Query 003597
Match_columns 808
No_of_seqs 266 out of 688
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 6.1E-74 1.3E-78 688.4 26.4 538 11-576 69-622 (904)
2 KOG0958 DNA damage-responsive 100.0 3.4E-73 7.4E-78 639.8 15.6 310 29-419 12-322 (690)
3 PF02373 JmjC: JmjC domain, hy 100.0 8.3E-33 1.8E-37 252.1 10.1 114 272-388 1-114 (114)
4 smart00545 JmjN Small domain f 99.8 1.4E-19 3.1E-24 141.6 4.6 42 31-72 1-42 (42)
5 PF02375 JmjN: jmjN domain; I 99.6 3.6E-16 7.9E-21 117.2 2.8 34 33-66 1-34 (34)
6 PF02928 zf-C5HC2: C5HC2 zinc 99.6 1.8E-15 3.9E-20 124.6 4.2 54 495-548 1-54 (54)
7 smart00558 JmjC A domain famil 99.3 1.7E-12 3.8E-17 106.8 3.6 56 244-302 2-57 (57)
8 KOG1246 DNA-binding protein ju 98.4 2E-07 4.2E-12 114.4 3.7 177 242-426 604-789 (904)
9 PF13621 Cupin_8: Cupin-like d 96.8 0.0018 3.8E-08 66.4 5.2 110 270-391 132-248 (251)
10 KOG2131 Uncharacterized conser 96.5 0.0053 1.1E-07 68.2 6.7 105 272-392 201-305 (427)
11 KOG1356 Putative transcription 94.4 0.049 1.1E-06 66.0 5.4 113 303-416 740-859 (889)
12 KOG2130 Phosphatidylserine-spe 93.7 0.038 8.2E-07 60.7 2.3 130 255-395 166-303 (407)
13 PF08007 Cupin_4: Cupin superf 89.0 1.6 3.4E-05 48.3 8.7 104 269-397 114-218 (319)
14 smart00154 ZnF_AN1 AN1-like Zi 55.4 5.9 0.00013 31.1 1.0 33 495-529 1-35 (39)
15 COG2461 Uncharacterized conser 31.0 29 0.00063 39.9 2.0 43 30-74 198-240 (409)
16 COG1791 Uncharacterized conser 24.4 57 0.0012 33.8 2.5 42 349-395 112-160 (181)
17 TIGR03792 uncharacterized cyan 20.9 1.3E+02 0.0028 28.1 3.9 48 306-368 7-54 (90)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=6.1e-74 Score=688.43 Aligned_cols=538 Identities=43% Similarity=0.697 Sum_probs=441.1
Q ss_pred cccccccccCCCccCCCCCCCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceeecCCCCCCCCCCCcccccccccccccc
Q 003597 11 HIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTR 90 (808)
Q Consensus 11 ~~~~v~~~~~P~~~~~~~i~e~PVF~PT~EEF~Dpl~YI~kI~~~aekyGIcKIVPP~~W~Pp~~l~~~~i~~~~kF~tr 90 (808)
...++...+.+..+.+......+.+.+....|.|...|+..++..++.+|+|.++||..|++++++..+..|...+|.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (904)
T KOG1246|consen 69 TLEVDFYSDLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQR 148 (904)
T ss_pred ccccchhhhhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCc
Confidence 34455556666777777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccchhcccccccchhhhh------h-hhhhhccccccccccCCC-CC-Cc---cccccccccccccccCC-CCCHHHHH
Q 003597 91 -IQQIDLLQNREPMRKKIR------S-RKRKRRRQSRMGSTRRNA-NS-SS---EANAAETDEKFGFQSGP-DLTLEGFQ 156 (808)
Q Consensus 91 -iQ~v~~Lq~r~p~~k~~~------~-~k~k~~~~~~~~~~~r~~-~s-~s---~~~~~~~~e~fgF~~G~-~~Tl~eF~ 156 (808)
+|.++..+.+...+.... + .+..+......+..+... .- +. ........+.|||..|. .||+..|+
T Consensus 149 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~ 228 (904)
T KOG1246|consen 149 EVEFIDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFE 228 (904)
T ss_pred ccccccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhh
Confidence 888776665544433321 0 111111111111111000 00 00 00123346889998876 99999999
Q ss_pred HHHHHHHHhhhCCCCCCCCcccCccccccCCCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCC-C
Q 003597 157 KYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTE-S 235 (808)
Q Consensus 157 k~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~-~ 235 (808)
++|+.|+..||....... ++.+++|++||++|......++|+||+|+.+..+|||||........ +
T Consensus 229 ~~~~~~~~~~~~~~~~~~-------------~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~ 295 (904)
T KOG1246|consen 229 EYADNFKKDYFPKSKNSP-------------DSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGS 295 (904)
T ss_pred hHhhhhhccccccccCCC-------------CchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCc
Confidence 999999999998765432 33789999999999999889999999999999999999987654333 4
Q ss_pred chhhhhccCcccCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHH
Q 003597 236 DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (808)
Q Consensus 236 ~~~~y~~~~WNLnnLp~~~gSLL~~~~~~I~GVntP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~k 315 (808)
..++|..++|||+++|++++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++
T Consensus 296 ~~~~y~~s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~ 375 (904)
T KOG1246|consen 296 EAEKYSNSGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEK 375 (904)
T ss_pred chhhhccCcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhhcCchhhhhcccccChhhHhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecccccchhh
Q 003597 316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (808)
Q Consensus 316 FE~l~k~~~p~~~~~~pd~L~h~~t~isP~~L~k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~ 395 (808)
||+++++..|+++..+|++++.+.++++|..|..+|||+++++|+|||||||||++||+||++|||++|+|||||.+||+
T Consensus 376 ~e~~~~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~ 455 (904)
T KOG1246|consen 376 FEKAMNKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLP 455 (904)
T ss_pred HHHHHHhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhhhh-ccCCCCcchhhhcccchhhHHHHHHHHHHHHhhcccC
Q 003597 396 HGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKL 474 (808)
Q Consensus 396 ~g~~a~e~y~~~~r~~~fs~d~LL~~~A~~~~~~l~el~l~~-k~~~~~~~~~~~c~~~~il~~~~k~r~~~e~~~~~~l 474 (808)
+|+.++++|+...+.++|||++|++.+|...+...+.+.+.. ++......|...+...+.....+..+ ++...+.+
T Consensus 456 ~gr~~~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 532 (904)
T KOG1246|consen 456 VGRGAAEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESL 532 (904)
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhc
Confidence 999999999999999999999999999998776555443322 11112223333333333322222111 11111111
Q ss_pred chhhhhhhcccccCCccccccccccccchhccccccccCCccccccchhhhcCCCCCceEEEEecCHHHHHHHHHHHHhc
Q 003597 475 PSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGG 554 (808)
Q Consensus 475 ~~~~~~~k~~~~~d~~~er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv~~le~~ 554 (808)
+ |+..+++|..|+++||++++.|+|.+.+..||.|..++|+|....++++|||++++|..++.+++++
T Consensus 533 ~------------~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~ 600 (904)
T KOG1246|consen 533 P------------DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLH 600 (904)
T ss_pred c------------chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhh
Confidence 0 2223899999999999999999999899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhhhccCCCCC
Q 003597 555 LDALKELASKNFKWADCSDTDG 576 (808)
Q Consensus 555 ~~~~~~W~~~~~~~l~~~~~~~ 576 (808)
...+..|..++.+++.......
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~ 622 (904)
T KOG1246|consen 601 ELSKLPWFGRVDGALPSLGFRG 622 (904)
T ss_pred hhhcchhhhhhhhhhcccccCC
Confidence 9999999999999987665555
No 2
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=3.4e-73 Score=639.80 Aligned_cols=310 Identities=36% Similarity=0.684 Sum_probs=259.4
Q ss_pred CCCCCccCCCHHhhhCHHHHHHHHHHhhhh-cCceeecCCCCCCCCCCCccccccccccccccccchhcccccccchhhh
Q 003597 29 IDEAPVFYPTVEEFEDTLGYIAKIRSKAES-FGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKI 107 (808)
Q Consensus 29 i~e~PVF~PT~EEF~Dpl~YI~kI~~~aek-yGIcKIVPP~~W~Pp~~l~~~~i~~~~kF~triQ~v~~Lq~r~p~~k~~ 107 (808)
.+++||||||||||+||.+||+.|+.+|.+ +||+|||||++|+|+...+ +| +++++++.+|++-.-+.+-.
T Consensus 12 s~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~--di-~di~I~~PiqQ~v~g~~G~F----- 83 (690)
T KOG0958|consen 12 SDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYD--DI-DDIKIPAPIQQVVTGQGGLF----- 83 (690)
T ss_pred CCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccC--ch-hheecChhHHHHhhccCceE-----
Confidence 678999999999999999999999999755 9999999999999987654 22 56788888877653221110
Q ss_pred hhhhhhhccccccccccCCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHHhhhCCCCCCCCcccCccccccCC
Q 003597 108 RSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLE 187 (808)
Q Consensus 108 ~~~k~k~~~~~~~~~~~r~~~s~s~~~~~~~~e~fgF~~G~~~Tl~eF~k~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ 187 (808)
..+..+..+.|++.+|+++|+. .+ |..+.. .
T Consensus 84 --------------------------------~~~Ni~~~kam~v~q~r~lAns--~~-y~tpr~--------------~ 114 (690)
T KOG0958|consen 84 --------------------------------TQYNIQDKKAMTVRQFRDLANS--DK-YCTPRG--------------S 114 (690)
T ss_pred --------------------------------EEeehhhccccChhhhhhhhhh--cc-cCCCcc--------------c
Confidence 0112233457999999999986 22 222110 1
Q ss_pred CCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCCCchhhhhccCcccCCCCCCCCCcccccCCCCCC
Q 003597 188 PSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISG 267 (808)
Q Consensus 188 ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~~~gSLL~~~~~~I~G 267 (808)
-..+|+|++||+.+.. +.+.||||+.+++| + |....||+++|+...+- ...+..|.|
T Consensus 115 ~d~~dle~kYWKnltf----~~PiYGaD~~gSi~----~-------------~~~~~WNi~~L~tild~--~~~~~~i~g 171 (690)
T KOG0958|consen 115 QDFEDLEQKYWKNLTF----DSPIYGADINGSIY----D-------------EDLDEWNIARLDTILDL--EECGIIIEG 171 (690)
T ss_pred ccHHHHHHHHHhcccC----CCCcccccCCCccC----c-------------ccccccccccccchhch--hhcceeecc
Confidence 2468999999999985 57899999986444 2 22579999999864221 578889999
Q ss_pred cccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHhhcchhhhcCchhhhhcccccChhhH
Q 003597 268 VLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVL 347 (808)
Q Consensus 268 VntP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~kFE~l~k~~~p~~~~~~pd~L~h~~t~isP~~L 347 (808)
||||+||+|||.++|+||+||++||||||+|||+||+||+||++|.++||+++.+.+|+...+|++||+|++++++|.+|
T Consensus 172 vNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK~~LiSP~~L 251 (690)
T KOG0958|consen 172 VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHKMTLISPSVL 251 (690)
T ss_pred cCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecccccchhhhHHHHHHHHHhccCCCCCcHHHHH
Q 003597 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLL 419 (808)
Q Consensus 348 ~k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fs~d~LL 419 (808)
+++|||+++++|++||||||||++||+|||+||||+|++|||++.|+++|+.|..|-+. ...--||++.+.
T Consensus 252 kqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~C~-~d~vkism~~fv 322 (690)
T KOG0958|consen 252 KQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLCSCR-SDSVKISMDPFV 322 (690)
T ss_pred HHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcccccccccc-cceeeeechhhh
Confidence 99999999999999999999999999999999999999999999999999999987443 223345666653
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.98 E-value=8.3e-33 Score=252.14 Aligned_cols=114 Identities=46% Similarity=0.774 Sum_probs=101.3
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHhhcchhhhcCchhhhhcccccChhhHhhCC
Q 003597 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (808)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~kFE~l~k~~~p~~~~~~pd~L~h~~t~isP~~L~k~G 351 (808)
|||+||.+|+++||+||+.++||||+|+|++|+||+||++++++|++++++. ...++++++.+...++.|+.|+++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 7999999999999999999999999999999999999999999999999988 3457889999999999999999999
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeeecccceeeeecc
Q 003597 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV 388 (808)
Q Consensus 352 Ipv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNF 388 (808)
||+++++|+|||+|||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 4
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.78 E-value=1.4e-19 Score=141.58 Aligned_cols=42 Identities=67% Similarity=1.376 Sum_probs=41.1
Q ss_pred CCCccCCCHHhhhCHHHHHHHHHHhhhhcCceeecCCCCCCC
Q 003597 31 EAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTP 72 (808)
Q Consensus 31 e~PVF~PT~EEF~Dpl~YI~kI~~~aekyGIcKIVPP~~W~P 72 (808)
++||||||+|||+||++||++|+++|++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999987
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.60 E-value=3.6e-16 Score=117.24 Aligned_cols=34 Identities=59% Similarity=1.248 Sum_probs=27.8
Q ss_pred CccCCCHHhhhCHHHHHHHHHHhhhhcCceeecC
Q 003597 33 PVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVP 66 (808)
Q Consensus 33 PVF~PT~EEF~Dpl~YI~kI~~~aekyGIcKIVP 66 (808)
||||||+|||+||++||++|+++|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 6
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.56 E-value=1.8e-15 Score=124.59 Aligned_cols=54 Identities=41% Similarity=0.835 Sum_probs=52.2
Q ss_pred cccccccchhccccccccCCccccccchhhhcCCCCCceEEEEecCHHHHHHHH
Q 003597 495 CFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLV 548 (808)
Q Consensus 495 C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv 548 (808)
|.+||++||||+|.|+|++++++||+|+.++|+|++++++|+|||+++||++||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999999999999999999999999999999999999999885
No 7
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.29 E-value=1.7e-12 Score=106.76 Aligned_cols=56 Identities=43% Similarity=0.590 Sum_probs=53.6
Q ss_pred CcccCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCc
Q 003597 244 GWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDP 302 (808)
Q Consensus 244 ~WNLnnLp~~~gSLL~~~~~~I~GVntP~LYiGM~fStf~WH~ED~~L~SINYlH~Gap 302 (808)
.||++++|. .+++|++++.+++|+++||+|+||++|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 799999999 89999999999999999999999999999999999999 999999863
No 8
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.36 E-value=2e-07 Score=114.43 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=146.1
Q ss_pred ccCcccCCCCCCC-----C-CcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHH
Q 003597 242 MSGWNLNNLPRLP-----G-SVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (808)
Q Consensus 242 ~~~WNLnnLp~~~-----g-SLL~~~~~~I~GVntP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~k 315 (808)
..+|...-.-.++ + ++|.+++..+-||++..+|+...++.+.-|.|...+.++|.++..+.+.|++||.+++..
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 4577665443332 4 889999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHhhcchhhhcCchhhhhccccc-ChhhHhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecccccchh
Q 003597 316 LEKAMRKHLPDLFEEQPDLLHELVTQL-SPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWL 394 (808)
Q Consensus 316 FE~l~k~~~p~~~~~~pd~L~h~~t~i-sP~~L~k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL 394 (808)
+++++.+.-- .++.. ..|. +-..|...+|++++++|++|++|.++.+.|||....||..+.++|.+...--
T Consensus 684 ~~~~~~~~~~-------~~~~~-~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~ 755 (904)
T KOG1246|consen 684 VEDACEKHNL-------KYSDS-SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFA 755 (904)
T ss_pred HHHHHhhccc-------cccch-hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchh
Confidence 9999877521 11222 3344 5678999999999999999999999999999999999999999999998864
Q ss_pred hh--HHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Q 003597 395 AH--GQQAVELYSEQHRKTSLSHDKLLFGSVQAA 426 (808)
Q Consensus 395 ~~--g~~a~e~y~~~~r~~~fs~d~LL~~~A~~~ 426 (808)
++ ....+.+.........+++..+-|++|+..
T Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (904)
T KOG1246|consen 756 QLALALFRHDHNIESKHPSSVPMSFKVWEMAEKE 789 (904)
T ss_pred hhhcchhhhhhhhhccCcccchhhhhhhhHhhcc
Confidence 43 334444444557788999999999999863
No 9
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.76 E-value=0.0018 Score=66.42 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=65.5
Q ss_pred cceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHhhcchhh----hcCchhhhhcccccChh
Q 003597 270 VPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLF----EEQPDLLHELVTQLSPS 345 (808)
Q Consensus 270 tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~kFE~l~k~~~p~~~----~~~pd~L~h~~t~isP~ 345 (808)
..+|+||..+|.+.||.+. ...++-+..| .|.|+-+||.+...+... +..- -...++. ....-..|.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G-~K~~~L~pP~~~~~l~~~-----~~~~~~~~~~~~d~~-~~d~~~~p~ 202 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRG-RKRWILFPPDDSPNLYPR-----PDSHGGTVFSWVDPD-NPDLERFPK 202 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEES-EEEEEEE-GGGGGGCTBE-----TTTST-TCBBSS-TT-S--TTT-CG
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCC-CEEEEEECCccccccccc-----eecccccceeeeecc-Chhhhhhhh
Confidence 5579999999999999877 4466666677 599999999986533111 1000 0000100 000011122
Q ss_pred hHhhCCCCeeEeecCCCcEEEEcCCcceeeeec---ccceeeeeccccc
Q 003597 346 VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNC---GFNCAEAVNVAPV 391 (808)
Q Consensus 346 ~L~k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~---GfN~aEAVNFA~~ 391 (808)
+.+ ++.+.++++|||.+++-+|-+|.+.|. +++++..+.|-+.
T Consensus 203 -~~~--~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 203 -FRK--APPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp -GGG----EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred -hcc--CceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 222 389999999999999999999999999 4677777766553
No 10
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.47 E-value=0.0053 Score=68.19 Aligned_cols=105 Identities=22% Similarity=0.183 Sum_probs=77.7
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHhhcchhhhcCchhhhhcccccChhhHhhCC
Q 003597 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (808)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~kFE~l~k~~~p~~~~~~pd~L~h~~t~isP~~L~k~G 351 (808)
-.|+|-.+|+++.|.+=-.-+|---+..| -|.|..+||.+..++-....++ | .-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~dr~gnl--------p-------~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLADRYGNL--------P-------LPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhhhccCc--------C-------Cccccccccccc
Confidence 57999999999999666555555555667 6889999999855543332111 1 112223577778
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeeecccceeeeecccccc
Q 003597 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVD 392 (808)
Q Consensus 352 Ipv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~d 392 (808)
.|.+.+.|+|||.|++--|=||.+.|.|-.++..=|..-..
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~ 305 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNAT 305 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeecccccccc
Confidence 88899999999999999999999999999988776554443
No 11
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=94.45 E-value=0.049 Score=65.98 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=82.4
Q ss_pred eeEEEeCcccHHHHHHHHHhhcchhhhcCc---hhhhhcccccCh----hhHhhCCCCeeEeecCCCcEEEEcCCcceee
Q 003597 303 KIWYGVPGSHASTLEKAMRKHLPDLFEEQP---DLLHELVTQLSP----SVLKAEGVPVYHVVQHSGEFVLTFPRAYHSG 375 (808)
Q Consensus 303 K~WY~VP~~~a~kFE~l~k~~~p~~~~~~p---d~L~h~~t~isP----~~L~k~GIpv~r~vQ~pGEfVVTfPgaYHsg 375 (808)
-.|=+....++.|++++++++-.+.-...+ +=++...+.+.- ....+.||.-..++|..||.||+-.||.|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 479999999999999999998654321111 112233344443 2455689999999999999999999999999
Q ss_pred eecccceeeeecccccchhhhHHHHHHHHHhccCCCCCcHH
Q 003597 376 FNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHD 416 (808)
Q Consensus 376 fn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fs~d 416 (808)
.|.--++..|+.|..|.-+.....-.+-||.+- ...+.|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp-~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLP-QNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCC-CcccchH
Confidence 999999999999999998875544444444321 1255554
No 12
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.71 E-value=0.038 Score=60.66 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=88.2
Q ss_pred CCcccccCCC-CCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHhhcchhhhcCch
Q 003597 255 GSVLAFEGSD-ISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPD 333 (808)
Q Consensus 255 gSLL~~~~~~-I~GVntP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~kFE~l~k~~~p~~~~~~pd 333 (808)
..|+.+++.. =| ---|+-+|-..|-+.||++...+..-|-+..| -|.|.-+|+.--..+-+.. ++.-.+|++
T Consensus 166 dDlF~y~g~e~RP--pyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~d 238 (407)
T KOG2130|consen 166 DDLFQYLGEERRP--PYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQPD 238 (407)
T ss_pred HHHHHhcCcccCC--CceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCCc
Confidence 4566666533 11 13499999999999999999999999999888 6889999987533222211 111223332
Q ss_pred hhhhcccccChh-------hHhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecccccchhh
Q 003597 334 LLHELVTQLSPS-------VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (808)
Q Consensus 334 ~L~h~~t~isP~-------~L~k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~ 395 (808)
=. .||++-- .+-.+ -.-..++|.|||-|++--|=.|.++|.-..+|..-|||...=++
T Consensus 239 e~---itwf~~~y~rt~~Pswp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 239 EI---ITWFSTIYPRTQLPSWPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred ce---echhhhccccccCCCCccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 11 1111110 01112 22346889999999999999999999999999999999877554
No 13
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=89.03 E-value=1.6 Score=48.30 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=67.2
Q ss_pred ccceEEeeccc-ccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHhhcchhhhcCchhhhhcccccChhhH
Q 003597 269 LVPWLYVGMCF-SSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVL 347 (808)
Q Consensus 269 ntP~LYiGM~f-Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a~kFE~l~k~~~p~~~~~~pd~L~h~~t~isP~~L 347 (808)
..-.+|++-.+ ..|++|.++++..-| -.-+.|.|..-++.. + ...+..+ .+-..
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~~dvfvl---Q~~G~K~W~l~~~~~------------~-----~~~~~~~-----~~~~~ 168 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDDHDVFVL---QLEGRKRWRLYPPPD------------E-----PAPLYSD-----QPFKQ 168 (319)
T ss_dssp EEEEEEEETSSBEESECEE-SSEEEEE---EEES-EEEEEE-SCC------------C-----TTTSSCE-------TTT
T ss_pred cceEEEecCCCCCCccCEECCcccEEE---ECCceeEEEECCCCc------------c-----cccccCC-----CCccc
Confidence 45578999988 589999999866654 355689999987211 0 0000000 01111
Q ss_pred hhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecccccchhhhH
Q 003597 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHG 397 (808)
Q Consensus 348 ~k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g 397 (808)
.+..-|+..++=+||++++.-+|.+|.+.+.|.++.-+++|-++.|..+-
T Consensus 169 ~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 169 LEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp CG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred cccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 23336788999999999999999999999999999999999999998753
No 14
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=55.37 E-value=5.9 Score=31.07 Aligned_cols=33 Identities=24% Similarity=0.587 Sum_probs=25.9
Q ss_pred cccccccchhcccccc-ccCCccccccchh-hhcCCC
Q 003597 495 CFSCFYDLHLSAAGCK-CSPDRFACLKHAN-IFCSCE 529 (808)
Q Consensus 495 C~~Ck~~cfLS~V~C~-C~~~~v~CL~Ha~-~lCsC~ 529 (808)
|.+|+...+|..+.|. |. .++|+.|-. +..+|+
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR~~e~H~C~ 35 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHRLPEDHDCP 35 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccCCccccCCc
Confidence 7889999999889999 85 689999963 234454
No 15
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=30.95 E-value=29 Score=39.92 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=35.3
Q ss_pred CCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceeecCCCCCCCCC
Q 003597 30 DEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPC 74 (808)
Q Consensus 30 ~e~PVF~PT~EEF~Dpl~YI~kI~~~aekyGIcKIVPP~~W~Pp~ 74 (808)
.+.-+||||.-+--++-.| ..|+.+-..+|-+||.|| .|+|.-
T Consensus 198 kEe~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~ 240 (409)
T COG2461 198 KEENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKK 240 (409)
T ss_pred hhhhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCcc
Confidence 3667899998887776665 468888899999999999 999964
No 16
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=24.43 E-value=57 Score=33.79 Aligned_cols=42 Identities=29% Similarity=0.562 Sum_probs=32.0
Q ss_pred hCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecc-------cccchhh
Q 003597 349 AEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV-------APVDWLA 395 (808)
Q Consensus 349 k~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNF-------A~~dWL~ 395 (808)
...=+++.+.-.+|+++.+-||.||| |.+.++-|| +++.|.+
T Consensus 112 ~~d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa 160 (181)
T COG1791 112 SPDGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVA 160 (181)
T ss_pred CCCCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCcee
Confidence 34457899999999999999999998 445555555 5677765
No 17
>TIGR03792 uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown.
Probab=20.92 E-value=1.3e+02 Score=28.06 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=36.9
Q ss_pred EEeCcccHHHHHHHHHhhcchhhhcCchhhhhcccccChhhHhhCCCCeeEeecCCCcEEEEc
Q 003597 306 YGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTF 368 (808)
Q Consensus 306 Y~VP~~~a~kFE~l~k~~~p~~~~~~pd~L~h~~t~isP~~L~k~GIpv~r~vQ~pGEfVVTf 368 (808)
+-||+...+.|+++.+...-..+..++.|+.+. |.+....|+++++..
T Consensus 7 ~~V~p~~~~~f~~a~~~~w~~~l~~~~GFlg~e---------------v~~~~e~pee~~llI 54 (90)
T TIGR03792 7 FKVPPEDREAFLEADEEIWTPWLAKQPGFLGKE---------------VWWDPEKPEEGVLLI 54 (90)
T ss_pred EeeChhhHHHHHHHHHHHHHHHHHhCCCccceE---------------EEecCCCCCEEEEEE
Confidence 458999999999999998666677788887653 445556688888763
Done!