Query 003593
Match_columns 808
No_of_seqs 627 out of 4167
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 18:04:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003593.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1642-1646//hhsearch_pdb/003593hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rc3_A ATP-dependent RNA helic 1.0 1 1 604.3 43.0 581 177-765 40-636 (677)
2 1oyw_A RECQ helicase, ATP-depe 1.0 1 1 407.2 25.2 403 269-723 12-460 (523)
3 2v1x_A ATP-dependent DNA helic 1.0 1 1 403.0 24.6 419 269-734 31-518 (591)
4 2db3_A ATP-dependent RNA helic 1.0 1 1 350.7 31.7 292 269-577 66-407 (434)
5 3sqw_A ATP-dependent RNA helic 1.0 1 1 329.2 27.8 304 269-586 31-407 (579)
6 3i5x_A ATP-dependent RNA helic 1.0 1 1 327.6 29.4 303 269-585 82-457 (563)
7 3l9o_A ATP-dependent RNA helic 1.0 1 1 326.0 23.1 311 276-591 179-613 (1108)
8 3fmp_B ATP-dependent RNA helic 1.0 1 1 326.0 14.5 309 269-586 102-456 (479)
9 2i4i_A ATP-dependent RNA helic 1.0 1 1 325.1 27.0 298 269-582 25-388 (417)
10 2j0s_A ATP-dependent RNA helic 1.0 1 1 323.3 28.5 300 269-583 47-389 (410)
No 1
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=1.00 E-value=1 Score=604.29 Aligned_cols=581 Identities=41% Similarity=0.711 Sum_probs=502.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC--CCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 56899012899999997621034677678873208898888355678884202--9915888998709993123201024
Q 003593 177 GAKINRSDFEVLREVFRFFSNSGWAANQALAVYIGKSFFPTAAGKFRSYFIKK--CPDDVAQYLVWLGPSDDAVKFLFPI 254 (808)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~f~~~~~~~~~~~~~~i~~~~~p~~~~~f~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~p~ 254 (808)
..++++. ++..+++.|++.|++.....+.+++...+++...+|+.+|.+. ++.++...+.++......+..++|+
T Consensus 40 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 116 (677)
T 3rc3_A 40 TRPLDKN---EVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPF 116 (677)
T ss_dssp --CCCHH---HHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTTSSCGGGGHHH
T ss_pred EEECCHH---HHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCH
T ss_conf 5406468---9999999985068888878764865478899899999985325789930345788875046762113525
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 57420146826899999999979999976221168770998099990589837799999998259289993647789999
Q 003593 255 FVEFCIEEFPDEIKRFRAMIESADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEV 334 (808)
Q Consensus 255 f~~~~~~~fp~~l~~i~~~l~~~g~~~pt~~~~i~~~l~g~dviv~apTGSGKTl~~L~~L~~~~~~IvisPtR~LA~qi 334 (808)
|..+....||... ...+.....++..|.+|+|.++.++|++++++||||||||+.+++.+...+.++|++|||+||.|+
T Consensus 117 f~~~~~~~fp~~e-~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi 195 (677)
T 3rc3_A 117 FLRHAKQIFPVLD-CKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI 195 (677)
T ss_dssp HHHHHHHHCGGGG-CHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHH
T ss_pred HHHHHHHHCCCCC-CHHHHHHHHHCCCHHHHCHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHHHH
T ss_conf 7898885388867-799998776016806437777853998799986999779899999999659959991799999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCC----CCCEEEEEEECCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCCEECC
Q ss_conf 99998716434333364213434----67717871110367775007997241000003304689999830152311124
Q 003593 335 FDKVNALGVYCSLLTGQEKKLVP----FSNHIACTVEMVSTDEMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLC 410 (808)
Q Consensus 335 ~~~l~~~g~~~~l~~g~~~~~~~----~~~~i~~t~e~l~~~~~i~~iVIDEAh~i~d~~~g~~~~~il~~l~~~~~~l~ 410 (808)
++++++.|..+++++|+...... ...++.+|++++.....++++||||||++.+.+||+.|+.++.++++..++++
T Consensus 196 ~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il 275 (677)
T 3rc3_A 196 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLC 275 (677)
T ss_dssp HHHHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHCCCCEEEEECCEEEEECCCCCCCCEEEECHHHHHHCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 99999639918999898668705888652056813867422156889998166653785316899999970682223998
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 89118999999842129971898711036136648999999750389988999431689999999997249808997399
Q 003593 411 GDPSVLDVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAFSRREIFEVKMAIEKHTNHHCCVIYGA 490 (808)
Q Consensus 411 ~s~~~~~~i~~l~~~~~~~~~~~~~~r~~~l~~~~~~ll~~l~~~~~g~~II~fsr~~~~~l~~~L~~~~g~~v~~lhg~ 490 (808)
+.++..+.+..+....+....+..+.+..++...... +..+.....|++|+|+++++++.++..|.+. ++.+.++||+
T Consensus 276 ~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~~~~-l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~-g~~v~~lHG~ 353 (677)
T 3rc3_A 276 GEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHA-LESLDNLRPGDCIVCFSKNDIYSVSRQIEIR-GLESAVIYGS 353 (677)
T ss_dssp ECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEECSSC-CCSGGGCCTTEEEECSSHHHHHHHHHHHHHT-TCCCEEECTT
T ss_pred ECCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 4230399999999755986599974203247888888-9999845899789984799999999999855-8871641004
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCC----C-CCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999997369999019997788864224683389990886678----9-9665579868999968248899999
Q 003593 491 LPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLNIRRVVFYSLSKYN----G-DKIIPVPGSQVKQIAGRAGRRGSIY 565 (808)
Q Consensus 491 l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GIDipV~~VI~~d~~K~d----g-~~~~P~s~~~y~Qr~GRAGR~G~~~ 565 (808)
|++++|..+++.|+.+.|.++|||||+++++|||++|++||++++.||+ | .+.+|.+.++|+||+|||||.|...
T Consensus 354 L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g 433 (677)
T 3rc3_A 354 LPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRF 433 (677)
T ss_dssp SCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSC
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 89999999999987048973899967687777076754899877641233567763423089999999961878898999
Q ss_pred CCEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 95499999629998999996299046687078882899999985136210999999997422367874457930699999
Q 003593 566 PDGLTTTLNLDDLDYLIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENCRLDGSYFLCRHDHIKKVA 645 (808)
Q Consensus 566 ~~G~ai~l~~~d~~~~~~~l~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~~~~~~~~~~~~c~~~~~~~ia 645 (808)
..|.|+.++..+...+.+++....+++.+.++.|...+++.+....+......++..|.+....+..|++|+.++...++
T Consensus 434 ~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~l~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la 513 (677)
T 3rc3_A 434 KEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSA 513 (677)
T ss_dssp SSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHH
T ss_pred CCEEEEEEECCHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHH
T ss_conf 98799997450289999997258503465367871999999841388315999999999862346253014668799999
Q ss_pred HHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9998810899243421048997877258999999999670279337842-----27899898872469999988667655
Q 003593 646 NMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSKNAPVSIA-----MGMPKGSAKNDAELLDLETKHQVLSM 720 (808)
Q Consensus 646 ~~l~~i~~l~l~d~~~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~v~il-----~~~p~~~~~~~~~l~~lE~~~~~l~~ 720 (808)
++++++ +|++.+++.||++|++.+++..+.++..|++.|+.+.++.+- .++|..+..+..+|..||..|+.+++
T Consensus 514 ~~l~~~-~L~~~~~~~f~~aP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~ 592 (677)
T 3rc3_A 514 ELIQHI-PLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDL 592 (677)
T ss_dssp HHTTTS-CCCHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 998508-9997877545868989898899999999999997489878788751347777888788999999999999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 333211158666885479999999999999986500688412232
Q 003593 721 YLWLSHQFKEEVFPYAKKAEAMATDIAELLGQSLTNANWKPESRQ 765 (808)
Q Consensus 721 y~wLs~r~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 765 (808)
|+|||+||| +.|||.+.+++++..++..|++.|.+...--+...
T Consensus 593 y~wls~r~~-~~f~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 636 (677)
T 3rc3_A 593 YLWLSYRFM-DMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSE 636 (677)
T ss_dssp HHHHHTTCT-TTSTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999986465-65899999999999999999999999999986324
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=1.00 E-value=1 Score=407.20 Aligned_cols=403 Identities=17% Similarity=0.194 Sum_probs=293.6
Q ss_pred HHHHHHHH-CCCCCCCCHH--HHHHHHCCCEEEEEECCCCCHHHH-HHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999997-9999976221--168770998099990589837799-9999982592899936477899999999871643
Q 003593 269 RFRAMIES-ADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 269 ~i~~~l~~-~g~~~pt~~~--~i~~~l~g~dviv~apTGSGKTl~-~L~~L~~~~~~IvisPtR~LA~qi~~~l~~~g~~ 344 (808)
.+.+.++. .||..|+++| .+..++.|+|+++++|||+|||++ +++++...+.+||++|+++|+.|+++.+..+|+.
T Consensus 12 ~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~gi~ 91 (523)
T 1oyw_A 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVA 91 (523)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999729999999999999999829999999999967999999999981897999898699999999999976995
Q ss_pred CCCCCCCCCCCC----------CCCCEEEEEEECCCCC--------CCEEEEEECCCHHHHCCCCHHHHHHHHHHC----
Q ss_conf 433336421343----------4677178711103677--------750079972410000033046899998301----
Q 003593 345 CSLLTGQEKKLV----------PFSNHIACTVEMVSTD--------EMYDVAVIDEIQMMSDACRGYAWTRALLGL---- 402 (808)
Q Consensus 345 ~~l~~g~~~~~~----------~~~~~i~~t~e~l~~~--------~~i~~iVIDEAh~i~d~~~g~~~~~il~~l---- 402 (808)
+..+++...... .....+++||+.+... ..++++||||||++++ ||++|+..+..+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~--~g~~fr~~~~~l~~l~ 169 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ--WGHDFRPEYAALGQLR 169 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT--TSSCCCHHHHGGGGHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHHCHHHHHHHHHCCCCEEEEECCCCCCC--CCCCCHHHHHHHHHHH
T ss_conf 89994889989999999997569988899897997175799987318978899838626676--7886479999999999
Q ss_pred ---CCC-CEECCCCCHH--HHHHHHHHHHCCCCCEEEEEEECC------HHHHHHHHHHHHHHHCCCCCEEEEE-CHHHH
Q ss_conf ---523-1112489118--999999842129971898711036------1366489999997503899889994-31689
Q 003593 403 ---MAD-EIHLCGDPSV--LDVVRKICSETGDELHEQHYERFK------PLVVEAKTLLGDLRNVRSGDCVVAF-SRREI 469 (808)
Q Consensus 403 ---~~~-~~~l~~s~~~--~~~i~~l~~~~~~~~~~~~~~r~~------~l~~~~~~ll~~l~~~~~g~~II~f-sr~~~ 469 (808)
+.. .+.++++++. ...+...............+.+.+ +.......++..+.....+..|||+ +++.+
T Consensus 170 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~ 249 (523)
T 1oyw_A 170 QRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV 249 (523)
T ss_dssp HHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHH
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 86789878999678997899999998389997499689999955899985787899999999966899489994978999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCH
Q ss_conf 999999997249808997399999999999999736999901999778886422468-3389990886678996655798
Q 003593 470 FEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPG 548 (808)
Q Consensus 470 ~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GIDip-V~~VI~~d~~K~dg~~~~P~s~ 548 (808)
+.++..|... |+.+..|||++++++|..+++.|++ |+.+|||||++++||||+| |++|||+++ |.+.
T Consensus 250 e~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~vlVaT~a~~~GiD~p~v~~VI~~~~---------p~s~ 317 (523)
T 1oyw_A 250 EDTAARLQSK-GISAAAYHAGLENNVRADVQEKFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI---------PRNI 317 (523)
T ss_dssp HHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECTTSCTTTCCTTCCEEEESSC---------CSSH
T ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHC--CCCEEEEEECHHHCCCCCCCCCEEEEECC---------CCCH
T ss_conf 9999999877-9978986177999999999999974--99749999525417987667548999799---------9999
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEEECCCHHH-HHHHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 68999968248899999954999996299989-99996299046687078882899999985136210999999997422
Q 003593 549 SQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDY-LIECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYTFCQLLEKFGENC 627 (808)
Q Consensus 549 ~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d~~~-~~~~l~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~ll~~f~~~~ 627 (808)
++|+||+|||||+|. .|.|++|+++++.. +..++.....+..+......+..|..|+.. ..|++..++.||++..
T Consensus 318 ~~y~Qr~GRaGR~g~---~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~~~-~~crr~~l~~~f~e~~ 393 (523)
T 1oyw_A 318 ESYYQETGRAGRDGL---PAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEA-QTCRRLVLLNYFGEGR 393 (523)
T ss_dssp HHHHHHHTTSCTTSS---CEEEEEEECHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHTC-SSCHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCCCCC---CCEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCCCCC
T ss_conf 999999661667999---725999717889999999985668499999999999999999843-5468661486559988
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 36787445793069999999988108992434210489978772-----5899999999967027933784227899898
Q 003593 628 RLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRD-----PKAMYHLLRFASSYSKNAPVSIAMGMPKGSA 702 (808)
Q Consensus 628 ~~~~~~~~c~~~~~~~ia~~l~~i~~l~l~d~~~~c~~p~~~~~-----~~~~~~~~~~~~~~~~~~~v~il~~~p~~~~ 702 (808)
. ..|+ +|++|..|....| +++++++.+.+++|+.+..+++++|...
T Consensus 394 ~-----~~c~---------------------~cd~c~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~--- 444 (523)
T 1oyw_A 394 Q-----EPCG---------------------NCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANN--- 444 (523)
T ss_dssp C-----SCCS---------------------CBHHHHSCCCEEECHHHHHHHHHHHHHTTTCCCHHHHHHHHHTCCC---
T ss_pred C-----CCCC---------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC---
T ss_conf 8-----8999---------------------9988899864416439999999999986458671142787648985---
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 872469999988667655333
Q 003593 703 KNDAELLDLETKHQVLSMYLW 723 (808)
Q Consensus 703 ~~~~~l~~lE~~~~~l~~y~w 723 (808)
+.+. +..|+.++.|+.
T Consensus 445 ---~~~~--~~~~~~~~~~~~ 460 (523)
T 1oyw_A 445 ---QRIR--DYGHDKLKVYGM 460 (523)
T ss_dssp ---HHHH--HHTGGGSTTTTT
T ss_pred ---HHHH--HHCCCCCCCCCC
T ss_conf ---7678--614243665565
No 3
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=1.00 E-value=1 Score=402.96 Aligned_cols=419 Identities=16% Similarity=0.179 Sum_probs=297.7
Q ss_pred HHHHHHHH-CCCCCCCCHH--HHHHHHCCCEEEEEECCCCCHHHH-HHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999997-9999976221--168770998099990589837799-9999982592899936477899999999871643
Q 003593 269 RFRAMIES-ADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYN-ALQRFMEAKKGIYCSPLRLLAMEVFDKVNALGVY 344 (808)
Q Consensus 269 ~i~~~l~~-~g~~~pt~~~--~i~~~l~g~dviv~apTGSGKTl~-~L~~L~~~~~~IvisPtR~LA~qi~~~l~~~g~~ 344 (808)
.+.++++. .||..|+++| .+..++.|+|+++++|||+|||++ +++++...+.+||++|+++||.|+++.+.++|+.
T Consensus 31 ~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~gi~ 110 (591)
T 2v1x_A 31 KVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGIS 110 (591)
T ss_dssp HHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCC
T ss_conf 99999999739899999999999999849998999799870999999999976992999968799999999999966995
Q ss_pred CCCCCCCCCCC------------CCCCCEEEEEEECCCCC-------------CCEEEEEECCCHHHHCCCCHHHHHHHH
Q ss_conf 43333642134------------34677178711103677-------------750079972410000033046899998
Q 003593 345 CSLLTGQEKKL------------VPFSNHIACTVEMVSTD-------------EMYDVAVIDEIQMMSDACRGYAWTRAL 399 (808)
Q Consensus 345 ~~l~~g~~~~~------------~~~~~~i~~t~e~l~~~-------------~~i~~iVIDEAh~i~d~~~g~~~~~il 399 (808)
+..++|..... .....++++||+.+... ..++++||||||++++ ||++|+..+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~--~g~dfr~~~ 188 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQ--WGHDFRPDY 188 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGST--TCTTCCGGG
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CCCCCHHHH
T ss_conf 899968999999999999865126888789988467544199999998444206876899988422442--465418999
Q ss_pred HH------CCCCCEE--CCCCCH--HHHHHHHHHHHCCCCCEEEEEEEC--------CH--HHHHHHHHHHHHHHC-CCC
Q ss_conf 30------1523111--248911--899999984212997189871103--------61--366489999997503-899
Q 003593 400 LG------LMADEIH--LCGDPS--VLDVVRKICSETGDELHEQHYERF--------KP--LVVEAKTLLGDLRNV-RSG 458 (808)
Q Consensus 400 ~~------l~~~~~~--l~~s~~--~~~~i~~l~~~~~~~~~~~~~~r~--------~~--l~~~~~~ll~~l~~~-~~g 458 (808)
.. ..+.... ++++++ +...+...........+...+.+. .+ .......++..+... ..+
T Consensus 189 ~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~ 268 (591)
T 2v1x_A 189 KALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQ 268 (591)
T ss_dssp GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998589986899945798899999999838998689846777766579999678757999999999999744588
Q ss_pred CEEEEE-CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEEECCC
Q ss_conf 889994-31689999999997249808997399999999999999736999901999778886422468-3389990886
Q 003593 459 DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLS 536 (808)
Q Consensus 459 ~~II~f-sr~~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GIDip-V~~VI~~d~~ 536 (808)
..|||+ +++.++.++..|... |+.+..|||+|++++|..+++.|+. |+.+|||||++++||||+| |++|||+++
T Consensus 269 ~~IVf~~sr~~~e~la~~L~~~-g~~~~~~h~~l~~~~R~~~~~~F~~--g~~~VlVAT~a~~~GID~p~V~~VI~~~~- 344 (591)
T 2v1x_A 269 SGIIYCFSQKDSEQVTVSLQNL-GIHAGAYHANLEPEDKTTVHRKWSA--NEIQVVVATVAFGMGIDKPDVRFVIHHSM- 344 (591)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHT--TSSSEEEECTTSCTTCCCSCEEEEEESSC-
T ss_pred CEEEEECCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHC--CCCEEEEEECHHHCCCCCCCCCEEEEECC-
T ss_conf 7699967689999999999977-9978984698799999999999976--99839998453306877436658999699-
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHH-HHHCCCCHHHHHHCCCCCHHHHHHHHHHCCCCC
Q ss_conf 6789966557986899996824889999995499999629998999-996299046687078882899999985136210
Q 003593 537 KYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI-ECLKQPFEVVKKVGLFPFFEQVELFAGQLSNYT 615 (808)
Q Consensus 537 K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d~~~~~-~~l~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~ 615 (808)
|.++++|+||+|||||+|. .|.|++|++..+.... .++...... ...+..|..||.....|+
T Consensus 345 --------p~s~~~y~Qr~GRaGR~G~---~g~~i~l~~~~D~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~Cr 407 (591)
T 2v1x_A 345 --------SKSMENYYQESGRAGRDDM---KADCILYYGFGDIFRISSMVVMENVG------QQKLYEMVSYCQNISKCR 407 (591)
T ss_dssp --------CSSHHHHHHHHTTSCTTSS---CEEEEEEECHHHHHHHHHHTTTSTTH------HHHHHHHHHHHTCSSSCH
T ss_pred --------CCCHHHHHHHHCCCCCCCC---CCEEEEEECHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHCCCCCH
T ss_conf --------9999999898540776999---86599997768889999998534665------899999999875556528
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCC--CCC-----HHHHHHHHH---HHHHC
Q ss_conf 99999999742236787445793069999999988108992434210489978--772-----589999999---99670
Q 003593 616 FCQLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVN--IRD-----PKAMYHLLR---FASSY 685 (808)
Q Consensus 616 ~~~ll~~f~~~~~~~~~~~~c~~~~~~~ia~~l~~i~~l~l~d~~~~c~~p~~--~~~-----~~~~~~~~~---~~~~~ 685 (808)
+..++.||++.... ..|+ ..|++|..|.+ ..| +++++++.+ ..++|
T Consensus 408 r~~ll~~f~e~~~~----~~c~--------------------~~Cd~C~~~~~~~~~d~~~~~~~~l~~v~~~~~~~~~~ 463 (591)
T 2v1x_A 408 RVLMAQHFDEVWNS----EACN--------------------KMCDNCCKDSAFERKNITEYCRDLIKILKQAEELNEKL 463 (591)
T ss_dssp HHHHHHHHTCCC-------CCC--------------------SCBHHHHCCCCEEEEECHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCCCC----CCCC--------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999980998886----6547--------------------89989999986543566899999999999987417864
Q ss_pred CCCCEEEEECCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 27933784227899898------87246999998866765533321115866688
Q 003593 686 SKNAPVSIAMGMPKGSA------KNDAELLDLETKHQVLSMYLWLSHQFKEEVFP 734 (808)
Q Consensus 686 ~~~~~v~il~~~p~~~~------~~~~~l~~lE~~~~~l~~y~wLs~r~~~~~f~ 734 (808)
+.+..+++++|..+... ..+..-..++.+...|-.-++|...+....|+
T Consensus 464 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 518 (591)
T 2v1x_A 464 TPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYA 518 (591)
T ss_dssp CHHHHHHHHTTCSCGGGCCTTCCCCSCCHHHHHHHHHHHHHTTSEEEEEEECSSC
T ss_pred CHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 5899999992887257886499967599999999999999869837725467876
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=350.71 Aligned_cols=292 Identities=17% Similarity=0.220 Sum_probs=225.9
Q ss_pred HHHHHHHHCCCCCCCCHH--HHHHHHCCCEEEEEECCCCCHHHHHHHHHHH------------CCCEEEECCCHHHHHHH
Q ss_conf 999999979999976221--1687709980999905898377999999982------------59289993647789999
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME------------AKKGIYCSPLRLLAMEV 334 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~g~dviv~apTGSGKTl~~L~~L~~------------~~~~IvisPtR~LA~qi 334 (808)
.+++++++.||..|+++| +++.++.|+|++++||||||||++++.+++. ++.+||++|||+||.|+
T Consensus 66 ~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~ 145 (434)
T 2db3_A 66 IIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQI 145 (434)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 99999997699999989999999996699889987899982399999999999844532135896489993489999999
Q ss_pred HHHHHHCCCC----CCCCCCCCCCC------CCCCCEEEEEEECCC----C----CCCEEEEEECCCHHHHCCCCHHHHH
Q ss_conf 9999871643----43333642134------346771787111036----7----7750079972410000033046899
Q 003593 335 FDKVNALGVY----CSLLTGQEKKL------VPFSNHIACTVEMVS----T----DEMYDVAVIDEIQMMSDACRGYAWT 396 (808)
Q Consensus 335 ~~~l~~~g~~----~~l~~g~~~~~------~~~~~~i~~t~e~l~----~----~~~i~~iVIDEAh~i~d~~~g~~~~ 396 (808)
++.+.+++.. +.++.|..... .....++++|++.+. . ...++++|+||||++.+++|+..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~ 225 (434)
T 2db3_A 146 FNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMR 225 (434)
T ss_dssp HHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCHHHHH
T ss_conf 99999973347867999978888789999850699899987489999997288563327768875176663067199999
Q ss_pred HHHHHC--CCCCEECCCCCHHHHHHHHHHHHCCCCC--------------EEEEEEECCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 998301--5231112489118999999842129971--------------898711036136648999999750389988
Q 003593 397 RALLGL--MADEIHLCGDPSVLDVVRKICSETGDEL--------------HEQHYERFKPLVVEAKTLLGDLRNVRSGDC 460 (808)
Q Consensus 397 ~il~~l--~~~~~~l~~s~~~~~~i~~l~~~~~~~~--------------~~~~~~r~~~l~~~~~~ll~~l~~~~~g~~ 460 (808)
.++..+ +...+.+++++|+...+..++....... +.+.+..... ..+...++..+..... .+
T Consensus 226 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~l~~~~~-~~ 303 (434)
T 2db3_A 226 RIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKRSKLIEILSEQAD-GT 303 (434)
T ss_dssp HHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHHHHHHHHHHHCCT-TE
T ss_pred HHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHHCCC-CE
T ss_conf 999725789885699995568989999999864698899953566666653369999371-7779999999985799-87
Q ss_pred EEEE-CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEEECCCCC
Q ss_conf 9994-31689999999997249808997399999999999999736999901999778886422468-338999088667
Q 003593 461 VVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKY 538 (808)
Q Consensus 461 II~f-sr~~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GIDip-V~~VI~~d~~K~ 538 (808)
+||+ +++.+..++..|.+. |+.+..+||++++++|..+++.|+. |+.+|||||+++++|||+| |++||+|++
T Consensus 304 lVF~~t~~~a~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~v~~rGlDi~~v~~VI~~d~--- 377 (434)
T 2db3_A 304 IVFVETKRGADFLASFLSEK-EFPTTSIHGDRLQSQREQALRDFKN--GSMKVLIATSVASRGLDIKNIKHVINYDM--- 377 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHT-TCCEEEESTTSCHHHHHHHHHHHHT--SSCSEEEECGGGTSSCCCTTCCEEEESSC---
T ss_pred EEEEECCHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHC--CCCCEEEECHHHHCCCCCCCCCEEEEECC---
T ss_conf 99994718999999999867-9987998499999999999999985--99939998206457788324898999789---
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 899665579868999968248899999954999996299
Q 003593 539 NGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDD 577 (808)
Q Consensus 539 dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d 577 (808)
|.+.++|+||+|||||.|. .|.|++|++++
T Consensus 378 ------p~~~~~y~qriGR~gR~g~---~G~a~~~~~~~ 407 (434)
T 2db3_A 378 ------PSKIDDYVHRIGRTGRVGN---NGRATSFFDPE 407 (434)
T ss_dssp ------CSSHHHHHHHHTTSSCTTC---CEEEEEEECTT
T ss_pred ------CCCHHHHHHHHCCCCCCCC---CCEEEEEEECC
T ss_conf ------9998899998160655899---87799998064
No 5
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=329.25 Aligned_cols=304 Identities=15% Similarity=0.160 Sum_probs=221.6
Q ss_pred HHHHHHHHCCCCCCCCHH--HHHHHH--CCCEEEEEECCCCCHHHHHHHHHHH-----------CCCEEEECCCHHHHHH
Q ss_conf 999999979999976221--168770--9980999905898377999999982-----------5928999364778999
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVM--KRKIIYHCGPTNSGKTYNALQRFME-----------AKKGIYCSPLRLLAME 333 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l--~g~dviv~apTGSGKTl~~L~~L~~-----------~~~~IvisPtR~LA~q 333 (808)
.+++++...||..|+++| +++.++ .+++++++||||||||++++.+++. .+.+||++|||+||.|
T Consensus 31 ~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q 110 (579)
T 3sqw_A 31 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQ 110 (579)
T ss_dssp HHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 99999997799999999999999998059983999837986799999999999998413356689769998251999999
Q ss_pred HHHHHHHCCC--------CC-CCCCCCCCCCC------CCCCEEEEEEECCCC---------CCCEEEEEECCCHHHHCC
Q ss_conf 9999987164--------34-33336421343------467717871110367---------775007997241000003
Q 003593 334 VFDKVNALGV--------YC-SLLTGQEKKLV------PFSNHIACTVEMVST---------DEMYDVAVIDEIQMMSDA 389 (808)
Q Consensus 334 i~~~l~~~g~--------~~-~l~~g~~~~~~------~~~~~i~~t~e~l~~---------~~~i~~iVIDEAh~i~d~ 389 (808)
+++.+.+++. .+ .+.+|...... ....++++|++.+.. ...++++||||||+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~ 190 (579)
T 3sqw_A 111 IEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 190 (579)
T ss_dssp HHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHCC
T ss_conf 99999999854346666379999899067999999845999999989899999998455434133889999883776447
Q ss_pred CCHHHHHHHHHHCCC-------CCEECCCCCHHHHHHHHHHHHCCCCCEE------------------EEEEECCHHHH-
Q ss_conf 304689999830152-------3111248911899999984212997189------------------87110361366-
Q 003593 390 CRGYAWTRALLGLMA-------DEIHLCGDPSVLDVVRKICSETGDELHE------------------QHYERFKPLVV- 443 (808)
Q Consensus 390 ~~g~~~~~il~~l~~-------~~~~l~~s~~~~~~i~~l~~~~~~~~~~------------------~~~~r~~~l~~- 443 (808)
+|..++..++..++. ..+.++.++|....+..+.......... +.+........
T Consensus 191 gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 270 (579)
T 3sqw_A 191 GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 270 (579)
T ss_dssp TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf 87999999998745531146567459999356886899999997699825999605766655403431599994422655
Q ss_pred ---HHHHHHHHHHH-CCCCCEEEEE-CHHHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf ---48999999750-3899889994-3168999999999724--980899739999999999999973699990199977
Q 003593 444 ---EAKTLLGDLRN-VRSGDCVVAF-SRREIFEVKMAIEKHT--NHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516 (808)
Q Consensus 444 ---~~~~ll~~l~~-~~~g~~II~f-sr~~~~~l~~~L~~~~--g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVAT 516 (808)
....+...+.. ...+.+|||+ ++..+..++..|.+.. ++.+..+||+|++++|..+++.|+. |+.+|||||
T Consensus 271 ~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLVaT 348 (579)
T 3sqw_A 271 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCT 348 (579)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf 999999999998613789838998892899999999998752479727984188999999999998635--887199981
Q ss_pred CCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHC
Q ss_conf 8886422468-338999088667899665579868999968248899999954999996299989999962
Q 003593 517 DAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECLK 586 (808)
Q Consensus 517 dv~~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d~~~~~~~l~ 586 (808)
+++++|||+| |++||++++ |.+.+.|+||+|||||.|. .|.|++|+.+++..+.+.+.
T Consensus 349 ~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~---~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 349 DVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGK---EGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp GGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTC---CEEEEEEEEGGGHHHHHHHH
T ss_pred CHHHCCCCCCCCCEEEECCC---------CCCHHHHHHHCCCCCCCCC---CCEEEEEECCCHHHHHHHHH
T ss_conf 44545887356878998189---------9987776532264455899---73299997241899999999
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=1.00 E-value=1 Score=327.56 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=220.0
Q ss_pred HHHHHHHHCCCCCCCCHH--HHHHHH--CCCEEEEEECCCCCHHHHHHHHHHH----C-------CCEEEECCCHHHHHH
Q ss_conf 999999979999976221--168770--9980999905898377999999982----5-------928999364778999
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVM--KRKIIYHCGPTNSGKTYNALQRFME----A-------KKGIYCSPLRLLAME 333 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l--~g~dviv~apTGSGKTl~~L~~L~~----~-------~~~IvisPtR~LA~q 333 (808)
.+++++...||..|+++| +++.++ .++|++++||||||||++++.+++. . +++||++||++||.|
T Consensus 82 ~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q 161 (563)
T 3i5x_A 82 EIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQ 161 (563)
T ss_dssp HHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHH
T ss_conf 99999997799999999999999996679972999878999742999999999987423466677049998284999999
Q ss_pred HHHHHHHCC-----C---CCC-CCCCCCCCC------CCCCCEEEEEEECCC---------CCCCEEEEEECCCHHHHCC
Q ss_conf 999998716-----4---343-333642134------346771787111036---------7775007997241000003
Q 003593 334 VFDKVNALG-----V---YCS-LLTGQEKKL------VPFSNHIACTVEMVS---------TDEMYDVAVIDEIQMMSDA 389 (808)
Q Consensus 334 i~~~l~~~g-----~---~~~-l~~g~~~~~------~~~~~~i~~t~e~l~---------~~~~i~~iVIDEAh~i~d~ 389 (808)
+++.+.++. . .+. +.+|..... .....++++|++.+. ....++++||||||+++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~ 241 (563)
T 3i5x_A 162 IEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 241 (563)
T ss_dssp HHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCC
T ss_conf 99999999742356676049999899077999999746899989989299999998344111255109998377877505
Q ss_pred CCHHHHHHHHHHCCC-------CCEECCCCCHHHHHHHHHHHHCCCCCEE------------------EEEEECCHHHH-
Q ss_conf 304689999830152-------3111248911899999984212997189------------------87110361366-
Q 003593 390 CRGYAWTRALLGLMA-------DEIHLCGDPSVLDVVRKICSETGDELHE------------------QHYERFKPLVV- 443 (808)
Q Consensus 390 ~~g~~~~~il~~l~~-------~~~~l~~s~~~~~~i~~l~~~~~~~~~~------------------~~~~r~~~l~~- 443 (808)
+|+.++..++..++. ..+.++.++|....+..+.......... +.+........
T Consensus 242 ~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (563)
T 3i5x_A 242 GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS 321 (563)
T ss_dssp TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCHHHHH
T ss_conf 50999999998611103567667559999816887899999986388761787415777755210375489987226766
Q ss_pred ---HHHHHHHHHHH-CCCCCEEEEE-CHHHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf ---48999999750-3899889994-316899999999972--4980899739999999999999973699990199977
Q 003593 444 ---EAKTLLGDLRN-VRSGDCVVAF-SRREIFEVKMAIEKH--TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 516 (808)
Q Consensus 444 ---~~~~ll~~l~~-~~~g~~II~f-sr~~~~~l~~~L~~~--~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVAT 516 (808)
....+...+.. ...+.+|||+ +++.+..++..|.+. .++.+..+||++++++|..+++.|+. |+.+|||||
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLvaT 399 (563)
T 3i5x_A 322 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCT 399 (563)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHC--CCCCEEEEC
T ss_conf 999999999998613788728999481799999999998742479608982588999999999999866--899889983
Q ss_pred CCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 8886422468-33899908866789966557986899996824889999995499999629998999996
Q 003593 517 DAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIECL 585 (808)
Q Consensus 517 dv~~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d~~~~~~~l 585 (808)
+++++|||+| |++||++++ |.+..+|+||+|||||.|. .|.|++|+.+++..+.+.+
T Consensus 400 ~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~---~g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 400 DVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGK---EGSSVLFICKDELPFVREL 457 (563)
T ss_dssp GGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTC---CEEEEEEEEGGGHHHHHHH
T ss_pred CHHHCCCCCCCCCEEEEECC---------CCCHHHHHHHCCCCCCCCC---CCEEEEEECHHHHHHHHHH
T ss_conf 66646898426777999799---------9964246464272356999---8539999750488999999
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=326.05 Aligned_cols=311 Identities=18% Similarity=0.231 Sum_probs=227.1
Q ss_pred HCCCCCCCCH--HHHHHHHCCCEEEEEECCCCCHHHHHHHHHH----HCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7999997622--1168770998099990589837799999998----259289993647789999999987164343333
Q 003593 276 SADLTKPHTW--FPFARVMKRKIIYHCGPTNSGKTYNALQRFM----EAKKGIYCSPLRLLAMEVFDKVNALGVYCSLLT 349 (808)
Q Consensus 276 ~~g~~~pt~~--~~i~~~l~g~dviv~apTGSGKTl~~L~~L~----~~~~~IvisPtR~LA~qi~~~l~~~g~~~~l~~ 349 (808)
..++..|+++ .+++.++.|++++++||||||||++++.++. .++++||++|||+||.|++.++..+...+++++
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgllt 258 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 258 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEEC
T ss_pred HHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 84799999999999999976998899889999719999999999975597499990849999999999999828921896
Q ss_pred CCCCCCCCCCCEEEEEEECCCC----C----CCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCCEECCCCCHHH---HH
Q ss_conf 6421343467717871110367----7----75007997241000003304689999830152311124891189---99
Q 003593 350 GQEKKLVPFSNHIACTVEMVST----D----EMYDVAVIDEIQMMSDACRGYAWTRALLGLMADEIHLCGDPSVL---DV 418 (808)
Q Consensus 350 g~~~~~~~~~~~i~~t~e~l~~----~----~~i~~iVIDEAh~i~d~~~g~~~~~il~~l~~~~~~l~~s~~~~---~~ 418 (808)
|+.... ....++++|++++.. . ..+++|||||||++.+.+|+..|..++..++...+.++.++|+. .+
T Consensus 259 Gd~~~~-~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~ 337 (1108)
T 3l9o_A 259 GDITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEF 337 (1108)
T ss_dssp SSCBCC-CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHH
T ss_pred CCCCCC-CCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
T ss_conf 765268-9999899676999999974754322378998700212023006899999998647776499972888987999
Q ss_pred HHHHHHHCCCC-----------CEEEEEEECC------------H------------H----------------------
Q ss_conf 99984212997-----------1898711036------------1------------3----------------------
Q 003593 419 VRKICSETGDE-----------LHEQHYERFK------------P------------L---------------------- 441 (808)
Q Consensus 419 i~~l~~~~~~~-----------~~~~~~~r~~------------~------------l---------------------- 441 (808)
...+....... ...+.+.... . +
T Consensus 338 a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 417 (1108)
T 3l9o_A 338 AEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYK 417 (1108)
T ss_dssp HHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99998515898279834787554068986247764256414422011566899999987541133211234332222344
Q ss_pred --------HHHHHHHHHHHHHCCCCCEEEEE-CHHHHHHHHHHHHHH---------------------------------
Q ss_conf --------66489999997503899889994-316899999999972---------------------------------
Q 003593 442 --------VVEAKTLLGDLRNVRSGDCVVAF-SRREIFEVKMAIEKH--------------------------------- 479 (808)
Q Consensus 442 --------~~~~~~ll~~l~~~~~g~~II~f-sr~~~~~l~~~L~~~--------------------------------- 479 (808)
......++..+.....+.+|||+ +++.|+.++..|...
T Consensus 418 ~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 497 (1108)
T 3l9o_A 418 GGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 497 (1108)
T ss_dssp -------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 55544320568999999999628998899958487899999999864699777899999999988750464433005688
Q ss_pred -----CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf -----49808997399999999999999736999901999778886422468-338999088667899665579868999
Q 003593 480 -----TNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQ 553 (808)
Q Consensus 480 -----~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GIDip-V~~VI~~d~~K~dg~~~~P~s~~~y~Q 553 (808)
....+.++||+|++.+|..+++.|+. |.++|||||+++++|||+| +++||+++. +||+...+|.+..+|+|
T Consensus 498 ~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~--G~ikVLVAT~vla~GIDiP~v~~VI~~~~-~~d~~~~r~iS~~eyiQ 574 (1108)
T 3l9o_A 498 HILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVR-KWDGQQFRWVSGGEYIQ 574 (1108)
T ss_dssp HHTHHHHHTEEEECSCSCHHHHHHHHHHHHH--TCCCEEEEESCCCSCCCC--CEEEESCSE-EESSSCEEECCHHHHHH
T ss_pred HHHHHHHCCEEEECCCCCHHHHHHHHHHHHC--CCCEEEEECCHHHCCCCCCCCEEEEECCC-CCCCCCCCCCCHHHHHH
T ss_conf 7877651575652589989999999999867--99849998727765778787459996576-66864456389999997
Q ss_pred HHCCCCCCCCCCCCEEEEEEECC--CHHHHHHHHCCCCHH
Q ss_conf 96824889999995499999629--998999996299046
Q 003593 554 IAGRAGRRGSIYPDGLTTTLNLD--DLDYLIECLKQPFEV 591 (808)
Q Consensus 554 r~GRAGR~G~~~~~G~ai~l~~~--d~~~~~~~l~~~~~~ 591 (808)
|+|||||.|. ...|.|+.++.+ +...+.+++.....+
T Consensus 575 r~GRAGR~G~-d~~G~~ill~~~~~~~~~~~~l~~~~~~~ 613 (1108)
T 3l9o_A 575 MSGRAGRRGL-DDRGIVIMMIDEKMEPQVAKGMVKGQADR 613 (1108)
T ss_dssp HHHHSCCSSS-CSSEEEEEEECCCCCHHHHHHHHHCCCCC
T ss_pred HHCCCCCCCC-CCCEEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 6363477899-98559999955886899999996199963
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=326.03 Aligned_cols=309 Identities=15% Similarity=0.168 Sum_probs=221.5
Q ss_pred HHHHHHHHCCCCCCCCHH--HHHHHHCC--CEEEEEECCCCCHHHHHHHHHHH-------CCCEEEECCCHHHHHHHHHH
Q ss_conf 999999979999976221--16877099--80999905898377999999982-------59289993647789999999
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKR--KIIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRLLAMEVFDK 337 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~g--~dviv~apTGSGKTl~~L~~L~~-------~~~~IvisPtR~LA~qi~~~ 337 (808)
.+++++..+||..|+++| +++.++.+ ++++++||||||||++++.+++. .+++||++|+++||.|+++.
T Consensus 102 ~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~ 181 (479)
T 3fmp_B 102 QLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKV 181 (479)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 99999997599999989999999997489985899857998351999999999876347887479993839999999999
Q ss_pred HHHCCCCC-----CCCCCCCC--CCC-CCCCEEEEEEECC-----CCC----CCEEEEEECCCHHHHC-CCCHHHHHHHH
Q ss_conf 98716434-----33336421--343-4677178711103-----677----7500799724100000-33046899998
Q 003593 338 VNALGVYC-----SLLTGQEK--KLV-PFSNHIACTVEMV-----STD----EMYDVAVIDEIQMMSD-ACRGYAWTRAL 399 (808)
Q Consensus 338 l~~~g~~~-----~l~~g~~~--~~~-~~~~~i~~t~e~l-----~~~----~~i~~iVIDEAh~i~d-~~~g~~~~~il 399 (808)
+..++... ....+... ... ....++++|+..+ ... ..++++||||||++.+ .++......++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~ 261 (479)
T 3fmp_B 182 IEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261 (479)
T ss_dssp HHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCCHHHHHHHH
T ss_conf 99997228874599996886402111478998997863899999726996723398999977788844189678999999
Q ss_pred HHCCCCCEECCCCCHHHHHHHHHHHHCCCCCEEEEEEE--------------CCHHHHHHHHHHHHHHHCCCCCEEEEE-
Q ss_conf 30152311124891189999998421299718987110--------------361366489999997503899889994-
Q 003593 400 LGLMADEIHLCGDPSVLDVVRKICSETGDELHEQHYER--------------FKPLVVEAKTLLGDLRNVRSGDCVVAF- 464 (808)
Q Consensus 400 ~~l~~~~~~l~~s~~~~~~i~~l~~~~~~~~~~~~~~r--------------~~~l~~~~~~ll~~l~~~~~g~~II~f- 464 (808)
..++...+.+++++|....+..+............... ..........+...+.....+.++||+
T Consensus 262 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~ 341 (479)
T 3fmp_B 262 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCH 341 (479)
T ss_dssp TTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------
T ss_pred HHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 63885464999948788799999999769986996266456767766999994777889999999985256786699968
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEEECCCCCCCCCC
Q ss_conf 31689999999997249808997399999999999999736999901999778886422468-33899908866789966
Q 003593 465 SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKI 543 (808)
Q Consensus 465 sr~~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GIDip-V~~VI~~d~~K~dg~~~ 543 (808)
++..+..++..|... ++.+..+||++++.+|..+++.|+. |+.+|||||+++++|||+| |++||+++++.....
T Consensus 342 s~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~~--g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~-- 416 (479)
T 3fmp_B 342 TRKTASWLAAELSKE-GHQVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG-- 416 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHC--CCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCC--
T ss_conf 688999999999758-9518996088999999999999976--99959998442116776223998999669998766--
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCH-HHHHHHHC
Q ss_conf 55798689999682488999999549999962999-89999962
Q 003593 544 IPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDL-DYLIECLK 586 (808)
Q Consensus 544 ~P~s~~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d~-~~~~~~l~ 586 (808)
..+..+|+||+|||||.|. .|.|++|+++.. ..+.+.+.
T Consensus 417 -~~s~~~~~Qr~GRagR~g~---~G~~i~~~~~~~~~~~~~~i~ 456 (479)
T 3fmp_B 417 -NPDNETYLHRIGRTGRFGK---RGLAVNMVDSKHSMNILNRIQ 456 (479)
T ss_dssp --------------------------------------------
T ss_pred -CCCHHHHHHHHCCCCCCCC---CCEEEEEECCCCHHHHHHHHH
T ss_conf -7789999987243356999---843999974730599999999
No 9
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=325.11 Aligned_cols=298 Identities=17% Similarity=0.192 Sum_probs=218.1
Q ss_pred HHHHHHHHCCCCCCCCHH--HHHHHHCCCEEEEEECCCCCHHHHHHHHHHHC-------------------------CCE
Q ss_conf 999999979999976221--16877099809999058983779999999825-------------------------928
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFMEA-------------------------KKG 321 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~g~dviv~apTGSGKTl~~L~~L~~~-------------------------~~~ 321 (808)
.+++++...||..|+++| +++.++.|+++++++|||||||++++.+++.. +.+
T Consensus 25 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (417)
T 2i4i_A 25 IIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPIS 104 (417)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCE
T ss_conf 99999997799999889999999872699889990798779899999999999744641000001112334444579648
Q ss_pred EEECCCHHHHHHHHHHHHHCCCC----CCCCCCCCCCC------CCCCCEEEEEEECCC----C----CCCEEEEEECCC
Q ss_conf 99936477899999999871643----43333642134------346771787111036----7----775007997241
Q 003593 322 IYCSPLRLLAMEVFDKVNALGVY----CSLLTGQEKKL------VPFSNHIACTVEMVS----T----DEMYDVAVIDEI 383 (808)
Q Consensus 322 IvisPtR~LA~qi~~~l~~~g~~----~~l~~g~~~~~------~~~~~~i~~t~e~l~----~----~~~i~~iVIDEA 383 (808)
||++|||+|+.|+++.+.+++.. +..+.|+.... ......+++|++.+. . ...++++|+|||
T Consensus 105 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 105 LVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEA 184 (417)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSH
T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECH
T ss_conf 99889299999999999998275880499998899879999986079999998969999999749937635959999783
Q ss_pred HHHHCCCCHHHHHHHHHH--CCC--CCEECCCCCHHHHHHHHHHHHCCCC--------------CEEEEEEECCHHHHHH
Q ss_conf 000003304689999830--152--3111248911899999984212997--------------1898711036136648
Q 003593 384 QMMSDACRGYAWTRALLG--LMA--DEIHLCGDPSVLDVVRKICSETGDE--------------LHEQHYERFKPLVVEA 445 (808)
Q Consensus 384 h~i~d~~~g~~~~~il~~--l~~--~~~~l~~s~~~~~~i~~l~~~~~~~--------------~~~~~~~r~~~l~~~~ 445 (808)
|++.+.+|...+..++.. ++. ..+.++.++|....+..+....... .+.+.+.... .....
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 263 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVE-ESDKR 263 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECC-GGGHH
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEC-CHHHH
T ss_conf 67536586999999997354897677489999985799999999997589789980787777557427899926-07689
Q ss_pred HHHHHHHHHCCCC-CEEEEE-CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 9999997503899-889994-31689999999997249808997399999999999999736999901999778886422
Q 003593 446 KTLLGDLRNVRSG-DCVVAF-SRREIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGL 523 (808)
Q Consensus 446 ~~ll~~l~~~~~g-~~II~f-sr~~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GI 523 (808)
..+...+.....+ .++||+ ++..+..++..|.+. ++.+..+||++++++|..+++.|+. |+.+|||||+++++|+
T Consensus 264 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gi 340 (417)
T 2i4i_A 264 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-GYACTSIHGDRSQRDREEALHQFRS--GKSPILVATAVAARGL 340 (417)
T ss_dssp HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHHHH--TSSCEEEECHHHHTTS
T ss_pred HHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCC
T ss_conf 999999985589971999979889999999999977-9974671089998999999999976--9997999897443478
Q ss_pred CCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHH
Q ss_conf 468-33899908866789966557986899996824889999995499999629998999
Q 003593 524 NLN-IRRVVFYSLSKYNGDKIIPVPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLI 582 (808)
Q Consensus 524 Dip-V~~VI~~d~~K~dg~~~~P~s~~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d~~~~~ 582 (808)
|+| +++||++++ |.+..+|+||+||+||.|. .|.|++|+++++....
T Consensus 341 dip~v~~Vi~~~~---------p~s~~~~~Qr~GR~gR~g~---~g~~~~~~~~~~~~~~ 388 (417)
T 2i4i_A 341 DISNVKHVINFDL---------PSDIEEYVHRIGRTGRVGN---LGLATSFFNERNINIT 388 (417)
T ss_dssp CCCCEEEEEESSC---------CSSHHHHHHHHTTBCC--C---CEEEEEEECGGGGGGH
T ss_pred CCCCCCEEEEECC---------CCCHHHHHHHCCCCCCCCC---CCEEEEEECCCCHHHH
T ss_conf 7346898999769---------9998999986284314899---7259998762438999
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=1.00 E-value=1 Score=323.29 Aligned_cols=300 Identities=16% Similarity=0.184 Sum_probs=228.3
Q ss_pred HHHHHHHHCCCCCCCCHH--HHHHHHCCCEEEEEECCCCCHHHHHHHHHHH-------CCCEEEECCCHHHHHHHHHHHH
Q ss_conf 999999979999976221--1687709980999905898377999999982-------5928999364778999999998
Q 003593 269 RFRAMIESADLTKPHTWF--PFARVMKRKIIYHCGPTNSGKTYNALQRFME-------AKKGIYCSPLRLLAMEVFDKVN 339 (808)
Q Consensus 269 ~i~~~l~~~g~~~pt~~~--~i~~~l~g~dviv~apTGSGKTl~~L~~L~~-------~~~~IvisPtR~LA~qi~~~l~ 339 (808)
.+++++...||..|+++| +++.++.|+++++.+|||||||++++.+++. ++.+||++|+++|+.|+++.+.
T Consensus 47 ~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 126 (410)
T 2j0s_A 47 DLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLL 126 (410)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 99999997699999889999989984799779988899983399999999998625678338997384899999999999
Q ss_pred HCCCCCCC----CCCCCCC-C----C-CCCCEEEEEEECCC----CC----CCEEEEEECCCHHHHCCCCHHHHHHHHHH
Q ss_conf 71643433----3364213-4----3-46771787111036----77----75007997241000003304689999830
Q 003593 340 ALGVYCSL----LTGQEKK-L----V-PFSNHIACTVEMVS----TD----EMYDVAVIDEIQMMSDACRGYAWTRALLG 401 (808)
Q Consensus 340 ~~g~~~~l----~~g~~~~-~----~-~~~~~i~~t~e~l~----~~----~~i~~iVIDEAh~i~d~~~g~~~~~il~~ 401 (808)
+++...++ ..|.... . . .....+++|++.+. .. ..++++|+||||++.+.+|...+..++..
T Consensus 127 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~ 206 (410)
T 2j0s_A 127 ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY 206 (410)
T ss_dssp HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTT
T ss_pred HHHCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 98454773799998997879999985169988985989999999838935756059997568898763459999999984
Q ss_pred CCCCCEECCCCCHHHHHHHHHHHHCCCC--------------CEEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEE-CH
Q ss_conf 1523111248911899999984212997--------------18987110361366489999997503899889994-31
Q 003593 402 LMADEIHLCGDPSVLDVVRKICSETGDE--------------LHEQHYERFKPLVVEAKTLLGDLRNVRSGDCVVAF-SR 466 (808)
Q Consensus 402 l~~~~~~l~~s~~~~~~i~~l~~~~~~~--------------~~~~~~~r~~~l~~~~~~ll~~l~~~~~g~~II~f-sr 466 (808)
++...+.++.++|....+..+....... .+.+.+............+...+.....++++||+ ++
T Consensus 207 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~ 286 (410)
T 2j0s_A 207 LPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 286 (410)
T ss_dssp SCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSH
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 86476699997579999999999875898899956865567885599999382776999999999735778479998578
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-CCEEEEECCCCCCCCCCCC
Q ss_conf 689999999997249808997399999999999999736999901999778886422468-3389990886678996655
Q 003593 467 REIFEVKMAIEKHTNHHCCVIYGALPPETRRQQANLFNDQDNEFDVLVASDAVGMGLNLN-IRRVVFYSLSKYNGDKIIP 545 (808)
Q Consensus 467 ~~~~~l~~~L~~~~g~~v~~lhg~l~~~~R~~~~~~F~~~~g~~~ILVATdv~~~GIDip-V~~VI~~d~~K~dg~~~~P 545 (808)
+.+..++..|... ++.+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||++++ |
T Consensus 287 ~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~---------p 354 (410)
T 2j0s_A 287 RKVDWLTEKMREA-NFTVSSMHGDMPQKERESIMKEFRS--GASRVLISTDVWARGLDVPQVSLIINYDL---------P 354 (410)
T ss_dssp HHHHHHHHHHHHT-TCCCEEECTTSCHHHHHHHHHHHHH--TSSCEEEECGGGSSSCCCTTEEEEEESSC---------C
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHC--CCCCEEEECCHHHCCCCCCCCCEEEEECC---------C
T ss_conf 7899999999867-9946982278998899999999877--99989998976547488445998999799---------9
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 79868999968248899999954999996299989999
Q 003593 546 VPGSQVKQIAGRAGRRGSIYPDGLTTTLNLDDLDYLIE 583 (808)
Q Consensus 546 ~s~~~y~Qr~GRAGR~G~~~~~G~ai~l~~~d~~~~~~ 583 (808)
.+...|+||+||+||.|. .|.|++|+++++....+
T Consensus 355 ~s~~~~~Qr~GR~gR~g~---~g~~~~~~~~~~~~~~~ 389 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGR---KGVAINFVKNDDIRILR 389 (410)
T ss_dssp SSHHHHHHHHTTSSGGGC---CEEEEEEEEGGGHHHHH
T ss_pred CCHHHHHHHCCCCCCCCC---CEEEEEEECHHHHHHHH
T ss_conf 998999986464567999---65999986578999999
Done!