~GTGKThl 225 (449)
T TIGR02688 205 LVEPNYNLIELGPKGTGKSYI 225 (449)
T ss_pred HHhcCCcEEEECCCCCCHHHH
Confidence 346788999999999999976
No 367
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.91 E-value=1.5 Score=48.10 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=34.6
Q ss_pred CCCCCCcch-hhhHHHhCCCeEEEEecCCCcHHHH--HHHHHHh-cCcEEEEcccHHH
Q 003593 277 ADLTKPHTW-FPFARVMKRKIIYHCGPTNSGKTYN--ALQRFME-AKKGIYCSPLRLL 330 (808)
Q Consensus 277 ~g~~~pt~~-~~i~~~l~grdvlv~apTGSGKTl~--~L~~L~~-~~~~lvl~Ptr~L 330 (808)
.|.-.+..+ +-+..+..+++++++|+||||||+. ++..++. ..+.+.+-=|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 444444442 4445568899999999999999988 3333332 3455555555554
No 368
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=82.87 E-value=3 Score=49.42 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=69.7
Q ss_pred CCCeEEEEecCCCcHHHH---HHHHHHhc----CcEEEEcccHHHHHHHHHHHHHccc--ccc-cccccccccc------
Q 003593 293 KRKIIYHCGPTNSGKTYN---ALQRFMEA----KKGIYCSPLRLLAMEVFDKVNALGV--YCS-LLTGQEKKLV------ 356 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~---~L~~L~~~----~~~lvl~Ptr~La~Qi~~~l~~~g~--~~~-l~~g~~~~~~------ 356 (808)
+|-+-|+.-.-|-|||.+ +|..|.+. |.-|||+|--.| ..+++++..+.- .|. ..++...+.+
T Consensus 585 qGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~ 663 (1185)
T KOG0388|consen 585 QGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLPSFKVLPYWGSPSERKILRKFWN 663 (1185)
T ss_pred ccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCccceeecCcCChhhhHHHHHhcc
Confidence 566788888999999998 45555553 466899998766 445566666532 222 2333222211
Q ss_pred -------ccCCeEEE-eeecccCCC------ceeEEEEccchhhhcccchhHHHHHHhhccccceeccCCc
Q 003593 357 -------PFSNHIAC-TVEMVSTDE------MYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDP 413 (808)
Q Consensus 357 -------~~~~~i~~-t~e~l~~~~------lv~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~~i~l~~s~ 413 (808)
....++++ +..++-... .+.+.|+|||+.+-.. -..-|...+.--...+..++++|
T Consensus 664 rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSS-sS~RWKtLLsF~cRNRLLLTGTP 733 (1185)
T KOG0388|consen 664 RKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSS-SSSRWKTLLSFKCRNRLLLTGTP 733 (1185)
T ss_pred hhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhh-hhhHHHHHhhhhccceeeecCCc
Confidence 12234444 344443221 1789999999999542 23345555544444566667776
No 369
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=82.79 E-value=1.2 Score=53.95 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHCCCCCCcchh------hhHHHhCCCeEEEEecCCCcHHHH-HHHHHHh-cCcEEEEcccHHHHHHHHHHHHHcc
Q 003593 274 IESADLTKPHTWF------PFARVMKRKIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNALG 342 (808)
Q Consensus 274 l~~~g~~~pt~~~------~i~~~l~grdvlv~apTGSGKTl~-~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~g 342 (808)
++++|+..+..++ ...+.-....++++||||||||.. .++.|+. .+.+||+=|--||........++.|
T Consensus 118 i~k~gl~~~~GvilG~~~~~~Lr~~g~~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G 194 (663)
T PRK13876 118 IRAAGLLGPDGVVLGRHDRDYLRHDGPEHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG 194 (663)
T ss_pred HHhcCCCCCCcEEEeeeCCcceeccCCceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC
Confidence 4567877776541 111112346899999999999998 5666665 4566777799999888777766655
No 370
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.77 E-value=0.94 Score=53.46 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.5
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+|+.||.|+|||+.
T Consensus 40 a~Lf~Gp~GvGKTTl 54 (546)
T PRK14957 40 AYLFTGTRGVGKTTL 54 (546)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999988
No 371
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=82.72 E-value=1.2 Score=52.90 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.8
Q ss_pred CeEEEEecCCCcHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~ 311 (808)
+-+|+.||.|+|||..+
T Consensus 39 hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA 55 (605)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999883
No 372
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=82.52 E-value=2.3 Score=44.54 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=35.9
Q ss_pred hCCCeEEEEecCCCcHHHHHHHH---HH-hcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQR---FM-EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~---L~-~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
..|..+++.||+|+|||+.+++. +. .+.+++|++ +-+-..+..+.+.++|..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~-~e~~~~~~~~~~~~~g~~ 77 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS-TQLTTTEFIKQMMSLGYD 77 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-CCCCHHHHHHHHHHhCCc
Confidence 45889999999999999884443 32 345778887 444446666666666654
No 373
>PRK10867 signal recognition particle protein; Provisional
Probab=82.42 E-value=2.3 Score=48.86 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCeEEEEecCCCcHHHHH---HHHHHh--cCcEEEEc--ccHHHHHHHHHHHH-Hcccc
Q 003593 294 RKIIYHCGPTNSGKTYNA---LQRFME--AKKGIYCS--PLRLLAMEVFDKVN-ALGVY 344 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~---L~~L~~--~~~~lvl~--Ptr~La~Qi~~~l~-~~g~~ 344 (808)
...++++|++|+|||+.+ ...+.. +.++++++ +.|..+.++...+. ..|++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 357889999999999872 222333 34555554 88888776665543 33433
No 374
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.27 E-value=1.1 Score=52.28 Aligned_cols=17 Identities=53% Similarity=0.690 Sum_probs=14.8
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
+.-++++||||||||+.
T Consensus 242 ~GlilitGptGSGKTTt 258 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTT 258 (486)
T ss_pred CCEEEEEcCCCCCHHHH
Confidence 34689999999999998
No 375
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=82.19 E-value=1.4 Score=45.32 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=18.6
Q ss_pred eEEEEecCCCcHHHHHHHHHHhcCcEEEEc
Q 003593 296 IIYHCGPTNSGKTYNALQRFMEAKKGIYCS 325 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~~L~~~~~~lvl~ 325 (808)
..+++||||+|||..++.....-+-.||+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 568899999999988665444444444433
No 376
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=82.12 E-value=2.5 Score=43.87 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=35.9
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.|..+++.|++|+|||..+++.+ ..+..++|++- .+-..++.+++..+|..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGWD 69 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 47889999999999998744433 33446677653 34567888888777644
No 377
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=2.9 Score=49.96 Aligned_cols=89 Identities=27% Similarity=0.300 Sum_probs=48.2
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCe----EEEee
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNH----IACTV 366 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~----i~~t~ 366 (808)
-+.|-.++++||+|-|||- |+..|++.+.+.-+..++ |..........| +.+-|
T Consensus 347 ~~kGpILcLVGPPGVGKTS--------------------LgkSIA~al~RkfvR~sL--GGvrDEAEIRGHRRTYIGamP 404 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTS--------------------LGKSIAKALGRKFVRISL--GGVRDEAEIRGHRRTYIGAMP 404 (782)
T ss_pred cCCCcEEEEECCCCCCchh--------------------HHHHHHHHhCCCEEEEec--CccccHHHhccccccccccCC
Confidence 3677899999999999994 566666666554333333 332221111111 11111
Q ss_pred ec-----ccCCCceeEEEEccchhhhcccchhHHHHHHhhc
Q 003593 367 EM-----VSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGL 402 (808)
Q Consensus 367 e~-----l~~~~lv~~vVIDEAh~i~d~~~g~~~~~~l~~l 402 (808)
.. -.-+..=-++++||+|.|+...+|. ...+++.+
T Consensus 405 GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGD-PaSALLEV 444 (782)
T COG0466 405 GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGD-PASALLEV 444 (782)
T ss_pred hHHHHHHHHhCCcCCeEEeechhhccCCCCCC-hHHHHHhh
Confidence 11 0111113589999999998764443 33444443
No 378
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.75 E-value=2.5 Score=46.39 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=45.1
Q ss_pred CCCeEEEEecCCCcHHHH---HHHHHHhcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeecc
Q 003593 293 KRKIIYHCGPTNSGKTYN---ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEMV 369 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~---~L~~L~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~l 369 (808)
.++.+++.||+|+|||+. +...+...+..++.+..-+|+.++...+.. +.. .+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~---------~~~-------------~~~l 212 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISD---------GSV-------------KEKI 212 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhc---------CcH-------------HHHH
Confidence 467899999999999987 333444555444333334666666554422 100 0111
Q ss_pred cCCCceeEEEEccchhhhcccch
Q 003593 370 STDEMYDVAVIDEIQMMSDACRG 392 (808)
Q Consensus 370 ~~~~lv~~vVIDEAh~i~d~~~g 392 (808)
..-..++++||||...-.-..|.
T Consensus 213 ~~l~~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 213 DAVKEAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred HHhcCCCEEEEecCCCccccHHH
Confidence 11123799999999765433344
No 379
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.62 E-value=5.9 Score=48.42 Aligned_cols=76 Identities=12% Similarity=0.189 Sum_probs=55.2
Q ss_pred EEEEe-chhHHHHHHHHHHH---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCC-CccccccC-ccEEEEe
Q 003593 460 CVVAF-SRREIFEVKMAIEK---HTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDA-VGMGLNLN-IRRVVFY 533 (808)
Q Consensus 460 ~II~f-srk~~~~l~~~L~~---~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda-~~~GIDip-V~~VI~~ 533 (808)
++|.. ++.=+.+.+..+.+ ..|.++..+||+++..+|..+++...+ |+.+|+|+|.. +...+.++ +.+||.-
T Consensus 313 ~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 313 AALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--GEADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEEchHHHhcccchhcccceEEEe
Confidence 44444 45445555554443 347899999999999999999999964 99999999974 44456675 8888876
Q ss_pred CCcc
Q 003593 534 SLSK 537 (808)
Q Consensus 534 ~~~K 537 (808)
...+
T Consensus 391 E~Hr 394 (681)
T PRK10917 391 EQHR 394 (681)
T ss_pred chhh
Confidence 5533
No 380
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=81.54 E-value=1.6 Score=45.44 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=26.7
Q ss_pred hCCCeEEEEecCCCcHHHH---HHHHHH-hcC-cEEEEcccHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN---ALQRFM-EAK-KGIYCSPLRL 329 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~---~L~~L~-~~~-~~lvl~Ptr~ 329 (808)
+-++.+.+.|.||||||.. .+..+. ..+ .+||+=|.=|
T Consensus 21 l~~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 21 LFNRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred hccceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 4468899999999999988 566666 433 4455447643
No 381
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=81.38 E-value=14 Score=45.76 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.8
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
...+++++||+|+|||..
T Consensus 206 ~~~n~LLvGppGvGKT~l 223 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAI 223 (758)
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 355889999999999988
No 382
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=81.31 E-value=1.4 Score=53.35 Aligned_cols=16 Identities=38% Similarity=0.521 Sum_probs=14.0
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
-+|..||.|+|||.++
T Consensus 42 AYLF~GP~GtGKTt~A 57 (725)
T PRK07133 42 AYLFSGPRGTGKTSVA 57 (725)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4689999999999883
No 383
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=81.05 E-value=1.4 Score=52.64 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=14.4
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+-+|+.||.|+|||..
T Consensus 47 ha~L~~Gp~GvGKTt~ 62 (598)
T PRK09111 47 QAFMLTGVRGVGKTTT 62 (598)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3689999999999988
No 384
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=81.01 E-value=4.2 Score=49.79 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.5
Q ss_pred eeEEEEccchhhhcccchhHHHHHHhhcc-ccceeccCCchHHHHHH
Q 003593 375 YDVAVIDEIQMMSDACRGYAWTRALLGLM-ADEIHLCGDPSVLDVVR 420 (808)
Q Consensus 375 v~~vVIDEAh~i~d~~~g~~~~~~l~~l~-~~~i~l~~s~~~~~~i~ 420 (808)
-++||.||+|.+-+. ..+...++..+. ..+|.|+++|--..+.+
T Consensus 822 PD~vVCDE~HiLKNe--ksa~Skam~~irtkRRI~LTGTPLQNNLmE 866 (1567)
T KOG1015|consen 822 PDFVVCDEGHILKNE--KSAVSKAMNSIRTKRRIILTGTPLQNNLME 866 (1567)
T ss_pred CCeEEecchhhhccc--hHHHHHHHHHHHhheeEEeecCchhhhhHH
Confidence 589999999999763 446667776654 45788899886544443
No 385
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=80.92 E-value=2.4 Score=42.36 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=31.0
Q ss_pred CeEEEEecCCCcHHHHHHHHHHh-cCcEEEEcccHHHHHHHHHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNA 340 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~ 340 (808)
..+++.|++|||||..+...... +...++++.....-.++.+++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~ 48 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAH 48 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHH
Confidence 35899999999999986555444 33567777555555555555543
No 386
>PLN02165 adenylate isopentenyltransferase
Probab=80.86 E-value=1.7 Score=48.01 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.0
Q ss_pred hCCCeEEEEecCCCcHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQ 313 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~ 313 (808)
..|+.++++||||||||..++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 4567899999999999987543
No 387
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.86 E-value=2.1 Score=48.73 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=66.9
Q ss_pred hCCCeEEEEecCCCcHHHH---HHHHHHhcC---cEEEEc-ccHHHHHHHHHHHHHccccccccccccccc-cccCCeEE
Q 003593 292 MKRKIIYHCGPTNSGKTYN---ALQRFMEAK---KGIYCS-PLRLLAMEVFDKVNALGVYCSLLTGQEKKL-VPFSNHIA 363 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~---~L~~L~~~~---~~lvl~-Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~-~~~~~~i~ 363 (808)
..+..+.|+|.+|+|||.+ .+..+.... .+++|- -+...+..++..+..--..-..-.|....- .....|
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h-- 250 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH-- 250 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH--
Confidence 4567899999999999998 334333322 335554 444666777666543110000001111000 000001
Q ss_pred EeeecccCCCceeEEEEccchhhhcccchhHHH-HHHhhccccceeccCCchHHHHHHHHhhhc
Q 003593 364 CTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWT-RALLGLMADEIHLCGDPSVLDVVRKICSET 426 (808)
Q Consensus 364 ~t~e~l~~~~lv~~vVIDEAh~i~d~~~g~~~~-~~l~~l~~~~i~l~~s~~~~~~i~~l~~~~ 426 (808)
.......=++|+||.|.+...+.+...+ -.+-.++..++.+++-+...++.++++...
T Consensus 251 -----~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL 309 (529)
T KOG2227|consen 251 -----TKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRL 309 (529)
T ss_pred -----HhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhh
Confidence 0111124589999999997532221111 112345566777888888888777665543
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=80.79 E-value=3 Score=47.77 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCeEEEEecCCCcHHHHH--HH-HHHh-cCcEEEEc--ccHHHHHHHHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNA--LQ-RFME-AKKGIYCS--PLRLLAMEVFDKVNA 340 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~--L~-~L~~-~~~~lvl~--Ptr~La~Qi~~~l~~ 340 (808)
...++++|++|+|||+.+ |. .+.. +.++++++ |.|.-|.++...+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 357899999999999872 22 2333 33555554 888888877665544
No 389
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=80.67 E-value=1.4 Score=49.41 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.9
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
..+..++++||||||||+.
T Consensus 132 ~~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTL 150 (358)
T ss_pred ccCCEEEEECCCCCCHHHH
Confidence 3678999999999999987
No 390
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=80.66 E-value=2.7 Score=50.76 Aligned_cols=52 Identities=21% Similarity=0.116 Sum_probs=36.5
Q ss_pred CCCeEEEEecCCCcHHHHH---H-HHHHhcCcEEEEcccHH--HHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNA---L-QRFMEAKKGIYCSPLRL--LAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~---L-~~L~~~~~~lvl~Ptr~--La~Qi~~~l~~~g~~ 344 (808)
..+.++++|+||+|||..+ + +.+..+..++|+=|-.. |...+...++..|..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4578999999999999873 2 23333444444447754 888888888887765
No 391
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.65 E-value=3 Score=48.49 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCCeEEEEecCCCcHHHHH--HHH-H-Hh-cC-cE-EEEc-ccHHHHHHHHHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYNA--LQR-F-ME-AK-KG-IYCS-PLRLLAMEVFDKVNA 340 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~--L~~-L-~~-~~-~~-lvl~-Ptr~La~Qi~~~l~~ 340 (808)
.|+.+.++||||+|||+++ |.. + .. ++ ++ |+-+ +.|.-+.++...+.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Ae 310 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGK 310 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHH
Confidence 5789999999999999982 222 2 22 22 33 3333 667777666665543
No 392
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=80.62 E-value=1.2 Score=40.95 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=13.0
Q ss_pred EEEEecCCCcHHHH
Q 003593 297 IYHCGPTNSGKTYN 310 (808)
Q Consensus 297 vlv~apTGSGKTl~ 310 (808)
++++||+|||||+.
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999987
No 393
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=80.55 E-value=11 Score=46.58 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.8
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
...+++++||+|+|||..
T Consensus 202 ~~~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAI 219 (731)
T ss_pred CCCceEEECCCCCCHHHH
Confidence 345899999999999988
No 394
>PRK10865 protein disaggregation chaperone; Provisional
Probab=80.51 E-value=3.6 Score=51.52 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
..+++++||+|+|||..
T Consensus 199 ~~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAI 215 (857)
T ss_pred cCceEEECCCCCCHHHH
Confidence 44899999999999988
No 395
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=80.48 E-value=8.4 Score=38.67 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=14.1
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
..+++.||+|+|||..
T Consensus 15 ~~~L~~G~~G~gkt~~ 30 (188)
T TIGR00678 15 HAYLFAGPEGVGKELL 30 (188)
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999987
No 396
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=80.32 E-value=1.4 Score=47.38 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.6
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQRF 315 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~L 315 (808)
+..++.++++||||+|||...-..+
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l 54 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFL 54 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHHhhh
Confidence 3689999999999999999844444
No 397
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=80.30 E-value=3.6 Score=53.65 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=39.9
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHH----Hhc---CcEEEEcccHHHHHHHHHHHHHc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRF----MEA---KKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L----~~~---~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
-.+++++|.|.-|||||.+....+ ..+ ...++|+=|+..|.++.+++.+.
T Consensus 12 ~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 12 TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 468899999999999999944333 222 25799999999999999988764
No 398
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.28 E-value=6.5 Score=43.59 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=14.2
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+.+++.||.|+|||..
T Consensus 37 ~~~Ll~G~~G~GKt~~ 52 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSI 52 (355)
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678999999999987
No 399
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.15 E-value=1.3 Score=50.42 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=14.1
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
-+|..||.|+|||+++
T Consensus 40 a~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 40 GYIFSGLRGVGKTTAA 55 (397)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999983
No 400
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=79.99 E-value=7.7 Score=45.30 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=35.1
Q ss_pred CeEEEEecCCCcHHHH-H---HHHHH-h---cCcEEEEcccHHHHHHHHHHHHHc
Q 003593 295 KIIYHCGPTNSGKTYN-A---LQRFM-E---AKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 295 rdvlv~apTGSGKTl~-~---L~~L~-~---~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
+.+++.-|=|.|||.. + +-.+. . +..++++++++.-|..+++.+...
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4678888999999987 2 22222 1 235678889999999999988875
No 401
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.83 E-value=16 Score=44.09 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=19.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHhcCc
Q 003593 294 RKIIYHCGPTNSGKTYNALQRFMEAKK 320 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~~L~~~~~ 320 (808)
.|.++++||.|-|||+.+=......|.
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCc
Confidence 578999999999999875443344443
No 402
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=79.63 E-value=2.1 Score=43.49 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=18.2
Q ss_pred EEEEecCCCcHHHH--HHHHHHhcCcE
Q 003593 297 IYHCGPTNSGKTYN--ALQRFMEAKKG 321 (808)
Q Consensus 297 vlv~apTGSGKTl~--~L~~L~~~~~~ 321 (808)
+.++||+|||||+. .|..++.++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~ 28 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKV 28 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCe
Confidence 56899999999988 56666533333
No 403
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=79.62 E-value=3.2 Score=47.61 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=32.1
Q ss_pred CeEEEEecCCCcHHHHH---HHHHH--hcCcEEEEc--ccHHHHHHHHHHHH-Hcccc
Q 003593 295 KIIYHCGPTNSGKTYNA---LQRFM--EAKKGIYCS--PLRLLAMEVFDKVN-ALGVY 344 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~---L~~L~--~~~~~lvl~--Ptr~La~Qi~~~l~-~~g~~ 344 (808)
..++++|++|+|||+.+ ...+. .+.+++++. +.|..|.++.+.+. ..|++
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 47899999999999882 22233 234555554 78877776665553 33443
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.49 E-value=3.5 Score=47.41 Aligned_cols=52 Identities=29% Similarity=0.317 Sum_probs=31.9
Q ss_pred CCCeEEEEecCCCcHHHHH--H-HHHHhc-CcEEEEc--ccHHHHHHHHHHHH-Hcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNA--L-QRFMEA-KKGIYCS--PLRLLAMEVFDKVN-ALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~--L-~~L~~~-~~~lvl~--Ptr~La~Qi~~~l~-~~g~~ 344 (808)
....++++|+||+|||+.+ | ..+... .++++++ +.|.-+.++...+. ..+++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 3568899999999999882 2 233333 3454444 66776666655543 33443
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.47 E-value=2.1 Score=46.88 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=54.5
Q ss_pred CeEEEEecCCCcHHHH---HHHHHHhcC-cEEEEc--ccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeec
Q 003593 295 KIIYHCGPTNSGKTYN---ALQRFMEAK-KGIYCS--PLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEM 368 (808)
Q Consensus 295 rdvlv~apTGSGKTl~---~L~~L~~~~-~~lvl~--Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~ 368 (808)
..++++|..|+|||+. ....+...+ ++++.+ -.|+-|.+|.+.+.+. ..+.++.+. .+..+ +..++..++.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-~gv~vI~~~-~G~Dp-AaVafDAi~~ 216 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-LGVPVISGK-EGADP-AAVAFDAIQA 216 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH-hCCeEEccC-CCCCc-HHHHHHHHHH
Confidence 3788999999999998 233444444 454444 7799998888777653 223334332 22211 2223333333
Q ss_pred ccCCCceeEEEEccchhhhc
Q 003593 369 VSTDEMYDVAVIDEIQMMSD 388 (808)
Q Consensus 369 l~~~~lv~~vVIDEAh~i~d 388 (808)
+... .+++|+||=|-++-.
T Consensus 217 Akar-~~DvvliDTAGRLhn 235 (340)
T COG0552 217 AKAR-GIDVVLIDTAGRLHN 235 (340)
T ss_pred HHHc-CCCEEEEeCcccccC
Confidence 3332 389999999988864
No 406
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=79.47 E-value=4.1 Score=44.99 Aligned_cols=49 Identities=31% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.|+.+.+.||+|||||+.+++.+. .++.++|+.+--.+-.+ .++.+|++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd 106 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVD 106 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCC
Confidence 378999999999999998666553 45688998865555443 44555554
No 407
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=79.46 E-value=9.4 Score=47.35 Aligned_cols=14 Identities=0% Similarity=-0.140 Sum_probs=12.1
Q ss_pred EECCCCccccccCc
Q 003593 514 VASDAVGMGLNLNI 527 (808)
Q Consensus 514 VATda~~~GIDipV 527 (808)
|+|.....|+|+|-
T Consensus 431 ~~~~~~~e~~d~~~ 444 (814)
T TIGR00596 431 FEIIDEENDIDIYS 444 (814)
T ss_pred ccccccccccccch
Confidence 78988899999975
No 408
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=79.46 E-value=2.9 Score=49.86 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=25.6
Q ss_pred HhCCCeEEEEecCCCcHHHHH---HHHHHh-cCcEEEEcccH
Q 003593 291 VMKRKIIYHCGPTNSGKTYNA---LQRFME-AKKGIYCSPLR 328 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~---L~~L~~-~~~~lvl~Ptr 328 (808)
-...+.++++|+||||||..+ |..+.. +.++||+=|.-
T Consensus 173 ~~e~~h~li~G~tGsGKs~~i~~ll~~~~~~g~~~ii~D~~g 214 (566)
T TIGR02759 173 GSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGC 214 (566)
T ss_pred cccccceEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 466789999999999999763 222222 33556665753
No 409
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=79.32 E-value=2.2 Score=48.00 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.7
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.+..++++||||||||+.
T Consensus 148 ~~GlilI~G~TGSGKTT~ 165 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL 165 (372)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 455789999999999988
No 410
>PRK13764 ATPase; Provisional
Probab=79.14 E-value=2.2 Score=50.87 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=24.5
Q ss_pred hCCCeEEEEecCCCcHHHH--HHH-HHHhcCcEE-EEcccHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN--ALQ-RFMEAKKGI-YCSPLRLL 330 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~--~L~-~L~~~~~~l-vl~Ptr~L 330 (808)
..++.++++||||||||+. +|. .+...++.+ .+--.++|
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccc
Confidence 4577899999999999987 322 333344443 33344454
No 411
>PRK14873 primosome assembly protein PriA; Provisional
Probab=79.13 E-value=6.6 Score=47.70 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=55.9
Q ss_pred CEEEEe-chhHHHHHHHHHHHhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCCCeeEEEECCCCccccccC-ccEEEEeC
Q 003593 459 DCVVAF-SRREIFEVKMAIEKHTN-HHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYS 534 (808)
Q Consensus 459 ~~II~f-srk~~~~l~~~L~~~~g-~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda~~~GIDip-V~~VI~~~ 534 (808)
..+|.+ ....+.++...+.+..| ..+..+|+++++.+|.++..+... |+.+|+|.|-.+ .=.-++ ...||..+
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~IViGtRSA-vFaP~~~LgLIIvdE 265 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARVVVGTRSA-VFAPVEDLGLVAIWD 265 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcEEEEccee-EEeccCCCCEEEEEc
Confidence 345555 46788888889988777 789999999999999999999954 999999999653 223332 56777655
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=79.09 E-value=2.9 Score=48.88 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=40.6
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH---h-cCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM---E-AKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~---~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
..|..+++.||+|+|||+..++.+. . +.+++|++ .-|-..|+..++..+|.+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~ 317 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDF 317 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCCh
Confidence 4577899999999999998655544 3 34778877 6677788888888887653
No 413
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=78.97 E-value=2.4 Score=47.26 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=26.3
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHHhc-CcEEEEcccHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFMEA-KKGIYCSPLRLL 330 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~~~-~~~lvl~Ptr~L 330 (808)
+..+++++++|+||||||+. ++..+... .+.+++--+.||
T Consensus 175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 35678999999999999986 34333332 344444455555
No 414
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=78.92 E-value=3.1 Score=42.86 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=25.2
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCS 325 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~ 325 (808)
..|+.+++.|++|+|||..+++.+. .+.+++|+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3478899999999999988554432 345777874
No 415
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.78 E-value=4.7 Score=46.58 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=19.5
Q ss_pred CCCeEEEEecCCCcHHHH--HHHHHHhc
Q 003593 293 KRKIIYHCGPTNSGKTYN--ALQRFMEA 318 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~--~L~~L~~~ 318 (808)
+=|-+++.||+|+|||+. ++-.++.+
T Consensus 255 HVKGiLLyGPPGTGKTLiARqIGkMLNA 282 (744)
T KOG0741|consen 255 HVKGILLYGPPGTGKTLIARQIGKMLNA 282 (744)
T ss_pred ceeeEEEECCCCCChhHHHHHHHHHhcC
Confidence 346789999999999998 45455543
No 416
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=78.76 E-value=5.7 Score=45.15 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCcHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~ 311 (808)
.+-+++.||.|+|||..+
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA 53 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAA 53 (394)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456899999999999873
No 417
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.75 E-value=1.7 Score=51.92 Aligned_cols=16 Identities=31% Similarity=0.301 Sum_probs=14.2
Q ss_pred eEEEEecCCCcHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA 311 (808)
Q Consensus 296 dvlv~apTGSGKTl~~ 311 (808)
.+|..||.|+|||+++
T Consensus 40 a~Lf~GPpG~GKTtiA 55 (624)
T PRK14959 40 AYLFSGTRGVGKTTIA 55 (624)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5888999999999983
No 418
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=78.73 E-value=7.7 Score=52.84 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=51.2
Q ss_pred hhHHHhCC--CeEEEEecCCCcHHHHH---HHHH---Hh--cCcEEEEcccHHHHHHHHHHHHHcccccccccccccccc
Q 003593 287 PFARVMKR--KIIYHCGPTNSGKTYNA---LQRF---ME--AKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLV 356 (808)
Q Consensus 287 ~i~~~l~g--rdvlv~apTGSGKTl~~---L~~L---~~--~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~ 356 (808)
++..++.+ +.+++.|+.|+|||+.. +.++ .+ +..++.++||-.-+.++. ..|+.+.-+..-.....
T Consensus 1027 Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~g~~a~Ti~s~l~~~~ 1102 (1960)
T TIGR02760 1027 AIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SAGVQAQTLDSFLTDIS 1102 (1960)
T ss_pred HHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hcCCchHhHHHHhcCcc
Confidence 55555554 67888999999999884 1222 22 346778899987776664 33554321111000000
Q ss_pred ccCCeEEEeeecccCCCceeEEEEccchhhhcc
Q 003593 357 PFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDA 389 (808)
Q Consensus 357 ~~~~~i~~t~e~l~~~~lv~~vVIDEAh~i~d~ 389 (808)
. ...... .. ..+++|||||=|+...
T Consensus 1103 ~----~~~~~~---~~-~~~v~ivDEasMv~~~ 1127 (1960)
T TIGR02760 1103 L----YRNSGG---DF-RNTLFILDESSMVSNF 1127 (1960)
T ss_pred c----ccccCC---CC-cccEEEEEccccccHH
Confidence 0 000000 11 1579999999999753
No 419
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=78.59 E-value=3.7 Score=50.61 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=38.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHH---HHh-c----CcEEEEcccHHHHHHHHHHHHHc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQR---FME-A----KKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~---L~~-~----~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
....++|+|..|||||.+.... |+. . .+.|+++-|+..|.++.+++.++
T Consensus 16 ~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 16 TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4567999999999999984433 332 2 26789999999999999999765
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=78.54 E-value=2 Score=43.99 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=18.8
Q ss_pred CCCeEEEEecCCCcHHHH--HHHHHHh
Q 003593 293 KRKIIYHCGPTNSGKTYN--ALQRFME 317 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~--~L~~L~~ 317 (808)
.|..+.++||+|||||+. .|..++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 466788999999999987 4444443
No 421
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=78.47 E-value=1.5 Score=53.02 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=37.1
Q ss_pred CeEEEEecCCCcHHHH-HHHHHHh-cCcEEEEcccHHHHHHHHHHHHH-cccccc
Q 003593 295 KIIYHCGPTNSGKTYN-ALQRFME-AKKGIYCSPLRLLAMEVFDKVNA-LGVYCS 346 (808)
Q Consensus 295 rdvlv~apTGSGKTl~-~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~-~g~~~~ 346 (808)
..++++||||||||.. .++.|+. ++.+||+=|--|+..-.....++ .|..+-
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~ 230 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVL 230 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEE
Confidence 5799999999999998 5566665 44667777999998666555433 344443
No 422
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=78.47 E-value=6 Score=39.01 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.4
Q ss_pred CeEEEEecCCCcHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~ 311 (808)
+-+|+.||.|+||+..+
T Consensus 20 ha~L~~G~~g~gk~~~a 36 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLA 36 (162)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eeEEEECCCCCCHHHHH
Confidence 35799999999999884
No 423
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=78.35 E-value=1.4 Score=51.76 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=13.4
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-.++.||.|+|||.+
T Consensus 38 ayLf~Gp~G~GKTt~ 52 (535)
T PRK08451 38 AYLFSGLRGSGKTSS 52 (535)
T ss_pred eEEEECCCCCcHHHH
Confidence 458999999999988
No 424
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=78.11 E-value=3.4 Score=45.29 Aligned_cols=46 Identities=28% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCeEEEEecCCCcHHHH---H-HHHHHhcCcEEEEc---ccHHHHHHHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN---A-LQRFMEAKKGIYCS---PLRLLAMEVFDKVN 339 (808)
Q Consensus 294 grdvlv~apTGSGKTl~---~-L~~L~~~~~~lvl~---Ptr~La~Qi~~~l~ 339 (808)
|.-.+..||||||||+- + |.-...+-.+|+.+ |..-||.-+.....
T Consensus 273 GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qya 325 (514)
T KOG2373|consen 273 GELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYA 325 (514)
T ss_pred CceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHc
Confidence 45789999999999976 3 33334455677665 77777766654443
No 425
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.09 E-value=14 Score=43.48 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=29.3
Q ss_pred hCCCeEEEEecCCCcHHHHH--HHH-HHh---cCcEEEEc--ccHHHHHHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNA--LQR-FME---AKKGIYCS--PLRLLAMEVFDKV 338 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~--L~~-L~~---~~~~lvl~--Ptr~La~Qi~~~l 338 (808)
-.|+.++++||||+|||+.+ |.. +.. +.++.++. +.|..+.++....
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y 402 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY 402 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh
Confidence 46899999999999999882 322 222 12344443 5676665554433
No 426
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=78.03 E-value=8.4 Score=42.35 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=30.2
Q ss_pred hCCCeEEEEecCCCcHHHH---HHHHHHhcC-cEEEE-------c---ccHHHHHHHHHHHHHc
Q 003593 292 MKRKIIYHCGPTNSGKTYN---ALQRFMEAK-KGIYC-------S---PLRLLAMEVFDKVNAL 341 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~---~L~~L~~~~-~~lvl-------~---Ptr~La~Qi~~~l~~~ 341 (808)
-.+..|+++||-|||||.- .|....+.+ ..++| + -.++++.|...++++.
T Consensus 47 gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~ 110 (408)
T KOG2228|consen 47 GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI 110 (408)
T ss_pred cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh
Confidence 4567999999999999987 233222222 22322 2 3455566666666553
No 427
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.03 E-value=4.3 Score=43.37 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.2
Q ss_pred HhCCCeEEEEecCCCcHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~ 310 (808)
+..|+.+++.||+|+|||..
T Consensus 18 l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHH
Confidence 36789999999999999998
No 428
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=78.01 E-value=2.1 Score=50.93 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.2
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+-+++.||.|+|||..
T Consensus 39 hayLf~Gp~G~GKTt~ 54 (563)
T PRK06647 39 NAYIFSGPRGVGKTSS 54 (563)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578999999999988
No 429
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=77.97 E-value=2.6 Score=43.07 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=25.8
Q ss_pred hCCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcc
Q 003593 292 MKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSP 326 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~P 326 (808)
..|+.+.+.||+|||||..+++.+. .+.+++|+.-
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3578999999999999988555443 3446777764
No 430
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=77.88 E-value=1.6 Score=40.27 Aligned_cols=14 Identities=43% Similarity=0.292 Sum_probs=12.9
Q ss_pred EEEEecCCCcHHHH
Q 003593 297 IYHCGPTNSGKTYN 310 (808)
Q Consensus 297 vlv~apTGSGKTl~ 310 (808)
|++.|++|||||+.
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 57899999999988
No 431
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=77.79 E-value=6.7 Score=43.22 Aligned_cols=49 Identities=29% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 294 RKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
|+.+-+.||+|||||..+|+.+. .++.++++-|-..|-.... ..+|++.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a---~~lGvdl 105 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYA---ESLGVDL 105 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHH---HHTT--G
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHH---HhcCccc
Confidence 78899999999999999776654 3567788888777655443 3445554
No 432
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=77.57 E-value=5.8 Score=43.14 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=13.8
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
.+++.||+|+|||+.
T Consensus 40 ~~ll~G~~G~GKt~~ 54 (319)
T PRK00440 40 HLLFAGPPGTGKTTA 54 (319)
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999988
No 433
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=77.52 E-value=12 Score=47.05 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=15.6
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
...+++++||+|+|||..
T Consensus 193 ~~~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAI 210 (852)
T ss_pred CCCceEEEcCCCCCHHHH
Confidence 345899999999999987
No 434
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=77.41 E-value=3 Score=39.45 Aligned_cols=15 Identities=53% Similarity=0.857 Sum_probs=13.5
Q ss_pred EEEEecCCCcHHHHH
Q 003593 297 IYHCGPTNSGKTYNA 311 (808)
Q Consensus 297 vlv~apTGSGKTl~~ 311 (808)
++++||+|||||+.+
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999874
No 435
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.36 E-value=4.5 Score=43.53 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=45.2
Q ss_pred CCCeEEEEecCCCcHHHHH--HHH-HHh-cCcEEEE-c-ccH-HHHHHHHHHHHHccccccccccccccccccCCeEEEe
Q 003593 293 KRKIIYHCGPTNSGKTYNA--LQR-FME-AKKGIYC-S-PLR-LLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACT 365 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~--L~~-L~~-~~~~lvl-~-Ptr-~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t 365 (808)
.+..++++||+|+|||+.+ +.. +.. +..+.++ + +.| ..+.|+.......+.+... .... ..+.-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~--~~~~------~~l~~~ 145 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA--VRDE------AAMTRA 145 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEe--cCCH------HHHHHH
Confidence 5679999999999999872 222 222 2344333 3 555 4555555544444433221 1000 001111
Q ss_pred eecccCCCceeEEEEccchhhh
Q 003593 366 VEMVSTDEMYDVAVIDEIQMMS 387 (808)
Q Consensus 366 ~e~l~~~~lv~~vVIDEAh~i~ 387 (808)
++.+.....+++++||-+=+..
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKNY 167 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCCc
Confidence 2222222237999999986663
No 436
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=77.17 E-value=3.7 Score=51.24 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=66.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH---h-----cCcEEEEcccHHHHHHHHHHHHHcccc---cccccccccc------c
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM---E-----AKKGIYCSPLRLLAMEVFDKVNALGVY---CSLLTGQEKK------L 355 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~---~-----~~~~lvl~Ptr~La~Qi~~~l~~~g~~---~~l~~g~~~~------~ 355 (808)
.+...++.-.-|-|||++.+..+. . .+.+++++|+- ++.++.+.+.++... +....|.... .
T Consensus 357 ~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~ 435 (866)
T COG0553 357 NLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREA 435 (866)
T ss_pred ccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhCccccceeeeeCCcccccHHHHH
Confidence 355666679999999998444442 1 35788888884 456666666666333 3344454421 1
Q ss_pred cc---c------CCeEEEeeecccC---CCc------eeEEEEccchhhhcccchhHHHHHHhhcccc-ceeccCCc
Q 003593 356 VP---F------SNHIACTVEMVST---DEM------YDVAVIDEIQMMSDACRGYAWTRALLGLMAD-EIHLCGDP 413 (808)
Q Consensus 356 ~~---~------~~~i~~t~e~l~~---~~l------v~~vVIDEAh~i~d~~~g~~~~~~l~~l~~~-~i~l~~s~ 413 (808)
.. . ...+++|.+.+.. ... ++++|+||||.+.+.. +..+. .+..+... +..++++|
T Consensus 436 ~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~-~l~~~~~~~~~~LtgTP 510 (866)
T COG0553 436 LRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK-ALQFLKALNRLDLTGTP 510 (866)
T ss_pred HHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH-HHHHHhhcceeeCCCCh
Confidence 10 1 2334455555544 211 8999999999986531 12222 22233332 34566777
No 437
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.16 E-value=1.4 Score=46.49 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhcCCeE-EEEcCCCCHHHHHHHHHHH
Q 003593 467 REIFEVKMAIEKHTNHHC-CVIYGALPPETRRQQANLF 503 (808)
Q Consensus 467 k~~~~l~~~L~~~~g~~v-~~lhg~l~~~~R~~~~~~F 503 (808)
++..+.+-.+.+. |.-| +.+|+.-....-++++.-|
T Consensus 212 retMeyAi~fAeT-GHLcmaTLHAN~anQaleRIinff 248 (375)
T COG5008 212 RETMEYAIQFAET-GHLCMATLHANNANQALERIINFF 248 (375)
T ss_pred HhHHHHHHHHHhc-CceEEEEeccCCchHHHHHHHhhC
Confidence 4555666666554 5544 5688888877777787777
No 438
>PRK14530 adenylate kinase; Provisional
Probab=77.04 E-value=1.7 Score=44.92 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.5
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
|.+..++++||+|||||+.
T Consensus 1 ~~~~~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQ 19 (215)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567899999999999987
No 439
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=76.93 E-value=2.7 Score=46.06 Aligned_cols=19 Identities=53% Similarity=0.649 Sum_probs=16.2
Q ss_pred CCeEEEEecCCCcHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNAL 312 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L 312 (808)
.+.++++||||||||..+.
T Consensus 4 ~~~i~i~GptgsGKt~la~ 22 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAI 22 (307)
T ss_pred ceEEEEECCCCcCHHHHHH
Confidence 4678999999999998754
No 440
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=76.72 E-value=2.1 Score=49.60 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=14.2
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+.+|+.||.|+|||..
T Consensus 40 ha~Lf~Gp~G~GKtt~ 55 (451)
T PRK06305 40 HAYLFSGIRGTGKTTL 55 (451)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4578999999999988
No 441
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.29 E-value=2.2 Score=51.30 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.2
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
..+|+.||.|+|||..
T Consensus 39 ~a~Lf~Gp~G~GKttl 54 (620)
T PRK14948 39 PAYLFTGPRGTGKTSS 54 (620)
T ss_pred ceEEEECCCCCChHHH
Confidence 3579999999999988
No 442
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=76.28 E-value=4.4 Score=40.05 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=29.0
Q ss_pred HHHHHHHCCCCC-------CcchhhhHHHhCCCeEEEEecCCCcHHHH
Q 003593 270 FRAMIESADLTK-------PHTWFPFARVMKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 270 i~~~l~~~g~~~-------pt~~~~i~~~l~grdvlv~apTGSGKTl~ 310 (808)
+++.++.+||.- +..+..+...+.++.++++|++|.|||..
T Consensus 4 ~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSL 51 (161)
T PF03193_consen 4 LLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSL 51 (161)
T ss_dssp HHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHH
T ss_pred HHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHH
Confidence 344556666652 22234566678899999999999999975
No 443
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=76.18 E-value=3.9 Score=48.27 Aligned_cols=53 Identities=28% Similarity=0.583 Sum_probs=33.5
Q ss_pred hhhhhHhhhcccCchHHHHHHHHH--HHCCCCCCcchhhhHHHhCCCeEEEEecCCCcHHHH--HHHHHH
Q 003593 251 LFPIFVEFCIEEFPDEIKRFRAMI--ESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYN--ALQRFM 316 (808)
Q Consensus 251 ~~p~f~~~~~~~fp~~l~~i~~~l--~~~g~~~pt~~~~i~~~l~grdvlv~apTGSGKTl~--~L~~L~ 316 (808)
.+|.|.++. ...+.+.+|++.+ ...|+.. .++.++++||+|+|||.. .|...+
T Consensus 71 ry~fF~d~y--Glee~ieriv~~l~~Aa~gl~~-----------~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 71 RYPAFEEFY--GMEEAIEQIVSYFRHAAQGLEE-----------KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccchhccc--CcHHHHHHHHHHHHHHHHhcCC-----------CCceEEEecCCCCCchHHHHHHHHHH
Confidence 345565433 2235666777766 3444433 467899999999999977 444433
No 444
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=76.14 E-value=4.8 Score=48.91 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=38.1
Q ss_pred eEEEEecCCCcHHHHHHHHHHh-cCcEEEEcccHHHHHHHHHHHHHc
Q 003593 296 IIYHCGPTNSGKTYNALQRFME-AKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 296 dvlv~apTGSGKTl~~L~~L~~-~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
..++.|.||||||+.+...+.. +..+|||+|+..+|.|+++.|..+
T Consensus 34 ~~ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 34 HQTLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 5678999999999985443332 567899999999999999999887
No 445
>PRK05480 uridine/cytidine kinase; Provisional
Probab=76.11 E-value=3.1 Score=42.57 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=17.9
Q ss_pred CCCeEEEEecCCCcHHHH--HHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN--ALQRFM 316 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~--~L~~L~ 316 (808)
.+..+.++|++|||||+. .|...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345788899999999987 444444
No 446
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=76.11 E-value=4.6 Score=44.53 Aligned_cols=49 Identities=29% Similarity=0.328 Sum_probs=33.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.|+.+.+.||+|||||+.+++.+. .++.++|+..--.+-.+ .++.+|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd 106 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVD 106 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCC
Confidence 478999999999999998665543 45678888654444433 34555554
No 447
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=76.06 E-value=5.1 Score=48.13 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCCeEEEEecCCCcHHHHH----HHHHHhcCcEEEEcccH--HHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNA----LQRFMEAKKGIYCSPLR--LLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~----L~~L~~~~~~lvl~Ptr--~La~Qi~~~l~~~g~~ 344 (808)
....++++|+||+|||..+ .+.+..+..++++=|-. +|+..++..++..|..
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 4568899999999999882 23343444455555876 6777888888877763
No 448
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=75.98 E-value=4.5 Score=39.95 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=22.6
Q ss_pred eEEEEecCCCcHHHHH---HHHHHhc-CcEEEEc--ccHHHHH
Q 003593 296 IIYHCGPTNSGKTYNA---LQRFMEA-KKGIYCS--PLRLLAM 332 (808)
Q Consensus 296 dvlv~apTGSGKTl~~---L~~L~~~-~~~lvl~--Ptr~La~ 332 (808)
.+++.||+|+|||..+ ...+... .+++++. +.|.-+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~ 44 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAI 44 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHH
Confidence 4678999999999983 2233333 3555554 5553333
No 449
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=75.97 E-value=5 Score=43.03 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHH----HHHHHhcCcEEEEcccHHH
Q 003593 297 IYHCGPTNSGKTYNA----LQRFMEAKKGIYCSPLRLL 330 (808)
Q Consensus 297 vlv~apTGSGKTl~~----L~~L~~~~~~lvl~Ptr~L 330 (808)
.++.|+.||+||.-+ +.+.+..|+.|| +.-|-|
T Consensus 4 ~ihhG~pGSyKTsgAv~~~~iPA~ksGR~II-TNVrGl 40 (398)
T COG4128 4 SIHHGIPGSYKTSGAVCNVIIPAFKSGRRII-TNVRGL 40 (398)
T ss_pred EEEecCCCCcccchhHHhhhhhhhcCCcEEE-Eecccc
Confidence 578999999999763 233344555544 444444
No 450
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=75.87 E-value=3.2 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCcHHHH---HHHHHHh
Q 003593 294 RKIIYHCGPTNSGKTYN---ALQRFME 317 (808)
Q Consensus 294 grdvlv~apTGSGKTl~---~L~~L~~ 317 (808)
...+++.|+||||||.+ .+..++.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 44899999999999988 3444444
No 451
>PRK09354 recA recombinase A; Provisional
Probab=75.77 E-value=5.8 Score=44.19 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=35.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.|+.+.+.||+|||||+.+++.+. .++.++|+..--.+-. ..++.+|+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvd 111 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVD 111 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCC
Confidence 378999999999999998666553 4568888875555443 345555654
No 452
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=75.50 E-value=2.4 Score=40.59 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=12.5
Q ss_pred EEEEecCCCcHHHH
Q 003593 297 IYHCGPTNSGKTYN 310 (808)
Q Consensus 297 vlv~apTGSGKTl~ 310 (808)
++++||||||||..
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999986
No 453
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=75.45 E-value=2.5 Score=49.83 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHHhc
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFMEA 318 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~~~ 318 (808)
+-.|+-+.++||+|||||+. .|..+...
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35789999999999999987 44444443
No 454
>PRK00300 gmk guanylate kinase; Provisional
Probab=75.45 E-value=2.6 Score=42.89 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.9
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
..|+.++++||+|||||..
T Consensus 3 ~~g~~i~i~G~sGsGKstl 21 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTL 21 (205)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688999999999999986
No 455
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=75.26 E-value=4.3 Score=52.47 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=41.0
Q ss_pred hCCCeEEEEecCCCcHHHH----HHHHHHhcC-----cEEEEcccHHHHHHHHHHHHHc
Q 003593 292 MKRKIIYHCGPTNSGKTYN----ALQRFMEAK-----KGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~----~L~~L~~~~-----~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
-.+.++++.|-.|||||.+ ++..|+.++ ..||++.|+.-+.++..++...
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 4677999999999999998 556666642 4689999999999999888653
No 456
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=75.19 E-value=3.8 Score=45.57 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=24.9
Q ss_pred CCeEEEEecCCCcHHHH--HHHHHHhcCcEEEEccc
Q 003593 294 RKIIYHCGPTNSGKTYN--ALQRFMEAKKGIYCSPL 327 (808)
Q Consensus 294 grdvlv~apTGSGKTl~--~L~~L~~~~~~lvl~Pt 327 (808)
...+++.|++|+|||+. .+..+.....+++-+|.
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~ 60 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPF 60 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCC
Confidence 45799999999999998 66666665555554444
No 457
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=75.00 E-value=3.5 Score=41.33 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=16.7
Q ss_pred CCCeEEEEecCCCcHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~ 311 (808)
++|-++++||+|||||..+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~ 19 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLA 19 (183)
T ss_dssp SSSEEEEESSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999873
No 458
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=74.74 E-value=3.4 Score=50.64 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=50.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHH----hcCcEEEEcccHHHHHHHHHHHHHccccccccccccccccccCCeEEEeeec
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLTGQEKKLVPFSNHIACTVEM 368 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~----~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~~l~~g~~~~~~~~~~~i~~t~e~ 368 (808)
.|..+.+.||+|||||..+++.+. .++.++|+..--.+... .++.+|++..-+. ........+....++.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~---~A~~lGvDl~~ll---v~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD---YAKKLGVDTDSLL---VSQPDTGEQALEIADM 132 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH---HHHHcCCChhHeE---EecCCCHHHHHHHHHH
Confidence 378999999999999998655443 45788898865555533 5566666543110 0000000001001111
Q ss_pred ccCCCceeEEEEccchhhh
Q 003593 369 VSTDEMYDVAVIDEIQMMS 387 (808)
Q Consensus 369 l~~~~lv~~vVIDEAh~i~ 387 (808)
+-....+++||||-+--+.
T Consensus 133 lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 133 LIRSGALDIVVIDSVAALV 151 (790)
T ss_pred HhhcCCCeEEEEcchhhhc
Confidence 1112238999999988665
No 459
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=74.66 E-value=5.6 Score=41.19 Aligned_cols=33 Identities=39% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH----HhcCcEEEEc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCS 325 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L----~~~~~~lvl~ 325 (808)
.|..+++.||+|+|||..+++.+ ..+.+++|+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47899999999999998844433 2345677765
No 460
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=74.57 E-value=14 Score=45.15 Aligned_cols=92 Identities=18% Similarity=0.156 Sum_probs=53.5
Q ss_pred CCeEEEEecCCCcHHHH---HHHHHHh-c--CcEEEEcccHHHHHHHHHHHH----Hcccccccccc--cccccc--ccC
Q 003593 294 RKIIYHCGPTNSGKTYN---ALQRFME-A--KKGIYCSPLRLLAMEVFDKVN----ALGVYCSLLTG--QEKKLV--PFS 359 (808)
Q Consensus 294 grdvlv~apTGSGKTl~---~L~~L~~-~--~~~lvl~Ptr~La~Qi~~~l~----~~g~~~~l~~g--~~~~~~--~~~ 359 (808)
.+.+++.|.-|=|||.+ ++..+.. . .+++|.+|+.+-++.+.+-+. .+|..-.+... .....+ ...
T Consensus 231 ~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~~~~~~~~~ 310 (758)
T COG1444 231 KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGEIREVSGDGF 310 (758)
T ss_pred CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccceeeecCCce
Confidence 44788999999999998 3333332 2 367788899987777766554 34433222111 111111 111
Q ss_pred CeEEEeeecccCCCceeEEEEccchhhh
Q 003593 360 NHIACTVEMVSTDEMYDVAVIDEIQMMS 387 (808)
Q Consensus 360 ~~i~~t~e~l~~~~lv~~vVIDEAh~i~ 387 (808)
.+-+..|.... .. -+++|||||=.|.
T Consensus 311 ~i~y~~P~~a~-~~-~DllvVDEAAaIp 336 (758)
T COG1444 311 RIEYVPPDDAQ-EE-ADLLVVDEAAAIP 336 (758)
T ss_pred eEEeeCcchhc-cc-CCEEEEehhhcCC
Confidence 12234444444 22 6899999998886
No 461
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=74.57 E-value=2.5 Score=44.08 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.1
Q ss_pred HhCCCeEEEEecCCCcHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~ 310 (808)
+-.|.-+.++||+|||||+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTL 47 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTL 47 (226)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 36799999999999999987
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=74.48 E-value=2.1 Score=42.52 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.3
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
|+.++++||+|||||+.
T Consensus 1 g~ii~l~G~~GsGKsTl 17 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTL 17 (180)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 57789999999999986
No 463
>PRK08233 hypothetical protein; Provisional
Probab=74.24 E-value=3.5 Score=40.80 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.+..+.+.|++|||||+.
T Consensus 2 ~~~iI~I~G~~GsGKtTl 19 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTL 19 (182)
T ss_pred CceEEEEECCCCCCHHHH
Confidence 456788889999999987
No 464
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=74.08 E-value=2.4 Score=43.76 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=21.3
Q ss_pred HhCCCeEEEEecCCCcHHHH--HHHHHHh
Q 003593 291 VMKRKIIYHCGPTNSGKTYN--ALQRFME 317 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~--~L~~L~~ 317 (808)
+-.|..++++||.|||||+. .+..|..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 36799999999999999986 4555443
No 465
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=73.77 E-value=3.8 Score=44.88 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHh----------cCcEEEEc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFME----------AKKGIYCS 325 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~~----------~~~~lvl~ 325 (808)
.|..+.++||+|+|||..+++.+.. ++.++||.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 4778899999999999886555433 34778886
No 466
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=73.76 E-value=8.6 Score=46.15 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=58.6
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCCe-eEEEECCCCcccccc-CccEEEEeCCccCCCCccccCCHhHHHHHhCccCCCC
Q 003593 485 CVIYGALPPETRRQQANLFNDQDNEF-DVLVASDAVGMGLNL-NIRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRG 562 (808)
Q Consensus 485 ~~lhg~l~~~~R~~~~~~F~~~~g~~-~ILVATda~~~GIDi-pV~~VI~~~~~K~dg~~~~P~s~~~y~Qr~GRAGR~G 562 (808)
.-+.|..+..+|++.+++|+...|-. -++++|-+..-|||+ ....+|.+|. -.+..-=.|-+-|.-|.|
T Consensus 765 ~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda---------~wnpchdaqavcRvyrYG 835 (1387)
T KOG1016|consen 765 LRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDA---------CWNPCHDAQAVCRVYRYG 835 (1387)
T ss_pred ecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEe---------ecCccccchhhhhhhhhc
Confidence 34568899999999999998755544 688899999999998 6556665665 224444556667778888
Q ss_pred CCCCceEEEEEecC
Q 003593 563 SIYPDGLTTTLNLD 576 (808)
Q Consensus 563 ~~~~~G~~i~l~~~ 576 (808)
.. ..-.+|.++.+
T Consensus 836 Q~-KpcfvYRlVmD 848 (1387)
T KOG1016|consen 836 QQ-KPCFVYRLVMD 848 (1387)
T ss_pred Cc-CceeEEeehhh
Confidence 62 24566666643
No 467
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=73.37 E-value=3.6 Score=51.51 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=15.2
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
..+++++||.|+|||..
T Consensus 208 ~~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAV 224 (852)
T ss_pred cCceeEECCCCCCHHHH
Confidence 34899999999999988
No 468
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=73.14 E-value=6 Score=39.81 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=16.4
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.|+-+++.|+.|||||+.
T Consensus 2 ~g~~IvieG~~GsGKsT~ 19 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQ 19 (195)
T ss_pred CceEEEEECCCCCCHHHH
Confidence 577899999999999988
No 469
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=73.03 E-value=8.9 Score=42.49 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=13.6
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-.++.||.|.|||..
T Consensus 24 a~Lf~G~~G~GK~~~ 38 (328)
T PRK05707 24 AYLLHGPAGIGKRAL 38 (328)
T ss_pred eeeeECCCCCCHHHH
Confidence 578999999999987
No 470
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=72.89 E-value=14 Score=40.50 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=20.2
Q ss_pred EEEecCCCcHHHH----HHHHHHhcC--cEEEEcccHHHHHHH
Q 003593 298 YHCGPTNSGKTYN----ALQRFMEAK--KGIYCSPLRLLAMEV 334 (808)
Q Consensus 298 lv~apTGSGKTl~----~L~~L~~~~--~~lvl~Ptr~La~Qi 334 (808)
++.++.|+|||.. ++..+...+ ..++++|+..-+.++
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 43 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDI 43 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHH
Confidence 4689999999998 233333333 455566666555553
No 471
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=72.79 E-value=3 Score=41.46 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.0
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
|+.++++||+|||||+.
T Consensus 1 ~~~~~i~G~sGsGKttl 17 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTL 17 (179)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999988
No 472
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=72.75 E-value=2 Score=47.94 Aligned_cols=17 Identities=41% Similarity=0.606 Sum_probs=15.4
Q ss_pred CeEEEEecCCCcHHHHH
Q 003593 295 KIIYHCGPTNSGKTYNA 311 (808)
Q Consensus 295 rdvlv~apTGSGKTl~~ 311 (808)
++++..||+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 58999999999999874
No 473
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=72.48 E-value=6.8 Score=39.21 Aligned_cols=49 Identities=27% Similarity=0.327 Sum_probs=30.5
Q ss_pred CCCeEEEEecCCCcHHHHHHH---HHHh-----------cCcEEEEcccHHHHHHHHHHHHHcc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQ---RFME-----------AKKGIYCSPLRLLAMEVFDKVNALG 342 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~---~L~~-----------~~~~lvl~Ptr~La~Qi~~~l~~~g 342 (808)
.|.-+++.||+|+|||+..+. .+.. .++++|+..=-. ..++..++...+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 688899999999999988332 2222 346677753322 556666666543
No 474
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=72.17 E-value=7 Score=46.01 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=35.7
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH----Hh-cCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF----ME-AKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L----~~-~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
.|..+++.|++|+|||+-+++.+ .. +.+++|++ +-+-..|+.+.+..+|...
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d~ 86 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT-FEESPEDIIRNVASFGWDL 86 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE-ccCCHHHHHHHHHHcCCCH
Confidence 47899999999999998854433 23 44677765 4444556666677777653
No 475
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=72.11 E-value=13 Score=40.51 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCCeEEEEecCCCcHHHH----HHHHHHhcC-cEEEEcccHHHHHHHHHHHHHcccc
Q 003593 293 KRKIIYHCGPTNSGKTYN----ALQRFMEAK-KGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~----~L~~L~~~~-~~lvl~Ptr~La~Qi~~~l~~~g~~ 344 (808)
.+.-.++-=.||.||--+ ++...+.+. +.|+++..-.|-.+....++..|..
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~ 117 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD 117 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC
Confidence 345566666899999876 333444544 6999999999999999999988754
No 476
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=71.81 E-value=7.2 Score=45.91 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=37.5
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH----HhcCcEEEEcccHHHHHHHHHHHHHccccc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF----MEAKKGIYCSPLRLLAMEVFDKVNALGVYC 345 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L----~~~~~~lvl~Ptr~La~Qi~~~l~~~g~~~ 345 (808)
.|..+++.|++|+|||+.+++.+ ..+.+++|++ +-+-..++.+.+..+|.+.
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis-~e~~~~~i~~~~~~~g~~~ 327 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA-FEESRAQLIRNARSWGIDL 327 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE-ecCCHHHHHHHHHHcCCCh
Confidence 36788999999999999854444 3445777776 3445778888888877553
No 477
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=71.61 E-value=6.2 Score=42.04 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=29.9
Q ss_pred HhCCCeEEEEecCCCcHHHHHHHH---H-Hh-cCcEEEEcccHHHHHHHHHHHH
Q 003593 291 VMKRKIIYHCGPTNSGKTYNALQR---F-ME-AKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 291 ~l~grdvlv~apTGSGKTl~~L~~---L-~~-~~~~lvl~Ptr~La~Qi~~~l~ 339 (808)
+..|..+++.||||+|||..+++. + .. +..++|++ +-.-..++..++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-~E~~~~~~~~r~~ 79 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-LEEPVVRTARRLL 79 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-cccCHHHHHHHHH
Confidence 367889999999999999873332 2 23 44677776 2222344444443
No 478
>PLN02748 tRNA dimethylallyltransferase
Probab=71.60 E-value=4.4 Score=46.92 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=17.3
Q ss_pred hCCCeEEEEecCCCcHHHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYNAL 312 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~~L 312 (808)
-.++.++++||||||||..++
T Consensus 20 ~~~~~i~i~GptgsGKs~la~ 40 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAV 40 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 456679999999999998754
No 479
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.53 E-value=3.5 Score=49.61 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.1
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
+-+|.+||.|+|||.+
T Consensus 40 hayLf~Gp~G~GKtt~ 55 (614)
T PRK14971 40 HAYLFCGPRGVGKTTC 55 (614)
T ss_pred eeEEEECCCCCCHHHH
Confidence 3578999999999997
No 480
>PF05729 NACHT: NACHT domain
Probab=71.46 E-value=5.2 Score=38.48 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.4
Q ss_pred CeEEEEecCCCcHHHH
Q 003593 295 KIIYHCGPTNSGKTYN 310 (808)
Q Consensus 295 rdvlv~apTGSGKTl~ 310 (808)
|-+++.|+.|+|||..
T Consensus 1 r~l~I~G~~G~GKStl 16 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTL 16 (166)
T ss_pred CEEEEECCCCCChHHH
Confidence 4689999999999987
No 481
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=70.76 E-value=4.2 Score=44.12 Aligned_cols=18 Identities=44% Similarity=0.624 Sum_probs=14.8
Q ss_pred EEEEecCCCcHHHHHHHH
Q 003593 297 IYHCGPTNSGKTYNALQR 314 (808)
Q Consensus 297 vlv~apTGSGKTl~~L~~ 314 (808)
++++||||||||..++.-
T Consensus 2 i~i~G~t~~GKs~la~~l 19 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQL 19 (287)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999875443
No 482
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=70.73 E-value=4.9 Score=44.23 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=25.2
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHh----------cCcEEEEc
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRFME----------AKKGIYCS 325 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L~~----------~~~~lvl~ 325 (808)
.|..+.++||+|+|||..+++.+.. ++.++||.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 4788999999999999886665543 23677776
No 483
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=70.69 E-value=2.9 Score=42.08 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=15.5
Q ss_pred CCeEEEEecCCCcHHHH
Q 003593 294 RKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 294 grdvlv~apTGSGKTl~ 310 (808)
|..++++||.|||||+.
T Consensus 2 g~~i~l~G~sGsGKsTl 18 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSL 18 (186)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 57899999999999987
No 484
>PRK08118 topology modulation protein; Reviewed
Probab=70.60 E-value=3 Score=41.40 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=13.7
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
.++++||.|||||+.
T Consensus 3 rI~I~G~~GsGKSTl 17 (167)
T PRK08118 3 KIILIGSGGSGKSTL 17 (167)
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999986
No 485
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=70.49 E-value=3.4 Score=41.66 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=15.6
Q ss_pred CCCeEEEEecCCCcHHHHHHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYNALQRF 315 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L~~L 315 (808)
.+..++++||.|||||.-+..-.
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~ 24 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLV 24 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHh
Confidence 35689999999999998755433
No 486
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=70.43 E-value=6.7 Score=49.13 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred eEEEEecCCCcHHHH--HHHHHHh-cCcEEEEcc
Q 003593 296 IIYHCGPTNSGKTYN--ALQRFME-AKKGIYCSP 326 (808)
Q Consensus 296 dvlv~apTGSGKTl~--~L~~L~~-~~~~lvl~P 326 (808)
.++.+||||+|||.. +|...+- +...++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 579999999999987 4444443 333444443
No 487
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=70.28 E-value=23 Score=39.12 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=13.6
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
-+++.||.|.||+..
T Consensus 28 A~Lf~Gp~G~GK~~l 42 (319)
T PRK08769 28 GLLICGPEGLGKRAV 42 (319)
T ss_pred eEeeECCCCCCHHHH
Confidence 588999999999987
No 488
>PHA00729 NTP-binding motif containing protein
Probab=70.28 E-value=8 Score=40.43 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=14.0
Q ss_pred eEEEEecCCCcHHHH
Q 003593 296 IIYHCGPTNSGKTYN 310 (808)
Q Consensus 296 dvlv~apTGSGKTl~ 310 (808)
++++.|++|+|||+.
T Consensus 19 nIlItG~pGvGKT~L 33 (226)
T PHA00729 19 SAVIFGKQGSGKTTY 33 (226)
T ss_pred EEEEECCCCCCHHHH
Confidence 799999999999977
No 489
>CHL00095 clpC Clp protease ATP binding subunit
Probab=70.21 E-value=27 Score=43.72 Aligned_cols=130 Identities=22% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCeEEEEecCCCcHHHH--HHHHHHhcC--------cEEEEcccHHHH-------------HHHHHHHHHccccccccc
Q 003593 293 KRKIIYHCGPTNSGKTYN--ALQRFMEAK--------KGIYCSPLRLLA-------------MEVFDKVNALGVYCSLLT 349 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~--~L~~L~~~~--------~~lvl~Ptr~La-------------~Qi~~~l~~~g~~~~l~~ 349 (808)
...+++++||+|.|||.. .|...+..+ ..++..-.-.|. .++.+.+...+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~------- 271 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENN------- 271 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcC-------
Q ss_pred cccccccccCCeEEEeeecccCCCceeEEEEccchhhhcccch----hHHHHHHhhccccceeccCCchHHHHHHHHhhh
Q 003593 350 GQEKKLVPFSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRG----YAWTRALLGLMADEIHLCGDPSVLDVVRKICSE 425 (808)
Q Consensus 350 g~~~~~~~~~~~i~~t~e~l~~~~lv~~vVIDEAh~i~d~~~g----~~~~~~l~~l~~~~i~l~~s~~~~~~i~~l~~~ 425 (808)
-.+++|||+|.+...+.. ..-.-..-.+....+.+.+..+..+.-+-+...
T Consensus 272 -------------------------~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 272 -------------------------NIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred -------------------------CeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcC
Q ss_pred cCCCcEEEEeeecchhhhhHHHHHHHHhh
Q 003593 426 TGDELHEQHYERFKPLVVEAKTLLGDLRN 454 (808)
Q Consensus 426 ~~~~~~~~~~~r~~~~~~~~~~ll~~l~~ 454 (808)
..-..-.+.+.-..+...+...++..+..
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~l~~ 355 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFGLRS 355 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHHHHH
No 490
>PRK00131 aroK shikimate kinase; Reviewed
Probab=70.11 E-value=3.4 Score=40.47 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=16.9
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
..+..++++|++|||||+.
T Consensus 2 ~~~~~i~l~G~~GsGKstl 20 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTI 20 (175)
T ss_pred CCCCeEEEEcCCCCCHHHH
Confidence 3577899999999999998
No 491
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=70.08 E-value=5.2 Score=39.47 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=11.5
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
-.++.+++.|+.|+|||..
T Consensus 22 ~~~~~~ll~G~~G~GKT~l 40 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSL 40 (185)
T ss_dssp -----EEE-B-TTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4567899999999999987
No 492
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=70.01 E-value=5 Score=43.84 Aligned_cols=20 Identities=50% Similarity=0.617 Sum_probs=16.1
Q ss_pred CCeEEEEecCCCcHHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNALQ 313 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~ 313 (808)
.+-++++|||+||||-.++.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~ 22 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIA 22 (308)
T ss_pred ccEEEEECCCCcCHHHHHHH
Confidence 35689999999999977554
No 493
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=69.97 E-value=8.8 Score=47.60 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=16.2
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.|..++++||+|+|||..
T Consensus 348 ~g~~i~l~GppG~GKTtl 365 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSL 365 (784)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 567899999999999987
No 494
>PRK10865 protein disaggregation chaperone; Provisional
Probab=69.97 E-value=4.8 Score=50.50 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=22.1
Q ss_pred eEEEEecCCCcHHHH--HHHHHH-hcCcEEEEcccHHHH
Q 003593 296 IIYHCGPTNSGKTYN--ALQRFM-EAKKGIYCSPLRLLA 331 (808)
Q Consensus 296 dvlv~apTGSGKTl~--~L~~L~-~~~~~lvl~Ptr~La 331 (808)
.++++||||+|||+. +|...+ ..+..++.....++.
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 588999999999998 343333 333344444444443
No 495
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.96 E-value=7.6 Score=47.58 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=26.0
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCCeeEEEECCC---Ccccccc
Q 003593 487 IYGALPPETRRQQANLFNDQDNEFDVLVASDA---VGMGLNL 525 (808)
Q Consensus 487 lhg~l~~~~R~~~~~~F~~~~g~~~ILVATda---~~~GIDi 525 (808)
-+..|.+..+..+.+.|.. +-..-+|+..+- -+.|+|.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~-~~~~~~L~~h~~~~l~~~~~~~ 498 (767)
T PRK14723 458 ALRAMAQAVRAAVRRDVAA-ACDRYVLALHGTLALKVAGLPG 498 (767)
T ss_pred hHHHHhHhHHHHHHHHHHh-cccceEEEeecccccCCCCCCc
Confidence 3557778888888888875 455568887776 3456665
No 496
>PRK05541 adenylylsulfate kinase; Provisional
Probab=69.93 E-value=6.8 Score=38.86 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.8
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
-.+..++++|+.|||||+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~ 23 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTI 23 (176)
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 3567899999999999988
No 497
>PHA02533 17 large terminase protein; Provisional
Probab=69.62 E-value=20 Score=42.41 Aligned_cols=49 Identities=18% Similarity=0.050 Sum_probs=36.1
Q ss_pred CCCeEEEEecCCCcHHHHHH-HH----HH-hcCcEEEEcccHHHHHHHHHHHHHc
Q 003593 293 KRKIIYHCGPTNSGKTYNAL-QR----FM-EAKKGIYCSPLRLLAMEVFDKVNAL 341 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~~L-~~----L~-~~~~~lvl~Ptr~La~Qi~~~l~~~ 341 (808)
.+|-.++..+=..|||.++. .. +. .+..+++++|++.-|..+++.++..
T Consensus 73 ~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ 127 (534)
T PHA02533 73 KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQA 127 (534)
T ss_pred cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 46667788899999998822 12 22 2346788899999999999888753
No 498
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=69.61 E-value=9.2 Score=47.20 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.7
Q ss_pred CCCeEEEEecCCCcHHHH
Q 003593 293 KRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 293 ~grdvlv~apTGSGKTl~ 310 (808)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 356799999999999987
No 499
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=69.54 E-value=10 Score=39.78 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=16.4
Q ss_pred CCeEEEEecCCCcHHHHHHHH
Q 003593 294 RKIIYHCGPTNSGKTYNALQR 314 (808)
Q Consensus 294 grdvlv~apTGSGKTl~~L~~ 314 (808)
|...+++||.|+|||..+++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~l 21 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVL 21 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHH
Confidence 345789999999999885443
No 500
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=69.50 E-value=7.5 Score=43.06 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=17.0
Q ss_pred hCCCeEEEEecCCCcHHHH
Q 003593 292 MKRKIIYHCGPTNSGKTYN 310 (808)
Q Consensus 292 l~grdvlv~apTGSGKTl~ 310 (808)
-.+..|++.|+||+||++.
T Consensus 20 ~~~~pVLI~GE~GtGK~~l 38 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELI 38 (329)
T ss_pred CCCCCEEEECCCCChHHHH
Confidence 4567899999999999987
Done!