Query 003595
Match_columns 808
No_of_seqs 133 out of 312
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:38:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003595.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1642-1646//hhsearch_pdb/003595hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hhp_A Poly(A) polymerase; tem 1.0 1 1 218.8 29.3 302 81-438 82-401 (530)
2 1q79_A Poly(A) polymerase alph 1.0 1 1 202.5 27.0 335 81-468 95-444 (514)
3 3nyb_A Poly(A) RNA polymerase 1.0 1 1 111.3 21.7 268 12-369 20-299 (323)
4 4e8f_A Poly(A) RNA polymerase 1.0 1 1 100.7 24.5 286 13-388 44-383 (405)
5 4fh3_A Poly(A) RNA polymerase 1.0 1 1 94.7 23.8 276 17-379 20-347 (349)
6 2ikf_A RNA uridylyl transferas 1.0 1 1 89.1 22.2 236 79-366 65-348 (353)
7 3pq1_A Poly(A) RNA polymerase; 1.0 1 1 82.8 26.0 276 10-369 131-438 (464)
8 1px5_A 2'-5'-oligoadenylate sy 1.0 1 1 78.7 21.0 300 16-366 10-330 (349)
9 1r89_A TRNA nucleotidyltransfe 1.0 1 1 73.4 15.2 346 17-498 7-364 (437)
10 3hj4_A Minor editosome-associa 1.0 1 1 72.8 21.1 186 10-279 4-195 (384)
No 1
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=1.00 E-value=1 Score=218.82 Aligned_cols=302 Identities=16% Similarity=0.206 Sum_probs=219.5
Q ss_pred CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEE
Q ss_conf 40267300201223479974348996375545744556651246677599999996416999872787206899750169
Q 003595 81 KTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVL 160 (808)
Q Consensus 81 ~~v~vvGS~~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPiL 160 (808)
..|.++|||++|+. .|+.+||+.+.+|+.+.. +|| +..+++.|++.+.+.++.+. .+++.|||
T Consensus 82 ~~V~~FGSy~lG~~-~p~SDID~~v~~p~~~~~-~df------------f~~l~~~L~~~~~v~~v~~I---~~A~VPII 144 (530)
T 2hhp_A 82 GKIFTYGSYRLGVH-GPGSDIDTLVVVPKHVTR-EDF------------FTVFDSLLRERKELDEIAPV---PDAFVPII 144 (530)
T ss_dssp CEEEEEHHHHHTCC-CTTCCEEEEEEECTTCCH-HHH------------HHHHHHHHHTCTTEEEEEEE---TTSSSCEE
T ss_pred CEEEEECCCCCCCC-CCCCCEEEEEECCCCCCH-HHH------------HHHHHHHHHCCCCCCEEEEE---CCCCCCEE
T ss_conf 35999431035888-999864589943776888-999------------99999998548777269995---58860479
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCH--------HHHHHHHHH
Q ss_conf 998698888999719999724897665433476567865778899998897751133410374--------899999999
Q 003595 161 VVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFL--------EDNAEYVEK 232 (808)
Q Consensus 161 ~l~p~~~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~--------~~~l~~l~~ 232 (808)
.+.+.| ..|.|.++..+ ..+ .|...++ -|.++|.++-. ....+++.+
T Consensus 145 K~~~~g-------i~vDL~f~~~~---~~~-ip~~l~l--------------~~~~~L~~ld~~~~~slng~r~~d~I~~ 199 (530)
T 2hhp_A 145 KIKFSG-------ISIDLICARLD---QPQ-VPLSLTL--------------SDKNLLRNLDEKDLRALNGTRVTDEILE 199 (530)
T ss_dssp EEEETT-------EEEEEEEEECS---SSC-BCTTCCS--------------CCGGGGTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECC-------EEEEEEEECCC---CCC-CCCCCCC--------------CCHHHHHCCCHHHHHCCCHHHHHHHHHH
T ss_conf 999899-------72689983156---556-7733478--------------8535542566555320100789999999
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 821938899999999999984277767-8983279999999999301455878849999999999982388877724415
Q 003595 233 TISRWKELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFP 311 (808)
Q Consensus 233 ~~~~~p~f~dA~~LlKvWl~QRg~~~~-~~gf~gf~~s~ll~~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~ 311 (808)
...+.++|+++++++|.||+|||++.+ .|++||+.|+||+++++| +.+.+|++|+++.++++.+++||. +|+.++
T Consensus 200 ~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQ---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~ 275 (530)
T 2hhp_A 200 LVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQ---LYPNACSAVILNRFFIILSEWNWP-QPVILK 275 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHHCCTT-SCEESS
T ss_pred HCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCCC-CCEEEC
T ss_conf 7567377899999999999975887434367748999999999982---378999899999999998318999-964740
Q ss_pred CCCCCCCC------HHHHHHHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCC
Q ss_conf 89999988------46787665169988848998325224799888999999999999963103--88862012242256
Q 003595 312 PKGQIGVS------KEEKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKID 383 (808)
Q Consensus 312 ~~~~~~~~------~~~~~~f~~~f~vvf~D~sg~~Nl~~~~t~~~~~~L~~eA~~tl~~Ld~~--~~d~F~~lFl~~~~ 383 (808)
...++... ..+..+.+..++| +.+..+..|++++++.++++.|++|.+++.++|++. +.+.|..+|+ +.+
T Consensus 276 ~~~~g~~~~~~w~p~~~~~d~~~~m~I-i~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~~w~~Lf~-~~~ 353 (530)
T 2hhp_A 276 PIEDGPLQVRVWNPKIYAQDRSHRMPV-ITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKKSWANLFE-KND 353 (530)
T ss_dssp CCCCCSSCSCCCCTTTCHHHHTCSSCE-ECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEE-ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC-CCC
T ss_conf 367787565555765577777664358-788997775676489889999999999999999987537998799748-888
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 65667489995138863101124688614689-99999999999642045432899
Q 003595 384 FPAKYDYCVRLNLRGHTEVHALGFCLDDECWR-LYEQKVHSLLNQGLVDRAKSIRV 438 (808)
Q Consensus 384 ~~~~fD~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~lL~raLgdR~~~i~~ 438 (808)
|..+||+++.|..... ....+...|. .++.++..++ ..|.. ...|..
T Consensus 354 ff~~y~~~l~i~~~~~------g~~~~~~~w~G~veSr~r~Lv-~~Le~-~~~i~~ 401 (530)
T 2hhp_A 354 FFFRYKFYLEITAYTR------GSDEQHLKWSGLVESKVRLLV-MKLEV-LAGIKI 401 (530)
T ss_dssp HHHHCSEEEEEEEEEE------SCHHHHHHHHHHHHHHHHHHH-HHHHT-STTEEE
T ss_pred HHHHCCEEEEEEEEEC------CCHHHHHHHCCHHHHHHHHHH-HHHHC-CCCCEE
T ss_conf 6776686999999756------787888564232788999999-98610-567516
No 2
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=1.00 E-value=1 Score=202.46 Aligned_cols=335 Identities=15% Similarity=0.155 Sum_probs=224.3
Q ss_pred CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEE
Q ss_conf 40267300201223479974348996375545744556651246677599999996416999872787206899750169
Q 003595 81 KTFKIGGSYSINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVL 160 (808)
Q Consensus 81 ~~v~vvGS~~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPiL 160 (808)
..|.++|||++|+. .|+-+||+.+.+|.++.. +||++ .++..|++.+.+.++... .+++.|||
T Consensus 95 ~~v~~FGS~~lG~~-~p~SDID~~~v~p~~~~~-~dff~------------~l~~~L~~~~~v~~v~~I---~~A~VPII 157 (514)
T 1q79_A 95 GKIFTFGSYRLGVH-TKGADIDALCVAPRHVDR-SDFFT------------SFYDKLKLQEEVKDLRAV---EEAFVPVI 157 (514)
T ss_dssp CEEEEEHHHHHTCC-CTTCCEEEEEEECTTSCH-HHHTT------------HHHHHHHTCTTEEEEEEE---TTSSSCEE
T ss_pred CEEEEEEEECCCCC-CCCCCEEEEEECCCCCCH-HHHHH------------HHHHHHHCCCCCCEEEEE---CCCCCCEE
T ss_conf 35998402225887-998864489944776788-99999------------999998528667469983---57860579
Q ss_pred EEEECCCCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCH
Q ss_conf 9986988889997199997248-976654334765678657788--9999889775113341037489999999982193
Q 003595 161 VVYPAVKSVEAPGFFVRIIPTA-ASLFNIAKLNLKRNNVRAFNQ--DGIPRATPKYNSSILEDMFLEDNAEYVEKTISRW 237 (808)
Q Consensus 161 ~l~p~~~~~~~~~~~IRi~~~~-~~~F~~~rl~P~rnnvR~~~~--~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~ 237 (808)
.+...| ..|.|.++. ++ ...|..++++...- +-....-+.||..... +++.+...+.
T Consensus 158 K~~~~g-------i~vDL~f~~~~~-----~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~--------d~I~~~vp~~ 217 (514)
T 1q79_A 158 KLCFDG-------IEIDILFARLAL-----QTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVT--------DEILHLVPNI 217 (514)
T ss_dssp EEEETT-------EEEEEEEEECSC-----SSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHH--------HHHHTSSSCH
T ss_pred EEEECC-------EEEEEEEECCCC-----CCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHH--------HHHHHHCCCC
T ss_conf 999898-------517999703776-----56752246775365406666665430007899--------9999975674
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 8899999999999984277767-898327999999999930145587884999999999998238887772441589999
Q 003595 238 KELGEALILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQI 316 (808)
Q Consensus 238 p~f~dA~~LlKvWl~QRg~~~~-~~gf~gf~~s~ll~~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~ 316 (808)
++|+.+++++|.||+|||++.. .||+||+.|+||++++|| +.+.++..|++..++++.+++||. +|+.++...++
T Consensus 218 ~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Q---l~P~~s~~~LL~~FF~~y~~~dw~-~pV~l~~~~~~ 293 (514)
T 1q79_A 218 DNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQ---LYPNAIASTLVHKFFLVFSKWEWP-NPVLLKQPEEC 293 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHH---HSTTCCHHHHHHHHHHHHHSCCTT-SCBCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHCCCCC-CCEEECCCCCC
T ss_conf 77899999999999975887434577638999999999997---078998899999999998438999-97573146778
Q ss_pred CCCH----H--HHHHHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 9884----6--787665169988848998325224799888999999999999963103--8886201224225665667
Q 003595 317 GVSK----E--EKLQYKEAFPVVICDPSAQVNLAFRMTSVGFCELQDEAASTLQCMDKC--GDGGFEETFLTKIDFPAKY 388 (808)
Q Consensus 317 ~~~~----~--~~~~f~~~f~vvf~D~sg~~Nl~~~~t~~~~~~L~~eA~~tl~~Ld~~--~~d~F~~lFl~~~~~~~~f 388 (808)
.... + ...+-....+| +-+.....|++++++.++++.|+.|.+++.++|++. +...|+.+|. +.+|..+|
T Consensus 294 ~l~~~~w~p~~~~~dr~~~m~I-idP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~~w~~Lf~-~~~ff~~y 371 (514)
T 1q79_A 294 NLNLPVWDPRVNPSDRYHLMPI-ITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFE-APNFFQKY 371 (514)
T ss_dssp SSCCCCCCTTTCGGGGGCSSCB-BCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHTC-CCCHHHHC
T ss_pred CCCCCCCCCCCCCCCCCCCEEE-ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-CCCHHHHC
T ss_conf 8777655776687676662238-688987776666579889999999999999999987528998899827-76666652
Q ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCEEEEE
Q ss_conf 4899951388631011246886146899-999999999964204543289970599986434578--7768997459999
Q 003595 389 DYCVRLNLRGHTEVHALGFCLDDECWRL-YEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENG--LAVLDREPLLVGI 465 (808)
Q Consensus 389 D~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~lL~raLgdR~~~i~~~~~~~~~~w~i~~~--~~~~~~~~i~iGl 465 (808)
++++.|.+.+... .+...|.. ++.++. .|...|. |...|.+.++-+ ....-.+. ..........|||
T Consensus 372 ~~yl~v~~~a~~~-------~~~~~w~G~veSr~r-~Lv~~le-~~~~i~~a~~~P-~~f~~~~~~~~~~~~~~~~~iGL 441 (514)
T 1q79_A 372 KHYIVLLASAPTE-------KQRLEWVGLVESKIR-ILVGSLE-KNEFITLAHVNP-QSFPAPKENPDKEEFRTMWVIGL 441 (514)
T ss_dssp SEEEEEEEEESSH-------HHHHHHHHHHHTTHH-HHHHHHH-TSTTEEEEEECS-CCEECCCSCTTSCCEEEEEEEEE
T ss_pred CEEEEEEEEECCH-------HHHHHHEEHHHHHHH-HHHHHHC-CCCCCEEEECCC-CCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 2089999987997-------885131020455289-9987750-488740530476-66577433466772358999977
Q ss_pred EEC
Q ss_conf 947
Q 003595 466 SVS 468 (808)
Q Consensus 466 ~l~ 468 (808)
.++
T Consensus 442 ~~~ 444 (514)
T 1q79_A 442 VFK 444 (514)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 655
No 3
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=111.28 Aligned_cols=268 Identities=16% Similarity=0.217 Sum_probs=182.4
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECC
Q ss_conf 50200898750046898701015799999999997703999888895446732122598404899718840267300201
Q 003595 12 PMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSI 91 (808)
Q Consensus 12 ~f~LQidELL~ev~~~~~~~~~~~~~~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l 91 (808)
.+--+|.++.+.++|.... ...-+.++.++++.+.++- +-..|.+.||++.
T Consensus 20 ~L~~Ei~~f~~~i~Pt~eE--~~~R~~~~~~l~~~~~~~~---------------------------p~~~v~~fGS~~~ 70 (323)
T 3nyb_A 20 WLTFEIKDFVAYISPSREE--IEIRNQTISTIREAVKQLW---------------------------PDADLHVFGSYST 70 (323)
T ss_dssp HHHHHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHTTC---------------------------TTCCEEEESTTTT
T ss_pred HHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEECCCCC
T ss_conf 9999999999986969999--9999999999999999988---------------------------9987999576355
Q ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCC
Q ss_conf 22347997434899637554574455665124667759999999641699987278720689975016999869888899
Q 003595 92 NCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEA 171 (808)
Q Consensus 92 ~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPiL~l~p~~~~~~~ 171 (808)
|+.. ++-+||+.|..|...... | -.|..++..|++.+.+.++... .+++.||+.+.-..
T Consensus 71 g~~~-~~SDiDl~v~~~~~~~~~-----------~-~~l~~l~~~L~~~~~~~~v~~I---~~ArVPIIk~~~~~----- 129 (323)
T 3nyb_A 71 DLYL-PGSDIDCVVTSELGGKES-----------R-NNLYSLASHLKKKNLATEVEVV---AKARVPIIKFVEPH----- 129 (323)
T ss_dssp TCCC-TTSCEEEEECSSCCGGGH-----------H-HHHHHHHHHHHHTTSCSSCEEE---ESSSCEEEEEEETT-----
T ss_pred CCCC-CCCCCEEEEECCCCCHHH-----------H-HHHHHHHHHHHHCCCCEEEEEE---ECCCCCEEEEEECC-----
T ss_conf 9989-999814999548887167-----------8-9999999998557984279997---51578779999757-----
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 97199997248976654334765678657788999988977511334103748999999998219388999999999999
Q 003595 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWA 251 (808)
Q Consensus 172 ~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~p~f~dA~~LlKvWl 251 (808)
+++.+.|-.... ....| ..++.......|.|+..++++|.||
T Consensus 130 ~gi~vDIs~~~~--------------------------~g~~~------------t~li~~~~~~~~~~r~lv~~iK~wa 171 (323)
T 3nyb_A 130 SGIHIAVSFERT--------------------------NGIEA------------AKLIREWLDDTPGLRELVLIVKQFL 171 (323)
T ss_dssp TTEEEEEESSCS--------------------------STTHH------------HHHHHHHHHSCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECCC--------------------------HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 780688884373--------------------------89999------------9999999775252889999999999
Q ss_pred HHCCCCCC-CCCCHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCCCCHHHH
Q ss_conf 84277767-89832799999999993014------55878849999999999982-388877724415899999884678
Q 003595 252 RQRSSIYV-HDCLNGYLISILLSYLVSLD------KINNSMKALQILRVVLDFIA-TSKLWNRGLYFPPKGQIGVSKEEK 323 (808)
Q Consensus 252 ~QRg~~~~-~~gf~gf~~s~ll~~Ll~~~------~l~~~~SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~~~~~~ 323 (808)
++||++.. .||+++|.|.+++++.+|.. .+.+..+.-+++..++.|.+ ..||.+.+|.+...+....+...-
T Consensus 172 k~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~~~~~~k~~~ 251 (323)
T 3nyb_A 172 HARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVYFPKSTW 251 (323)
T ss_dssp HHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSCEEEEEGGGC
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEHHHC
T ss_conf 97499976579847799999999999748866766678624599999999999636068997179984498604467760
Q ss_pred HHH---HHCCCEEEECCCCC-EEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 766---51699888489983-25224799888999999999999963103
Q 003595 324 LQY---KEAFPVVICDPSAQ-VNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (808)
Q Consensus 324 ~~f---~~~f~vvf~D~sg~-~Nl~~~~t~~~~~~L~~eA~~tl~~Ld~~ 369 (808)
..+ +..++..+.||... .|+.... ..+..++.|.+.+.++|.+.
T Consensus 252 ~~~~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A~~~L~~~ 299 (323)
T 3nyb_A 252 SAIQPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGAFDLLTNR 299 (323)
T ss_dssp GGGCSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 1002467775379868998776456464--87999999999999999986
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=1.00 E-value=1 Score=100.73 Aligned_cols=286 Identities=16% Similarity=0.179 Sum_probs=184.6
Q ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCC
Q ss_conf 02008987500468987010157999999999977039998888954467321225984048997188402673002012
Q 003595 13 MDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSIN 92 (808)
Q Consensus 13 f~LQidELL~ev~~~~~~~~~~~~~~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~ 92 (808)
+--+|.++++.++|.... ...-+.++..|++++..+- +-..|.++||++.|
T Consensus 44 L~~~i~~~~~~i~Pt~eE--~~~R~~v~~~l~~~i~~~~---------------------------p~~~v~~fGS~~~G 94 (405)
T 4e8f_A 44 FTKFCYEVYNEIKISDKE--FKEKRAALDTLRLCLKRIS---------------------------PDAELVAFGSLESG 94 (405)
T ss_dssp HHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------TTCEEEEESHHHHT
T ss_pred HHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHC---------------------------CCCEEEEEEECCCC
T ss_conf 999999999980979999--9999999999999999878---------------------------99779998555479
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEE-ECCCCCCC
Q ss_conf 23479974348996375545744556651246677599999996416999872787206899750169998-69888899
Q 003595 93 CVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVY-PAVKSVEA 171 (808)
Q Consensus 93 t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPiL~l~-p~~~~~~~ 171 (808)
+... +-.||+.|..|... +.. -++..++..|++. ..++.. -..++.||+.+. -...+ ..
T Consensus 95 ~~~~-~SDiDl~v~~~~~~-~~~------------~~l~~l~~~L~~~--~~~v~~---i~~ArVPIIK~~~d~~~g-~~ 154 (405)
T 4e8f_A 95 LALK-NSDMDLCVLMDSRV-QSD------------TIALQFYEELIAE--GFEGKF---LQRARIPIIKLTSDTKNG-FG 154 (405)
T ss_dssp CCBS-SCCEEEEEECCC----CT------------THHHHHHHHHHHT--TEEEEE---EEETTEEEEEEEEESSSS-CC
T ss_pred CCCC-CCCEEEEEEECCCC-CHH------------HHHHHHHHHHHHC--CCEEEE---ECCCCCCEEEEEECCCCC-CC
T ss_conf 9899-99978999726899-999------------9999999999860--774488---625778679999614777-66
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 97199997248976654334765678657788999988977511334103748999999998219388999999999999
Q 003595 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWA 251 (808)
Q Consensus 172 ~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~p~f~dA~~LlKvWl 251 (808)
.++.+.|-.. |. ...+|+ .++....+..|.|+..++++|.||
T Consensus 155 ~gi~~DIs~~---------------n~-----------~g~~~t------------~ll~~y~~~~p~~r~Lv~~lK~wa 196 (405)
T 4e8f_A 155 ASFQCDIGFN---------------NR-----------LAIHNT------------LLLSSYTKLDARLKPMVLLVKHWA 196 (405)
T ss_dssp TTCCEEEEES---------------CH-----------HHHHHH------------HHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred CCEEEEEEEC---------------CC-----------CHHHHH------------HHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 8648987624---------------54-----------157779------------999999861878899999999999
Q ss_pred HHCCCCCC-CCCCHHHHHHHHHHHHH-HCCC--C--------------------------------CCCCCHHHHHHHHH
Q ss_conf 84277767-89832799999999993-0145--5--------------------------------87884999999999
Q 003595 252 RQRSSIYV-HDCLNGYLISILLSYLV-SLDK--I--------------------------------NNSMKALQILRVVL 295 (808)
Q Consensus 252 ~QRg~~~~-~~gf~gf~~s~ll~~Ll-~~~~--l--------------------------------~~~~SsyQifr~~l 295 (808)
++||++.. .||+++|.|.+|+++.+ |... + ....|--+++..++
T Consensus 197 k~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~~~~n~~slg~LL~~FF 276 (405)
T 4e8f_A 197 KRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFF 276 (405)
T ss_dssp HHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 97489867579857699999999999723588757704323666665517754010104243226666356999999999
Q ss_pred HHHH-CCCCCCCCEEECCCCCCCCCHHHHHH--------------HHHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHH
Q ss_conf 9982-38887772441589999988467876--------------65169988848998-32522479988899999999
Q 003595 296 DFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQ--------------YKEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEA 359 (808)
Q Consensus 296 ~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~--------------f~~~f~vvf~D~sg-~~Nl~~~~t~~~~~~L~~eA 359 (808)
.|-+ ..||.+.+|.+...+ ..++.+. .. ....++...-||-- ..|+...++...+..++.|-
T Consensus 277 ~yY~~~Fd~~~~vIsir~~g-~~~~K~~-k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv~r~vs~~~~~~I~~eF 354 (405)
T 4e8f_A 277 RFYAYKFEPREKVVTFRRPD-GYLTKQE-KGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEF 354 (405)
T ss_dssp HHHHHTCCTTTBEECSSSTT-CCCBHHH-HTCCC-------------CCCSSEEBCSSSTTCBTTTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCEEEEECCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99720268998479981688-6333200-155653344554222356776279978887565555677889999999999
Q ss_pred HHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 9999963103-8886201224225665667
Q 003595 360 ASTLQCMDKC-GDGGFEETFLTKIDFPAKY 388 (808)
Q Consensus 360 ~~tl~~Ld~~-~~d~F~~lFl~~~~~~~~f 388 (808)
+.+..+|.+. ..+.|+.+| .+.+++.++
T Consensus 355 ~rA~~iL~~~~~~~~w~~Lf-~~~~~~~~~ 383 (405)
T 4e8f_A 355 MAASRLLNSRSYPIPYDSLF-EEAPIPPRR 383 (405)
T ss_dssp HHHHHHHTCSSSSCCGGGGG-SCCCCC---
T ss_pred HHHHHHHHHHCCCCCHHHHH-CCCCCCCCC
T ss_conf 99999985203589899982-867776212
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=1.00 E-value=1 Score=94.72 Aligned_cols=276 Identities=16% Similarity=0.156 Sum_probs=165.6
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 89875004689870101579999999999770399988889544673212259840489971884026730020122347
Q 003595 17 VEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVK 96 (808)
Q Consensus 17 idELL~ev~~~~~~~~~~~~~~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k 96 (808)
+.|+.++++|.... .+.-+.++.+|+.+|.++ + |-..|.+.||++.|+..+
T Consensus 20 ~~~l~~~~~pt~~e--~~~R~~~~~~l~~~i~~~-------------~--------------p~~~v~~fGS~~~g~~~~ 70 (349)
T 4fh3_A 20 CYEVYNEIKISDKE--FKEKRAALDTLRLCLKRI-------------S--------------PDAELVAFGSLESGLALK 70 (349)
T ss_dssp HHHHHHHHBCCHHH--HHHHHHHHHHHHHHHHTT-------------C--------------TTCEEEEESHHHHTCCBS
T ss_pred HHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHH-------------C--------------CCCEEEEEEECCCCCCCC
T ss_conf 99999970989999--999999999999999998-------------8--------------998999971144789997
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCEEE
Q ss_conf 99743489963755457445566512466775999999964169998727872068997501699986988889997199
Q 003595 97 PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFV 176 (808)
Q Consensus 97 ~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPiL~l~p~~~~~~~~~~~I 176 (808)
+-+||+.|..|...-. .. +...+...+.+.. .++... ..++.||+...-........+..+
T Consensus 71 -~SDiDl~v~~~~~~~~------------~~-~~~~~~~~~~~~~--~~~~~i---~~ArVPiik~~~~~~~~~~~~~~~ 131 (349)
T 4fh3_A 71 -NSDMDLCVLMDSRVQS------------DT-IALQFYEELIAEG--FEGKFL---QRARIPIIKLTSDTKNGFGASFQC 131 (349)
T ss_dssp -SCCEEEEEECCTTSCH------------HH-HHHHHHHHHHHTT--EEEEEE---EETTEEEEEEEEESSSSSCTTCCE
T ss_pred -CCCEEEEEECCCCCCH------------HH-HHHHHHHHHHHHC--CCCEEE---EEEEEEEEEEEECCCCCCCCCCEE
T ss_conf -9897799965888785------------89-9999999987501--465575---540433599984145664356245
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99724897665433476567865778899998897751133410374899999999821938899999999999984277
Q 003595 177 RIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRSS 256 (808)
Q Consensus 177 Ri~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~p~f~dA~~LlKvWl~QRg~ 256 (808)
.|-. ||. ...+ ...++.......|.|+..++++|.||++||+
T Consensus 132 Dis~---------------~~~-----------~g~~------------~t~ll~~~~~~~~~~r~l~~~iK~wak~~~l 173 (349)
T 4fh3_A 132 DIGF---------------NNR-----------LAIH------------NTLLLSSYTKLDARLKPMVLLVKHWAKRKQI 173 (349)
T ss_dssp EEEE---------------SCH-----------HHHH------------HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTC
T ss_pred ECCC---------------CCC-----------HHHH------------HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 4676---------------762-----------6888------------9999999862087788999999999998499
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHCCCCC-----------------------------------CCCCHHHHHHHHHHHHH-
Q ss_conf 767-89832799999999993014558-----------------------------------78849999999999982-
Q 003595 257 IYV-HDCLNGYLISILLSYLVSLDKIN-----------------------------------NSMKALQILRVVLDFIA- 299 (808)
Q Consensus 257 ~~~-~~gf~gf~~s~ll~~Ll~~~~l~-----------------------------------~~~SsyQifr~~l~fLa- 299 (808)
+.. .||+++|.|++|+++-+|..... ...|.-+++..++.|-+
T Consensus 174 ~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~n~~slg~LL~~FF~~Y~~ 253 (349)
T 4fh3_A 174 NSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYAY 253 (349)
T ss_dssp CCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSCCCSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98678987729999999999973467876806664454566313576355442033325544754389999999998642
Q ss_pred CCCCCCCCEEECCCCCCCCCHH-------------HHHHHHHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3888777244158999998846-------------787665169988848998-32522479988899999999999996
Q 003595 300 TSKLWNRGLYFPPKGQIGVSKE-------------EKLQYKEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQC 365 (808)
Q Consensus 300 ~~d~~~~~i~~~~~~~~~~~~~-------------~~~~f~~~f~vvf~D~sg-~~Nl~~~~t~~~~~~L~~eA~~tl~~ 365 (808)
..||.+.++.+...+ .-.+.. ........++....||-- ..|+...++..++..++.|-+.+.++
T Consensus 254 ~Fd~~~~vIsi~~~~-~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nvar~Vs~~~~~~I~~eF~~A~~~ 332 (349)
T 4fh3_A 254 KFEPREKVVTFRRPD-GYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRL 332 (349)
T ss_dssp TCCTTTBCBCSSSTT-CCCBHHHHTCC---------------CCSSCBBCSSSTTCBGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCC-CCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 058778469843898-8655677434444445675334577883599989998987379998989999999999999999
Q ss_pred HHHCC-CCCCCCCCC
Q ss_conf 31038-886201224
Q 003595 366 MDKCG-DGGFEETFL 379 (808)
Q Consensus 366 Ld~~~-~d~F~~lFl 379 (808)
|.+.. ...|+.+|-
T Consensus 333 L~~~~~~~~~~~lfe 347 (349)
T 4fh3_A 333 LNSRSYPIPYDSLFE 347 (349)
T ss_dssp HHCCSSSCCGGGGGS
T ss_pred HHCCCCCCCHHHHHH
T ss_conf 727456988788702
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=1.00 E-value=1 Score=89.09 Aligned_cols=236 Identities=15% Similarity=0.089 Sum_probs=156.2
Q ss_pred CCCEEEEEEEEC-CCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-HH--HHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 884026730020-1223479974348996375545744556651-24--6677599999996416999872787206899
Q 003595 79 KPKTFKIGGSYS-INCVVKPAVNVDLFVGLPKECFHEKDYLNHR-YH--AKRCLYLCVIKKHLKSSPSFDKVEWSAMQNE 154 (808)
Q Consensus 79 ~P~~v~vvGS~~-l~t~~k~~~~VDl~V~mP~~~fq~KDylN~R-Y~--~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd 154 (808)
+-..|.+.||++ .|... ++-+||+.|..|...-..| ..+.+ .. ..+.-.|..++..|++.+...++... .+
T Consensus 65 p~~~v~~FGS~~vtGl~l-p~SDIDl~v~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i---~~ 139 (353)
T 2ikf_A 65 PLMRLYTFGSTVVYGVHE-KGSDVDFVVLNKTDVEDGK-GGDAATQVAKGLQADILAKLARVIRQKHLSWNVEEV---RR 139 (353)
T ss_dssp TTCEEEEESHHHHHSSCC-TTCCEEEEEECHHHHHSTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEE---CS
T ss_pred CCCEEEEECCCCCCCCCC-CCCCEEEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE---CC
T ss_conf 990899823764168899-8766238986255556664-433024455566999999999999836888746994---24
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 75016999869888899971999972489766543347656786577889999889775113341037489999999982
Q 003595 155 ARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTI 234 (808)
Q Consensus 155 ~~kPiL~l~p~~~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~ 234 (808)
++.||+.+... .+..+.|-.. |. ...+|+ .++....
T Consensus 140 ArVPIiK~~~~------~~i~~Dis~~---------------n~-----------~g~~~t------------~ll~~~~ 175 (353)
T 2ikf_A 140 TRVPVVRVKGG------GAVDFDITAY---------------RR-----------NGVRNS------------ALLRAYF 175 (353)
T ss_dssp SSSCEEEEECS------SSCEEEEEES---------------CC-----------HHHHHH------------HHHHHHH
T ss_pred CCEEEEEEECC------CCCEEEEEEC---------------CC-----------CHHHHH------------HHHHHHH
T ss_conf 66369999858------9717998825---------------85-----------389999------------9999999
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCC-C-CCCHHHHHHHHHHHHHHCCC----CC-----------------------CCC
Q ss_conf 1938899999999999984277767-8-98327999999999930145----58-----------------------788
Q 003595 235 SRWKELGEALILLKVWARQRSSIYV-H-DCLNGYLISILLSYLVSLDK----IN-----------------------NSM 285 (808)
Q Consensus 235 ~~~p~f~dA~~LlKvWl~QRg~~~~-~-~gf~gf~~s~ll~~Ll~~~~----l~-----------------------~~~ 285 (808)
...|.|+..++++|.|+++||++.. . ||+++|.|++|+++.+|+.+ +. ...
T Consensus 176 ~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2ikf_A 176 EQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGL 255 (353)
T ss_dssp HHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf 86922999999999999986999877799834999999999999726889976811167655157776776566777845
Q ss_pred CHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCCCCHHHHHHH-------------HHCCCEEEECCCC-CEEECCCCCHH
Q ss_conf 49999999999982-388877724415899999884678766-------------5169988848998-32522479988
Q 003595 286 KALQILRVVLDFIA-TSKLWNRGLYFPPKGQIGVSKEEKLQY-------------KEAFPVVICDPSA-QVNLAFRMTSV 350 (808)
Q Consensus 286 SsyQifr~~l~fLa-~~d~~~~~i~~~~~~~~~~~~~~~~~f-------------~~~f~vvf~D~sg-~~Nl~~~~t~~ 350 (808)
+--+++..++.|-+ ..||.+.+|.+...+ ..+... ..+ ...+.....||-- ..|+...++..
T Consensus 256 slg~LL~~Ff~~Y~~~fd~~~~vIsi~~~~--~~~k~~-~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~ 332 (353)
T 2ikf_A 256 ELGTQVLDFLHFFLHEFDSDKQVISLNRPG--ITTKEE-LDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPL 332 (353)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTEEECSSSSS--CEEHHH-HTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCEEEECCCCC--CEECHH-HCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 599999999999632057674289767996--024043-04453323111135777766389989999998656798989
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8999999999999963
Q 003595 351 GFCELQDEAASTLQCM 366 (808)
Q Consensus 351 ~~~~L~~eA~~tl~~L 366 (808)
.++.++.|-+.+.+.+
T Consensus 333 ~~~~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 333 KRDFLRRHLEKARDTA 348 (353)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 7
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=82.77 Aligned_cols=276 Identities=16% Similarity=0.181 Sum_probs=156.6
Q ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 68502008987500468987010157999999999977039998888954467321225984048997188402673002
Q 003595 10 TDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSY 89 (808)
Q Consensus 10 ~~~f~LQidELL~ev~~~~~~~~~~~~~~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~ 89 (808)
...+.-||.++.+.++|.... ...=..++.++++++..+ | |-..|.+.||+
T Consensus 131 a~sl~~EI~~f~~~i~PT~eE--~~~R~~vv~~le~ii~~~--------------------------f-P~a~V~~FGS~ 181 (464)
T 3pq1_A 131 AESIDDQLNTLLKEFQLTEEN--TKLRYLTCSLIEDMAAAY--------------------------F-PDCIVRPFGSS 181 (464)
T ss_dssp SSSHHHHHHHHHHHHBCCHHH--HHHHHHHHHHHHHHHTTT--------------------------S-TTCEEEEEGGG
T ss_pred CCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHH--------------------------C-CCCEEEEECCC
T ss_conf 421789999999986999999--999999999999999987--------------------------8-99879996877
Q ss_pred CCCCCCCCCCCEEEEEECCCCC--------------CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCEEEECCCCC
Q ss_conf 0122347997434899637554--------------57445566512466775999999964169-99872787206899
Q 003595 90 SINCVVKPAVNVDLFVGLPKEC--------------FHEKDYLNHRYHAKRCLYLCVIKKHLKSS-PSFDKVEWSAMQNE 154 (808)
Q Consensus 90 ~l~t~~k~~~~VDl~V~mP~~~--------------fq~KDylN~RY~~KRA~YLa~iA~~L~~~-~~~~~v~~~~~~gd 154 (808)
+.|.. .++-++||.|..|..- +|-|.--+.|+-..+ .|..++..|+.. +.+.++.. -..
T Consensus 182 ~tGL~-lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~l~seR~~~~~--iL~~la~~L~~~~~~~~~v~~---I~~ 255 (464)
T 3pq1_A 182 VNTFG-KLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQK--ILSVLGECLDHFGPGCVGVQK---ILN 255 (464)
T ss_dssp TSSCC-BTTCCEEEEEECC-----CCSCEECC---EECCCCCSCHHHHHHH--HHHHHHHHHHHSSTTEEEEEE---ECS
T ss_pred CCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHCCCCCCEEEE---ECC
T ss_conf 24888-999995799964775555432356631345541244356778999--999999999843899732688---537
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 75016999869888899971999972489766543347656786577889999889775113341037489999999982
Q 003595 155 ARKPVLVVYPAVKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTI 234 (808)
Q Consensus 155 ~~kPiL~l~p~~~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~ 234 (808)
++.||+...-.. ++..+.|-.. | ....+|+. ++....
T Consensus 256 ARVPIIKf~~~~-----tgi~~DIS~n---------------n-----------~~gi~ns~------------ll~~y~ 292 (464)
T 3pq1_A 256 ARCPLVRFSHQA-----SGFQCALTTN---------------N-----------RIALTSSE------------LLYIYG 292 (464)
T ss_dssp SSSCEEEEEETT-----TCCEEEEECS---------------C-----------TTHHHHHH------------HHHHHH
T ss_pred CCCCEEEEEECC-----CCEEEEEECC---------------C-----------CCHHHHHH------------HHHHHH
T ss_conf 898779999857-----8838998468---------------8-----------72899999------------999998
Q ss_pred HCHHHHHHHHHHHHHHHHHCCCCCC-CCC-CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-----HHHHCCC--CCC
Q ss_conf 1938899999999999984277767-898-327999999999930145587884999999999-----9982388--877
Q 003595 235 SRWKELGEALILLKVWARQRSSIYV-HDC-LNGYLISILLSYLVSLDKINNSMKALQILRVVL-----DFIATSK--LWN 305 (808)
Q Consensus 235 ~~~p~f~dA~~LlKvWl~QRg~~~~-~~g-f~gf~~s~ll~~Ll~~~~l~~~~SsyQifr~~l-----~fLa~~d--~~~ 305 (808)
+..|.++.-++++|.|+++||++.. .|| +++|-|.+++++-+|... .+-+.+.|-....- ..+..+| +..
T Consensus 293 ~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~-ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~ 371 (464)
T 3pq1_A 293 ALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRS-PPILPTLDSLKTLADAEDKCVIEGNNCTFVR 371 (464)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC--------CCSHHHHTTC--------------
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCHHHHCCCCCCCCCEEECCCCCCCCC
T ss_conf 748218899999999999809986566997673999999999997159-9848976782321375544122464566434
Q ss_pred C--CEEECCCCCCCCCH-HHHHHHHHCCCEEEECC-----CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7--24415899999884-67876651699888489-----98325224799888999999999999963103
Q 003595 306 R--GLYFPPKGQIGVSK-EEKLQYKEAFPVVICDP-----SAQVNLAFRMTSVGFCELQDEAASTLQCMDKC 369 (808)
Q Consensus 306 ~--~i~~~~~~~~~~~~-~~~~~f~~~f~vvf~D~-----sg~~Nl~~~~t~~~~~~L~~eA~~tl~~Ld~~ 369 (808)
. .+....+ ..+. +.+..|-+.|-. +|- +-.+|+..+++....+.++.+++.+.-+|...
T Consensus 372 dl~~l~~~~N---~~slgeLL~gFF~yYa~--FDf~~~vIsI~~Nvs~nV~~~~~~r~~~~~r~a~~il~~~ 438 (464)
T 3pq1_A 372 DLSRIKPSQN---TETLELLLKEFFEYFGN--FAXXXXXXXXXXXXXXXVSQSQLQKFVDLARESAWILQQE 438 (464)
T ss_dssp -------CCC---CCCHHHHHHHHHHHGGG--CCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHCCCCCC---CCCHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1766378888---57799999999999984--8874333211211124448999999999999999997401
No 8
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=1.00 E-value=1 Score=78.67 Aligned_cols=300 Identities=17% Similarity=0.201 Sum_probs=174.5
Q ss_pred HHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCC
Q ss_conf 089875-0046898701015799999999997703999888895446732122598404899718840267300201223
Q 003595 16 KVEELL-KEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCV 94 (808)
Q Consensus 16 QidELL-~ev~~~~~~~~~~~~~~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~ 94 (808)
|+++.+ ..++|+... ...+......+.+.|++.--.+. .... +-.++-.+|||+-||+
T Consensus 10 ~l~~fi~~~l~p~~~~--~~~i~~~~~~I~~~L~~~~~~~~--------------~~~~-----~v~~v~~~GSyargT~ 68 (349)
T 1px5_A 10 DLDKFIEDHLLPNTXF--RTQVKEAIDIVXRFLKERCFQGT--------------ADPV-----RVSKVVKGGSSGKGTT 68 (349)
T ss_dssp GHHHHHHHHTSCCHHH--HHHHHHHHHHHHHHHHHHTTCC-----------------CC-----EEEEEEEEEEC-----
T ss_pred HHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHHHHCCCC--------------CCCC-----CEEEEEEECCCCCCCC
T ss_conf 9999999546998788--99999999999999976302455--------------6775-----2478997167378843
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCEEEECCCCCCCEE-EEEEEECCCCCCC
Q ss_conf 4799743489963755457445566512466775999999964169--998727872068997501-6999869888899
Q 003595 95 VKPAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSS--PSFDKVEWSAMQNEARKP-VLVVYPAVKSVEA 171 (808)
Q Consensus 95 ~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~--~~~~~v~~~~~~gd~~kP-iL~l~p~~~~~~~ 171 (808)
+++.-.|||+|.+|.. -...|.+ ..+.-++..|-+.|.+. ....++.++........| .+.+.-.... ..
T Consensus 69 lrg~sDiDlvV~l~~~-~~~~~~~-----~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~-~~ 141 (349)
T 1px5_A 69 LRGRSDADLVVFLTKL-TSFEDQL-----RRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQ-LQ 141 (349)
T ss_dssp ---CEEEEEEEEEESC-SCTTHHH-----HTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETT-TT
T ss_pred CCCCCCEEEEEEECCC-CCHHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCC-CC
T ss_conf 6898744599997898-7666677-----569999999999999864310226641572034567854899997367-67
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-----------CCCHHHHHHHHHHHHHCHHHH
Q ss_conf 971999972489766543347656786577889999889775113341-----------037489999999982193889
Q 003595 172 PGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILE-----------DMFLEDNAEYVEKTISRWKEL 240 (808)
Q Consensus 172 ~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~-----------D~~~~~~l~~l~~~~~~~p~f 240 (808)
.++.|.|.||.... ..+.+ +..+....|...|-. ......|.+++.+ ....+
T Consensus 142 ~~~~vDVvPa~~~l---~~~~~-----------~~~~~~~~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~---~~~~~ 204 (349)
T 1px5_A 142 QEVEFDVLPAFDAL---GQWTP-----------GYKPNPEIYVQLIKECKSRGKEGEFSTCFTELQRDFLRN---RPTKL 204 (349)
T ss_dssp EEEEEEEEEEECSS---CSCCT-----------TSCCCHHHHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHS---SCHHH
T ss_pred CCEEEEEEEEHHHH---CCCCC-----------CCCCCHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHH---CCHHH
T ss_conf 74699999713431---30014-----------668983778988760466566761202077999999985---84988
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCH
Q ss_conf 99999999999842777678983279999999999301455878849999999999982388877724415899999884
Q 003595 241 GEALILLKVWARQRSSIYVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSK 320 (808)
Q Consensus 241 ~dA~~LlKvWl~QRg~~~~~~gf~gf~~s~ll~~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~~ 320 (808)
++-|+|+|-|.++-+...+..++.+|.+-+|++|....+.-...++-+|-||.+|+.|++.. ...++....- +...
T Consensus 205 k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~--~~~i~w~~~y--~~~~ 280 (349)
T 1px5_A 205 KSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ--KLCIFWEAYY--DFTN 280 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG--GCEECCCSSC--CSSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEECCC--CCCC
T ss_conf 89999999999984330368989818999999999871798557878999999999997277--3540654344--6652
Q ss_pred HHHHHH-----HHCCCEEEECCCC-CEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 678766-----5169988848998-325224799888999999999999963
Q 003595 321 EEKLQY-----KEAFPVVICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCM 366 (808)
Q Consensus 321 ~~~~~f-----~~~f~vvf~D~sg-~~Nl~~~~t~~~~~~L~~eA~~tl~~L 366 (808)
+....| ...-|++ +||.- +-|+.+. +...++++.++|+..|+..
T Consensus 281 ~~~~~fl~~~l~~~~p~I-~DP~dp~~NVa~~-~~~~~~~~~~~A~~~l~~~ 330 (349)
T 1px5_A 281 PVVGRCMLQQLKKPRPVI-LDPADPTGNVGGG-DTHSWQRLAQEARVWLGYP 330 (349)
T ss_dssp HHHHHHHHHHHTSSSCEE-BCTTCTTCBTTCS-CHHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHCCCCCEE-ECCCCCCCCCCCC-CHHHHHHHHHHHHHHHHCH
T ss_conf 667765355415799746-6999987762678-5652999999999999565
No 9
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=1.00 E-value=1 Score=73.39 Aligned_cols=346 Identities=16% Similarity=0.167 Sum_probs=197.6
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCC
Q ss_conf 89875004689870101579999999999770399988889544673212259840489971884026730020122347
Q 003595 17 VEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSYSINCVVK 96 (808)
Q Consensus 17 idELL~ev~~~~~~~~~~~~~~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~~l~t~~k 96 (808)
.+|.++.++|+... ...+......+++.|++ -+.++-.+|||+-+|.++
T Consensus 7 ~~~~l~~i~P~~~E--~~~~~~~~~~I~~~L~~-----------------------------~~~~v~~~GS~AkgT~Lr 55 (437)
T 1r89_A 7 LEKALELVIPDEEE--VRKGREAEEELRRRLDE-----------------------------LGVEYVFVGSYARNTWLK 55 (437)
T ss_dssp HHHHHHHHSCCHHH--HHHHHHHHHHHHHHHHH-----------------------------HTCCEEEEHHHHHTCCCT
T ss_pred HHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHH-----------------------------CCCEEEEECCCCCCCCCC
T ss_conf 99999761979899--99999999999999983-----------------------------787089813435897379
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCEEE
Q ss_conf 99743489963755457445566512466775999999964169998727872068997501699986988889997199
Q 003595 97 PAVNVDLFVGLPKECFHEKDYLNHRYHAKRCLYLCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPAVKSVEAPGFFV 176 (808)
Q Consensus 97 ~~~~VDl~V~mP~~~fq~KDylN~RY~~KRA~YLa~iA~~L~~~~~~~~v~~~~~~gd~~kPiL~l~p~~~~~~~~~~~I 176 (808)
+.-.|||.|-+|.+.= ++.|+. + .+..+-+.+++ ....|. -.|-+.+.-. ++.+
T Consensus 56 g~sDIDIfv~f~~~~~--~e~l~~-----~--~l~~~~e~l~~----~~~~ya------~hpyV~~~f~-------g~~v 109 (437)
T 1r89_A 56 GSLEIDVFLLFPEEFS--KEELRE-----R--GLEIGKAVLDS----YEIRYA------EHPYVHGVVK-------GVEV 109 (437)
T ss_dssp TCCEEEEEEEECTTSC--HHHHHH-----H--HHHHHHHHSSS----EEEEES------SSEEEEEEET-------TEEE
T ss_pred CCCCCEEEEECCCCCC--HHHHHH-----H--HHHHHHHHHHH----HHHHCC------CCCEEEEEEC-------CEEE
T ss_conf 9987029999389988--899988-----7--89999999987----640006------8866999866-------6589
Q ss_pred EEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9972489-766543347656786577889999889775113341037489999999982193889999999999998427
Q 003595 177 RIIPTAA-SLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKELGEALILLKVWARQRS 255 (808)
Q Consensus 177 Ri~~~~~-~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~p~f~dA~~LlKvWl~QRg 255 (808)
.|.||.. .. +...- +++ |. ...|.+++.+-..+ +++-++|+|-|+++-|
T Consensus 110 DVVP~y~v~~-------------------g~~~~-----tav--Dr-tp~H~~fv~~r~~~---~~~~VRLLK~f~k~~~ 159 (437)
T 1r89_A 110 DVVPCYKLKE-------------------PKNIK-----SAV--DR-TPFHHKWLEGRIKG---KENEVRLLKGFLKANG 159 (437)
T ss_dssp EEEEEECCSS-------------------SSCCC-----SHH--HH-HHHHHHHHTTTSTT---CHHHHHHHHHHHHHTT
T ss_pred EEEEEEECCC-------------------CCCCC-----CCC--CC-CHHHHHHHHHHHHH---HHHHHHHHHHHHHHCC
T ss_conf 9997787568-------------------76665-----523--58-68999999860143---2458799999998579
Q ss_pred CC---CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCE
Q ss_conf 77---678983279999999999301455878849999999999982388877724415899999884678766516998
Q 003595 256 SI---YVHDCLNGYLISILLSYLVSLDKINNSMKALQILRVVLDFIATSKLWNRGLYFPPKGQIGVSKEEKLQYKEAFPV 332 (808)
Q Consensus 256 ~~---~~~~gf~gf~~s~ll~~Ll~~~~l~~~~SsyQifr~~l~fLa~~d~~~~~i~~~~~~~~~~~~~~~~~f~~~f~v 332 (808)
.. ...+||+||.+=+|+++ |.-|+.+++.+++ |. .++...... .. ..| .-|+
T Consensus 160 ~ygse~k~~gfSsYllELLv~~-------------yG~f~~vl~~~~~--w~-~~~~Id~~~----~~---~~~--~~Pl 214 (437)
T 1r89_A 160 IYGAEYKVRGFSGYLCELLIVF-------------YGSFLETVKNARR--WT-RRTVIDVAK----GE---VRK--GEEF 214 (437)
T ss_dssp CBCCSTTTCCBCHHHHHHHHHH-------------HSSHHHHHHHHTT--CC-TTEEEEGGG----TE---EEE--CSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHH-------------HCCHHHHHHHHHH--HC-CCEEEECCC----CC---CCC--CCCE
T ss_conf 6787552788988999999999-------------8677999999997--07-971895177----75---357--8997
Q ss_pred EEECCCC-CEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCC----CCCCEEEEEECCCCCCCCC
Q ss_conf 8848998-32522479988899999999999996310388862012---24225665----6674899951388631011
Q 003595 333 VICDPSA-QVNLAFRMTSVGFCELQDEAASTLQCMDKCGDGGFEET---FLTKIDFP----AKYDYCVRLNLRGHTEVHA 404 (808)
Q Consensus 333 vf~D~sg-~~Nl~~~~t~~~~~~L~~eA~~tl~~Ld~~~~d~F~~l---Fl~~~~~~----~~fD~~~~i~~~~~~~~~~ 404 (808)
+.+||.- .-|+++.+|...+.++.++|+.-++. ++.+-|.+- .+.+.... .|=..++.+.....
T Consensus 215 vViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~~---ps~~~f~~~~~~~~~~~~~~~~~~~r~t~~~~~~f~~p----- 286 (437)
T 1r89_A 215 FVVDPVDEKRNVAANLSLDNLARFVHLCREFMEA---PSLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKP----- 286 (437)
T ss_dssp EEEETTEEEEETTTTCCHHHHHHHHHHHHHHHHS---CCGGGGSCCCCCCCCHHHHHHHHHHHTCEEEEEEEECC-----
T ss_pred EEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHC---CCHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-----
T ss_conf 9879989987420007899999999999999967---62976589775666778999998747967999997899-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCCCCCCC
Q ss_conf 24688614689999999999996420454328997059998643457877689974599999478111000023599999
Q 003595 405 LGFCLDDECWRLYEQKVHSLLNQGLVDRAKSIRVTWRNSPSEWNIENGLAVLDREPLLVGISVSSLEKLFRIVDIGPNAE 484 (808)
Q Consensus 405 ~~~~~~~~~~~~~~~~i~~lL~raLgdR~~~i~~~~~~~~~~w~i~~~~~~~~~~~i~iGl~l~~~~~a~r~vd~GP~ad 484 (808)
. .-++..|.++. +..+-+.+.|..+= +.+.+.. . .|. +....+-+.+...+--.-.+-.|||.-
T Consensus 287 -~-~~~D~l~pQl~-k~~~~i~~~L~~~g--F~v~~~~-~-~~~---------~~~~~l~~e~~~~~lp~~~~~~GPpv~ 350 (437)
T 1r89_A 287 -D-IVDDNLYPQLE-RASRKIFEFLEREN--FMPLRSA-F-KAS---------EEFCYLLFECQIKEISRVFRRMGPQFE 350 (437)
T ss_dssp -S-CCHHHHHHHHH-HHHHHHHHHHHHTT--CCEEEEE-E-EEC---------SSEEEEEEEESCSCCCSEEEEEEEETT
T ss_pred -C-CCCCCCHHHHH-HHHHHHHHHHHHCC--CEEEEEC-C-CCC---------CCEEEEEEEECCCCCCCEEEEECCCCC
T ss_conf -9-99654038999-99999999999789--8899852-4-233---------871699999734556873675488866
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 98999999832168
Q 003595 485 NKEEALRFRKFWGE 498 (808)
Q Consensus 485 ~~~eA~~FR~FWG~ 498 (808)
..+.|..|.+=+.+
T Consensus 351 ~~~~~~~F~~k~~~ 364 (437)
T 1r89_A 351 DERNVKKFLSRNRA 364 (437)
T ss_dssp CHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHCCC
T ss_conf 15569999985477
No 10
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=1.00 E-value=1 Score=72.77 Aligned_cols=186 Identities=12% Similarity=0.133 Sum_probs=115.7
Q ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEE
Q ss_conf 68502008987500468987010157999999999977039998888954467321225984048997188402673002
Q 003595 10 TDPMDYKVEELLKEVHFARAPAITKLVDDTVSAVRKSISKIPDAFPVTADLAPGFVRDIGADKVEFKFNKPKTFKIGGSY 89 (808)
Q Consensus 10 ~~~f~LQidELL~ev~~~~~~~~~~~~~~~l~~lk~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~f~f~~P~~v~vvGS~ 89 (808)
.+-|--+|.++.+.++|.... ...-+.++.+++++|.++ + |-..|.+.||+
T Consensus 4 ~~~lt~EI~dFy~~i~PT~eE--~~~R~~vv~~l~~ii~~~-------------~--------------p~~~v~~FGS~ 54 (384)
T 3hj4_A 4 KREFIRGMMAHYRASLPPPEH--SVVIHELQKRVLDIGMLA-------------V--------------NKAHVELFGSH 54 (384)
T ss_dssp HHHHHHHHHHHHHHHSCCTTH--HHHHHHHHHHHHHHHHHH-------------S--------------TTCEEEEESHH
T ss_pred HHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHH-------------C--------------CCCEEEEEEEC
T ss_conf 667899999999973999899--999999999999999987-------------8--------------99679995145
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHH-HHH---HHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 0122347997434899637554574455665124667-759---999999641699987278720689975016999869
Q 003595 90 SINCVVKPAVNVDLFVGLPKECFHEKDYLNHRYHAKR-CLY---LCVIKKHLKSSPSFDKVEWSAMQNEARKPVLVVYPA 165 (808)
Q Consensus 90 ~l~t~~k~~~~VDl~V~mP~~~fq~KDylN~RY~~KR-A~Y---La~iA~~L~~~~~~~~v~~~~~~gd~~kPiL~l~p~ 165 (808)
..|... |+-.+||.|..|..- +++.. ..++ +.+ ++.++..+... .+..+.. -.++-||+...-.
T Consensus 55 ~tgl~l-p~SDiDlvI~~~~~~----~~~~~--~~~~~~~~~lrll~L~k~~~~~-~ie~V~i----i~ARVPIIKf~d~ 122 (384)
T 3hj4_A 55 VSGFCT-PHSDADISLTYRNFS----PWLQG--MERVDEQNNKRMTRFGKEASAM-GMEDVRY----IRARIPVVQFTDG 122 (384)
T ss_dssp HHSCCC-TTCCEEEEEECTTCC----GGGTT--CHHHHHHHHHHHHHHHHHHHHH-TCEEEEE----ECSSSCEEEEECT
T ss_pred CCCCCC-CCCCEEEEEECCCCC----CCCCC--CCHHHHHHHHHHHHHHHHCCCC-CEEEEEE----CCCCCCEEEEEEC
T ss_conf 578989-999856999637876----42232--1105678899999997304337-7058733----4864577999986
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCHHH-HHHHH
Q ss_conf 88889997199997248976654334765678657788999988977511334103748999999998219388-99999
Q 003595 166 VKSVEAPGFFVRIIPTAASLFNIAKLNLKRNNVRAFNQDGIPRATPKYNSSILEDMFLEDNAEYVEKTISRWKE-LGEAL 244 (808)
Q Consensus 166 ~~~~~~~~~~IRi~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~pTP~YNssil~D~~~~~~l~~l~~~~~~~p~-f~dA~ 244 (808)
. ++..+.|-..-. ...+|+ .++....+..|. ++.-+
T Consensus 123 ~-----tgi~~DIS~nn~--------------------------~gi~ns------------~ll~~y~~~~p~rlr~Lv 159 (384)
T 3hj4_A 123 V-----TGIHCDVSIGNI--------------------------GGVENS------------KILCAIRQVFPDFYGAYI 159 (384)
T ss_dssp T-----TCCEEEEEECCH--------------------------HHHHHH------------HHHHHHHHTSHHHHHHHH
T ss_pred C-----CCEEEEEEECCC--------------------------CHHHHH------------HHHHHHHHCCCHHHHHHH
T ss_conf 8-----890798996265--------------------------048999------------999998742869899999
Q ss_pred HHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999984277767-89832799999999993014
Q 003595 245 ILLKVWARQRSSIYV-HDCLNGYLISILLSYLVSLD 279 (808)
Q Consensus 245 ~LlKvWl~QRg~~~~-~~gf~gf~~s~ll~~Ll~~~ 279 (808)
+++|.|+++||++.. .||+++|.|.+|+++-+|..
T Consensus 160 llvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~ 195 (384)
T 3hj4_A 160 HLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQEL 195 (384)
T ss_dssp HHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999999998389976689940899999999999438
Done!