Query 003601
Match_columns 808
No_of_seqs 515 out of 3501
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02610 probable methionyl-tR 100.0 4E-175 1E-179 1545.2 79.6 791 15-808 10-801 (801)
2 PRK00133 metG methionyl-tRNA s 100.0 1E-139 3E-144 1241.0 65.2 663 22-749 2-673 (673)
3 COG0143 MetG Methionyl-tRNA sy 100.0 8E-135 2E-139 1142.5 54.1 544 20-588 3-554 (558)
4 PRK12267 methionyl-tRNA synthe 100.0 2E-131 5E-136 1169.7 64.2 635 21-749 3-648 (648)
5 KOG1247 Methionyl-tRNA synthet 100.0 4E-117 9E-122 917.8 30.1 561 13-594 5-565 (567)
6 PRK12268 methionyl-tRNA synthe 100.0 2E-108 5E-113 961.2 54.0 547 21-592 2-554 (556)
7 PLN02224 methionine-tRNA ligas 100.0 9E-108 2E-112 943.9 53.6 508 21-585 68-587 (616)
8 TIGR00398 metG methionyl-tRNA 100.0 1E-107 2E-112 950.1 53.8 525 24-579 1-530 (530)
9 KOG0436 Methionyl-tRNA synthet 100.0 7E-106 2E-110 835.5 37.5 479 20-541 37-531 (578)
10 PF09334 tRNA-synt_1g: tRNA sy 100.0 8E-101 2E-105 851.2 23.2 385 24-418 1-391 (391)
11 PRK11893 methionyl-tRNA synthe 100.0 6E-95 1.3E-99 842.2 52.1 502 22-580 1-510 (511)
12 TIGR00422 valS valyl-tRNA synt 100.0 4E-85 8.7E-90 796.5 43.7 507 9-538 18-701 (861)
13 PRK14900 valS valyl-tRNA synth 100.0 1.3E-82 2.9E-87 778.5 43.5 505 9-537 32-715 (1052)
14 PRK13208 valS valyl-tRNA synth 100.0 3.7E-82 8.1E-87 765.0 45.7 504 9-536 23-705 (800)
15 PRK05729 valS valyl-tRNA synth 100.0 2.8E-80 6E-85 753.3 44.8 501 9-537 22-693 (874)
16 PLN02943 aminoacyl-tRNA ligase 100.0 1.3E-78 2.8E-83 738.6 45.8 509 9-537 73-771 (958)
17 PLN02882 aminoacyl-tRNA ligase 100.0 1.5E-77 3.2E-82 736.0 45.0 508 9-537 21-801 (1159)
18 TIGR00392 ileS isoleucyl-tRNA 100.0 7.8E-78 1.7E-82 733.4 41.7 494 19-538 33-792 (861)
19 PRK06039 ileS isoleucyl-tRNA s 100.0 5.1E-77 1.1E-81 729.0 43.3 497 19-537 38-772 (975)
20 PRK05743 ileS isoleucyl-tRNA s 100.0 1.7E-76 3.6E-81 719.2 41.4 492 19-536 46-769 (912)
21 COG0525 ValS Valyl-tRNA synthe 100.0 9.4E-76 2E-80 677.7 41.8 509 8-538 17-700 (877)
22 PTZ00419 valyl-tRNA synthetase 100.0 1.2E-75 2.7E-80 720.0 45.0 500 19-537 57-805 (995)
23 PRK13804 ileS isoleucyl-tRNA s 100.0 2.7E-74 5.8E-79 701.1 45.6 492 19-537 51-808 (961)
24 PLN02381 valyl-tRNA synthetase 100.0 7.2E-74 1.6E-78 700.0 45.5 509 9-537 113-872 (1066)
25 cd00814 MetRS_core catalytic c 100.0 4.1E-75 8.9E-80 633.7 30.5 316 23-393 1-319 (319)
26 PLN02843 isoleucyl-tRNA synthe 100.0 9.9E-74 2.1E-78 695.8 44.8 490 21-537 31-797 (974)
27 TIGR00395 leuS_arch leucyl-tRN 100.0 5.6E-74 1.2E-78 698.8 42.1 493 8-538 10-779 (938)
28 COG0060 IleS Isoleucyl-tRNA sy 100.0 5.1E-74 1.1E-78 671.5 36.2 498 18-538 45-781 (933)
29 cd00817 ValRS_core catalytic c 100.0 5.6E-74 1.2E-78 637.9 29.6 326 22-393 1-382 (382)
30 PTZ00427 isoleucine-tRNA ligas 100.0 1.5E-72 3.2E-77 688.8 44.5 513 9-537 85-906 (1205)
31 PRK00390 leuS leucyl-tRNA synt 100.0 3.3E-69 7.2E-74 647.8 39.7 443 22-537 32-723 (805)
32 TIGR00396 leuS_bact leucyl-tRN 100.0 4.2E-69 9.1E-74 647.8 38.8 450 19-537 26-759 (842)
33 PLN02563 aminoacyl-tRNA ligase 100.0 6.4E-69 1.4E-73 646.4 35.8 451 19-538 107-876 (963)
34 PRK12300 leuS leucyl-tRNA synt 100.0 4.6E-66 9.9E-71 626.9 37.5 461 37-538 1-733 (897)
35 cd00818 IleRS_core catalytic c 100.0 6.2E-66 1.3E-70 564.3 27.1 303 22-393 1-338 (338)
36 PLN02959 aminoacyl-tRNA ligase 100.0 2.2E-62 4.8E-67 600.8 42.8 479 21-535 44-877 (1084)
37 cd00668 Ile_Leu_Val_MetRS_core 100.0 2.6E-63 5.7E-68 540.3 27.1 294 23-393 1-312 (312)
38 COG0495 LeuS Leucyl-tRNA synth 100.0 4.5E-62 9.8E-67 567.1 33.1 461 9-538 18-734 (814)
39 cd00812 LeuRS_core catalytic c 100.0 1.3E-62 2.7E-67 533.7 23.4 293 23-395 1-314 (314)
40 KOG0433 Isoleucyl-tRNA synthet 100.0 4.1E-58 8.8E-63 506.2 38.1 486 19-538 56-798 (937)
41 KOG0432 Valyl-tRNA synthetase 100.0 1.4E-58 3.1E-63 520.1 34.4 502 11-536 61-807 (995)
42 PF00133 tRNA-synt_1: tRNA syn 100.0 3.2E-58 6.9E-63 539.3 22.7 364 18-394 19-601 (601)
43 KOG0435 Leucyl-tRNA synthetase 100.0 9.3E-57 2E-61 491.4 24.7 457 19-538 55-782 (876)
44 KOG0434 Isoleucyl-tRNA synthet 100.0 1.1E-52 2.4E-57 458.2 27.7 501 18-537 34-785 (1070)
45 PTZ00399 cysteinyl-tRNA-synthe 100.0 7.9E-52 1.7E-56 482.3 36.4 404 8-518 46-463 (651)
46 PRK14536 cysS cysteinyl-tRNA s 100.0 7.7E-52 1.7E-56 464.1 31.6 383 8-484 9-404 (490)
47 PLN02946 cysteine-tRNA ligase 100.0 3.7E-51 8E-56 462.6 31.3 376 8-488 66-444 (557)
48 PRK00260 cysS cysteinyl-tRNA s 100.0 3.5E-50 7.7E-55 456.6 34.9 364 8-488 9-376 (463)
49 PRK12418 cysteinyl-tRNA synthe 100.0 7.5E-51 1.6E-55 444.0 25.0 351 21-490 9-366 (384)
50 TIGR00435 cysS cysteinyl-tRNA 100.0 4.6E-50 1E-54 454.3 32.3 364 8-483 7-375 (465)
51 PRK14534 cysS cysteinyl-tRNA s 100.0 4.2E-50 9E-55 447.6 31.3 377 8-485 9-398 (481)
52 TIGR03447 mycothiol_MshC cyste 100.0 1.1E-50 2.4E-55 444.1 25.7 357 8-484 24-387 (411)
53 KOG2241 tRNA-binding protein [ 100.0 1.8E-51 3.8E-56 411.2 16.5 169 640-808 87-255 (255)
54 PRK14535 cysS cysteinyl-tRNA s 100.0 8.4E-49 1.8E-53 444.0 31.5 361 8-485 234-613 (699)
55 COG0215 CysS Cysteinyl-tRNA sy 100.0 3E-48 6.6E-53 422.6 28.5 365 8-488 8-377 (464)
56 KOG2007 Cysteinyl-tRNA synthet 100.0 2.5E-42 5.5E-47 369.0 31.4 380 7-490 40-428 (586)
57 PF01406 tRNA-synt_1e: tRNA sy 100.0 9E-44 1.9E-48 370.5 14.2 289 20-401 7-298 (300)
58 cd00672 CysRS_core catalytic c 100.0 6.5E-39 1.4E-43 326.5 17.5 206 8-394 6-213 (213)
59 KOG0437 Leucyl-tRNA synthetase 100.0 2.7E-36 5.9E-41 332.7 26.5 484 18-539 40-872 (1080)
60 PRK01611 argS arginyl-tRNA syn 100.0 1E-34 2.2E-39 334.8 29.8 337 20-489 109-468 (507)
61 cd00674 LysRS_core_class_I cat 100.0 5.5E-34 1.2E-38 308.7 19.6 271 21-397 18-318 (353)
62 TIGR00456 argS arginyl-tRNA sy 100.0 9.1E-31 2E-35 305.2 33.5 345 21-499 111-534 (566)
63 PRK00750 lysK lysyl-tRNA synth 100.0 1.3E-31 2.8E-36 306.5 13.6 268 22-395 23-321 (510)
64 TIGR02222 chap_CsaA export-rel 99.9 5.9E-28 1.3E-32 218.2 10.3 103 646-749 3-107 (107)
65 cd02798 tRNA_bind_CsaA tRNA-bi 99.9 1.8E-27 3.8E-32 215.7 10.3 102 646-748 5-107 (107)
66 PRK10089 tRNA-binding protein; 99.9 3.4E-27 7.3E-32 215.5 10.3 103 646-749 8-112 (112)
67 TIGR00467 lysS_arch lysyl-tRNA 99.9 6.1E-27 1.3E-31 265.8 14.0 266 22-398 18-317 (515)
68 PRK12451 arginyl-tRNA syntheta 99.9 7.2E-24 1.6E-28 246.4 35.3 336 21-490 112-525 (562)
69 cd02799 tRNA_bind_EMAP-II_like 99.9 1.8E-25 3.9E-30 202.8 13.1 105 645-749 1-105 (105)
70 cd00671 ArgRS_core catalytic c 99.9 2.8E-24 6.1E-29 220.6 19.0 123 24-150 2-124 (212)
71 COG0018 ArgS Arginyl-tRNA synt 99.9 7.1E-23 1.5E-27 234.9 30.9 340 22-490 117-538 (577)
72 TIGR00399 metG_C_term methiony 99.9 2.9E-24 6.3E-29 202.6 12.9 102 646-749 36-137 (137)
73 PF01588 tRNA_bind: Putative t 99.9 3E-24 6.6E-29 191.0 11.5 95 652-747 1-95 (95)
74 cd02800 tRNA_bind_EcMetRS_like 99.9 2.7E-24 5.9E-29 195.2 11.4 101 646-749 5-105 (105)
75 COG0073 ARC1 EMAP domain [Gene 99.9 5.1E-24 1.1E-28 197.9 10.8 103 646-748 15-123 (123)
76 PLN02286 arginine-tRNA ligase 99.9 1.6E-21 3.4E-26 227.0 33.4 341 20-490 115-540 (576)
77 cd02153 tRNA_bindingDomain The 99.9 3.4E-22 7.3E-27 179.8 11.5 97 652-748 1-99 (99)
78 PF01921 tRNA-synt_1f: tRNA sy 99.8 1.5E-20 3.3E-25 201.4 -0.9 262 20-399 21-327 (360)
79 cd07957 Anticodon_Ia_Met Antic 99.8 2.8E-18 6E-23 162.0 13.4 128 402-535 1-129 (129)
80 COG1384 LysS Lysyl-tRNA synthe 99.8 8.7E-18 1.9E-22 184.4 15.1 89 22-112 19-126 (521)
81 cd00802 class_I_aaRS_core cata 99.8 5.1E-18 1.1E-22 163.5 11.8 77 26-103 1-77 (143)
82 cd02796 tRNA_bind_bactPheRS tR 99.7 1.5E-17 3.3E-22 150.6 8.6 91 652-748 1-103 (103)
83 PF00750 tRNA-synt_1d: tRNA sy 99.7 3.8E-16 8.2E-21 172.4 13.8 127 20-147 18-200 (354)
84 cd07959 Anticodon_Ia_Leu_AEc A 99.6 1E-14 2.2E-19 135.3 12.9 115 403-535 2-117 (117)
85 PRK04156 gltX glutamyl-tRNA sy 99.5 3.1E-14 6.6E-19 162.7 13.0 96 25-139 102-197 (567)
86 cd07962 Anticodon_Ia_Val Antic 99.5 2.7E-13 5.9E-18 129.3 16.4 133 393-535 1-135 (135)
87 cd07960 Anticodon_Ia_Ile_BEm A 99.5 4.8E-13 1E-17 134.1 16.5 136 393-537 1-141 (180)
88 cd07958 Anticodon_Ia_Leu_BEm A 99.5 2E-13 4.4E-18 126.4 11.9 110 409-535 8-117 (117)
89 TIGR00472 pheT_bact phenylalan 99.4 4.3E-13 9.4E-18 163.1 9.1 91 652-749 46-149 (798)
90 cd07961 Anticodon_Ia_Ile_ABEc 99.3 2.9E-11 6.2E-16 121.6 16.5 139 393-537 1-142 (183)
91 PF08264 Anticodon_1: Anticodo 99.3 8.6E-12 1.9E-16 121.4 11.4 90 445-535 1-92 (153)
92 PRK00629 pheT phenylalanyl-tRN 99.3 1.9E-12 4.1E-17 157.3 7.4 91 651-749 44-147 (791)
93 cd09287 GluRS_non_core catalyt 99.3 1.1E-10 2.3E-15 120.3 16.5 95 26-139 3-97 (240)
94 cd07375 Anticodon_Ia_like Anti 99.2 2.2E-10 4.8E-15 105.5 12.7 110 408-524 8-117 (117)
95 COG2517 Predicted RNA-binding 99.1 2E-10 4.4E-15 108.8 7.4 75 649-730 119-193 (219)
96 KOG4426 Arginyl-tRNA synthetas 99.1 1.6E-07 3.6E-12 100.5 29.2 346 12-490 178-613 (656)
97 TIGR00463 gltX_arch glutamyl-t 99.0 1E-08 2.2E-13 117.7 19.3 95 24-139 93-187 (560)
98 PLN03233 putative glutamate-tR 99.0 3.8E-08 8.2E-13 111.8 20.6 94 25-139 12-105 (523)
99 TIGR00464 gltX_bact glutamyl-t 99.0 3.9E-08 8.5E-13 112.3 20.5 90 29-139 6-96 (470)
100 PRK12558 glutamyl-tRNA synthet 98.9 1.3E-08 2.7E-13 114.3 15.8 90 29-139 7-96 (445)
101 PRK05347 glutaminyl-tRNA synth 98.9 7.6E-08 1.6E-12 109.7 19.3 94 25-139 30-124 (554)
102 PRK01406 gltX glutamyl-tRNA sy 98.8 9.1E-09 2E-13 117.5 10.4 93 26-139 6-106 (476)
103 PRK14895 gltX glutamyl-tRNA sy 98.8 1.1E-07 2.3E-12 108.1 18.5 85 312-401 202-288 (513)
104 PLN02907 glutamate-tRNA ligase 98.8 1.9E-07 4E-12 111.4 21.0 95 24-139 213-307 (722)
105 TIGR00440 glnS glutaminyl-tRNA 98.8 7.2E-08 1.6E-12 109.7 15.8 92 27-139 3-95 (522)
106 PRK14703 glutaminyl-tRNA synth 98.8 1.1E-07 2.4E-12 112.9 17.7 94 25-139 32-126 (771)
107 PTZ00437 glutaminyl-tRNA synth 98.8 9.2E-08 2E-12 108.9 15.8 94 25-139 52-145 (574)
108 PTZ00402 glutamyl-tRNA synthet 98.8 5E-07 1.1E-11 103.9 21.8 93 25-138 53-146 (601)
109 cd00418 GlxRS_core catalytic c 98.8 1.1E-07 2.3E-12 97.8 14.7 86 29-135 6-92 (230)
110 PLN02859 glutamine-tRNA ligase 98.8 6.5E-08 1.4E-12 113.7 14.5 94 25-139 265-358 (788)
111 PRK12410 glutamylglutaminyl-tR 98.8 1.7E-08 3.8E-13 112.7 9.2 89 30-139 5-93 (433)
112 cd00807 GlnRS_core catalytic c 98.7 3.4E-07 7.5E-12 94.2 17.2 93 26-139 3-95 (238)
113 TIGR02306 RNA_lig_DRB0094 RNA 98.7 1.6E-08 3.5E-13 109.4 6.2 66 652-727 3-96 (341)
114 cd00808 GluRS_core catalytic c 98.7 3.3E-07 7.1E-12 95.0 15.2 70 311-385 123-193 (239)
115 COG0008 GlnS Glutamyl- and glu 98.6 4.7E-07 1E-11 102.4 16.0 94 25-139 10-104 (472)
116 PLN02627 glutamyl-tRNA synthet 98.6 9.1E-07 2E-11 100.8 16.3 93 26-139 47-148 (535)
117 KOG1195 Arginyl-tRNA synthetas 98.6 1.3E-05 2.8E-10 88.4 23.1 153 326-489 344-528 (567)
118 PF00749 tRNA-synt_1c: tRNA sy 98.5 9.4E-07 2E-11 96.1 13.1 89 30-139 7-96 (314)
119 cd07956 Anticodon_Ia_Arg Antic 97.9 0.00021 4.5E-09 69.9 14.5 114 371-489 2-117 (156)
120 TIGR03838 queuosine_YadB gluta 97.7 9E-05 1.9E-09 78.5 7.4 89 30-139 6-95 (272)
121 KOG1149 Glutamyl-tRNA syntheta 97.7 0.023 4.9E-07 62.3 25.1 72 334-406 262-335 (524)
122 PRK05710 glutamyl-Q tRNA(Asp) 97.5 0.00014 3.1E-09 77.9 6.1 94 25-139 6-100 (299)
123 PRK12556 tryptophanyl-tRNA syn 97.5 0.0011 2.5E-08 72.5 12.9 78 32-121 11-91 (332)
124 KOG1147 Glutamyl-tRNA syntheta 97.1 0.0021 4.5E-08 71.7 9.1 96 25-141 201-296 (712)
125 COG0162 TyrS Tyrosyl-tRNA synt 96.3 0.011 2.4E-07 66.0 8.1 73 21-102 32-107 (401)
126 PF05746 DALR_1: DALR anticodo 95.4 0.11 2.4E-06 47.9 9.5 79 411-490 2-80 (119)
127 PRK12285 tryptophanyl-tRNA syn 94.2 0.25 5.5E-06 55.0 10.1 76 21-110 64-139 (368)
128 cd00806 TrpRS_core catalytic c 93.7 0.23 5.1E-06 53.3 8.3 83 26-121 2-87 (280)
129 KOG1148 Glutaminyl-tRNA synthe 93.3 0.25 5.4E-06 56.3 8.0 94 25-139 249-342 (764)
130 PLN02486 aminoacyl-tRNA ligase 93.2 0.58 1.3E-05 52.3 10.6 87 21-120 71-159 (383)
131 COG0180 TrpS Tryptophanyl-tRNA 93.0 0.45 9.7E-06 51.4 9.1 91 22-125 4-98 (314)
132 PF09190 DALR_2: DALR domain; 92.1 0.27 5.8E-06 40.1 4.7 27 458-484 1-28 (63)
133 TIGR00233 trpS tryptophanyl-tR 91.8 0.55 1.2E-05 51.6 8.2 86 23-121 2-90 (328)
134 PRK13354 tyrosyl-tRNA syntheta 91.6 0.19 4.2E-06 56.8 4.5 77 21-104 31-110 (410)
135 smart00836 DALR_1 DALR anticod 91.1 2.7 5.8E-05 38.8 11.0 77 411-490 2-83 (122)
136 cd00805 TyrRS_core catalytic c 90.7 0.26 5.7E-06 52.6 4.3 74 28-108 5-81 (269)
137 cd00395 Tyr_Trp_RS_core cataly 90.5 0.28 6.2E-06 52.4 4.3 69 309-383 156-225 (273)
138 COG1656 Uncharacterized conser 89.8 0.59 1.3E-05 45.2 5.3 86 52-154 18-107 (165)
139 PRK08560 tyrosyl-tRNA syntheta 89.8 0.86 1.9E-05 50.2 7.4 76 21-110 28-103 (329)
140 TIGR00233 trpS tryptophanyl-tR 89.7 0.92 2E-05 49.9 7.6 67 309-383 142-217 (328)
141 PF00579 tRNA-synt_1b: tRNA sy 89.2 0.31 6.7E-06 52.8 3.4 42 22-69 4-45 (292)
142 PHA02142 putative RNA ligase 88.6 1.3 2.8E-05 48.8 7.6 77 649-725 7-101 (366)
143 PRK05912 tyrosyl-tRNA syntheta 88.5 0.44 9.5E-06 54.0 4.1 68 309-383 191-259 (408)
144 PTZ00385 lysyl-tRNA synthetase 88.1 0.07 1.5E-06 63.1 -2.7 50 660-712 609-659 (659)
145 PRK13354 tyrosyl-tRNA syntheta 88.1 0.93 2E-05 51.4 6.3 68 309-383 189-257 (410)
146 PRK12284 tryptophanyl-tRNA syn 88.1 1.9 4.2E-05 48.6 8.7 93 26-132 5-100 (431)
147 cd00395 Tyr_Trp_RS_core cataly 87.8 1 2.2E-05 48.3 6.1 71 32-108 7-80 (273)
148 smart00840 DALR_2 This DALR do 87.2 1.1 2.4E-05 35.2 4.5 30 459-488 2-32 (56)
149 PRK14714 DNA polymerase II lar 86.3 1.8 3.8E-05 54.3 7.6 76 122-203 642-720 (1337)
150 PLN02886 aminoacyl-tRNA ligase 86.2 3.3 7.2E-05 46.4 9.1 83 26-123 49-134 (389)
151 PF01927 Mut7-C: Mut7-C RNAse 85.6 0.57 1.2E-05 45.3 2.5 116 52-187 12-136 (147)
152 cd00805 TyrRS_core catalytic c 85.1 1 2.2E-05 48.1 4.5 67 309-383 154-221 (269)
153 PRK05912 tyrosyl-tRNA syntheta 84.1 1.9 4.1E-05 48.9 6.2 80 22-109 32-114 (408)
154 PRK12284 tryptophanyl-tRNA syn 82.5 0.56 1.2E-05 52.9 1.1 68 309-383 151-226 (431)
155 PTZ00126 tyrosyl-tRNA syntheta 82.4 1.1 2.4E-05 50.3 3.4 78 22-110 65-142 (383)
156 PTZ00126 tyrosyl-tRNA syntheta 82.3 3.4 7.3E-05 46.4 7.2 66 309-383 213-282 (383)
157 PRK12282 tryptophanyl-tRNA syn 82.2 0.99 2.2E-05 49.7 2.9 69 28-110 7-75 (333)
158 cd00806 TrpRS_core catalytic c 82.0 0.99 2.2E-05 48.5 2.8 57 309-366 140-205 (280)
159 PRK08560 tyrosyl-tRNA syntheta 81.6 1.3 2.8E-05 48.8 3.5 54 309-366 171-228 (329)
160 PRK12285 tryptophanyl-tRNA syn 80.3 0.9 1.9E-05 50.7 1.8 66 309-383 206-276 (368)
161 PRK00927 tryptophanyl-tRNA syn 80.2 5.2 0.00011 44.2 7.7 78 28-120 6-86 (333)
162 PRK00927 tryptophanyl-tRNA syn 80.1 1.1 2.4E-05 49.4 2.4 68 309-383 141-220 (333)
163 PF00579 tRNA-synt_1b: tRNA sy 80.0 2.8 6.1E-05 45.3 5.5 57 309-367 152-213 (292)
164 PRK04023 DNA polymerase II lar 77.2 4.1 9E-05 49.9 6.0 78 134-225 617-694 (1121)
165 COG0180 TrpS Tryptophanyl-tRNA 76.3 1.2 2.5E-05 48.3 1.1 56 309-366 148-212 (314)
166 PRK12283 tryptophanyl-tRNA syn 76.1 1.1 2.4E-05 50.0 0.9 82 26-122 5-90 (398)
167 TIGR00234 tyrS tyrosyl-tRNA sy 76.0 2.4 5.2E-05 47.6 3.5 40 23-68 30-70 (377)
168 PRK01233 glyS glycyl-tRNA synt 74.9 37 0.00081 41.1 13.3 82 405-489 566-647 (682)
169 PRK12282 tryptophanyl-tRNA syn 74.1 12 0.00025 41.4 8.2 58 309-366 145-209 (333)
170 TIGR00234 tyrS tyrosyl-tRNA sy 71.2 7.8 0.00017 43.5 6.1 18 349-366 217-234 (377)
171 COG0751 GlyS Glycyl-tRNA synth 66.8 64 0.0014 38.7 12.5 116 371-489 541-656 (691)
172 PRK12283 tryptophanyl-tRNA syn 66.5 18 0.00039 40.7 7.6 42 336-383 245-288 (398)
173 TIGR00211 glyS glycyl-tRNA syn 66.4 74 0.0016 38.7 13.2 117 371-490 542-658 (691)
174 PLN02486 aminoacyl-tRNA ligase 65.1 3.7 8E-05 46.0 2.0 65 309-383 222-290 (383)
175 PTZ00348 tyrosyl-tRNA syntheta 61.5 28 0.00062 42.0 8.5 82 23-116 32-116 (682)
176 cd07963 Anticodon_Ia_Cys Antic 59.5 13 0.00029 36.0 4.5 34 454-487 33-67 (156)
177 PRK14908 glycyl-tRNA synthetas 58.2 1.1E+02 0.0023 38.8 12.7 111 371-489 857-967 (1000)
178 PF13248 zf-ribbon_3: zinc-rib 56.7 7.1 0.00015 25.7 1.4 8 176-183 17-24 (26)
179 PRK06266 transcription initiat 56.1 8.6 0.00019 38.4 2.6 30 175-204 117-148 (178)
180 PF12773 DZR: Double zinc ribb 54.9 12 0.00025 28.7 2.6 29 174-202 11-39 (50)
181 PRK00398 rpoP DNA-directed RNA 54.0 7.9 0.00017 29.3 1.5 29 178-206 6-35 (46)
182 PF09862 DUF2089: Protein of u 51.9 17 0.00037 33.3 3.5 47 178-227 1-48 (113)
183 PTZ00348 tyrosyl-tRNA syntheta 51.9 11 0.00024 45.4 3.0 55 309-366 178-236 (682)
184 cd07955 Anticodon_Ia_Cys_like 51.7 49 0.0011 28.4 6.2 28 455-482 29-57 (81)
185 PF13240 zinc_ribbon_2: zinc-r 49.0 11 0.00025 24.1 1.4 8 176-183 14-21 (23)
186 PRK14559 putative protein seri 48.6 13 0.00028 44.7 2.8 23 177-202 29-51 (645)
187 smart00659 RPOLCX RNA polymera 48.2 14 0.00031 27.8 2.0 31 178-208 5-35 (44)
188 COG1996 RPC10 DNA-directed RNA 44.5 15 0.00033 28.3 1.7 32 177-208 8-40 (49)
189 PF03833 PolC_DP2: DNA polymer 42.5 8.3 0.00018 46.6 0.0 54 140-204 651-704 (900)
190 PRK14559 putative protein seri 41.8 16 0.00035 43.8 2.3 36 145-186 16-52 (645)
191 PRK14529 adenylate kinase; Pro 41.0 1.1E+02 0.0023 31.8 7.9 135 67-227 40-180 (223)
192 KOG2145 Cytoplasmic tryptophan 40.5 32 0.0007 36.5 3.9 45 21-71 83-128 (397)
193 PRK14714 DNA polymerase II lar 39.7 19 0.00041 45.7 2.4 31 648-678 975-1005(1337)
194 COG2185 Sbm Methylmalonyl-CoA 39.2 77 0.0017 30.4 5.9 70 39-136 23-92 (143)
195 TIGR00640 acid_CoA_mut_C methy 37.2 1.2E+02 0.0027 28.5 7.1 66 47-136 17-82 (132)
196 PF03698 UPF0180: Uncharacteri 35.0 32 0.0007 29.5 2.4 48 51-98 12-79 (80)
197 KOG2713 Mitochondrial tryptoph 34.7 1.7E+02 0.0036 31.4 7.9 84 28-124 18-106 (347)
198 PF03604 DNA_RNApol_7kD: DNA d 34.0 33 0.00072 24.0 1.9 28 178-205 3-30 (32)
199 PF05191 ADK_lid: Adenylate ki 33.3 19 0.0004 25.9 0.6 29 178-206 4-35 (36)
200 PRK05710 glutamyl-Q tRNA(Asp) 32.8 56 0.0012 35.4 4.5 68 309-385 194-263 (299)
201 cd00350 rubredoxin_like Rubred 31.3 29 0.00064 24.2 1.3 25 177-202 3-27 (33)
202 cd06259 YdcF-like YdcF-like. Y 31.1 4.5E+02 0.0098 24.7 11.4 104 24-134 3-120 (150)
203 KOG2623 Tyrosyl-tRNA synthetas 31.0 45 0.00098 37.0 3.3 48 24-76 64-113 (467)
204 PRK05580 primosome assembly pr 30.5 3.1E+02 0.0067 33.5 10.8 135 121-281 353-507 (679)
205 PF08271 TF_Zn_Ribbon: TFIIB z 30.0 36 0.00077 25.3 1.7 10 177-186 21-30 (43)
206 PRK03094 hypothetical protein; 29.7 45 0.00097 28.6 2.4 46 52-97 13-78 (80)
207 TIGR00595 priA primosomal prot 28.1 88 0.0019 36.7 5.4 51 139-202 208-263 (505)
208 PF07754 DUF1610: Domain of un 27.1 36 0.00078 22.2 1.1 20 180-199 3-23 (24)
209 COG1198 PriA Primosomal protei 26.7 54 0.0012 40.0 3.4 50 139-201 430-484 (730)
210 COG5270 PUA domain (predicted 26.7 40 0.00086 33.4 1.8 23 133-155 3-25 (202)
211 PRK12496 hypothetical protein; 26.4 33 0.00071 33.8 1.2 32 177-209 129-160 (164)
212 PRK00564 hypA hydrogenase nick 26.0 57 0.0012 30.1 2.7 24 178-201 74-97 (117)
213 PF03033 Glyco_transf_28: Glyc 25.8 66 0.0014 29.8 3.2 28 39-70 9-36 (139)
214 PF06940 DUF1287: Domain of un 25.6 58 0.0012 31.7 2.6 30 29-62 21-50 (164)
215 PRK03824 hypA hydrogenase nick 24.9 2.2E+02 0.0048 27.0 6.5 37 117-154 37-80 (135)
216 PLN02886 aminoacyl-tRNA ligase 24.9 38 0.00083 38.1 1.5 31 336-366 229-267 (389)
217 smart00661 RPOL9 RNA polymeras 24.7 41 0.00089 25.8 1.3 24 177-200 2-28 (52)
218 TIGR01206 lysW lysine biosynth 24.2 34 0.00073 27.0 0.7 20 194-215 24-43 (54)
219 TIGR00373 conserved hypothetic 24.0 38 0.00083 33.0 1.2 44 175-225 109-154 (158)
220 PRK05978 hypothetical protein; 23.8 53 0.0011 31.7 2.1 9 160-170 33-41 (148)
221 KOG4718 Non-SMC (structural ma 23.8 23 0.0005 35.7 -0.4 79 119-199 134-223 (235)
222 PRK02261 methylaspartate mutas 23.7 2.6E+02 0.0056 26.5 6.8 80 22-136 4-83 (137)
223 TIGR03838 queuosine_YadB gluta 23.5 50 0.0011 35.4 2.0 49 309-361 187-237 (272)
224 cd02071 MM_CoA_mut_B12_BD meth 23.5 3.2E+02 0.007 25.0 7.3 65 47-136 14-79 (122)
225 cd00729 rubredoxin_SM Rubredox 23.4 46 0.001 23.5 1.2 24 178-202 5-28 (34)
226 cd01675 RNR_III Class III ribo 23.2 82 0.0018 37.4 4.0 7 194-200 534-540 (555)
227 COG1439 Predicted nucleic acid 23.1 51 0.0011 32.6 1.8 29 175-206 139-167 (177)
228 PF14671 DSPn: Dual specificit 22.2 70 0.0015 30.6 2.5 36 34-72 41-79 (141)
229 COG1933 Archaeal DNA polymeras 22.0 56 0.0012 33.8 1.9 79 122-203 116-194 (253)
230 PRK00420 hypothetical protein; 20.2 59 0.0013 29.8 1.5 10 194-203 42-51 (112)
No 1
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=4.4e-175 Score=1545.17 Aligned_cols=791 Identities=83% Similarity=1.357 Sum_probs=694.2
Q ss_pred CCCCCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHH
Q 003601 15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKY 94 (808)
Q Consensus 15 ~~~~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~ 94 (808)
.+|..|+++||||+|+|||||.|||||+++++|++|+++||+||+|++|+|++|||+||+||+.+|+++|++|+++|++|
T Consensus 10 ~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~ 89 (801)
T PLN02610 10 KLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKY 89 (801)
T ss_pred cCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHH
Confidence 56888999999999999999999999999878999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcC
Q 003601 95 HVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR 174 (808)
Q Consensus 95 ~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~ 174 (808)
++.|+++|++|||++|+|+||++++|.+.||++|.+|+++|+||++++++|||++|++||+|++|+|+||..+|++++++
T Consensus 90 ~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~ 169 (801)
T PLN02610 90 HAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSAR 169 (801)
T ss_pred HHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccce
Q 003601 175 GDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRC 254 (808)
Q Consensus 175 g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ 254 (808)
||+||.||+.+++.+|++|+|++||+++++++++||||+|++|+++|.+|+++++..+.|+++.++.+.+||++||+|||
T Consensus 170 Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~ 249 (801)
T PLN02610 170 GDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRC 249 (801)
T ss_pred cchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998766678999999889999999999999
Q ss_pred eccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCC
Q 003601 255 ITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (808)
Q Consensus 255 ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~ 334 (808)
|||++.||||||.+++++|||||||||++||+|++.+|..+|++||++|.+++++||+||||++||+++|||||+++|.+
T Consensus 250 IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~ 329 (801)
T PLN02610 250 ITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 329 (801)
T ss_pred eeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCC
Confidence 99999999999998889999999999999999998788888999998666889999999999999999999999999998
Q ss_pred cccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Q 003601 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (808)
Q Consensus 335 ~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (808)
|++|+++++||||+++|+|||||+||+|+|.++++..||+|++||||++.+|+++|.+|||++|.+++|++|+|+|||++
T Consensus 330 ~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv 409 (801)
T PLN02610 330 WTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFI 409 (801)
T ss_pred cCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998349999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003601 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (808)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (808)
+|+++|+.+...++++|.+|.....+..+.|+++++.+..+.+++.++|++|+|++|++.|+++++.+|+||+..+||++
T Consensus 410 ~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L 489 (801)
T PLN02610 410 NRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 489 (801)
T ss_pred HHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 99999998200016899988643222345688999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccccccccccCccccccCCCcCCCCCCccCCCCCC
Q 003601 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (808)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (808)
.+++.+++.+++++++++++.+++||+||||++|++||++||++... .+|.+....+......|..++.|++++++++|
T Consensus 490 ~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~l 568 (801)
T PLN02610 490 YKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLSDEKGEVARAKRPWELVPAGHKIGTPEPL 568 (801)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCccc-ccchhccccccccccccccCCCCCCCCCCCCC
Confidence 88777778899999999999999999999999999999999986432 12321000010001135556789999999999
Q ss_pred ccCCChhHHHHHHhhhcCChhhHHHHHHHHH-HHHHHHhhhcccccCCCCccccccccccccCCCCCCCCccCceeeeEE
Q 003601 575 FKELKDDEVEFFRSKFAGSQADRIIRAEAEA-AKTAEQLKKTKISVDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIR 653 (808)
Q Consensus 575 F~ri~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 653 (808)
|+||++++++++.+++.+.+.++..++++.+ ++++++.++ ..+.+.++++.+++++.+..+.++....+||++||||
T Consensus 569 F~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlr 646 (801)
T PLN02610 569 FKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKK--KALSDGGKKKQGKKAGGGGKSKAAAEREIDVSRLDIR 646 (801)
T ss_pred CCCCCHHHHHHHHHHhccchhhhhhhhhccccccccccccc--ccccccccccccccccccccccccccccccceeeeeE
Confidence 9999999998887777654322111011000 000000000 0000000000000000000111112233599999999
Q ss_pred EEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEeeeecCCCCeE
Q 003601 654 VGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKV 733 (808)
Q Consensus 654 vg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~~~~~~~~~~ 733 (808)
||+|++|++||+|||||+++||+|++++||||||++++|++|+|+|++||+++||||++|||++|+|||||+++++++++
T Consensus 647 Vg~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~e~l~G~~Vvv~~nlkp~klrGv~S~GMll~a~~~~~~~~ 726 (801)
T PLN02610 647 VGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNSDHTKV 726 (801)
T ss_pred EEEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCChHHhCCCEEEEEEEecccccCCcccceeEEecccCCCCce
Confidence 99999999999999999999999987899999999999999999999999999999999999999999999987666679
Q ss_pred EEEcCCCCCCCCceeecCCCCCCCCCCCCcchhhHHHhccCceecCCeEEEecCeeeEecCCceeecccCCcccC
Q 003601 734 ELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 808 (808)
Q Consensus 734 ~~l~~~~~~~~G~~v~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 808 (808)
+|+.||.++++|++|.|+|++++|++++++|||+|++|+++|+|+++|+|+|+|.+|+|++|+|++++|+||+|+
T Consensus 727 ~ll~~~~~~~~G~~v~~~~~~~~p~~~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 801 (801)
T PLN02610 727 ELVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYKDVPFTTSAGVCKVASIANGSIR 801 (801)
T ss_pred EEEeCCCCCCCCCEEEeCCCCCCcccccCcccchHHHhCCCCEECCceEEEECCEEEEecCCCeEcccCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-139 Score=1240.99 Aligned_cols=663 Identities=34% Similarity=0.609 Sum_probs=595.5
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (808)
+++|||+|||||||.|||||+++ ++.+|+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|++|++.|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~-~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHH-HHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999996 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhcc
Q 003601 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (808)
Q Consensus 102 ~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~c 181 (808)
|++|||++|.|+||++++|.+.|+++|++|+++|+||++++.+|||+.|++||+|++|+|+||. |++.+++|++|+.|
T Consensus 81 ~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~--C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCC--CCCcccCCchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCC
Q 003601 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (808)
Q Consensus 182 G~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~W 261 (808)
|+.+++.+|++|+|.+||+++++++++||||+|++|+++|.+|+++++ .|++++++++.+||++||+||||||++.|
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~d~~ISR~~~W 235 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG---ELQPNVANKMKEWLEEGLQDWDISRDAPY 235 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhCCCcccceeeeCCc
Confidence 999999999999999999999999999999999999999999997543 48999999999999999999999999999
Q ss_pred -CcccCCccCCCceEEEEecccchhhhhccCCch-----hHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCc
Q 003601 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (808)
Q Consensus 262 -GipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~-----~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~ 335 (808)
|||+|++ +++++||||||+++|++.+.+|.+ .|+.||+.+.+++++||+||||++||+++|||||+++|+
T Consensus 236 ~GipvP~~--~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-- 311 (673)
T PRK00133 236 FGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-- 311 (673)
T ss_pred cceECCCC--CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC--
Confidence 9999965 899999999999999998866643 589999534467889999999999999999999999886
Q ss_pred ccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCC-CCcccCHHHHHHHHHHHHHHHHHHHH
Q 003601 336 TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKSNNELLNNLGNFI 414 (808)
Q Consensus 336 ~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~-~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (808)
++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++||||++.++.+ +|.+|+++.+..++|++|+++++|++
T Consensus 312 ~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie-~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 312 RLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred CCCCEEeeeccEEecCCcccccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999 699999999999999999 99999999999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003601 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (808)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (808)
+|+.+++.+ ++++.+|. .+.|+++++.++.+.+++.++|++|+|+.|++.+++|++.+|+|++..+||.+
T Consensus 391 ~R~~~~~~k----~~~~~~~~------~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~ 460 (673)
T PRK00133 391 SRTAGFINK----RFDGKLPD------ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKL 460 (673)
T ss_pred HHHHHHHHH----hcCCCCCC------CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 999999887 67766552 12467999999999999999999999999999999999999999999999998
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccccccccccCccccccCCCcCCCCCCccCCCCCC
Q 003601 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (808)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (808)
.+++.+++.+++++++++++.+++||+||||++|++||++||++. ..|.+ ++.+..|++++++++|
T Consensus 461 ~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~---~~~~~-----------~~~~~~g~~~~~~~~l 526 (673)
T PRK00133 461 AKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEE---LTWDD-----------AQQPLAGHPINKFKIL 526 (673)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCc---cChhh-----------hcCCCCCCCcCCCCcC
Confidence 877777788999999999999999999999999999999999852 12322 1224479999999999
Q ss_pred ccCCChhHHHHHHhhhcCChhhHHHHHHHHHHHHHHHhhhcccccCCCCccccccccccccCCCCCCCCcc-CceeeeEE
Q 003601 575 FKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISVDGGGKKQKSAKSTAGAKSKTTAEPEI-SIARLDIR 653 (808)
Q Consensus 575 F~ri~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r 653 (808)
|+|+++++++++.+++++.++.+ ++ + +++.+ + ....+.+++..+ +|.++|||
T Consensus 527 f~~~~~~~~~~~~~~~~~~~~~~--------~~-------------~--~~~~~-~---~~~~~~~~~~~~~~f~~~di~ 579 (673)
T PRK00133 527 FTRIEDKQIEALIEASKEAAAAK--------AA-------------A--AAAAA-P---LAEEPIAETISFDDFAKVDLR 579 (673)
T ss_pred CcCCCHHHHHHHHHHhhcchhhc--------cc-------------c--hhccc-c---cccCccccccCHHHHhhhhcc
Confidence 99999998887766554321100 00 0 00000 0 001122233444 79999999
Q ss_pred EEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeeccccee-cccccceEEeeeecCCCCe
Q 003601 654 VGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAM-RGIKSHAMVLCASTSDNTK 732 (808)
Q Consensus 654 vg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~-~g~~S~gmll~~~~~~~~~ 732 (808)
||+|++|++||++++|++++||+|++ +||||||++++|.+++|+|++|++++||||++| +|+ |+|||||++++++ +
T Consensus 580 vg~I~~~~~~p~~~~l~~~~vd~G~~-~~~iv~g~~~~~~~~~l~G~~v~~~~nlkp~~~~~Gv-S~gMl~~~~~~~~-~ 656 (673)
T PRK00133 580 VAKIVEAEKVEGADKLLKLTLDLGEE-TRQVFSGIKSAYDPEELVGKLVVMVANLAPRKMKFGV-SEGMVLAAGPGGG-D 656 (673)
T ss_pred eeeeEeeecCCCCCccceeeEecCCc-eeEEEcCccccCCHHHHhcCeeEEEEeeccccccCCc-cceeEEEeecCCC-c
Confidence 99999999999999999999999985 899999999999999999999999999999999 999 9999999986543 6
Q ss_pred EEEEcCCCCCCCCceee
Q 003601 733 VELVEPPKSAKIGERVA 749 (808)
Q Consensus 733 ~~~l~~~~~~~~G~~v~ 749 (808)
+.++.++.++++|++|.
T Consensus 657 i~~l~~~~~~~~G~~~~ 673 (673)
T PRK00133 657 LFLLEPDEGAKPGMRVK 673 (673)
T ss_pred EEEecCCCCCCCCCcCC
Confidence 88998888899999873
No 3
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-135 Score=1142.55 Aligned_cols=544 Identities=40% Similarity=0.709 Sum_probs=510.7
Q ss_pred CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (808)
Q Consensus 20 ~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (808)
.+++||||||+|||||+|||||++ ++|+|||++||+|++|++|+|+||||+||+||+.+|+++|++|+++||++++.|+
T Consensus 3 ~~~~~~VTtalpY~Ng~~HlGH~~-~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~ 81 (558)
T COG0143 3 MMKKILVTTALPYPNGPPHLGHLY-TYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFK 81 (558)
T ss_pred CCCcEEEecCCCCCCCCcchhhHH-HHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhh
Q 003601 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (808)
Q Consensus 100 ~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce 179 (808)
++|+.|||+||.|+||++++|.+.||++|++|+++|+||.+++++|||++|++||+|++|+|+||. ||++.++||+||
T Consensus 82 ~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~--cg~~~arGD~Ce 159 (558)
T COG0143 82 ELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPK--CGGEDARGDQCE 159 (558)
T ss_pred HHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCC--cCccccCcchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceecc-c
Q 003601 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-D 258 (808)
Q Consensus 180 ~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR-~ 258 (808)
+||+.++|.+|++|+|++||.++++|+++||||+|++|+++|++|+++++. ..|+.++++++.+||++||+|||||| +
T Consensus 160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~-~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558)
T COG0143 160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPD-FIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558)
T ss_pred hccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCcc-ccCChHHHHHHHHHHHccCcccceecCC
Confidence 999999999999999999999999999999999999999999999999874 35999999999999999999999999 8
Q ss_pred cCCCcccCCccCCCceEEEEecccchhhhhccCCc-----hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCC
Q 003601 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (808)
Q Consensus 259 ~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~-----~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~ 333 (808)
++||||||+. ++||+||||||++||||++..+. .+|++||+++ ++++||||||||++||++|||||||++|+
T Consensus 239 ~~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfIGKDii~FHav~wPamL~~~~~ 315 (558)
T COG0143 239 LDWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFIGKDIIRFHAVYWPAMLMAAGL 315 (558)
T ss_pred CCCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEeccccCcchhhHHHHHHHhCCC
Confidence 9999999954 89999999999999999987764 4799999865 89999999999999999999999999998
Q ss_pred CcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 003601 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (808)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl 413 (808)
+ +|+++++||||+++|+|||||+||+|++.++++ .|++|+|||||++..|+++|++||+++|++++|++|+|++||+
T Consensus 316 ~--lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~-~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl 392 (558)
T COG0143 316 P--LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE-QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNL 392 (558)
T ss_pred C--CCCEEEeeeeEEECCccccccCCcEEeHHHHHH-HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999999999 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchh
Q 003601 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (808)
Q Consensus 414 ~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (808)
++|+++|+.| +++|.+|....... +.|+.+++.+..+...+.++|+.++|++|++.+++|++.+|+|+++.+||+
T Consensus 393 ~~R~~~fi~k----~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~ 467 (558)
T COG0143 393 ANRTLGFINK----YFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWK 467 (558)
T ss_pred HHHHHHHHHh----ccCCcCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 9999999999 89999987542223 678899999999999999999999999999999999999999999999999
Q ss_pred hccCC-hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccc-cccccccCccccccCCCcCCCCCCccCCC
Q 003601 494 LYKED-QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH-ISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (808)
Q Consensus 494 l~k~~-~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~i~~~ 571 (808)
+.|++ ++++.+++++++++++.+++||+||||.+|++||++||++...+ ..|.. .+..+..|+.++++
T Consensus 468 l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~----------~~~~l~~~~~~~~~ 537 (558)
T COG0143 468 LAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLG----------ARQPLLPGHKLGPP 537 (558)
T ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhhh----------hccccCCCcccCCc
Confidence 99875 68899999999999999999999999999999999999874332 11211 12346679999999
Q ss_pred CCCccCCChhHHHHHHh
Q 003601 572 NPLFKELKDDEVEFFRS 588 (808)
Q Consensus 572 ~~LF~ri~~~~i~~~~~ 588 (808)
++||+||+.++++++.+
T Consensus 538 ~~lF~ri~~~~~~~~~~ 554 (558)
T COG0143 538 EPLFPRIEEEAIEELIE 554 (558)
T ss_pred ccCccccCHHHHHHHHH
Confidence 99999999999887654
No 4
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-131 Score=1169.65 Aligned_cols=635 Identities=29% Similarity=0.534 Sum_probs=558.8
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
+++||||||+|||||.|||||+++ +|.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|+++|++|++.|++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~-~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYT-TIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchH-HHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhc
Q 003601 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (808)
Q Consensus 101 ~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (808)
+|++|||++|.|+||++++|.+.|+++|++|+++|+||++++++|||+.|++||+|+++.
T Consensus 82 ~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-------------------- 141 (648)
T PRK12267 82 LWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-------------------- 141 (648)
T ss_pred HHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999997642
Q ss_pred cCCCCCccccCC-CccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHH-HHHHccCccceeccc
Q 003601 181 CGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH-AWLKEGLKVRCITRD 258 (808)
Q Consensus 181 cG~~l~~~el~~-p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~gl~d~~ISR~ 258 (808)
+ |+|++||+++++++++||||+|++|+++|.+|+++++.+ .|+++.++.+. +||++||+||||||+
T Consensus 142 -----------~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~~l~~~l~D~~ISR~ 209 (648)
T PRK12267 142 -----------DGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDF-IQPESRKNEMINNFIKPGLEDLSISRT 209 (648)
T ss_pred -----------cCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcc-cCCHHHHHHHHHHHhhCCCCCcccCCC
Confidence 2 568889999999999999999999999999999876532 36888888888 999999999999998
Q ss_pred -cCCCcccCCccCCCceEEEEecccchhhhhccCCc----hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCC
Q 003601 259 -LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (808)
Q Consensus 259 -~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~----~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~ 333 (808)
.+||||||++ +++||||||||+++|++++ +|+ ++|++|| |.| +||+||||++||+++||||+++++.
T Consensus 210 ~~~WGipvP~~--~~~v~yVWfDA~~~y~s~~-~~~~~~~~~~~~~w--p~~---~~~~GkDii~fH~i~wpa~l~~~~~ 281 (648)
T PRK12267 210 SFDWGIPVPFD--PKHVVYVWIDALLNYITAL-GYGSDDDELFKKFW--PAD---VHLVGKDILRFHAIYWPIMLMALGL 281 (648)
T ss_pred CCCcceECCCC--CCCEEEEcccchHHHHHHc-CCCCCCchHHHhhc--ccc---eEEEeeeecchhHHHHHHHHHhCCC
Confidence 5899999986 7999999999999999986 674 3689999 456 8999999999999999999999986
Q ss_pred CcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 003601 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (808)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl 413 (808)
++|+++++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++.+++++|++|+++.|.+++|++|+|+|||+
T Consensus 282 --~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~-~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl 358 (648)
T PRK12267 282 --PLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVD-RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNL 358 (648)
T ss_pred --CCCcEEEecceEEECCceecccCCcccCHHHHHH-HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 5899999999999999999999999999999999 6999999999999899999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchh
Q 003601 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (808)
Q Consensus 414 ~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (808)
++|+.+++.+ ++++.+|... ...+.|+++++.++.+.+++.++|++|+|++|++.+++|++.+|+|++..+||.
T Consensus 359 ~~R~~~~~~~----~~~~~~p~~~--~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 359 LNRTVAMINK----YFDGEIPAPG--NVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHHHHHHHH----hcCCcCCCCC--CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999988 6778777422 234568899999999999999999999999999999999999999999999999
Q ss_pred hccC--ChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccccccccccCccccccCCCcCCCCCCccCCC
Q 003601 494 LYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (808)
Q Consensus 494 l~k~--~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~ 571 (808)
+.++ +.+++.+++++++++++.+++||+||||++|++||++||++... ..|.+. ..|..++.|++++++
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~-~~~~~~--------~~~~~~~~g~~~~~~ 503 (648)
T PRK12267 433 LAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEEL-TSWESL--------LEWGGLPAGTKVAKG 503 (648)
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccc-cchhhh--------hhhccccCCCccCCC
Confidence 8765 44678889999999999999999999999999999999985321 233220 113446789999999
Q ss_pred CCCccCCChh-HHHHHHhhhcCChhhHHHHHHHHHHHHHHHhhhcccccCCCCccccccccccccCCCCCCCCcc-Ccee
Q 003601 572 NPLFKELKDD-EVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISVDGGGKKQKSAKSTAGAKSKTTAEPEI-SIAR 649 (808)
Q Consensus 572 ~~LF~ri~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 649 (808)
++||+||+++ .++. .+++++.+ + .+ .++++. . ++.+++..+ ||++
T Consensus 504 ~~lf~k~~~~~~~~~-~~~~~~~~--------~--------~~-------~~~~~~------~---~~~~~~~~~~~f~~ 550 (648)
T PRK12267 504 EPLFPRIDVEEEIAY-IKEQMEGS--------A--------PK-------EPEEKE------K---KPEKPEITIDDFDK 550 (648)
T ss_pred CCCcCCCCcHHHHHH-HHHhhhhh--------h--------cc-------cccccc------c---CcccCccCHhhhhh
Confidence 9999999975 4433 22221110 0 00 000000 0 011122333 8999
Q ss_pred eeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEeeeecCC
Q 003601 650 LDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSD 729 (808)
Q Consensus 650 ~~~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~~~~~~ 729 (808)
+|||||+|++|++||++|+|++++||+|++++||||||++++|.|++|+|++|++++||+|++|||++|+|||||+.+ +
T Consensus 551 ~d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~gMl~s~~~-~ 629 (648)
T PRK12267 551 VELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLKPAKLMGEESQGMILAAED-D 629 (648)
T ss_pred hceeEEEEEeeccCCCCCccceEEEEeCCCceEEEEeCCcccCCHhHhCCCeEEEEEeecccccCCcccceEEEEecc-C
Confidence 999999999999999999999999999976789999999999999999999999999999999999999999999987 3
Q ss_pred CCeEEEEcCCCCCCCCceee
Q 003601 730 NTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 730 ~~~~~~l~~~~~~~~G~~v~ 749 (808)
+ .+.|+.+|.++++|++|.
T Consensus 630 ~-~~~l~~~~~~~~~G~~~~ 648 (648)
T PRK12267 630 G-KLTLLTVDKEVPNGSKVK 648 (648)
T ss_pred C-eEEEEeCCCCCCCcCCCC
Confidence 2 578999999999999873
No 5
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-117 Score=917.77 Aligned_cols=561 Identities=62% Similarity=1.108 Sum_probs=535.5
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHH
Q 003601 13 PPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICD 92 (808)
Q Consensus 13 ~~~~~~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~ 92 (808)
.+++|..+++.++||+++||+|..||+|++.+.+++|||+|||.+.+|++..|+|||||+|++++.+|.++|++|+++|+
T Consensus 5 ~~ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcd 84 (567)
T KOG1247|consen 5 DPILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCD 84 (567)
T ss_pred CCcccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCC
Q 003601 93 KYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYES 172 (808)
Q Consensus 93 ~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~ 172 (808)
+|+..|+..+++++|++|.|.|||.+.+.+.+|.+|.+|+++|+..+.+..+.||..|++|++|++|+|+||. |++++
T Consensus 85 Kyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~--C~yd~ 162 (567)
T KOG1247|consen 85 KYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPF--CGYDD 162 (567)
T ss_pred hcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCC--CCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCcc
Q 003601 173 ARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKV 252 (808)
Q Consensus 173 ~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d 252 (808)
|+||||++||+++++.++++|+|..|...++++.+.|.||.|+++++++.+|++.......|.+|+.+++++||++||.+
T Consensus 163 ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~p 242 (567)
T KOG1247|consen 163 ARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKP 242 (567)
T ss_pred ccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccc
Confidence 99999999999999999999999999999999999999999999999999999987666789999999999999999999
Q ss_pred ceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCC
Q 003601 253 RCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTG 332 (808)
Q Consensus 253 ~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g 332 (808)
+||||++.||+|||.++++++|+||||||+|||+|.+.+|.++|++||.+|.++++++|+|||++.||++++|+++++.+
T Consensus 243 RCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~ 322 (567)
T KOG1247|consen 243 RCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTE 322 (567)
T ss_pred cccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 003601 333 ENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (808)
Q Consensus 333 ~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~N 412 (808)
.+|++.+++.+.+||+.+..|||||+|..|+..++.+.+++++++||||++.+|+.+|..|||++|..++|++|+|+|||
T Consensus 323 en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGN 402 (567)
T KOG1247|consen 323 ENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGN 402 (567)
T ss_pred CCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcch
Q 003601 413 FINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFW 492 (808)
Q Consensus 413 l~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw 492 (808)
|++|++.|+.. .++|.+|... . ..-++.+++.++.+..++.++|+.-++++|++.+|++++++|.|+|..+.|
T Consensus 403 FvNR~l~fv~~----~~~g~Vp~~~-~--~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~ 475 (567)
T KOG1247|consen 403 FVNRVLKFVAA----KYNGVVPEME-L--TSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDN 475 (567)
T ss_pred HHHHHHHHHHH----hhCCccccee-e--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccccc
Confidence 99999999998 7999999753 1 112678999999999999999999999999999999999999999999999
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccccccccccCccccccCCCcCCCCCCccCCCC
Q 003601 493 KLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPN 572 (808)
Q Consensus 493 ~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~ 572 (808)
++...+++++.+++.+.++++..++.||+||||.++.+|+.||+++... +. ...+-.|++||+||+++
T Consensus 476 k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~---~~---------~~~~~~l~~gH~ig~~~ 543 (567)
T KOG1247|consen 476 KLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETL---FP---------DRFICRLLAGHRIGTPS 543 (567)
T ss_pred chhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCcccc---CC---------CccceeecCcCccCCcc
Confidence 9988888999999999999999999999999999999999999998432 11 12345689999999999
Q ss_pred CCccCCChhHHHHHHhhhcCCh
Q 003601 573 PLFKELKDDEVEFFRSKFAGSQ 594 (808)
Q Consensus 573 ~LF~ri~~~~i~~~~~~~~~~~ 594 (808)
|||+|++.++|++++++|+|.+
T Consensus 544 pLFq~l~~~qiee~r~k~gg~q 565 (567)
T KOG1247|consen 544 PLFQKLDEDQIEEWRAKFGGQQ 565 (567)
T ss_pred HHHHhcCHHHHHHHHHhhcCCC
Confidence 9999999999999999998864
No 6
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-108 Score=961.19 Aligned_cols=547 Identities=44% Similarity=0.818 Sum_probs=496.4
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
+++||||+|||||||.|||||+++.|+.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++|+++++.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999965889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhc
Q 003601 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (808)
Q Consensus 101 ~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (808)
+|++|||++|.|++|++++|.+.++++|.+|+++|+||++.+.+|||+.|++||++++|.|+||. |++.+++|++||.
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCC--CCCcccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9998999999999
Q ss_pred cCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccC
Q 003601 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260 (808)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~ 260 (808)
||+.+++.++++|+|++||+++++++++||||++++++++|.++++.. ..||++.++.+.+||.++++||||||++.
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~---~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~ 236 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS---GDWPPNVLNFTLNWLKEGLKPRAITRDLD 236 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHhCCCCCcCceeeCC
Confidence 999999999999999999999999999999999999999999999853 24889999999999998899999999999
Q ss_pred CCcccCCccCCCceEEEEecccchhhhhccCCc------hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCC
Q 003601 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (808)
Q Consensus 261 WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~------~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~ 334 (808)
||+|+|....+++++||||||+++|++....+. +.|+.||. +.+...+|++|+||++||+++||+++++.+.+
T Consensus 237 WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~-ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~ 315 (556)
T PRK12268 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWL-DPETKSYYFIGKDNIPFHSIIWPAMLLGSGEP 315 (556)
T ss_pred CCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhC-CCCCeEEEEEeeccCcchHHHHHHHHHhcCCC
Confidence 999999555678999999999999997643332 35788994 33455699999999999999999999999855
Q ss_pred cccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Q 003601 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (808)
Q Consensus 335 ~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (808)
+++|+.+++||||+++|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++|+++.+....|++++++++|++
T Consensus 316 ~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~-~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 316 LKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALE-RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CCCCCEeeccCCEEECCeeeccCCCcccCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 56899999999999999999999999999999999 69999999999998888999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003601 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (808)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (808)
+|+.+++.+ .+++.+|.. ...+.|+++++.++.+.+.+.++|++|+|+.|++.+++|++.+|+|++..+||.+
T Consensus 395 ~r~~~~~~~----~~~~~~~~~---~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~ 467 (556)
T PRK12268 395 NRVLSFIEK----YFGGIVPPG---ELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467 (556)
T ss_pred HHHHHHHHH----hcCCcCCCC---cCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 999999876 444544421 2245688999999999999999999999999999999999999999999999988
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccccccccccCccccccCCCcCCCCCCccCCCCCC
Q 003601 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (808)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (808)
.+++.+.+..++++++++++.+++||+||||++|++||++||.+......|.. +..++.|++|+.+++|
T Consensus 468 ~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~-----------~~~~~~g~~i~~~~~l 536 (556)
T PRK12268 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWES-----------LKPLLPGHPINKPEPL 536 (556)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhh-----------hcCCCCCCCCCCCCCC
Confidence 76566667888999999999999999999999999999999973211112322 1136679999999999
Q ss_pred ccCCChhHHHHHHhhhcC
Q 003601 575 FKELKDDEVEFFRSKFAG 592 (808)
Q Consensus 575 F~ri~~~~i~~~~~~~~~ 592 (808)
|+|+++++++++++.++|
T Consensus 537 f~r~~~~~~~~~~~~~~~ 554 (556)
T PRK12268 537 FKKIDDEQIEEELERLGG 554 (556)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 999999999988887765
No 7
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=9.5e-108 Score=943.86 Aligned_cols=508 Identities=25% Similarity=0.472 Sum_probs=451.9
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
+++|+||+|||||||.||||||++ ++.+|+++||+|++|++|+|++||||||+||+.+|+++|++|+++|+++++.|++
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~-~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~ 146 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYT-TIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRT 146 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHH-HHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456999999999999999999997 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhc
Q 003601 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (808)
Q Consensus 101 ~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (808)
++++|||++|.|+||+++.|.+.||++|.+|+++|+||++++++|||++|++|+++.++.+
T Consensus 147 ~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~------------------- 207 (616)
T PLN02224 147 LWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE------------------- 207 (616)
T ss_pred HHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC-------------------
Confidence 9999999999999999999999999999999999999999999999999999998754421
Q ss_pred cCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccc-c
Q 003601 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD-L 259 (808)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~-~ 259 (808)
.+.|..||+++++++++||||+|++|++.|.+|+++++.+ .++.+.++.+.+||++||+||||||+ .
T Consensus 208 -----------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~-~~p~~~~~~~~~~l~~gL~d~~ISR~~~ 275 (616)
T PLN02224 208 -----------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRF-VQPSYRLNEVQSWIKSGLRDFSISRALV 275 (616)
T ss_pred -----------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhcCCCCccccCCCC
Confidence 2458889999999999999999999999999999887643 25777888999999999999999998 4
Q ss_pred CCCcccCCccCCCceEEEEecccchhhhhccCCchh------HhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCC
Q 003601 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (808)
Q Consensus 260 ~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~------~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~ 333 (808)
.||||||++ ++|||||||||++||+|++..+..+ +..|| |.+ +||+||||++||+++|||||+++|+
T Consensus 276 ~WGIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w--~~~---v~~iGKDii~fH~i~wpa~l~~~g~ 348 (616)
T PLN02224 276 DWGIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGW--PAS---LHLIGKDILRFHAVYWPAMLMSAGL 348 (616)
T ss_pred CCceECCCC--CCcEEEEehhhHHHHHHHhcccccccccchhhccCC--Ccc---eEEEeecccccHHHHHHHHHHHCCC
Confidence 899999977 7999999999999999987555421 23367 445 9999999999999999999999886
Q ss_pred CcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 003601 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (808)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl 413 (808)
++|+.+++||||+++|+|||||+||+|+|.++++ .||+|++||||++.+|+.+|++|+++.|.+++|++|+|++||+
T Consensus 349 --~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~-~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNl 425 (616)
T PLN02224 349 --ELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQ-KFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNL 425 (616)
T ss_pred --CCCcEEEecccEecCCccccccCCccCCHHHHHH-HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchh
Q 003601 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (808)
Q Consensus 414 ~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (808)
++|++.++.+ ++++.+|... .....+.++++.++.+.+++.++|+++++++|++.+++|++.+|+|++..+||+
T Consensus 426 l~R~l~~~~k----~~~~~~~~~~--~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 426 LNRTLGLLKK----NCESTLVEDS--TVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHHHH----hcCCcCCCcc--ccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 9999999988 7777766431 112235689999999999999999999999999999999999999999999999
Q ss_pred hccCC---hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccc--cccccccCccccccCCCcCCCCCCcc
Q 003601 494 LYKED---QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH--ISLCDEKGDVDRARRPWEIIPAGHKI 568 (808)
Q Consensus 494 l~k~~---~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~i 568 (808)
+.+++ .+++.+++++++++++.+++||+||||++|++||++||.+.... ..|.+ ..++.++.|+.+
T Consensus 500 l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~---------~~~~~~~~g~~i 570 (616)
T PLN02224 500 LFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSD---------TKWGGLKGGQVM 570 (616)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhh---------hccccCCCCCCC
Confidence 87753 24567888999999999999999999999999999999853211 12321 113346679999
Q ss_pred CCCCCCccCCChhHHHH
Q 003601 569 GSPNPLFKELKDDEVEF 585 (808)
Q Consensus 569 ~~~~~LF~ri~~~~i~~ 585 (808)
+++.|||+||+.++++.
T Consensus 571 ~~~~~Lf~ri~~~~~~~ 587 (616)
T PLN02224 571 EQASPVFARIELNPEKE 587 (616)
T ss_pred CCCCCCCCCcCcchHHH
Confidence 99999999999766544
No 8
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.1e-107 Score=950.14 Aligned_cols=525 Identities=42% Similarity=0.787 Sum_probs=485.5
Q ss_pred EEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003601 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (808)
Q Consensus 24 ~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (808)
|+||+|+|||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++.+.+.|+++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~-~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYT-TILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999996 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCC
Q 003601 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (808)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~ 183 (808)
+|||++|.|++|+++.|...++++|.+|.++|+||++.+.+|||+.|++|++|++|+|.||. |++++++|++|+.||+
T Consensus 80 ~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~--c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCC--CCCcccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccC-CC
Q 003601 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK-WG 262 (808)
Q Consensus 184 ~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~-WG 262 (808)
.+++.++++|+|++||+++++++++||||+|++++++|.+++++++....|+++..+.+.+||.++++||||||++. ||
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WG 237 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCC
Confidence 99999999999999999999999999999999999999999987665556888988999999999999999999999 99
Q ss_pred cccCCccCCCceEEEEecccchhhhhccCCc----hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccC
Q 003601 263 VPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLM 338 (808)
Q Consensus 263 ipvP~~~~~~~viyVWfDA~~~Yis~~~~~~----~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p 338 (808)
+|+|.| +++++||||||+++|++.+ ++. .+|++||+++.|++++|++|+||++||+++||||+++++. ++|
T Consensus 238 ipvP~~--~~~~~yvW~da~~~y~~~~-~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~--~~~ 312 (530)
T TIGR00398 238 IPVPND--PNKVVYVWFDALIGYISSL-GILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGL--PLP 312 (530)
T ss_pred eeCCCC--CCcEEEEeecchHHhHhhh-ccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCC--CCC
Confidence 999988 7899999999999999865 442 3688999865578899999999999999999999999985 589
Q ss_pred cEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003601 339 KTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVL 418 (808)
Q Consensus 339 ~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~ 418 (808)
+.+++|||++.+|+|||||+||+|+|.|+++ .||+|++|||+++.++..+|++|+++.+.++.|++++++++|+++|+.
T Consensus 313 ~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~-~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 313 TQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred CEEEeeccEEECCceecccCCceecHHHHHH-HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 699999999999988899999999999999999999999999999999
Q ss_pred HhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhhccCC
Q 003601 419 SFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED 498 (808)
Q Consensus 419 ~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~ 498 (808)
+++.+ ++++.+|... ...+.|+++++.++.+.+.+.++|++|+|+.|++.+++|+..+|+|++..+||.+.+++
T Consensus 392 ~~~~~----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 392 GFIKK----YFNGVLPSED--ITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHH----hcCCcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh
Confidence 99887 5556555321 22456889999999999999999999999999999999999999999999999988654
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccccccccccCccccccCCCcCCCCCCccCCCCCCccCC
Q 003601 499 QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL 578 (808)
Q Consensus 499 ~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~LF~ri 578 (808)
. ++.++++++.++++.++++|+||||++|++||++||.+.. |.. .+ .++.|+.++++.+||+||
T Consensus 466 ~-~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~----~~~----------~~-~~~~~~~i~~~~~lf~ki 529 (530)
T TIGR00398 466 P-RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELE----WDF----------KL-KLLEGHKLNKAEPLFSKI 529 (530)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChh----hhh----------hc-CCCCCCCCCCCCCCCCCC
Confidence 4 6778899999999999999999999999999999998632 101 01 245699999999999998
Q ss_pred C
Q 003601 579 K 579 (808)
Q Consensus 579 ~ 579 (808)
+
T Consensus 530 ~ 530 (530)
T TIGR00398 530 E 530 (530)
T ss_pred C
Confidence 6
No 9
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-106 Score=835.51 Aligned_cols=479 Identities=28% Similarity=0.469 Sum_probs=428.3
Q ss_pred CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (808)
Q Consensus 20 ~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (808)
+.+++++|||++|||..|||||+|+ .|.+|+++||+|++|..|+|.+||||||+||+.+|+.+|..|.++||+..+.|+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS-~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~ 115 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYS-TLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFR 115 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHH-HHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHH
Confidence 4458999999999999999999998 577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccccc-ccCCCCCCCCCCcCCchh
Q 003601 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQC 178 (808)
Q Consensus 100 ~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~c~~~~~~g~~c 178 (808)
++++.+||.++.|+|||+|.|+..||++|..+..+|+||.+.+++|||++||+|++++.|. ..||.
T Consensus 116 qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------- 182 (578)
T KOG0436|consen 116 QLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------- 182 (578)
T ss_pred HHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999764 44543
Q ss_pred hccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccc
Q 003601 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (808)
Q Consensus 179 e~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (808)
| .++...+|+++.++++++|||+||+|+..|.+|++++|.+. -|+...+.+.+||+.||+|++|||.
T Consensus 183 ---g---------k~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fv-qPs~~~~qVl~~lktglpDlSISRp 249 (578)
T KOG0436|consen 183 ---G---------KVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFV-QPSYFHNQVLSWLKTGLPDLSISRP 249 (578)
T ss_pred ---C---------ceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCcc-CchHHHHHHHHHHHcCCCcccccCh
Confidence 1 13455689999999999999999999999999999999764 4666778899999999999999994
Q ss_pred ---cCCCcccCCccCCCceEEEEecccchhhhhccCCch-------hHhhhcCCCCCcceEEEEeeccccchhcHHHHHh
Q 003601 259 ---LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-------EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTL 328 (808)
Q Consensus 259 ---~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~-------~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l 328 (808)
+.||||+|++ +.|+|||||||++||||.. +|+. .+..+|| +. +|+|||||++||++||||||
T Consensus 250 sarl~WGIPvP~d--dsQtIYVWfDAL~nYiSvi-g~~~~~~N~k~~ls~~wP--at---~HvIGKDIlrFHavYWPafL 321 (578)
T KOG0436|consen 250 SARLDWGIPVPGD--DSQTIYVWFDALLNYISVI-GYPNKQQNLKTALSFGWP--AT---LHVIGKDILRFHAVYWPAFL 321 (578)
T ss_pred hhhcccCCCCCCC--CcceEEEeHHHHhhHHHhh-cCCchhccccceeecCCC--ce---eeehhhhhhhhhhhhhHHHH
Confidence 7899999987 7999999999999999974 6663 3566785 44 89999999999999999999
Q ss_pred hhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHH
Q 003601 329 LGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (808)
Q Consensus 329 ~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~ 408 (808)
|++|++ +|+.|++||||+.+|.|||||+||||+|.++++ .||+|++||||++++..+.|.||+.+.+....|++|++
T Consensus 322 maAGlp--lP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~-kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 322 MAAGLP--LPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQ-KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred HhcCCC--CccEEEEeeeeeecceecchhhccccCHHHHHH-HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 999995 999999999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003601 409 NLGNFINRVLS--FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (808)
Q Consensus 409 ~l~Nl~~R~~~--~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi 486 (808)
++||+++|+++ +..+. ...+.+-.. ......+..+.+.+..+.+.+.+.+++|.+.+|++.++++++.+|.|+
T Consensus 399 ~lG~LlnRc~gkkln~sn---~e~~l~~~s--~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlv 473 (578)
T KOG0436|consen 399 TLGNLLNRCLGKKLNISN---CESTLVVDS--PTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLV 473 (578)
T ss_pred HHHHHHHHHhhcccChhc---cccccccCC--cchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhh
Confidence 99999999998 32221 011222111 111222346788899999999999999999999999999999999999
Q ss_pred HhhcchhhccCC---hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCcc
Q 003601 487 QESQFWKLYKED---QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEK 541 (808)
Q Consensus 487 ~~~~pw~l~k~~---~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~ 541 (808)
+..+||++.++. .+.+..++..+++++|++++||+|++|.+|.+++++||++.+.
T Consensus 474 q~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~q 531 (578)
T KOG0436|consen 474 QQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQ 531 (578)
T ss_pred hhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhh
Confidence 999999998753 3567788899999999999999999999999999999998654
No 10
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=7.7e-101 Score=851.21 Aligned_cols=385 Identities=41% Similarity=0.817 Sum_probs=342.6
Q ss_pred EEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003601 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (808)
Q Consensus 24 ~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (808)
||||||+|||||.|||||++ ++|.||+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|+++|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCC
Q 003601 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (808)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~ 183 (808)
+|||++|.|+||++++|++.|+++|++|+++|+||++++++|||+.|++|++|++|+|+||. |++..++|++|+.||+
T Consensus 80 ~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~--C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 80 ALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPY--CGSDKARGDQCENCGR 157 (391)
T ss_dssp HTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETT--T--SSCTTTEETTTSS
T ss_pred HcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccC--cCccccCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCc
Q 003601 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263 (808)
Q Consensus 184 ~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGi 263 (808)
.+++.+|++|+|..||++++++++++|||+|++|+++|.+|+++.+.+ |+++.++.+.+||++||+||||||+.+|||
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI 235 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF--PPPRVREIVRNWLKEGLPDLSISRPLDWGI 235 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS--SHHHHHHHHHHHHHT----EE-ECTTSSSE
T ss_pred CcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC--CChhHHHHHHHHhhcccCceeeecCCCCcc
Confidence 999999999999999999999999999999999999999999987654 899999999999999999999999999999
Q ss_pred ccCCccCCCceEEEEecccchhhhhccCCc------hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCccc
Q 003601 264 PVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337 (808)
Q Consensus 264 pvP~~~~~~~viyVWfDA~~~Yis~~~~~~------~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~ 337 (808)
|+|++ ++|||||||||+++|++.+..+. ..|.+||.++.+++++||+||||++||+++|||||+|+++ ++
T Consensus 236 ~vP~~--~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~--~l 311 (391)
T PF09334_consen 236 PVPGD--PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL--PL 311 (391)
T ss_dssp EETTE--EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB----
T ss_pred eeecc--CCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccC--CC
Confidence 99954 89999999999999999875543 3689999556788999999999999999999999999876 58
Q ss_pred CcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 003601 338 MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRV 417 (808)
Q Consensus 338 p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~ 417 (808)
|+++++||||+++|+|||||+||+|++.|+++ .|++|++||||++.+|+.+|.+|+++.|.+++|++|+|++||+++|+
T Consensus 312 P~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~-~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 312 PRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLE-EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp -SEEEEE--EEETTCCEETTTTESSBHHHHHH-HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CCEEEeeeeEEECCeeccccCCcccCHHHHHH-hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 99999999999999999999999999999999 59999999999999999999999999999999999999999999998
Q ss_pred H
Q 003601 418 L 418 (808)
Q Consensus 418 ~ 418 (808)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 5
No 11
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-95 Score=842.23 Aligned_cols=502 Identities=30% Similarity=0.551 Sum_probs=450.1
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (808)
++|+||+|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++|+++++.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~-~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYT-TLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999996 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhcc
Q 003601 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (808)
Q Consensus 102 ~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~c 181 (808)
|++|||.+|.|++|+++.|...|+++|.+|+++|+||++.+.+|||++|++|++++++...
T Consensus 80 l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~------------------- 140 (511)
T PRK11893 80 WEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIED------------------- 140 (511)
T ss_pred HHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCC-------------------
Confidence 9999999999999999999999999999999999999999999999999999998765311
Q ss_pred CCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceecc-ccC
Q 003601 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-DLK 260 (808)
Q Consensus 182 G~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR-~~~ 260 (808)
.|+|++||+++++++++||||+|+.++++|.+++++++.. .++...++.+.+|++++++|||||| +++
T Consensus 141 ----------~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~D~~isR~~~~ 209 (511)
T PRK11893 141 ----------GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDF-IQPASRRNEVISFVKSGLKDLSISRTNFD 209 (511)
T ss_pred ----------CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHHCCCCCcccCCCCCC
Confidence 1679999999999999999999999999999999875321 3577778888999999999999999 899
Q ss_pred CCcccCCccCCCceEEEEecccchhhhhccCCc-------hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCC
Q 003601 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (808)
Q Consensus 261 WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~-------~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~ 333 (808)
||+|+|++ +++++||||||+++|++.. +++ +++..|| |.| +|++|+||++||+++|||++++++.
T Consensus 210 WGipiP~~--~~~~~~vWfda~~~y~s~~-~~p~~~~~~~~~~~~~~--~~D---~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 210 WGIPVPGD--PKHVIYVWFDALTNYLTAL-GYPDDEELLAELFNKYW--PAD---VHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred CCccCCCC--CCceEEEEecCcHHHHhHh-ccccccccchhHHHhcC--CCc---ceEecccccccchhHHHHHHHhCCC
Confidence 99999986 7999999999999999975 442 2588899 457 7999999999999999999999865
Q ss_pred CcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 003601 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (808)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl 413 (808)
++|+.+++||||+++|+|||||+||+|++.|+++ .||+|++||||++.+++++|++|+++.+.++.|++|.+.++|+
T Consensus 282 --~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~-~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~ 358 (511)
T PRK11893 282 --PLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVD-EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNL 358 (511)
T ss_pred --CCCCEEEeeccEEECCeeecccCCcEEcHHHHHH-HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999 6999999999999889999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchh
Q 003601 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (808)
Q Consensus 414 ~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (808)
++|+.+++.+ .+++.+|... ...+.|+++++.+..+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.
T Consensus 359 ~~r~~~~~~~----~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~ 432 (511)
T PRK11893 359 AQRTLSMIAK----NFDGKVPEPG--ALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHH----hcCCCCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 9999999876 4455555321 123457889999999999999999999999999999999999999999999998
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCCccccccccccCccccccCCCcCCCCCCccCCCCC
Q 003601 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNP 573 (808)
Q Consensus 494 l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~ 573 (808)
+.+++..++.+++++++++++.+++||+||||++|++||++||.+......|.+ ..+..++.|+.++.+++
T Consensus 433 ~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 503 (511)
T PRK11893 433 LAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAA---------LSWGRLAPGTTLPKPEP 503 (511)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchhh---------hhcccCCCCCCCCCCCC
Confidence 876667788999999999999999999999999999999999975332111211 01334667999999999
Q ss_pred CccCCCh
Q 003601 574 LFKELKD 580 (808)
Q Consensus 574 LF~ri~~ 580 (808)
||+||++
T Consensus 504 lf~~~~~ 510 (511)
T PRK11893 504 IFPRLEE 510 (511)
T ss_pred CccCCCC
Confidence 9999975
No 12
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=4e-85 Score=796.47 Aligned_cols=507 Identities=19% Similarity=0.261 Sum_probs=425.1
Q ss_pred CCCCCCCCCC--CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---
Q 003601 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED--- 83 (808)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~--- 83 (808)
|++...|.+. .++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+..+++.
T Consensus 18 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~-~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~ 96 (861)
T TIGR00422 18 WEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNW-SIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGA 96 (861)
T ss_pred HHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHH-HHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcc
Confidence 4455555543 356789999999999999999999985 5699999999999999999999999999999887753
Q ss_pred -CCCH------------HHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccC
Q 003601 84 -NCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (808)
Q Consensus 84 -g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (808)
|.++ .++++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++|||
T Consensus 97 ~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp 176 (861)
T TIGR00422 97 EGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDP 176 (861)
T ss_pred cCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCC
Confidence 6666 46799999999999999999998 34569999999999999999999999999999999999
Q ss_pred CCCccccccccc--------------------------------------------------------------------
Q 003601 149 TCKRFLADRLVE-------------------------------------------------------------------- 160 (808)
Q Consensus 149 ~~~~~l~d~~v~-------------------------------------------------------------------- 160 (808)
.|+|+|+|.+|+
T Consensus 177 ~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii 256 (861)
T TIGR00422 177 KLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPII 256 (861)
T ss_pred CCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceee
Confidence 999999998642
Q ss_pred ---------c-----cCCCCCCCCC----------------CcCCchhhccCCC------------------------CC
Q 003601 161 ---------G-----TCPFEGCNYE----------------SARGDQCENCGKL------------------------LN 186 (808)
Q Consensus 161 ---------g-----~cp~~~c~~~----------------~~~g~~ce~cG~~------------------------l~ 186 (808)
| .||. |+.. +..|..|+.||.. ..
T Consensus 257 ~~~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~ 334 (861)
T TIGR00422 257 ADEYVDMEFGTGAVKVTPA--HDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIE 334 (861)
T ss_pred ecCCCCcccCCCceEecCC--CChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeee
Confidence 1 1332 2211 3457788888754 12
Q ss_pred ccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccC
Q 003601 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVP 266 (808)
Q Consensus 187 ~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP 266 (808)
+.+...|+|+|||++++.+.++||||+++++++++.++++++... .+|++.++.+.+||++ ++|||||||+.||+|||
T Consensus 335 ~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~-~~P~~~~~~~~~wl~~-l~DW~ISRq~~WG~piP 412 (861)
T TIGR00422 335 PHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIK-FVPKRMEKRYLNWLRN-IKDWCISRQLIWGHRIP 412 (861)
T ss_pred eeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeE-EEChHHHHHHHHHHhc-cccceeeeecccCCcce
Confidence 234467999999999999999999999999999999999754321 2577888999999986 99999999999999999
Q ss_pred CccCC-----------------------------CceEEEEecccchhhhhccCCch---hHhhhcCCCCCcceEEEEee
Q 003601 267 LERFK-----------------------------EKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGK 314 (808)
Q Consensus 267 ~~~~~-----------------------------~~viyVWfDA~~~Yis~~~~~~~---~~~~~w~~p~d~~~vh~~Gk 314 (808)
.|.++ .+|+||||||.++|++.. +|+. +|+.|| |.| +|++|+
T Consensus 413 ~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~-g~p~~~~~~~~~~--P~d---~~~~G~ 486 (861)
T TIGR00422 413 VWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTL-GWPDETKDLKKFY--PTD---LLVTGY 486 (861)
T ss_pred EEEECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHh-CCCCChHHHhhcC--Ccc---eeecch
Confidence 87532 368899999999999864 7763 588889 567 899999
Q ss_pred ccccchhcHHHHHhhhCCCCcccCcEEEEeeeeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003601 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (808)
Q Consensus 315 Dii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~F 393 (808)
||++||..+|+++.+++... .|++.+++|||++. +|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|
T Consensus 487 Dii~fw~~~~~~~~~~~~~~-~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~~~~~~d~~f 564 (861)
T TIGR00422 487 DIIFFWVARMIFRSLALTGQ-VPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIE-KYGADALRFTLASLVTPGDDINF 564 (861)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCcee
Confidence 99999999999998887543 35599999999995 89999999999999999999 69999999999998888999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 003601 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLK 473 (808)
Q Consensus 394 s~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~ 473 (808)
+++.+... .+++|+||| +.|...+..+ .+++ ++... ......|+|++++++.+.+++.++|++|+|+.|++
T Consensus 565 ~~~~~~~~--~~~~nkl~N-~~rf~~~~~~----~~~~-~~~~~-~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~ 635 (861)
T TIGR00422 565 DWKRVESA--RNFLNKLWN-ASRFVLMNLS----DDLE-LSGGE-EKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAK 635 (861)
T ss_pred cHHHHHHH--HHHHHHHHH-HHHHHHhccc----cccc-ccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999876 559999999 5555544332 2222 22111 12345789999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 474 TAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 474 ~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
.+++|+ ..+|+|++..+||...+ +.+....++.++.++++.+++||+||||++|++||++|+..
T Consensus 636 ~l~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~ 701 (861)
T TIGR00422 636 ALYEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG 701 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc
Confidence 999997 68999999999998643 33456678889999999999999999999999999999853
No 13
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-82 Score=778.45 Aligned_cols=505 Identities=19% Similarity=0.247 Sum_probs=410.4
Q ss_pred CCCCCCCCCC---CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH---
Q 003601 9 PAAPPPKLPI---PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME--- 82 (808)
Q Consensus 9 ~~~~~~~~~~---~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~--- 82 (808)
|.+...+.+. .++++|+|+.|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||++++..+++
T Consensus 32 W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~-~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~ 110 (1052)
T PRK14900 32 WQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTA-TLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELK 110 (1052)
T ss_pred HHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhh-HHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhh
Confidence 4444444442 356789999999999999999999995 559999999999999999999999999999987765
Q ss_pred --cCCCH------------HHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeec
Q 003601 83 --DNCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPY 146 (808)
Q Consensus 83 --~g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y 146 (808)
.|.++ .++++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++|
T Consensus 111 ~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~w 190 (1052)
T PRK14900 111 KTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINW 190 (1052)
T ss_pred hccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceecc
Confidence 24433 34789999999999999999887 556799999999999999999999999999999999
Q ss_pred cCCCCcccccccccccC--------------------------CCC--CCCC----------------------------
Q 003601 147 CDTCKRFLADRLVEGTC--------------------------PFE--GCNY---------------------------- 170 (808)
Q Consensus 147 ~~~~~~~l~d~~v~g~c--------------------------p~~--~c~~---------------------------- 170 (808)
|+.|++.|+|.+|+... |.+ +|.+
T Consensus 191 cp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ip 270 (1052)
T PRK14900 191 CPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFP 270 (1052)
T ss_pred CCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeE
Confidence 99999999999886421 110 0000
Q ss_pred ---C-----CcCCchh---------------------------------hccCC----------------------CCC-
Q 003601 171 ---E-----SARGDQC---------------------------------ENCGK----------------------LLN- 186 (808)
Q Consensus 171 ---~-----~~~g~~c---------------------------------e~cG~----------------------~l~- 186 (808)
+ ..+|..| +.+|. ++.
T Consensus 271 Ii~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~ 350 (1052)
T PRK14900 271 IVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGA 350 (1052)
T ss_pred EEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecc
Confidence 0 0011111 11111 000
Q ss_pred -ccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCccc
Q 003601 187 -ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPV 265 (808)
Q Consensus 187 -~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipv 265 (808)
..+...|+|||||++++.+.++||||+++.+++++.++++++.. ..+|.+..+.+.+||. +++|||||||++||+||
T Consensus 351 ~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~PI 428 (1052)
T PRK14900 351 KPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT-RFIPEQWTNTYMAWMR-NIHDWCISRQLWWGHQI 428 (1052)
T ss_pred eeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEeecCCCcee
Confidence 11224689999999999999999999999999999999976432 1367888889999998 59999999999999999
Q ss_pred CCccC-------------------------CCceEEEEecccchhhhhccCCch---hHhhhcCCCCCcceEEEEeeccc
Q 003601 266 PLERF-------------------------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNV 317 (808)
Q Consensus 266 P~~~~-------------------------~~~viyVWfDA~~~Yis~~~~~~~---~~~~~w~~p~d~~~vh~~GkDii 317 (808)
|.|.+ +.+||||||||+++|++.+ +|+. +|+.|| |.| +|++|+||+
T Consensus 429 P~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~-g~p~~~~~~~~~~--P~d---~~~~G~Dii 502 (1052)
T PRK14900 429 PAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTM-GWPEQTDTLRTFY--PTS---VMETGHDII 502 (1052)
T ss_pred CeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHH-cCCCchHHHHhhC--Cch---hhcccccHH
Confidence 99843 3489999999999999875 6753 588899 556 799999999
Q ss_pred cchhcHHHHHhhhCCCC---cccCcEEEEeeeeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003601 318 PFHTVMFPSTLLGTGEN---WTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (808)
Q Consensus 318 ~fH~i~~pa~l~a~g~~---~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~F 393 (808)
+| |+++++++++. ..|++.|++|||++. +|+|||||+||+|+|.++++ .||+|+|||||++.++.++|++|
T Consensus 503 ~~----W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe-~yGaDalR~~L~~~~~~g~D~~f 577 (1052)
T PRK14900 503 FF----WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITE-QYGADALRFTLAALTAQGRDIKL 577 (1052)
T ss_pred hH----HHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHH-HhCcHHHHHHHHhcCCCCCCCcc
Confidence 76 77877775541 235699999999986 99999999999999999999 69999999999998899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCC--CCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 003601 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGY--GSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQG 471 (808)
Q Consensus 394 s~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~--~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a 471 (808)
+++.+... ++|+|+||| ++|++.+..+ .+ ++..+.. ......|+|+++.++.++.++.++|++|+|+.|
T Consensus 578 s~~~l~~~--~~f~nkl~N-~~R~~~~~~~----~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A 648 (1052)
T PRK14900 578 AKERIEGY--RAFANKLWN-ASRFALMNLS----GYQERGEDPAR--LARTPADRWILARLQRAVNETVEALEAFRFNDA 648 (1052)
T ss_pred cHHHHHHH--HHHHHHHHH-HHHHHHHhhh----ccCcccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999654 579999999 5777765433 22 2323221 122457899999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 472 LKTAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 472 l~~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
++.+++|+ ..+|+||+..+|| +.+++..+...+++++.++++.+++||+||||++|++||++|+.
T Consensus 649 ~~~i~~f~~~~~~n~Yie~~k~~-l~~~~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 649 ANAVYAFVWHELCDWYIELAKEA-LASEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHHHhhhHHHHHhccHh-hccCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcc
Confidence 99999997 4799999999886 44445555566788899999999999999999999999999974
No 14
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-82 Score=765.04 Aligned_cols=504 Identities=22% Similarity=0.269 Sum_probs=416.6
Q ss_pred CCCCCCCCCC--CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH-cCC
Q 003601 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-DNC 85 (808)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~-~g~ 85 (808)
|++...+.+. .++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|||+||+||+.+|++ .|+
T Consensus 23 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~-~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~ 101 (800)
T PRK13208 23 WEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFS-YTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGI 101 (800)
T ss_pred HHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHh-HHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCC
Confidence 3444444432 35678999999999999999999998 5779999999999999999999999999999999998 498
Q ss_pred CHH------------HHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCC
Q 003601 86 SPK------------EICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCK 151 (808)
Q Consensus 86 ~p~------------e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~ 151 (808)
+++ ++++++++.|+++|++||+++| ++++|+++.|.+.|+++|.+|+++|+||++.+.++||+.|+
T Consensus 102 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 181 (800)
T PRK13208 102 RKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCE 181 (800)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCC
Confidence 876 5999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred ccccccccc------------------------ccCCCC--CCCC-----------------------------------
Q 003601 152 RFLADRLVE------------------------GTCPFE--GCNY----------------------------------- 170 (808)
Q Consensus 152 ~~l~d~~v~------------------------g~cp~~--~c~~----------------------------------- 170 (808)
++|+|++|+ .+||.+ ||.+
T Consensus 182 t~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V 261 (800)
T PRK13208 182 TAIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLV 261 (800)
T ss_pred CccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCcc
Confidence 999999763 456642 2211
Q ss_pred ----------CCcCCchhh-----------------------ccC----------------------CCCCccccC--CC
Q 003601 171 ----------ESARGDQCE-----------------------NCG----------------------KLLNATDLK--DP 193 (808)
Q Consensus 171 ----------~~~~g~~ce-----------------------~cG----------------------~~l~~~el~--~p 193 (808)
...+++.|| +|| ..+...++. .|
T Consensus 262 ~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p 341 (800)
T PRK13208 262 DPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVK 341 (800)
T ss_pred CCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCC
Confidence 001234443 232 222222332 49
Q ss_pred ccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCC--
Q 003601 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK-- 271 (808)
Q Consensus 194 ~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~-- 271 (808)
+|+|||++++++.++||||+++++++++++++++... +|++.++.+.+||++..+|||||||+.||+|||.|.++
T Consensus 342 ~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~---~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~ 418 (800)
T PRK13208 342 FCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINW---YPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDC 418 (800)
T ss_pred ccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEE---ECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCC
Confidence 9999999999999999999999999999999977543 57778889999999733499999999999999974321
Q ss_pred ------------------------------------CceEEEEecccchhhhhccCCch---hHhhhcCCCCCcceEEEE
Q 003601 272 ------------------------------------EKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFM 312 (808)
Q Consensus 272 ------------------------------------~~viyVWfDA~~~Yis~~~~~~~---~~~~~w~~p~d~~~vh~~ 312 (808)
.+|+|+|||+.+.|++.+ +|+. .++.|| |.| +++.
T Consensus 419 g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~-~~~~~~~~~~~~~--P~d---~~~~ 492 (800)
T PRK13208 419 GHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVT-GWERDEDLFEKVF--PMD---LRPQ 492 (800)
T ss_pred CCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHh-CCCCChhhhhhcC--Cce---EEEe
Confidence 379999999999888653 6643 477788 567 8999
Q ss_pred eeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCc
Q 003601 313 GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 391 (808)
Q Consensus 313 GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~ 391 (808)
|+||++||..++.++..++... .+++.+++|||++ .+|+|||||+||+|+|.++++ .||+|++||||+ .+++++|+
T Consensus 493 G~Di~~~w~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~yg~D~lR~~l~-~~~~~~d~ 569 (800)
T PRK13208 493 GHDIIRTWLFYTILRAYLLTGK-LPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLE-KYGADAVRYWAA-SARLGSDT 569 (800)
T ss_pred ecchhhhHHHHHHHHHHHhcCC-CCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHH-HcCccHHHHHHh-cCCCCCCc
Confidence 9999999998887665554332 3569999999998 599999999999999999999 699999999999 68899999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 003601 392 LFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQG 471 (808)
Q Consensus 392 ~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a 471 (808)
+|+++.+.. +++++++|+|+++++.. ..+ .+..+.. ......|++++++++.+.+++.++|++|+|+.|
T Consensus 570 ~fs~~~~~~--~~~~l~kl~N~~r~~~~-~~~------~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A 638 (800)
T PRK13208 570 PFDEKQVKI--GRRLLTKLWNASRFVLH-FSA------DPEPDKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAKA 638 (800)
T ss_pred eecHHHHHH--HHHHHHHHHHHHHHHHh-ccc------ccccCcc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999865 68999999999876652 221 0111111 123457899999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcC
Q 003601 472 LKTAMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (808)
Q Consensus 472 l~~i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg 536 (808)
++.+++|+. .+|.|++..+||.......+.+..+++++.++++.+++||+||||++|++||++|+
T Consensus 639 ~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 639 LEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 999999986 59999999999876433333356788899999999999999999999999999998
No 15
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-80 Score=753.28 Aligned_cols=501 Identities=19% Similarity=0.239 Sum_probs=406.8
Q ss_pred CCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----c
Q 003601 9 PAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----D 83 (808)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~----~ 83 (808)
|.+...+.+.. .+++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||++++.+.++ +
T Consensus 22 W~~~~~f~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~-~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~ 100 (874)
T PRK05729 22 WEEKGYFKPDDNSKKPFSIVIPPPNVTGSLHMGHALNN-TLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAE 100 (874)
T ss_pred HHHCCCcccCcCCCCCEEEecCCCCCCCcchHHHHHHH-HHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhc
Confidence 34445554432 34569999999999999999999985 569999999999999999999999999987766544 4
Q ss_pred CCCHHH------------HHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCC
Q 003601 84 NCSPKE------------ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDT 149 (808)
Q Consensus 84 g~~p~e------------~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~ 149 (808)
|+++.+ +++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++||+.
T Consensus 101 g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~ 180 (874)
T PRK05729 101 GKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPK 180 (874)
T ss_pred CCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCC
Confidence 777665 589999999999999999988 456799999999999999999999999999999999999
Q ss_pred CCcccccccccc------------------------------------------------------cCCCCCCCC-----
Q 003601 150 CKRFLADRLVEG------------------------------------------------------TCPFEGCNY----- 170 (808)
Q Consensus 150 ~~~~l~d~~v~g------------------------------------------------------~cp~~~c~~----- 170 (808)
|+|+|+|.+|+. .||. |+.
T Consensus 181 ~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~--~~~~ipii 258 (874)
T PRK05729 181 LQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPL--VGREIPII 258 (874)
T ss_pred CCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCC--CCCeeeEe
Confidence 999999999862 1332 111
Q ss_pred -----C---------------------------------CcCCchhhccCCCC------------------------Ccc
Q 003601 171 -----E---------------------------------SARGDQCENCGKLL------------------------NAT 188 (808)
Q Consensus 171 -----~---------------------------------~~~g~~ce~cG~~l------------------------~~~ 188 (808)
+ +.+|..++.||..- .+.
T Consensus 259 ~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~ 338 (874)
T PRK05729 259 ADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPH 338 (874)
T ss_pred cCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEe
Confidence 0 12344555555310 111
Q ss_pred ccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCc
Q 003601 189 DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE 268 (808)
Q Consensus 189 el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~ 268 (808)
+...|+|+|||++++.+.++||||+++++++++.+++++... ..+|++.++.+.+||++ ++|||||||+.||+|||.|
T Consensus 339 ~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i-~~~P~~~~~~~~~wl~~-l~DWcISRq~~WG~pIP~~ 416 (874)
T PRK05729 339 THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEI-KFVPERWEKTYFHWMEN-IQDWCISRQLWWGHRIPAW 416 (874)
T ss_pred eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHhc-CccceeeeecccCCcccEE
Confidence 334799999999999999999999999999999999975432 23678888999999986 9999999999999999976
Q ss_pred cCCC----------------------ceEEEEecccchhhhhccCCch---hHhhhcCCCCCcceEEEEeeccccchhcH
Q 003601 269 RFKE----------------------KVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (808)
Q Consensus 269 ~~~~----------------------~viyVWfDA~~~Yis~~~~~~~---~~~~~w~~p~d~~~vh~~GkDii~fH~i~ 323 (808)
.+++ +|+++|||+.+.|++.+ +|++ +++.|| |.| +|++|+||++|
T Consensus 417 ~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~l-gwp~~~~~~~~~~--P~d---~~~~G~Dii~~---- 486 (874)
T PRK05729 417 YDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTL-GWPEKTEDLKRFY--PTS---VLVTGFDIIFF---- 486 (874)
T ss_pred EeCCCcEEeCCcccccccccCeEeCCceecceecCCccHHHHh-CCCCCcHHHHhcC--Ccc---cccccccccch----
Confidence 5432 46677888888888764 7753 577888 567 89999999997
Q ss_pred HHHHhhhCCCC--c-ccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHH
Q 003601 324 FPSTLLGTGEN--W-TLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQ 399 (808)
Q Consensus 324 ~pa~l~a~g~~--~-~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~ 399 (808)
|+|++++.+.. . .|++.+++|||++ .+|+|||||+||+|+|.|+++ .||+|+|||||++.++.++|++|+++.+.
T Consensus 487 W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~-~yGaDalR~~ll~~~~~~~Di~fs~~~l~ 565 (874)
T PRK05729 487 WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLID-KYGADALRFTLAALASPGRDIRFDEERVE 565 (874)
T ss_pred HHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCceeCHHHHH
Confidence 66666554431 1 2459999999998 799999999999999999999 69999999999998888999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 003601 400 AKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479 (808)
Q Consensus 400 ~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~ 479 (808)
.. .+++|+|+|+.+.+...+.+ ...+.++.. ......|+|++++++.+.+++.++|++|+|+.|++.+++|+
T Consensus 566 ~~--~~~~nkl~N~~Rf~~~~~~~----~~~~~~~~~--~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~ 637 (874)
T PRK05729 566 GY--RNFANKLWNASRFVLMNLEG----ADVGELPDP--EELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFI 637 (874)
T ss_pred HH--HHHHHHHHHHHHHHHHhccc----CCccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 76 56999999965544322222 222222211 12345789999999999999999999999999999999998
Q ss_pred --HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 480 --SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 480 --~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
..+|.|++..+||. . . .. ...+++++.++++.+++||+||||++|++||++|+.
T Consensus 638 ~~~~~~~Yle~~k~~l-~-~-~~-~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 638 WNEFCDWYLELAKPVL-Q-E-AA-KRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHHHHHHHHHHHHHHh-h-h-hH-HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 57999999999994 3 2 22 457788999999999999999999999999999974
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-78 Score=738.57 Aligned_cols=509 Identities=18% Similarity=0.226 Sum_probs=409.5
Q ss_pred CCCCCCCCCC--CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----
Q 003601 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME---- 82 (808)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~---- 82 (808)
|++...+.+. .++++|+|++|||||||.||||||++. +.+|+++||+||+||+|+|++|||+||+|++.+.++
T Consensus 73 W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~-~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~ 151 (958)
T PLN02943 73 WESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFV-TLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLAS 151 (958)
T ss_pred HHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHH-HHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHH
Confidence 4445555543 356779999999999999999999985 569999999999999999999999999999886654
Q ss_pred cCCCH------------HHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccC
Q 003601 83 DNCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (808)
Q Consensus 83 ~g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (808)
+|+++ .++++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++||+
T Consensus 152 ~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp 231 (958)
T PLN02943 152 EGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSP 231 (958)
T ss_pred cCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCC
Confidence 36644 35678999999999999999887 67889999999999999999999999999999999999
Q ss_pred CCCccccccccccc--------------------------CCCC--CCCC-----C------------------------
Q 003601 149 TCKRFLADRLVEGT--------------------------CPFE--GCNY-----E------------------------ 171 (808)
Q Consensus 149 ~~~~~l~d~~v~g~--------------------------cp~~--~c~~-----~------------------------ 171 (808)
.|+|.|+|.+|+.. -|.+ ||.+ +
T Consensus 232 ~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipi 311 (958)
T PLN02943 232 NLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPI 311 (958)
T ss_pred CCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeE
Confidence 99999999988621 1110 0100 0
Q ss_pred ----------------------------------------CcCCchhhccCCC------------------C--CccccC
Q 003601 172 ----------------------------------------SARGDQCENCGKL------------------L--NATDLK 191 (808)
Q Consensus 172 ----------------------------------------~~~g~~ce~cG~~------------------l--~~~el~ 191 (808)
+..|..-+.+|.. + ++.+..
T Consensus 312 i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~ 391 (958)
T PLN02943 312 IADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLR 391 (958)
T ss_pred EecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecC
Confidence 0011111222321 1 122345
Q ss_pred CCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccC-
Q 003601 192 DPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF- 270 (808)
Q Consensus 192 ~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~- 270 (808)
.|+|+|||++++.+.++|||++++.+++++.+++++... ..+|.+.++.+.+|+. +++|||||||+.||+|||.|.+
T Consensus 392 ~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i-~~~P~~~~~~~~~wl~-~l~DWcISRQr~WG~pIP~w~~~ 469 (958)
T PLN02943 392 VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGEL-TIIPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIV 469 (958)
T ss_pred CCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEEecCCCCccCceecc
Confidence 799999999999999999999999999999999975432 1256777888999998 6999999999999999998753
Q ss_pred ---------------------------------CCceEEEEecccchhhhhccCCch----hHhhhcCCCCCcceEEEEe
Q 003601 271 ---------------------------------KEKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMG 313 (808)
Q Consensus 271 ---------------------------------~~~viyVWfDA~~~Yis~~~~~~~----~~~~~w~~p~d~~~vh~~G 313 (808)
+.+|+||||||.+.|++.+ +|++ +|+.|| |.| +++.|
T Consensus 470 ~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~l-gwp~~~~~~~~~~y--P~d---l~~~G 543 (958)
T PLN02943 470 GKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSAEDFKKFY--PTT---VLETG 543 (958)
T ss_pred ccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhc-CCCccChHHHhccC--CCe---EEEEe
Confidence 3589999999999998875 6753 578888 567 89999
Q ss_pred eccccchhcHHHHHhhhCCCCc--c-cCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCC
Q 003601 314 KDNVPFHTVMFPSTLLGTGENW--T-LMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389 (808)
Q Consensus 314 kDii~fH~i~~pa~l~a~g~~~--~-~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~ 389 (808)
+||++| |++.+++.+... . |++++++|||++ .+|+|||||+||+|+|.++++ .||+|++||||++. ++++
T Consensus 544 ~Dii~f----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~-~~~~ 617 (958)
T PLN02943 544 HDILFF----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIK-EFGTDALRFTLALG-TAGQ 617 (958)
T ss_pred ehHHHH----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHH-hcCChHHHHHHHhC-CCCC
Confidence 999976 888766655431 2 458899999997 799999999999999999999 69999999999984 5699
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCC---------CCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHH
Q 003601 390 DTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG---------QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYL 460 (808)
Q Consensus 390 D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~---------~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~ 460 (808)
|++|+++.|.. +++++++|+|+.+++...+..... ..+++..+. ......|+|++++++.+++++.
T Consensus 618 d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~D~wilskl~~~i~~v~ 692 (958)
T PLN02943 618 DLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESL---LSLPLPECWVVSKLHELIDSVT 692 (958)
T ss_pred CccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccccccCCccccc---cccCHHHHHHHHHHHHHHHHHH
Confidence 99999999986 599999999998877654321000 012211110 1234578999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHH--HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 461 EAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 461 ~~~~~~~~~~al~~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
++|++|+|+.|++.+++|+ ..+|+|++..+||...+++......++.++..+++.+++||+|||||+|++||++|+.
T Consensus 693 ~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~ 771 (958)
T PLN02943 693 TSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPY 771 (958)
T ss_pred HHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCC
Confidence 9999999999999999995 6899999999998543333334566788899999999999999999999999999974
No 17
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.5e-77 Score=736.04 Aligned_cols=508 Identities=18% Similarity=0.248 Sum_probs=401.6
Q ss_pred CCCCCCCCC----CCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-
Q 003601 9 PAAPPPKLP----IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED- 83 (808)
Q Consensus 9 ~~~~~~~~~----~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~- 83 (808)
|++...+.. ..++++|++++|||||||.|||||+++. +.+|+++||+||+||+|.|++|||+||+||+.+++++
T Consensus 21 W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~-~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~l 99 (1159)
T PLN02882 21 WSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAG-TIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKL 99 (1159)
T ss_pred HHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHH-HHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHc
Confidence 444444433 2467789999999999999999999985 5699999999999999999999999999999999644
Q ss_pred CCC----------------HHHHHHHHHHHHHHHHHhcC--ccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeee
Q 003601 84 NCS----------------PKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145 (808)
Q Consensus 84 g~~----------------p~e~~~~~~~~~~~~~~~lg--I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~ 145 (808)
|++ |++++.+|.+.+++++++|| +.+|+.++|+++.|.+.|+++|.+|+++|+||++.+.++
T Consensus 100 gi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~ 179 (1159)
T PLN02882 100 GIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMP 179 (1159)
T ss_pred CCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEe
Confidence 653 56789999999999999999 556789999999999999999999999999999999999
Q ss_pred ccCCCCccccccccc--c---------------------------cCCCC--CCC----C-CC-----------------
Q 003601 146 YCDTCKRFLADRLVE--G---------------------------TCPFE--GCN----Y-ES----------------- 172 (808)
Q Consensus 146 y~~~~~~~l~d~~v~--g---------------------------~cp~~--~c~----~-~~----------------- 172 (808)
||+.|+|.|++.+++ . |.|++ +|. . +.
T Consensus 180 wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a 259 (1159)
T PLN02882 180 YSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVA 259 (1159)
T ss_pred ecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEh
Confidence 999999999976552 0 11211 000 0 00
Q ss_pred --------------------------------------------------------c------------CCc--------
Q 003601 173 --------------------------------------------------------A------------RGD-------- 176 (808)
Q Consensus 173 --------------------------------------------------------~------------~g~-------- 176 (808)
+ .|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPa 339 (1159)
T PLN02882 260 ESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPA 339 (1159)
T ss_pred HHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCC
Confidence 0 000
Q ss_pred -------hhhc---------------------------------------------cCCCCCcccc--CCCccccCCCCc
Q 003601 177 -------QCEN---------------------------------------------CGKLLNATDL--KDPKCKVCRNAP 202 (808)
Q Consensus 177 -------~ce~---------------------------------------------cG~~l~~~el--~~p~c~~~g~~~ 202 (808)
.|.. +|.++...++ .+|+|||||+|+
T Consensus 340 hG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpl 419 (1159)
T PLN02882 340 FGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPL 419 (1159)
T ss_pred CChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEE
Confidence 0000 1111111122 259999999999
Q ss_pred EEeeccceeEeccchHHHHHHHHHcCCCCCCCChhH-HHHHHHHHHccCccceeccccCCCcccCCccCCC---------
Q 003601 203 QIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA-IQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE--------- 272 (808)
Q Consensus 203 ~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~--------- 272 (808)
+++.++|||++++++++++++..++..+. |++. .+.+.+||++ ++|||||||+.||+|+|.|.+++
T Consensus 420 i~~a~~qWFi~~~~~k~~~l~~~~~i~w~---P~~~~~~r~~~wl~~-~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s 495 (1159)
T PLN02882 420 IYRAVPSWFVKVEEIKDRLLENNKQTYWV---PDYVKEKRFHNWLEN-ARDWAVSRSRFWGTPLPIWISDDGEEVVVIGS 495 (1159)
T ss_pred EEEecceeEEEcHHHHHHHHHhhCCcEEE---CCcchhhHHHHHHhc-CcccceeeccccCCccceEEeCCCCeEEecCc
Confidence 99999999999999999999977665433 4444 3688999987 99999999999999999874210
Q ss_pred ----------------------------------------ceEEEEecccchhhhhccCCch----hHhhhcCCCCCcce
Q 003601 273 ----------------------------------------KVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVEL 308 (808)
Q Consensus 273 ----------------------------------------~viyVWfDA~~~Yis~~~~~~~----~~~~~w~~p~d~~~ 308 (808)
+|+|||||+.+...+. .+|+. .|..+| |+|
T Consensus 496 ~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~-~~~p~e~~~~f~~~~--PaD--- 569 (1159)
T PLN02882 496 IAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAY-IHYPFENKELFEKNF--PAD--- 569 (1159)
T ss_pred HHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHH-cCCcccChhHhhccC--Cce---
Confidence 6899999998887765 37762 466778 567
Q ss_pred EEEEeeccccchhcHHHHHhhhCC---CCcccCcEEEEeeeeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhc
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTG---ENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTN 384 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g---~~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~ 384 (808)
+++.|+||+++ |+++++.++ .+.++|+++++|||++. +|+|||||+||+|+|.++++ .||+|+|||||++.
T Consensus 570 ~i~eG~Dq~Rg----Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~-~YGADaLR~~Ll~s 644 (1159)
T PLN02882 570 FVAEGLDQTRG----WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVID-KYGADALRLYLINS 644 (1159)
T ss_pred EEEEecchhhh----HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHH-HhCcHHHHHHHHhC
Confidence 89999999997 455444332 12368999999999996 89999999999999999999 69999999999974
Q ss_pred CC-CCCCcccCHHHHHHHHHHHHHHHHHH----HHHHHHHhHhCCCCCCCCCcCCCCC-C--cCChHHHHHHHHHHHHHH
Q 003601 385 RP-EVSDTLFTWADLQAKSNNELLNNLGN----FINRVLSFIAKPPGQGYGSIVPDAN-G--AESHQLTKTLAEKVGKYV 456 (808)
Q Consensus 385 ~~-~~~D~~Fs~~~l~~~~n~~l~~~l~N----l~~R~~~~~~k~~~~~~~g~~p~~~-~--~~~~~~d~~l~~~l~~~~ 456 (808)
.. .++|++|+++.+.+..+ +.+++++| +++++..+..+ ++++..|... . .....+|+|++++++.+.
T Consensus 645 ~~~~~~d~~fs~~~v~~~~~-~~l~kl~Na~rfl~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li 719 (1159)
T PLN02882 645 PVVRAEPLRFKEEGVFGVVK-DVFLPWYNAYRFLVQNAKRLEVE----GGAPFVPLDLAKLQNSANVLDRWINSATQSLV 719 (1159)
T ss_pred CcccCcCcccCHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhc----cccCCCccccccccccCCHHHHHHHHHHHHHH
Confidence 33 36889999999887543 33445555 55554444333 4455555321 0 122467999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHc
Q 003601 457 EQYLEAMEKVKLKQGLKTAMSISS-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (808)
Q Consensus 457 ~~v~~~~~~~~~~~al~~i~~l~~-~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (808)
+.+.++|++|+|++|++.|++|+. .+|+|++..+||...+.+.+++.++++++.++++.+++||+||||++|++||++|
T Consensus 720 ~~v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L 799 (1159)
T PLN02882 720 KFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNL 799 (1159)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHh
Confidence 999999999999999999999997 6999999999998876555667889999999999999999999999999999999
Q ss_pred CC
Q 003601 536 NL 537 (808)
Q Consensus 536 g~ 537 (808)
+.
T Consensus 800 ~~ 801 (1159)
T PLN02882 800 RK 801 (1159)
T ss_pred cc
Confidence 74
No 18
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=7.8e-78 Score=733.37 Aligned_cols=494 Identities=20% Similarity=0.264 Sum_probs=405.5
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CCC------H----
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS------P---- 87 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~~------p---- 87 (808)
.++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+.+|+++ |++ +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~~-~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~ 111 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALNK-ILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIE 111 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHHH-HHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHH
Confidence 467789999999999999999999985 5699999999999999999999999999999999876 654 3
Q ss_pred ------HHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccc
Q 003601 88 ------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (808)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (808)
+++++++.+.++++|++||++.| +.+.|++|.|.+.++++|.+|+++|+||++...++||+.|+|.|+|.+|
T Consensus 112 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev 191 (861)
T TIGR00392 112 EFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEV 191 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHH
Confidence 48899999999999999999765 7889999999999999999999999999999999999999999999988
Q ss_pred ccc-------CCC------------------------------C--CCC----C-CC-----------c-----------
Q 003601 160 EGT-------CPF------------------------------E--GCN----Y-ES-----------A----------- 173 (808)
Q Consensus 160 ~g~-------cp~------------------------------~--~c~----~-~~-----------~----------- 173 (808)
+.. +|. + +|. . +. .
T Consensus 192 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~ 271 (861)
T TIGR00392 192 EYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEK 271 (861)
T ss_pred hcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHH
Confidence 532 110 0 000 0 00 0
Q ss_pred --------C---------------------Cchh----------------------------------------------
Q 003601 174 --------R---------------------GDQC---------------------------------------------- 178 (808)
Q Consensus 174 --------~---------------------g~~c---------------------------------------------- 178 (808)
+ +...
T Consensus 272 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~ 351 (861)
T TIGR00392 272 LYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVL 351 (861)
T ss_pred HHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcc
Confidence 0 0000
Q ss_pred ---hccCCC-------------CCc-----------------------c--ccCCCccccCCCCcEEeeccceeEeccch
Q 003601 179 ---ENCGKL-------------LNA-----------------------T--DLKDPKCKVCRNAPQIRDTNHLFLDLPAL 217 (808)
Q Consensus 179 ---e~cG~~-------------l~~-----------------------~--el~~p~c~~~g~~~~~~~~~~~f~~l~~~ 217 (808)
+.-|+. +.. . ...+|+|||||++++++.++|||++++++
T Consensus 352 ~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~ 431 (861)
T TIGR00392 352 SPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDI 431 (861)
T ss_pred cccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHH
Confidence 000110 000 0 01248999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCC--------------------------
Q 003601 218 RNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK-------------------------- 271 (808)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~-------------------------- 271 (808)
++++++++++... +|...++.+.+||+ +++|||||||+.||+|+|.|.++
T Consensus 432 k~~~l~~~~~i~~---~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w 507 (861)
T TIGR00392 432 KDQMLEQIKKVNW---VPEWGEGRFGNWLE-NRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAW 507 (861)
T ss_pred HHHHHHHhCCcEE---ECchHHHHHHHHHh-CCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccc
Confidence 9999999987543 46677888999998 59999999999999999986432
Q ss_pred -------------------------CceEEEEecccchhhhhccCCch---hHhhhcCCCCCcceEEEEeecccc--chh
Q 003601 272 -------------------------EKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVP--FHT 321 (808)
Q Consensus 272 -------------------------~~viyVWfDA~~~Yis~~~~~~~---~~~~~w~~p~d~~~vh~~GkDii~--fH~ 321 (808)
.+|+||||||+++|++.. +|+. +|+.|| |.| +|++|+||++ ||+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~-~~~~~~~~f~~~~--P~d---~~i~G~Di~r~Wf~~ 581 (861)
T TIGR00392 508 FEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASI-HYPFENEKFKEVF--PAD---FILEGSDQTRGWFYS 581 (861)
T ss_pred cccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhc-CCCCCcchhhccC--Cce---EEEEecchhccHHHH
Confidence 249999999999999865 4643 477788 567 8999999998 999
Q ss_pred cHHHHHhhhCCCCcccCcEEEEeeeeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHH
Q 003601 322 VMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQA 400 (808)
Q Consensus 322 i~~pa~l~a~g~~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~ 400 (808)
.+|+++++. +. .||+.+++|||++. +|+|||||+||+|+|.|+++ .||+|++||||++. ++++|++|+++.+..
T Consensus 582 ~~~~~~~~~-~~--~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~-~yGaDalR~~ll~~-~~~~D~~fs~~~l~~ 656 (861)
T TIGR00392 582 SLAIGTALF-GQ--APYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVIN-KYGADILRLYVASS-DPWEDLRFSDEILKQ 656 (861)
T ss_pred HHHHHHHHc-CC--CChHhhEecceEECCCCCCcCCCCCCCCCHHHHHH-HcCHHHHHHHHHhC-CCCCCceECHHHHHH
Confidence 999998763 44 48899999999984 89999999999999999999 69999999999997 889999999999876
Q ss_pred HHHHHHHHHHHHHHHHHH--HhHhCCCCCCCCC--cCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 003601 401 KSNNELLNNLGNFINRVL--SFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (808)
Q Consensus 401 ~~n~~l~~~l~Nl~~R~~--~~~~k~~~~~~~g--~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~ 476 (808)
.++++.|.++|+++++. +.+.+ ++. ..+.. ......|++++.+++.+.+++.++|++|+|+.|++.++
T Consensus 657 -~~~~~~n~l~N~~~~~~~~~~l~~-----~~~~~~~~~~--~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~ 728 (861)
T TIGR00392 657 -VVEKYRKIRWNTYRFLLTYANLDK-----FDPLFNSVAV--EKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQ 728 (861)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccc-----CCcccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45678999999998887 44433 221 11110 12345789999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHhhcc--hhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 477 SISSE--GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 477 ~l~~~--~N~yi~~~~p--w~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
+|+.. +|.|++..+| |...+++..+ ++..++..+++.+++||+||||++|++||++|+..
T Consensus 729 ~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~--~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~ 792 (861)
T TIGR00392 729 DFIVEELSNWYIRIIRDRLYCEAKDNDKR--AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG 792 (861)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc
Confidence 99875 9999999876 8776543222 56677888999999999999999999999999753
No 19
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.1e-77 Score=728.98 Aligned_cols=497 Identities=20% Similarity=0.310 Sum_probs=398.2
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CCC-----------
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS----------- 86 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~~----------- 86 (808)
.++++|+|++|||||||.|||||+++.+ .+|+++||+||+||+|.+.+|||+||+|||..+++. |++
T Consensus 38 ~~~~~f~i~~~PPy~nG~lH~GH~l~~t-~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~ 116 (975)
T PRK06039 38 EGGPEFVFYDGPPTANGLPHYGHLLTRT-IKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIE 116 (975)
T ss_pred CCCCCEEEeCCCCCCCCCccHhhhHhhH-HHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHH
Confidence 4678899999999999999999999954 599999999999999999999999999999999875 765
Q ss_pred -----HHHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccc
Q 003601 87 -----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (808)
Q Consensus 87 -----p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (808)
|.++++++.+.+++++++||++.| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++|||.|+|.|++.+|
T Consensus 117 ~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev 196 (975)
T PRK06039 117 KFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEV 196 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHH
Confidence 678999999999999999997665 7889999999999999999999999999999999999999999999988
Q ss_pred ccc-C---------------------------CCC--CCC-----CCC----------c---------------------
Q 003601 160 EGT-C---------------------------PFE--GCN-----YES----------A--------------------- 173 (808)
Q Consensus 160 ~g~-c---------------------------p~~--~c~-----~~~----------~--------------------- 173 (808)
++. + |.+ +|. .++ .
T Consensus 197 ~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~ 276 (975)
T PRK06039 197 AQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVET 276 (975)
T ss_pred hhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEee
Confidence 721 1 110 000 000 0
Q ss_pred ------------------------------------CCchhh--------------------------ccCCCCC-----
Q 003601 174 ------------------------------------RGDQCE--------------------------NCGKLLN----- 186 (808)
Q Consensus 174 ------------------------------------~g~~ce--------------------------~cG~~l~----- 186 (808)
.|..|- .-|+..+
T Consensus 277 ~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~ 356 (975)
T PRK06039 277 FKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDY 356 (975)
T ss_pred ecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccc
Confidence 000000 0011100
Q ss_pred ------------------------cc--ccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHH
Q 003601 187 ------------------------AT--DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQ 240 (808)
Q Consensus 187 ------------------------~~--el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (808)
.. ....|+|||||++++++.++||||+++++++++++++++..+. |+..++
T Consensus 357 ~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~---P~~~~~ 433 (975)
T PRK06039 357 AGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWY---PEHIKD 433 (975)
T ss_pred cCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEE---Ccccch
Confidence 00 1236999999999999999999999999999999999775433 444555
Q ss_pred -HHHHHHHccCccceeccccCCCcccCCccCC------------------------------------------------
Q 003601 241 -ATHAWLKEGLKVRCITRDLKWGVPVPLERFK------------------------------------------------ 271 (808)
Q Consensus 241 -~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~------------------------------------------------ 271 (808)
.+.+||++ ++|||||||+.||+|||.|.++
T Consensus 434 ~~~~~wl~~-l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~ 512 (975)
T PRK06039 434 GRFGKWLEN-ARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRV 512 (975)
T ss_pred hhHHHHHhc-CccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEec
Confidence 78899975 9999999999999999986432
Q ss_pred CceEEEEecccchhhhhccCCch----hHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCC---CCcccCcEEEEe
Q 003601 272 EKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTG---ENWTLMKTISVT 344 (808)
Q Consensus 272 ~~viyVWfDA~~~Yis~~~~~~~----~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g---~~~~~p~~i~~h 344 (808)
.+|+||||||.+.|++.. +|+. .|+.|| |+| +++.|+||++| |.+.++.++ .+..+++.+++|
T Consensus 513 ~dVlDvWFdSg~~p~a~~-~~p~~~~~~f~~~~--Pad---~~~~G~Di~r~----Wf~~l~~~~~~~~~~~pfk~v~~h 582 (975)
T PRK06039 513 PDVIDVWFDSGSMPYAQL-HYPFENKEWFEKHF--PAD---FIVEGIDQTRG----WFYTLLALSTALFDRPPYKNVLVH 582 (975)
T ss_pred cccccceeecCCccHHHh-CCcccChhhhhccC--Cce---EEEechhhHhh----HHHHHHHHHHHhcCCCcccEEEEe
Confidence 289999999999998864 6643 377788 567 89999999986 444444322 112478999999
Q ss_pred eeeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 003601 345 EYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (808)
Q Consensus 345 g~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k 423 (808)
||++. +|+|||||+||+|+|.++++ .||+|++||||++.++.++|++||++.+.+.+|+.+ ++++|+++++..+..-
T Consensus 583 G~Vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l-~kl~N~~~f~~~y~~~ 660 (975)
T PRK06039 583 GHVLDEDGQKMSKSLGNYVDPFEVFD-KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFL-LTLWNVYSFFVLYANL 660 (975)
T ss_pred eeEECCCCCCcCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHH-HHHHHHHHHHHHHhhh
Confidence 99984 99999999999999999999 699999999999988889999999999877777666 9999999987643321
Q ss_pred CCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHhh--cchhhccCChH
Q 003601 424 PPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNAYLQES--QFWKLYKEDQP 500 (808)
Q Consensus 424 ~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~-~N~yi~~~--~pw~l~k~~~~ 500 (808)
. .++..............|+|++++++.+...+.++|++|+|+.|++.+++|+.. +|+|++.. ++|...+. .
T Consensus 661 -~--~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~-~- 735 (975)
T PRK06039 661 -D--GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDD-P- 735 (975)
T ss_pred -c--cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc-H-
Confidence 0 111110000011234679999999999999999999999999999999999965 69999876 45876432 2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 501 SCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
...+++.++.++++.+++||+||||++|++||++|+.
T Consensus 736 ~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 736 DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 2345778888999999999999999999999999985
No 20
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-76 Score=719.18 Aligned_cols=492 Identities=19% Similarity=0.264 Sum_probs=392.5
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc------CCCHH----
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED------NCSPK---- 88 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~------g~~p~---- 88 (808)
.++++|+|++|||||||.||||||++ ++.+|+++||+||+|++|.|++|||+||+||+.+|+++ ++++.
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~-~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~ 124 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALN-KILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRK 124 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHH-HHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHH
Confidence 46778999999999999999999998 56799999999999999999999999999999999885 67776
Q ss_pred ---HHHHHHHHHHHHHHHhcCcc--ccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccc--
Q 003601 89 ---EICDKYHVIHKDVYKWFDIS--FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG-- 161 (808)
Q Consensus 89 ---e~~~~~~~~~~~~~~~lgI~--~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g-- 161 (808)
++++++++.++++|++||++ +|+++.|+++.|.+.++++|.+|+++|+||++.++++||+.|++.|+|.+|+.
T Consensus 125 ~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~ 204 (912)
T PRK05743 125 KCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD 204 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc
Confidence 48899999999999999995 56899999999999999999999999999999999999999999999998862
Q ss_pred -cCC-----------------------------CC--CCC-----CCC----------cC--------------------
Q 003601 162 -TCP-----------------------------FE--GCN-----YES----------AR-------------------- 174 (808)
Q Consensus 162 -~cp-----------------------------~~--~c~-----~~~----------~~-------------------- 174 (808)
.+| .+ +|. .+. .+
T Consensus 205 ~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 284 (912)
T PRK05743 205 KTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYE 284 (912)
T ss_pred ccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceE
Confidence 111 10 000 000 00
Q ss_pred ------------------------------------Cchh---------------h-----------ccCCCCC------
Q 003601 175 ------------------------------------GDQC---------------E-----------NCGKLLN------ 186 (808)
Q Consensus 175 ------------------------------------g~~c---------------e-----------~cG~~l~------ 186 (808)
|..| . .-|++.+
T Consensus 285 ~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 364 (912)
T PRK05743 285 VLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFA 364 (912)
T ss_pred EEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccC
Confidence 0000 0 0011100
Q ss_pred -----------------------cc--ccCCCccccCCCCcEEeeccceeEeccc--hHHHHHHHHHcCCCCCCCChhHH
Q 003601 187 -----------------------AT--DLKDPKCKVCRNAPQIRDTNHLFLDLPA--LRNKLEEYINNMSVAGSWSQNAI 239 (808)
Q Consensus 187 -----------------------~~--el~~p~c~~~g~~~~~~~~~~~f~~l~~--~~~~l~~~~~~~~~~~~~~~~~~ 239 (808)
.. ...+|+|||||++++++.++|||+++++ +++.+++.+++..+. |+..+
T Consensus 365 Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~---P~~~~ 441 (912)
T PRK05743 365 GLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWI---PAWGK 441 (912)
T ss_pred CcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEE---ChHHH
Confidence 00 0136999999999999999999999998 999999999875543 55567
Q ss_pred HHHHHHHHccCccceeccccCCCcccCCccCCC--------------------ceEEEEecccchhhhh--ccCCc----
Q 003601 240 QATHAWLKEGLKVRCITRDLKWGVPVPLERFKE--------------------KVFYVWFDAPIGYVSI--TSCYT---- 293 (808)
Q Consensus 240 ~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~--------------------~viyVWfDA~~~Yis~--~~~~~---- 293 (808)
+.+.+||++ ++|||||||+.||+|||.+.+++ +.+++|||+...++.. ...+.
T Consensus 442 ~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~D 520 (912)
T PRK05743 442 NRIESMVEN-RPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETD 520 (912)
T ss_pred HHHHHHHhc-CcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCc
Confidence 788999987 99999999999999999965431 2345666655444422 00010
Q ss_pred -----------------hhHhhhcCCCCCcceEEEEeecccc--chhcHHHHHhhhCCCCcccCcEEEEeeeeec-CCCc
Q 003601 294 -----------------NEWEQWWKNPENVELYQFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGK 353 (808)
Q Consensus 294 -----------------~~~~~~w~~p~d~~~vh~~GkDii~--fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~-~G~K 353 (808)
...+.+| |+| +|++|+||++ ||+.+|+++++ .|. .||+.+++|||++. +|+|
T Consensus 521 vlDvWfdSg~s~~~~~~~~~~~~~--P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~--~P~k~vl~HG~vld~~G~K 592 (912)
T PRK05743 521 ILDVWFDSGSSHAAVLEQRPELGY--PAD---LYLEGSDQHRGWFQSSLLTSVAT-RGK--APYKQVLTHGFTVDGKGRK 592 (912)
T ss_pred hhhhhhhhCCCHHHHhcCccccCC--Cce---EEEecccccchHHHHHHHHHHHh-cCC--CccceeEEeeeEECCCCCC
Confidence 0012356 567 8999999995 88999999998 564 58999999999984 9999
Q ss_pred cccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCC---
Q 003601 354 FSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--- 430 (808)
Q Consensus 354 MSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~--- 430 (808)
||||+||+|+|.++++ .||+|+||||+++ +++++|++|+.+.+.+. +++.++|+|.++.+++.+.. ++
T Consensus 593 MSKSlGNvIdP~~ii~-~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~nl~~-----~~~~~ 663 (912)
T PRK05743 593 MSKSLGNVIDPQDVIK-KYGADILRLWVAS-TDYSGDVRISDEILKQV--AEAYRRIRNTLRFLLGNLND-----FDPAK 663 (912)
T ss_pred CCCCCCCcCCHHHHHH-hcChHHHHHHHHh-cCCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCccc
Confidence 9999999999999999 6999999999997 78899999999998874 78899999998876653332 21
Q ss_pred CcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhcchh--hccCChHHHHHHH
Q 003601 431 SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWK--LYKEDQPSCSIVM 506 (808)
Q Consensus 431 g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~--~~~N~yi~~~~pw~--l~k~~~~~~~~~l 506 (808)
+.++. .....+|++++++++.+.+++.++|++|+|++|++.+++|+ ..+|.|++..+||. ..+++ ....++.
T Consensus 664 ~~~~~---~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~-~~r~~~~ 739 (912)
T PRK05743 664 DAVPY---EELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADS-LARRSAQ 739 (912)
T ss_pred ccCCc---hhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCc-HHHHHHH
Confidence 11121 12346799999999999999999999999999999999999 57899999999964 33222 2234455
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHcC
Q 003601 507 RTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (808)
Q Consensus 507 ~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg 536 (808)
.++..++..+++||+||||++|++||++|+
T Consensus 740 ~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 740 TALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 667778888999999999999999999996
No 21
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-76 Score=677.74 Aligned_cols=509 Identities=20% Similarity=0.273 Sum_probs=415.2
Q ss_pred CCCCCCCCCCCCCC--CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc--
Q 003601 8 NPAAPPPKLPIPGK--RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-- 83 (808)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-- 83 (808)
.|.+.+.|.+..+. ++|.|.+|||||+|.||||||++.++ .|+++||+||+||+|+|++|+|++|.+++...+++
T Consensus 17 ~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl-~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~ 95 (877)
T COG0525 17 KWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLA 95 (877)
T ss_pred HHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHH-HHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHH
Confidence 46777788887443 66999999999999999999999665 99999999999999999999999999988877763
Q ss_pred --CCC------------HHHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeecc
Q 003601 84 --NCS------------PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYC 147 (808)
Q Consensus 84 --g~~------------p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~ 147 (808)
|++ +.++.+++...++++|++||+++| +.+.|+||.+.+.|++.|.+|+++|+||++++.+.||
T Consensus 96 ~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWc 175 (877)
T COG0525 96 AEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWC 175 (877)
T ss_pred HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCC
Confidence 554 346788899999999999999987 5678999999999999999999999999999999999
Q ss_pred CCCCcccccccccc-------------------------cCCCC--CCC-------------------------------
Q 003601 148 DTCKRFLADRLVEG-------------------------TCPFE--GCN------------------------------- 169 (808)
Q Consensus 148 ~~~~~~l~d~~v~g-------------------------~cp~~--~c~------------------------------- 169 (808)
|.|+|.++|.+|+. |-|.+ ||.
T Consensus 176 P~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIi 255 (877)
T COG0525 176 PKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPII 255 (877)
T ss_pred CccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeee
Confidence 99999999998873 11220 111
Q ss_pred ------------------CCC-------------------cCCchhhccC-C----------------------CCC--c
Q 003601 170 ------------------YES-------------------ARGDQCENCG-K----------------------LLN--A 187 (808)
Q Consensus 170 ------------------~~~-------------------~~g~~ce~cG-~----------------------~l~--~ 187 (808)
++| ..|..-++|+ . ++. +
T Consensus 256 aD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~ 335 (877)
T COG0525 256 ADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEP 335 (877)
T ss_pred cCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeee
Confidence 000 0121222232 1 111 1
Q ss_pred cccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCC
Q 003601 188 TDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPL 267 (808)
Q Consensus 188 ~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~ 267 (808)
....-|+|+|||++++...++|||+++..+++.+.+..++... ...|++..+...+|+++ ++|||||||+.||.+||.
T Consensus 336 ~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i-~f~P~~~~~~~~~W~~~-i~DWcISRQlwwGh~IPv 413 (877)
T COG0525 336 HKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKI-KFVPERMEKRYEDWMEN-IRDWCISRQLWWGHRIPV 413 (877)
T ss_pred ccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCc-eEecHHHHHHHHHHHhh-CcCceeeeeeecCcccce
Confidence 1123489999999999999999999999999999999884321 12477888889999986 889999999999999999
Q ss_pred ccCC-----------------------------CceEEEEecccchhhhhccCCch---hHhhhcCCCCCcceEEEEeec
Q 003601 268 ERFK-----------------------------EKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKD 315 (808)
Q Consensus 268 ~~~~-----------------------------~~viyVWfDA~~~Yis~~~~~~~---~~~~~w~~p~d~~~vh~~GkD 315 (808)
|.+. .+|+++||++.+-.++.+ +|++ ++++|. |.+ +.+.|.|
T Consensus 414 Wy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstl-gWp~~t~~l~~fy--Pt~---llvtG~D 487 (877)
T COG0525 414 WYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTL-GWPEETPDLKKFY--PTD---LLVTGHD 487 (877)
T ss_pred EEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhccccccccc-CCCCcchHHHhcC--CCc---cccccch
Confidence 9651 268999999998888865 8876 577776 556 7889999
Q ss_pred cccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccC
Q 003601 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (808)
Q Consensus 316 ii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs 394 (808)
|+||+..+...+.+.+... .|++.|+.||++. .+|+|||||+||||+|.++++ .||+|+|||+|+..+..++|++|+
T Consensus 488 IIffWvarmi~~~~~~~~~-~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-~yGaDAlRf~la~~~~~G~Di~~~ 565 (877)
T COG0525 488 IIFFWVARMIMRGLHLTGE-VPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-KYGADALRFTLASLASPGRDINFD 565 (877)
T ss_pred hhHHHHHHHHHHHHHhcCC-CCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH-HhChHHHHHHHHhccCCCcccCcC
Confidence 9999987754444444333 5789999999987 789999999999999999999 699999999999987889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 003601 395 WADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKT 474 (808)
Q Consensus 395 ~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~ 474 (808)
++.+... .+++|+++|..+.++....+ ... .+... ......|+|++++++++++.+.++|++|+|..|.+.
T Consensus 566 ~~~~~~~--rnF~nKlWNa~Rfv~~~~~~-----~~~-~~~~~-~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ 636 (877)
T COG0525 566 EKRVEGY--RNFLNKLWNATRFVLMNLDD-----LGP-DDLDL-LALSLADRWILSRLNETVKEVTEALDNYRFDEAARA 636 (877)
T ss_pred HHHHHHH--HHHHHHHHhHHHHHHhcccc-----cCc-ccccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999986 78999999999987764433 111 01000 122568999999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 475 AMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 475 i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
+.+|+. .|+.|++..+|-.... ++...++.+++..++..+..||+||||+++|+||+.|...
T Consensus 637 ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 637 LYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred HHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence 999995 4999999999854432 4444578889999999999999999999999999999763
No 22
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.2e-75 Score=720.04 Aligned_cols=500 Identities=18% Similarity=0.240 Sum_probs=402.3
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHH-----HcCCCH------
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM-----EDNCSP------ 87 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~-----~~g~~p------ 87 (808)
.++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||++++...+ +.|+++
T Consensus 57 ~~~~~f~i~~ppP~~~G~lHiGHa~~~-~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e 135 (995)
T PTZ00419 57 NSGKKFVIVLPPPNVTGYLHIGHALTG-AIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGRE 135 (995)
T ss_pred CCCCeEEEEeCCCCCCCCCcHHHHHHH-HHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHH
Confidence 367789999999999999999999985 56999999999999999999999999999966543 345543
Q ss_pred ------HHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccc
Q 003601 88 ------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (808)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (808)
.++++++++.++++|++||+++| ++++|+++.|.+.|+++|.+|+++|+||++.+.++|||.|+|.|+|.+|
T Consensus 136 ~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EV 215 (995)
T PTZ00419 136 EFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEV 215 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhc
Confidence 46789999999999999999988 7899999999999999999999999999999999999999999999987
Q ss_pred c---------------------cc---------------------CCCC--CCCC-------------------------
Q 003601 160 E---------------------GT---------------------CPFE--GCNY------------------------- 170 (808)
Q Consensus 160 ~---------------------g~---------------------cp~~--~c~~------------------------- 170 (808)
+ |. .|.+ ||.+
T Consensus 216 e~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~ 295 (995)
T PTZ00419 216 EFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPD 295 (995)
T ss_pred ccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCC
Confidence 6 21 1110 1100
Q ss_pred ------------CCcCCchh---------------------------------hccCCC---------------------
Q 003601 171 ------------ESARGDQC---------------------------------ENCGKL--------------------- 184 (808)
Q Consensus 171 ------------~~~~g~~c---------------------------------e~cG~~--------------------- 184 (808)
+..+|..| +++|.+
T Consensus 296 ~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~ 375 (995)
T PTZ00419 296 RKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGL 375 (995)
T ss_pred CEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCC
Confidence 00011111 111110
Q ss_pred -C--CccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCC
Q 003601 185 -L--NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (808)
Q Consensus 185 -l--~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~W 261 (808)
+ .......|+|||||++++.+.++|||++++.+++++.+++++++.. ..|+..++.+.+||.+ ++|||||||+.|
T Consensus 376 l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~-~~P~~~~~~~~~wl~~-l~DWcISRQr~W 453 (995)
T PTZ00419 376 LRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELK-IIPSSHENVWYHWLEN-IQDWCISRQLWW 453 (995)
T ss_pred EEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeE-EEChHHHHHHHHHHhc-cccceeeeeccc
Confidence 0 0001235899999999999999999999999999999999754421 2456678889999986 999999999999
Q ss_pred CcccCCccC-------------------------------------------CCceEEEEecccchhhhhccCCch---h
Q 003601 262 GVPVPLERF-------------------------------------------KEKVFYVWFDAPIGYVSITSCYTN---E 295 (808)
Q Consensus 262 GipvP~~~~-------------------------------------------~~~viyVWfDA~~~Yis~~~~~~~---~ 295 (808)
|+|||.|.+ +.+|+||||||.+.|++.+ +|+. +
T Consensus 454 G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~-g~p~~~~~ 532 (995)
T PTZ00419 454 GHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTL-GWPDQTDD 532 (995)
T ss_pred CceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHh-CCCCChHH
Confidence 999998732 1389999999999998764 7753 4
Q ss_pred HhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCC---cccCcEEEEeeeeec-CCCccccccCCccChhhhhhc-
Q 003601 296 WEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDT- 370 (808)
Q Consensus 296 ~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~---~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~- 370 (808)
++.|| |.| +++.|+||++| |++.++.++.. ..|++.+++|||+.- +|+|||||+||||+|.++++.
T Consensus 533 ~~~~~--P~d---~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~ 603 (995)
T PTZ00419 533 LQRFF--PTS---LLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGI 603 (995)
T ss_pred HhhcC--CCc---EEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCCcCChHHHhccc
Confidence 77788 567 89999999985 66666554431 134589999999985 899999999999999999871
Q ss_pred -----------------------------------CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHH
Q 003601 371 -----------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFIN 415 (808)
Q Consensus 371 -----------------------------------~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~ 415 (808)
.||+|++||||++.++.++|++|+.+.+... .+++|+|+|+++
T Consensus 604 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~--~~f~nklwN~~r 681 (995)
T PTZ00419 604 SLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGY--RHFCNKLWNAVK 681 (995)
T ss_pred chhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHH--HHHHHHHHHHHH
Confidence 4999999999999888899999999998854 789999999999
Q ss_pred HHHHhHhCCCCCCCCCcCCC----CCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhh
Q 003601 416 RVLSFIAKPPGQGYGSIVPD----ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQES 489 (808)
Q Consensus 416 R~~~~~~k~~~~~~~g~~p~----~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~--~~~N~yi~~~ 489 (808)
|++.++.. ...+..+. .........|+|++++++.+.+++.++|++|+|+.|++.+++|+ ..+|+|++..
T Consensus 682 f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~ 757 (995)
T PTZ00419 682 FALMKLLK----DFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELI 757 (995)
T ss_pred HHHhcccc----cccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 98876554 11111000 00012335799999999999999999999999999999999974 5699999999
Q ss_pred cchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 490 QFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 490 ~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
+||.....+.++...+.+++.++++.+++||+|||||+|++||++|+.
T Consensus 758 K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 758 KPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 999732233344566788899999999999999999999999999974
No 23
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.7e-74 Score=701.07 Aligned_cols=492 Identities=17% Similarity=0.206 Sum_probs=391.8
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcC----CC--------
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN----CS-------- 86 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g----~~-------- 86 (808)
.++++|+|++|||||||.||||||++. +.+|+++||+||+||+|.|++|||+||+|||.+++++. ..
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln~-~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~ 129 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALNK-ILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAE 129 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHH-HHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHH
Confidence 467789999999999999999999995 56999999999999999999999999999999887653 32
Q ss_pred ----HHHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccccc
Q 003601 87 ----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (808)
Q Consensus 87 ----p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (808)
+.++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++..+++||+.|++.|+|.+|+
T Consensus 130 f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Eve 209 (961)
T PRK13804 130 FRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIE 209 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcc
Confidence 345888899999999999999865 78899999999999999999999999999999999999999999997775
Q ss_pred cc-----------------------C--------CCC--CCC-----CCC------------------------------
Q 003601 161 GT-----------------------C--------PFE--GCN-----YES------------------------------ 172 (808)
Q Consensus 161 g~-----------------------c--------p~~--~c~-----~~~------------------------------ 172 (808)
.. + |++ +|. .+.
T Consensus 210 y~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~ 289 (961)
T PRK13804 210 YHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAE 289 (961)
T ss_pred cccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHH
Confidence 20 0 110 000 000
Q ss_pred ---------------------------------c-----C-------------Cch---------------hhccCC---
Q 003601 173 ---------------------------------A-----R-------------GDQ---------------CENCGK--- 183 (808)
Q Consensus 173 ---------------------------------~-----~-------------g~~---------------ce~cG~--- 183 (808)
. . |.. |..-|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~ 369 (961)
T PRK13804 290 SVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEI 369 (961)
T ss_pred HHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcc
Confidence 0 0 000 000011
Q ss_pred ---------CCC--cc-----------------------------------c--cCCCccccCCCCcEEeeccceeEecc
Q 003601 184 ---------LLN--AT-----------------------------------D--LKDPKCKVCRNAPQIRDTNHLFLDLP 215 (808)
Q Consensus 184 ---------~l~--~~-----------------------------------e--l~~p~c~~~g~~~~~~~~~~~f~~l~ 215 (808)
+.+ +. + ..+|+|||||++++++.++|||++++
T Consensus 370 ~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~ 449 (961)
T PRK13804 370 PVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMD 449 (961)
T ss_pred cccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcC
Confidence 000 00 0 13589999999999999999999999
Q ss_pred c-------hHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccC------------------
Q 003601 216 A-------LRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------ 270 (808)
Q Consensus 216 ~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~------------------ 270 (808)
. +++.+++.+++..+. |+..++.+.+||.+ ++|||||||+.||+|||.|.+
T Consensus 450 ~~~~~~~~~k~~al~~i~~v~~~---P~~~~~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~ 525 (961)
T PRK13804 450 KDLGDGTTLRSRALDAIDKTRFV---PAAGQNRLYNMIED-RPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADA 525 (961)
T ss_pred CcccchHHHHHHHHHHHhccEEE---CHHHHHHHHHHHhc-CccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHH
Confidence 8 999999999876543 45567788999976 899999999999999998532
Q ss_pred ------------------------------CCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeecccc--
Q 003601 271 ------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP-- 318 (808)
Q Consensus 271 ------------------------------~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~-- 318 (808)
+.+|++||||+.+.+.... +...++ +| |+| +|++|+||++
T Consensus 526 ~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~-~~~~~~--~~--PaD---~~~eG~Di~rgW 597 (961)
T PRK13804 526 FEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-EDRPDL--KW--PAD---LYLEGSDQHRGW 597 (961)
T ss_pred HHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccc-cCCccc--CC--Cce---EEEEEcccccHH
Confidence 1268999999976554321 111222 46 667 8999999995
Q ss_pred chhcHHHHHhhhCCC-CcccCcEEEEeeeeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHH
Q 003601 319 FHTVMFPSTLLGTGE-NWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 396 (808)
Q Consensus 319 fH~i~~pa~l~a~g~-~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~ 396 (808)
||+. +|++++. +..||+.+++|||++. +|+|||||+||+|+|.++++ .||+|+||||+++ .++++|++||++
T Consensus 598 F~s~----ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~-~yGaD~lRl~lls-~~~~~D~~fs~~ 671 (961)
T PRK13804 598 FNSS----LLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK-QSGADILRLWVAS-VDYSDDQRIGKE 671 (961)
T ss_pred HHHH----HHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-hcCHHHHHHHHHh-CCCCCCcccCHH
Confidence 8984 4444432 1247799999999985 99999999999999999999 6999999999997 678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCc-CCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 003601 397 DLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI-VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475 (808)
Q Consensus 397 ~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~-~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i 475 (808)
.+... ++++++|+|+++++++.+.. ...+. .+.. .....+|+|++++++.+.+++.++|++|+|++|++.+
T Consensus 672 ~l~~~--~~~~~kL~N~~rf~l~nl~~----~~~~~~~~~~--~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l 743 (961)
T PRK13804 672 ILKQV--SETYRKLRNTLRWLLGNLAH----FDPGEDVVAY--ADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKAL 743 (961)
T ss_pred HHHHH--HHHHHHHHHHHHHHHhcccc----CCcccccCCh--hhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 98764 78999999999888776654 11121 1111 1234578999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHhhcchhhccC-ChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 476 MSIS--SEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 476 ~~l~--~~~N~yi~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
++|+ ..+|.|++..+||..... +.....++..++..+++.+++||+||||++|++||++|+.
T Consensus 744 ~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 744 VNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccc
Confidence 9998 458999999999954322 3333455677888889999999999999999999999983
No 24
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=7.2e-74 Score=700.01 Aligned_cols=509 Identities=16% Similarity=0.203 Sum_probs=400.7
Q ss_pred CCCCCCCCCC--CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----
Q 003601 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME---- 82 (808)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~---- 82 (808)
|.+...+.+. .++++|+|++|||||||.|||||+++. +.+|+++||+||+||+|+|++|||+||+|++.++++
T Consensus 113 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~-ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 191 (1066)
T PLN02381 113 WEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTA-AIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMR 191 (1066)
T ss_pred HHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHH-HHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHh
Confidence 4455555543 457789999999999999999999985 569999999999999999999999999999999876
Q ss_pred -cCCCH------------HHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeecc
Q 003601 83 -DNCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYC 147 (808)
Q Consensus 83 -~g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~ 147 (808)
.|+++ .++++++...++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++||
T Consensus 192 ~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWc 271 (1066)
T PLN02381 192 ERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWD 271 (1066)
T ss_pred hcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCC
Confidence 36543 37789999999999999999887 6678999999999999999999999999999999999
Q ss_pred CCCCcccccccccccC--------------------------C---------------CC--CCCC-----C--------
Q 003601 148 DTCKRFLADRLVEGTC--------------------------P---------------FE--GCNY-----E-------- 171 (808)
Q Consensus 148 ~~~~~~l~d~~v~g~c--------------------------p---------------~~--~c~~-----~-------- 171 (808)
|.|+|.|+|.+|+.+- | .+ ||.+ +
T Consensus 272 P~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~ 351 (1066)
T PLN02381 272 CTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLH 351 (1066)
T ss_pred CCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhC
Confidence 9999999999664110 0 00 1100 0
Q ss_pred -----------------C------cCCc---------------------------------hhhccCC------------
Q 003601 172 -----------------S------ARGD---------------------------------QCENCGK------------ 183 (808)
Q Consensus 172 -----------------~------~~g~---------------------------------~ce~cG~------------ 183 (808)
+ .+|. ..+.||.
T Consensus 352 G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~ 431 (1066)
T PLN02381 352 GKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAARE 431 (1066)
T ss_pred CCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHH
Confidence 0 0111 1111211
Q ss_pred -----------CC--CccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHH---HcCCCCCC-CChhHHHHHHHHH
Q 003601 184 -----------LL--NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYI---NNMSVAGS-WSQNAIQATHAWL 246 (808)
Q Consensus 184 -----------~l--~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~-~~~~~~~~~~~~l 246 (808)
++ ...+...|+||||+++++.+.++|||++++.+++++.+.+ .+.. .. .|.+..+.+.+||
T Consensus 432 ~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~--i~~~P~~~~~~~~~wl 509 (1066)
T PLN02381 432 AVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKK--LEFIPKQYLAEWKRWL 509 (1066)
T ss_pred HHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCc--eEEEChHHHHHHHHHH
Confidence 01 1112246999999999999999999999999999999988 2211 12 3556677889999
Q ss_pred HccCccceeccccCCCcccCCccC-------------------------------------------CCceEEEEecccc
Q 003601 247 KEGLKVRCITRDLKWGVPVPLERF-------------------------------------------KEKVFYVWFDAPI 283 (808)
Q Consensus 247 ~~gl~d~~ISR~~~WGipvP~~~~-------------------------------------------~~~viyVWfDA~~ 283 (808)
.+ ++|||||||++||+|||.|.+ +.+|+|||||+.+
T Consensus 510 ~n-~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~ 588 (1066)
T PLN02381 510 EN-IRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGL 588 (1066)
T ss_pred hc-CccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCc
Confidence 86 999999999999999998853 2268999999999
Q ss_pred hhhhhccCCch---hHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccC
Q 003601 284 GYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKG 359 (808)
Q Consensus 284 ~Yis~~~~~~~---~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~G 359 (808)
.+++.+ +|+. +++.|| |.| +.+.|.||++|+-.....+-+.+... .|++.++.|||++ .+|+|||||+|
T Consensus 589 ~p~~~l-g~P~~~~~~~~~~--P~d---~~~~G~Dii~~W~~rmi~~~~~~~~~-~PFk~v~~hG~V~D~~G~KMSKS~G 661 (1066)
T PLN02381 589 FPLSVL-GWPDDTDDLKAFY--PTS---VLETGHDILFFWVARMVMMGMQLGGD-VPFRKVYLHPMIRDAHGRKMSKSLG 661 (1066)
T ss_pred hHHHHh-cCCCCHHHHhccC--CCe---eeeecchhhhhHHHHHHHHHHHhCCC-CchHHheecceEECCCCCCCCCCCC
Confidence 998764 7754 466566 677 78899999988654443333333322 5789999999988 68999999999
Q ss_pred CccChhhhhhc------------------------------------CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHH
Q 003601 360 IGVFGNDAKDT------------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (808)
Q Consensus 360 N~I~~~d~l~~------------------------------------~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n 403 (808)
|||+|.++++. .||+|+|||||++..+.++|++|+.+.+...
T Consensus 662 NvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~-- 739 (1066)
T PLN02381 662 NVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGY-- 739 (1066)
T ss_pred CCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHH--
Confidence 99999999871 3899999999998888889999999998754
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCCCC--cCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--
Q 003601 404 NELLNNLGNFINRVLSFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS-- 479 (808)
Q Consensus 404 ~~l~~~l~Nl~~R~~~~~~k~~~~~~~g--~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~-- 479 (808)
..++|+|+|++++++..+.. .+.. .++. .....+|+|++++++.++.++.++|++|+|+.|++.+++|+
T Consensus 740 r~f~nKlwNa~rf~~~~~~~----~~~~~~~~~~---~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~ 812 (1066)
T PLN02381 740 RQWCNKLWNAVRFAMSKLGD----DYTPPATLSV---ETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQY 812 (1066)
T ss_pred HHHHHHHHHHHHHHHhhccc----ccCcccccCc---cccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 78999999999976643321 1111 0110 12345799999999999999999999999999999999995
Q ss_pred HHHHHHHHhhcchhhccCC--hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 480 SEGNAYLQESQFWKLYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 480 ~~~N~yi~~~~pw~l~k~~--~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
..||.|++..+||...+.. ......+..++..++..+++||+|||||+|++||+.|+.
T Consensus 813 dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~ 872 (1066)
T PLN02381 813 QFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQ 872 (1066)
T ss_pred HhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhh
Confidence 5699999999999764321 122345566778888999999999999999999999963
No 25
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=4.1e-75 Score=633.74 Aligned_cols=316 Identities=48% Similarity=0.895 Sum_probs=290.4
Q ss_pred cEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003601 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (808)
Q Consensus 23 ~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 102 (808)
++|||+|+|||||.|||||+++. +.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|+++|+.+++.|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~-~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGT-VLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHH-HHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999985 56899999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccC
Q 003601 103 KWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCG 182 (808)
Q Consensus 103 ~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG 182 (808)
++|||++|.|++|+++.|...++++|++|.++|++|++++.++||+.|++||+
T Consensus 80 ~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------------------------- 132 (319)
T cd00814 80 KWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------------- 132 (319)
T ss_pred HHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------------------------
Confidence 99999999999999999999999999999999999999999999999999876
Q ss_pred CCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceecccc-CC
Q 003601 183 KLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-KW 261 (808)
Q Consensus 183 ~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~-~W 261 (808)
++++++||||+|++|++.|++++++++. ..||++.++.+.+||.++++||||||++ .|
T Consensus 133 --------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~-~~~p~~~~~~~~~~l~~~l~d~~isR~~~~W 191 (319)
T cd00814 133 --------------------EWREEEHYFFRLSKFQDRLLEWLEKNPD-FIWPENARNEVLSWLKEGLKDLSITRDLFDW 191 (319)
T ss_pred --------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCc-cCCCHHHHHHHHHHHhCCCcccCCCccCccc
Confidence 3678999999999999999999988653 2589999999999999999999999998 99
Q ss_pred CcccCCccCCCceEEEEecccchhhhhccCCchhHh--hhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCc
Q 003601 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWE--QWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK 339 (808)
Q Consensus 262 GipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~--~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~ 339 (808)
|||+|.+ +++++||||||+++|++++..+..... .||.. .+..++||+|+||++||+++||||+++++. ++|+
T Consensus 192 Gipvp~~--~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~-~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~--~~~~ 266 (319)
T cd00814 192 GIPVPLD--PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKD-GWPELVHFIGKDIIRFHAIYWPAMLLGAGL--PLPT 266 (319)
T ss_pred CeeCCCC--CCcEEEEehhhHHHHHHHcccccccccchhhhhc-CCCceEEEEeechhhhhHHHHHHHHHhCCC--CCCc
Confidence 9999986 799999999999999998744332110 23321 234469999999999999999999999985 5899
Q ss_pred EEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003601 340 TISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (808)
Q Consensus 340 ~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~F 393 (808)
.+++|||++++|+|||||+||+|++.++++ .|++|++||||++.+|+++|.+|
T Consensus 267 ~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~-~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 267 RIVAHGYLTVEGKKMSKSRGNVVDPDDLLE-RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred EeeeeeeEEECCeeecccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999 69999999999999999999998
No 26
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=9.9e-74 Score=695.80 Aligned_cols=490 Identities=17% Similarity=0.238 Sum_probs=390.7
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-------CCCHHH----
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCSPKE---- 89 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-------g~~p~e---- 89 (808)
+++|+|++|||||||.||||||++. +.+|+++||+||+|++|.|++|||+||+||+.+++++ +++|.+
T Consensus 31 ~~~f~i~~~PPy~nG~lHiGHa~~~-~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~ 109 (974)
T PLN02843 31 GESFTLHDGPPYANGDLHIGHALNK-ILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAK 109 (974)
T ss_pred CCCEEEeCCCCCCCCCcchhHHHHH-HHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHH
Confidence 4569999999999999999999996 4599999999999999999999999999999998543 345554
Q ss_pred ---HHHHHHHHHHHHHHhcCc--cccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccccccc--
Q 003601 90 ---ICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT-- 162 (808)
Q Consensus 90 ---~~~~~~~~~~~~~~~lgI--~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~-- 162 (808)
+++++.+.++++|++||+ .+|+.++|+++.|.+.++++|.+|+++|+||++.++++||++|++.|+|.+|+..
T Consensus 110 c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~ 189 (974)
T PLN02843 110 AAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEG 189 (974)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCC
Confidence 477888888999999999 4568899999999999999999999999999999999999999999999887621
Q ss_pred --CCC-------C------------------------------CCC-----CCCc-------------------------
Q 003601 163 --CPF-------E------------------------------GCN-----YESA------------------------- 173 (808)
Q Consensus 163 --cp~-------~------------------------------~c~-----~~~~------------------------- 173 (808)
.|. . ++. .+..
T Consensus 190 ~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~ 269 (974)
T PLN02843 190 HVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPG 269 (974)
T ss_pred ccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccc
Confidence 100 0 000 0000
Q ss_pred ------------------------------------------------------------------CCc-----------
Q 003601 174 ------------------------------------------------------------------RGD----------- 176 (808)
Q Consensus 174 ------------------------------------------------------------------~g~----------- 176 (808)
.|.
T Consensus 270 ~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~ 349 (974)
T PLN02843 270 NVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQ 349 (974)
T ss_pred cccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCH
Confidence 000
Q ss_pred ----------------------hhhcc----CCCC--Cc-------------------cccCCCccccCCCCcEEeeccc
Q 003601 177 ----------------------QCENC----GKLL--NA-------------------TDLKDPKCKVCRNAPQIRDTNH 209 (808)
Q Consensus 177 ----------------------~ce~c----G~~l--~~-------------------~el~~p~c~~~g~~~~~~~~~~ 209 (808)
+.+.+ |... +. ....+|+||||+++++.|.++|
T Consensus 350 ~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~Q 429 (974)
T PLN02843 350 EDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQ 429 (974)
T ss_pred HHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCc
Confidence 00011 1000 01 0123599999999999999999
Q ss_pred eeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccC-------------------
Q 003601 210 LFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------- 270 (808)
Q Consensus 210 ~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~------------------- 270 (808)
||++++.+++++++.+++..+.| +..++.+.+||.+ ++|||||||+.||+|||.|.+
T Consensus 430 WFi~~~~~k~~al~~~~~v~~~P---~~~~~r~~~~i~~-~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~ 505 (974)
T PLN02843 430 WFASVEGFRQAALDAIDKVKWIP---AQGENRIRAMVSG-RSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSI 505 (974)
T ss_pred eeEeCHHHHHHHHHHHhccEEEC---hHHHHHHHHHHhc-CcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHH
Confidence 99999999999999998876544 4456788999986 899999999999999995421
Q ss_pred -------------------------------CCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeecccc-
Q 003601 271 -------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP- 318 (808)
Q Consensus 271 -------------------------------~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~- 318 (808)
+.+|+|||||+.+.+.+.. +.. .+.+| |+| +|+.|+||++
T Consensus 506 ~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~-~~~--~~~~~--PaD---l~~eG~Di~rg 577 (974)
T PLN02843 506 VAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVL-GSR--EGLSY--PAD---LYLEGSDQHRG 577 (974)
T ss_pred HHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHh-ccc--cccCC--Cce---eeeeeccccch
Confidence 1268999999988776543 211 23357 567 8999999998
Q ss_pred -chhcHHHHHhhhCCCCcccCcEEEEeeeeec-CCCccccccCCccChhhhhhc--------CCCchhHHHHHHhcCCCC
Q 003601 319 -FHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDT--------NIPVEVWRYYLLTNRPEV 388 (808)
Q Consensus 319 -fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~--------~~~~D~lRy~ll~~~~~~ 388 (808)
||+.+|+++. +.|. .|++.+++|||++. +|+|||||+||+|+|.++++. .||+|+||||+++ ..++
T Consensus 578 Wf~s~l~~~~~-~~g~--~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~ 653 (974)
T PLN02843 578 WFQSSLLTSVA-TKGK--APYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYT 653 (974)
T ss_pred HHHHHHHHHHH-hcCC--CccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccC
Confidence 9999998873 3454 47899999999875 899999999999999999982 3999999999997 6789
Q ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCC--CcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 003601 389 SDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKV 466 (808)
Q Consensus 389 ~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~--g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~ 466 (808)
+|++|+.+.+.+. ++.+++|+|.+++++..+.. ++ ..++. .....+|+|++++++.+.+++.++|++|
T Consensus 654 ~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~-----~~~~~~~~~---~~~~~~D~wiLskL~~li~~v~~aye~y 723 (974)
T PLN02843 654 GDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHD-----WKPDNAVPY---EDLPSIDKYALFQLENVVNEIEESYDNY 723 (974)
T ss_pred CCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCcccccCc---cccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998876 67788999999887654432 21 11111 1234579999999999999999999999
Q ss_pred cHHHHHHHHHHH--HHHHHHHHHhhcchhhccC-ChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 467 KLKQGLKTAMSI--SSEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 467 ~~~~al~~i~~l--~~~~N~yi~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
+|++|++.|++| ...+|.||+..+||...+. +......+..++..++..+++||+||||++|++||++|+.
T Consensus 724 ~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~ 797 (974)
T PLN02843 724 QFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPF 797 (974)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccc
Confidence 999999999988 4589999999999987542 3322334455667777888999999999999999999985
No 27
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=5.6e-74 Score=698.80 Aligned_cols=493 Identities=19% Similarity=0.261 Sum_probs=394.8
Q ss_pred CCCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---
Q 003601 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED--- 83 (808)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~--- 83 (808)
.|++...|.+.. ++++|+||+||||+||.|||||+++ ++.+|+++||+||+|++|+|.+|||+||+||+..|++.
T Consensus 10 ~W~~~~~fe~~~~~~~kf~i~~ppPy~nG~lH~GH~~~-~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~ 88 (938)
T TIGR00395 10 RWEEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRT-FTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRR 88 (938)
T ss_pred HHHhCCCcccCCCCCCceEEecCCCCCCCCcccchhhh-hhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhh
Confidence 355566666543 4678999999999999999999998 56799999999999999999999999999999988772
Q ss_pred ------------C---------CCHHHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeec
Q 003601 84 ------------N---------CSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140 (808)
Q Consensus 84 ------------g---------~~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~ 140 (808)
+ .+|.++++++...++++|++||+++| +.+.|++|.|.+.|+++|.+|+++|+||++
T Consensus 89 ~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g 168 (938)
T TIGR00395 89 DELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKG 168 (938)
T ss_pred hhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecC
Confidence 1 45788999999999999999999988 567899999999999999999999999999
Q ss_pred eeeeeccCCCCcccccccccc-c--------------------------CCCC--CCC-----CCCc-------------
Q 003601 141 TMQQPYCDTCKRFLADRLVEG-T--------------------------CPFE--GCN-----YESA------------- 173 (808)
Q Consensus 141 ~~~~~y~~~~~~~l~d~~v~g-~--------------------------cp~~--~c~-----~~~~------------- 173 (808)
.+.++|||.|++.++|.++.. . .|.+ ||. -++.
T Consensus 169 ~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~ 248 (938)
T TIGR00395 169 EHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWIT 248 (938)
T ss_pred CeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEE
Confidence 999999999999999987742 0 1110 000 0000
Q ss_pred ---------------------------------------------------CCc--------------------------
Q 003601 174 ---------------------------------------------------RGD-------------------------- 176 (808)
Q Consensus 174 ---------------------------------------------------~g~-------------------------- 176 (808)
.|.
T Consensus 249 s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~ 328 (938)
T TIGR00395 249 SKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEY 328 (938)
T ss_pred eHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchh
Confidence 000
Q ss_pred -----------------------h-----hhc-------------------------cCCCCC-----------------
Q 003601 177 -----------------------Q-----CEN-------------------------CGKLLN----------------- 186 (808)
Q Consensus 177 -----------------------~-----ce~-------------------------cG~~l~----------------- 186 (808)
. |+. -|.+..
T Consensus 329 ~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i 408 (938)
T TIGR00395 329 LGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKV 408 (938)
T ss_pred cCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHH
Confidence 0 000 010000
Q ss_pred ------------cccc-CCCccccCCCCcEEe-eccceeEecc--chHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccC
Q 003601 187 ------------ATDL-KDPKCKVCRNAPQIR-DTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGL 250 (808)
Q Consensus 187 ------------~~el-~~p~c~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl 250 (808)
-.+. ..|+|+|||++++++ .++||||+++ .+++++.+++++... +|++.++.+.+||.. |
T Consensus 409 ~~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~---~P~~~~~~~~~~l~~-l 484 (938)
T TIGR00395 409 KADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRI---IPEEVKNAFEGKIDW-L 484 (938)
T ss_pred HHHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEE---eCHHHHHHHHHHHhh-h
Confidence 0112 347899999999987 9999999999 599999999987643 577888899999984 9
Q ss_pred ccceeccccCCCcccCCcc------CCCceEEEEecccchhhhhcc------------------------CCc-------
Q 003601 251 KVRCITRDLKWGVPVPLER------FKEKVFYVWFDAPIGYVSITS------------------------CYT------- 293 (808)
Q Consensus 251 ~d~~ISR~~~WGipvP~~~------~~~~viyVWfDA~~~Yis~~~------------------------~~~------- 293 (808)
+|||||||+.||+|+|.+. .+++++|+||+++.+|++... +++
T Consensus 485 ~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~ 564 (938)
T TIGR00395 485 KDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKL 564 (938)
T ss_pred hhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHH
Confidence 9999999999999999532 236899999999999875421 011
Q ss_pred -hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCC-cccCcEEEEeeeeecCCCccccccCCccChhhhhhcC
Q 003601 294 -NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTN 371 (808)
Q Consensus 294 -~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~-~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~ 371 (808)
.+|+.|| |.| +|++|+||++||+++| .+++++..+ .+.|+.+++|||++.+|+|||||+||+|+|.++++ .
T Consensus 565 ~~ef~~~y--P~D---~~~~GkDii~~H~~~~-i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~-~ 637 (938)
T TIGR00395 565 RREFEYWY--PLD---WRISGKDLIPNHLTFY-IFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVE-K 637 (938)
T ss_pred HHHHhhcC--Cce---EEEEeeccccchHHHH-HHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHH-H
Confidence 2466677 567 8999999999999999 445544432 13579999999999999999999999999999999 6
Q ss_pred CCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHH
Q 003601 372 IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEK 451 (808)
Q Consensus 372 ~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~ 451 (808)
||+|++||||++.+++++|++|+++.+.+..|. +++++|+++|+..... +..+ ......|++++++
T Consensus 638 yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~~--------~~~~----~~~~~~D~wlls~ 703 (938)
T TIGR00395 638 FGADVARLYIADAAETVQDADWKESEVEGTILR--LERLYEFAEEITKESN--------LETG----EETSFIDRWLESR 703 (938)
T ss_pred cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHhhcc--------cCCC----ccCChHHHHHHHH
Confidence 999999999999889999999999999988654 7799999988764321 1111 0123468999999
Q ss_pred HHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Q 003601 452 VGKYVEQYLEAMEKVKLKQGL-KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVE 530 (808)
Q Consensus 452 l~~~~~~v~~~~~~~~~~~al-~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~ 530 (808)
++.+.+++.++|++|+|+.|+ ..+++|+..+|.|+...++ ++. .++.++++.+++||+|||||+|++
T Consensus 704 l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~---------~~~---~~l~~~l~~~~~LLaP~~P~~aEe 771 (938)
T TIGR00395 704 MNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGGV---------NHK---DVLARYLETWIKLLAPFAPHFAEE 771 (938)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCcc---------hHH---HHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999 7788999999999764221 122 357788999999999999999999
Q ss_pred HHHHcCCC
Q 003601 531 VNKQLNLQ 538 (808)
Q Consensus 531 i~~~Lg~~ 538 (808)
||++||.+
T Consensus 772 iw~~Lg~~ 779 (938)
T TIGR00395 772 MWEEVGNE 779 (938)
T ss_pred HHHHcCCC
Confidence 99999853
No 28
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-74 Score=671.49 Aligned_cols=498 Identities=22% Similarity=0.334 Sum_probs=399.6
Q ss_pred CCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CC-----------
Q 003601 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC----------- 85 (808)
Q Consensus 18 ~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~----------- 85 (808)
..|++.|++.++|||+||.+|||||.+.+| .|++.||+.|+||+|.+++||||||+|||.+++++ |+
T Consensus 45 ~~g~~~FvfhDGPPyANG~iHiGHalnKil-KDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~ 123 (933)
T COG0060 45 NKGKPKFVLHDGPPYANGNIHIGHALNKIL-KDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVE 123 (933)
T ss_pred hCCCCcEEEeCCCCCCCCCcchhhhHHHhh-hhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHH
Confidence 468889999999999999999999999865 99999999999999999999999999999888775 42
Q ss_pred ----CHHHHHHHHHHHHHHHHHhcCccc--cccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccc
Q 003601 86 ----SPKEICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (808)
Q Consensus 86 ----~p~e~~~~~~~~~~~~~~~lgI~~--D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (808)
.|+++|.++.+.++++|++||+.. |+-|.|+++.|++.+.++|.+|+++|+||++..+++||++|++.|++.+|
T Consensus 124 efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEv 203 (933)
T COG0060 124 EFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEV 203 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhh
Confidence 356788889999999999999965 57889999999999999999999999999999999999999999999988
Q ss_pred cc-----------------------------cCCCC-------------------------------------CCC----
Q 003601 160 EG-----------------------------TCPFE-------------------------------------GCN---- 169 (808)
Q Consensus 160 ~g-----------------------------~cp~~-------------------------------------~c~---- 169 (808)
+. |.|++ ..+
T Consensus 204 ey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~ 283 (933)
T COG0060 204 EYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDY 283 (933)
T ss_pred cccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcce
Confidence 72 22321 000
Q ss_pred --------------------CC---------------------------CcCC----chhhccC----------------
Q 003601 170 --------------------YE---------------------------SARG----DQCENCG---------------- 182 (808)
Q Consensus 170 --------------------~~---------------------------~~~g----~~ce~cG---------------- 182 (808)
.. .++| ..|..-|
T Consensus 284 ~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~ 363 (933)
T COG0060 284 EVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTE 363 (933)
T ss_pred EEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccc
Confidence 00 0000 0121112
Q ss_pred -------------------------CCCCccc--cCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCC
Q 003601 183 -------------------------KLLNATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235 (808)
Q Consensus 183 -------------------------~~l~~~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 235 (808)
.++.... ..+|+||||++|+++|.++|||++++++++++++-+++..+.|.|-
T Consensus 364 ~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~ 443 (933)
T COG0060 364 EAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWG 443 (933)
T ss_pred cchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhH
Confidence 1111111 2479999999999999999999999999999998777776655554
Q ss_pred hhHHHHHHHHHHccCccceeccccCCCcccCCccCC--------------------------------------------
Q 003601 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK-------------------------------------------- 271 (808)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~-------------------------------------------- 271 (808)
.+++.+||.+ .+||||||||.||+|+|.|.++
T Consensus 444 ---~~R~~~mve~-r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g 519 (933)
T COG0060 444 ---KNRFGNMVEN-RPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDG 519 (933)
T ss_pred ---HHHHHHHHcC-CCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCc
Confidence 5678999975 9999999999999999987421
Q ss_pred ------CceEEEEecccchhhhhccCCch-hHhhhcCCCCCcceEEEEeeccc--cchhcHHHHHhhhCCCCcccCcEEE
Q 003601 272 ------EKVFYVWFDAPIGYVSITSCYTN-EWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGTGENWTLMKTIS 342 (808)
Q Consensus 272 ------~~viyVWfDA~~~Yis~~~~~~~-~~~~~w~~p~d~~~vh~~GkDii--~fH~i~~pa~l~a~g~~~~~p~~i~ 342 (808)
.+|++||||+...+.+....... .|..+| +| +++.|.|+. |||+..-.+..+- | .+|.+.++
T Consensus 520 ~~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~---aD---~~lEGsDQ~RGWF~Ssl~~s~a~~-~--~aPYk~vl 590 (933)
T COG0060 520 KEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALF---AD---FYLEGSDQTRGWFYSSLLTSTALF-G--RAPYKNVL 590 (933)
T ss_pred ceeEecCcceEEEEcCCCCcccccCCcccccCcccc---Cc---EEEEeccccchhHHHHHHHHHHHc-C--CchHHHHh
Confidence 17999999999887765431111 122222 26 799999997 7998654443222 2 25789999
Q ss_pred Eeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003601 343 VTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421 (808)
Q Consensus 343 ~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~ 421 (808)
+|||++ -+|+|||||+||+|+|.++++ .||+|+||+|+++ +++..|+.||++.+... ++..++++|.+++.+..+
T Consensus 591 tHGfvlDe~GrKMSKSlGN~v~P~~V~~-~yGADiLRLwv~s-sd~~~dl~~s~~il~~~--~~~~r~irNt~rF~l~nl 666 (933)
T COG0060 591 THGFVLDEKGRKMSKSLGNVVDPQDVID-KYGADILRLWVAS-SDYWEDLRFSDEILKQV--REVYRKIRNTYRFLLGNL 666 (933)
T ss_pred hcccEECCCCCCccccCCCcCCHHHHHH-hhCchheeeeeee-cCchhccccCHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 999976 789999999999999999999 6999999999999 45899999999997654 889999999999888875
Q ss_pred hCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhcchhhcc-CC
Q 003601 422 AKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKLYK-ED 498 (808)
Q Consensus 422 ~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~--~~~N~yi~~~~pw~l~k-~~ 498 (808)
.. |+.........+...+|+|++++++.+..++.++|++|+|+++++.+++|+ ..+|.||+..+...... .+
T Consensus 667 ~~-----fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~ 741 (933)
T COG0060 667 DD-----FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAAD 741 (933)
T ss_pred cC-----CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCC
Confidence 54 443221111123456799999999999999999999999999999999999 35999999988744332 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 499 QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 499 ~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
.....++..++.+++..+..+|+||+|++||+||+.|..+
T Consensus 742 s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~ 781 (933)
T COG0060 742 SPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE 781 (933)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC
Confidence 4455677888999999999999999999999999999765
No 29
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.6e-74 Score=637.88 Aligned_cols=326 Identities=20% Similarity=0.304 Sum_probs=295.7
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---------CCCH-----
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------NCSP----- 87 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~---------g~~p----- 87 (808)
++|+||+|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+..|+++ +++|
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~-~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALN-NTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHH-HHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 47999999999999999999998 67899999999999999999999999999999999875 4554
Q ss_pred --HHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccC
Q 003601 88 --KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (808)
Q Consensus 88 --~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (808)
+++++++++.|+++|++|||++| +|++|+++.|.+.|+++|.+|+++|+||++.++++||+.|+++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 46899999999999999999988 9999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHH
Q 003601 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (808)
Q Consensus 164 p~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (808)
|++||++++.+.++||||+|++++++|++++++++.. .+|++.++.+.
T Consensus 156 -------------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~ 203 (382)
T cd00817 156 -------------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIK-FVPERMEKRYE 203 (382)
T ss_pred -------------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcE-EEChHHHHHHH
Confidence 7789999999999999999999999999999875421 36888999999
Q ss_pred HHHHccCccceeccccCCCcccCCccC----------------------------------CCceEEEEecccchhhhhc
Q 003601 244 AWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------KEKVFYVWFDAPIGYVSIT 289 (808)
Q Consensus 244 ~~l~~gl~d~~ISR~~~WGipvP~~~~----------------------------------~~~viyVWfDA~~~Yis~~ 289 (808)
+||++ ++||||||++.||+|+|.|.+ +++|+||||||+++|++.+
T Consensus 204 ~~l~~-l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~ 282 (382)
T cd00817 204 NWLEN-IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTL 282 (382)
T ss_pred HHHhh-CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHh
Confidence 99998 999999999999999998654 3699999999999999975
Q ss_pred cCCc---hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChh
Q 003601 290 SCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGN 365 (808)
Q Consensus 290 ~~~~---~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~ 365 (808)
+|+ +.|+.|| |+| +|++|+||++||++++.++.+++... .+++.+++|||++ .+|+|||||+||+|++.
T Consensus 283 -~~~~~~~~~~~~~--p~d---~~~~G~D~~~~h~~~~l~~~~~~~g~-~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~ 355 (382)
T cd00817 283 -GWPEETKDLKKFY--PTS---LLVTGHDIIFFWVARMIMRGLKLTGK-LPFKEVYLHGLVRDEDGRKMSKSLGNVIDPL 355 (382)
T ss_pred -CCCCcchhHhhcC--CCC---eeeeecCcCchHHHHHHHHHHHhhCC-CchHHeEeeeeEECCCCCCccccCCCCCCHH
Confidence 564 3588899 567 89999999999999999988877432 2348999999998 79999999999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003601 366 DAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (808)
Q Consensus 366 d~l~~~~~~D~lRy~ll~~~~~~~D~~F 393 (808)
|+++ .||+|++|||+++.++.++|.+|
T Consensus 356 dll~-~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 356 DVID-GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHH-hcCcHHHHHHHHhCCCccCCCCC
Confidence 9999 69999999999999989999987
No 30
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.5e-72 Score=688.77 Aligned_cols=513 Identities=17% Similarity=0.217 Sum_probs=393.5
Q ss_pred CCCCCCCCCC----CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-
Q 003601 9 PAAPPPKLPI----PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED- 83 (808)
Q Consensus 9 ~~~~~~~~~~----~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~- 83 (808)
|++...+.+. .++++|++++|||||||.||||||++. +.+|+++||+||+||+|.|++|||+||+||+..++++
T Consensus 85 W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~-tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~l 163 (1205)
T PTZ00427 85 WKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAG-IIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKEN 163 (1205)
T ss_pred HHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHH-HHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHh
Confidence 4444554432 356779999999999999999999985 5699999999999999999999999999999999863
Q ss_pred CC----------------CHHHHHHHHHHHHHHHHHhcC--ccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeee
Q 003601 84 NC----------------SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145 (808)
Q Consensus 84 g~----------------~p~e~~~~~~~~~~~~~~~lg--I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~ 145 (808)
|+ .|.+++++|.+.+++++++|| +.+|++++|+++.|.+.|+++|.+|+++|+||++.+.++
T Consensus 164 g~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~ 243 (1205)
T PTZ00427 164 NINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMP 243 (1205)
T ss_pred CCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeec
Confidence 32 257889999999999999999 566799999999999999999999999999999999999
Q ss_pred ccCCCCccccccccc-----cc----------------------------------------------------------
Q 003601 146 YCDTCKRFLADRLVE-----GT---------------------------------------------------------- 162 (808)
Q Consensus 146 y~~~~~~~l~d~~v~-----g~---------------------------------------------------------- 162 (808)
||+.|+|.|++.+|. -.
T Consensus 244 wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~ 323 (1205)
T PTZ00427 244 YSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCY 323 (1205)
T ss_pred cCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeecccccccccccccccccccccc
Confidence 999999999998771 00
Q ss_pred -----------CCCC--CCC----CC------------------------------------------------------
Q 003601 163 -----------CPFE--GCN----YE------------------------------------------------------ 171 (808)
Q Consensus 163 -----------cp~~--~c~----~~------------------------------------------------------ 171 (808)
.|++ +|. ..
T Consensus 324 ~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~ 403 (1205)
T PTZ00427 324 AQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYK 403 (1205)
T ss_pred CCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeee
Confidence 0110 000 00
Q ss_pred CcC--------------------------Cc---------------hhhccCC-------CCCc----------------
Q 003601 172 SAR--------------------------GD---------------QCENCGK-------LLNA---------------- 187 (808)
Q Consensus 172 ~~~--------------------------g~---------------~ce~cG~-------~l~~---------------- 187 (808)
.-. |. .|..-|. .+.+
T Consensus 404 pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G 483 (1205)
T PTZ00427 404 PLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQN 483 (1205)
T ss_pred CCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCC
Confidence 000 00 0000111 0000
Q ss_pred -----------------------cc--cCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhH-HHH
Q 003601 188 -----------------------TD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA-IQA 241 (808)
Q Consensus 188 -----------------------~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~ 241 (808)
.+ ..+|+|||||+|++++.++|||++++++++++.+..+...+. |.+. .+.
T Consensus 484 ~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~---P~~~~~~r 560 (1205)
T PTZ00427 484 LYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWI---PAHIKEKK 560 (1205)
T ss_pred CCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEe---CchhhHhH
Confidence 00 136899999999999999999999999999988866554433 3334 468
Q ss_pred HHHHHHccCccceeccccCCCcccCCccCCC-------------------------------------------------
Q 003601 242 THAWLKEGLKVRCITRDLKWGVPVPLERFKE------------------------------------------------- 272 (808)
Q Consensus 242 ~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~------------------------------------------------- 272 (808)
+.+||.+ ++|||||||+.||+|+|.|.+++
T Consensus 561 ~~~wl~n-~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~ 639 (1205)
T PTZ00427 561 FHNWIKD-AKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRI 639 (1205)
T ss_pred HHHHHhc-CccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceeec
Confidence 8999986 89999999999999999775321
Q ss_pred -ceEEEEecccchhhhhccCCc-----hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeee
Q 003601 273 -KVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY 346 (808)
Q Consensus 273 -~viyVWfDA~~~Yis~~~~~~-----~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~ 346 (808)
+|++||||+.+...+. .+|+ ++|+.+| |+| +...|.||+++|-.....+..++... .|++.+++|||
T Consensus 640 ~DVlD~WFdSg~~p~a~-~~~P~~~~~~~f~~~f--PaD---~i~eG~Dq~rgWf~s~l~~s~~l~~~-~PfK~VlvHG~ 712 (1205)
T PTZ00427 640 PEVFDCWFESGSMPYAK-VHYPFSTEKEDFHKIF--PAD---FIAEGLDQTRGWFYTLLVISTLLFDK-APFKNLICNGL 712 (1205)
T ss_pred CceEEEEEeCCCChHHH-hCCCcccchhhHhccC--Cce---EEEEecchhccHHHHHHHHHHHhcCC-CCcceeEEccE
Confidence 2899999998877654 4664 2466677 677 78999999987754433333333322 46799999999
Q ss_pred ee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCC-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCC
Q 003601 347 LN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424 (808)
Q Consensus 347 l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~-~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~ 424 (808)
++ .+|+|||||+||+|+|.++++ .||+|+|||||++.... ++|++|+++.+.+.++ .++++++|.++++...+...
T Consensus 713 Vld~dG~KMSKSlGNvIDP~evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r-~~l~klwN~~rF~~~~i~~~ 790 (1205)
T PTZ00427 713 VLASDGKKMSKRLKNYPDPLYILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVK-SFILPFYHSFRFFSQEVTRY 790 (1205)
T ss_pred EEcCCCCCcccCCCCCCCHHHHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHH-HHHHHHHHHHHHHHhccccc
Confidence 98 599999999999999999999 69999999999987654 7999999999877654 45677888877665533310
Q ss_pred CCCCCC--Cc--CCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhhcchhhccCCh
Q 003601 425 PGQGYG--SI--VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS-EGNAYLQESQFWKLYKEDQ 499 (808)
Q Consensus 425 ~~~~~~--g~--~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~-~~N~yi~~~~pw~l~k~~~ 499 (808)
. ..+ +. .+.........+|+|++++++.+.+.+.++|++|+|+.|++.|++|+. .+|+|++..++......+.
T Consensus 791 ~--~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~ 868 (1205)
T PTZ00427 791 E--CLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGE 868 (1205)
T ss_pred c--ccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCc
Confidence 0 000 11 010000123457999999999999999999999999999999999997 6999999877521111122
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 500 ~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
+...++++++.++|+.+++||+||||++|++||++|+.
T Consensus 869 ~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 869 ENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999963
No 31
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.3e-69 Score=647.79 Aligned_cols=443 Identities=21% Similarity=0.314 Sum_probs=359.1
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (808)
+++||+++||||||.|||||+++ ++.+|+++||+||+|++|+|++|||+||+||+.+|+++|++|.++++++++.|+++
T Consensus 32 ~~~~i~~~pPy~nG~lHiGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 110 (805)
T PRK00390 32 KKYYVLDMFPYPSGGLHMGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQ 110 (805)
T ss_pred CCEEEEccCCCCCCCcchhhhHH-HHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999998 67799999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhh
Q 003601 102 YKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (808)
Q Consensus 102 ~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce 179 (808)
|++||+++| ++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+|+
T Consensus 111 ~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~------------------- 171 (805)
T PRK00390 111 LKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVI------------------- 171 (805)
T ss_pred HHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhh-------------------
Confidence 999999887 68999999999999999999999999999999999999999999998775
Q ss_pred ccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC------------------C----CC-----
Q 003601 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS------------------V----AG----- 232 (808)
Q Consensus 180 ~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~------------------~----~~----- 232 (808)
+++|++||.+++.++++||||++++|+++|.++++... . ++
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~ 239 (805)
T PRK00390 172 ------------DGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSD 239 (805)
T ss_pred ------------CCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCC
Confidence 23578899999999999999999999998888754320 0 00
Q ss_pred ----CCC----------------h--------------------------------------------------------
Q 003601 233 ----SWS----------------Q-------------------------------------------------------- 236 (808)
Q Consensus 233 ----~~~----------------~-------------------------------------------------------- 236 (808)
.|. .
T Consensus 240 ~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi 319 (805)
T PRK00390 240 EKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPV 319 (805)
T ss_pred CEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeE
Confidence 000 0
Q ss_pred ------------------------------------------------------------------------hHHHHHHH
Q 003601 237 ------------------------------------------------------------------------NAIQATHA 244 (808)
Q Consensus 237 ------------------------------------------------------------------------~~~~~~~~ 244 (808)
.+++.+.+
T Consensus 320 ~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~ 399 (805)
T PRK00390 320 WIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIA 399 (805)
T ss_pred EEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHH
Confidence 00011111
Q ss_pred HHHc----------cCccceeccccCCCcccCCccC--------------------------------------------
Q 003601 245 WLKE----------GLKVRCITRDLKWGVPVPLERF-------------------------------------------- 270 (808)
Q Consensus 245 ~l~~----------gl~d~~ISR~~~WGipvP~~~~-------------------------------------------- 270 (808)
.|.+ .++||||||||+||+|||.|.+
T Consensus 400 ~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (805)
T PRK00390 400 WLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKC 479 (805)
T ss_pred HHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCcccc
Confidence 2211 2569999999999999996542
Q ss_pred ------CCceEEEEecccchhhhhccC-----C--chhHhhhcCCCCCcceEEEEeeccccchh---cHHHHHhhhCCC-
Q 003601 271 ------KEKVFYVWFDAPIGYVSITSC-----Y--TNEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLLGTGE- 333 (808)
Q Consensus 271 ------~~~viyVWfDA~~~Yis~~~~-----~--~~~~~~~w~~p~d~~~vh~~GkDii~fH~---i~~pa~l~a~g~- 333 (808)
+.+||++|||+.+-|+..+-. . .+.++.|+ |.| +++.|.|++..|. .+|.+.|...+.
T Consensus 480 g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~--P~D---ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~ 554 (805)
T PRK00390 480 GKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWL--PVD---QYIGGIEHAVLHLLYARFFTKVLRDLGLV 554 (805)
T ss_pred CCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcC--CCc---EEeccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 226899999997655543211 0 12455555 678 8999999874443 355555655442
Q ss_pred -CcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 003601 334 -NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412 (808)
Q Consensus 334 -~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~N 412 (808)
...|++.+++|||+ |||||+||+|+|.++++ .||+|++|||++..+++++|++|+.+.+.+. ..++++++|
T Consensus 555 ~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~-~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~--~~~l~kl~~ 626 (805)
T PRK00390 555 SSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIE-KYGADTARLFEMFAGPPEKDLEWSDSGVEGA--YRFLQRVWR 626 (805)
T ss_pred cCCcchhhheecCcE-----EeCCCCCCCCCHHHHHH-HcChHHHHHHHHhcCCccCCcccCHHHHHHH--HHHHHHHHH
Confidence 12467999999999 99999999999999999 6999999999998889999999999999876 567888888
Q ss_pred HHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcch
Q 003601 413 FINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFW 492 (808)
Q Consensus 413 l~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw 492 (808)
++++.... .++ .. .....+|++++++++.+.+++.++|++|+|+.|++.+++|+...++|.+
T Consensus 627 ~~~~~~~~--------~~~-~~----~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~----- 688 (805)
T PRK00390 627 LVVDAKGE--------AGA-LD----VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAED----- 688 (805)
T ss_pred HHHHhhhc--------ccc-cC----cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-----
Confidence 88763211 111 11 1123478999999999999999999999999999999999988888761
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 493 KLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 493 ~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
.....++.++++.++.||+|||||+||+||+.|+.
T Consensus 689 ----------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~ 723 (805)
T PRK00390 689 ----------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH 723 (805)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 11234567788999999999999999999999974
No 32
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=4.2e-69 Score=647.79 Aligned_cols=450 Identities=19% Similarity=0.299 Sum_probs=364.6
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~ 98 (808)
.++++|||+++||||||.|||||+++ ++.+|+++||+||+||+|+|++|||+||+||+.+|.++|++|.++++++++.|
T Consensus 26 ~~k~k~~v~~~pPy~nG~lHiGH~~~-~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~ 104 (842)
T TIGR00396 26 SNKPKYYILDMFPYPSGALHMGHVRN-YTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANM 104 (842)
T ss_pred CCCCCEEEEcCCCCCCCccccchhHH-HHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46778999999999999999999998 67799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCc
Q 003601 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (808)
Q Consensus 99 ~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (808)
+++|++||+++| ++++|+++.|.+.+|++|.+|+++|+||++.+.++||+.|+++|++.+|..
T Consensus 105 ~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~--------------- 169 (842)
T TIGR00396 105 KKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDS--------------- 169 (842)
T ss_pred HHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhh---------------
Confidence 999999999886 689999999999999999999999999999999999999999999988731
Q ss_pred hhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhH------------------
Q 003601 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA------------------ 238 (808)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~------------------ 238 (808)
+++|++||.+++.++.+||||++++|+++|.++++.... ||.++
T Consensus 170 ---------------~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~---wp~~v~~~q~~wig~s~g~~i~f 231 (842)
T TIGR00396 170 ---------------DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDH---WPESVKEMQRNWIGKSEGVEITF 231 (842)
T ss_pred ---------------cCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhcc---ccHHHHHHHHhcccccceEEEEE
Confidence 135889999999999999999999999988886543320 11000
Q ss_pred --------------------------------------------------------------------------------
Q 003601 239 -------------------------------------------------------------------------------- 238 (808)
Q Consensus 239 -------------------------------------------------------------------------------- 238 (808)
T Consensus 232 ~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~ 311 (842)
T TIGR00396 232 KIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLT 311 (842)
T ss_pred EcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCC
Confidence
Q ss_pred ------------------------------------------------------------------------------HH
Q 003601 239 ------------------------------------------------------------------------------IQ 240 (808)
Q Consensus 239 ------------------------------------------------------------------------------~~ 240 (808)
++
T Consensus 312 ~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~ 391 (842)
T TIGR00396 312 GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEARE 391 (842)
T ss_pred CCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecchhcCCCCHHHHHH
Confidence 00
Q ss_pred HHHHHHH----------ccCccceeccccCCCcccCCccCC---------------------------------------
Q 003601 241 ATHAWLK----------EGLKVRCITRDLKWGVPVPLERFK--------------------------------------- 271 (808)
Q Consensus 241 ~~~~~l~----------~gl~d~~ISR~~~WGipvP~~~~~--------------------------------------- 271 (808)
.+.++|. -.|+||||||||+||+|||.|.++
T Consensus 392 ~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~ 471 (842)
T TIGR00396 392 AIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNV 471 (842)
T ss_pred HHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcC
Confidence 1111111 136799999999999999985421
Q ss_pred ------------CceEEEEecccchhhhhcc----CCc---hhHhhhcCCCCCcceEEEEeeccccchh---cHHHHHhh
Q 003601 272 ------------EKVFYVWFDAPIGYVSITS----CYT---NEWEQWWKNPENVELYQFMGKDNVPFHT---VMFPSTLL 329 (808)
Q Consensus 272 ------------~~viyVWfDA~~~Yis~~~----~~~---~~~~~~w~~p~d~~~vh~~GkDii~fH~---i~~pa~l~ 329 (808)
.+||++|||+.+.|+..+- .++ +.++ +|. |.| +++.|.||+..|. -+|-.+|.
T Consensus 472 ~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~-~~~-PvD---~yi~G~dhailHLlyaRf~~~~l~ 546 (842)
T TIGR00396 472 TCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAE-YWL-PVD---LYIGGAEHAILHLLYARFWHKFLY 546 (842)
T ss_pred cCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHh-ccC-CCc---EeeccHHHHHHHHHHHHHHHHHHH
Confidence 2578999999876664221 111 2344 454 788 8999999875543 34666665
Q ss_pred hCCC--CcccCcEEEEeeeeec-----CCC---------------------------ccccccCCccChhhhhhcCCCch
Q 003601 330 GTGE--NWTLMKTISVTEYLNY-----ESG---------------------------KFSKSKGIGVFGNDAKDTNIPVE 375 (808)
Q Consensus 330 a~g~--~~~~p~~i~~hg~l~~-----~G~---------------------------KMSKS~GN~I~~~d~l~~~~~~D 375 (808)
..++ .-.|++.+++|||++- +|+ |||||+||+|+|.++++ .||+|
T Consensus 547 ~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~-~ygaD 625 (842)
T TIGR00396 547 DIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK-KHGAD 625 (842)
T ss_pred hccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH-HcCch
Confidence 4442 1246799999999975 788 99999999999999999 69999
Q ss_pred hHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHH
Q 003601 376 VWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKY 455 (808)
Q Consensus 376 ~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~ 455 (808)
++|||++..+++++|++|+.+.+... ..++++|+|+++++...+.. +. .++. ......|+|++.+++.+
T Consensus 626 alRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-----~~-~~~~---~~l~~~d~~il~~l~~~ 694 (842)
T TIGR00396 626 ALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-----KT-YLTP---TILEEAQKELRRDVHKF 694 (842)
T ss_pred HHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-----cc-cCCc---ccCCHHHHHHHHHHHHH
Confidence 99999998788899999999999876 67889999999876544322 11 0111 11235789999999999
Q ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 003601 456 VEQYLEAMEKVK-LKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQ 534 (808)
Q Consensus 456 ~~~v~~~~~~~~-~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~ 534 (808)
++++.++|++|+ |+.|++.+++|+....+|.. . .++.+++..+.+||+||+||+||+||+.
T Consensus 695 i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~---------------~---~~l~~~l~~ll~lLaPf~PhiaEElW~~ 756 (842)
T TIGR00396 695 LKKVTEDLEKLESFNTAISAMMILLNALYKAKK---------------D---ALYLEYLKGFLTVLSPFAPHLAEELWEK 756 (842)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh---------------H---HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999988 99999999999875554311 0 2466788999999999999999999999
Q ss_pred cCC
Q 003601 535 LNL 537 (808)
Q Consensus 535 Lg~ 537 (808)
||.
T Consensus 757 l~~ 759 (842)
T TIGR00396 757 LGS 759 (842)
T ss_pred hCC
Confidence 984
No 33
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.4e-69 Score=646.37 Aligned_cols=451 Identities=18% Similarity=0.304 Sum_probs=353.9
Q ss_pred CCCCcEEEEeCCCCCCCc-CcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003601 19 PGKRNILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~-lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~ 97 (808)
.++++|||++++|||||. |||||+++ ++.+|+++||+||+||+|+|++|||+||+||+.+|.+.|++|+++++++++.
T Consensus 107 ~~k~k~~v~~~~PYpnG~~lHiGH~~~-y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~ 185 (963)
T PLN02563 107 TSKPKFYVLDMFPYPSGAGLHVGHPEG-YTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185 (963)
T ss_pred CCCCCEEEEeCCCCCCCcccchhhHHH-HHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHH
Confidence 467789999999999997 99999998 5779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCC
Q 003601 98 HKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARG 175 (808)
Q Consensus 98 ~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g 175 (808)
|+++|++||+++| ++++|+++.|.+.+|++|.+|+++|+||++...++||+.|+++|++.+|
T Consensus 186 ~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev---------------- 249 (963)
T PLN02563 186 FRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV---------------- 249 (963)
T ss_pred HHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHh----------------
Confidence 9999999999987 7999999999999999999999999999999999999999999997554
Q ss_pred chhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC--------------------------
Q 003601 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-------------------------- 229 (808)
Q Consensus 176 ~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-------------------------- 229 (808)
++++|++||.+++.++..||||++++|+++|+++++...
T Consensus 250 ---------------~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~ 314 (963)
T PLN02563 250 ---------------VDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVL 314 (963)
T ss_pred ---------------hcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEec
Confidence 456799999999999999999999999999998863210
Q ss_pred --------C-CCCCC----------------hh--H------------HHH-----------------------------
Q 003601 230 --------V-AGSWS----------------QN--A------------IQA----------------------------- 241 (808)
Q Consensus 230 --------~-~~~~~----------------~~--~------------~~~----------------------------- 241 (808)
. ...|. .. + ...
T Consensus 315 ~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~ 394 (963)
T PLN02563 315 DGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAI 394 (963)
T ss_pred CccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEe
Confidence 0 00010 00 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 003601 242 -------------------------------------------------------------------------------- 241 (808)
Q Consensus 242 -------------------------------------------------------------------------------- 241 (808)
T Consensus 395 ~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~ 474 (963)
T PLN02563 395 NPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDI 474 (963)
T ss_pred ccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEecCCCccccc
Confidence
Q ss_pred -----------HHHHHHc----------cCccceeccccCCCcccCCccCC-----------------------------
Q 003601 242 -----------THAWLKE----------GLKVRCITRDLKWGVPVPLERFK----------------------------- 271 (808)
Q Consensus 242 -----------~~~~l~~----------gl~d~~ISR~~~WGipvP~~~~~----------------------------- 271 (808)
+.++|.+ .|+||||||||+||+|||.+.++
T Consensus 475 ~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g 554 (963)
T PLN02563 475 NGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTG 554 (963)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCC
Confidence 0011110 16799999999999999976431
Q ss_pred -------------------------CceEEEEecccchhhhhccC------CchhHhhhcCCCCCcceEEEEeeccccch
Q 003601 272 -------------------------EKVFYVWFDAPIGYVSITSC------YTNEWEQWWKNPENVELYQFMGKDNVPFH 320 (808)
Q Consensus 272 -------------------------~~viyVWfDA~~~Yis~~~~------~~~~~~~~w~~p~d~~~vh~~GkDii~fH 320 (808)
.+||++||++.+-|+..+-. +..+..++|. |+| +++.|.||.-.|
T Consensus 555 ~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~-PvD---~yigG~dhailH 630 (963)
T PLN02563 555 EPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWM-PVD---LYVGGAEHAVLH 630 (963)
T ss_pred CCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcC-CCc---EeeccHHHHhhH
Confidence 14678899887776653210 1112334676 788 899999996555
Q ss_pred ---hcHHHHHhhhCCC--CcccCcEEEEeeeee----------cCCC---------------------------------
Q 003601 321 ---TVMFPSTLLGTGE--NWTLMKTISVTEYLN----------YESG--------------------------------- 352 (808)
Q Consensus 321 ---~i~~pa~l~a~g~--~~~~p~~i~~hg~l~----------~~G~--------------------------------- 352 (808)
+-+|-..|...|. ...|++.++.|||++ .+|+
T Consensus 631 LlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (963)
T PLN02563 631 LLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLK 710 (963)
T ss_pred hHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccc
Confidence 4455555554442 124789999999986 4566
Q ss_pred ------------ccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003601 353 ------------KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSF 420 (808)
Q Consensus 353 ------------KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~ 420 (808)
|||||+||+|+|.++++ .||+|+||||++..+|..+|.+|+.+.+... ..++++++|++......
T Consensus 711 ~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~--~rfL~rlwn~~~~~~~~ 787 (963)
T PLN02563 711 DDPSIRLIARAHKMSKSRGNVVNPDDVVS-EYGADSLRLYEMFMGPLRDSKTWSTSGVEGV--HRFLGRTWRLVVGAPLP 787 (963)
T ss_pred cCCcccccccccccccccCCcCCHHHHHH-HcCcHHHHHHHHhCCCcccccccCHHHHHHH--HHHHHHHHHHHHHhhhc
Confidence 99999999999999999 6999999999999899899999998888765 34566666665432100
Q ss_pred HhCCCCCCCC-CcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhhccCCh
Q 003601 421 IAKPPGQGYG-SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499 (808)
Q Consensus 421 ~~k~~~~~~~-g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~ 499 (808)
.. .+. +.++ .....|++++.+++.+++++.++|++|+|+.|++.+|+|+...++ |. .
T Consensus 788 -~~----~~~~~~~~-----~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~-------~~-----~ 845 (963)
T PLN02563 788 -DG----SFRDGTVV-----TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK-------WD-----K 845 (963)
T ss_pred -cc----ccCccccc-----cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-------ch-----H
Confidence 00 111 1111 111246788999999999999999999999999999999876542 31 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 500 ~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
...++++.+++||+|||||+||+||++||.+
T Consensus 846 --------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~ 876 (963)
T PLN02563 846 --------VPREAIEPFVLLLSPYAPHLAEELWFRLGHS 876 (963)
T ss_pred --------HHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC
Confidence 1246788899999999999999999999853
No 34
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.6e-66 Score=626.94 Aligned_cols=461 Identities=19% Similarity=0.274 Sum_probs=364.3
Q ss_pred CcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---------------CC---------CHHHHHH
Q 003601 37 PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------NC---------SPKEICD 92 (808)
Q Consensus 37 lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~---------------g~---------~p~e~~~ 92 (808)
|||||+++ ++.+|+++||+||+||+|.|.+|||+||+||+..|++. |+ +|.++++
T Consensus 1 lHiGH~~~-~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRT-YTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHH-HHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 79999998 46699999999999999999999999999999998642 43 5778999
Q ss_pred HHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccc-cC------
Q 003601 93 KYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG-TC------ 163 (808)
Q Consensus 93 ~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g-~c------ 163 (808)
+|...++++|++||++.| +-+.|++|.|.+.|+++|.+|+++|+||++.+.+.|||.|++.|+|.++.. .-
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~ 159 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEY 159 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceE
Confidence 999999999999999887 667899999999999999999999999999999999999999999987742 11
Q ss_pred -------------------CCC--CC---------C----------------------CC-------------C------
Q 003601 164 -------------------PFE--GC---------N----------------------YE-------------S------ 172 (808)
Q Consensus 164 -------------------p~~--~c---------~----------------------~~-------------~------ 172 (808)
|.+ || . +. +
T Consensus 160 ~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~ 239 (897)
T PRK12300 160 TLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKV 239 (897)
T ss_pred EEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEE
Confidence 110 00 0 00 0
Q ss_pred -------------------cCCc----------------------------------hh---------------------
Q 003601 173 -------------------ARGD----------------------------------QC--------------------- 178 (808)
Q Consensus 173 -------------------~~g~----------------------------------~c--------------------- 178 (808)
..|. .|
T Consensus 240 ~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 240 KNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred ECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 0000 00
Q ss_pred --h---------------ccCCCCCc-----------------------------ccc-CCCccccCCCCcEEee-ccce
Q 003601 179 --E---------------NCGKLLNA-----------------------------TDL-KDPKCKVCRNAPQIRD-TNHL 210 (808)
Q Consensus 179 --e---------------~cG~~l~~-----------------------------~el-~~p~c~~~g~~~~~~~-~~~~ 210 (808)
+ .-|++.+. .++ ..|+|+|||++++++. ++||
T Consensus 320 ~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QW 399 (897)
T PRK12300 320 QEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQW 399 (897)
T ss_pred ccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCce
Confidence 0 01211110 011 1378899999999986 5999
Q ss_pred eEecc--chHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCc------cCCCceEEEEeccc
Q 003601 211 FLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE------RFKEKVFYVWFDAP 282 (808)
Q Consensus 211 f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~------~~~~~viyVWfDA~ 282 (808)
|++++ .+++++.+++++..+ +|+..++.+.+||.. ++|||||||+.||+|+|.+ ...+.++|+|+++.
T Consensus 400 Fi~~~~~~~k~~~~~~~~~~~~---~P~~~~~~~~~~l~~-l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i 475 (897)
T PRK12300 400 FIDYSDPEWKELAHKALDNMEI---IPEEYRKEFENTIDW-LKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTI 475 (897)
T ss_pred EEEcCcHHHHHHHHHHHccCEE---ECHHHHHHHHHHHhh-hhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHH
Confidence 99997 799999999987654 566777889999985 9999999999999999952 13467899999988
Q ss_pred chhhhhc------------------c----------CCc--------hhHhhhcCCCCCcceEEEEeeccccchhcHHHH
Q 003601 283 IGYVSIT------------------S----------CYT--------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPS 326 (808)
Q Consensus 283 ~~Yis~~------------------~----------~~~--------~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa 326 (808)
..|+... . +++ ++|+.|| |.| +|++|+||++||..+| .
T Consensus 476 ~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~--P~D---~~~~GkDii~~Hl~~~-~ 549 (897)
T PRK12300 476 AHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWY--PVD---WRHSGKDLIPNHLTFF-I 549 (897)
T ss_pred HHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccC--Cce---EEEeeeccCccHHHHH-H
Confidence 8776531 0 011 1355456 567 8999999999999999 4
Q ss_pred HhhhCCCC-cccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHH
Q 003601 327 TLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (808)
Q Consensus 327 ~l~a~g~~-~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~ 405 (808)
++.++..+ .+.|+.+++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.+++++|.+|+++.+... .+
T Consensus 550 ~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~-~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~--~~ 626 (897)
T PRK12300 550 FNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIE-EYGADVVRLYLTSSAELLQDADWREKEVESV--RR 626 (897)
T ss_pred HHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHH-HcChHHHHHHHHhCCCCCCCCccCHHHHHHH--HH
Confidence 44444322 24679999999999999999999999999999999 6999999999999889999999999987765 33
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHH
Q 003601 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM-SISSEGNA 484 (808)
Q Consensus 406 l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~-~l~~~~N~ 484 (808)
+++++.|+++++.. .. +. ......|+|++++++.+.+++.++|++|+|+.|++.++ .+...+|+
T Consensus 627 ~l~r~~~~~~~~~~-----------~~-~~---~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~ 691 (897)
T PRK12300 627 QLERFYELAKELIE-----------IG-GE---EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRW 691 (897)
T ss_pred HHHHHHHHHHHHhc-----------CC-Cc---cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 45555555544321 11 11 11235689999999999999999999999999998886 67788999
Q ss_pred HHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
|++..+| .++.++.++++.+++||+|||||+|++||+.||.+
T Consensus 692 Yi~~~k~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 692 YLRRVGE------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred HHHhcch------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 9987664 34567889999999999999999999999999854
No 35
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=6.2e-66 Score=564.33 Aligned_cols=303 Identities=22% Similarity=0.401 Sum_probs=272.1
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CCCH-------------
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSP------------- 87 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~~p------------- 87 (808)
++|+|.+|||||||.+||||+++. +.+|+++||+|++|++|.|++|+|+||+||+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~-~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNK-ILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHH-HHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 469999999999999999999984 6699999999999999999999999999999999987 8764
Q ss_pred ---HHHHHHHHHHHHHHHHhcCc--cccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccccccc
Q 003601 88 ---KEICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (808)
Q Consensus 88 ---~e~~~~~~~~~~~~~~~lgI--~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (808)
+++++++++.|++++++||| .+|.+++|+++.|.+.++++|.+|+++|+||++.+.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 79999999999999999999 556899999999999999999999999999999998887
Q ss_pred CCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHH
Q 003601 163 CPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQAT 242 (808)
Q Consensus 163 cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (808)
+++.++++||||+|+++++.+.+++++... +|.+.++.+
T Consensus 144 --------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~---~P~~~~~~~ 182 (338)
T cd00818 144 --------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKVNW---IPEWVKNRF 182 (338)
T ss_pred --------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCcE---ECHHHHHHH
Confidence 246789999999999999999999987431 478888899
Q ss_pred HHHHHccCccceeccccCCCcccCCccCC----------CceEEEEecccchhhhhccCCc---hhHhhhcCCCCCcceE
Q 003601 243 HAWLKEGLKVRCITRDLKWGVPVPLERFK----------EKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELY 309 (808)
Q Consensus 243 ~~~l~~gl~d~~ISR~~~WGipvP~~~~~----------~~viyVWfDA~~~Yis~~~~~~---~~~~~~w~~p~d~~~v 309 (808)
.+|+++ |+||||||++.||+|+|.|.++ ++|+||||||+++|++.. +++ .+|+.|| |.| +
T Consensus 183 ~~~l~~-l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~-~~~~~~~~~~~~~--p~d---~ 255 (338)
T cd00818 183 GNWLEN-RRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL-HYPFENEDFEELF--PAD---F 255 (338)
T ss_pred HHHHhc-chhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc-CCCCcchhhhccC--CCe---E
Confidence 999975 9999999999999999987654 789999999999999875 554 3588889 456 7
Q ss_pred EEEeecccc--chhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCC
Q 003601 310 QFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (808)
Q Consensus 310 h~~GkDii~--fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~ 386 (808)
+++|+||++ ||+++||++++ .+. .+|+.+++|||++ .+|+|||||+||+|++.|+++ .||+|++||||++.++
T Consensus 256 ~~~GkDii~~wf~~~~~~~~~~-~~~--~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~-~~~~D~~R~~l~~~~~ 331 (338)
T cd00818 256 ILEGSDQTRGWFYSLLLLSTAL-FGK--APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD-KYGADALRLWVASSDV 331 (338)
T ss_pred EeecchHHhHHHHHHHHHHHHh-cCC--CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH-HcCcHHHHHHHHhCCC
Confidence 999999995 99999999874 343 4679999999987 589999999999999999999 6999999999999999
Q ss_pred CCCCccc
Q 003601 387 EVSDTLF 393 (808)
Q Consensus 387 ~~~D~~F 393 (808)
.++|++|
T Consensus 332 ~~~d~~~ 338 (338)
T cd00818 332 YAEDLRF 338 (338)
T ss_pred ccCCCCC
Confidence 9999876
No 36
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.2e-62 Score=600.85 Aligned_cols=479 Identities=17% Similarity=0.215 Sum_probs=351.5
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-------CCC-------
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCS------- 86 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-------g~~------- 86 (808)
+++|+||.|+||+||.|||||+++. +.+|+++||+||+|++|+|.+|||+||+||+..|++. |..
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~-t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSL-SKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHH-HHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 4679999999999999999999985 5699999999999999999999999999999998652 321
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHHhcC
Q 003601 87 ------------------------------------------------------------PKEICDKYHVIHKDVYKWFD 106 (808)
Q Consensus 87 ------------------------------------------------------------p~e~~~~~~~~~~~~~~~lg 106 (808)
|..+++.+...++++|++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 22355556678899999999
Q ss_pred cccc--ccCCCCC--hHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccc---------------------
Q 003601 107 ISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG--------------------- 161 (808)
Q Consensus 107 I~~D--~f~rT~~--~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g--------------------- 161 (808)
++.| +-+.|++ |.|..+|++.|.+|+++|+||++.+.+.|||.|++.++|.+++.
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~ 282 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFP 282 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcch
Confidence 9876 5667887 99999999999999999999999999999999999999974421
Q ss_pred -----------------cCCCC-----CC---------------C--------------C--------------------
Q 003601 162 -----------------TCPFE-----GC---------------N--------------Y-------------------- 170 (808)
Q Consensus 162 -----------------~cp~~-----~c---------------~--------------~-------------------- 170 (808)
+-|.+ .| + +
T Consensus 283 ~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~ 362 (1084)
T PLN02959 283 GKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYD 362 (1084)
T ss_pred hhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHH
Confidence 00110 00 0 0
Q ss_pred -------------CC-------------------------------------------cCCc--------------hhhc
Q 003601 171 -------------ES-------------------------------------------ARGD--------------QCEN 180 (808)
Q Consensus 171 -------------~~-------------------------------------------~~g~--------------~ce~ 180 (808)
+. .||- ..+.
T Consensus 363 L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g 442 (1084)
T PLN02959 363 LIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPE 442 (1084)
T ss_pred hCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCC
Confidence 00 0000 0000
Q ss_pred c-------------------------------------CCC----CCc-----------------c------ccCCCccc
Q 003601 181 C-------------------------------------GKL----LNA-----------------T------DLKDPKCK 196 (808)
Q Consensus 181 c-------------------------------------G~~----l~~-----------------~------el~~p~c~ 196 (808)
+ |.+ +.. . +-..|+|+
T Consensus 443 ~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~ 522 (1084)
T PLN02959 443 FGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMS 522 (1084)
T ss_pred CCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEE
Confidence 1 100 000 0 11247899
Q ss_pred cCCCCcEEeeccceeEecc--chHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCcc-----
Q 003601 197 VCRNAPQIRDTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER----- 269 (808)
Q Consensus 197 ~~g~~~~~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~----- 269 (808)
|||++++++.++|||++++ .+++.+.+.+++... .|+..++.+.+||.. ++|||||||+.||+|+|.+.
T Consensus 523 R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~---~P~~~~~~~~~wl~~-l~DWciSRQr~wGtpIPWd~~~~ie 598 (1084)
T PLN02959 523 RSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNL---YSDETRHGFEHTLGW-LNQWACSRSFGLGTRIPWDEQFLIE 598 (1084)
T ss_pred CCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEE---ECHHHHHHHHHHHhC-CCceeecccccCCCcCCcccceeec
Confidence 9999999999999999997 799999999977654 356677788999975 99999999999999999310
Q ss_pred -----------C------------------------CCceEEEEecccchhhhhccCCc--------hhHhhhcCCCCCc
Q 003601 270 -----------F------------------------KEKVFYVWFDAPIGYVSITSCYT--------NEWEQWWKNPENV 306 (808)
Q Consensus 270 -----------~------------------------~~~viyVWfDA~~~Yis~~~~~~--------~~~~~~w~~p~d~ 306 (808)
. ...|+++||++.....+. +|+ .+++.|+ |.|
T Consensus 599 slsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t--~~p~~~l~~~r~ef~~~y--P~D- 673 (1084)
T PLN02959 599 SLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS--DIPAELLEKMKQEFEYWY--PFD- 673 (1084)
T ss_pred cCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc--CCCHHHHhhhhHHHHhhC--CCe-
Confidence 0 135899999985433221 333 2455445 678
Q ss_pred ceEEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCC
Q 003601 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (808)
Q Consensus 307 ~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~ 386 (808)
+++.|+||+++|..+...+..++....+.|+.+++|||++.+|+|||||+||+|+|.++++ .||+|++||||+..++
T Consensus 674 --l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~-kyGADalRl~la~~~~ 750 (1084)
T PLN02959 674 --LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIE-EFSADATRFALADAGD 750 (1084)
T ss_pred --EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHH-HhCchHHHHHHhhcCC
Confidence 8999999999997664433333322335678999999999999999999999999999999 6999999999999888
Q ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 003601 387 EVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKV 466 (808)
Q Consensus 387 ~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~ 466 (808)
..+|.+|+++.+... ...+.|++..+...+.. ...+. +. ......|+|++++++.++.++.++|++|
T Consensus 751 ~~~D~nF~~k~~n~~-----~~~l~n~~~~~~~~~~~--~~~~~---~~---~~~~~~D~wils~l~~~i~~v~~a~e~y 817 (1084)
T PLN02959 751 GVDDANFVFETANAA-----ILRLTKEIAWMEEVLAA--ESSLR---TG---PPSTYADRVFENEINIAIAETEKNYEAM 817 (1084)
T ss_pred ccCCCCccHHHHHHH-----HHHHHHHHHHHHHhhhh--hcccC---Cc---ccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 889999999876432 22334433322222111 00111 11 1124578999999999999999999999
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHc
Q 003601 467 KLKQGLKTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (808)
Q Consensus 467 ~~~~al~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (808)
+|+.|++..+ +|...-.+|... .+... ....++..++..+.+||+|||||+||+||+.|
T Consensus 818 ~f~~A~~~~~Yel~~~k~~yr~~-------~~~~~---~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 818 MFREALKSGFYDLQAARDEYRLS-------CGSGG---MNRDLVWRFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred cHHHHHHHHHHHHHHhHHHHhhc-------cccch---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 9999999643 232222233211 01111 23456778889999999999999999999999
No 37
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2.6e-63 Score=540.29 Aligned_cols=294 Identities=28% Similarity=0.463 Sum_probs=268.5
Q ss_pred cEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC-------------CHHH
Q 003601 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC-------------SPKE 89 (808)
Q Consensus 23 ~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~-------------~p~e 89 (808)
+|+|++|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|++++. +|++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~-~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALT-HIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHH-HHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 5899999999999999999997 6789999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCC
Q 003601 90 ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167 (808)
Q Consensus 90 ~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~ 167 (808)
+|+++++.|+++|++|||++| .+++|+++.|.+.|+++|.+|+++|+||++.+.+
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHH
Q 003601 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLK 247 (808)
Q Consensus 168 c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (808)
+.+++|||+++++++++.+++++.+ .++++.++.+.+||.
T Consensus 137 -------------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~---~~p~~~~~~~~~~l~ 176 (312)
T cd00668 137 -------------------------------------RITEQWFFDMPKFKEKLLKALRRGK---IVPEHVKNRMEAWLE 176 (312)
T ss_pred -------------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC---cCChHHHHHHHHHHh
Confidence 4567899999999999999998765 367778889999999
Q ss_pred ccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCc--hhHhhhcCCCCCcceEEEEeeccccchhcHHH
Q 003601 248 EGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT--NEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (808)
Q Consensus 248 ~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~--~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~p 325 (808)
+++ ||||||+++||+|+| +++|||||||+++|++.+.... ..++.|| |.| +|++|+||++||+++|+
T Consensus 177 ~~~-d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~--~~d---i~~~G~D~~~~h~~~~~ 245 (312)
T cd00668 177 SLL-DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSY--PAD---WHLIGKDILRGWANFWI 245 (312)
T ss_pred CCC-CeEEeccCCCCCcCC-----cccccchhhccHHHHHHcCCCccchhhhhcC--Cce---EEEEecchhhhHHHHHH
Confidence 877 999999999999999 5699999999999998763222 2477788 456 99999999999999999
Q ss_pred HHhhhCCCCcccCcEEEEeeeeecCC-CccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003601 326 STLLGTGENWTLMKTISVTEYLNYES-GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (808)
Q Consensus 326 a~l~a~g~~~~~p~~i~~hg~l~~~G-~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~F 393 (808)
|++.+++.. .+|+.+++|||++.+| +|||||+||+|++.|+++ .|++|++||||++..++++|.+|
T Consensus 246 ~~~~~~~~~-~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~-~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 246 TMLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE-KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHhcCC-CCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-HcCcHHHHHHHHhcCCccCCCCC
Confidence 999998753 4788999999999887 999999999999999999 59999999999999999999887
No 38
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-62 Score=567.10 Aligned_cols=461 Identities=19% Similarity=0.311 Sum_probs=365.6
Q ss_pred CCCCCCCCCCC--CC-CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC
Q 003601 9 PAAPPPKLPIP--GK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (808)
Q Consensus 9 ~~~~~~~~~~~--~~-~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~ 85 (808)
|++...|.+.. ++ ++|||+.+.|||||.+||||+|+ |..+||++||+||+||+|+|.+|||..|+|++..|.+.|.
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~-Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~ 96 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCcccc-ccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCC
Confidence 56677777532 33 59999999999999999999998 5669999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccC
Q 003601 86 SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (808)
Q Consensus 86 ~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (808)
+|..+++++++.++++|++||.++| +-+.|+||+|.+++|++|.+|+++|+||+++..+.|||.|++.|++.+|.
T Consensus 97 ~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~--- 173 (814)
T COG0495 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI--- 173 (814)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceee---
Confidence 9999999999999999999999987 66789999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHH
Q 003601 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (808)
Q Consensus 164 p~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (808)
+..|||||.+|+.++-.||||++++|.++|++-+..... .||+.++.+.+
T Consensus 174 ----------------------------~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~--~wPE~Vk~mq~ 223 (814)
T COG0495 174 ----------------------------DGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLAT--LWPETVKGMQR 223 (814)
T ss_pred ----------------------------cCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhcc--CCchhHHHHHH
Confidence 345899999999999999999999999999887665321 37877777777
Q ss_pred HHHH----------------------------------------------------------------------------
Q 003601 244 AWLK---------------------------------------------------------------------------- 247 (808)
Q Consensus 244 ~~l~---------------------------------------------------------------------------- 247 (808)
+||.
T Consensus 224 nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~ 303 (814)
T COG0495 224 NWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAH 303 (814)
T ss_pred cCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeecc
Confidence 7720
Q ss_pred ------------------------------------------------------------------c-------------
Q 003601 248 ------------------------------------------------------------------E------------- 248 (808)
Q Consensus 248 ------------------------------------------------------------------~------------- 248 (808)
+
T Consensus 304 ~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~l 383 (814)
T COG0495 304 AEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVL 383 (814)
T ss_pred CCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceE
Confidence 0
Q ss_pred ----------------------------------cCccceeccccCCCcccCCccCC-----------------------
Q 003601 249 ----------------------------------GLKVRCITRDLKWGVPVPLERFK----------------------- 271 (808)
Q Consensus 249 ----------------------------------gl~d~~ISR~~~WGipvP~~~~~----------------------- 271 (808)
+|+||.+|||++||.|+|.-+++
T Consensus 384 inS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~ 463 (814)
T COG0495 384 INSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGL 463 (814)
T ss_pred eccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccC
Confidence 24689999999999999964322
Q ss_pred -------------------------CceEEEEecccchhhhhcc-------CCchhHhhhcCCCCCcceEEEEeeccccc
Q 003601 272 -------------------------EKVFYVWFDAPIGYVSITS-------CYTNEWEQWWKNPENVELYQFMGKDNVPF 319 (808)
Q Consensus 272 -------------------------~~viyVWfDA~~~Yis~~~-------~~~~~~~~~w~~p~d~~~vh~~GkDii~f 319 (808)
..||..|+++.+-|+..+- ....+--+||. |.| ++++|+||+..
T Consensus 464 gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~-PVD---~yigG~ehavl 539 (814)
T COG0495 464 GTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWY-PVD---LYIGGIEHAVL 539 (814)
T ss_pred CCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhccc-Chh---eeecchhHHHH
Confidence 1566677777755543210 01112334776 788 89999999988
Q ss_pred hhc---HHHHHhhhCCCC--cccCcEEEEeeeeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003601 320 HTV---MFPSTLLGTGEN--WTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (808)
Q Consensus 320 H~i---~~pa~l~a~g~~--~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~F 393 (808)
|-. +|...|...|+= -.|+++++++||++. +|+|||||+||+|+|+++++ .||+|++|+|++..+|..+|++|
T Consensus 540 HLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-~yGADt~Rl~~m~~ap~~~d~~W 618 (814)
T COG0495 540 HLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-KYGADTVRLYIMFAAPPEQDLEW 618 (814)
T ss_pred HHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHH-HhCchHHHHHHHhhCChhhCCCC
Confidence 855 455555555540 024566999999998 79999999999999999999 69999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHH
Q 003601 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK-VKLKQGL 472 (808)
Q Consensus 394 s~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~-~~~~~al 472 (808)
+.+.+... ..+++.+++++.+..... ...........++++ ++.+.+.+.+.++. +.++.++
T Consensus 619 ~e~gv~g~--~rfL~r~~~l~~~~~~~~------------~~~~~~~~~~~~~~~---~h~~~~~v~~~~e~~~~~nt~i 681 (814)
T COG0495 619 SESGVEGA--RRFLQRVWNLVKEHLEKL------------VEELTKEQGKEDRWL---LHRTIKKVTEDFEARQTFNTAI 681 (814)
T ss_pred ChhhhHHH--HHHHHHHHHHHHHhhhcc------------cccccchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 344555555555433211 000001111234444 45566777777877 8899999
Q ss_pred HHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 473 KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 473 ~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
..+|+|++...+|..... .+. .++.+++..+..||+||+||+|+++|+.||.+
T Consensus 682 ~~~m~l~N~l~~~~~~~~------~~~-------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~ 734 (814)
T COG0495 682 AALMELLNALRKYLRRTE------GDR-------KVLREALETWVRLLAPFAPHIAEELWEELGNE 734 (814)
T ss_pred HHHHHHHHHHHHHHhccc------chH-------HHHHHHHHHHHHHhcccccHHHHHHHHHhcCC
Confidence 999999999998876533 111 34567788899999999999999999999953
No 39
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-62 Score=533.72 Aligned_cols=293 Identities=24% Similarity=0.428 Sum_probs=265.4
Q ss_pred cEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003601 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (808)
Q Consensus 23 ~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 102 (808)
+|+||+|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++++++.|++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~-~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRT-YTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCCccccchHH-HHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999997 688999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhc
Q 003601 103 KWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (808)
Q Consensus 103 ~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (808)
++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------------- 126 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------------- 126 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee---------------------------------
Confidence 99999998 5789999999999999999999999999999999997
Q ss_pred cCCCCCccccCCCccccCCCCcEEeeccceeEec--cchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccc
Q 003601 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (808)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (808)
+.++||||++ ++|++.+.++++++. .|+++.++.+.+|+. |||+
T Consensus 127 ------------------------~~~~~~f~~l~~~~~~~~l~~~l~~~~---~~p~~~~~~~~~~l~-------isR~ 172 (314)
T cd00812 127 ------------------------KLLDQWFLKYSETEWKEKLLKDLEKLD---GWPEEVRAMQENWIG-------CSRQ 172 (314)
T ss_pred ------------------------CccceEEEEcCcHHHHHHHHHHHHhcC---cCCHHHHHHHHHHhe-------eeee
Confidence 1367999999 999999999998764 389999999999995 9999
Q ss_pred cCCCcccCCccCCCceEEEEecccc---hhhhhccC-C---------chhHhhhcCCCCCcceEEEEeeccccchh---c
Q 003601 259 LKWGVPVPLERFKEKVFYVWFDAPI---GYVSITSC-Y---------TNEWEQWWKNPENVELYQFMGKDNVPFHT---V 322 (808)
Q Consensus 259 ~~WGipvP~~~~~~~viyVWfDA~~---~Yis~~~~-~---------~~~~~~~w~~p~d~~~vh~~GkDii~fH~---i 322 (808)
+.||+|+|+ ++++|||+|+++ +|+++... . .+.|+.|| |.| +|++|+||++||+ +
T Consensus 173 ~~wGipvP~----~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~--p~d---i~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 173 RYWGTPIPW----TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWY--PVD---IYIGGKEHAPNHLLYSR 243 (314)
T ss_pred cCCcCCcCc----ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhC--CCe---eeecchhHHHHHHHHHH
Confidence 999999996 689999999997 77765421 1 12466677 556 8999999999997 8
Q ss_pred HHHHHhhhCCC-CcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCH
Q 003601 323 MFPSTLLGTGE-NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (808)
Q Consensus 323 ~~pa~l~a~g~-~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~ 395 (808)
+|+++|.++|+ ...+|+++++||||+++|+|||||+||+|++.|+++ .+++|++||||++.++ .|.+|+|
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~-~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIK-KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHH-HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 99999999985 013688999999999999999999999999999999 5999999999999877 8899875
No 40
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-58 Score=506.23 Aligned_cols=486 Identities=19% Similarity=0.275 Sum_probs=383.0
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHH-HHHHHc------CCCHHH--
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATE-TKAMED------NCSPKE-- 89 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~-~~A~~~------g~~p~e-- 89 (808)
.++..|.+.+ +||.||||||++. |..||+.||+-+.|..++|++|||+||.||+ .+|.+. .++|.|
T Consensus 56 ~q~~~f~L~d----anG~lhlghalnk-ILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR 130 (937)
T KOG0433|consen 56 QQRVEFELKD----ANGNLHLGHALNK-ILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIR 130 (937)
T ss_pred ccCceEEEec----cCCCccchHHHHH-HHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHH
Confidence 3555677777 9999999999996 6699999999999999999999999999999 566542 346654
Q ss_pred -----HHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccccccc
Q 003601 90 -----ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (808)
Q Consensus 90 -----~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (808)
+|+..++.+++.|.++||..| .-|-|.+|.|.....++|.+|+++|+||++..+++|+++..+.|++++++..
T Consensus 131 ~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn 210 (937)
T KOG0433|consen 131 AKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYN 210 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCC
Confidence 677888999999999999877 5678999999999999999999999999999999999999999999988731
Q ss_pred --------------------------------------CCCC--------------------------------------
Q 003601 163 --------------------------------------CPFE-------------------------------------- 166 (808)
Q Consensus 163 --------------------------------------cp~~-------------------------------------- 166 (808)
.|++
T Consensus 211 ~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~ 290 (937)
T KOG0433|consen 211 DNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEE 290 (937)
T ss_pred cCCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhh
Confidence 1210
Q ss_pred ---------------------CCCCC---------------------------------------------------CcC
Q 003601 167 ---------------------GCNYE---------------------------------------------------SAR 174 (808)
Q Consensus 167 ---------------------~c~~~---------------------------------------------------~~~ 174 (808)
+|.+. +.+
T Consensus 291 fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~ 370 (937)
T KOG0433|consen 291 FEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSR 370 (937)
T ss_pred hhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCC
Confidence 01000 000
Q ss_pred CchhhccCCCCCcc------------------------ccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCC
Q 003601 175 GDQCENCGKLLNAT------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSV 230 (808)
Q Consensus 175 g~~ce~cG~~l~~~------------------------el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~ 230 (808)
|.+..+.|..++.. ...+|+.||++.|+++|.++|||+++..++....+.+++...
T Consensus 371 G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~ 450 (937)
T KOG0433|consen 371 GCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKV 450 (937)
T ss_pred CceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhcee
Confidence 11111112111111 113699999999999999999999999999999999998764
Q ss_pred CCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccC----------------------------------------
Q 003601 231 AGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF---------------------------------------- 270 (808)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~---------------------------------------- 270 (808)
. |.+..+.+..++. +.++||||||+.||+|||.-..
T Consensus 451 ~---P~~~~~rl~~~~~-~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~ 526 (937)
T KOG0433|consen 451 A---PGDSDLRLKQLVT-TRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEE 526 (937)
T ss_pred C---CcchHHHHHHHHc-CCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHh
Confidence 3 4455567777876 4899999999999999995310
Q ss_pred --------------CCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccc--cchhcHHHHHhhhCCCC
Q 003601 271 --------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGTGEN 334 (808)
Q Consensus 271 --------------~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii--~fH~i~~pa~l~a~g~~ 334 (808)
..++++||||+...+-+.. +...+. .+| +++.|.|+. ||.+.+-... |...
T Consensus 527 ~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~-~~~~~~------~aD---v~LEG~DQ~rGWFQSsLLTsv--A~q~- 593 (937)
T KOG0433|consen 527 EVREIPDIASEYKKGTDIMDVWFDSGSSWSAVL-DNEREH------VAD---VYLEGVDQFRGWFQSSLLTSV--AVQN- 593 (937)
T ss_pred hhcccchhHHHhccCCceeeeEecCCCcceeec-CCCCCc------cee---eEEecchhcchHHHHHHHHHH--HHhc-
Confidence 0278999999877765443 111000 244 899999996 6777543221 2222
Q ss_pred cccCcEEEEeeeee-cCCCccccccCCccChhhhhhcC------CCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHH
Q 003601 335 WTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTN------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELL 407 (808)
Q Consensus 335 ~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~------~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~ 407 (808)
..|.+.+++|||.. .+|.|||||+||||+|+.+++ + ||+|+||||.+. +....|+.....-+.+. .+-+
T Consensus 594 kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~-G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l 669 (937)
T KOG0433|consen 594 KAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTD-GSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKL 669 (937)
T ss_pred cCCchheeeeeeEecCCccchhhcccCcCCHHHHhC-CcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHH
Confidence 25789999999965 789999999999999999998 7 999999999995 67789999999999987 7888
Q ss_pred HHHHHHHHHHHHhHhCCCCCCCCCc---CCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HH
Q 003601 408 NNLGNFINRVLSFIAKPPGQGYGSI---VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS--EG 482 (808)
Q Consensus 408 ~~l~Nl~~R~~~~~~k~~~~~~~g~---~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~--~~ 482 (808)
.++.|.++.+++-++. +++. +|- .+..-+|++++.++.++..+++++|++|+|++++..+..|.. .+
T Consensus 670 ~K~R~T~RfllGnl~d-----~~~~~~~~p~---~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lS 741 (937)
T KOG0433|consen 670 IKFRNTFRFLLGNLQD-----FDGKQVKFPL---KDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLS 741 (937)
T ss_pred HHHHhHHHHHhhcccc-----cCCccccccc---hhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 8999999998887776 3332 332 123346899999999999999999999999999999999886 48
Q ss_pred HHHHHhhcchhhcc-CChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 483 NAYLQESQFWKLYK-EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 483 N~yi~~~~pw~l~k-~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
|.|++..+...... .+....+++..++.+++..++..++||+|++++++|+.|-+.
T Consensus 742 a~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 742 AFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 99999999865543 244566778888899999999999999999999999999743
No 41
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-58 Score=520.12 Aligned_cols=502 Identities=18% Similarity=0.252 Sum_probs=394.0
Q ss_pred CCCCCCCCCC---CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc----
Q 003601 11 APPPKLPIPG---KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---- 83 (808)
Q Consensus 11 ~~~~~~~~~~---~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~---- 83 (808)
+.+.|.|..+ ...|.++.|||.|+|.+|||||.+.+| .|+++||.||.||.|.|++|+|+.|..++.-.++.
T Consensus 61 k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~ai-qD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~ 139 (995)
T KOG0432|consen 61 KQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAI-QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLARE 139 (995)
T ss_pred HcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHH-HHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHh
Confidence 3445555444 457899999999999999999998765 99999999999999999999999999887666542
Q ss_pred -CCC------------HHHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccC
Q 003601 84 -NCS------------PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (808)
Q Consensus 84 -g~~------------p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (808)
|++ ..++-+++...+.+++++||.++| +-..|+|+...+.|.+.|.+|++.|+||++.+.+.||+
T Consensus 140 ~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~ 219 (995)
T KOG0432|consen 140 GGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCP 219 (995)
T ss_pred cCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeech
Confidence 232 234566788899999999999887 56679999999999999999999999999999999999
Q ss_pred CCCccccccccccc--------------------------------C---------CCC------------CCCCCC---
Q 003601 149 TCKRFLADRLVEGT--------------------------------C---------PFE------------GCNYES--- 172 (808)
Q Consensus 149 ~~~~~l~d~~v~g~--------------------------------c---------p~~------------~c~~~~--- 172 (808)
...+.++|-+|+.. | |.+ .+.|+.
T Consensus 220 ~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhG 299 (995)
T KOG0432|consen 220 ALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHG 299 (995)
T ss_pred hHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccC
Confidence 99999999887621 1 000 011100
Q ss_pred -------------------------------------------------------cCCchhhccCCC-------------
Q 003601 173 -------------------------------------------------------ARGDQCENCGKL------------- 184 (808)
Q Consensus 173 -------------------------------------------------------~~g~~ce~cG~~------------- 184 (808)
..|..-..||-.
T Consensus 300 k~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv 379 (995)
T KOG0432|consen 300 KFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVV 379 (995)
T ss_pred ceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHH
Confidence 012222234410
Q ss_pred -----------CCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccc
Q 003601 185 -----------LNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVR 253 (808)
Q Consensus 185 -----------l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~ 253 (808)
..+..++-|.|.|+|+.+|..-.+|||++.+....+..+-+++.... ..|+........|+.+ .+||
T Consensus 380 ~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~-i~P~~~~k~w~~W~~~-i~DW 457 (995)
T KOG0432|consen 380 EKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLE-ILPEFHEKEWYRWLEN-IRDW 457 (995)
T ss_pred HHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeE-ECchHHHHHHHHHHhh-cccc
Confidence 11223456899999999999999999999999999999988865432 2455666677889976 9999
Q ss_pred eeccccCCCcccCCccC---------------------------------------CCceEEEEecccchhhhhccCCch
Q 003601 254 CITRDLKWGVPVPLERF---------------------------------------KEKVFYVWFDAPIGYVSITSCYTN 294 (808)
Q Consensus 254 ~ISR~~~WGipvP~~~~---------------------------------------~~~viyVWfDA~~~Yis~~~~~~~ 294 (808)
|||||+.||..||.+.. +.+|+++||.+.+-.++. .||++
T Consensus 458 CiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~-lGWP~ 536 (995)
T KOG0432|consen 458 CISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFST-LGWPE 536 (995)
T ss_pred chhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchh-cCCcc
Confidence 99999999999997421 127999999998888886 49985
Q ss_pred ---hHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCC---cccCcEEEEeeeee-cCCCccccccCCccChhhh
Q 003601 295 ---EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDA 367 (808)
Q Consensus 295 ---~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~---~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~ 367 (808)
++..|+| .+ +.-.|.||++|+. |=+..+|.. -.|++.|+.||++. -.|+|||||+||||+|.|+
T Consensus 537 ~t~d~~~fyP--~s---llETG~DILfFWV----aRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDV 607 (995)
T KOG0432|consen 537 ETKDFKNFYP--LS---LLETGHDILFFWV----ARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDV 607 (995)
T ss_pred ccccHHhcCC--ch---hhhcCchHHHHHH----HHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHHHH
Confidence 6888874 44 5668999999954 433333321 24789999999997 7899999999999999999
Q ss_pred hhcC------------------------------C-------CchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q 003601 368 KDTN------------------------------I-------PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNL 410 (808)
Q Consensus 368 l~~~------------------------------~-------~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l 410 (808)
++ + | |.|+|||.|++....++|++++...+... ..++|+|
T Consensus 608 I~-Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~--r~FcNKl 684 (995)
T KOG0432|consen 608 ID-GISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGY--RHFCNKL 684 (995)
T ss_pred hc-cccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhH--HHHHHHH
Confidence 86 2 3 89999999999888899999999998864 7899999
Q ss_pred HHHHHHHHHhHhCCCCCCCCCcCCCCC---CcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHH
Q 003601 411 GNFINRVLSFIAKPPGQGYGSIVPDAN---GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAY 485 (808)
Q Consensus 411 ~Nl~~R~~~~~~k~~~~~~~g~~p~~~---~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~--~~~N~y 485 (808)
+|+.++++..+.+ + .+|... .....-.|.|++++|+..++.+.+.|+.|+|..|...+..|. ..|.-|
T Consensus 685 WNa~rF~l~~lg~----~---~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVY 757 (995)
T KOG0432|consen 685 WNATRFALQRLGE----N---FVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVY 757 (995)
T ss_pred HHHHHHHHHhccc----C---CCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876443 2 233211 111112789999999999999999999999999999999887 469999
Q ss_pred HHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcC
Q 003601 486 LQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (808)
Q Consensus 486 i~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg 536 (808)
++..+|-.- ..+......+..++..++.....||+||||+++++||++|-
T Consensus 758 lE~~Kp~l~-~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 758 LEATKPLLW-GDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred HHHhhHHhc-CCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 999998432 22334555667778888888999999999999999999973
No 42
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=3.2e-58 Score=539.28 Aligned_cols=364 Identities=23% Similarity=0.363 Sum_probs=272.2
Q ss_pred CCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CC-----------
Q 003601 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC----------- 85 (808)
Q Consensus 18 ~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~----------- 85 (808)
..++++|+|++||||+||.|||||+++. +..|+++||+||+|++|+|++|||+||+||+.++++. |.
T Consensus 19 ~~~~~~f~i~~~PPy~nG~lH~GH~~~~-~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~ 97 (601)
T PF00133_consen 19 NKNKPKFFIHDPPPYANGDLHIGHALNK-TIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGR 97 (601)
T ss_dssp TTTSGEEEEEE---BTSSS-BHHHHHHH-HHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTH
T ss_pred CCCCCcEEEEeCCCCCCCcccHHHHHHH-HHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhccccccccccccc
Confidence 3567889999999999999999999995 5599999999999999999999999999999999875 33
Q ss_pred -----CHHHHHHHHHHHHHHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccc
Q 003601 86 -----SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (808)
Q Consensus 86 -----~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (808)
.+.++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++.+.++||+.|++.|+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~E 177 (601)
T PF00133_consen 98 EEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHE 177 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGG
T ss_pred ccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhh
Confidence 3668899999999999999999876 678899999999999999999999999999999999999999999998
Q ss_pred cccc--------------------------CCCC--CC----CCCC----------------------------------
Q 003601 159 VEGT--------------------------CPFE--GC----NYES---------------------------------- 172 (808)
Q Consensus 159 v~g~--------------------------cp~~--~c----~~~~---------------------------------- 172 (808)
|+.. -|.+ ++ -..+
T Consensus 178 v~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 257 (601)
T PF00133_consen 178 VEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGK 257 (601)
T ss_dssp EEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECH
T ss_pred cccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcc
Confidence 8621 1110 00 0000
Q ss_pred --------------------------cCCc---------------------------------hhhccCC----------
Q 003601 173 --------------------------ARGD---------------------------------QCENCGK---------- 183 (808)
Q Consensus 173 --------------------------~~g~---------------------------------~ce~cG~---------- 183 (808)
..|. ..+.+|.
T Consensus 258 ~L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar 337 (601)
T PF00133_consen 258 ELVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEAR 337 (601)
T ss_dssp HHTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHH
T ss_pred eecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeecc
Confidence 0011 1111111
Q ss_pred ------------CCCccc--cCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHcc
Q 003601 184 ------------LLNATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEG 249 (808)
Q Consensus 184 ------------~l~~~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g 249 (808)
++...+ ...|+|||||++++.+.++|||++++++++++.+.+++....|.+ .++.+.+||..
T Consensus 338 ~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~---~~~~~~~~i~~- 413 (601)
T PF00133_consen 338 EKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES---YRKRFENWIDN- 413 (601)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST---CHHHHHHHHHT-
T ss_pred HHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc---chhhhhhhccc-
Confidence 000001 124789999999999999999999999999999999987765544 45678899986
Q ss_pred CccceeccccCCCcccCCccCC----------------------------------------------CceEEEEecccc
Q 003601 250 LKVRCITRDLKWGVPVPLERFK----------------------------------------------EKVFYVWFDAPI 283 (808)
Q Consensus 250 l~d~~ISR~~~WGipvP~~~~~----------------------------------------------~~viyVWfDA~~ 283 (808)
++|||||||+.||+|+|.|.++ .+|+++|||+.+
T Consensus 414 l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~ 493 (601)
T PF00133_consen 414 LRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGL 493 (601)
T ss_dssp --EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCT
T ss_pred cccchhhccCCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeeccccccccC
Confidence 8999999999999999986321 269999999988
Q ss_pred hhhhhccCCc----hhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCcccccc
Q 003601 284 GYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSK 358 (808)
Q Consensus 284 ~Yis~~~~~~----~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~ 358 (808)
.+++.. +++ .+++.|+ |.| +.+.|+||+++|..+......++... .+++.+++|||++ .+|+|||||+
T Consensus 494 ~~~~~~-~~~~~~~~~~~~~~--P~D---~~~~G~D~~~~W~~~~l~~~~~l~~~-~pfk~v~~hG~vld~~G~KMSKS~ 566 (601)
T PF00133_consen 494 WPFAVL-GWPENDREEFEYWY--PVD---LYIEGKDQIRGWFQSSLFLSVALFGK-EPFKKVITHGFVLDEDGRKMSKSK 566 (601)
T ss_dssp CHHHHT-TSTTCSCHHHHHHS--SBS---EEEEEGGGTTTHHHHHHHHHHHHSSS-TSBSEEEEE--EEETTSSB-BTTT
T ss_pred Cccccc-ccccccchhccccC--Ccc---cccCCccchhhHHHHhHhhccccccC-CchheeeecccccccceeecccCC
Confidence 776653 444 3566665 678 78999999999876554443343322 4679999999987 6899999999
Q ss_pred CCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccC
Q 003601 359 GIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (808)
Q Consensus 359 GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs 394 (808)
||+|+|.++++ .||+|++|+|++..++..+|++||
T Consensus 567 GNvi~p~~ii~-~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 567 GNVIDPEDIIE-KYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp TB--BHHHHHH-HT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred CcccCHHHHHH-HhCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999 699999999999778889999997
No 43
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-57 Score=491.45 Aligned_cols=457 Identities=21% Similarity=0.279 Sum_probs=364.6
Q ss_pred CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (808)
Q Consensus 19 ~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~ 98 (808)
.++++ ||.+..|||+|.|||||.|.+ ..+|+++||+||+||+|++.+|||..|+|.|.+|.+.|++|+.++..+++.+
T Consensus 55 ~sk~K-YiLsMFPYPSG~LHiGHvRVY-TIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 55 KSKKK-YILSMFPYPSGALHIGHVRVY-TISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred cCCCc-eEEEecCCCCCcccccceEEE-EehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 45556 999999999999999999975 4599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccc--ccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCc
Q 003601 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (808)
Q Consensus 99 ~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (808)
++++.+|||+|| +.+.|.+|+|.+..|++|.+|+++|++|+.+.++.|||.+.|.|++.+|..
T Consensus 133 k~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~--------------- 197 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDA--------------- 197 (876)
T ss_pred HHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcc---------------
Confidence 999999999986 789999999999999999999999999999999999999999999987742
Q ss_pred hhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHH---------
Q 003601 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLK--------- 247 (808)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--------- 247 (808)
++++||+|.+++.+.-.|||+++++|.++|++.++.. +.|+. ++++.++||.
T Consensus 198 ---------------~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L---~~W~~-vk~mQrnWIG~~~G~el~F 258 (876)
T KOG0435|consen 198 ---------------DGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETL---PEWPE-VKDMQRNWIGRCDGAELMF 258 (876)
T ss_pred ---------------cCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhh---hhhhh-HHHHHHhhcccccceEEEE
Confidence 2458999999999999999999999999999999865 45887 7778888820
Q ss_pred --------------------------------------------------------------------------------
Q 003601 248 -------------------------------------------------------------------------------- 247 (808)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (808)
T Consensus 259 ~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v 338 (876)
T KOG0435|consen 259 PLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYV 338 (876)
T ss_pred EeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechh
Confidence
Q ss_pred ------------------------------------------------------------------------------cc
Q 003601 248 ------------------------------------------------------------------------------EG 249 (808)
Q Consensus 248 ------------------------------------------------------------------------------~g 249 (808)
..
T Consensus 339 ~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~k 418 (876)
T KOG0435|consen 339 LDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYK 418 (876)
T ss_pred ccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecch
Confidence 13
Q ss_pred CccceeccccCCCcccCCccC--------------------------------------------------CCceEEEEe
Q 003601 250 LKVRCITRDLKWGVPVPLERF--------------------------------------------------KEKVFYVWF 279 (808)
Q Consensus 250 l~d~~ISR~~~WGipvP~~~~--------------------------------------------------~~~viyVWf 279 (808)
|+||-||||++||.|||.-+| +.+|+++|+
T Consensus 419 LkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFv 498 (876)
T KOG0435|consen 419 LKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFV 498 (876)
T ss_pred hhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhh
Confidence 679999999999999996432 238999999
Q ss_pred cccchhhhhccC------CchhHhhhcCCCCCcceEEEEeeccccchhc---HHHHHhhhCCCC--cccCcEEEEeeee-
Q 003601 280 DAPIGYVSITSC------YTNEWEQWWKNPENVELYQFMGKDNVPFHTV---MFPSTLLGTGEN--WTLMKTISVTEYL- 347 (808)
Q Consensus 280 DA~~~Yis~~~~------~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i---~~pa~l~a~g~~--~~~p~~i~~hg~l- 347 (808)
|+.+-|+..+-. +.....++|. |.| |+++|++|.-.|-. +|.-+|...|.- -.|+++++..|++
T Consensus 499 DSsWYYlRylDpkN~e~~~d~a~a~k~M-PVD---vYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~ 574 (876)
T KOG0435|consen 499 DSSWYYLRYLDPKNPEEPFDKAKAKKNM-PVD---VYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVR 574 (876)
T ss_pred ccceeeEeecCCCCcccccchhhhhccC-cee---EEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhccc
Confidence 999999865311 1224567787 788 89999999765543 555666665531 1244444444433
Q ss_pred -----------------------------ec-CC-------CccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCC
Q 003601 348 -----------------------------NY-ES-------GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (808)
Q Consensus 348 -----------------------------~~-~G-------~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D 390 (808)
.. ++ +|||||++|+|+|.+++. .||+|.+|+|++..+|...+
T Consensus 575 G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~-~yG~D~tRl~ilf~ap~~~~ 653 (876)
T KOG0435|consen 575 GKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL-EYGVDTTRLYILFAAPPRDP 653 (876)
T ss_pred ceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-HhCchHHHHHHHhhCCcccc
Confidence 11 11 599999999999999999 69999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCC--CCcCChHHHHHHHHHHHHHHHHHHHHHH-hcc
Q 003601 391 TLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDA--NGAESHQLTKTLAEKVGKYVEQYLEAME-KVK 467 (808)
Q Consensus 391 ~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~--~~~~~~~~d~~l~~~l~~~~~~v~~~~~-~~~ 467 (808)
++++.+.+... ..+...+++++.++...-. +|..++. .........+.+.+..+.++.++.++++ .+.
T Consensus 654 ~nW~es~i~Gi--~rwl~riw~l~~~~~~ar~-------~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~s 724 (876)
T KOG0435|consen 654 INWNESAIPGI--KRWLQRIWALVSQILQARD-------DGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFS 724 (876)
T ss_pred cccccccchhH--HHHHHHHHHHHHHHHHHHh-------cCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999998876 4567777888777665421 1222211 1112233466889999999999999996 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCC
Q 003601 468 LKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 468 ~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (808)
++.|+..+|.|.....+-.....-| ++ ....++..+.++|+|+.||.|+++|..|+.+
T Consensus 725 lNtaIS~~m~ltN~l~~a~k~~~~h-----~~--------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876)
T KOG0435|consen 725 LNTAISDMMGLTNALKKALKIVLVH-----SP--------EFERALEALVIMLAPFAPHVASELWSALAND 782 (876)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc-----Ch--------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc
Confidence 9999999999887543332221111 11 1223456788899999999999999999953
No 44
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-52 Score=458.22 Aligned_cols=501 Identities=20% Similarity=0.289 Sum_probs=379.5
Q ss_pred CCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH-cCC-----------
Q 003601 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-DNC----------- 85 (808)
Q Consensus 18 ~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~-~g~----------- 85 (808)
..++++|.+.++||+++|-||-||+...+| .|++.||..+.||.|---.|||+||+|++-...+ .|+
T Consensus 34 sk~rp~ftFyDGPPFATGlPHyGHiLa~TI-KDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI 112 (1070)
T KOG0434|consen 34 SKGRPKFTFYDGPPFATGLPHYGHILASTI-KDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGI 112 (1070)
T ss_pred hCCCCceeeccCCccccCCCccchhhhhhH-HHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhH
Confidence 457889999999999999999999998877 9999999999999999999999999999966544 344
Q ss_pred -----CHHHHHHHHHHHHHHHHHhcC--ccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccc
Q 003601 86 -----SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (808)
Q Consensus 86 -----~p~e~~~~~~~~~~~~~~~lg--I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (808)
.++.++-+|+.+++....+|| |+||+=|+|..|.+++.|+++|++|+++|++|++.....|+..|.+.|+.-+
T Consensus 113 ~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFE 192 (1070)
T KOG0434|consen 113 DKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFE 192 (1070)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchh
Confidence 466788999999999999999 7888888999999999999999999999999999999999999999887632
Q ss_pred cc----------------------------ccCCCC------CC------------------------------------
Q 003601 159 VE----------------------------GTCPFE------GC------------------------------------ 168 (808)
Q Consensus 159 v~----------------------------g~cp~~------~c------------------------------------ 168 (808)
-. .|.|++ .|
T Consensus 193 a~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~ 272 (1070)
T KOG0434|consen 193 AQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKND 272 (1070)
T ss_pred cccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccc
Confidence 11 012220 00
Q ss_pred ----------------CCC------------C-----------------------cCC----chhhc-------------
Q 003601 169 ----------------NYE------------S-----------------------ARG----DQCEN------------- 180 (808)
Q Consensus 169 ----------------~~~------------~-----------------------~~g----~~ce~------------- 180 (808)
.|+ . ++| +.|-.
T Consensus 273 ~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp 352 (1070)
T KOG0434|consen 273 NYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP 352 (1070)
T ss_pred cHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCc
Confidence 000 0 000 01110
Q ss_pred --------------------------------cCCCCCccc--cCCCccccCCCCcEEeeccceeEeccchHHHHHHHHH
Q 003601 181 --------------------------------CGKLLNATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (808)
Q Consensus 181 --------------------------------cG~~l~~~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (808)
.|+++.... ..+|.||||.+|+.++..++||++.....++|++...
T Consensus 353 VDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~ 432 (1070)
T KOG0434|consen 353 VDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM 432 (1070)
T ss_pred cccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhccc
Confidence 011111111 1479999999999999999999999988888877655
Q ss_pred cCCCCCCCChh-H-HHHHHHHHHccCccceeccccCCCcccCCccCCC--------------------------------
Q 003601 227 NMSVAGSWSQN-A-IQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE-------------------------------- 272 (808)
Q Consensus 227 ~~~~~~~~~~~-~-~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~-------------------------------- 272 (808)
... |-+. + -+++.+||++ .+||+|||++.||.|+|.|-.++
T Consensus 433 ~t~----WVP~~ikeKRF~NWL~n-ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~i 507 (1070)
T KOG0434|consen 433 KTH----WVPQNIKEKRFANWLKN-ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHI 507 (1070)
T ss_pred ccc----cCChhhhHHHHHHHHhh-hhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCce
Confidence 543 5433 2 2457899987 89999999999999999983211
Q ss_pred ---------------ceEEEEecccchhhhhccCCc----hhHhhhcCCCCCcceEEEEeeccc--cchhcHHHHHhhhC
Q 003601 273 ---------------KVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGT 331 (808)
Q Consensus 273 ---------------~viyVWfDA~~~Yis~~~~~~----~~~~~~w~~p~d~~~vh~~GkDii--~fH~i~~pa~l~a~ 331 (808)
.|+++||++.....+. ..|| ..|+.-+ |+| ..-.|-|+. ||++..-.+.++
T Consensus 508 tIps~~gkg~l~Rv~eVfDCWFESGSMPYAq-~HyPFenk~~fe~~f--Pad---FIaEGlDQTRGWFYTL~VlsT~L-- 579 (1070)
T KOG0434|consen 508 TIPSKKGKGVLHRVSEVFDCWFESGSMPYAQ-RHYPFENKEEFEENF--PAD---FIAEGLDQTRGWFYTLLVLSTAL-- 579 (1070)
T ss_pred ecccCCCCcceehhhhHhhhhhccCCCcchh-hcCCccchHHHhhcC--chH---hhhhccccccchhhHHHHHHHHH--
Confidence 5889999986654432 2454 3466666 556 344688887 677654333222
Q ss_pred CCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCC-CCCCcccCHHHHHHHHHHHHHHH
Q 003601 332 GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP-EVSDTLFTWADLQAKSNNELLNN 409 (808)
Q Consensus 332 g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~-~~~D~~Fs~~~l~~~~n~~l~~~ 409 (808)
...+++++++++|.++ .||+|||||+.|.-+|..+++ .||+|+||+||..... ....+.|..+.+.+.+. ++.--
T Consensus 580 -F~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin-kYGADalRlYLInSPVvraE~LkFkeeGVrevvk-~v~lP 656 (1070)
T KOG0434|consen 580 -FGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN-KYGADALRLYLINSPVVRAENLKFKEEGVREVVK-DVLLP 656 (1070)
T ss_pred -cCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH-hhcchheeeeeecCccccccccccchhhHHHHHH-hhhhh
Confidence 2235889999999987 789999999999999999999 6999999999997432 35788999999988764 44445
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCc--CCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHH
Q 003601 410 LGNFINRVLSFIAKPPGQGYGSI--VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNAYL 486 (808)
Q Consensus 410 l~Nl~~R~~~~~~k~~~~~~~g~--~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~-~N~yi 486 (808)
+.|.+++...-..... .-.|. +++......+-+|+|+.+..+.++.-+++.|++|++..++-.+..|+.. .|+|+
T Consensus 657 W~NsyrF~~qn~~~~~--~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYi 734 (1070)
T KOG0434|consen 657 WYNSYRFLVQNAALLK--KETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYI 734 (1070)
T ss_pred hhHHHHHHHHHHHHhc--cccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhhe
Confidence 6676666554332210 01111 1111112345589999999999999999999999999999999999975 89999
Q ss_pred HhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 487 ~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
.-++-..........+..+|.++.++|..+.++++||.|+++|.||+.|..
T Consensus 735 R~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 735 RFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred ehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 776532211133466888999999999999999999999999999999974
No 45
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=7.9e-52 Score=482.27 Aligned_cols=404 Identities=15% Similarity=0.149 Sum_probs=298.7
Q ss_pred CCCCCCCCCCCCCCC-cEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHH-HCCCceeEecCcchhhHHHHHHHHHcCC
Q 003601 8 NPAAPPPKLPIPGKR-NILITSALPYVNNVPHLGNIIGSVLSADVFARFCR-LRGYNAIYICGTDEYGTATETKAMEDNC 85 (808)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r-~~G~~V~~v~G~D~hG~~i~~~A~~~g~ 85 (808)
++..++.|.|..+.+ ++|||+|++| +.+||||||+ ||.+|+++||+| +.||+|.|++|+||||+||+.+|+++|+
T Consensus 46 lt~~k~~f~p~~~~~v~~Y~CGPTvY--d~~HiGhart-~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~ 122 (651)
T PTZ00399 46 LTGGKVEFVPQNGRQVRWYTCGPTVY--DSSHLGHART-YVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKL 122 (651)
T ss_pred CCCCccccccCCCCeeEEEEeCCCcc--CCcccccchH-HHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCC
Confidence 456777788865544 7898886666 9999999997 788999999999 8999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCC
Q 003601 86 S-PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCP 164 (808)
Q Consensus 86 ~-p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp 164 (808)
+ +.++|++|.+.|.++|++|||.++.+++++ .+|...+++++++|+++|++|.+.+.+||+++
T Consensus 123 ~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~--------------- 186 (651)
T PTZ00399 123 SIFLELARKWEKEFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVE--------------- 186 (651)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEch---------------
Confidence 9 999999999999999999999987766665 58999999999999999999987666666554
Q ss_pred CCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHH
Q 003601 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHA 244 (808)
Q Consensus 165 ~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (808)
+|.+. ..+|.... |.+..+....
T Consensus 187 ---------------------------------------------------~f~~~-~~~Yg~L~-----p~~~~~~~~~ 209 (651)
T PTZ00399 187 ---------------------------------------------------AFRKA-GHVYPKLE-----PESVADEDRI 209 (651)
T ss_pred ---------------------------------------------------hcccc-hhhHHhhC-----hhhcCCHHHH
Confidence 33222 11221110 0000011111
Q ss_pred HHHcc-Cccce-eccc-cC---CCcccCCccCCCceEEEEecccchhhhhccCCc----hhHhhhcCCCCCcceEEEEee
Q 003601 245 WLKEG-LKVRC-ITRD-LK---WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGK 314 (808)
Q Consensus 245 ~l~~g-l~d~~-ISR~-~~---WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~----~~~~~~w~~p~d~~~vh~~Gk 314 (808)
+..++ +.+-+ ++|+ .+ ||++.|++ +. | ++++|+-. .+|. ..-.++...+.| ||.+|.
T Consensus 210 ~~g~~~l~~~~~~Kr~~~DFaLWk~~kpge--p~-----W-~SpwG~Gr--PGWHiECsam~~~~lg~~~D---Ih~gG~ 276 (651)
T PTZ00399 210 AEGEGALGKVSGEKRSPNDFALWKASKPGE--PS-----W-DSPWGKGR--PGWHIECSAMASNILGDPID---IHSGGI 276 (651)
T ss_pred hcccCCccccCcCCCCCccHHhhCCCCCCC--CC-----C-CCCCCCCC--CCchHHHHHHHHHHcCCcce---eeccCC
Confidence 22222 33333 5552 33 66666654 11 3 35555521 2332 234445555666 999999
Q ss_pred ccccchhcHHHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccC
Q 003601 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (808)
Q Consensus 315 Dii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs 394 (808)
|++|+||.+..|+..|+....+.++.++|+|||+++|+|||||+||+|++.|+++ .||+|++||||++ .++++|++||
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLe-kygaDaLR~~lLs-~~~~~dldFS 354 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALS-KYTARQIRLLFLL-HKWDKPMNYS 354 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHH-HcChHHHHHHHHh-cCCCCCCccC
Confidence 9999999999999998754334567777779999999999999999999999999 6999999999997 5889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHH
Q 003601 395 WADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLK 473 (808)
Q Consensus 395 ~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~ 473 (808)
++.+.+..|.+ +.|.|++.|+.+.+.+ .. .+... ...+.+++++..+..+...+.++| ++|+++.|+.
T Consensus 355 ~e~l~~a~~~~--~~l~n~~~rl~s~l~~----~~---~~~~~--~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~ 423 (651)
T PTZ00399 355 DESMDEAIEKD--KVFFNFFANVKIKLRE----SE---LTSPQ--KWTQHDFELNELFEETKSAVHAALLDNFDTPEALQ 423 (651)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhh----cc---ccccc--cCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999886654 5677888887766554 11 11110 123457889999999999999999 7899999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHH
Q 003601 474 TAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLAC 518 (808)
Q Consensus 474 ~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ 518 (808)
.|++|++.+|+|++... ......+..+...+..++.+|++
T Consensus 424 ~L~eLv~~~N~yi~~~~-----~~~~~ll~~v~~~l~~~l~ILGl 463 (651)
T PTZ00399 424 ALQKLISATNTYLNSGE-----QPSAPLLRSVAQYVTKILSIFGL 463 (651)
T ss_pred HHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHhcccC
Confidence 99999999999997210 01112233444555555666665
No 46
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-52 Score=464.12 Aligned_cols=383 Identities=16% Similarity=0.170 Sum_probs=277.5
Q ss_pred CCCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEec----------CcchhhHHH
Q 003601 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYIC----------GTDEYGTAT 76 (808)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~----------G~D~hG~~i 76 (808)
++.+++.|.|.. ++-++|+|. ||||+.+||||+|+ +|.+|+++||+|+.||+|.|++ |+|+||+||
T Consensus 9 lt~~ke~f~p~~~~~v~mYvCG--pTvy~~~HiGhar~-~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKi 85 (490)
T PRK14536 9 LGRQQEEFQPIEHGHVRLYGCG--PTVYNYAHIGNLRT-YVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKM 85 (490)
T ss_pred CCCCeeccccCCCCceEEEeeC--CccCCCcccchhHH-HHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHH
Confidence 567788888864 444566554 78999999999997 7899999999999999999997 666779999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccc
Q 003601 77 ETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156 (808)
Q Consensus 77 ~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d 156 (808)
+.+|+++|++|++++++|++.|+++|++|||.++.++ ++.++|...++++|++|.++|++|++.+.+|||+.
T Consensus 86 i~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~------- 157 (490)
T PRK14536 86 VKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR------- 157 (490)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC-------
Confidence 9999999999999999999999999999999986554 33469999999999999999999999999999996
Q ss_pred ccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCC
Q 003601 157 RLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWS 235 (808)
Q Consensus 157 ~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~ 235 (808)
+||. ||.. .| .+..++.. |..+..... +.++ +|..|.
T Consensus 158 -----~~~~--------YG~L---s~--~~~~~l~~------g~~v~~~~~------------------K~np~DFaLWK 195 (490)
T PRK14536 158 -----TFPS--------YGSL---AS--AAVEDLQA------GARIEHDTN------------------KRNPHDFVLWF 195 (490)
T ss_pred -----cccc--------hhhh---cC--CCHHHhhc------CCcCCCCCC------------------CCCchhchhcc
Confidence 2332 2211 00 01112111 211110000 1111 233344
Q ss_pred hhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeec
Q 003601 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315 (808)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkD 315 (808)
.. .++++..++++.+||.++|+|+ ++|+..-.+|.....| ||++|+|
T Consensus 196 ~~----------~~~~~~~~~W~SpWG~GRPGWH--------------------IECsaMs~~~lg~~~D---IH~GG~D 242 (490)
T PRK14536 196 TR----------SKFENHALTWDSPWGRGYPGWH--------------------IECSAMSMKYLGEQCD---IHIGGVD 242 (490)
T ss_pred cc----------cCCCCCCCcccCCCCCCCCChH--------------------HHHHHHHHHHcCCcee---EEecccc
Confidence 21 2344556788999999999993 3444444556644344 9999999
Q ss_pred cccchhcHHHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCH
Q 003601 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (808)
Q Consensus 316 ii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~ 395 (808)
++||||.+++|+.+++... ++++.|+++||++++|+|||||+||+|++.|+++.+|+++++|||+++ ++++++++||+
T Consensus 243 liFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~Fs~ 320 (490)
T PRK14536 243 HIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFSW 320 (490)
T ss_pred CCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCCH
Confidence 9999999999999986432 678999999999999999999999999999999955999999999998 88999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Q 003601 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKT 474 (808)
Q Consensus 396 ~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~ 474 (808)
+.|.++.| -.++|.|++.++...... ...+................+...+..+...+.++| ++|+++.|+..
T Consensus 321 e~l~~a~~--~~~rl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~ 394 (490)
T PRK14536 321 EALKTAKA--ARRSLVRRVARVVDAARA----TTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE 394 (490)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhhhc----ccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99998843 344555555544321111 000000000000000000001123445667888999 78999999999
Q ss_pred HHHHHHHHHH
Q 003601 475 AMSISSEGNA 484 (808)
Q Consensus 475 i~~l~~~~N~ 484 (808)
|+++++.+|.
T Consensus 395 l~~~~~~~n~ 404 (490)
T PRK14536 395 LQKLVKDTSV 404 (490)
T ss_pred HHHHHHHhhh
Confidence 9999998874
No 47
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=3.7e-51 Score=462.57 Aligned_cols=376 Identities=14% Similarity=0.105 Sum_probs=289.6
Q ss_pred CCCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003601 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (808)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (808)
++.+++.|.|.. |+-++|+|. |||+|.+||||+|+ +|.+|+++||+|+.||+|.|++|+||||+||+.+|+++|++
T Consensus 66 ltr~ke~f~P~~~~~v~~Y~CG--pTvYd~~HIGhaR~-~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~ 142 (557)
T PLN02946 66 MSRKKELFKPKVEGKVGMYVCG--VTAYDLSHIGHARV-YVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGED 142 (557)
T ss_pred CCCCeeccccCCCCceeEEEeC--CccCCCCccccchh-hHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCC
Confidence 466777788754 445678764 78889999999997 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCC
Q 003601 87 PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFE 166 (808)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~ 166 (808)
|++++++|++.|.++|++|||. +.+++|+..+|...+++++++|+++|++|++.+.+|||++.-.-
T Consensus 143 ~~ela~~y~~~f~~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~------------- 208 (557)
T PLN02946 143 PISLSRRYCEEFLSDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPE------------- 208 (557)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchh-------------
Confidence 9999999999999999999998 55667877899999999999999999999999999999884221
Q ss_pred CCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHHHHHH
Q 003601 167 GCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAW 245 (808)
Q Consensus 167 ~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (808)
||.. .++.+ .++. .|..++..+. +.++ +|..|+...
T Consensus 209 -------YG~L---s~~~l--~~l~------~g~rv~~~~~------------------K~np~DFaLWK~~k------- 245 (557)
T PLN02946 209 -------YGKL---SGRKL--EDNR------AGERVAVDSR------------------KKNPADFALWKAAK------- 245 (557)
T ss_pred -------hhhc---CCCCh--hHhh------cCCCCCcccc------------------cCCccccceeccCC-------
Confidence 2211 11111 1111 1332221110 1112 344565321
Q ss_pred HHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHH
Q 003601 246 LKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (808)
Q Consensus 246 l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~p 325 (808)
.|- ++++.+||..+|+|+ ++|+.+-.+|...+.| ||.+|.|++|+||.+..
T Consensus 246 --~ge----~~W~SPWG~GRPGWH--------------------IECSaMs~~~lG~~~D---IH~GG~DL~FPHHENEi 296 (557)
T PLN02946 246 --EGE----PFWDSPWGPGRPGWH--------------------IECSAMSAAYLGHSFD---IHGGGMDLVFPHHENEI 296 (557)
T ss_pred --CCC----CCccCCCCCCCCcHH--------------------HHHHHHHHHHcCCCee---EeccccccCCCcccchH
Confidence 222 345789999999994 4555556667765556 99999999999999999
Q ss_pred HHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHH
Q 003601 326 STLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (808)
Q Consensus 326 a~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~ 405 (808)
|+..++... +..++|++||||+++|+|||||+||+|++.|+++ .|++|++|||+++ .+++++++||++.+.+. ..
T Consensus 297 AQsea~~g~-~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~-~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a--~~ 371 (557)
T PLN02946 297 AQSCAACCD-SNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVID-LYHPLALRLFLLG-THYRSPINYSDVQLESA--SE 371 (557)
T ss_pred HHHHHHhCC-CCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHH-hcCccceeeeeec-cCCCCCcEecHHHHHHH--HH
Confidence 999885322 4568999999999999999999999999999999 6999999999998 67999999999998887 45
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Q 003601 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGNA 484 (808)
Q Consensus 406 l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~i~~l~~~~N~ 484 (808)
-+.++.++++|+...+.+ .... ..... .. ..+...+..+.+.+.++| ++|+++.|+..|+++++.+|.
T Consensus 372 ~l~~l~~~~~~~~~~l~~----~~~~-~~~~~--~~----~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~ 440 (557)
T PLN02946 372 RIFYIYQTLHDCEESLQQ----HDST-FEKDS--VP----PDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTIND 440 (557)
T ss_pred HHHHHHHHHHHHHHHhhh----hccc-ccccc--cc----hhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 566788888888765543 1110 00000 00 012234455667889999 789999999999999999999
Q ss_pred HHHh
Q 003601 485 YLQE 488 (808)
Q Consensus 485 yi~~ 488 (808)
+++.
T Consensus 441 ~~~~ 444 (557)
T PLN02946 441 LLHT 444 (557)
T ss_pred Hhhh
Confidence 9864
No 48
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.5e-50 Score=456.57 Aligned_cols=364 Identities=17% Similarity=0.197 Sum_probs=283.9
Q ss_pred CCCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003601 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (808)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (808)
.+.+++.|.|.. ++.++|+|.| ||||.+||||+|+ ||.+|+++||+|++||+|.|++|+||||+||+.+|+++|++
T Consensus 9 l~~~~~~f~p~~~~~v~~yvcgP--tvy~~~HiGHar~-~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~ 85 (463)
T PRK00260 9 LTRQKEEFKPLEPGKVKMYVCGP--TVYDYAHIGHARS-FVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGES 85 (463)
T ss_pred CCCceeecccCCCCcceEEEeCC--ccCCCcccccchh-HHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCC
Confidence 456677777754 5567887775 5669999999997 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCc-cccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCC
Q 003601 87 PKEICDKYHVIHKDVYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (808)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI-~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (808)
|++++++|++.|+++|++||| .+|.+.+++ .|...+++++++|+++|++|++++.++||++.-.-
T Consensus 86 ~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~------------ 151 (463)
T PRK00260 86 IKELTERYIAAFHEDMDALNVLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPD------------ 151 (463)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccccc------------
Confidence 999999999999999999999 568888888 69999999999999999999999999999884321
Q ss_pred CCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHHHHH
Q 003601 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (808)
Q Consensus 166 ~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (808)
||... +. +..++. .|..+.... .+.++ +|..|+...
T Consensus 152 --------yg~ls---~~--~~~~~~------~~~~~~~~~------------------~K~~~~DF~Lwk~~~------ 188 (463)
T PRK00260 152 --------YGKLS---GR--NLDELQ------AGARVEVAE------------------EKRDPLDFALWKAAK------ 188 (463)
T ss_pred --------cccCC---CC--CHHHHh------ccCcCCccc------------------CCCCccccceecCCC------
Confidence 11110 00 001111 122111100 01122 344565321
Q ss_pred HHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHH
Q 003601 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (808)
Q Consensus 245 ~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~ 324 (808)
.|-. ....+||...|+|+ ++|+..-.++...+.| ||.+|+|++|+|+.+.
T Consensus 189 ---~~~~----~w~s~~g~grpgWh--------------------iecsam~~~~lg~~~D---ih~gG~DlifpHh~ne 238 (463)
T PRK00260 189 ---PGEP----SWESPWGKGRPGWH--------------------IECSAMSTKYLGETFD---IHGGGADLIFPHHENE 238 (463)
T ss_pred ---CCCC----CCCCCCCCCCCChh--------------------HHHHHHHHHhcCCCcc---eecCccccCCCchHhH
Confidence 1222 33678999999994 3444444446655666 8999999999999999
Q ss_pred HHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHH
Q 003601 325 PSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (808)
Q Consensus 325 pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~ 404 (808)
.|+..++.. .++++.++++||++++|+|||||+||+|++.|+++ .|++|++|||+++ ++++++++|+++.+.+. .
T Consensus 239 iaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~-~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a--~ 313 (463)
T PRK00260 239 IAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-KYDPEVLRFFLLS-AHYRSPLNFSEEALEQA--K 313 (463)
T ss_pred HHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHH-HcCchHhHHHHHh-CCCCCCCccCHHHHHHH--H
Confidence 999877533 25667888889999999999999999999999999 6999999999997 77899999999998877 3
Q ss_pred HHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Q 003601 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGN 483 (808)
Q Consensus 405 ~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~i~~l~~~~N 483 (808)
..++++.|+++++.. . ..+.++...+..+.+++.++| ++|+++.|+..|+++++.+|
T Consensus 314 ~~~~rl~~~~~~~~~---~-------------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n 371 (463)
T PRK00260 314 KALERLYNALAETAL---G-------------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREIN 371 (463)
T ss_pred HHHHHHHHHHHHhhh---c-------------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 457778887776531 0 012356677888889999999 59999999999999999999
Q ss_pred HHHHh
Q 003601 484 AYLQE 488 (808)
Q Consensus 484 ~yi~~ 488 (808)
+|++.
T Consensus 372 ~~~~~ 376 (463)
T PRK00260 372 RALET 376 (463)
T ss_pred HHhhc
Confidence 99865
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.5e-51 Score=443.99 Aligned_cols=351 Identities=13% Similarity=0.091 Sum_probs=264.7
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
+-++|||.|.|| +++||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++|++|+++|++|++.|.+
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~-~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAAT-YLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRE 85 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHH-HHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 557888887666 9999999997 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCc-cccccCCCCChHHHHHHHHHHHHHHhCCceeecee----eeeccCCCCcccccccccccCCCCCCCCCCcCC
Q 003601 101 VYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEGTCPFEGCNYESARG 175 (808)
Q Consensus 101 ~~~~lgI-~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g 175 (808)
+|++||| ++|.|+|||+ |.+.+++++++|.++|++|+... .+||+++.-.- ||
T Consensus 86 d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~--------------------YG 143 (384)
T PRK12418 86 DMEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQ--------------------FG 143 (384)
T ss_pred HHHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhh--------------------cc
Confidence 9999997 8899999995 69999999999999999999998 89998874211 22
Q ss_pred chhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHHHHHHHHccCccce
Q 003601 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAWLKEGLKVRC 254 (808)
Q Consensus 176 ~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~gl~d~~ 254 (808)
.. .++ +.+++....-.++ ++.. +.-+.++ +|..|+... .| -
T Consensus 144 ~l---s~~--~~~~~~~~~~~~~---~~~~-----------------~~~K~~p~DFaLWK~~~---------~~----~ 185 (384)
T PRK12418 144 YE---SGY--DRATMLELFAERG---GDPD-----------------RPGKRDPLDALLWRAAR---------PG----E 185 (384)
T ss_pred cc---cCC--CHHHHHhhhcccc---cCcc-----------------cccCCCcccceeeccCC---------CC----C
Confidence 11 000 0001110000000 0000 0001112 334465320 11 1
Q ss_pred eccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCC
Q 003601 255 ITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (808)
Q Consensus 255 ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~ 334 (808)
++.+.+||..+|+|+ ++|+..-.++...+.| ||.+|.|++|+|+.++.|+..++...
T Consensus 186 ~~w~spwG~GRPGWH--------------------iECsam~~~~lg~~~D---IH~GG~DL~FPHHeneiaq~~a~~g~ 242 (384)
T PRK12418 186 PSWPSPFGPGRPGWH--------------------IECSAIALNRLGSGFD---IQGGGSDLIFPHHEFSAAHAEAATGE 242 (384)
T ss_pred CcccCCCCCCCChhH--------------------HHHHHHHHHHcCCCcc---cccCccccccchhHhHHHHHHHhcCC
Confidence 455789999999994 4555555667766667 89999999999999999999886432
Q ss_pred cccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Q 003601 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (808)
Q Consensus 335 ~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (808)
.+.++.|++.|+|+.+|+|||||+||+|++.++++.+++++++|||+++ ++++++++||++.+.+.. .-.+++.|++
T Consensus 243 ~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls-~~yr~~l~fs~e~l~~a~--~~l~r~~~~~ 319 (384)
T PRK12418 243 RRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLA-GHYRADREWTDAVLAEAE--ARLARWRAAA 319 (384)
T ss_pred CCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEec-cCCCCCcccCHHHHHHHH--HHHHHHHHHH
Confidence 2466777777899999999999999999999998645777799999994 889999999999998862 2333344443
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003601 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQESQ 490 (808)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (808)
.+. . . . .+..+.+.+.++| ++++++.|+..|+++++.+|.|+...+
T Consensus 320 ~~~------------~-----~--~-----------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 320 ALP------------A-----G--P-----------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDA 366 (384)
T ss_pred hcc------------c-----c--c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 320 0 0 0 1122356788888 679999999999999999999987644
No 50
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=4.6e-50 Score=454.31 Aligned_cols=364 Identities=16% Similarity=0.152 Sum_probs=278.4
Q ss_pred CCCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003601 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (808)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (808)
.+.+++.|.|.. ++.++|+|.| ||||.+||||+|+ +|.+|+++||+|++||+|.|++|+||||+||+.+|+++|++
T Consensus 7 lt~~~e~f~p~~~~~v~~yvcgp--tvy~~~HiGhar~-~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~ 83 (465)
T TIGR00435 7 LTRQKEEFEPLVQGKVKMYVCGP--TVYDYCHIGHART-AIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGES 83 (465)
T ss_pred CCCCeeccccCCCCcceEEEecC--ccCCCcccccchH-HHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCC
Confidence 466778888754 5667887765 7889999999997 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccc-CCCCChHHHHHHHHHHHHHHhCCceeece-eeeeccCCCCcccccccccccCC
Q 003601 87 PKEICDKYHVIHKDVYKWFDISFDNF-GRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCP 164 (808)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~D~f-~rT~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp 164 (808)
|+++|++|++.|++++++|||++|.+ .+++ .|...+++++++|.++|++|+.. +.+|||++|...+.
T Consensus 84 ~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG--------- 152 (465)
T TIGR00435 84 VYEVSERFIEAYFEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYG--------- 152 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhc---------
Confidence 99999999999999999999999875 5666 79999999999999999999998 99999998643221
Q ss_pred CCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHHHH
Q 003601 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATH 243 (808)
Q Consensus 165 ~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 243 (808)
... ++ +..++. .|..++. .. . +.++ +|..|+...
T Consensus 153 -----------~ls---~~--~~~~~~------~~~~~~~----------~~-------~-K~~p~DF~Lwk~~~----- 187 (465)
T TIGR00435 153 -----------KLS---KQ--DLDQLE------AGARVDV----------DE-------A-KRNKLDFVLWKSSK----- 187 (465)
T ss_pred -----------cCC---CC--CHHHHh------cccccCc----------cc-------c-cCCCCCceeeCCCC-----
Confidence 100 00 000111 1111110 00 0 1122 344465321
Q ss_pred HHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcH
Q 003601 244 AWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (808)
Q Consensus 244 ~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~ 323 (808)
.|- ++.+.+||...|+|+ ++|+..-.+|...+.| ||.+|.|++++|+.+
T Consensus 188 ----~~~----~~w~spwG~grpgWh--------------------iecsam~~~~lg~~~D---ih~gG~Dl~fpHhen 236 (465)
T TIGR00435 188 ----EGE----PKWDSPWGKGRPGWH--------------------IECSAMNDKYLGDQID---IHGGGVDLIFPHHEN 236 (465)
T ss_pred ----CCC----CCCcCCCCCCCCCcH--------------------hHHHHHHHHhcCCCce---eeccccccccchHHH
Confidence 122 345789999999994 3444444445554566 899999999999999
Q ss_pred HHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHH
Q 003601 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (808)
Q Consensus 324 ~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n 403 (808)
+.|+..++... ++++.++++||++++|+|||||+||+|++.|+++ .|++|++|||+++ .+++++++|+++.+.+.
T Consensus 237 e~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~-~~~~dalR~~ll~-~~~~~~l~fs~~~l~~a-- 311 (465)
T TIGR00435 237 EIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK-NYDPEILRYFLLS-VHYRSPLDFSEELLEAA-- 311 (465)
T ss_pred HHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-HCCHHHHHHHHHh-CCCCCCCccCHHHHHHH--
Confidence 99999886332 5778889999999999999999999999999999 6999999999997 67899999999999987
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 003601 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (808)
Q Consensus 404 ~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~i~~l~~~~ 482 (808)
....++|.|+++++...... .. ..+. . +......+.+.+.++| ++|+++.|+..|+++++.+
T Consensus 312 ~~~~~rl~~~~~~~~~~~~~----~~--~~~~----~-------~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~ 374 (465)
T TIGR00435 312 KNALERLYKALRVLDTTLAY----SG--NQSL----N-------KFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSI 374 (465)
T ss_pred HHHHHHHHHHHHHHHhhhcc----cc--cccc----c-------cchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHh
Confidence 45688899998887543221 00 0000 0 0011223456777888 7899999999999999999
Q ss_pred H
Q 003601 483 N 483 (808)
Q Consensus 483 N 483 (808)
|
T Consensus 375 n 375 (465)
T TIGR00435 375 N 375 (465)
T ss_pred h
Confidence 9
No 51
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.2e-50 Score=447.64 Aligned_cols=377 Identities=18% Similarity=0.179 Sum_probs=276.3
Q ss_pred CCCCCCCCCCCCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEe---------cCc-chhhHHHH
Q 003601 8 NPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYI---------CGT-DEYGTATE 77 (808)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v---------~G~-D~hG~~i~ 77 (808)
.+.+++.|.|. ++-++|+| .|||++.+||||+|+ +|.+|+++||+|++||+|.|+ +|+ |+||+||+
T Consensus 9 ltr~ke~f~p~-~~v~mY~C--GpTVYd~~HiGh~r~-~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi 84 (481)
T PRK14534 9 KTKDLSELKNF-SDVKVYAC--GPTVYNYAHIGNFRT-YIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVV 84 (481)
T ss_pred CCCCeeecccC-CceEEEeC--CCCCCCCCCccchhH-HHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHH
Confidence 46677778775 55566654 478889999999997 788999999999999999995 555 44589999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccc
Q 003601 78 TKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADR 157 (808)
Q Consensus 78 ~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~ 157 (808)
.+|+++|++|++++++|++.|.+++++|||.++.|++|. ++|...+++++++|.++|++|+..+.+|||+++-
T Consensus 85 ~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~a-tehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~------ 157 (481)
T PRK14534 85 KAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVA-SEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF------ 157 (481)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCc-cchHHHHHHHHHHHHHCCCEEEECCeEEEecccc------
Confidence 999999999999999999999999999999999888864 6999999999999999999999999999999862
Q ss_pred cccccCCCCCCCCCCcCCchhhccCCCCCccccCC-CccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCC
Q 003601 158 LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWS 235 (808)
Q Consensus 158 ~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~-p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~ 235 (808)
|. ||... | .++.+ +.|. |..+. ++. .+.++ +|..|.
T Consensus 158 ----------~~----YG~ls---~-----~~l~~l~~~~--~~~v~----------~~~--------~K~np~DFaLWK 195 (481)
T PRK14534 158 ----------KS----YGQMA---G-----INLNDFKDMS--VSRVE----------IDK--------SKRNKSDFVLWF 195 (481)
T ss_pred ----------cc----hhhhc---C-----CCHHHHhhhc--cCcCC----------ccc--------CCCCcccchhcC
Confidence 21 22211 1 11111 1121 11111 110 01111 233344
Q ss_pred hhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeec
Q 003601 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315 (808)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkD 315 (808)
. ..++.+..++++.+||...|+|+ ++|+..-.+|.....| ||++|+|
T Consensus 196 ~----------~~~~~~~~~~w~spWG~GrPgWH--------------------iECsam~~~~lg~~~D---IH~GG~D 242 (481)
T PRK14534 196 T----------NSKFKDQEMKWDSPWGFGYPSWH--------------------LECAAMNLEYFKSTLD---IHLGGVD 242 (481)
T ss_pred c----------CCcCCCCCCeecCCCCCcCCcHH--------------------HHHHHHHHHHcCCcce---EEecccc
Confidence 2 23466777899999999999993 3444432333323345 9999999
Q ss_pred cccchhcHHHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCH
Q 003601 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (808)
Q Consensus 316 ii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~ 395 (808)
++||||.+++|+.+++.. .++++.|+++||++++|+|||||+||+|+++|+++.+++++++|||+++ ++++++++||+
T Consensus 243 liFPHHene~Aqs~a~~g-~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~Fs~ 320 (481)
T PRK14534 243 HIGVHHINEIAIAECYLN-KKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKFTF 320 (481)
T ss_pred cCCCcchhHHHHHhhhcC-CCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCCCH
Confidence 999999999999998642 3688999999999999999999999999999999856999999999988 88999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Q 003601 396 ADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKT 474 (808)
Q Consensus 396 ~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~ 474 (808)
+.+.++. .-.+++.+.++++...+.. .++...... .... .......+.+.+.++| ++|+++.|+..
T Consensus 321 e~l~~a~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~---~~~~~~~~~~~f~~Al~DDlNtp~Al~~ 387 (481)
T PRK14534 321 NNLKACK--IARENMLNKLTYFYSSLDQ-----FDLNLLNKD---LENI---EFSLEKEYYDSFLEKIAFDLNIPQGLAL 387 (481)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHhhhh-----ccccccccc---cccc---hhhhHHHHHHHHHHHHhhcCChHHHHHH
Confidence 9999873 3344444444443322211 000000000 0000 0011223456788888 78999999999
Q ss_pred HHHHHHHHHHH
Q 003601 475 AMSISSEGNAY 485 (808)
Q Consensus 475 i~~l~~~~N~y 485 (808)
|+++++..|..
T Consensus 388 l~~~~k~~n~~ 398 (481)
T PRK14534 388 LWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHh
Confidence 99999988863
No 52
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.1e-50 Score=444.06 Aligned_cols=357 Identities=14% Similarity=0.090 Sum_probs=269.5
Q ss_pred CCCCCCCCCCCCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCH
Q 003601 8 NPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP 87 (808)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p 87 (808)
.+.+++.|.| .++-++|||+|.|| +.+||||+|+ +|.+|+++||+|+.||+|.|++|+||||+||+.+|+++|++|
T Consensus 24 lt~~~~~f~p-~~~v~~YvCGpTvY--~~~HIGhart-~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~ 99 (411)
T TIGR03447 24 ADGQVRPVEP-GPEAGMYVCGITPY--DATHLGHAAT-YLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDW 99 (411)
T ss_pred CCCCeeeccC-CCcceEEEeCCccC--CCcccccchH-HHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCH
Confidence 4667777888 67778999998777 9999999998 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcc-ccccCCCCChHHHHHHHHHHHHHHhCCceeecee----eeeccCCCCccccccccccc
Q 003601 88 KEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEGT 162 (808)
Q Consensus 88 ~e~~~~~~~~~~~~~~~lgI~-~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g~ 162 (808)
+++|++|++.|+++|++|||. +|.|+|||+ |...++++|++|.++|+||+... .+||+++.-.-
T Consensus 100 ~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe--~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~--------- 168 (411)
T TIGR03447 100 RELGTSQIDLFREDMEALRVLPPRDYIGAVE--SIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQ--------- 168 (411)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccCCCC--CHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhc---------
Confidence 999999999999999999986 899999994 58999999999999999999886 79998874211
Q ss_pred CCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHH
Q 003601 163 CPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQA 241 (808)
Q Consensus 163 cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 241 (808)
||.. .|+.+ +++....-.++ ++.. +.-+.++ +|..|+...
T Consensus 169 -----------YG~L---s~~~~--~~~~~~~~~~~---~~~~-----------------~~~K~~p~DFaLWK~~~--- 209 (411)
T TIGR03447 169 -----------FGYE---SGYDR--ATMLELFAERG---GDPD-----------------RPGKRDPLDALLWRAAR--- 209 (411)
T ss_pred -----------cccc---cCCCH--HHHHhhhcccc---cCcc-----------------cccCCCCcccceeCCCC---
Confidence 2211 01000 01110000000 0000 0001111 344565321
Q ss_pred HHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchh
Q 003601 242 THAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHT 321 (808)
Q Consensus 242 ~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~ 321 (808)
.|- ++.+.+||..+|+|+ ++|+..-.+|...+.| ||.+|.|++|+|+
T Consensus 210 ------~~e----~~w~spwG~GRPGWH--------------------iECsam~~~~lg~~~D---ih~GG~DLifpHh 256 (411)
T TIGR03447 210 ------EGE----PSWDSPFGPGRPGWH--------------------IECSAIATNRLGAGFD---IQGGGSDLIFPHH 256 (411)
T ss_pred ------CCC----CCccCCCCCCCChhH--------------------HHHHHHHHHHcCCcee---cccCcccccccch
Confidence 121 355789999999994 4555555667765556 8999999999999
Q ss_pred cHHHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHH
Q 003601 322 VMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (808)
Q Consensus 322 i~~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~ 401 (808)
.+..|+..|+....+.++.|+++|||+++|+|||||+||+|++.++++.++++|++|||+++ ++++++++||++.+.+.
T Consensus 257 eneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~l~~a 335 (411)
T TIGR03447 257 EFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLAEA 335 (411)
T ss_pred HhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHHHHHH
Confidence 99999998864322567888888999999999999999999999998755899999999995 89999999999999886
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 003601 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISS 480 (808)
Q Consensus 402 ~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~i~~l~~ 480 (808)
...++++.+++.+. . . . .+..+...+.++| ++++++.|+..|+++++
T Consensus 336 --~~~l~rl~~~~~~~------------~-----~--~-----------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~ 383 (411)
T TIGR03447 336 --EARLARWRAALAAT------------D-----A--P-----------DATDLIARLRQHLANDLDTPAALAAVDNWAA 383 (411)
T ss_pred --HHHHHHHHHHHhhc------------c-----c--c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33444444444321 0 0 0 0112345666788 78999999999999998
Q ss_pred HHHH
Q 003601 481 EGNA 484 (808)
Q Consensus 481 ~~N~ 484 (808)
.+|.
T Consensus 384 ~~n~ 387 (411)
T TIGR03447 384 AALS 387 (411)
T ss_pred HHHh
Confidence 7765
No 53
>KOG2241 consensus tRNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-51 Score=411.25 Aligned_cols=169 Identities=63% Similarity=1.040 Sum_probs=164.9
Q ss_pred CCCCccCceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccc
Q 003601 640 TAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSH 719 (808)
Q Consensus 640 ~~~~~~~~~~~~~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~ 719 (808)
+.+..+++++||||||+|+++++||+||+||+++||+|+.++|||||||++|.+.|+|+||+|+|+|||||+||||++|+
T Consensus 87 ~~~~~p~~~~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~VvvlcNLKPakmRgv~S~ 166 (255)
T KOG2241|consen 87 MMEAGPDVSLLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVVLCNLKPAKMRGVKSQ 166 (255)
T ss_pred cccCCCCcceeeEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCHHHHhCCeEEEEeccccccccccccc
Confidence 45556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeecCCCCeEEEEcCCCCCCCCceeecCCCCCCCCCCCCcchhhHHHhccCceecCCeEEEecCeeeEecCCceee
Q 003601 720 AMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTV 799 (808)
Q Consensus 720 gmll~~~~~~~~~~~~l~~~~~~~~G~~v~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~ 799 (808)
||+||++++++..||+|.||.++.||+||+|+||+|+|+++||||||+||.+|++|+|+++|+|+|||.+|+|+.|.|++
T Consensus 167 gMvlcaSs~d~~~VE~l~pP~gs~pGdRv~fegfegePd~~LnPKKKiwE~iqpdl~t~~~~va~yKg~~~~~~~G~~~a 246 (255)
T KOG2241|consen 167 GMVLCASSPDKSVVEPLAPPAGSKPGDRVTFEGFEGEPDKELNPKKKIWEKIQPDLKTNEEGVATYKGAPFETKKGVCTA 246 (255)
T ss_pred eeEEecCCcccceeeeccCCCCCCCCCeeeecCCCCCcchhcChhhhhHHHhCCCcccccceEEEecCCceeccCceEEE
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccC
Q 003601 800 SSIQSGSIR 808 (808)
Q Consensus 800 ~~~~~~~i~ 808 (808)
.||.||+||
T Consensus 247 ~ti~n~~Ik 255 (255)
T KOG2241|consen 247 QTISNGGIK 255 (255)
T ss_pred eeccCCCCC
Confidence 999999997
No 54
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.4e-49 Score=444.00 Aligned_cols=361 Identities=16% Similarity=0.159 Sum_probs=274.3
Q ss_pred CCCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003601 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (808)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (808)
.+.+++.|.|.. +.-++|+|. |||++.+||||+|+ +|.+|+++||+|+.||+|.|++|+||||+||+.+|+++|++
T Consensus 234 ltr~ke~f~P~~~~~V~mYvCG--PTVYd~~HIGHaRt-~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~s 310 (699)
T PRK14535 234 LTRQKEPFAPIDPENVRMYVCG--MTVYDYCHLGHARV-MVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGET 310 (699)
T ss_pred CCCCeeccccCCCCceEEEecC--CcCCCCCcccchhH-HHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCC
Confidence 466777787754 344566554 68889999999997 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeece-eeeeccCCCCcccccccccccCCC
Q 003601 87 PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPF 165 (808)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~ 165 (808)
|++++++|.+.|.+++++|||.++.+ +|+..+|...+++++++|.++|++|++. +.+|||+++-.-
T Consensus 311 p~ela~~y~~~F~~d~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~------------ 377 (699)
T PRK14535 311 IGELTARFIQAMHEDADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA------------ 377 (699)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc------------
Confidence 99999999999999999999999876 5656699999999999999999999874 589999984321
Q ss_pred CCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHHHHH
Q 003601 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (808)
Q Consensus 166 ~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (808)
||.. .|+ +..++ ..|.+++..+ .+.++ +|..|+...
T Consensus 378 --------YG~L---S~~--~~~~l------~~g~rve~d~------------------~Krnp~DFaLWK~sk------ 414 (699)
T PRK14535 378 --------YGQL---SGK--SLDDL------RAGERVEVDG------------------FKRDPLDFVLWKAAK------ 414 (699)
T ss_pred --------cccc---cCC--ChHHh------cCCCcccccc------------------ccCCccccceeccCC------
Confidence 2211 011 11111 1233222110 01122 344565421
Q ss_pred HHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHH
Q 003601 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (808)
Q Consensus 245 ~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~ 324 (808)
.|- ++++.+||-.+|+|+ ++|+....+|...+.| ||.+|.|++|+||.+.
T Consensus 415 ---~Ge----p~W~SPWG~GRPGWH--------------------IECSAMs~~~LG~~~D---IHgGG~DLiFPHHENE 464 (699)
T PRK14535 415 ---AGE----PAWESPWGNGRPGWH--------------------IECSAMSENLFGDTFD---IHGGGADLQFPHHENE 464 (699)
T ss_pred ---CCC----CCccCCCCCCCCchH--------------------HHHHHHHHHHcCCcce---eECCccccCCCCCccH
Confidence 232 345789999999994 4555566667765566 9999999999999999
Q ss_pred HHHhhhCCCC---------------cccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCC
Q 003601 325 PSTLLGTGEN---------------WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389 (808)
Q Consensus 325 pa~l~a~g~~---------------~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~ 389 (808)
.|+..|+... -+..++|+++||++++|+|||||+||+|++.++++ .|++|++|||+++ +++++
T Consensus 465 iAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe-~ygpdalRl~lLs-shYRs 542 (699)
T PRK14535 465 IAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLK-QYDPEVVRFFILR-AHYRS 542 (699)
T ss_pred HHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHH-hCCHHHHHHHHHc-CCCCC
Confidence 9999875321 02467999999999999999999999999999999 6999999999998 78999
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccH
Q 003601 390 DTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKL 468 (808)
Q Consensus 390 D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~ 468 (808)
+++||++.+.++ ...++++.+++.++.. . . + . +...+..+.+.+.++| ++|++
T Consensus 543 pL~fS~e~Le~A--k~~l~Rl~~~l~~~~~---~------~---~----~--------~~~~l~~~~~~f~~AL~DDlnt 596 (699)
T PRK14535 543 PLNYSDAHLDDA--KGALTRLYTTLKNTPA---A------E---F----M--------LSENVNDYTRRFYAAMNDDFGT 596 (699)
T ss_pred CCCcCHHHHHHH--HHHHHHHHHHHHhhhh---c------c---c----h--------hhhhHHHHHHHHHHHHhhccCh
Confidence 999999999886 3334444444433210 0 0 0 0 0122345667888889 78999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003601 469 KQGLKTAMSISSEGNAY 485 (808)
Q Consensus 469 ~~al~~i~~l~~~~N~y 485 (808)
+.|+..|+++++.+|.+
T Consensus 597 p~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 597 VEAVAVLFELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 55
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-48 Score=422.55 Aligned_cols=365 Identities=18% Similarity=0.211 Sum_probs=282.8
Q ss_pred CCCCCCCCCCCC-CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003601 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (808)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (808)
.+.+++.|.|.. |+-++|||. |||++.+||||+|+ +|..|+++||++.+||.|.||.+++|.++||..+|.+.|.+
T Consensus 8 ltr~ke~F~P~~~~~V~mYvCG--pTVYd~~HIGhaRt-~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~ 84 (464)
T COG0215 8 LTRQKEEFVPIDPGKVKMYVCG--PTVYDYAHIGHART-YVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLS 84 (464)
T ss_pred CccceecccCCCCCeEEEEecC--CccCCccccccCcc-eehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCC
Confidence 577888899965 455677665 68889999999997 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCc-cccccCCCCChHHHHHHHHHHHHHHhCCceeec-eeeeeccCCCCcccccccccccCC
Q 003601 87 PKEICDKYHVIHKDVYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTCP 164 (808)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI-~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~cp 164 (808)
+.+++++|.+.|.+++++||| .+|.+.|.| +|...+.+++++|.++|++|.. .+.++|+++.-.-+.
T Consensus 85 ~~ev~~~~i~~f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG--------- 153 (464)
T COG0215 85 IREVAERYIAAFFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYG--------- 153 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhH---------
Confidence 999999999999999999999 569999988 8999999999999999999998 679999988433211
Q ss_pred CCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHHHH
Q 003601 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATH 243 (808)
Q Consensus 165 ~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 243 (808)
.. .|+- +.+++. .|..+...+. +.+| +|..|+..
T Consensus 154 -----------~L---S~~~-~le~l~------~gar~~~~~~------------------Krnp~DFvLWK~s------ 188 (464)
T COG0215 154 -----------KL---SGRD-SLEELQ------AGARVEVDEE------------------KRNPLDFVLWKAA------ 188 (464)
T ss_pred -----------hh---cCCC-ChhHHh------hccccccccc------------------cCCchhheeeccC------
Confidence 10 0000 000111 1111111111 1111 23345431
Q ss_pred HHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcH
Q 003601 244 AWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (808)
Q Consensus 244 ~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~ 323 (808)
+.|.+ +++.+||...|+|+ ++|+..-.+|..+..| ||.+|.|++|+||.+
T Consensus 189 ---k~gEp----~W~SPWG~GRPGWH--------------------IECSaM~~~~LG~~~D---IHgGG~DLiFPHHEN 238 (464)
T COG0215 189 ---KPGEP----SWDSPWGKGRPGWH--------------------IECSAMSTKYLGETFD---IHGGGSDLIFPHHEN 238 (464)
T ss_pred ---CCCCC----CCCCCCCCCCCchh--------------------HHHHHHHHHHhCCCcc---eecCcccccCCCccc
Confidence 12333 34889999999994 4555555667765566 999999999999999
Q ss_pred HHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHH
Q 003601 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (808)
Q Consensus 324 ~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n 403 (808)
..|+..|+....++.++|+|+|||+++|+|||||+||+|++.|+++ .|++++|||||++ ++|+++++||++.+.++
T Consensus 239 EiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~-~~~p~~lR~~lls-~HYR~pl~fsee~L~~A-- 314 (464)
T COG0215 239 EIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK-KYDPEVLRLFLLS-SHYRSPLDFSEELLEEA-- 314 (464)
T ss_pred HHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh-hcCHHHHHHHHHH-HHhCCccccCHHHHHHH--
Confidence 9999999865335689999999999999999999999999999999 6999999999998 89999999999999987
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 003601 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (808)
Q Consensus 404 ~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~i~~l~~~~ 482 (808)
.....+|.|++.++...... .. . ..+..+..++.++| ++|+++.|+..++++++.+
T Consensus 315 ~~~l~rl~~~~~~~~~~~~~------------~~---~--------~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~ 371 (464)
T COG0215 315 KKALERLYNALRRLRDLAGD------------AE---L--------ADLKEFEARFREALDDDFNTPKALAVLFELAKEI 371 (464)
T ss_pred HHHHHHHHHHHHHHHhhccc------------cc---c--------chhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 44566677777765422111 00 0 02334555677888 7899999999999999988
Q ss_pred HHHHHh
Q 003601 483 NAYLQE 488 (808)
Q Consensus 483 N~yi~~ 488 (808)
|..++.
T Consensus 372 ~~~~~~ 377 (464)
T COG0215 372 NRLLEE 377 (464)
T ss_pred hhhhhc
Confidence 776654
No 56
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-42 Score=368.99 Aligned_cols=380 Identities=16% Similarity=0.150 Sum_probs=286.0
Q ss_pred CCCCCCCCCCCCCCCC-cEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHH-HCCCceeEecCcchhhHHHHHHHHH--
Q 003601 7 ENPAAPPPKLPIPGKR-NILITSALPYVNNVPHLGNIIGSVLSADVFARFCR-LRGYNAIYICGTDEYGTATETKAME-- 82 (808)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r-~~G~~V~~v~G~D~hG~~i~~~A~~-- 82 (808)
-+++.+++|.|..|.+ .+|+|. |||++..||||||+ ||..||+.|+++ ..||+|.|++|++|.++||+.+|++
T Consensus 40 slTr~Ke~fip~~~~~v~wY~CG--pTvYD~SHmGHArs-YVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~ 116 (586)
T KOG2007|consen 40 SLTRQKEVFIPNNGNKVTWYICG--PTVYDSSHMGHARS-YVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEE 116 (586)
T ss_pred ccccccceeeeCCCCeEEEEEec--Ccccchhhhhhhhh-hhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhh
Confidence 3788999999987764 566544 79999999999997 799999999999 6699999999999999999999972
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhcCccc-cccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccc
Q 003601 83 DNCSPKEICD---KYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (808)
Q Consensus 83 ~g~~p~e~~~---~~~~~~~~~~~~lgI~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (808)
.+..|..+.+ .|.+.|.++|.+|++-+ |...|.+ +|...+..+++++.++|+.|...+.+||++..-..
T Consensus 117 m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~----- 189 (586)
T KOG2007|consen 117 MGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPH----- 189 (586)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEecccccc-----
Confidence 3444444433 57799999999999955 6776666 89999999999999999999999999999874320
Q ss_pred ccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhH
Q 003601 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA 238 (808)
Q Consensus 159 v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~ 238 (808)
.||..- |.. +.+..+. |.....++... .+|..|+..
T Consensus 190 --------------~YgKL~---G~~---~~~~~gE----g~l~ds~KR~p-------------------~DFALWKAs- 225 (586)
T KOG2007|consen 190 --------------SYGKLV---GQR---KNLQEGE----GVLSDSRKRSP-------------------ADFALWKAS- 225 (586)
T ss_pred --------------hhhhhc---Cch---hhcccCc----CccccccCCCh-------------------hhhhhhhhc-
Confidence 111110 100 0000000 10000000000 122233321
Q ss_pred HHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeecccc
Q 003601 239 IQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP 318 (808)
Q Consensus 239 ~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~ 318 (808)
+.|-+-| ..+||-..|+|+. +|+..-..+.....| ||-+|.|+.|
T Consensus 226 --------K~gEP~W----eSPWG~GRPGWHI--------------------ECSaMas~~lG~~lD---IH~GG~DL~F 270 (586)
T KOG2007|consen 226 --------KPGEPSW----ESPWGKGRPGWHI--------------------ECSAMASAILGSQLD---IHGGGIDLAF 270 (586)
T ss_pred --------CCCCCCC----CCCCCCCCCCcee--------------------eeHHHHHHhhccccc---eecCcccccC
Confidence 2233333 6799999999953 333333334433455 9999999999
Q ss_pred chhcHHHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHH
Q 003601 319 FHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADL 398 (808)
Q Consensus 319 fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l 398 (808)
+||.+..|+..|.-..-...++++|+|||+++|+|||||++|+|++.++++ .|+|++||++||+ ..+++++|||...+
T Consensus 271 PHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk-~~sp~qLRl~fl~-~~wr~~ldYs~s~m 348 (586)
T KOG2007|consen 271 PHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALK-KYSPRQLRLAFLL-HQWRSPLDYSDSTM 348 (586)
T ss_pred CCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHH-hcCHHHHHHHHHH-HHhcCcCCchHHHH
Confidence 999999999998765434678999999999999999999999999999999 6999999999998 67899999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHH
Q 003601 399 QAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMS 477 (808)
Q Consensus 399 ~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~al~~i~~ 477 (808)
..+ ..+...+.||+.-+..+.+. ..|. ....+.+.+|.+.+.....++..++ ++++.+.+++.+.+
T Consensus 349 ~~a--~q~e~~~~~ff~~~~al~~~--------~~~~---~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~ 415 (586)
T KOG2007|consen 349 EQA--LQLEKSLNNFFLDVKALLRG--------AKPF---EKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRE 415 (586)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhc--------cchh---hccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHH
Confidence 877 56777788888766665543 1110 1233456788999999999999988 89999999999999
Q ss_pred HHHHHHHHHHhhc
Q 003601 478 ISSEGNAYLQESQ 490 (808)
Q Consensus 478 l~~~~N~yi~~~~ 490 (808)
++..+|.|+....
T Consensus 416 lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 416 LVSQGNAYIRESG 428 (586)
T ss_pred HHhhhhHHHHHhc
Confidence 9999999998765
No 57
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=9e-44 Score=370.54 Aligned_cols=289 Identities=18% Similarity=0.203 Sum_probs=204.1
Q ss_pred CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (808)
Q Consensus 20 ~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (808)
+.-++|+|. |||++.+||||+|+ +|..|++.||++..||+|.|++|++|.++||..+|+++|+++++++++|.+.|.
T Consensus 7 ~~v~~Y~CG--PTVYd~~HiGhaR~-~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~ 83 (300)
T PF01406_consen 7 GKVRMYVCG--PTVYDYAHIGHART-YVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFF 83 (300)
T ss_dssp TEEEEEEEE--EBTTS--BHHHHHH-HHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CeEEEEcCC--CCCCCCCCCcceee-eeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 444677665 67889999999997 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccc-cccCCCCChHHHHHHHHHHHHHHhCCceeece-eeeeccCCCCcccccccccccCCCCCCCCCCcCCch
Q 003601 100 DVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177 (808)
Q Consensus 100 ~~~~~lgI~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ 177 (808)
+++++|||.. +.+.|.| +|...+.+++++|.++|++|... +.+||+++.-.- ||..
T Consensus 84 ~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~--------------------YG~L 141 (300)
T PF01406_consen 84 EDMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPD--------------------YGKL 141 (300)
T ss_dssp HHHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTT--------------------TTTT
T ss_pred HHHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccc--------------------cccc
Confidence 9999999976 7888888 79999999999999999999999 999999873211 1111
Q ss_pred hhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCC-CCCCCChhHHHHHHHHHHccCccceec
Q 003601 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAWLKEGLKVRCIT 256 (808)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~gl~d~~IS 256 (808)
. +..+ .++. .|..+... .-+.++ +|..|+... .+. ++
T Consensus 142 s---~~~~--~~l~------~~~~~~~~------------------~~K~~p~DFaLWK~~~---------~~e----~~ 179 (300)
T PF01406_consen 142 S---NQDL--EDLE------AGARVEVD------------------YEKRNPRDFALWKAAK---------PGE----PS 179 (300)
T ss_dssp T---T-SH--HHHH------HCHHHTT-------------------TTSSSTT-EEEEEE-----------TTS------
T ss_pred c---ccch--hhHH------hhhhcccc------------------cccCCCcceeeeeccc---------ccC----Cc
Confidence 0 0000 0000 00000000 001111 223354321 111 45
Q ss_pred cccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcc
Q 003601 257 RDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT 336 (808)
Q Consensus 257 R~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~ 336 (808)
.+.+||..+|+|+ ++|+..-.++...+.| ||.+|.|++|+||.+..|+..|+... +
T Consensus 180 w~spwG~GRPGWH--------------------iECsam~~~~lG~~~D---IH~GG~DL~FPHHENEiAqs~a~~g~-~ 235 (300)
T PF01406_consen 180 WDSPWGKGRPGWH--------------------IECSAMSMKYLGDTFD---IHGGGIDLIFPHHENEIAQSEAATGK-P 235 (300)
T ss_dssp B--TTSSEEE-HH--------------------HHHHHHHHHHHTTSEE---EEEEEGGGTTTHHHHHHHHHHHHHSS--
T ss_pred ccCCCccCcCcee--------------------eehHHHHHHHcCCCce---EEccccccCCCCccchHHHHHHhhCc-h
Confidence 5789999999994 4555555566654455 99999999999999999999987543 5
Q ss_pred cCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHH
Q 003601 337 LMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (808)
Q Consensus 337 ~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~ 401 (808)
+.+.|+++|||+++|+|||||+||+|+++|+++ +|+++++||+|++ ++|+++++||++.+.++
T Consensus 236 ~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~-~~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A 298 (300)
T PF01406_consen 236 FANYWMHNGHLNVDGEKMSKSLGNFITIRDLLK-KYSPDALRLFLLS-THYRKPLNFSEENLEEA 298 (300)
T ss_dssp SEEEEEEE--EEETTCE--TTTT---BHHHHHT-TS-HHHHHHHHHT-S-TTS-EEE-HHHHHHH
T ss_pred HHHHHHHHHHHhhcCccccccCCCEEEHHHHhh-cCCHHHHHHHHhc-CCCCCccccCHHHHHHh
Confidence 788999999999999999999999999999998 6999999999998 88999999999999876
No 58
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=6.5e-39 Score=326.52 Aligned_cols=206 Identities=21% Similarity=0.180 Sum_probs=172.3
Q ss_pred CCCCCCCCCCC-CCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003601 8 NPAAPPPKLPI-PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (808)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (808)
.++++..+.|. .++.++|+|.|.|| |.+||||+|+ ++.+|+++||+|++|++|+|++|+||||+||+.+|+++|++
T Consensus 6 ~~~~~~~~~p~~~~~~~~y~~gpt~y--~~~HiGH~r~-~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~ 82 (213)
T cd00672 6 LTRQKEEFVPLNPGLVTMYVCGPTVY--DYAHIGHART-YVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLS 82 (213)
T ss_pred CCCceeeeecCCCCCceEEEeCCccC--CCcccccchh-HHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCC
Confidence 34555666554 46668998887666 8999999997 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccc-cccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCC
Q 003601 87 PKEICDKYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (808)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (808)
|+++++++++.|+++|++|||++ |.|+|| |. ..
T Consensus 83 p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt-----------------------------Wh-~e---------------- 116 (213)
T cd00672 83 WKEVADYYTKEFFEDMKALNVLPPDVVPRV-----------------------------WH-IE---------------- 116 (213)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------------------------hh-HH----------------
Confidence 99999999999999999999999 999998 32 11
Q ss_pred CCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHH
Q 003601 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW 245 (808)
Q Consensus 166 ~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (808)
|.+ +..++
T Consensus 117 --c~a----------------------------------------------------------------------m~~~~ 124 (213)
T cd00672 117 --CSA----------------------------------------------------------------------MAMKY 124 (213)
T ss_pred --HHH----------------------------------------------------------------------HHHHH
Confidence 110 01111
Q ss_pred HHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHH
Q 003601 246 LKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (808)
Q Consensus 246 l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~p 325 (808)
+ ..+.| +|..|.|++++|+.++.
T Consensus 125 l------------------------------------------------------g~~~d---ih~~G~Dl~fpH~~~~~ 147 (213)
T cd00672 125 L------------------------------------------------------GETFD---IHGGGVDLIFPHHENEI 147 (213)
T ss_pred c------------------------------------------------------CCCcc---EEeecCCCCcChHHHHH
Confidence 1 11345 89999999999999999
Q ss_pred HHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccC
Q 003601 326 STLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (808)
Q Consensus 326 a~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs 394 (808)
|+..++... +.++.+++.|++.++|+|||||+||+|++.|+++ .|++|++|||+++ .++.++++|+
T Consensus 148 a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~-~~~~da~R~~~l~-~~~~~~l~f~ 213 (213)
T cd00672 148 AQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK-KYDPEVLRLALLS-SHYRSPLDFS 213 (213)
T ss_pred HHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHH-HcCHHHHHHHHHh-CCcCCCCCCC
Confidence 998886433 4667777789999999999999999999999999 6999999999998 5578899886
No 59
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-36 Score=332.73 Aligned_cols=484 Identities=20% Similarity=0.287 Sum_probs=340.0
Q ss_pred CCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc--------------
Q 003601 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------------- 83 (808)
Q Consensus 18 ~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-------------- 83 (808)
..++++|++|-|.||.||.+||||+.+ .-..|+..-|+|++|++|+|..|+.|.|.||...|++.
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~Fs-lSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~ 118 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFS-LSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFP 118 (1080)
T ss_pred ccccCceeEeccccccCceeeccceee-hhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCc
Confidence 456889999999999999999999997 45789999999999999999999999999999888752
Q ss_pred ----------------------------------------------CC---------CHHHHHHHHHHHHHHHHHhcCcc
Q 003601 84 ----------------------------------------------NC---------SPKEICDKYHVIHKDVYKWFDIS 108 (808)
Q Consensus 84 ----------------------------------------------g~---------~p~e~~~~~~~~~~~~~~~lgI~ 108 (808)
|+ +|..|...+-..-.+++++||..
T Consensus 119 ~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~ 198 (1080)
T KOG0437|consen 119 EEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLG 198 (1080)
T ss_pred hhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCC
Confidence 11 12233344445556888999988
Q ss_pred cc---ccCCC-CChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccc---cccCCCC---------------
Q 003601 109 FD---NFGRT-STPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV---EGTCPFE--------------- 166 (808)
Q Consensus 109 ~D---~f~rT-~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v---~g~cp~~--------------- 166 (808)
.| .|+.| -+|+|..+|+|.|++|.+.|.|..+.+-.-||+.+++...|..- +|.-|.+
T Consensus 199 iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~ 278 (1080)
T KOG0437|consen 199 IDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKA 278 (1080)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhh
Confidence 88 47767 38999999999999999999999999999999999998877542 2222210
Q ss_pred -------------------------CC-------------------------------------------------CC--
Q 003601 167 -------------------------GC-------------------------------------------------NY-- 170 (808)
Q Consensus 167 -------------------------~c-------------------------------------------------~~-- 170 (808)
.| |+
T Consensus 279 l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~ 358 (1080)
T KOG0437|consen 279 LSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDL 358 (1080)
T ss_pred ccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhh
Confidence 00 00
Q ss_pred ------------------------------------C------------------------------------CcCCchh
Q 003601 171 ------------------------------------E------------------------------------SARGDQC 178 (808)
Q Consensus 171 ------------------------------------~------------------------------------~~~g~~c 178 (808)
. ..+||.|
T Consensus 359 iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ 438 (1080)
T KOG0437|consen 359 IGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLA 438 (1080)
T ss_pred cCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhh
Confidence 0 0113222
Q ss_pred h--ccC-------------------------------------CCCCc------ccc------------CCCccccCCCC
Q 003601 179 E--NCG-------------------------------------KLLNA------TDL------------KDPKCKVCRNA 201 (808)
Q Consensus 179 e--~cG-------------------------------------~~l~~------~el------------~~p~c~~~g~~ 201 (808)
. .|- ..+.. ++| ..++-.|||..
T Consensus 439 ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGde 518 (1080)
T KOG0437|consen 439 AEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDE 518 (1080)
T ss_pred HHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCc
Confidence 1 010 00000 011 12356799999
Q ss_pred cEEeeccceeEec--cchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCcc------CCCc
Q 003601 202 PQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER------FKEK 273 (808)
Q Consensus 202 ~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~------~~~~ 273 (808)
.++..++|||++. +.++....+.++....+..-.++....+.+||. .|.+||...-|+.+|++. ..+.
T Consensus 519 CiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~----~wacsRsyGLGTrlPWD~qyLvESLSDS 594 (1080)
T KOG0437|consen 519 CIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLG----QWACSRSYGLGTRLPWDEQYLVESLSDS 594 (1080)
T ss_pred eEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHH----hhhhhccccCCCCCCCcHHHHHHhcchh
Confidence 9999999999998 458888888888765443333445556678865 599999999999999873 2334
Q ss_pred eEEEEe---------------------------cccchhhhhccCCc--------------hhHhhhcCCCCCcceEEEE
Q 003601 274 VFYVWF---------------------------DAPIGYVSITSCYT--------------NEWEQWWKNPENVELYQFM 312 (808)
Q Consensus 274 viyVWf---------------------------DA~~~Yis~~~~~~--------------~~~~~~w~~p~d~~~vh~~ 312 (808)
+||.-+ |..++|+.....++ .+|+ ||. |.| +.+.
T Consensus 595 TIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~-Y~Y-PiD---lrvs 669 (1080)
T KOG0437|consen 595 TIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFE-YFY-PID---LRVS 669 (1080)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhh-ccc-cee---eeec
Confidence 444211 23344543221121 1344 565 788 7899
Q ss_pred eeccccchhcHHH---HHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCC
Q 003601 313 GKDNVPFHTVMFP---STLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389 (808)
Q Consensus 313 GkDii~fH~i~~p---a~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~ 389 (808)
|||++..|..|+. +.|.. . ...|+.|.++|||+++++|||||.||+.+.++.++ +||+|+.|+.|+..+.--.
T Consensus 670 GKDLi~NHLtfflynHvAl~~-~--k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaie-KFgad~tRlalAdaGD~ve 745 (1080)
T KOG0437|consen 670 GKDLIPNHLTFFLYNHVALFP-E--KKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIE-KFGADGTRLALADAGDGVE 745 (1080)
T ss_pred cccccccceeEeeeehhhhcc-c--ccCccceeeCceEEecchhhccccCCeeeHHHHHH-HhCccceeeeeecccCCcc
Confidence 9999876654321 11111 1 24799999999999999999999999999999999 7999999999998777778
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHH
Q 003601 390 DTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLK 469 (808)
Q Consensus 390 D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~ 469 (808)
|.||........ +-.|.+.+.-+-.|+... +. +... ......|+-+.+.++.++....+++++..|+
T Consensus 746 DANF~ea~AnAa-----ILRLyt~~ew~eEm~~~~-----s~-LrtG--p~~~FaDrvf~nemN~~i~~t~~aye~~~fk 812 (1080)
T KOG0437|consen 746 DANFVEANANAA-----ILRLYTYVEWIEEMCENR-----SS-LRTG--PASTFADRVFENEMNALIAKTERAYEDTLFK 812 (1080)
T ss_pred cchhHHhcccHH-----HHHHHHHHHHHHHHHhhH-----Hh-hccC--chhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999988754332 234555666555555431 11 1110 1123468899999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCC
Q 003601 470 QGLKTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQP 539 (808)
Q Consensus 470 ~al~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~ 539 (808)
.|++.-+ ++...-..|-.... .. +. -.+++..+.+.+.||+||.||+|+.||+.++-++
T Consensus 813 ~aLK~Gfyd~qaArD~Yrel~g-------~~--mh--~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~ 872 (1080)
T KOG0437|consen 813 DALKYGFYDLQAARDMYRELCG-------EG--MH--RDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKN 872 (1080)
T ss_pred HHHHhhhHHHHHHHHHHHHHhc-------cc--cc--HHHHHHHHHHHHHHHhccchHHHHHHHHHhccCC
Confidence 9998765 55544444433321 00 11 1234556778899999999999999999988653
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-34 Score=334.77 Aligned_cols=337 Identities=15% Similarity=0.143 Sum_probs=250.7
Q ss_pred CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (808)
Q Consensus 20 ~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (808)
.++++.|..+.|||||++||||+|++ +.+|+++|++|+.||+|.++.++||+|++|...|...+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~-iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSA-VIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHH-HHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999984 67999999999999999999999999999999999998899999999999999
Q ss_pred HHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCcee-eceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchh
Q 003601 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLI-ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (808)
Q Consensus 100 ~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy-~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c 178 (808)
+++++|||.+|.|.++++..|...+++++++|.++|++| +..+..|++.. .|..+
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~--~~~~~---------------------- 243 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT--EFGDD---------------------- 243 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch--hhCCC----------------------
Confidence 999999999999999998888899999999999999999 76665555422 22100
Q ss_pred hccCCCCCccccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccc
Q 003601 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (808)
Q Consensus 179 e~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (808)
+..+.+++...+-.- ...+..++.. ..|
T Consensus 244 --------------------~~~vl~ksdG~~~Y~----t~Dia~~~~k---------------------------~~~- 271 (507)
T PRK01611 244 --------------------KDRVLIKSDGTYTYF----TRDIAYHLYK---------------------------FER- 271 (507)
T ss_pred --------------------CCeEEEECCCCccch----HHHHHHHHHH---------------------------Hhh-
Confidence 112223332222110 1111111100 000
Q ss_pred cCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeeccc-cchhcHHHHHhhhCCCCccc
Q 003601 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV-PFHTVMFPSTLLGTGENWTL 337 (808)
Q Consensus 259 ~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDii-~fH~i~~pa~l~a~g~~~~~ 337 (808)
-++.|| +.|.|+. .|..++ +.+.++|.. +
T Consensus 272 ------------~d~~i~----------------------------------V~g~~q~~hf~~~~--~~~~~lg~~--~ 301 (507)
T PRK01611 272 ------------FDRVIY----------------------------------VVGADHHGHFKRLK--AALKALGYD--P 301 (507)
T ss_pred ------------cCEEEE----------------------------------EECCChHHHHHHHH--HHHHHcCCC--c
Confidence 024444 4455542 233333 556677753 3
Q ss_pred Cc-EEEEe---eeee-cCCCccccccCCccChhhhhhcCCCc----------------hhHHHHHHhcCCCCCCcccCHH
Q 003601 338 MK-TISVT---EYLN-YESGKFSKSKGIGVFGNDAKDTNIPV----------------EVWRYYLLTNRPEVSDTLFTWA 396 (808)
Q Consensus 338 p~-~i~~h---g~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~----------------D~lRy~ll~~~~~~~D~~Fs~~ 396 (808)
++ .++.| |++. -+|+|||||+||+|++.|++++.++. |++||++++. ..++|.+|+|+
T Consensus 302 ~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~ 380 (507)
T PRK01611 302 DALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLD 380 (507)
T ss_pred ccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHH
Confidence 32 44445 5555 36889999999999999999943888 9999999986 45899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 003601 397 DLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (808)
Q Consensus 397 ~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~ 476 (808)
.+.+..+.... .+.+...|+.+++.+... .+..+... ...++.+++|+..+..+.+.+.+++++++++.+++++.
T Consensus 381 ~~~~~~~~~~~-yvqYa~aR~~sil~k~~~---~~~~~~~~-~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~ 455 (507)
T PRK01611 381 LALSFEGNNPP-YVQYAHARICSILRKAAE---AGIDLLLA-LLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLY 455 (507)
T ss_pred HHHhhcCCCcH-HHHHHHHHHHHHHHhhhc---cCcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 98765444444 788899999999887211 01111101 11246789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 003601 477 SISSEGNAYLQES 489 (808)
Q Consensus 477 ~l~~~~N~yi~~~ 489 (808)
+|+...|.|++..
T Consensus 456 ~la~~f~~fY~~~ 468 (507)
T PRK01611 456 ELAGAFHSFYNRV 468 (507)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999755
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=5.5e-34 Score=308.75 Aligned_cols=271 Identities=19% Similarity=0.257 Sum_probs=193.5
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchh------------------hHHHHHHHHH
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAME 82 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~h------------------G~~i~~~A~~ 82 (808)
+.+++|+||+ ||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+| |.|+...++.
T Consensus 18 ~~~~~v~tgi-~psG~~HIG~~~e-~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGI-SPSGHIHIGNFRE-VITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCC-CCCCCcccCccHH-HHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 4579999998 5999999999997 788999999999999999999999999 8999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCccccccccccc
Q 003601 83 DNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (808)
Q Consensus 83 ~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (808)
.|+.+ ++++++.+.|++.|+.|||++|.+.+|....+....+.++..|.+++.|..--.+.-=-+..++|+|
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P------- 167 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYP------- 167 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCcee-------
Confidence 99988 9999999999999999999999766666666668999999999999998632111100122233333
Q ss_pred CCCCCCCCCCcCCchhhccCCCCCcc-------ccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCCCC
Q 003601 163 CPFEGCNYESARGDQCENCGKLLNAT-------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235 (808)
Q Consensus 163 cp~~~c~~~~~~g~~ce~cG~~l~~~-------el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 235 (808)
+...|++||+.-.+. .-+...| .||+..+..-+..-
T Consensus 168 -----------~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~g~------------------------- 210 (353)
T cd00674 168 -----------FMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRTGR------------------------- 210 (353)
T ss_pred -----------eeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecCCC-------------------------
Confidence 345677788542111 0122345 36655542111100
Q ss_pred hhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEeec
Q 003601 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315 (808)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkD 315 (808)
| .+.|-+..| ..|. .-..| +-..|+|
T Consensus 211 -------------~--------KL~Wr~dW~---------------------------~rW~---~l~Vd---~E~~GkD 236 (353)
T cd00674 211 -------------G--------KLTWRVDWP---------------------------MRWA---ILGVD---FEPFGKD 236 (353)
T ss_pred -------------c--------ccCCCCCch---------------------------hhhh---hcCCC---EEeeCcc
Confidence 0 112222212 1111 11344 5679999
Q ss_pred cccc---hhcHHHHHhh-hCCCCcccCcEEEEeeeeecCCC-ccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCC
Q 003601 316 NVPF---HTVMFPSTLL-GTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (808)
Q Consensus 316 ii~f---H~i~~pa~l~-a~g~~~~~p~~i~~hg~l~~~G~-KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D 390 (808)
|.-. +.... +++. .+|.+ +| ..++|||++++|. |||||+||+|++.|+++ .+++|++|||+++.....+|
T Consensus 237 h~~~ggs~~~~~-~i~~~ilg~~--~P-~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~-~~~~dalR~~~l~~~~~~~~ 311 (353)
T cd00674 237 HASAGGSYDTGK-EIAREIFGGE--PP-VPVMYEFIGLKGGGKMSSSKGNVITPSDWLE-VAPPEVLRYLYARRKNPEKH 311 (353)
T ss_pred ccccccHHHHHH-HHHHHHhCCC--CC-eEEEeeeEEeCCCCccCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCC
Confidence 8644 32222 3334 56653 55 4478999998776 99999999999999999 59999999999986546789
Q ss_pred cccCHHH
Q 003601 391 TLFTWAD 397 (808)
Q Consensus 391 ~~Fs~~~ 397 (808)
++|+++.
T Consensus 312 i~Fd~~~ 318 (353)
T cd00674 312 IGFDLDI 318 (353)
T ss_pred CCcChhH
Confidence 9999853
No 62
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=9.1e-31 Score=305.16 Aligned_cols=345 Identities=15% Similarity=0.162 Sum_probs=245.4
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHH---------------------
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK--------------------- 79 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~--------------------- 79 (808)
++++.|..+-|+|+|++||||+|++ +.+|+++|+++..||+|.-..-+.|.|..+-.-
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~-~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNA-IIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHH-HHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 5678999999999999999999985 669999999999999996444334433321111
Q ss_pred ---------HHH------------------cCCC------HHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHH
Q 003601 80 ---------AME------------------DNCS------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (808)
Q Consensus 80 ---------A~~------------------~g~~------p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~ 126 (808)
++. +.-+ .+.+++...+.|++++++|||.||.|....+..+...+..
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~ 269 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPK 269 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHH
Confidence 100 0111 2345667788999999999999998887666677788999
Q ss_pred HHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEee
Q 003601 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (808)
Q Consensus 127 ~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~ 206 (808)
+++.|.++|++|++ +..|.+.. + +|+ + + ...+..++
T Consensus 270 v~~~L~~~g~~~~~-Ga~~~~~~------~-----------------~~d------------~---~-----~~~vl~ks 305 (566)
T TIGR00456 270 VLEDLKEKGLVVED-GALWLDLT------L-----------------FGD------------K---D-----KDRVLQKS 305 (566)
T ss_pred HHHHHHHCCCEEEc-CCEEEEcc------c-----------------ccC------------C---C-----CCeEEEEC
Confidence 99999999999977 66665421 0 010 0 0 11233344
Q ss_pred ccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhh
Q 003601 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (808)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yi 286 (808)
...+-.-... +..+..+ + .| | .+++||||-....+|+
T Consensus 306 DGt~~Y~t~D----iA~~~~k-----------------~----------~~----~--------~d~iI~V~g~~q~~h~ 342 (566)
T TIGR00456 306 DGTYLYLTRD----IAYHLDK-----------------L----------ER----G--------FDKMIYVWGSDHHLHI 342 (566)
T ss_pred CCCceechhh----HHHHHHH-----------------H----------hc----C--------CCEEEEEecCcHHHHH
Confidence 3333222211 1111110 0 00 0 1455666544444443
Q ss_pred hhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChh-
Q 003601 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGN- 365 (808)
Q Consensus 287 s~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~- 365 (808)
.. ++ +.++++|.+ +|.++.+|+|.+++|.|||||+||+|++.
T Consensus 343 ~~---------------------------------v~--~~l~~lG~~--~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~d 385 (566)
T TIGR00456 343 AQ---------------------------------FF--AILEKLGFY--KKKELIHLNFGMVPLGSMKTRRGNVISLDN 385 (566)
T ss_pred HH---------------------------------HH--HHHHHcCCC--CCCceEEEEEEEEECCCCCccCCceeeHHH
Confidence 32 22 678888864 68899999999999999999999999998
Q ss_pred ----------------------hhhhcCCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhC
Q 003601 366 ----------------------DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (808)
Q Consensus 366 ----------------------d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k 423 (808)
++++ .+|.|++|||+++..+ .+|.+|+++.+.+ .|++++++++|+++|+++++++
T Consensus 386 ll~~~~~ra~~~i~~~~~~~~~~~~~-~vg~dAvRy~~L~~~~-~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SIlrK 462 (566)
T TIGR00456 386 LLDEASKRAGNVITIKNDLEEEDVAD-AVGIGAVRYFDLSQNR-ETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRK 462 (566)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHH-HhcccceeeHHhhcCC-CCCceecHHHHhc-cCCCCchhHHHHHHHHHHHHHh
Confidence 5555 5889999999999774 8999999998877 4899999999999999999998
Q ss_pred CCCCCCCCcCCCCC--CcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhhccCCh
Q 003601 424 PPGQGYGSIVPDAN--GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQ 499 (808)
Q Consensus 424 ~~~~~~~g~~p~~~--~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~ 499 (808)
. ..+.++... ....++.+..|+..+..+.+.+.+++++++++.++++++++++.+|+|++.. |.+..+++
T Consensus 463 ~----~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~--~Vl~~~~~ 534 (566)
T TIGR00456 463 A----DIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC--PVLDAENE 534 (566)
T ss_pred c----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC--ccCCCCCH
Confidence 2 222221110 0112455778999999999999999999999999999999999999999987 45543343
No 63
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.3e-31 Score=306.52 Aligned_cols=268 Identities=18% Similarity=0.248 Sum_probs=185.1
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhH--------------------HHHHHHH
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--------------------ATETKAM 81 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~--------------------~i~~~A~ 81 (808)
..++|++|+ ||||.|||||+++ ++.+|+++|++|++|++|.|++|+|+||. |+...+.
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e-~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFRE-VARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 348888887 7999999999997 78899999999999999999999999962 3333344
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccc
Q 003601 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG 161 (808)
Q Consensus 82 ~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g 161 (808)
..|+ +++++++|.+.|++.|+.|||++|.+.+|....+....+.+...|.+++.|..--.+.-=....++|+|
T Consensus 101 p~G~-~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P------ 173 (510)
T PRK00750 101 PFGC-HESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSP------ 173 (510)
T ss_pred CCCC-chHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeee------
Confidence 4455 899999999999999999999999665555444457788888888888887632211111123333333
Q ss_pred cCCCCCCCCCCcCCchhhccCCCCCcc----cc----CCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCC
Q 003601 162 TCPFEGCNYESARGDQCENCGKLLNAT----DL----KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGS 233 (808)
Q Consensus 162 ~cp~~~c~~~~~~g~~ce~cG~~l~~~----el----~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~ 233 (808)
+...|++||+.+... +. +...| .||+..+.--++.- -|
T Consensus 174 ------------~~pic~~cg~~~~~~~~~~d~~~~~v~y~~-~cG~~~~~~~~~g~-~K-------------------- 219 (510)
T PRK00750 174 ------------FLPICPKCGKVLTTPVISYDAEAGTVTYDC-ECGHEGEVPVTGGH-GK-------------------- 219 (510)
T ss_pred ------------eeeeCCCCCccceEEEEEEeCCCCEEEEEc-CCCCEEEEecCCCC-cc--------------------
Confidence 345677888765321 11 12233 36655542111100 01
Q ss_pred CChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEe
Q 003601 234 WSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313 (808)
Q Consensus 234 ~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~G 313 (808)
+.|-+ .|+..|. .-..| +-..|
T Consensus 220 -------------------------L~Wr~---------------------------dW~~rW~---~l~Vd---~e~~G 241 (510)
T PRK00750 220 -------------------------LQWKV---------------------------DWPMRWA---ALGVD---FEPFG 241 (510)
T ss_pred -------------------------cCCCC---------------------------CcHHHHH---HcCCC---EEeeC
Confidence 11221 1222222 11345 67899
Q ss_pred ecccc-chhcHHHHHhh-hCCCCcccCcEEEEeeeeecC-CCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCC
Q 003601 314 KDNVP-FHTVMFPSTLL-GTGENWTLMKTISVTEYLNYE-SGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (808)
Q Consensus 314 kDii~-fH~i~~pa~l~-a~g~~~~~p~~i~~hg~l~~~-G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D 390 (808)
+||.. .|.. .-.++. .+|.+ +|.. ++|||++.+ |+|||||+||+|++.|+++ .+++|++|||++...+..+|
T Consensus 242 kDh~~~s~~~-~~~i~~~ilg~~--~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~-~~~pd~lR~~l~~~~~~~~~ 316 (510)
T PRK00750 242 KDHASASYDT-SKKIAREILGGE--PPEP-FVYELFLDKKGEKISKSKGNVITIEDWLE-YAPPESLRLFMFARPKPAKR 316 (510)
T ss_pred cccCcchHHH-HHHHHHHHcCCC--CCee-eeeeeEEeCCCCcccccCCCccCHHHHHH-HCCHHHHHHHHHhCCCCCCC
Confidence 99987 3332 223444 56653 5654 789999987 9999999999999999999 69999999999877778899
Q ss_pred cccCH
Q 003601 391 TLFTW 395 (808)
Q Consensus 391 ~~Fs~ 395 (808)
++|++
T Consensus 317 ~~f~~ 321 (510)
T PRK00750 317 LDFDV 321 (510)
T ss_pred CcccH
Confidence 99998
No 64
>TIGR02222 chap_CsaA export-related chaperone CsaA. This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.
Probab=99.95 E-value=5.9e-28 Score=218.22 Aligned_cols=103 Identities=25% Similarity=0.464 Sum_probs=96.6
Q ss_pred CceeeeEEEEEEEEEEeCCCCCc-eEEEEEEcCCC-ccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEe
Q 003601 646 SIARLDIRVGKITKVQKHPDADA-LYVEEIDVGEV-QPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVL 723 (808)
Q Consensus 646 ~~~~~~~rvg~i~~~~~hp~a~~-l~~~~vd~G~~-~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll 723 (808)
+|.++|+|||+|+++++||+++| ||+++||+|++ ++|||+||++.+|+|++|+|++|++++||||++|||++||||||
T Consensus 3 ~f~kldlrvg~I~~~~~~p~a~k~L~~l~vd~G~~~~~r~ivsgi~~~~~~e~L~gk~v~~v~Nl~p~k~~G~~S~gMil 82 (107)
T TIGR02222 3 DFEKLDLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVVNFPPKQIAGFLSEVLVL 82 (107)
T ss_pred hhhhhhheeEEEEEEeecCCcccceeEEEEEecCcCCcceEehhhhhhCCHHHhCCCeEEEEECCCCceeCCccccEEEE
Confidence 58899999999999999999998 99999999964 46999999999999999999999999999999999999999999
Q ss_pred eeecCCCCeEEEEcCCCCCCCCceee
Q 003601 724 CASTSDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 724 ~~~~~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
|++++++ .+.++.|+.++++|++|+
T Consensus 83 ~~~~~~~-~~~l~~~~~~~~~G~~v~ 107 (107)
T TIGR02222 83 GVIDEQG-RVVLLQPDRPVPNGTKIA 107 (107)
T ss_pred EEECCCC-eEEEecCCCCCCCcCCcC
Confidence 9987653 699999999999999984
No 65
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins. CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.
Probab=99.94 E-value=1.8e-27 Score=215.71 Aligned_cols=102 Identities=28% Similarity=0.493 Sum_probs=96.8
Q ss_pred CceeeeEEEEEEEEEEeCCCC-CceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEee
Q 003601 646 SIARLDIRVGKITKVQKHPDA-DALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLC 724 (808)
Q Consensus 646 ~~~~~~~rvg~i~~~~~hp~a-~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~ 724 (808)
+|.++|+|||+|+++++||++ ++||+++||+|.+++|||+||++++|+||+|+|++|++++||||+||||++|+|||||
T Consensus 5 ~f~kldi~vG~V~~~~~~p~a~~kL~~~~Vd~G~~~~r~ivsg~~~~~~~e~l~gk~v~~v~Nlkp~k~~G~~S~gm~l~ 84 (107)
T cd02798 5 DFEKVDLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNFPPKQIAGVLSEVLVLG 84 (107)
T ss_pred HceeeeeEEEEEEEEEECCCcccceEEEEEEecCccceehhhhhhhcCCHHHhcCCcEEEEeCCCCceecceeccEEEEE
Confidence 689999999999999999999 9999999999986789999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEcCCCCCCCCcee
Q 003601 725 ASTSDNTKVELVEPPKSAKIGERV 748 (808)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~G~~v 748 (808)
+++++ +.++++.||.++++|+||
T Consensus 85 ~~~~~-~~~~~~~~~~~~~~G~~i 107 (107)
T cd02798 85 ADDEG-GEVVLLVPDREVPNGAKV 107 (107)
T ss_pred EEcCC-CcEEEecCCCCCCCcCCC
Confidence 98764 368999999999999986
No 66
>PRK10089 tRNA-binding protein; Provisional
Probab=99.94 E-value=3.4e-27 Score=215.48 Aligned_cols=103 Identities=27% Similarity=0.443 Sum_probs=97.6
Q ss_pred CceeeeEEEEEEEEEEeCCCCCce-EEEEEEcCCC-ccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEe
Q 003601 646 SIARLDIRVGKITKVQKHPDADAL-YVEEIDVGEV-QPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVL 723 (808)
Q Consensus 646 ~~~~~~~rvg~i~~~~~hp~a~~l-~~~~vd~G~~-~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll 723 (808)
+|.++|+|||+|+++++||++++| |+++||+|.+ +.|||+||++.+|++++|+|++|++++||||++|||++||||||
T Consensus 8 ~f~kldlrvg~I~~~~~~p~a~kL~~~l~vd~G~~~~~r~i~sgl~~~~~~eel~gk~v~~v~Nlkp~~~~G~~S~gmil 87 (112)
T PRK10089 8 DFEKVDIRVGTIVEAEPFPEARKPAYKLWIDFGEEIGVKQSSAQITPHYTPEELIGKQVVAVVNFPPKQIAGFMSEVLVL 87 (112)
T ss_pred HhhhhheeeEEEEEEEEcCCcCcceEEEEEEecCccCcceEehhhcccCCHHHHccCcEEEEECCCcceecCccccEEEE
Confidence 689999999999999999999999 9999999975 48999999999999999999999999999999999999999999
Q ss_pred eeecCCCCeEEEEcCCCCCCCCceee
Q 003601 724 CASTSDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 724 ~~~~~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
|++++++ .++++.|+.++++|+||.
T Consensus 88 ~~~~~~~-~~~l~~p~~~~~~G~~i~ 112 (112)
T PRK10089 88 GFEDEDG-EVVLLTPDRPVPNGVKLV 112 (112)
T ss_pred EEEcCCC-eEEEecCCCCCCCcCCcC
Confidence 9987665 689999999999999984
No 67
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.94 E-value=6.1e-27 Score=265.77 Aligned_cols=266 Identities=18% Similarity=0.254 Sum_probs=172.0
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchh------------------hHHHHHHHHHc
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAMED 83 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~h------------------G~~i~~~A~~~ 83 (808)
.+++|+||++ |||.+||||+++ ++.+|+++|++|++|++|.|++|+|+| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e-~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFRE-VITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhh-hhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 4799999987 999999999998 689999999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCccccccCCCCCh----HHHHHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccc
Q 003601 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP----QQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (808)
Q Consensus 84 g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~----~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (808)
|++ ..++++|.+.|.+.|+.|||+++.. ++++- .|.+.+..++++-.+-..|...... -+..++|+|
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e~~-s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~---~~~~~~~~P---- 166 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPEFI-RASKQYTSGLYASQIKIALDHRKEISEILNEYRT---SKLEENWYP---- 166 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEEEE-EHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcC---CccCCCcee----
Confidence 997 9999999999999999999998744 44432 2223333222221111111111000 012223322
Q ss_pred cccCCCCCCCCCCcCCchhhccCCCCCcc------ccCCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcCCCCCC
Q 003601 160 EGTCPFEGCNYESARGDQCENCGKLLNAT------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGS 233 (808)
Q Consensus 160 ~g~cp~~~c~~~~~~g~~ce~cG~~l~~~------el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~ 233 (808)
+...|++||+.+.+. .-+...| .||+..+.--+..-- || .
T Consensus 167 --------------~~pic~~cGrv~~~~~~~~~~~~v~Y~c-~cG~~g~~~~~~g~~-KL------------------~ 212 (515)
T TIGR00467 167 --------------ISVFCENCGRDTTTVNNYDNEYSIEYSC-ECGNQESVDIYTGAI-KL------------------P 212 (515)
T ss_pred --------------eeeecCCcCccCceEEEecCCceEEEEc-CCCCEEEEeecCCCc-cc------------------C
Confidence 345677788765321 1123356 377665532211100 11 1
Q ss_pred CChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhhcCCCCCcceEEEEe
Q 003601 234 WSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313 (808)
Q Consensus 234 ~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~G 313 (808)
|+ +..| ..|..+ ..| +--.|
T Consensus 213 Wk---------------------------vdW~---------------------------~RW~~l---gV~---~Ep~G 232 (515)
T TIGR00467 213 WR---------------------------VDWP---------------------------ARWKIE---KVT---FEPAG 232 (515)
T ss_pred CC---------------------------CCcH---------------------------hhHhhh---Ccc---cccCC
Confidence 22 1111 111110 233 23367
Q ss_pred ecccc----chhcHHHHHhhhCCCCcccCcEEEEeeeeec--CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCC
Q 003601 314 KDNVP----FHTVMFPSTLLGTGENWTLMKTISVTEYLNY--ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE 387 (808)
Q Consensus 314 kDii~----fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~~--~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~ 387 (808)
|||.- +-.-...|. .++|. .+|.. +.++|+.+ +|+|||||+||+|+++|+++ .+++|++||++++ ..+
T Consensus 233 kDH~~~ggsy~~~~~ia~-~~l~~--~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~-~~~pdalR~~~l~-~~~ 306 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAK-EIFQY--SPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLE-VYTPEITRFLFAR-TKP 306 (515)
T ss_pred CCccCccCCchhHHHHHH-HHhCC--CCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHH-HcCHHHHHHHHhc-cCC
Confidence 88753 222223232 45553 24543 44666544 57799999999999999999 5999999999887 556
Q ss_pred CCCcccCHHHH
Q 003601 388 VSDTLFTWADL 398 (808)
Q Consensus 388 ~~D~~Fs~~~l 398 (808)
.++++|+++.+
T Consensus 307 ~~~ldFd~~~l 317 (515)
T TIGR00467 307 EFHISFDLDVI 317 (515)
T ss_pred CCCCcCCHHHH
Confidence 89999999977
No 68
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=7.2e-24 Score=246.41 Aligned_cols=336 Identities=13% Similarity=0.119 Sum_probs=230.6
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH------------------
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME------------------ 82 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~------------------ 82 (808)
++++.|--.-|.|+|++||||+|++ +.+|+++|.++..||+|.-..-+.|.|..+-.-+..
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~a-iiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 190 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRST-MIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL 190 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhH-HHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHH
Confidence 4678888888999999999999996 559999999999999997666666666533222110
Q ss_pred -----------------------------cCCC-----HHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHH
Q 003601 83 -----------------------------DNCS-----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIF 128 (808)
Q Consensus 83 -----------------------------~g~~-----p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f 128 (808)
.|-. .+.+++...+.|++++++|||.||.|.. +..|...+.+++
T Consensus 191 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~--es~~~~~~~~v~ 268 (562)
T PRK12451 191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQG--EAFYNDLMEDFI 268 (562)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecc--hHhhhhhHHHHH
Confidence 0100 2344666778999999999999995543 335667789999
Q ss_pred HHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeecc
Q 003601 129 KKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208 (808)
Q Consensus 129 ~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~ 208 (808)
+.|.++|++|+..+..|.+.. + +|+ ...+..|+..
T Consensus 269 ~~L~~~g~~~e~dGa~~~~~~------~-----------------~g~----------------------~~~vl~ksDG 303 (562)
T PRK12451 269 GILEEHDLLEESEGALVVNLE------E-----------------EGM----------------------PPCLIRKSDG 303 (562)
T ss_pred HHHHHCCCEEecCCeEEEEec------c-----------------cCC----------------------CceEEEeCCC
Confidence 999999999988777765321 0 000 1123334333
Q ss_pred ceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhh
Q 003601 209 HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSI 288 (808)
Q Consensus 209 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~ 288 (808)
.+-.-... +..+... + .| +| .++.||||-....+|+..
T Consensus 304 t~~Y~t~D----iA~~~~k-----------------~----------~~---~~--------~d~~IyV~g~dq~~h~~~ 341 (562)
T PRK12451 304 ATIYATRD----LTAALYR-----------------Q----------NT---FG--------FDKALYVVGPEQSLHFNQ 341 (562)
T ss_pred ccccchhH----HHHHHHH-----------------h----------hc---cC--------CCEEEEEeCCcHHHHHHH
Confidence 33211111 1111100 0 00 01 145555554444444322
Q ss_pred ccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCc--EEEEeeeeecCCCccccccCCccChhh
Q 003601 289 TSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK--TISVTEYLNYESGKFSKSKGIGVFGND 366 (808)
Q Consensus 289 ~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~--~i~~hg~l~~~G~KMSKS~GN~I~~~d 366 (808)
++ +++.++|.. .+. .++.+|+++.+|+||||.+||+|+++|
T Consensus 342 ---------------------------------l~--~~~~~lg~~--~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~d 384 (562)
T PRK12451 342 ---------------------------------FF--TVLKKLGYT--WVDGMEHVPFGLILKDGKKMSTRKGRVVLLEE 384 (562)
T ss_pred ---------------------------------HH--HHHHHcCCC--cccCeEEEeeeeEecCCCCCcCCCCCeeEHHH
Confidence 22 456666653 233 346668888899999999999999999
Q ss_pred hhhc------------------------CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003601 367 AKDT------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIA 422 (808)
Q Consensus 367 ~l~~------------------------~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~ 422 (808)
++++ ..+.+++||++++..+ .++++|+|+.+.+. +++-.-++.+.+.|++++++
T Consensus 385 Lldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~-~g~t~pYiQYa~AR~~SIlr 462 (562)
T PRK12451 385 VLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLKF-EGETGPYVQYTHARACSILR 462 (562)
T ss_pred HHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCC-CCCceECHHHHhCc-CCCccHHHHHHHHHHHHHHH
Confidence 9984 2668999999999655 89999999997553 22333489999999999999
Q ss_pred CCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003601 423 KPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (808)
Q Consensus 423 k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (808)
|.. .+ .........++.+..|+..+..+.+.+.+++++++++.++.+++++++.+|+|++..+
T Consensus 463 ka~---~~--~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~ 525 (562)
T PRK12451 463 KES---VE--FETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVR 525 (562)
T ss_pred hcC---CC--ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 831 11 1000001124567889999999999999999999999999999999999999998765
No 69
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.
Probab=99.93 E-value=1.8e-25 Score=202.77 Aligned_cols=105 Identities=70% Similarity=1.124 Sum_probs=98.4
Q ss_pred cCceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEee
Q 003601 645 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLC 724 (808)
Q Consensus 645 ~~~~~~~~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~ 724 (808)
+||.++|+|||+|+++++||++++|++++||+|.+++|||+||+.++|++++|+|++|++++||+|++|+|+.|||||||
T Consensus 1 ~~f~~~~i~vg~I~~~~~~p~s~kL~~l~Vd~G~~~~~~Ivsg~~~~~~~~~~~g~~v~~l~nl~~~~~~G~~S~GMll~ 80 (105)
T cd02799 1 VDPSRLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLCNLKPRKMRGVKSQGMVLC 80 (105)
T ss_pred CCceEEEEEEEEEEEEEecCCCCccEEEEEEeCCCcEEEEEcCccccCCHHHhCCCEEEEEEeeccceECCeeeceEEEE
Confidence 36899999999999999999999999999999976789999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEcCCCCCCCCceee
Q 003601 725 ASTSDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 725 ~~~~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
+.+.++..+.+++||.++++|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~G~~i~ 105 (105)
T cd02799 81 ASNADHEKVELLEPPEGAKPGERVT 105 (105)
T ss_pred eccCCCCcEEEEECCCCCCCCCEeC
Confidence 9876544689999999999999984
No 70
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.92 E-value=2.8e-24 Score=220.61 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=112.8
Q ss_pred EEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003601 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (808)
Q Consensus 24 ~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (808)
+.|--..|+|||++||||+|+ ++.+|+++|++|+.|++|.+++++||||++|...|.+.+. ++++++.+.+.|+++++
T Consensus 2 v~ve~~spN~~~~~HiGH~R~-~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRN-AIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETYG 79 (212)
T ss_pred eEEEecCCCCCCCccccccHH-HHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556678899999999999998 5779999999999999999999999999999999977644 89999999999999999
Q ss_pred hcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeeccCCC
Q 003601 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (808)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~ 150 (808)
+|||++|.|.++++. ...++++++.|.++|++|+..+.+|||+.+
T Consensus 80 ~L~i~~d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 80 RLDVRFDVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HhCCcCceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 999999999999954 889999999999999999999888887653
No 71
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=7.1e-23 Score=234.86 Aligned_cols=340 Identities=15% Similarity=0.162 Sum_probs=229.1
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHH----------------------
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK---------------------- 79 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~---------------------- 79 (808)
+++.|--.-|.|+|++||||+|++ |.+|+++|.++..||+|.-..-+.|.|.-|-.-
T Consensus 117 ~kV~iE~sSaNptkplHiGHlR~a-iiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~l 195 (577)
T COG0018 117 KKVVIEYSSANPTGPLHIGHLRNA-IIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYL 195 (577)
T ss_pred CEEEEEEeCCCCCCCcccchhhhh-HHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHH
Confidence 578887788999999999999996 569999999999999996666666665432211
Q ss_pred ----------HHH-cCC---------------CH-----HHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHH
Q 003601 80 ----------AME-DNC---------------SP-----KEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIF 128 (808)
Q Consensus 80 ----------A~~-~g~---------------~p-----~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f 128 (808)
+++ .+. .+ +.+++.....|++++.+|||.+|.|...++..+...+..++
T Consensus 196 g~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~vv 275 (577)
T COG0018 196 GEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKVV 275 (577)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHHH
Confidence 111 110 00 12677788899999999999999998888778888899999
Q ss_pred HHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeecc
Q 003601 129 KKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208 (808)
Q Consensus 129 ~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~ 208 (808)
..|.++|++|+..+... +.-..|- .+|+. ...+..++..
T Consensus 276 ~~L~~~~~~~e~~GA~~--vdl~~~~------------------~~gd~---------------------~~~vl~KSDG 314 (577)
T COG0018 276 EDLEEKGLLYEDDGALV--VDLLKFK------------------KFGDD---------------------KDRVLQKSDG 314 (577)
T ss_pred HHHHhcCCEeeeCCeEE--Eehhhhh------------------hcCCC---------------------CCeEEEEcCC
Confidence 99999999998443331 1101000 00000 0112222222
Q ss_pred ceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhh
Q 003601 209 HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSI 288 (808)
Q Consensus 209 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~ 288 (808)
.+-.-.. .+..++.
T Consensus 315 t~lY~t~----DIAy~~~-------------------------------------------------------------- 328 (577)
T COG0018 315 TYLYFTR----DIAYHLY-------------------------------------------------------------- 328 (577)
T ss_pred Ceeeehh----HHHHHHH--------------------------------------------------------------
Confidence 2211111 1111110
Q ss_pred ccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcccCcEE-EEeee--eec-CCCccccccCCccCh
Q 003601 289 TSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTI-SVTEY--LNY-ESGKFSKSKGIGVFG 364 (808)
Q Consensus 289 ~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i-~~hg~--l~~-~G~KMSKS~GN~I~~ 364 (808)
.++ + .+| .+|+++|.||--+-.-+| +.+..+|+. .++.+ .+++| +.. +|.||||..|++|+.
T Consensus 329 ------K~~--~--~~d-~~IyV~gadq~~~~~ql~-~~l~~~g~~--~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl 394 (577)
T COG0018 329 ------KFE--R--GFD-KLIYVLGADQHGHFKQLK-AVLELLGYG--PDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTL 394 (577)
T ss_pred ------HHh--c--CCC-EEEEEeCCcchhHHHHHH-HHHHHhcCC--CccceEEEEEEeeeECCCCccccccCCceEEH
Confidence 000 1 112 235555555532222223 445556664 34334 44444 332 688999999999999
Q ss_pred hhhhhcCCC----------------------chhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003601 365 NDAKDTNIP----------------------VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIA 422 (808)
Q Consensus 365 ~d~l~~~~~----------------------~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~ 422 (808)
+|++++ .+ .|++||++++.++ .++++|+|+.+.+.- ++.+.++++...|++++++
T Consensus 395 ~dllde-~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfe-gNt~pYvQYA~ARi~SIlr 471 (577)
T COG0018 395 DDLLDE-AGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFE-GNTAPYVQYAHARICSILR 471 (577)
T ss_pred HHHHHH-HHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhcc-CCCchhHHHHHHHHHHHHH
Confidence 999983 66 8999999999665 799999999998854 4899999999999999999
Q ss_pred CCCCCCCCCcCCCCC---CcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003601 423 KPPGQGYGSIVPDAN---GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (808)
Q Consensus 423 k~~~~~~~g~~p~~~---~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (808)
|.... ..+... .......+.+|+..+..+...+.++.++++++..+.++.+|+..+|+|++.++
T Consensus 472 ka~e~----~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~ 538 (577)
T COG0018 472 KAGED----ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP 538 (577)
T ss_pred hcccc----ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCC
Confidence 84211 111110 01122336889999999999999999999999999999999999999999865
No 72
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.
Probab=99.91 E-value=2.9e-24 Score=202.56 Aligned_cols=102 Identities=34% Similarity=0.579 Sum_probs=96.9
Q ss_pred CceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEeee
Q 003601 646 SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCA 725 (808)
Q Consensus 646 ~~~~~~~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~~ 725 (808)
+|.++|+|||+|+++++||++++||+++||+|. +.||||||+.++|.+++|+|++|++++||+|++|||+.|+|||||+
T Consensus 36 ~f~kldi~Vg~I~eve~hp~adkL~v~~Vd~G~-~~~qIvsg~~~~~~~~~l~G~~v~~~~nlkp~k~~Gv~S~GMlls~ 114 (137)
T TIGR00399 36 DFEKVDLRVGKILKAERVEKSDKLLKLKLDLGD-EKRQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGMILAA 114 (137)
T ss_pred hceeeeeEEEEEEEEeecCCCCcceEEEEEeCC-ceEEEEeCcccCcCHhHcCCCEEEeeEEecCccCCCeEeccEEEEE
Confidence 799999999999999999999999999999997 4699999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEcCCCCCCCCceee
Q 003601 726 STSDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 726 ~~~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
.++++ .++|+.||.++++|++|.
T Consensus 115 ~~~~~-~~~l~~~~~~~~~G~~i~ 137 (137)
T TIGR00399 115 EDDGK-VLFLLSPDQEAIAGERIK 137 (137)
T ss_pred ecCCC-eEEEecCCCCCCCcCCcC
Confidence 87665 789999999999999973
No 73
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....
Probab=99.91 E-value=3e-24 Score=190.97 Aligned_cols=95 Identities=42% Similarity=0.647 Sum_probs=87.7
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEeeeecCCCC
Q 003601 652 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNT 731 (808)
Q Consensus 652 ~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~~~~~~~~ 731 (808)
||||+|+++++||++||||+++||+|+++ |||+||+++++.+++|+|+.+++++|++|++|+|+.|||||||+++.+..
T Consensus 1 i~vg~I~~~~~hp~sdkL~~~~Vd~G~~~-~~Ivsg~~n~~~~~~lv~~~~~~v~n~~~~~i~Gv~SeGMlls~~e~~~~ 79 (95)
T PF01588_consen 1 IRVGKILEVEPHPNSDKLYVLKVDIGEEE-RQIVSGAKNVYEPEVLVGKKVVVVANLKPRKIRGVESEGMLLSASELGDG 79 (95)
T ss_dssp EEEEEEEEEEEETTSSSEEEEEEESSSSE-EEEEESCTTTSTHHHHTTTEEEEETTSCBEEETTEEEESEE-EEECSTSS
T ss_pred CEEEEEEEEEECCCCCEEEEEEEEeCCce-EEEEeccccccChhhhcceeEEEEEccCCcEEEeccCCEEEEEeeccCCC
Confidence 79999999999999999999999999866 99999999999999999999999999999999999999999999973345
Q ss_pred eEEEEcCCCCCCCCce
Q 003601 732 KVELVEPPKSAKIGER 747 (808)
Q Consensus 732 ~~~~l~~~~~~~~G~~ 747 (808)
...++.+|+++|+|++
T Consensus 80 ~~~ll~~~~~~~~G~~ 95 (95)
T PF01588_consen 80 SVGLLVLPDDAPPGED 95 (95)
T ss_dssp EEEEEEESSTS-TTSB
T ss_pred CEEEEECCCCCCCCCC
Confidence 7889999999999986
No 74
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.
Probab=99.91 E-value=2.7e-24 Score=195.18 Aligned_cols=101 Identities=37% Similarity=0.662 Sum_probs=96.0
Q ss_pred CceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEeee
Q 003601 646 SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCA 725 (808)
Q Consensus 646 ~~~~~~~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~~ 725 (808)
+|.++|+|||+|+++++||++++||+++||+|. ++|||+||++++|.+++++|++|++++||+|++|+|+.|+|||||+
T Consensus 5 ~~~~ldi~vg~I~~~~~~p~a~kL~~~~vd~G~-~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~GMl~s~ 83 (105)
T cd02800 5 DFAKVDLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKFYPPEELVGKKVVVVANLKPRKLRGVESQGMILAA 83 (105)
T ss_pred HceeeeEEEEEEEEEEecCCCCcceEEEEEeCC-eEEEEEeCcccccCHhHhccCceEeEeeECCccCCCeEeceEEEEe
Confidence 588999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEcCCCCCCCCceee
Q 003601 726 STSDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 726 ~~~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
.++ +.++|+.||.++++|+||.
T Consensus 84 ~~~--~~~~l~~~~~~~~~G~~i~ 105 (105)
T cd02800 84 EDG--GKLKLLTPDEEVEPGSRVS 105 (105)
T ss_pred cCC--CeEEEEeCCCCCCCcCCcC
Confidence 876 4789999999999999973
No 75
>COG0073 ARC1 EMAP domain [General function prediction only]
Probab=99.90 E-value=5.1e-24 Score=197.90 Aligned_cols=103 Identities=32% Similarity=0.566 Sum_probs=95.4
Q ss_pred CceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCC-ccEEEEeCCCCCCChhhcCCCEEEEeee---cccceecccccceE
Q 003601 646 SIARLDIRVGKITKVQKHPDADALYVEEIDVGEV-QPRTVVSGLVKHIPLEEMQERMVCVLCN---LKPVAMRGIKSHAM 721 (808)
Q Consensus 646 ~~~~~~~rvg~i~~~~~hp~a~~l~~~~vd~G~~-~~r~i~sg~~~~~~~~~l~g~~v~~~~n---lk~~~~~g~~S~gm 721 (808)
+|.+++||||+|+++++||+||||++++||+|++ ++||||||++++|+++.++++++.+++| |||++|||+.|+||
T Consensus 15 ~~~~~~l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~~~~ikp~klrG~~S~GM 94 (123)
T COG0073 15 DFAKVDLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNGGKLKPAKLRGVESEGM 94 (123)
T ss_pred ccccCCeEEEEEEEeEECCCCCeeEEEEEEcCCCCcEEEEEcCCccccCCceeeeeeEEEEeCCCcccceeecCcccceE
Confidence 8999999999999999999999999999999975 4899999999999999999999999999 99999999999999
Q ss_pred EeeeecCCCC--eEEEEcCCCCCCCCcee
Q 003601 722 VLCASTSDNT--KVELVEPPKSAKIGERV 748 (808)
Q Consensus 722 ll~~~~~~~~--~~~~l~~~~~~~~G~~v 748 (808)
|||+.+.+.. ...|+.+|.++++|+++
T Consensus 95 ics~~e~~~~~~~~~il~~~~~~~~g~~~ 123 (123)
T COG0073 95 LLSAEELGLSDENVGILTLDEGVPPGTKV 123 (123)
T ss_pred EEEcccCCCccccceEEeCCCCCCCCCCC
Confidence 9999875432 47799999999999864
No 76
>PLN02286 arginine-tRNA ligase
Probab=99.90 E-value=1.6e-21 Score=227.03 Aligned_cols=341 Identities=12% Similarity=0.086 Sum_probs=229.9
Q ss_pred CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----cC-------C---
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DN-------C--- 85 (808)
Q Consensus 20 ~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~----~g-------~--- 85 (808)
+++++.|--.-|.|+|++||||+|++ +.+|+++|.++..||+|.-..-+.|.|..+-.-+.. .+ .
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsa-iiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRST-IIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccch-hhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 44678888888999999999999996 559999999999999997766666666543322211 00 0
Q ss_pred ---------------C------------------------HHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHH
Q 003601 86 ---------------S------------------------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (808)
Q Consensus 86 ---------------~------------------------p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~ 126 (808)
+ ++.+++.....|++.+.+|||.+|.+ .+..|...+.+
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 0 12345556678999999999999973 33356677899
Q ss_pred HHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEee
Q 003601 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (808)
Q Consensus 127 ~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~ 206 (808)
+++.|.++|++|+..+..|.+- .+. ....+..++
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~l------~~~----------------------------------------~~~~vl~ks 304 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIFV------EGF----------------------------------------DIPLIVVKS 304 (576)
T ss_pred HHHHHHHCCCEEeeCCceEeec------cCC----------------------------------------CCceEEEEC
Confidence 9999999999998877666421 100 001122333
Q ss_pred ccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhh
Q 003601 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (808)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yi 286 (808)
...+- .+...|..++... . .|| .++.||||-....+|+
T Consensus 305 DGt~t----Y~t~DIA~~~~k~------------------~------------~~~--------~d~~IyVvg~~q~~hf 342 (576)
T PLN02286 305 DGGFN----YASTDLAALWYRL------------------N------------EEK--------AEWIIYVTDVGQQQHF 342 (576)
T ss_pred CCchh----hHHHHHHHHHHHH------------------h------------ccC--------CCEEEEEEeCcHHHHH
Confidence 33321 1122222222110 0 011 2456666644444444
Q ss_pred hhccCCchhHhhhcCCCCCcceEEEEeeccccchhcHHHHHhhhCCCCcc-cC--cEEEEeeeee-cCCCccccccCCcc
Q 003601 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT-LM--KTISVTEYLN-YESGKFSKSKGIGV 362 (808)
Q Consensus 287 s~~~~~~~~~~~~w~~p~d~~~vh~~GkDii~fH~i~~pa~l~a~g~~~~-~p--~~i~~hg~l~-~~G~KMSKS~GN~I 362 (808)
... + +++.++|..+. .. -.++.+|+++ .+|+||||.+||+|
T Consensus 343 ~~v---------------------------------~--~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v 387 (576)
T PLN02286 343 DMV---------------------------------F--KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVV 387 (576)
T ss_pred HHH---------------------------------H--HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCee
Confidence 321 1 55666664311 01 2456778886 68899999999999
Q ss_pred Chhhhhhc----------------------------CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Q 003601 363 FGNDAKDT----------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (808)
Q Consensus 363 ~~~d~l~~----------------------------~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (808)
+++|++++ .++.+++||++++..+ .++++|+|+.+.+. +++-.-++.+.+
T Consensus 388 ~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~-~g~t~pYlQYah 465 (576)
T PLN02286 388 RLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR-LTNYTFSFDQMLDL-KGNTAVYLLYAH 465 (576)
T ss_pred EHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC-CCCCccCHHHHHhh-cCCChHHHHHHH
Confidence 99999983 2468999999999655 89999999997653 344444899999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003601 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (808)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (808)
.|++++++|.... .............++.++.|+..+..+.+.+..+.++++++..+.++.+|+..+|+|++..+
T Consensus 466 AR~~SIlrKa~~~-~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~~ 540 (576)
T PLN02286 466 ARICSIIRKSGKD-IDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCK 540 (576)
T ss_pred HHHHHHHHhccCc-cccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999983210 00000000011224567899999999999999999999999999999999999999998663
No 77
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=99.87 E-value=3.4e-22 Score=179.79 Aligned_cols=97 Identities=42% Similarity=0.745 Sum_probs=89.5
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEeeeecCC--
Q 003601 652 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSD-- 729 (808)
Q Consensus 652 ~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~~~~~~-- 729 (808)
+|||+|+++++||++++|++++||+|++.+|||+||+.++|++++++|++|++++||+|++|+|+.|+|||||+++.+
T Consensus 1 ~~vg~I~~~~~~p~~~kL~~~~vd~G~~~~~~ivsg~~~~~~~~~~~g~~v~~~~~l~~~~~~g~~S~GMl~s~~~~g~~ 80 (99)
T cd02153 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPKKLRGVESEGMLLSAEELGLE 80 (99)
T ss_pred CEEEEEEEEEECCCCCCCEEEEEEeCCCcEEEEEeCCcccCChHHhCCCEEEEEEecccccCCCeecccEEeeccccCCC
Confidence 689999999999999999999999997678999999999999999999999999999999999999999999998742
Q ss_pred CCeEEEEcCCCCCCCCcee
Q 003601 730 NTKVELVEPPKSAKIGERV 748 (808)
Q Consensus 730 ~~~~~~l~~~~~~~~G~~v 748 (808)
.+...|+.+|.++++|++|
T Consensus 81 ~~~~~i~~~~~~~~~G~~~ 99 (99)
T cd02153 81 EGSVGILELPEDAPVGDRI 99 (99)
T ss_pred CCceEEEECCCCCCCCCcC
Confidence 2356799999999999875
No 78
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.78 E-value=1.5e-20 Score=201.44 Aligned_cols=262 Identities=20% Similarity=0.331 Sum_probs=125.4
Q ss_pred CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhH--HHHHHHH----------------
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--ATETKAM---------------- 81 (808)
Q Consensus 20 ~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~--~i~~~A~---------------- 81 (808)
++..+.|-+++ +|+|.+||||++. ++.+|+++|-+|.+|++|.+++.+|+.+- ||-....
T Consensus 21 ~~~~~v~~sG~-sPSG~~HIGn~rE-v~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VP 98 (360)
T PF01921_consen 21 GKEPYVFASGI-SPSGLPHIGNFRE-VLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVP 98 (360)
T ss_dssp --SEEEEEEEE---SS---HHHHHH-HHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB
T ss_pred CCccEEEecCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCC
Confidence 34556666665 9999999999998 68899999999999999999999999852 2221111
Q ss_pred -HcCCCHHHHHHHHHHHHHHHHHhcCccccccCCCC---ChH----------HHHHHHHHHHHHHhCCceeeceeeeecc
Q 003601 82 -EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTS---TPQ----------QTEACQAIFKKLLDNNWLIENTMQQPYC 147 (808)
Q Consensus 82 -~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~---~~~----------~~~~v~~~f~~L~~~G~iy~~~~~~~y~ 147 (808)
-.|+ ...|+++|.+.|.+.|+.|||.++....|. +-. +...+.+++.......
T Consensus 99 dP~G~-~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~------------ 165 (360)
T PF01921_consen 99 DPFGC-HESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE------------ 165 (360)
T ss_dssp -TTSS-SSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT------------
T ss_pred CCCCC-CccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC------------
Confidence 1122 357999999999999999999887443221 112 2333334433332211
Q ss_pred CCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCc--------cccCCCccccCCCCcEEeeccceeEeccchHH
Q 003601 148 DTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNA--------TDLKDPKCKVCRNAPQIRDTNHLFLDLPALRN 219 (808)
Q Consensus 148 ~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~--------~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~ 219 (808)
..++|+| +...|++||+.... ..-+..+|..||+..+..-++.- -||.
T Consensus 166 -~~~~y~P------------------f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL~---- 221 (360)
T PF01921_consen 166 -RPETYSP------------------FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKLQ---- 221 (360)
T ss_dssp ---TT--S------------------EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE-----
T ss_pred -CCCCeee------------------eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-cccc----
Confidence 1111211 23467778874321 12234678888877664333221 2221
Q ss_pred HHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEEEecccchhhhhccCCchhHhhh
Q 003601 220 KLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQW 299 (808)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~ 299 (808)
|+- .| +..|
T Consensus 222 --------------Wkv-------DW-----------------------------------------------~mRW--- 230 (360)
T PF01921_consen 222 --------------WKV-------DW-----------------------------------------------PMRW--- 230 (360)
T ss_dssp --------------HHH-------HH-----------------------------------------------HHHH---
T ss_pred --------------CCC-------cC-----------------------------------------------hhhh---
Confidence 321 11 1111
Q ss_pred cCCCCCcceEEEEeeccccchhcHHHH--Hh-hhCCCCcccCcEEEEeeeeecCCC-ccccccCCccChhhhhhcCCCch
Q 003601 300 WKNPENVELYQFMGKDNVPFHTVMFPS--TL-LGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVE 375 (808)
Q Consensus 300 w~~p~d~~~vh~~GkDii~fH~i~~pa--~l-~a~g~~~~~p~~i~~hg~l~~~G~-KMSKS~GN~I~~~d~l~~~~~~D 375 (808)
+.-..| +--.||||.-.=..+=.+ +. ..+|. ++| .-+..+|++++|. |||||+||+|+++|+++ -++++
T Consensus 231 ~~lgVd---fEp~GKDH~~~GGS~d~~~~I~~~i~g~--~pP-~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~-~~~PE 303 (360)
T PF01921_consen 231 AALGVD---FEPFGKDHASPGGSYDTSKRIAREILGY--EPP-VPFPYEFFLDKGGGKMSSSKGNGITPEEWLE-YAPPE 303 (360)
T ss_dssp HHTT-S---EEEEEHHHHCTTSHHHHHHHHHHHCC--------EEEEE--EEES--------------HHHHHT-TS-HH
T ss_pred hhcCce---eccCCCccCCCCCChhhHHHHHHHHhCC--CCC-CCCCeeEEEeCCCcccccCCCCccCHHHHHH-hcCHH
Confidence 111344 456899975422111111 22 23454 344 5667899988776 99999999999999998 69999
Q ss_pred hHHHHHHhcCCCCCCcccCHH-HHH
Q 003601 376 VWRYYLLTNRPEVSDTLFTWA-DLQ 399 (808)
Q Consensus 376 ~lRy~ll~~~~~~~D~~Fs~~-~l~ 399 (808)
.|||++++..| .+..+|+.+ .+.
T Consensus 304 ~lr~l~~~~~P-~~~~~~~~~~~i~ 327 (360)
T PF01921_consen 304 SLRYLMARTKP-NKAKDFSFDLVIP 327 (360)
T ss_dssp HHHHHHHCS-T-TS-EEE--STTHH
T ss_pred HHHHHHcccCC-CcceEeccCcchH
Confidence 99999999665 566666666 443
No 79
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.77 E-value=2.8e-18 Score=161.96 Aligned_cols=128 Identities=35% Similarity=0.595 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 003601 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481 (808)
Q Consensus 402 ~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~ 481 (808)
+|++|++++||+++|+.+++.+ .+++.+|... .....|+++++.++.+.+++.++|++|+|+.|++.++++++.
T Consensus 1 ~n~~l~~~~gnll~r~~~~~~~----~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 74 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASK----YFGGVVPEFG--GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARA 74 (129)
T ss_pred CcHHHHhhHhhHHHHHHHHHHH----HcCCcCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4789999999999999999988 6778776532 123457899999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhccC-ChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHc
Q 003601 482 GNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (808)
Q Consensus 482 ~N~yi~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (808)
+|+|++..+||.+.++ +.+++..+++++.++++.++++|+||||++|+++|++|
T Consensus 75 ~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 75 ANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 9999999999998865 45667889999999999999999999999999999975
No 80
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=8.7e-18 Score=184.42 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhH--------HHHHHHHH-cCC-------
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--------ATETKAME-DNC------- 85 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~--------~i~~~A~~-~g~------- 85 (808)
..+.|-|++ +|+|.+|||+++. ++.+|+++|-+|.+|++|.+++=+|+++- |=....++ .|+
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rE-v~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFRE-VLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHH-HHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 456666665 9999999999998 68899999999999999999999999852 11112221 232
Q ss_pred ---CHHHHHHHHHHHHHHHHHhcCcccccc
Q 003601 86 ---SPKEICDKYHVIHKDVYKWFDISFDNF 112 (808)
Q Consensus 86 ---~p~e~~~~~~~~~~~~~~~lgI~~D~f 112 (808)
.+..+++++.+.|.+-++.|||.+...
T Consensus 97 P~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 97 PFGCCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCceEEE
Confidence 356899999999999999999988754
No 81
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.75 E-value=5.1e-18 Score=163.50 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=73.9
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (808)
|+++.|||||.+||||+++ ++.+|+++||+|++|++|.+++|+||+|.+|...|.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~-~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRT-IVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHH-HHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998 6789999999999999999999999999999999999999999999999999999998
No 82
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=99.72 E-value=1.5e-17 Score=150.59 Aligned_cols=91 Identities=31% Similarity=0.531 Sum_probs=80.0
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEee---------ecccceecccccceEE
Q 003601 652 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLC---------NLKPVAMRGIKSHAMV 722 (808)
Q Consensus 652 ~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~---------nlk~~~~~g~~S~gml 722 (808)
++||+|+++++||++++|++++||+|++++|||+||+.++. +|++|+++. ||+|++|+|+.|+|||
T Consensus 1 ~~vg~I~~~~~hp~~~kL~~~~vd~g~~~~~~Iv~~~~n~~-----~g~~vvv~~~gs~l~~~~~i~~~~~~G~~S~GMl 75 (103)
T cd02796 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVR-----AGDKVVVALPGAVLPGGLKIKKRKLRGVESEGML 75 (103)
T ss_pred CEEEEEEEEEecCCCCceEEEEEEeCCCcEEEEEcCccHhh-----cCCEEEEEecCCCcCCCceEcceeeCCcccchhC
Confidence 68999999999999999999999999767899999999984 499999987 9999999999999999
Q ss_pred eeeec---CCCCeEEEEcCCCCCCCCcee
Q 003601 723 LCAST---SDNTKVELVEPPKSAKIGERV 748 (808)
Q Consensus 723 l~~~~---~~~~~~~~l~~~~~~~~G~~v 748 (808)
||+.+ ++ +...++.+|+++++|+++
T Consensus 76 ~s~~elg~~~-~~~gi~~l~~~~~~G~~~ 103 (103)
T cd02796 76 CSAKELGLGE-DSDGIIELPEDAPVGTDI 103 (103)
T ss_pred cchhHcCCCC-CCCeEEECCCCCCCCCCC
Confidence 99865 11 234588889899999864
No 83
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.67 E-value=3.8e-16 Score=172.40 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=91.5
Q ss_pred CCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH-----------------
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----------------- 82 (808)
Q Consensus 20 ~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~----------------- 82 (808)
..+++.|--.-|.|+|++||||+|++ +.+|+++|.++..||+|.-..-+.|.|..+..-+..
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~-iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNT-IIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHH-HHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhh-hhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 45678888888999999999999996 569999999999999998777777777644322211
Q ss_pred --------------cCC------------------------CHHHHHHH-HHHHHHHHHHhcCccccccCCCCChHHHHH
Q 003601 83 --------------DNC------------------------SPKEICDK-YHVIHKDVYKWFDISFDNFGRTSTPQQTEA 123 (808)
Q Consensus 83 --------------~g~------------------------~p~e~~~~-~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~ 123 (808)
... ...++... +.+.+++++.+|++.+|.+...++..+...
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~~ 176 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSGK 176 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTTH
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhhH
Confidence 000 11223444 667888999999999998876666678888
Q ss_pred HHHHHHHHHhCCceeeceeeeecc
Q 003601 124 CQAIFKKLLDNNWLIENTMQQPYC 147 (808)
Q Consensus 124 v~~~f~~L~~~G~iy~~~~~~~y~ 147 (808)
+.+++++|.++|++|+..+..|..
T Consensus 177 v~~vl~~L~e~g~~~~~dGa~~i~ 200 (354)
T PF00750_consen 177 VDEVLERLKEKGLLYESDGALWID 200 (354)
T ss_dssp HHHHHHHHHCTTTEEEETTEEEEE
T ss_pred HHHHHHHHHhCCcEEecCCcEEEe
Confidence 999999999999999877766653
No 84
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.59 E-value=1e-14 Score=135.30 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Q 003601 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSE 481 (808)
Q Consensus 403 n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i-~~l~~~ 481 (808)
++++++.++|+++|+.+++.+ ++++..|.. .....|+++++.++.+.+++.++|++|+|+.|++.+ +++...
T Consensus 2 ~~~~~~~~~~~l~R~~~~~~~----~~~~~~~~~---~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~ 74 (117)
T cd07959 2 REEEANSAILRLERFYELAEE----LIETEGELE---ELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQND 74 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHhccCCcc---ccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 467899999999999999987 455544431 234578999999999999999999999999999997 999999
Q ss_pred HHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHc
Q 003601 482 GNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (808)
Q Consensus 482 ~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (808)
+|+|++..+|| ....++.++++.++++|+||+||+|+++|++|
T Consensus 75 ~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 75 LDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 99999999988 12346788999999999999999999999875
No 85
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.54 E-value=3.1e-14 Score=162.66 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=78.9
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|=-+|.|||.+|||||+++ +..+.+|| .|...|+.-+||.+.+|.+ ....+.+.+.+++++
T Consensus 102 V~tRFaPsPtG~LHIGharaa-lln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~edL~w 164 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAA-ILNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILEDLKW 164 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHHHHH
Confidence 566677999999999999984 67999998 5778888899998876632 122344788999999
Q ss_pred cCccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||+.+|..+++| .|.+...++.++|.++|++|.
T Consensus 165 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 165 LGVKWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred cCCCCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 999999777777 678889999999999999994
No 86
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.53 E-value=2.7e-13 Score=129.27 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=103.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 003601 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (808)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al 472 (808)
||.+.+... ..++++++|++..+...+.. .+ .+..........++++++.++.+.+++.++|++++|++|+
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al 71 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLED-----DD--EPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAA 71 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccc-----cC--ccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 566666654 66888999998865332111 11 1100001123457889999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHc
Q 003601 473 KTAMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (808)
Q Consensus 473 ~~i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (808)
+.+++++. .+|+|++..+||.+. .+..++.++++++.++++.++++|+||||++|+++|++|
T Consensus 72 ~~i~~~~~~~~~N~Yi~~~~pW~~~-~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 72 TALYEFFWNDFCDWYLELVKPRLYG-EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHcC-CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 99999997 799999999999884 344567788999999999999999999999999999875
No 87
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.50 E-value=4.8e-13 Score=134.13 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=105.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCC-cCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 003601 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGS-IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQG 471 (808)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g-~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a 471 (808)
|+.+.+.+. .+++++++|.++.+..-+.. +.. ..... .......|++++++++.+.+++.++|++|+|+.|
T Consensus 1 i~~~~~~~~--~~~~~Kl~N~~rf~~~~~~~-----~~~~~~~~~-~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a 72 (180)
T cd07960 1 ISDEILKQV--AEAYRKIRNTFRFLLGNLND-----FDPAKDAVP-YEELLELDRYALHRLNELIKEVREAYENYEFHKV 72 (180)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccC-----CCcccccCC-hhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 456666664 67999999999987643322 111 01000 0123467899999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHHHHhhcchhhc--cCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 472 LKTAMSISS--EGNAYLQESQFWKLY--KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 472 l~~i~~l~~--~~N~yi~~~~pw~l~--k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
++.+++|+. .+|.|++..+||.+. ++++.+ ..+..++..+++.+++||+||||++|++||++||.
T Consensus 73 ~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 73 YQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceecCCCCCHHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 999999995 789999999999874 233332 45667788899999999999999999999999985
No 88
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.49 E-value=2e-13 Score=126.35 Aligned_cols=110 Identities=21% Similarity=0.307 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Q 003601 409 NLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488 (808)
Q Consensus 409 ~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~ 488 (808)
...|+++|+.+++.+ ++++.+|..........|+++++.+..+.+++.++|++|+|++|++.++++++.+|+|++.
T Consensus 8 ~~~n~l~R~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~ 83 (117)
T cd07958 8 GAYRFLNRVWRLVTE----LAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKK 83 (117)
T ss_pred HHHHHHHHHHHHHHH----HHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcc
Confidence 346788888877776 4455444310012234688999999999999999999999999999999999999999987
Q ss_pred hcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHc
Q 003601 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (808)
Q Consensus 489 ~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (808)
.+| +++++.++++.++++|+||||++|+++|++|
T Consensus 84 ~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 84 DAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred ccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 655 3567889999999999999999999999875
No 89
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=99.40 E-value=4.3e-13 Score=163.08 Aligned_cols=91 Identities=27% Similarity=0.466 Sum_probs=78.1
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEe---------eecccceecccccceEE
Q 003601 652 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVL---------CNLKPVAMRGIKSHAMV 722 (808)
Q Consensus 652 ~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~---------~nlk~~~~~g~~S~gml 722 (808)
++||+|+++++||++|+|++|+||+|+++++|||||+.+... |++|+|+ .+|++++|||+.|+||+
T Consensus 46 ~~vg~i~~~~~hp~~~~L~~~~vd~g~~~~~~Iv~ga~n~~~-----g~~V~va~~Ga~l~~~~~i~~~~~~Gv~S~GMl 120 (798)
T TIGR00472 46 VVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGAPNVEA-----GKKVAVALPGAKLPNGLKIKKSKLRGVESEGML 120 (798)
T ss_pred EEEEEEEEEEecCCCCcEEEEEEEcCCCceEEEEeCCccccC-----CCEEEEEccCCCccCCceEeeeecCCeeechhc
Confidence 999999999999999999999999997678999999998754 9999997 56999999999999999
Q ss_pred eeeec----CCCCeEEEEcCCCCCCCCceee
Q 003601 723 LCAST----SDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 723 l~~~~----~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
||+.+ +++++ ++.+|.++++|+++.
T Consensus 121 cs~~elg~~~~~~g--i~~l~~~~~~G~~~~ 149 (798)
T TIGR00472 121 CSEDELGLDEKSDG--IIVLDEDAPLGTDIA 149 (798)
T ss_pred ccHhHcCCCCCCCC--EEEcCCCCCCCccHH
Confidence 99865 11222 566677889998873
No 90
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.34 E-value=2.9e-11 Score=121.60 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=102.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 003601 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (808)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al 472 (808)
||++.+... .+.++++|+|+++.++..+... .++..............|+|++++++.+..++.++|++|+|+.|+
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~---~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~ 76 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLD---GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAV 76 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh---CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 677887664 4569999999998886533220 121110000001235679999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhhcc--hhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHcCC
Q 003601 473 KTAMSISSE-GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 473 ~~i~~l~~~-~N~yi~~~~p--w~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (808)
+.++.|+.. ++.|++..++ |... +.........++..+++.++.+|+|||||+||+||++|+-
T Consensus 77 ~~l~~f~~~~~~~Y~e~~K~~~~~~~--~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 77 RALLEFIDELTNWYIRRNRKRFWGEE--GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHHHHhhhhHhhhchHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999875 4889988664 4322 1223345667888999999999999999999999999974
No 91
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.32 E-value=8.6e-12 Score=121.42 Aligned_cols=90 Identities=27% Similarity=0.418 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-H-HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccc
Q 003601 445 TKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS-S-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEP 522 (808)
Q Consensus 445 d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~-~-~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P 522 (808)
|+|++++++.+.+++.++|++|+|+.|+..++.|+ . .+|+|++..+||...+.+..... +++++.++++.++++|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 68999999999999999999999999999999974 3 47999999999988765544444 889999999999999999
Q ss_pred cchHHHHHHHHHc
Q 003601 523 FMPSFSVEVNKQL 535 (808)
Q Consensus 523 ~~P~~a~~i~~~L 535 (808)
|||++|+++|++|
T Consensus 80 ~~P~~aEeiw~~l 92 (153)
T PF08264_consen 80 FMPFIAEEIWQRL 92 (153)
T ss_dssp TSHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHh
Confidence 9999999999887
No 92
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.31 E-value=1.9e-12 Score=157.25 Aligned_cols=91 Identities=34% Similarity=0.560 Sum_probs=75.3
Q ss_pred eEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEe---------eecccceecccccceE
Q 003601 651 DIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVL---------CNLKPVAMRGIKSHAM 721 (808)
Q Consensus 651 ~~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~---------~nlk~~~~~g~~S~gm 721 (808)
.++||+|+++++||++|+|++|+||+|+ +.+|||||+.++.. |.+|++. .+|++++|||+.|+||
T Consensus 44 ~i~vg~i~~~~~hp~~~~L~v~~v~~g~-~~~~iv~ga~n~~~-----g~~v~~a~~G~~l~~~~~i~~~~~~Gv~S~GM 117 (791)
T PRK00629 44 GVVVGKVLECEKHPNADKLRVCQVDVGE-EPLQIVCGAPNVRA-----GDKVPVALPGAVLPGGFKIKKAKLRGVESEGM 117 (791)
T ss_pred CEEEEEEEEEEecCCCCeEEEEEEEcCC-eEEEEEeCCccccC-----CCEEEEEccCCCccCCceEeeeecCCeEEchh
Confidence 4999999999999999999999999997 56999999999854 7777662 4699999999999999
Q ss_pred Eeeeec----CCCCeEEEEcCCCCCCCCceee
Q 003601 722 VLCAST----SDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 722 ll~~~~----~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
+||+++ +++++ |+..|.++++|+.+.
T Consensus 118 lcs~~ELGl~~~~~G--I~~L~~~~~~G~~~~ 147 (791)
T PRK00629 118 LCSASELGLSDDHDG--IIELPEDAPVGTDAR 147 (791)
T ss_pred cccHhHcCCCcCCCC--eEECCCCCCCCccHH
Confidence 999855 12223 666677788998773
No 93
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.27 E-value=1.1e-10 Score=120.30 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=76.8
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
+|=-.|+|||.+||||+++ .+..|+++| ++++.|+..+||.+.+.. + ....+.+.+.+++++|
T Consensus 3 ~~RfaPsPtG~lHiG~~rt-al~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wL 65 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARA-AILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWL 65 (240)
T ss_pred eEeCCCCCCCCccHHHHHH-HHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHc
Confidence 3445689999999999998 577999999 788999999999987763 1 1223334589999999
Q ss_pred CccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 106 DISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 106 gI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
|+.+|..++.+ +|.+..+++.++|.++|.+|.
T Consensus 66 Gl~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 66 GVKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 99999665655 678888999999999999996
No 94
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.19 E-value=2.2e-10 Score=105.52 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 003601 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (808)
Q Consensus 408 ~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~ 487 (808)
.+++|.+.|+..++.+ ++++..|........+.|+++++.++.+.+++.++|++|+|+.|+..+++|+...|+|++
T Consensus 8 ~~~~n~~~r~~~~~~~----~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 8 RAFLNRLYRLLSFFRK----ALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHHH----hcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHH
Confidence 4578888888888765 444443321101123468899999999999999999999999999999999999999999
Q ss_pred hhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccc
Q 003601 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFM 524 (808)
Q Consensus 488 ~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~ 524 (808)
..+||.+.+. ....++.++.++++.++++|+|||
T Consensus 84 ~~~pw~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 84 ELKPALQTEE---LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HhhHHHcCch---hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999998652 344567788899999999999996
No 95
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=99.09 E-value=2e-10 Score=108.82 Aligned_cols=75 Identities=33% Similarity=0.468 Sum_probs=67.0
Q ss_pred eeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccceecccccceEEeeeecC
Q 003601 649 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTS 728 (808)
Q Consensus 649 ~~~~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~~~g~~S~gmll~~~~~ 728 (808)
-+++.||+|.|+.+||++|+||++.||+|. ..++||++.-.+.. |.+| +|+-|+||.+.|+.|+||+|.+.+-
T Consensus 119 aV~~vvGEV~Sv~~hp~aD~L~v~vvn~G~-r~~tVVTN~~~vre-----g~~v-aVAlLPPr~F~gvvSeGMFlg~~d~ 191 (219)
T COG2517 119 AVDIVVGEVMSVGKHPNADKLLVTVVNIGG-RAVTVVTNDLDVRE-----GDRV-AVALLPPRNFFGVVSEGMFLGAKDV 191 (219)
T ss_pred eEEEEeeeeeecccCCCCCceEEEEEecCC-eEEEEEeccccccc-----CCEE-EEEecChhHhccccccceeeccccc
Confidence 589999999999999999999999999997 46899999888766 8887 4567999999999999999999665
Q ss_pred CC
Q 003601 729 DN 730 (808)
Q Consensus 729 ~~ 730 (808)
++
T Consensus 192 ~g 193 (219)
T COG2517 192 DG 193 (219)
T ss_pred cC
Confidence 44
No 96
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.6e-07 Score=100.51 Aligned_cols=346 Identities=15% Similarity=0.195 Sum_probs=213.8
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhH----HHHHHHHH-----
Q 003601 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT----ATETKAME----- 82 (808)
Q Consensus 12 ~~~~~~~~~~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~----~i~~~A~~----- 82 (808)
.++.+|.-+.++.+|--.-|..--.+|+||+|+ +|.+|.++|.+...|++|+-+.-.-|.|+ -|+---++
T Consensus 178 ~GV~~P~l~~KrvlVDFSSPNIAKeMHVGHLRS-TIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l 256 (656)
T KOG4426|consen 178 NGVKLPTLSVKRVLVDFSSPNIAKEMHVGHLRS-TIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYL 256 (656)
T ss_pred cCCCCcccceeeEEEecCCCcHHHHhhhhhhhh-hhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchh
Confidence 345567777888999999999999999999998 56799999999999999988876655544 22211111
Q ss_pred -------------------------------------cCCC------HHHHHHHHHHHHHHHHHhcCccccccCCCCChH
Q 003601 83 -------------------------------------DNCS------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQ 119 (808)
Q Consensus 83 -------------------------------------~g~~------p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~ 119 (808)
+|-. +..+|+--..+|...+++|.|+...- -+..
T Consensus 257 ~vsp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~---GESF 333 (656)
T KOG4426|consen 257 SVSPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER---GESF 333 (656)
T ss_pred ccCCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc---chhh
Confidence 1222 23578888889999999999987422 2335
Q ss_pred HHHHHHHHHHHHHhCCceeeceeee-eccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccC
Q 003601 120 QTEACQAIFKKLLDNNWLIENTMQQ-PYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198 (808)
Q Consensus 120 ~~~~v~~~f~~L~~~G~iy~~~~~~-~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~ 198 (808)
|...+.++.+.|..+|++.+.++.. -|-+ -|
T Consensus 334 Yq~~m~~vveel~~kglvee~~Gr~i~f~~------------------------------------------------g~ 365 (656)
T KOG4426|consen 334 YQDRMAEVVEELKSKGLVEEDDGRRIMFPE------------------------------------------------GC 365 (656)
T ss_pred hhhHHHHHHHHHhcCCceeecCCceEeccC------------------------------------------------CC
Confidence 7778889999999999998765332 1111 12
Q ss_pred CCCcEEee-ccceeEeccchHHHHHHHHHcCCCCCCCChhHHHHHHHHHHccCccceeccccCCCcccCCccCCCceEEE
Q 003601 199 RNAPQIRD-TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYV 277 (808)
Q Consensus 199 g~~~~~~~-~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyV 277 (808)
+-|+.+.+ ...+-++.+.+.. +..-+.+..-|| .|||
T Consensus 366 ~IPLtvVKSDGGftYdtsDlaA----------------------l~yRl~EEkadw--------------------iIYV 403 (656)
T KOG4426|consen 366 DIPLTVVKSDGGFTYDTSDLAA----------------------LKYRLNEEKADW--------------------IIYV 403 (656)
T ss_pred CcceEEEecCCCcccccchHHH----------------------HHHHHHHhhcCe--------------------EEEE
Confidence 34444333 3333333333211 111222334444 2333
Q ss_pred EecccchhhhhccCCchhHhhhcCCCCCcceEEEEeecc-ccchhcHHHHHhhhCCCCcccCcEEEEeee--ee-cCCCc
Q 003601 278 WFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDN-VPFHTVMFPSTLLGTGENWTLMKTISVTEY--LN-YESGK 353 (808)
Q Consensus 278 WfDA~~~Yis~~~~~~~~~~~~w~~p~d~~~vh~~GkDi-i~fH~i~~pa~l~a~g~~~~~p~~i~~hg~--l~-~~G~K 353 (808)
.-..+ ..|..+|- |.-++.=++ +...++.+-|| ++ .+|+|
T Consensus 404 ----------------------------------vD~GQs~Hf~t~fk-Aar~~gwld-~~~~RV~HvgFGlVLGeD~Kk 447 (656)
T KOG4426|consen 404 ----------------------------------VDSGQSQHFNTIFK-AARKAGWLD-PTYPRVEHVGFGLVLGEDKKK 447 (656)
T ss_pred ----------------------------------eeCchhHHHHHHHH-HHHHcCccC-CCccceeeeeeeeEEccCccc
Confidence 11111 11222221 111111111 22335555555 43 57888
Q ss_pred cccccCCccChhhhhhcC----------------CC-------ch-----hHHHHHHhcCCCCCCcccCHHHHHHHHHHH
Q 003601 354 FSKSKGIGVFGNDAKDTN----------------IP-------VE-----VWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (808)
Q Consensus 354 MSKS~GN~I~~~d~l~~~----------------~~-------~D-----~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~ 405 (808)
|-+..|.+|-..|+++++ .+ .+ .+.|.=+++. --+|--||.+.+.+- ..+
T Consensus 448 FkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hn-R~~dY~FSFDkML~D-rGn 525 (656)
T KOG4426|consen 448 FKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHN-RITDYIFSFDKMLED-RGN 525 (656)
T ss_pred ccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccc-cccceeeeHHHHhhc-cCc
Confidence 888888888777776532 11 12 3555555533 357888999887642 244
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCCCCcC---CCC-CCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 003601 406 LLNNLGNFINRVLSFIAKPPGQGYGSIV---PDA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481 (808)
Q Consensus 406 l~~~l~Nl~~R~~~~~~k~~~~~~~g~~---p~~-~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~ 481 (808)
-+-+|-+.+.|+++++++...+ +...+ ... ....+++-+..+-..+-.+.+-+..+++++-++..+.++++++..
T Consensus 526 TAvYLLYa~tRIcSI~rksg~d-~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~ 604 (656)
T KOG4426|consen 526 TAVYLLYAYTRICSIARKSGKD-NVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATL 604 (656)
T ss_pred ceehhHHHHHHHHHHHHHcCCc-hhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778899999998873111 00000 111 123345566777777888889999999999999999999999999
Q ss_pred HHHHHHhhc
Q 003601 482 GNAYLQESQ 490 (808)
Q Consensus 482 ~N~yi~~~~ 490 (808)
+..|++++.
T Consensus 605 Ft~FY~~Cy 613 (656)
T KOG4426|consen 605 FTEFYDSCY 613 (656)
T ss_pred HHHHhhccE
Confidence 999988764
No 97
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.02 E-value=1e-08 Score=117.67 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=77.0
Q ss_pred EEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003601 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (808)
Q Consensus 24 ~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (808)
-++|==+|.|||.+|||||++. +..+.+|| .|...|+.-+||.+.+ .-...+.+.+.++++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaa-lln~~~Ar-----~~~G~~iLRidDTDp~-------------R~~~e~~~~I~edL~ 153 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAA-ILNQYFAK-----KYKGKLIIRFDDTDPR-------------RVKPEAYDMILEDLD 153 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----hcCCEEEEEeCcCCcc-------------cccHHHHHHHHHHHH
Confidence 4677788999999999999975 66888886 3556777778887653 112236788999999
Q ss_pred hcCccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
+||+.+|..++++ .|.+...++..+|.++|.+|.
T Consensus 154 wLGi~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 154 WLGVKGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HcCCCCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 9999999877777 788899999999999999994
No 98
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.96 E-value=3.8e-08 Score=111.79 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=71.4
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|==+|.|||.||||||+++ +....+||- ..| .|+.=+||.+. ..-...+.+.+.+++++
T Consensus 12 v~tRFAPsPtG~LHiGharaA-lln~l~Ar~--~gG---~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAA-LLNDYYARR--YKG---RLILRFDDTNP-------------SKEKAEFEESIIEDLGK 72 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEECCCCC-------------CccchHHHHHHHHHHHH
Confidence 567777999999999999985 668888874 234 34444566543 22334567889999999
Q ss_pred cCccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||+.+|..++++ .|.+..++...+|.++|.+|.
T Consensus 73 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 73 IEIKPDSVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred hCCCCCCCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 999999766666 567888999999999999994
No 99
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.95 E-value=3.9e-08 Score=112.34 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCcc
Q 003601 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (808)
Q Consensus 29 ~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~ 108 (808)
=.|.|||.+||||++++ |....+||- ..| .|+.=+||.+. ......+.+.+.+++++|||.
T Consensus 6 fAPsPtG~lHiG~~rta-l~n~l~Ar~--~~G---~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~ 66 (470)
T TIGR00464 6 FAPSPTGYLHIGGARTA-LFNYLFAKH--TGG---EFILRIEDTDL-------------ERNIEEAEEAILEGLKWLGIS 66 (470)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHHH--cCC---EEEEEeCcCCC-------------ccCChHHHHHHHHHHHHCCCC
Confidence 35899999999999985 667777772 223 34444566543 122335667889999999999
Q ss_pred cc-ccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 109 FD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 109 ~D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
+| -.++.+ ++.+.-+++..+|.++|.+|.
T Consensus 67 ~de~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 67 WDEGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 99 444444 345666788899999999994
No 100
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.94 E-value=1.3e-08 Score=114.32 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=68.8
Q ss_pred CCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCcc
Q 003601 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (808)
Q Consensus 29 ~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~ 108 (808)
=.|.|||.+||||||++ |....+|| .+.-.|+.=+||.+. ....+.+.+.++++|++|||.
T Consensus 7 FAPSPTG~lHiG~artA-L~n~l~Ar-----~~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~ 67 (445)
T PRK12558 7 FAPSPTGYLHVGNARTA-LLNWLYAR-----KHGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGIN 67 (445)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHH-----HhCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCC
Confidence 35799999999999984 55666665 345566666777653 223367778999999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 109 FDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 109 ~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
+|.+++.+ .....++++.++|.++|++|.
T Consensus 68 ~De~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 68 WDRTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred CCccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 99876665 334688999999999999984
No 101
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.88 E-value=7.6e-08 Score=109.71 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=66.2
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|==+|.|||.+|||||+++ +....+||. ..| .|+.=+||.+. ..-...+.+.+.+++++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~--~~G---~~iLRieDTd~-------------~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSI-CLNFGLAQD--YGG---KCNLRFDDTNP-------------EKEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEECCCCC-------------CcCChHHHHHHHHHHHH
Confidence 566777999999999999985 558888874 223 34444566543 22334567888999999
Q ss_pred cCcccc-ccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||+.+| ..+.++ .|.+...+.-.+|.++|.+|.
T Consensus 91 LGi~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 91 LGFDWSGELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred cCCCCCCCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 999996 334444 344555566679999999994
No 102
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.85 E-value=9.1e-09 Score=117.52 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=66.4
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
+|==.|.|||.+||||+|++ +..-.+||- ..| .|+.=+||.+. .-....+.+.+.+++++|
T Consensus 6 ~~RfAPSPtG~lHiG~~rta-l~n~l~Ar~--~~G---~fiLRieDtD~-------------~R~~~~~~~~i~~~L~wl 66 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTA-LFNWLFARH--HGG---KFILRIEDTDQ-------------ERSTEEAEEAILEGLKWL 66 (476)
T ss_pred eEEeCCCCCCcccHHHHHHH-HHHHHHHHH--cCC---EEEEEeCcCCC-------------CCCChHHHHHHHHHHHHC
Confidence 34445899999999999985 657777774 223 44444565543 223445667889999999
Q ss_pred Ccccccc--------CCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 106 DISFDNF--------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 106 gI~~D~f--------~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||.+|-- ++.+ ++.+.-++..++|.++|.+|.
T Consensus 67 Gl~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 67 GLDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 9999933 3444 455778889999999999994
No 103
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.84 E-value=1.1e-07 Score=108.11 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=60.6
Q ss_pred EeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCC-CC
Q 003601 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE-VS 389 (808)
Q Consensus 312 ~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~~~-~~ 389 (808)
.|.|++. |+-....++.++|. ..| .+.|+.+++ .+|.||||+.|.. .+.++.+.+|-+++++=||+..+.- +.
T Consensus 202 RG~d~~~-~t~~q~~l~~aLG~--~~p-~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG~s~~~ 276 (513)
T PRK14895 202 RGDDHLT-NAARQLAIYQAFGY--AVP-SMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLGWSHGD 276 (513)
T ss_pred ECchHhh-hHHHHHHHHHHcCC--CCC-eEEEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 7888763 22233356677774 345 677888887 8999999999974 6788888899999999999854421 22
Q ss_pred CcccCHHHHHHH
Q 003601 390 DTLFTWADLQAK 401 (808)
Q Consensus 390 D~~Fs~~~l~~~ 401 (808)
+--|+.+.+.+.
T Consensus 277 ~e~~~~~el~~~ 288 (513)
T PRK14895 277 DEIISMTQAIDW 288 (513)
T ss_pred cCCCCHHHHHhh
Confidence 335787776654
No 104
>PLN02907 glutamate-tRNA ligase
Probab=98.83 E-value=1.9e-07 Score=111.35 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=72.1
Q ss_pred EEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003601 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (808)
Q Consensus 24 ~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (808)
-++|==+|.|||.+|||||+++ +....+||- ..| .|+.=+||.+. ..-...+.+.+.++++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~--~~G---~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~ 273 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAA-LLNQYFARR--YKG---KLIVRFDDTNP-------------SKESDEFVENILKDIE 273 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEecCCCC-------------CcCChHHHHHHHHHHH
Confidence 3567778999999999999985 668888873 334 33444566543 2223456788999999
Q ss_pred hcCccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
+||+.+|..++++ .|.+...+...+|.++|.+|.
T Consensus 274 wLG~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 274 TLGIKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HcCCCCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 9999999776666 667888999999999999995
No 105
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.80 E-value=7.2e-08 Score=109.68 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=64.7
Q ss_pred EeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q 003601 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (808)
Q Consensus 27 t~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lg 106 (808)
|==+|.|||.+|||||+++ +....+||- ..| .|+.=+||.+. ..-...+.+.+.+++++||
T Consensus 3 tRFaPsPtG~LHiG~ar~a-l~n~~~A~~--~~G---~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG 63 (522)
T TIGR00440 3 TRFPPEPNGYLHIGHAKSI-CLNFGYAKY--YNG---TCNLRFDDTNP-------------VKEDPEYVESIKRDVEWLG 63 (522)
T ss_pred EecCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEEcCCCc-------------ccCChHHHHHHHHHHHHcC
Confidence 3346899999999999985 668888873 233 34444566543 2223456788899999999
Q ss_pred cccc-ccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 107 ISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 107 I~~D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
+.+| ..+.++ .|.....+...+|.++|.+|.
T Consensus 64 ~~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 64 FKWEGKIRYSS--DYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCCCCCceEcc--ccHHHHHHHHHHHHHcCCEEe
Confidence 9996 333444 455656677799999999994
No 106
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.80 E-value=1.1e-07 Score=112.92 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=69.4
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|==+|.|||.+|||||++. +....+||- ..| .|+.=+||.+.. .-...+.+.+.+++++
T Consensus 32 v~tRFaPsPtG~lHiGhar~a-lln~~~A~~--~~G---~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSI-LLNFGIARD--YGG---RCHLRMDDTNPE-------------TEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEeCCCCCC-------------cCChHHHHHHHHHHHH
Confidence 567778999999999999985 557777763 223 444445665432 2234567889999999
Q ss_pred cCccccc-cCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||+.+|. .+.++ .|.+...+...+|.++|.+|.
T Consensus 93 LG~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 93 LGFDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred cCCCCCCCceEee--cCHHHHHHHHHHHHHcCCccc
Confidence 9999984 34455 567788888999999999994
No 107
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.79 E-value=9.2e-08 Score=108.86 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=68.4
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
.+|==+|.|||.+|||||+++ +....+||.. .| .|+.=+||.+ |..-...+.+.+.+++++
T Consensus 52 v~tRFaPsPtG~LHiGharaa-lln~~~Ar~~--gG---~~iLRiEDTD-------------p~r~~~e~~~~I~~dL~w 112 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSM-NLNFGSARAH--GG---KCYLRYDDTN-------------PETEEQVYIDAIMEMVKW 112 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHH-HHHHHHHHHh--CC---EEEEEECCCC-------------ccccChHHHHHHHHHHHH
Confidence 356667899999999999985 6688888742 23 3344456544 233345677889999999
Q ss_pred cCccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||+.+|..+.++ .|.+...+...+|.++|.+|.
T Consensus 113 LGi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 113 MGWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred cCCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEE
Confidence 999999665444 555666677889999999994
No 108
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.78 E-value=5e-07 Score=103.89 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=70.2
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|==+|.|||.||||||++. +....+||-. .| .|+.=+||.+- ..-...+.+.+.+++++
T Consensus 53 v~tRFAPsPtGyLHIGharaA-llN~l~Ar~~--gG---~~iLRiEDTDp-------------~R~~~e~~d~IleDL~W 113 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAA-LINSMLADKY--KG---KLVFRFDDTNP-------------SKEKEHFEQAILDDLAT 113 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHH-HHHHHHHHHh--CC---EEEEEEcCCCC-------------cccCHHHHHHHHHHHHH
Confidence 667778999999999999985 6688888742 34 33444566432 22344667889999999
Q ss_pred cCccccc-cCCCCChHHHHHHHHHHHHHHhCCcee
Q 003601 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLI 138 (808)
Q Consensus 105 lgI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy 138 (808)
||+.+|. .+.++ .|.+...++..+|.++|++|
T Consensus 114 LGl~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 114 LGVSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCCCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 9999985 44555 56788899999999999999
No 109
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.78 E-value=1.1e-07 Score=97.83 Aligned_cols=86 Identities=20% Similarity=0.277 Sum_probs=60.2
Q ss_pred CCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCcc
Q 003601 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (808)
Q Consensus 29 ~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~ 108 (808)
=.|.|||.+||||++++ +....+||-. .| .|+.=+||.+. ..-...+.+.+.+++++||+.
T Consensus 6 FAPsPtG~lHlG~~r~a-l~n~l~Ar~~--~G---~~iLRieDtD~-------------~R~~~~~~~~I~~dL~wlGl~ 66 (230)
T cd00418 6 FAPSPTGYLHIGHARTA-LFNFAFARKY--GG---KFILRIEDTDP-------------ERSRPEYVESILEDLKWLGLD 66 (230)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHHHc--CC---eEEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCC
Confidence 45899999999999985 6677777742 23 34444566543 112235667889999999999
Q ss_pred ccc-cCCCCChHHHHHHHHHHHHHHhCC
Q 003601 109 FDN-FGRTSTPQQTEACQAIFKKLLDNN 135 (808)
Q Consensus 109 ~D~-f~rT~~~~~~~~v~~~f~~L~~~G 135 (808)
+|. -++.+ .+.+.-++..++|.++|
T Consensus 67 wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 67 WDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 995 33333 45667778888888888
No 110
>PLN02859 glutamine-tRNA ligase
Probab=98.78 E-value=6.5e-08 Score=113.67 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=65.5
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|==+|-|||.+|||||++. +....+||.. .| .|+.=+||.+. ..-...|.+.+.+++++
T Consensus 265 V~tRFaPsPtG~LHiGharaa-llN~~~Ar~~--~G---~~~LRieDTdp-------------~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAM-FVDFGLAKER--GG---CCYLRFDDTNP-------------EAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHHh--CC---EEEEEecCCCC-------------CccchHHHHHHHHHHHH
Confidence 455567899999999999985 5578888753 33 34444566442 22345677889999999
Q ss_pred cCccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||+.+|..++++ .|.+...+.-.+|.++|.+|.
T Consensus 326 LG~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 326 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cCCCCCCccccc--HhHHHHHHHHHHHHHcCCeEe
Confidence 999998655555 333333345677999999994
No 111
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.77 E-value=1.7e-08 Score=112.68 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccc
Q 003601 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (808)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (808)
.|.|||.+||||+|++ |....+||- .|= .|+.=+||.+. ......+.+.+.+++++|||.+
T Consensus 5 APSPTG~LHiG~artA-L~n~l~Ar~---~gG--~fiLRiEDTD~-------------~R~~~e~~~~I~~~L~WlGl~w 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAA-IFNYIVAKQ---QNE--DFLIRIEDTDK-------------ERNIEGKDKEILEILNLFGISW 65 (433)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH---cCC--EEEEEeCcCCC-------------CcCChHHHHHHHHHHHHcCCCC
Confidence 3789999999999985 657777763 332 33334555543 1123355678899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 110 DNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 110 D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
|--++.+ ++...-++..++|.++|.+|.
T Consensus 66 De~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 66 DKLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 9655555 455777889999999999993
No 112
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.75 E-value=3.4e-07 Score=94.16 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=68.0
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
+|==.|.|||.+||||++++ +....++|-. .| .|+.=+||.+.. .....+.+.+.+++++|
T Consensus 3 ~~RFAPsPtG~lHlG~~~~a-l~~~l~Ar~~--~G---~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wl 63 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAI-LLNFGYAKKY--GG---RCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWL 63 (238)
T ss_pred eEecCCCCCCcccHHHHHHH-HHHHHHHHHh--CC---EEEEEecCCCCc-------------ccchHHHHHHHHHHHHc
Confidence 34446899999999999985 6677777642 34 344445665432 23345667889999999
Q ss_pred CccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 106 DISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 106 gI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
|+.+|..++.+ ++.+.-++...+|.++|.+|.
T Consensus 64 Gl~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 64 GIKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 99999544444 566788899999999999996
No 113
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.
Probab=98.71 E-value=1.6e-08 Score=109.41 Aligned_cols=66 Identities=24% Similarity=0.257 Sum_probs=56.7
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEe-----------e--------------
Q 003601 652 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVL-----------C-------------- 706 (808)
Q Consensus 652 ~rvg~i~~~~~hp~a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~-----------~-------------- 706 (808)
.+||+|+++++||+||+|.+++||. .|||+|..++.+ |.+|+++ .
T Consensus 3 ~vv~kV~~i~php~Ad~L~v~~Vd~-----~~vV~ga~n~~~-----Gd~Vv~a~~gs~Lp~~~~~~~~~~~~~~~~~g~ 72 (341)
T TIGR02306 3 AVMREIADLQPHPNADALELATVGG-----WEVVVKKGEYRV-----GSDCVYFPEDSVLPTDAGLFRFLETRAKILDGK 72 (341)
T ss_pred eEEEEEEEeeecCCCCceEEEEEeC-----EEEEcCCCcCCC-----CCEEEEECCCCCCCCCCCcchhhcccccccccc
Confidence 3799999999999999999999997 899999999876 5555442 1
Q ss_pred ---ecccceecccccceEEeeeec
Q 003601 707 ---NLKPVAMRGIKSHAMVLCAST 727 (808)
Q Consensus 707 ---nlk~~~~~g~~S~gmll~~~~ 727 (808)
.|+.++|||+.|+||+|+...
T Consensus 73 ~~~~Ik~~klRG~~SqGMlcs~~~ 96 (341)
T TIGR02306 73 MRARVKTVRLRGEISQGIALPTGA 96 (341)
T ss_pred ccceEeEEEeccEEEccEEechhh
Confidence 578889999999999999865
No 114
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.69 E-value=3.3e-07 Score=95.03 Aligned_cols=70 Identities=19% Similarity=0.100 Sum_probs=47.9
Q ss_pred EEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeee-ecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcC
Q 003601 311 FMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR 385 (808)
Q Consensus 311 ~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~ 385 (808)
+-|+|++. |.....+++.++|.+ .| .+.++..+ +.+|.|||||.|+ .++..+.+.++.+++++.|++..+
T Consensus 123 iRG~D~~~-~t~~q~~l~~aLg~~--~p-~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 123 IRGEEHLS-STPKQILLYEALGWE--PP-KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred EEChhhhh-ChHHHHHHHHHcCCC--CC-ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 45666542 122223455666753 44 34455554 5789999999999 577788777899999999998644
No 115
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=4.7e-07 Score=102.41 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=69.6
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|==.|.|||.|||||||++ |....+||.. .|. |+.=+||.+. .--...+.+.+.+++++
T Consensus 10 v~tRFAPsPtG~LHiG~artA-l~N~~~Ar~~--~G~---fiLRiEDTD~-------------~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTA-LLNYLYARKY--GGK---FILRIEDTDP-------------ERETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCccchHHHHHH-HHHHHHHHHh--CCE---EEEEecCCCC-------------CCCCHHHHHHHHHHHHh
Confidence 566677899999999999985 6688888752 343 3333455433 12223556788999999
Q ss_pred cCccccc-cCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||+.+|- .++.+ ++...-.+...+|.++|.+|.
T Consensus 71 LGl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 71 LGLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred cCCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 9999997 45655 677888899999999999993
No 116
>PLN02627 glutamyl-tRNA synthetase
Probab=98.59 E-value=9.1e-07 Score=100.81 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=65.7
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
+|==.|.|||.+||||+|++ |....+||- ..| .|+.=+||.+. .-....+.+.+.+++++|
T Consensus 47 r~RFAPSPTG~LHiG~aRtA-L~n~l~Ar~--~gG---~fiLRIEDTD~-------------~R~~~e~~~~I~~~L~WL 107 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTA-LFNYLFARS--KGG---KFVLRIEDTDL-------------ARSTKESEEAVLRDLKWL 107 (535)
T ss_pred EEEeCCCCCCCccHHHHHHH-HHHHHHHHH--hCC---EEEEEeCcCCC-------------CCCChHHHHHHHHHHHHc
Confidence 44445799999999999985 668888872 234 34444555443 123345667889999999
Q ss_pred Ccccccc---------CCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 106 DISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 106 gI~~D~f---------~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||.+|.- ++.+ ++.+.-++..++|.++|.+|.
T Consensus 108 Gl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 108 GLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred CCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 9999942 2333 456777888999999999993
No 117
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.3e-05 Score=88.41 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=105.2
Q ss_pred HHhhhCCCCcccCcEEEEeeeeecCCCccccccCCccChhhhhhc---------------------------CCCchhHH
Q 003601 326 STLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDT---------------------------NIPVEVWR 378 (808)
Q Consensus 326 a~l~a~g~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~---------------------------~~~~D~lR 378 (808)
-++..+|..|.-+-..+..|. +.=||+.+|+++...|++++ ..|.-++.
T Consensus 344 ~ilk~mg~~~a~~~qHV~~G~----v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAvi 419 (567)
T KOG1195|consen 344 EILKKMGFDWAKKLQHVNFGR----VQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVI 419 (567)
T ss_pred HHHHHhCchhhhhcceecccc----cccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHH
Confidence 356677776533322222333 35699999999988887752 14455566
Q ss_pred HHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCC-----CcCChHHHHHHHHHHH
Q 003601 379 YYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDAN-----GAESHQLTKTLAEKVG 453 (808)
Q Consensus 379 y~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~-----~~~~~~~d~~l~~~l~ 453 (808)
.=.+... -.++-.|+|+.+-. .|.+-.-+|.+..+|..++..+ +....++.. ....++.-..++..|.
T Consensus 420 v~d~k~r-r~s~yeF~w~~~~~-~~gdtg~yLQY~HsRL~Slerk-----~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~ 492 (567)
T KOG1195|consen 420 VQDFKGR-RISNYEFSWNRVLS-FEGDTGPYLQYTHSRLRSLERK-----FSDVTLDDLDEIDFSLLTEPDALLLVRLLL 492 (567)
T ss_pred HHHHHHH-hcccceEEhhhhhe-ecCCchHHHHHHHHHHHHHHHh-----ccccCchhhhccchhhcCChhHHHHHHHHh
Confidence 5555422 35788999998865 5677777899999999998887 333322210 1111122346778888
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 003601 454 KYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (808)
Q Consensus 454 ~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~ 489 (808)
.+.+.+..+++.++....+.+++.++..+++++...
T Consensus 493 ~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~l 528 (567)
T KOG1195|consen 493 QFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKIL 528 (567)
T ss_pred hhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhhe
Confidence 999999999999999999999999999988887654
No 118
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.51 E-value=9.4e-07 Score=96.12 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=58.4
Q ss_pred CCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccc
Q 003601 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (808)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (808)
.|.|||.+||||++++ |....+|| +..| .|+.=+||.+.. .. ...+.+.+.++|++|||.+
T Consensus 7 APsPtG~lHiG~~r~a-l~n~~~Ar--~~~G---~~iLRieDtD~~---------R~----~~~~~~~i~~~L~wlGl~~ 67 (314)
T PF00749_consen 7 APSPTGYLHIGHARTA-LLNYLFAR--KYGG---KFILRIEDTDPE---------RC----RPEFYDAILEDLRWLGLEW 67 (314)
T ss_dssp ---SSSS-BHHHHHHH-HHHHHHHH--HTTS---EEEEEEETSSTT---------TC----HHHHHHHHHHHHHHHT---
T ss_pred CCCCCCCcccchhHHH-HHHHHHHh--ccCc---eEEEeccccccc---------cc----hhhHHHHHHhheeEEEEec
Confidence 4799999999999985 66788777 2334 333445665442 12 2345577889999999999
Q ss_pred c-ccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 110 D-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 110 D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
| ..++.+ .+.+.-++..++|.++|.+|.
T Consensus 68 D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 68 DYGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp STCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 8 444444 667788899999999999994
No 119
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=97.94 E-value=0.00021 Score=69.91 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=87.4
Q ss_pred CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCC-C-CCCcCChHHHHHH
Q 003601 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP-D-ANGAESHQLTKTL 448 (808)
Q Consensus 371 ~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p-~-~~~~~~~~~d~~l 448 (808)
.+|.|++||++++..+ .++.+|+++.+... +++-.-.+.+.+.|+.+++.+... ..... . ....-.++.++.|
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~~-~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLSF-EGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHhh-cCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHH
Confidence 3678999999999655 79999999996643 344566899999999999988321 01100 0 0011123457788
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 003601 449 AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (808)
Q Consensus 449 ~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~ 489 (808)
+..+..+.+.+..++.+.+++.++..+.+++...|.|++..
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v 117 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC 117 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999875
No 120
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.67 E-value=9e-05 Score=78.53 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccc
Q 003601 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (808)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (808)
.|.|||.+||||++++ |....+||- ..|. |+.=+||.+. ......+.+.+.+++++|||.+
T Consensus 6 APSPtG~lHiG~~rtA-L~n~l~Ar~--~gG~---~iLRiEDtD~-------------~R~~~~~~~~I~~dL~wLGl~w 66 (272)
T TIGR03838 6 APSPSGPLHFGSLVAA-LGSYLDARA--HGGR---WLVRIEDLDP-------------PREVPGAADDILRTLEAYGLHW 66 (272)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH--hCCE---EEEEeCcCCC-------------CCCChHHHHHHHHHHHHcCCCC
Confidence 5899999999999985 668888882 3343 3333455443 1112345678899999999999
Q ss_pred cc-cCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 110 DN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 110 D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
|- .++.+ ++.+.-++..++|.++|.+|.
T Consensus 67 De~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 67 DGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 94 23444 566788889999999999994
No 121
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.023 Score=62.34 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=51.3
Q ss_pred CcccCcEEEEeeeeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcC--CCCCCcccCHHHHHHHHHHHH
Q 003601 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR--PEVSDTLFTWADLQAKSNNEL 406 (808)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~--~~~~D~~Fs~~~l~~~~n~~l 406 (808)
+|++|+-...-=.++.+|.|.||..|.+ .+..+.+.+|=|+++==|++..+ ....+--|+.+++++..|-+.
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD~-~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~ 335 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGDA-SVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFSIER 335 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCcc-hHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHhchhh
Confidence 4778874443344568999999999974 67777777888999988887654 334455678888887655443
No 122
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.50 E-value=0.00014 Score=77.92 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=66.3
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
++|==.|.|||.+||||++++ |....+||- .|- .|+.=+||.+. ......+.+.+.+++++
T Consensus 6 v~~RFAPSPTG~LHlG~~rtA-L~n~l~Ar~---~~G--~~iLRiEDtD~-------------~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAA-LGSWLDARA---HGG--RWLLRIEDIDP-------------PREVPGAADAILADLEW 66 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHH-HHHHHHHHH---cCC--EEEEEECcCCC-------------CccchHHHHHHHHHHHH
Confidence 345556899999999999985 657777663 333 33334555433 11233556788999999
Q ss_pred cCccccc-cCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
|||.+|- .++.+ ++...-++..++|.++|.+|.
T Consensus 67 lGl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 67 LGLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 9999993 33444 466788899999999999994
No 123
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.48 E-value=0.0011 Score=72.50 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=48.1
Q ss_pred CCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCcccc-
Q 003601 32 YVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD- 110 (808)
Q Consensus 32 y~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D- 110 (808)
-|+|.+||||..+. + -.+.+.+...|.+++|.. .|-|-. . . ..+|.++ .++......++-++|+.++
T Consensus 11 qPTG~~HLGnylga-~--k~~~~lq~~~~~~~~~~I-ADlHal--t-~----~~~~~~l-~~~~~~~~~~~lA~GlDP~k 78 (332)
T PRK12556 11 KPTGYPHLGNYIGA-I--KPALQMAKNYEGKALYFI-ADYHAL--N-A----VHDPEQF-RSYTREVAATWLSLGLDPED 78 (332)
T ss_pred CCCCcchHHHHHHH-H--HHHHHHHHhcCCeEEEEE-echhhc--c-C----CCCHHHH-HHHHHHHHHHHhheeecccc
Confidence 56699999997763 3 345556666677676554 455543 1 0 1266654 3444556778889999987
Q ss_pred --ccCCCCChHHH
Q 003601 111 --NFGRTSTPQQT 121 (808)
Q Consensus 111 --~f~rT~~~~~~ 121 (808)
.|..+.-++|.
T Consensus 79 ~~if~qS~v~~~~ 91 (332)
T PRK12556 79 VIFYRQSDVPEIF 91 (332)
T ss_pred eEEEECCCchHHH
Confidence 35555555554
No 124
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0021 Score=71.68 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=71.4
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
.||-=||-|+|.||||||..+ | +..|...++. =.+++-+||. .|..=-+++...+.+++..
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAA-L----LNqYfa~~~~-G~LIvRFDDT-------------NPaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAA-L----LNQYFAQAYQ-GKLIVRFDDT-------------NPAKENEEFEDVILEDLSL 261 (712)
T ss_pred eEEecCCCCCceeehhhHHHH-H----HHHHHHHhcC-ceEEEEecCC-------------CcchhhHHHHHHHHHHHHH
Confidence 466677899999999999854 3 5555554433 2344556664 2333345677889999999
Q ss_pred cCccccccCCCCChHHHHHHHHHHHHHHhCCceeece
Q 003601 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141 (808)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~ 141 (808)
|||.+|.+..|+ .|-+.+...-.+|+..|.+|...
T Consensus 262 LgIkpd~~TyTS--DyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 262 LGIKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred hCcCcceeeech--hhHHHHHHHHHHHHhcCcccccC
Confidence 999999997777 78888999999999999999654
No 125
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.011 Score=65.97 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCCCC-cCcchHhhhhhhHHHHHHHHHHHCCCceeEecC--cchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG--TDEYGTATETKAMEDNCSPKEICDKYHVI 97 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G--~D~hG~~i~~~A~~~g~~p~e~~~~~~~~ 97 (808)
+-++|+-. =|+| .+||||+.. + -.++| +...|++|.++.| |--.|+|.-....+.-.+ .+.+..+.+.
T Consensus 32 ~~~~Y~Gf---DPTa~slHlGhlv~--l--~kL~~-fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~-~e~v~~n~~~ 102 (401)
T COG0162 32 PLRVYIGF---DPTAPSLHLGHLVP--L--MKLRR-FQDAGHKPIVLIGDATAMIGDPSGKSEERKLLT-RETVLENAET 102 (401)
T ss_pred CceEEEee---CCCCCccchhhHHH--H--HHHHH-HHHCCCeEEEEecccceecCCCCCCHHHHhhcc-HHHHHHHHHH
Confidence 44556432 5668 899999773 2 34555 4567999988876 333577753333333333 3344444444
Q ss_pred HHHHH
Q 003601 98 HKDVY 102 (808)
Q Consensus 98 ~~~~~ 102 (808)
+++++
T Consensus 103 i~~ql 107 (401)
T COG0162 103 IKKQL 107 (401)
T ss_pred HHHHh
Confidence 44443
No 126
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=95.35 E-value=0.11 Score=47.87 Aligned_cols=79 Identities=10% Similarity=0.127 Sum_probs=56.8
Q ss_pred HHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003601 411 GNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (808)
Q Consensus 411 ~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (808)
.+.+.|+.+++++..........+.. ....++.++.|+..+..+...+..+++.++++..+.++.+++..+|+|++...
T Consensus 2 ~Ya~aRi~sIl~k~~~~~~~~~~~~~-~~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 2 QYAYARISSILRKAEESGINDEYDDD-FLLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHCTCTTCCCCHCCH-HHS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHcCCCcCCccccchh-hhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46788999999873211111111110 01124467889999999999999999999999999999999999999999775
No 127
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.20 E-value=0.25 Score=54.98 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=50.3
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
+++++|.++. -|+|.+||||.. + ...+.++++ .|+++++..+ |.|.. . .+ +.+++++- ++...+..
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~-~---~~~~~~lQ~-~g~~~~i~Ia-D~ha~--~---~~-~~~~e~~~-~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM-V---FDELKWHQE-FGANVYIPIA-DDEAY--A---AR-GLSWEETR-EWAYEYIL 129 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH-H---HHHHHHHHh-cCCCEEEEec-chHHH--h---cC-CCCHHHHH-HHHHHHHH
Confidence 4567777776 777999999964 2 345666655 8998876654 44432 1 11 45666544 44455677
Q ss_pred HHHhcCcccc
Q 003601 101 VYKWFDISFD 110 (808)
Q Consensus 101 ~~~~lgI~~D 110 (808)
++.++|+.++
T Consensus 130 ~~lA~G~Dp~ 139 (368)
T PRK12285 130 DLIALGFDPD 139 (368)
T ss_pred HHHHhCCCcc
Confidence 8889999887
No 128
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=93.66 E-value=0.23 Score=53.33 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=50.1
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
|.+++ -|+|.+||||..++ + -.+.+.+ ..|+++++..+ |.|..-. ...++++ +.++...+..++.++
T Consensus 2 i~tG~-~PTG~lHLG~~~~a-l--~~~~~lQ-~ag~~~~~~Ia-D~ha~t~------~~~~~~~-~~~~~~~~~~~~lA~ 68 (280)
T cd00806 2 VLSGI-QPSGSLHLGHYLGA-F--RFWVWLQ-EAGYELFFFIA-DLHALTV------KQLDPEE-LRQNTRENAKDYLAC 68 (280)
T ss_pred EEEee-CCCchhhHHHHHHH-H--HHHHHHH-hCCCCEEEEec-chHHHhC------CCCCHHH-HHHHHHHHHHHHHHc
Confidence 33454 67799999998863 3 3444444 44999877654 4444411 1145544 445556778888899
Q ss_pred Ccccc---ccCCCCChHHH
Q 003601 106 DISFD---NFGRTSTPQQT 121 (808)
Q Consensus 106 gI~~D---~f~rT~~~~~~ 121 (808)
|+.++ .|..+.-++|.
T Consensus 69 G~dp~k~~i~~qS~~~~~~ 87 (280)
T cd00806 69 GLDPEKSTIFFQSDVPEHY 87 (280)
T ss_pred CCCcccCEEEEcCCcHHHH
Confidence 99885 23344444443
No 129
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=0.25 Score=56.31 Aligned_cols=94 Identities=15% Similarity=0.262 Sum_probs=60.3
Q ss_pred EEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 25 ~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
.+|-=||-|||.||||||-. |--+ -=|.+..|= |.|+.- ||. .|+.=.++|...++++..+
T Consensus 249 V~TRFPPEPNG~LHIGHaKA--InvN--FgyAk~~~G-~cyLRf-DDT-------------NPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKA--INVN--FGYAKAHGG-VCYLRF-DDT-------------NPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCceeeecchhh--eeec--hhhhhhhCC-eEEEec-CCC-------------CcchhhHHHHHHHHHHHHH
Confidence 46778899999999999974 3222 223333332 333332 332 2444456788899999999
Q ss_pred cCccccccCCCCChHHHHHHHHHHHHHHhCCceee
Q 003601 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (808)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (808)
||..+-.. |.+..|-+..-++-..|+.+|++|.
T Consensus 310 LG~~P~kv--TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGFEPYKV--TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCCCceee--ecchhHHHHHHHHHHHHHhcCceeE
Confidence 99766433 4333555555566668999999995
No 130
>PLN02486 aminoacyl-tRNA ligase
Probab=93.15 E-value=0.58 Score=52.33 Aligned_cols=87 Identities=13% Similarity=-0.012 Sum_probs=53.8
Q ss_pred CCcEEEEeCCCCCCC-cCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (808)
+++++|.++. -|+| .+||||+.. ...++.+++..|..+.+. -+|+ +..+ ..+.+.+++ .++.....
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv~----~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~-~~~~~~e~i-~~~~~en~ 137 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLIP----FMFTKYLQDAFKVPLVIQ-LTDD-----EKFL-WKNLSVEES-QRLARENA 137 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHHH----HHHHHHHHHhCCCeEEEE-ecCH-----HHHh-hcCCCHHHH-HHHHHHHH
Confidence 4678888886 8889 599999653 445555445557666655 3454 2222 235666554 45556677
Q ss_pred HHHHhcCcccc-ccCCCCChHH
Q 003601 100 DVYKWFDISFD-NFGRTSTPQQ 120 (808)
Q Consensus 100 ~~~~~lgI~~D-~f~rT~~~~~ 120 (808)
.++.++|+.++ .|+....+.+
T Consensus 138 ~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 138 KDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred HHHHHhCCCCcceEEEeccHHH
Confidence 77788998886 3444444444
No 131
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.02 E-value=0.45 Score=51.44 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=58.6
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCC-CceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRG-YNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G-~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
.++.|.|+. -|+|.+||||..+. + -.+++...+ ++++|.. .|.|-.-+- +..+++-...+....-.
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga-~----~~~v~~q~~~~~~f~~I-aDlha~t~~------~~~~~~~l~~~~~e~~a 70 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGA-I----RNWVLLQEEYYECFFFI-ADLHAITVR------QDPTEEDLRQATREVAA 70 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHH-H----HHHHHHhcccCceEEEE-ecHHHhhcC------CCChHHHHHHHHHHHHH
Confidence 345566776 77899999997752 3 455565666 4766543 566643221 23333445555666677
Q ss_pred HHHhcCcccc---ccCCCCChHHHHHHH
Q 003601 101 VYKWFDISFD---NFGRTSTPQQTEACQ 125 (808)
Q Consensus 101 ~~~~lgI~~D---~f~rT~~~~~~~~v~ 125 (808)
++-++||.++ .|..+..++|.+..+
T Consensus 71 ~~LA~GiDP~k~~if~QS~v~e~~eLa~ 98 (314)
T COG0180 71 DYLAVGLDPEKSTIFLQSEVPEHAELAW 98 (314)
T ss_pred HHHHhccCccccEEEEccCchHHHHHHH
Confidence 8889999997 577777788765543
No 132
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=92.11 E-value=0.27 Score=40.06 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.4
Q ss_pred HHHHHH-HhccHHHHHHHHHHHHHHHHH
Q 003601 458 QYLEAM-EKVKLKQGLKTAMSISSEGNA 484 (808)
Q Consensus 458 ~v~~~~-~~~~~~~al~~i~~l~~~~N~ 484 (808)
++.++| ++|+++.|+..|+++++.+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 356788 789999999999999999999
No 133
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=91.76 E-value=0.55 Score=51.61 Aligned_cols=86 Identities=14% Similarity=0.193 Sum_probs=50.2
Q ss_pred cEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003601 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (808)
Q Consensus 23 ~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 102 (808)
+++|.+++ -|+|.+||||..+. + ..++....|+++++..+ |.|-.-. ..+..+..+ ......+..++
T Consensus 2 ~~~v~~G~-~PTG~~HlG~~l~~-~----~~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~~~~~~~-~~~~~~~~~~~ 68 (328)
T TIGR00233 2 KFRVLTGI-QPSGKMHLGHYLGA-I----QTKWLQQFGVELFICIA-DLHAITV-----KDNTDPDAL-RKAREELAADI 68 (328)
T ss_pred CCEEEEee-CCCcHhHHHHHHHH-H----HHHHHHhCCCCEEEEee-cchhhcC-----CCCCCHHHH-HHHHHHHHHHH
Confidence 34566665 78899999997763 3 34455567999877654 4442211 011233333 34445556677
Q ss_pred HhcCcccc---ccCCCCChHHH
Q 003601 103 KWFDISFD---NFGRTSTPQQT 121 (808)
Q Consensus 103 ~~lgI~~D---~f~rT~~~~~~ 121 (808)
-++|+.++ .|..+.-++|.
T Consensus 69 lA~GlDp~k~~if~qS~~~e~~ 90 (328)
T TIGR00233 69 LAVGLDPKKTFIFLQSDYPEHY 90 (328)
T ss_pred HHhCcChhheEEEEcCCcHHHH
Confidence 88999987 34444444443
No 134
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=91.61 E-value=0.19 Score=56.83 Aligned_cols=77 Identities=8% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCCCC-cCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcch--hhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE--YGTATETKAMEDNCSPKEICDKYHVI 97 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~--hG~~i~~~A~~~g~~p~e~~~~~~~~ 97 (808)
.+++.|.++. -|+| .+||||+. + + - ..|++...|++++++.|--+ .|+|.-...++..++.+++. ++...
T Consensus 31 ~~~~~iy~G~-dPT~~sLHlGhlv-~-l--~-~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~-~n~~~ 103 (410)
T PRK13354 31 GKPLTLYLGF-DPTAPSLHIGHLV-P-L--M-KLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQ-HNAKT 103 (410)
T ss_pred CCCcEEEEcc-cCCCCCcchhhHH-H-H--H-HHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHH-HHHHH
Confidence 3456666775 7888 59999965 3 3 2 34555568999988876544 56665444455556655544 34445
Q ss_pred HHHHHHh
Q 003601 98 HKDVYKW 104 (808)
Q Consensus 98 ~~~~~~~ 104 (808)
++.++.+
T Consensus 104 i~~q~~~ 110 (410)
T PRK13354 104 YTEQIFK 110 (410)
T ss_pred HHHHHHH
Confidence 5554444
No 135
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=91.09 E-value=2.7 Score=38.83 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHHHHHhHhCCCCCCCCC-cCCCC----CCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 003601 411 GNFINRVLSFIAKPPGQGYGS-IVPDA----NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (808)
Q Consensus 411 ~Nl~~R~~~~~~k~~~~~~~g-~~p~~----~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~y 485 (808)
.+.+.|+.+++.+.. .++ .++.. ...-.++.++.|+..+..+.+.+..++.+.+++..+.++.+++...|.|
T Consensus 2 qY~~~Ri~nIl~k~~---~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~f 78 (122)
T smart00836 2 QYAHARICSILRKAG---EAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSF 78 (122)
T ss_pred cHHHHHHHHHHHHHH---hcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 356788888877621 111 12210 0011234577888889999888999999999999999999999999999
Q ss_pred HHhhc
Q 003601 486 LQESQ 490 (808)
Q Consensus 486 i~~~~ 490 (808)
++..+
T Consensus 79 y~~v~ 83 (122)
T smart00836 79 YNKCR 83 (122)
T ss_pred HccCc
Confidence 98764
No 136
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.72 E-value=0.26 Score=52.62 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=47.3
Q ss_pred eCCCCCCC-cCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchh--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 28 SALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY--GTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 28 ~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~h--G~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
+++ -|+| .+||||... .-.+.|+++. |++|+++.|-.+. |.|.-+..++.+.++.++ .++...+..++.+
T Consensus 5 ~G~-~PTg~~lHLG~~~~----~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~~a 77 (269)
T cd00805 5 IGF-DPTAPSLHLGHLVP----LMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQLKA 77 (269)
T ss_pred Eee-CCCCCcccHHHHHH----HHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHHHH
Confidence 443 6779 899999764 2367777664 9998777664331 344434444556676655 4445567777777
Q ss_pred cCcc
Q 003601 105 FDIS 108 (808)
Q Consensus 105 lgI~ 108 (808)
+|..
T Consensus 78 ~g~~ 81 (269)
T cd00805 78 ILDF 81 (269)
T ss_pred HHcc
Confidence 7764
No 137
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.50 E-value=0.28 Score=52.45 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=41.7
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
+..+|.|+...+..-- =+....+ ..+.|..+.. -+++ ++|.|||||.+|.|+...+.+ +++.++=++.+
T Consensus 156 ~vp~G~DQ~~~i~l~r-dla~r~n-~~~~p~~l~~-p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITLGR-ELARRFN-GFTIAEGLTI-PLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHHHH-HHHHHhC-CCCCCeEEee-ccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHHHc
Confidence 7899999965433210 0111111 1124544443 4554 799999999999998765543 46667766765
No 138
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=89.84 E-value=0.59 Score=45.22 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=47.6
Q ss_pred HHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC---C-HHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHH
Q 003601 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNC---S-PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAI 127 (808)
Q Consensus 52 ~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~---~-p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~ 127 (808)
+||++|+.||++.|.. +.-+..|...|.++|. | -.++. +.. ++|+ ...|+++.+ +.+.+.++
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIllTRDr~L~-------~r~--k~g~-~~i~i~~~s--~~~Ql~e~ 83 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRILLTRDRELY-------KRA--KLGI-KAILIRSDS--IEEQLAEF 83 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEEEeccHHHH-------HHh--hccC-ceEEEeCCC--HHHHHHHH
Confidence 7999999999999996 3334566667776653 2 12222 111 2333 234666653 44556666
Q ss_pred HHHHHhCCceeeceeeeeccCCCCccc
Q 003601 128 FKKLLDNNWLIENTMQQPYCDTCKRFL 154 (808)
Q Consensus 128 f~~L~~~G~iy~~~~~~~y~~~~~~~l 154 (808)
..++-.++-... +.-=|+.|+.-|
T Consensus 84 ~~~~~l~~~~~~---e~~RCp~CN~~L 107 (165)
T COG1656 84 LARLGLKPRLFP---EFSRCPECNGEL 107 (165)
T ss_pred HHHhccchhccc---ccccCcccCCEe
Confidence 666655542111 122366666544
No 139
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=89.83 E-value=0.86 Score=50.21 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
+++++|.+++ -|+|.+||||+. ++ -.++++++ .|+++++..+ |.|..-.- ..++. -+.++...+..
T Consensus 28 ~~~~~v~~G~-~PTG~lHLG~~~-~~---~~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~~-~i~~~~~~~~~ 93 (329)
T PRK08560 28 KEEPKAYIGF-EPSGKIHLGHLL-TM---NKLADLQK-AGFKVTVLLA-DWHAYLND------KGDLE-EIRKVAEYNKK 93 (329)
T ss_pred CCCCEEEEcc-CCCCcchhhhhH-HH---HHHHHHHH-CCCeEEEEEc-cchhhcCC------CCCHH-HHHHHHHHHHH
Confidence 3455566665 778999999955 32 34666665 5988766654 44432210 03444 44555567888
Q ss_pred HHHhcCcccc
Q 003601 101 VYKWFDISFD 110 (808)
Q Consensus 101 ~~~~lgI~~D 110 (808)
++.++|+.++
T Consensus 94 ~~~A~G~dp~ 103 (329)
T PRK08560 94 VFEALGLDPD 103 (329)
T ss_pred HHHHcCCChh
Confidence 8999999876
No 140
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=89.71 E-value=0.92 Score=49.88 Aligned_cols=67 Identities=12% Similarity=0.092 Sum_probs=37.0
Q ss_pred EEEEeeccccchhcHHHHHhhhCCC----CcccCcEEEEeeee----ecCCCccccccCC-ccChhhhhhcCCCchhHHH
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGE----NWTLMKTISVTEYL----NYESGKFSKSKGI-GVFGNDAKDTNIPVEVWRY 379 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~----~~~~p~~i~~hg~l----~~~G~KMSKS~GN-~I~~~d~l~~~~~~D~lRy 379 (808)
+..+|.|+..+|-. ---+....+. -++.|..++ |.++ -++|+|||||.+| .|+..| +++.+|=
T Consensus 142 ~vpvG~DQ~~h~el-aRdia~r~n~~~~~~f~~P~~l~-~~~~~~l~gl~~~KMSKS~~~s~I~L~D------~~e~I~~ 213 (328)
T TIGR00233 142 LVPVGIDQDQHLEL-TRDLAERFNKKFKNFFPKPESLI-SKFFPRLMGLSGKKMSKSDPNSAIFLTD------TPKQIKK 213 (328)
T ss_pred eeecccccHHHHHH-HHHHHHHhhhhcCcccCCChhhh-ccccCCCCCCCCCcCCCCCCCCeEeecC------CHHHHHH
Confidence 78899999765432 1112222221 123565444 3342 2456899999997 886654 2445555
Q ss_pred HHHh
Q 003601 380 YLLT 383 (808)
Q Consensus 380 ~ll~ 383 (808)
-+.+
T Consensus 214 KI~~ 217 (328)
T TIGR00233 214 KIRK 217 (328)
T ss_pred HHHh
Confidence 4544
No 141
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=89.21 E-value=0.31 Score=52.77 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=28.1
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCc
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGT 69 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~ 69 (808)
++++|.+++ -|+|.+||||+.. + ..+.++++ .|++|.++.|-
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~-~---~~~~~lq~-~g~~~~i~iaD 45 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVP-I---MKLIWLQK-AGFKVIILIAD 45 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHH-H---HHHHHHHH-TTSEEEEEEEH
T ss_pred CCcEEEEeE-CCCCcccchHHHH-H---HHHHHHHh-cCCccceEecc
Confidence 345566665 6779999998763 2 35555555 89999888753
No 142
>PHA02142 putative RNA ligase
Probab=88.59 E-value=1.3 Score=48.83 Aligned_cols=77 Identities=29% Similarity=0.349 Sum_probs=46.5
Q ss_pred eeeEEEEEEEEEEeCCCCCceEEEEEEc-------CC--CccEEEEeCCCCCCChh-----hcCCCEEEE----eeeccc
Q 003601 649 RLDIRVGKITKVQKHPDADALYVEEIDV-------GE--VQPRTVVSGLVKHIPLE-----EMQERMVCV----LCNLKP 710 (808)
Q Consensus 649 ~~~~rvg~i~~~~~hp~a~~l~~~~vd~-------G~--~~~r~i~sg~~~~~~~~-----~l~g~~v~~----~~nlk~ 710 (808)
|-=..|-+|..+++||+||.+=+.+||- |+ ..-+-|-.-+-.+.+.. -|.++.... -.-|+.
T Consensus 7 RkLv~v~~i~~i~pi~~Ad~ie~a~V~gw~vVV~kg~f~~GD~~vY~eiDS~lP~~~~~~~~l~~~~~~~~g~~~~Ri~t 86 (366)
T PHA02142 7 RQLASMRKIADLQPIPGADAIEVATIDGWEVVVKKGEFRVGDDCVYFEIDSLLPTDNPAFRFLETRARIYDGKMRARIKT 86 (366)
T ss_pred eeEEEEEEEeeecccCCCCceeEEEECCEEEEEeccccccCCeEEEecccccccCCchhhhhhhccccccCCcccceEEE
Confidence 4456889999999999999988888862 11 00122222222222211 122111111 225788
Q ss_pred ceecccccceEEeee
Q 003601 711 VAMRGIKSHAMVLCA 725 (808)
Q Consensus 711 ~~~~g~~S~gmll~~ 725 (808)
.++||..||||+|-.
T Consensus 87 ~klRG~iSQGl~lpl 101 (366)
T PHA02142 87 IKLRGQISQGIALPT 101 (366)
T ss_pred EEEeeEEeeeEEecc
Confidence 999999999999874
No 143
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=88.52 E-value=0.44 Score=54.01 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=40.9
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
+..+|.|+.. |...=--+..-.+.. +...+..-.++ .+|+|||||.||.|+..|- ..+++.++=++++
T Consensus 191 i~~gG~DQ~~-ni~~grdla~r~~~~---~~~~l~~plL~~~~G~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 259 (408)
T PRK05912 191 LQLGGSDQWG-NILSGRDLQRRYGGK---PQFGLTMPLLTGLDGKKMGKSEGNAVWLDEE---KTSPYEMYQKWMN 259 (408)
T ss_pred EEeccHHHHH-HHHHHHHHHHHhCCC---CeEEEecCCcCCCCCCcccCCCCCceeCCCC---CCCHHHHHHHHhc
Confidence 7889999964 322111111222211 11122223343 7899999999999999873 3567777777776
No 144
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=88.12 E-value=0.07 Score=63.09 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=47.1
Q ss_pred EEeCCC-CCceEEEEEEcCCCccEEEEeCCCCCCChhhcCCCEEEEeeecccce
Q 003601 660 VQKHPD-ADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVA 712 (808)
Q Consensus 660 ~~~hp~-a~~l~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~~ 712 (808)
|+.+|. +.+|...+.|.|.+..|+|+||+..+|. +|+|+.++.+|| +||.
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~-~pr~ 659 (659)
T PTZ00385 609 CANVRELRRVIMELGQRGGENGLPTAGGRLSEWRI--TLTFAIIRFICG-TPRR 659 (659)
T ss_pred hhhchHHHHHHhceecccCCCCccchhHHHHHHHH--HHhcceeEEEeC-CCCC
Confidence 899999 9999999999999999999999999998 799999999999 8873
No 145
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=88.10 E-value=0.93 Score=51.38 Aligned_cols=68 Identities=12% Similarity=-0.005 Sum_probs=40.2
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeee-ecCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
++++|.|+...+.. =.-+..-.+.. .+ ..+.+-.+ ..+|.|||||.||.||..|= ..+++.++=++++
T Consensus 189 iq~gG~DQ~~ni~~-grdl~~r~~~~--~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 257 (410)
T PRK13354 189 LQIGGTDQWGNILM-GRDLQRKLEGE--EQ-FGLTMPLLEGADGTKMGKSAGGAIWLDPE---KTSPYEFYQFWMN 257 (410)
T ss_pred EEEecHHHHHHHHH-HHHHHHHhCCC--Cc-eEeccCCccCCCCCccCCCCCCceeccCC---CCCHHHHHHHHHc
Confidence 78899999543321 11111222221 22 22233334 37899999999999999873 3456666666665
No 146
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.09 E-value=1.9 Score=48.63 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=57.6
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
|.+++ -|+|.|||||..+. + . -+.+.+...|++++|.. .|-|-.- ...+|.++.+.. ..+..+|-..
T Consensus 5 vlSGi-qPTG~lHLGNylGa-i-k-~~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~lr~~~-~e~aa~~LA~ 71 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGA-I-R-PAIAASRQPGVESFYFL-ADYHALI-------KCDDPARIQRST-LEIAATWLAA 71 (431)
T ss_pred EEEEe-cCCCcchHHHHHHH-H-H-HHHHHHHhCCCcEEEEe-echhhcc-------CCCCHHHHHHHH-HHHHHHHHHh
Confidence 45665 68899999997763 4 2 24455555699986654 3555332 124666655443 4467788899
Q ss_pred Ccccc---ccCCCCChHHHHHHHHHHHHHH
Q 003601 106 DISFD---NFGRTSTPQQTEACQAIFKKLL 132 (808)
Q Consensus 106 gI~~D---~f~rT~~~~~~~~v~~~f~~L~ 132 (808)
|+.++ .|..+.-++|.+. .+++..+-
T Consensus 72 GlDPek~~if~QSdvpeh~EL-~wiL~~it 100 (431)
T PRK12284 72 GLDPERVTFYRQSDIPEIPEL-TWLLTCVA 100 (431)
T ss_pred CCCccceEEEECCcchhHHHH-HHHHHhhh
Confidence 99986 4556666766543 45544443
No 147
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=87.83 E-value=1 Score=48.27 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=43.2
Q ss_pred CCCC-cCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcch-h-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCcc
Q 003601 32 YVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE-Y-GTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (808)
Q Consensus 32 y~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~-h-G~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~ 108 (808)
-|+| .+||||..+ + ..+.+++ ..|++++++.|-.+ . |+|.-+..++.-.++ +-+.++...+..++.++|+.
T Consensus 7 ~PTg~~lHlGh~~~--l--~~~~~lq-~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~-~~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 7 DPTADSLHIGHLIG--L--LTFRRFQ-HAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP-EEVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred cCCCCCccHHHHHH--H--HHHHHHH-HCCCCEEEEEecCceeeCCCCCccccccCCCH-HHHHHHHHHHHHHHHHhcCc
Confidence 5779 699999775 3 3455554 47999888765211 1 333212222233344 44555577788888999987
No 148
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=87.18 E-value=1.1 Score=35.22 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.0
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHHHh
Q 003601 459 YLEAM-EKVKLKQGLKTAMSISSEGNAYLQE 488 (808)
Q Consensus 459 v~~~~-~~~~~~~al~~i~~l~~~~N~yi~~ 488 (808)
+.++| ++++++.|+..++++++.+|.+++.
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~ 32 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLLK 32 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhhc
Confidence 45667 7899999999999999999998853
No 149
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=86.31 E-value=1.8 Score=54.26 Aligned_cols=76 Identities=18% Similarity=0.374 Sum_probs=53.4
Q ss_pred HHHHHHHHHH---HhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccC
Q 003601 122 EACQAIFKKL---LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198 (808)
Q Consensus 122 ~~v~~~f~~L---~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~ 198 (808)
..+++..+.. .+.+-+..-+.....|++|++.... ..||. ||+.-.---.|..||..+.+.+-....|+.|
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~----~fCP~--CGs~te~vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE----NRCPD--CGTHTEPVYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc----ccCcc--cCCcCCCceeCccCCCccCCCccccccCCCC
Confidence 4455555433 2344455667778899999987653 38999 9986533448999999876654335689999
Q ss_pred CCCcE
Q 003601 199 RNAPQ 203 (808)
Q Consensus 199 g~~~~ 203 (808)
|.++.
T Consensus 716 Gtplv 720 (1337)
T PRK14714 716 DVELT 720 (1337)
T ss_pred CCccc
Confidence 98876
No 150
>PLN02886 aminoacyl-tRNA ligase
Probab=86.20 E-value=3.3 Score=46.35 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=52.4
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
|.+++ -|+|.+||||..++ + .-+.++++ |++++|. =.|-|-.-+ ..++.++-+ +...+..+|-++
T Consensus 49 v~sGi-qPSG~lHLGnylGa-i--~~~v~lQ~--~~~~~~~-IADlHAlt~-------~~~~~~lr~-~~~~~~a~~lA~ 113 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGA-I--KNWVALQE--TYDTFFC-VVDLHAITL-------PHDPRELGK-ATRSTAAIYLAC 113 (389)
T ss_pred EEEEE-CCCCccHHHHHHHH-H--HHHHHHhc--cCCEEEE-EecHHHhhC-------CCCHHHHHH-HHHHHHHHHHHc
Confidence 34554 66699999997763 4 34445544 8887544 456665421 236665544 344567788999
Q ss_pred Ccccc---ccCCCCChHHHHH
Q 003601 106 DISFD---NFGRTSTPQQTEA 123 (808)
Q Consensus 106 gI~~D---~f~rT~~~~~~~~ 123 (808)
|+.++ .|..+..++|.+.
T Consensus 114 GlDP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 114 GIDPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred CcCccceEEEEeCCCchhHHH
Confidence 99987 4666666676544
No 151
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=85.58 E-value=0.57 Score=45.25 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=60.6
Q ss_pred HHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC---C-HHHHHHHHHHHHHHHHHhcCcccc-ccCCCCChHHHHHHHH
Q 003601 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNC---S-PKEICDKYHVIHKDVYKWFDISFD-NFGRTSTPQQTEACQA 126 (808)
Q Consensus 52 ~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~---~-p~e~~~~~~~~~~~~~~~lgI~~D-~f~rT~~~~~~~~v~~ 126 (808)
++||+|+.||||.+..+.++ ..|...|.++|. | ..++. ++.....- .+..+. ...+...+
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D--~~il~~A~~e~RillTrd~~l~-----------~~~~~~~~~~li~~~--~~~~QL~e 76 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDD--DEILELAREEGRILLTRDRDLL-----------KRRRVSGGVILIRSD--DPEEQLRE 76 (147)
T ss_pred HHHHHHHCCCcEEEeCCCCh--HHHHHHhhhCCeEEEECCHHHH-----------HHhhccCCEEEEcCC--CHHHHHHH
Confidence 68999999999999986644 456677777664 1 12222 12222111 223222 22333444
Q ss_pred HHHHHHhCCceeeceeeeeccCCCCccc---ccccccccCCCCCCCCC-CcCCchhhccCCCCCc
Q 003601 127 IFKKLLDNNWLIENTMQQPYCDTCKRFL---ADRLVEGTCPFEGCNYE-SARGDQCENCGKLLNA 187 (808)
Q Consensus 127 ~f~~L~~~G~iy~~~~~~~y~~~~~~~l---~d~~v~g~cp~~~c~~~-~~~g~~ce~cG~~l~~ 187 (808)
+++.+ |+-.......-=|+.|+.-| +...|.+..|. -... ...--+|..||+.+..
T Consensus 77 v~~~~---~l~~~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~--~v~~~~~~f~~C~~C~kiyW~ 136 (147)
T PF01927_consen 77 VLERF---GLKLRLDPIFSRCPKCNGPLRPVSKEEVKDRVPP--YVYETYDEFWRCPGCGKIYWE 136 (147)
T ss_pred HHHHc---CCccccCCCCCccCCCCcEeeechhhccccccCc--cccccCCeEEECCCCCCEecc
Confidence 44333 33332222233488887765 33345555554 1110 0113478999998875
No 152
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=85.14 E-value=1 Score=48.09 Aligned_cols=67 Identities=19% Similarity=0.107 Sum_probs=42.0
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
+..+|.|+..++..- -=+....+. ..| ..+.|.++. ++|+|||||.+|.+| ..+. -+++.++=++.+
T Consensus 154 l~~~G~DQ~~~i~~~-rd~a~r~~~--~~~-~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~---dsp~~i~~Ki~~ 221 (269)
T cd00805 154 LQLGGSDQRGNITLG-RDLIRKLGY--KKV-VGLTTPLLTGLDGGKMSKSEGNAIW-DPVL---DSPYDVYQKIRN 221 (269)
T ss_pred eeEecHHHHHHHHHH-HHHHHHhCC--CCc-EEEeeccccCCCCCcccCCCCCccc-ccCC---CCHHHHHHHHHc
Confidence 789999997544321 111112232 222 345666764 899999999999998 4443 357777777766
No 153
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=84.14 E-value=1.9 Score=48.91 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=43.8
Q ss_pred CcEEEEeCCCCCCCc-CcchHhhhhhhHHHHHHHHHHHCCCceeEecCc-ch-hhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003601 22 RNILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGT-DE-YGTATETKAMEDNCSPKEICDKYHVIH 98 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~-lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~-D~-hG~~i~~~A~~~g~~p~e~~~~~~~~~ 98 (808)
+++.|.+++ -|+|+ +||||+. + + ..+.+++ ..|++++++.|- +- .|+|.-....+...+.+ .+..+.+.+
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv-~-l--~~l~~lQ-~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e-~i~~n~~~i 104 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLV-P-L--LKLRRFQ-DAGHKPIALIGGFTGMIGDPSGKSETRKLLTRE-QVAENAETI 104 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHH-H-H--HHHHHHH-HCCCcEEEEEcCceeEcCCCCCCchhhccCCHH-HHHHHHHHH
Confidence 445566775 78895 9999977 3 2 3555554 479998777643 11 13332122223344433 344555556
Q ss_pred HHHHHhcCccc
Q 003601 99 KDVYKWFDISF 109 (808)
Q Consensus 99 ~~~~~~lgI~~ 109 (808)
++++ +.++.+
T Consensus 105 ~~ql-~~~ld~ 114 (408)
T PRK05912 105 KEQL-FKFLDF 114 (408)
T ss_pred HHHH-HHhcCc
Confidence 6665 445544
No 154
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.46 E-value=0.56 Score=52.86 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=37.7
Q ss_pred EEEEeeccccchhcHHHHHhhh----CC-CCcccCcEEEE-e-eeee-cCCCccccccCCccChhhhhhcCCCchhHHHH
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLG----TG-ENWTLMKTISV-T-EYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYY 380 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a----~g-~~~~~p~~i~~-h-g~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ 380 (808)
+--+|.|+...+-+ ---+... .| ..++.|..++. | ..+. ++|+|||||.+|.|...| ++|.+|--
T Consensus 151 ~VPVG~DQ~qHlEL-aRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kK 223 (431)
T PRK12284 151 KVPVGRDQIQHIEM-ARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA------PREELKKA 223 (431)
T ss_pred EEEEcchhHHHHHH-HHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC------CHHHHHHH
Confidence 56789999754322 1111111 11 12345665553 2 2343 789999999999996643 24455555
Q ss_pred HHh
Q 003601 381 LLT 383 (808)
Q Consensus 381 ll~ 383 (808)
+.+
T Consensus 224 I~~ 226 (431)
T PRK12284 224 IFS 226 (431)
T ss_pred Hhc
Confidence 544
No 155
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=82.38 E-value=1.1 Score=50.26 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=43.9
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (808)
+++.|.+++ -|+|.+||||. ++..--+..+ ...|++|+++.+ |-|..- -.+.|.++.++ ......+..+
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~g---~i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~----~~~~g~~l~~i-~~~~~~~~~~ 133 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQG---ILKAINVNKL-TKAGCVFVFWVA-DWFALL----NNKMGGDLEKI-RKVGEYFIEV 133 (383)
T ss_pred CCCEEEEEE-CCCCcccccch---HhHhHHHHHH-HhCCCeEEEEEc-cceeec----CCCCCCCHHHH-HHHHHHHHHH
Confidence 344444554 67799999993 2322334444 455999877754 222211 01223344444 4455566777
Q ss_pred HHhcCcccc
Q 003601 102 YKWFDISFD 110 (808)
Q Consensus 102 ~~~lgI~~D 110 (808)
|..+|+.++
T Consensus 134 ~~A~GlDp~ 142 (383)
T PTZ00126 134 WKAAGMDMD 142 (383)
T ss_pred HHHhCCCcc
Confidence 888888876
No 156
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=82.34 E-value=3.4 Score=46.42 Aligned_cols=66 Identities=18% Similarity=0.064 Sum_probs=37.8
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-c-CC-CccccccCC-ccChhhhhhcCCCchhHHHHHHh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ES-GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~-~G-~KMSKS~GN-~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
+..+|.|+..+|-+- --+....+.. .+..++.|.++. + +| +|||||.+| .|+..| +++.+|=-+.+
T Consensus 213 ivpvG~DQ~~~~~La-Rdia~~~~~~--~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D------spe~I~kKI~k 282 (383)
T PTZ00126 213 ICQLGMDQRKVNMLA-REYCDKKKIK--KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED------SEEDVNRKIKK 282 (383)
T ss_pred EEEeCccHHHHHHHH-HHHHHHhCCC--CCceeecccccccCCCCCCCCCcCCCCCeecCCC------CHHHHHHHHHh
Confidence 677999997766431 2222233321 122344566664 5 45 799999987 587654 24455555544
No 157
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=82.19 E-value=0.99 Score=49.71 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=40.6
Q ss_pred eCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCc
Q 003601 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (808)
Q Consensus 28 ~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI 107 (808)
+++ -|+|.+||||..+. + .-.+++...|. |++. =.|.|.. .. ...++.++. ++......++.++|+
T Consensus 7 sG~-~PTG~~HLGn~l~~-~---~~~~~lQ~~~~-~~i~-IaD~ha~--~~----~~~~~~~i~-~~~~~~~~~~lA~G~ 72 (333)
T PRK12282 7 TGD-RPTGKLHLGHYVGS-L---KNRVALQNEHE-QFVL-IADQQAL--TD----NAKNPEKIR-RNILEVALDYLAVGI 72 (333)
T ss_pred Eee-CCCCcchHHHHHHH-H---HHHHHHHhCCC-EEEE-EccchhH--hC----CCCCHHHHH-HHHHHHHHHHHHhCc
Confidence 443 56799999998763 3 23334455565 5433 3677732 11 134555554 444556677788898
Q ss_pred ccc
Q 003601 108 SFD 110 (808)
Q Consensus 108 ~~D 110 (808)
.++
T Consensus 73 dp~ 75 (333)
T PRK12282 73 DPA 75 (333)
T ss_pred Chh
Confidence 886
No 158
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=82.01 E-value=0.99 Score=48.52 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=32.5
Q ss_pred EEEEeeccccchhcHHHHHhhhCC----CCcccCcEEEE-eeeee-cCC--CccccccC-CccChhh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTG----ENWTLMKTISV-TEYLN-YES--GKFSKSKG-IGVFGND 366 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g----~~~~~p~~i~~-hg~l~-~~G--~KMSKS~G-N~I~~~d 366 (808)
+..+|.|+..++.. ---+....+ ..++.|..+++ ..++. ++| .|||||.+ |.|+..|
T Consensus 140 ~vpvG~DQ~~h~~l-~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 140 LVPVGIDQDPHLEL-TRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred EEeeccccHHHHHH-HHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 55669999654432 111222222 11345655543 14553 565 59999999 9998765
No 159
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=81.58 E-value=1.3 Score=48.81 Aligned_cols=54 Identities=30% Similarity=0.319 Sum_probs=33.6
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCCC--cccccc-CCccChhh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG--KFSKSK-GIGVFGND 366 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G~--KMSKS~-GN~I~~~d 366 (808)
+..+|.|+..++.. ---+....+. ..|.. +.|.++. ++|. |||||. +|.|+..|
T Consensus 171 ~vpvG~DQ~~h~~l-~Rdia~~~n~--~~p~~-l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 171 IAVGGMDQRKIHML-AREVLPKLGY--KKPVC-IHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred EEEechhHHHHHHH-HHHhhHhcCC--CCceE-EEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 78899999754322 1122222332 23433 3456664 7776 999999 99998865
No 160
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.30 E-value=0.9 Score=50.68 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=38.8
Q ss_pred EEEEeeccccchhc---HHHHHhhhCCCCcccCcEEEEeeee-ecCCCcccccc-CCccChhhhhhcCCCchhHHHHHHh
Q 003601 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSK-GIGVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 309 vh~~GkDii~fH~i---~~pa~l~a~g~~~~~p~~i~~hg~l-~~~G~KMSKS~-GN~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
+..+|.|+..++.+ +-+.+-...|. +.|..++ |-++ .++|.|||||. +|.|...| +++.+|=-+.+
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf--~~P~~l~-~~~lpgL~G~KMSkS~~~s~I~L~D------~p~~I~kKI~k 276 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGF--IKPSSTY-HKFMPGLTGGKMSSSKPESAIYLTD------DPETVKKKIMK 276 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCC--CCchhHh-hhcccCCCCCcCCCCCCCCeeeccC------CHHHHHHHHHh
Confidence 67899999754432 11222112243 4565544 4566 48899999998 67887754 24445554544
No 161
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.17 E-value=5.2 Score=44.16 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=46.6
Q ss_pred eCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCc
Q 003601 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (808)
Q Consensus 28 ~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI 107 (808)
+++ -|+|.+||||..+. +. -+.++++ +++|+++.+ |-|-.-. ..+++++ ..+...+..++.++|+
T Consensus 6 ~G~-~PTG~lHLG~~~g~-~~--~~~~lQ~--~~~~~~~Ia-D~ha~t~-------~~~~~~i-~~~~~~~~~~~lA~Gl 70 (333)
T PRK00927 6 SGI-QPTGKLHLGNYLGA-IK--NWVELQD--EYECFFCIA-DLHALTV-------PQDPEEL-RENTRELAADYLACGI 70 (333)
T ss_pred Eee-CCCccchHHhHHHH-HH--HHHHHHh--cCCeEEEEe-cHHHHhC-------CCCHHHH-HHHHHHHHHHHHeEcc
Confidence 443 67799999998863 42 3555554 478877663 4443221 1244444 4445667788889999
Q ss_pred ccc---ccCCCCChHH
Q 003601 108 SFD---NFGRTSTPQQ 120 (808)
Q Consensus 108 ~~D---~f~rT~~~~~ 120 (808)
.++ .|..+.-++|
T Consensus 71 Dp~k~~if~qS~~~~~ 86 (333)
T PRK00927 71 DPEKSTIFVQSHVPEH 86 (333)
T ss_pred ChhheEEEEeCCCchh
Confidence 886 3444444444
No 162
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.12 E-value=1.1 Score=49.44 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=38.1
Q ss_pred EEEEeeccccchhcHHHHHhhhCC----CCcccCcEEEEe--eeee-cCCC--ccccccC---CccChhhhhhcCCCchh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTG----ENWTLMKTISVT--EYLN-YESG--KFSKSKG---IGVFGNDAKDTNIPVEV 376 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g----~~~~~p~~i~~h--g~l~-~~G~--KMSKS~G---N~I~~~d~l~~~~~~D~ 376 (808)
+..+|.|+..++-+- --+....+ .-++.|..++.. ..+. ++|. |||||.+ |.|...| +++.
T Consensus 141 ivpvG~DQ~~h~ela-Rdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D------~~~~ 213 (333)
T PRK00927 141 LVPVGEDQKQHLELT-RDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD------DPKT 213 (333)
T ss_pred EEeeccchHHHHHHH-HHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC------CHHH
Confidence 788999997654321 11111111 112356555532 3343 6776 9999999 8887754 2445
Q ss_pred HHHHHHh
Q 003601 377 WRYYLLT 383 (808)
Q Consensus 377 lRy~ll~ 383 (808)
++=-+.+
T Consensus 214 I~~KI~~ 220 (333)
T PRK00927 214 IAKKIKK 220 (333)
T ss_pred HHHHHHh
Confidence 5555544
No 163
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=80.03 E-value=2.8 Score=45.29 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=32.3
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCC--cccCcEEEEeeeee-cCCC-ccccccCC-ccChhhh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGEN--WTLMKTISVTEYLN-YESG-KFSKSKGI-GVFGNDA 367 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~--~~~p~~i~~hg~l~-~~G~-KMSKS~GN-~I~~~d~ 367 (808)
+.++|.|+...+..- --+....+.. .+.| ..+.+.++. ++|. |||||.+| .|+..|-
T Consensus 152 ~~~~G~DQ~~~~~l~-rd~a~k~~~~~~~~~p-~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELA-RDLARKFNYKEIFPKP-AGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHH-HHHHhhhcccccccCc-hheeeccccccCCccccCccCCccEEEEecc
Confidence 789999996543211 0111112211 1234 444455665 7898 99999999 8877663
No 164
>PRK04023 DNA polymerase II large subunit; Validated
Probab=77.23 E-value=4.1 Score=49.90 Aligned_cols=78 Identities=22% Similarity=0.507 Sum_probs=51.8
Q ss_pred CCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEEeeccceeEe
Q 003601 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLD 213 (808)
Q Consensus 134 ~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~ 213 (808)
+|.+ .-+....+|++|++.. ..-.||. ||....--.+|..||....+ ..|+.||.++.-. ...-++
T Consensus 617 ~g~~-eVEVg~RfCpsCG~~t----~~frCP~--CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~~~--s~~~i~ 682 (1121)
T PRK04023 617 KGTI-EVEIGRRKCPSCGKET----FYRRCPF--CGTHTEPVYRCPRCGIEVEE-----DECEKCGREPTPY--SKRKID 682 (1121)
T ss_pred CCce-eecccCccCCCCCCcC----CcccCCC--CCCCCCcceeCccccCcCCC-----CcCCCCCCCCCcc--ceEEec
Confidence 5655 4455667999999875 3468999 99876566799999987654 4599999877532 233345
Q ss_pred ccchHHHHHHHH
Q 003601 214 LPALRNKLEEYI 225 (808)
Q Consensus 214 l~~~~~~l~~~~ 225 (808)
+..+-.+..+.+
T Consensus 683 l~~~~~~A~~~l 694 (1121)
T PRK04023 683 LKELYDRALENL 694 (1121)
T ss_pred HHHHHHHHHHHh
Confidence 554433333333
No 165
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.30 E-value=1.2 Score=48.33 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=31.0
Q ss_pred EEEEeeccccchhcHHHHHhhhCC----CCcccCcEEEEee--eee-cCC-CccccccCC-ccChhh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTG----ENWTLMKTISVTE--YLN-YES-GKFSKSKGI-GVFGND 366 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g----~~~~~p~~i~~hg--~l~-~~G-~KMSKS~GN-~I~~~d 366 (808)
+--+|.|+.. |-.+---+....+ .-+++|..++ |. ++. ++| .|||||.+| +|...|
T Consensus 148 ~VPVG~DQ~q-HleLtRDiA~rfn~~y~~~f~~P~~~~-~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 148 LVPVGEDQDQ-HLELTRDIARRFNHLYGEVFPLPEALI-SKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred eeccCCCchH-HHHHHHHHHHHHHhhcCCccCCccccc-cCCCcccCCCCCCcccccCCCCeeeccC
Confidence 4457888864 3222111111111 2234565444 44 654 788 899999999 775543
No 166
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.12 E-value=1.1 Score=50.05 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=50.8
Q ss_pred EEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHH-CCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 003601 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRL-RGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (808)
Q Consensus 26 vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~-~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (808)
|.+++ -|+|.+||||..+ .+ ..|..+ .|++++|. =.|-|-.-+ ...++.++ ..+...+..++.+
T Consensus 5 v~sGi-qPSG~~HLGnylG-~i-----k~wv~lq~~~~~~~~-IADlHAlt~------~~~d~~~i-r~~~~~~~a~~lA 69 (398)
T PRK12283 5 VLSGM-RPTGRLHLGHYHG-VL-----KNWVKLQHEYECFFF-VADWHALTT------HYETPEVI-EKNVWDMVIDWLA 69 (398)
T ss_pred EEEEe-CCCCcchHHHHHH-HH-----HHHHHHhcCCcEEEE-eecHHHHhC------CCCCHHHH-HHHHHHHHHHHHH
Confidence 34554 6779999999776 23 344443 48886544 456663321 11255544 3444567889999
Q ss_pred cCcccc---ccCCCCChHHHH
Q 003601 105 FDISFD---NFGRTSTPQQTE 122 (808)
Q Consensus 105 lgI~~D---~f~rT~~~~~~~ 122 (808)
+|+.++ .|..+..++|.+
T Consensus 70 ~GlDP~k~~if~QS~v~eh~e 90 (398)
T PRK12283 70 AGVDPAQATLFIQSKVPEHAE 90 (398)
T ss_pred cCCCccceEEEECCCchHHHH
Confidence 999986 566666777643
No 167
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=75.96 E-value=2.4 Score=47.59 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=26.9
Q ss_pred cEEEEeCCCCCCC-cCcchHhhhhhhHHHHHHHHHHHCCCceeEecC
Q 003601 23 NILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (808)
Q Consensus 23 ~~~vt~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G 68 (808)
++.+.++. -|+| .+||||+.. + -.++++++ .|++|+++.|
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~--l--~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP--L--LKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH--H--HHHHHHHH-CCCcEEEEEe
Confidence 34455554 7789 899999763 2 34555554 7999987764
No 168
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=74.93 E-value=37 Score=41.07 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 003601 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484 (808)
Q Consensus 405 ~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~ 484 (808)
+-...+...++|+..++.+... ...+.+.. ..-..+.++.|.+.+..+...+..++..-++..++..+..|....+.
T Consensus 566 ~~~~~l~~~~kRv~NIl~k~~~-~~~~~v~~--~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~ 642 (682)
T PRK01233 566 PEFKALAAANKRVSNILKKAEG-KVSGEVDP--ALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVDA 642 (682)
T ss_pred hhHHHHHHHHHHHHHHHhcccc-ccCCccCh--hHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHHH
Confidence 3456677788999998877211 01112211 12234567888888888888888888888999999999999999999
Q ss_pred HHHhh
Q 003601 485 YLQES 489 (808)
Q Consensus 485 yi~~~ 489 (808)
||+..
T Consensus 643 FFD~V 647 (682)
T PRK01233 643 FFDNV 647 (682)
T ss_pred HhCCC
Confidence 99875
No 169
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=74.11 E-value=12 Score=41.42 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred EEEEeeccccchhcH---HHHHhhhCCCC-cccCcEEEEe-eeee-cCC-CccccccCCccChhh
Q 003601 309 YQFMGKDNVPFHTVM---FPSTLLGTGEN-WTLMKTISVT-EYLN-YES-GKFSKSKGIGVFGND 366 (808)
Q Consensus 309 vh~~GkDii~fH~i~---~pa~l~a~g~~-~~~p~~i~~h-g~l~-~~G-~KMSKS~GN~I~~~d 366 (808)
+..+|.|+..+|.+. -+-+-.-.+-+ ...|..++.+ .++. ++| .|||||.+|.|+..|
T Consensus 145 ~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 145 LVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred EEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 788999997655431 11111111111 1234444433 3443 576 799999999987654
No 170
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=71.20 E-value=7.8 Score=43.55 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.6
Q ss_pred cCCCccccccCCccChhh
Q 003601 349 YESGKFSKSKGIGVFGND 366 (808)
Q Consensus 349 ~~G~KMSKS~GN~I~~~d 366 (808)
.+|.|||||.||.||.++
T Consensus 217 ~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 217 ADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCCCCccCCCCCcccCCc
Confidence 679999999999988754
No 171
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=66.84 E-value=64 Score=38.71 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHH
Q 003601 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAE 450 (808)
Q Consensus 371 ~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~ 450 (808)
+|..|.++--|......--|+..+-+.+....+.+-...+-..++|+..++.+... ...+.+... .-..+.++.|.+
T Consensus 541 g~~~dii~AVL~~~~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~-~~~~~v~~~--Lf~~~~E~~L~~ 617 (691)
T COG0751 541 GYRKDIIDAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEK-KLSGTVDPS--LFEEDAEKALFE 617 (691)
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhccc-ccCCccChH--HhcCHHHHHHHH
Confidence 45555555544442211123334444444433333344556788999998887211 112222211 223456788999
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 003601 451 KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (808)
Q Consensus 451 ~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~ 489 (808)
.+..+..++..++..-++..|+..+.+|..-...||+..
T Consensus 618 a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~V 656 (691)
T COG0751 618 ALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNV 656 (691)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCc
Confidence 999999999999999999999999999988899999874
No 172
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=66.46 E-value=18 Score=40.67 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=27.6
Q ss_pred ccCcEEEE-eeeee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003601 336 TLMKTISV-TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 336 ~~p~~i~~-hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
+.|..++. +.++. ++|+|||||.+|.|...| ++|.+|=-+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 35554442 34554 789999999999987644 34556655554
No 173
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=66.38 E-value=74 Score=38.70 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=71.1
Q ss_pred CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHH
Q 003601 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAE 450 (808)
Q Consensus 371 ~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~ 450 (808)
+|+.|.++--+.....---|+.-..+.+.+....+-...+...++|+..++.+..+ .+.+.+.. ..-..+.++.|.+
T Consensus 542 g~~~dvi~AVl~~~~~~~~~~~~r~~aL~~~~~~~~~~~l~~a~kRv~NIl~k~~~-~~~~~v~~--~l~~~~~E~~L~~ 618 (691)
T TIGR00211 542 GIDVDVIQAVLARRETDPADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNP-VLSSEIQA--NLFKEPKEKALFE 618 (691)
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhcccc-cccCccCh--hHcCCHHHHHHHH
Confidence 46666666555321000011111223333333334456777888999999877211 01111211 1223456788888
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003601 451 KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (808)
Q Consensus 451 ~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (808)
.+..+...+...+..-++..++..+..|....+.||+..-
T Consensus 619 ~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 658 (691)
T TIGR00211 619 AVLAIKMNAQESFESGDYETALEALAELRAPVDEFFDSVM 658 (691)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhCCCE
Confidence 8888877778778777999999999999999999998753
No 174
>PLN02486 aminoacyl-tRNA ligase
Probab=65.07 E-value=3.7 Score=46.03 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=35.9
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cCC--CccccccCC-ccChhhhhhcCCCchhHHHHHHh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~G--~KMSKS~GN-~I~~~d~l~~~~~~D~lRy~ll~ 383 (808)
+--+|.|+..++-+- --+....+. ..| .+++|.++. +.| .|||||.+| .|+..| +++.++=.+.+
T Consensus 222 lVPvG~DQd~~~~lt-Rdia~r~~~--~kp-~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 290 (383)
T PLN02486 222 LIPCAIDQDPYFRMT-RDVAPRLGY--YKP-ALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINK 290 (383)
T ss_pred eeecccchHHHHHHH-HHHHHHhCC--CCc-ceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhc
Confidence 344688886543321 112222332 234 344456654 666 699999988 687765 24555555544
No 175
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=61.51 E-value=28 Score=42.01 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=45.1
Q ss_pred cEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHH-HHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003601 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARF-CRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (808)
Q Consensus 23 ~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~-~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (808)
++.|.+++ -|+|.+||||. ++ . .+..+ ++..|++|+|..+ |-|..- -.+.|.+...+.. +...+..+
T Consensus 32 ~~rv~sGi-~PTG~lHLGng---~~-~-aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~~~ 99 (682)
T PTZ00348 32 LIRCYDGF-EPSGRMHIAQG---IF-K-AVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLIEV 99 (682)
T ss_pred CCEEEEee-CCCCcCeeccH---HH-H-HHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHHHH
Confidence 34455665 77799999993 22 2 22222 2356999876643 333221 1223334444332 23456678
Q ss_pred HHhcCcccc--ccCCCC
Q 003601 102 YKWFDISFD--NFGRTS 116 (808)
Q Consensus 102 ~~~lgI~~D--~f~rT~ 116 (808)
|.++|+.++ .|++.+
T Consensus 100 ~lA~GlDpeK~~~~~qS 116 (682)
T PTZ00348 100 WKAAGMDMDKVLFLWSS 116 (682)
T ss_pred HHHcCCCccceEEEECc
Confidence 899999987 344544
No 176
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=59.54 E-value=13 Score=36.02 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=29.7
Q ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Q 003601 454 KYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQ 487 (808)
Q Consensus 454 ~~~~~v~~~~-~~~~~~~al~~i~~l~~~~N~yi~ 487 (808)
.+..++.++| ++|+++.|+..|+++++.+|.+++
T Consensus 33 ~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 3457788899 689999999999999999999875
No 177
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=58.24 E-value=1.1e+02 Score=38.75 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCCchhHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCcCChHHHHHHHH
Q 003601 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAE 450 (808)
Q Consensus 371 ~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~~p~~~~~~~~~~d~~l~~ 450 (808)
++..|.++--+......--|+.-..+.+.+..+.+-...+...++|+..++.+. -+..+.. ..-..+.++.|.+
T Consensus 857 G~~~dvI~AVl~~~~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~----~~~~vd~--~Lf~~~~E~~L~~ 930 (1000)
T PRK14908 857 GFDKDEIAAVLPDACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASL----SFSVTDA--SLLLEPAELNLKQ 930 (1000)
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhc----CCCccCh--hhcCCHHHHHHHH
Confidence 577777776664311000122222333333334455667888899999988772 1111111 1222455777888
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 003601 451 KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (808)
Q Consensus 451 ~l~~~~~~v~~~~~~~~~~~al~~i~~l~~~~N~yi~~~ 489 (808)
.+..+...+... +-++..++..+..|....+.||+..
T Consensus 931 a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~V 967 (1000)
T PRK14908 931 ALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEV 967 (1000)
T ss_pred HHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCC
Confidence 777765555554 4588999999999999999999875
No 178
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=56.65 E-value=7.1 Score=25.74 Aligned_cols=8 Identities=50% Similarity=1.265 Sum_probs=3.8
Q ss_pred chhhccCC
Q 003601 176 DQCENCGK 183 (808)
Q Consensus 176 ~~ce~cG~ 183 (808)
.+|..||.
T Consensus 17 ~fC~~CG~ 24 (26)
T PF13248_consen 17 KFCPNCGA 24 (26)
T ss_pred ccChhhCC
Confidence 34555544
No 179
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=56.11 E-value=8.6 Score=38.35 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=19.3
Q ss_pred CchhhccCCCCCccccC--CCccccCCCCcEE
Q 003601 175 GDQCENCGKLLNATDLK--DPKCKVCRNAPQI 204 (808)
Q Consensus 175 g~~ce~cG~~l~~~el~--~p~c~~~g~~~~~ 204 (808)
+-.|+.||.-++-.|.. +-.|+.||.+++.
T Consensus 117 ~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEE 148 (178)
T ss_pred EEECCCCCcEEeHHHHhhcCCcCCCCCCCCee
Confidence 34566777655443332 4679999988875
No 180
>PF12773 DZR: Double zinc ribbon
Probab=54.85 E-value=12 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=17.2
Q ss_pred CCchhhccCCCCCccccCCCccccCCCCc
Q 003601 174 RGDQCENCGKLLNATDLKDPKCKVCRNAP 202 (808)
Q Consensus 174 ~g~~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (808)
...+|..||..+...+....+|..||+.+
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAEN 39 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCC
Confidence 35677777777663333344677777653
No 181
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=54.01 E-value=7.9 Score=29.28 Aligned_cols=29 Identities=17% Similarity=0.626 Sum_probs=17.0
Q ss_pred hhccCCCCCccccC-CCccccCCCCcEEee
Q 003601 178 CENCGKLLNATDLK-DPKCKVCRNAPQIRD 206 (808)
Q Consensus 178 ce~cG~~l~~~el~-~p~c~~~g~~~~~~~ 206 (808)
|.+||..+.-.+.. ..+|+.||++..+..
T Consensus 6 C~~CG~~~~~~~~~~~~~Cp~CG~~~~~~~ 35 (46)
T PRK00398 6 CARCGREVELDEYGTGVRCPYCGYRILFKE 35 (46)
T ss_pred CCCCCCEEEECCCCCceECCCCCCeEEEcc
Confidence 55566654333322 567888888776544
No 182
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=51.89 E-value=17 Score=33.27 Aligned_cols=47 Identities=28% Similarity=0.424 Sum_probs=31.2
Q ss_pred hhccCCCCCccccCCCccccCCCCcEEeeccceeEeccc-hHHHHHHHHHc
Q 003601 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPA-LRNKLEEYINN 227 (808)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~-~~~~l~~~~~~ 227 (808)
|..||..+..+.| +|..|++.++=.=+-.||..|+. -.+.+..++..
T Consensus 1 CPvCg~~l~vt~l---~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~ 48 (113)
T PF09862_consen 1 CPVCGGELVVTRL---KCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIKN 48 (113)
T ss_pred CCCCCCceEEEEE---EcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHHh
Confidence 4456655554443 68889999987777889988875 34445555544
No 183
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=51.86 E-value=11 Score=45.36 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=30.9
Q ss_pred EEEEeeccccchhcHHHHHhhhCCCCcccCcEEEEeeeee-cC-C-Ccccccc-CCccChhh
Q 003601 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YE-S-GKFSKSK-GIGVFGND 366 (808)
Q Consensus 309 vh~~GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l~-~~-G-~KMSKS~-GN~I~~~d 366 (808)
+..+|.|+..+|-+- --+....|.. +...++.|.++. ++ | .|||||. +|.|...|
T Consensus 178 ivpvG~DQ~qh~eLa-Rdia~~~g~~--~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 178 ICQLGLDQRKVNMLA-REYCDLIGRK--LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred EEEeCccHHHHHHHH-HHHHHHhCCC--CCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 677999997665321 1112223321 111233455553 54 3 6999999 68997755
No 184
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=51.68 E-value=49 Score=28.35 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 003601 455 YVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (808)
Q Consensus 455 ~~~~v~~~~-~~~~~~~al~~i~~l~~~~ 482 (808)
+.+++.++| ++|+++.|+..++++++.+
T Consensus 29 ~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 29 LVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 456788888 7899999999999999764
No 185
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=49.05 E-value=11 Score=24.08 Aligned_cols=8 Identities=50% Similarity=1.286 Sum_probs=4.0
Q ss_pred chhhccCC
Q 003601 176 DQCENCGK 183 (808)
Q Consensus 176 ~~ce~cG~ 183 (808)
.+|..||.
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555554
No 186
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=48.59 E-value=13 Score=44.71 Aligned_cols=23 Identities=22% Similarity=0.732 Sum_probs=10.7
Q ss_pred hhhccCCCCCccccCCCccccCCCCc
Q 003601 177 QCENCGKLLNATDLKDPKCKVCRNAP 202 (808)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (808)
.|.+||..+.+. ..+|..||+++
T Consensus 29 ~Cp~CG~~~~~~---~~fC~~CG~~~ 51 (645)
T PRK14559 29 PCPQCGTEVPVD---EAHCPNCGAET 51 (645)
T ss_pred cCCCCCCCCCcc---cccccccCCcc
Confidence 455555443321 23566666543
No 187
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=48.16 E-value=14 Score=27.81 Aligned_cols=31 Identities=16% Similarity=0.464 Sum_probs=20.9
Q ss_pred hhccCCCCCccccCCCccccCCCCcEEeecc
Q 003601 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208 (808)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~ 208 (808)
|..||..++.......+|+.||..+.++...
T Consensus 5 C~~Cg~~~~~~~~~~irC~~CG~rIlyK~R~ 35 (44)
T smart00659 5 CGECGRENEIKSKDVVRCRECGYRILYKKRT 35 (44)
T ss_pred CCCCCCEeecCCCCceECCCCCceEEEEeCC
Confidence 5567776655444446799999998876643
No 188
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=44.52 E-value=15 Score=28.28 Aligned_cols=32 Identities=16% Similarity=0.644 Sum_probs=21.6
Q ss_pred hhhccCCCCC-ccccCCCccccCCCCcEEeecc
Q 003601 177 QCENCGKLLN-ATDLKDPKCKVCRNAPQIRDTN 208 (808)
Q Consensus 177 ~ce~cG~~l~-~~el~~p~c~~~g~~~~~~~~~ 208 (808)
.|-.||+.++ ......-+|+.||..+.++...
T Consensus 8 ~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R~ 40 (49)
T COG1996 8 KCARCGREVELDQETRGIRCPYCGSRILVKERP 40 (49)
T ss_pred EhhhcCCeeehhhccCceeCCCCCcEEEEeccC
Confidence 4677888775 2233456899999988766543
No 189
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=42.45 E-value=8.3 Score=46.64 Aligned_cols=54 Identities=19% Similarity=0.490 Sum_probs=0.0
Q ss_pred ceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCCcEE
Q 003601 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204 (808)
Q Consensus 140 ~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~ 204 (808)
-+.....|+.|+..-. .-.||. ||....--..|..||..+.+. .|++||.++.-
T Consensus 651 vei~~r~Cp~Cg~~t~----~~~Cp~--CG~~T~~~~~Cp~C~~~~~~~-----~C~~C~~~~~~ 704 (900)
T PF03833_consen 651 VEIGRRRCPKCGKETF----YNRCPE--CGSHTEPVYVCPDCGIEVEED-----ECPKCGRETTS 704 (900)
T ss_dssp -----------------------------------------------------------------
T ss_pred EeeecccCcccCCcch----hhcCcc--cCCccccceeccccccccCcc-----ccccccccCcc
Confidence 3444567888876422 237888 988766667899999866543 79999977653
No 190
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.84 E-value=16 Score=43.84 Aligned_cols=36 Identities=31% Similarity=0.797 Sum_probs=23.7
Q ss_pred eccCCCCcccccccccccCCCCCCCCCCc-CCchhhccCCCCC
Q 003601 145 PYCDTCKRFLADRLVEGTCPFEGCNYESA-RGDQCENCGKLLN 186 (808)
Q Consensus 145 ~y~~~~~~~l~d~~v~g~cp~~~c~~~~~-~g~~ce~cG~~l~ 186 (808)
-||+.|++-+.. ..||. ||++.. ...+|.+||..+.
T Consensus 16 kFC~~CG~~l~~----~~Cp~--CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 16 RFCQKCGTSLTH----KPCPQ--CGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred ccccccCCCCCC----CcCCC--CCCCCCcccccccccCCccc
Confidence 477777776642 46888 887533 3468888887543
No 191
>PRK14529 adenylate kinase; Provisional
Probab=40.99 E-value=1.1e+02 Score=31.77 Aligned_cols=135 Identities=14% Similarity=0.160 Sum_probs=69.4
Q ss_pred cCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhCCceeeceeeeec
Q 003601 67 CGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPY 146 (808)
Q Consensus 67 ~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y 146 (808)
.+-++.|..+..-..+-.+-|.+++-............-|+-.|-|.||. ...+.++..|.+.|. .-....+.
T Consensus 40 ~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iLDGfPRt~-----~Qa~~l~~~l~~~~~--~~~~vi~l 112 (223)
T PRK14529 40 GGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLLDGFPRNK-----VQAEKLWEALQKEGM--KLDYVIEI 112 (223)
T ss_pred cCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEEeCCCCCH-----HHHHHHHHHHHhcCC--CCCEEEEE
Confidence 34466788777777665667777766554433332234466678998886 333445555656552 12223333
Q ss_pred cCCCCccccccc-ccccCCCCCCCCCCcCCchhhccCCCCCccc-----cCCCccccCCCCcEEeeccceeEeccchHHH
Q 003601 147 CDTCKRFLADRL-VEGTCPFEGCNYESARGDQCENCGKLLNATD-----LKDPKCKVCRNAPQIRDTNHLFLDLPALRNK 220 (808)
Q Consensus 147 ~~~~~~~l~d~~-v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~e-----l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~ 220 (808)
...++ .+-+|. -... |..||..+.... .....|..||.+.+.|..++- -+.++.+
T Consensus 113 ~~~~~-~l~~Rl~~R~~---------------c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~---ee~i~~R 173 (223)
T PRK14529 113 LLPRE-VAKNRIMGRRL---------------CKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQD---EEAINKR 173 (223)
T ss_pred ECCHH-HHHHHhhCCcc---------------ccccCCcccccccCCCcccCCcCcCcCCccccCCCCCc---HHHHHHH
Confidence 33322 111221 1123 444443221111 111267777877777766541 1356777
Q ss_pred HHHHHHc
Q 003601 221 LEEYINN 227 (808)
Q Consensus 221 l~~~~~~ 227 (808)
|..|.+.
T Consensus 174 l~~y~~~ 180 (223)
T PRK14529 174 HDIYYDT 180 (223)
T ss_pred HHHHHHc
Confidence 7777763
No 192
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.52 E-value=32 Score=36.45 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEec-Ccch
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYIC-GTDE 71 (808)
Q Consensus 21 ~~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~-G~D~ 71 (808)
.++||+.|+-=--++.+||||+. +++ +..|+... ++|-+|. =||+
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHli-PFi----ftKwlQe~-F~vpLVIqlTDD 128 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLI-PFI----FTKWLQDV-FDVPLVIQLTDD 128 (397)
T ss_pred CCceEEEeCCCCCccccccccch-hHH----HHHHHHHH-hCCceEEEeccc
Confidence 56788888766678999999987 454 77887654 4554443 3444
No 193
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=39.66 E-value=19 Score=45.68 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=27.2
Q ss_pred eeeeEEEEEEEEEEeCCCCCceEEEEEEcCC
Q 003601 648 ARLDIRVGKITKVQKHPDADALYVEEIDVGE 678 (808)
Q Consensus 648 ~~~~~rvg~i~~~~~hp~a~~l~~~~vd~G~ 678 (808)
....++--+|..|.+|+..++|+.++...|.
T Consensus 975 enGklv~~kVt~V~Khrapd~LirIkt~~GR 1005 (1337)
T PRK14714 975 ENGKVVLTDITSVSKHPAPDHLIRFETERGR 1005 (1337)
T ss_pred CCCcEEEeeeeeEEeccCCCcEEEEEecCCc
Confidence 5667888999999999999999999998884
No 194
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.18 E-value=77 Score=30.39 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=46.7
Q ss_pred chHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccccccCCCCCh
Q 003601 39 LGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP 118 (808)
Q Consensus 39 iGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~ 118 (808)
=||-++ +.+++|.++..|++|.+....+.- .|+++.- ..++-.-.+| ...+-
T Consensus 23 DgHd~g----akvia~~l~d~GfeVi~~g~~~tp---------------~e~v~aA---~~~dv~vIgv------Ssl~g 74 (143)
T COG2185 23 DGHDRG----AKVIARALADAGFEVINLGLFQTP---------------EEAVRAA---VEEDVDVIGV------SSLDG 74 (143)
T ss_pred cccccc----hHHHHHHHHhCCceEEecCCcCCH---------------HHHHHHH---HhcCCCEEEE------Eeccc
Confidence 488876 578999999999999987655443 2322221 1122222233 23455
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 003601 119 QQTEACQAIFKKLLDNNW 136 (808)
Q Consensus 119 ~~~~~v~~~f~~L~~~G~ 136 (808)
.|...+..+.+.|.++|.
T Consensus 75 ~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 75 GHLTLVPGLVEALREAGV 92 (143)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 899999999999999885
No 195
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.24 E-value=1.2e+02 Score=28.53 Aligned_cols=66 Identities=14% Similarity=-0.035 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHH
Q 003601 47 LSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (808)
Q Consensus 47 l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~ 126 (808)
+.+++++++++..|++|....+...-. .+..+|.+.+-+ -.+ ....+..|...+..
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~~s~e-~~v~aa~e~~ad-----------------ii~------iSsl~~~~~~~~~~ 72 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLFQTPE-EIARQAVEADVH-----------------VVG------VSSLAGGHLTLVPA 72 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCHH-HHHHHHHHcCCC-----------------EEE------EcCchhhhHHHHHH
Confidence 357999999999999999865543322 233333332211 112 23344567888888
Q ss_pred HHHHHHhCCc
Q 003601 127 IFKKLLDNNW 136 (808)
Q Consensus 127 ~f~~L~~~G~ 136 (808)
+...|.++|.
T Consensus 73 ~~~~L~~~g~ 82 (132)
T TIGR00640 73 LRKELDKLGR 82 (132)
T ss_pred HHHHHHhcCC
Confidence 8888888774
No 196
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=34.96 E-value=32 Score=29.50 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCceeE--------------ecCcchhhHHHHHHH------HHcCCCHHHHHHHHHHHH
Q 003601 51 VFARFCRLRGYNAIY--------------ICGTDEYGTATETKA------MEDNCSPKEICDKYHVIH 98 (808)
Q Consensus 51 v~~R~~r~~G~~V~~--------------v~G~D~hG~~i~~~A------~~~g~~p~e~~~~~~~~~ 98 (808)
=+..+|+.+||+|.- ++|-|..=.-++... ...|++|.|+++...+++
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 467788899998843 444443211122111 235999999998876653
No 197
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.72 E-value=1.7e+02 Score=31.40 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=51.4
Q ss_pred eCCCCCCCcCcchHhhhhhhHHHHHHHHHHHC--CCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 003601 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLR--GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (808)
Q Consensus 28 ~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~--G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (808)
+++ -|+|.+||||-.|+ | -.+.+.+... |-.|+| +=.|-|-. --...|.++ .++.-.....+-+.
T Consensus 18 SGI-QPTG~~HLGNYLGa-i--~~Wv~LQ~~~d~~~~~~f-~vvDlHaI-------Tvp~dp~~l-rq~~~dm~A~lLAc 84 (347)
T KOG2713|consen 18 SGI-QPTGIPHLGNYLGA-I--KPWVQLQNEYDKNILVLF-SVVDLHAI-------TVPQDPAEL-RQATHDMAASLLAC 84 (347)
T ss_pred ecc-CCCCCchhhhhhhh-h--hHHHHHHHHhcCCceEEE-EEeeceee-------cCCCChHHH-HHHHHHHHHHHHHh
Confidence 454 56699999999985 4 4555555444 444443 33566632 223455533 34444555667788
Q ss_pred Ccccc---ccCCCCChHHHHHH
Q 003601 106 DISFD---NFGRTSTPQQTEAC 124 (808)
Q Consensus 106 gI~~D---~f~rT~~~~~~~~v 124 (808)
||.+. .|+...-|.|.+..
T Consensus 85 GIdp~Ks~lF~QS~Vpqh~el~ 106 (347)
T KOG2713|consen 85 GIDPEKSSLFVQSDVPQHAELS 106 (347)
T ss_pred ccCcccceeeeeccchHHHHHH
Confidence 99885 57777778887654
No 198
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=33.95 E-value=33 Score=23.98 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=15.4
Q ss_pred hhccCCCCCccccCCCccccCCCCcEEe
Q 003601 178 CENCGKLLNATDLKDPKCKVCRNAPQIR 205 (808)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~~~~ 205 (808)
|..||..++-.....-+|..||..+.++
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~RIlyK 30 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHRILYK 30 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-SEEBE
T ss_pred CCcCCCeeEcCCCCcEECCcCCCeEEEe
Confidence 4556665543222234788899887654
No 199
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=33.31 E-value=19 Score=25.90 Aligned_cols=29 Identities=21% Similarity=0.584 Sum_probs=15.4
Q ss_pred hhccCCCCCcc---ccCCCccccCCCCcEEee
Q 003601 178 CENCGKLLNAT---DLKDPKCKVCRNAPQIRD 206 (808)
Q Consensus 178 ce~cG~~l~~~---el~~p~c~~~g~~~~~~~ 206 (808)
|..||+.++.. -..+.+|..||.+++.|+
T Consensus 4 C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~ 35 (36)
T PF05191_consen 4 CPKCGRIYHIEFNPPKVEGVCDNCGGELVQRK 35 (36)
T ss_dssp ETTTTEEEETTTB--SSTTBCTTTTEBEBEEG
T ss_pred cCCCCCccccccCCCCCCCccCCCCCeeEeCC
Confidence 45556544321 123456777887666553
No 200
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=32.79 E-value=56 Score=35.44 Aligned_cols=68 Identities=15% Similarity=-0.094 Sum_probs=41.4
Q ss_pred EEEE-eeccccchhcHHHHHhhhCCCCcccCcEEEEeeee-ecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcC
Q 003601 309 YQFM-GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR 385 (808)
Q Consensus 309 vh~~-GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lRy~ll~~~ 385 (808)
-|++ |.|++.- +..-..+..++|. +.| .+.++..+ +.+|+||||+.|.. .+.+ + ++.++ +..|+...+
T Consensus 194 ThVvRG~D~l~~-t~~Q~~l~~aLg~--~~P-~y~H~pll~~~~g~kLSKr~~~~-~i~~--~-g~~p~-l~~~l~~lG 263 (299)
T PRK05710 194 THVVRGADLLDS-TPRQIYLQQLLGL--PTP-RYLHLPLVLNADGQKLSKQNGAP-ALDA--A-GPLPV-LAAALRFLG 263 (299)
T ss_pred CEEEeChhhhhc-CHHHHHHHHHcCC--CCC-eEEEeecccCCCCCcccccCCcc-chhh--c-CcCHH-HHHHHHHcC
Confidence 3444 7777531 1111134456665 355 56677776 48999999998764 3444 3 78888 777776543
No 201
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.26 E-value=29 Score=24.22 Aligned_cols=25 Identities=24% Similarity=0.638 Sum_probs=15.4
Q ss_pred hhhccCCCCCccccCCCccccCCCCc
Q 003601 177 QCENCGKLLNATDLKDPKCKVCRNAP 202 (808)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (808)
.|..||..+++.+ ....|+.||.+-
T Consensus 3 ~C~~CGy~y~~~~-~~~~CP~Cg~~~ 27 (33)
T cd00350 3 VCPVCGYIYDGEE-APWVCPVCGAPK 27 (33)
T ss_pred ECCCCCCEECCCc-CCCcCcCCCCcH
Confidence 3566776665533 445788888643
No 202
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=31.14 E-value=4.5e+02 Score=24.69 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhh------HHHHHHHHHcCCCHHHH-------
Q 003601 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG------TATETKAMEDNCSPKEI------- 90 (808)
Q Consensus 24 ~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG------~~i~~~A~~~g~~p~e~------- 90 (808)
++|..+..+.++.+ ..... ..+.-++..+......++++|-.-++ ..+...+.+.|+++..+
T Consensus 3 IvVLG~~~~~~~~~--~~~~~---R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~ 77 (150)
T cd06259 3 IVVLGGGVNGDGPS--PILAE---RLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRST 77 (150)
T ss_pred EEEeCCccCCCCCC--hHHHH---HHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCC
Confidence 45666666777766 44333 34666666666667777788876543 34455666778766543
Q ss_pred -HHHHHHHHHHHHHhcCccccccCCCCChHHHHHHHHHHHHHHhC
Q 003601 91 -CDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDN 134 (808)
Q Consensus 91 -~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~ 134 (808)
+-.+....++.++..++ ....--|++.|......+|+++.-.
T Consensus 78 ~T~ena~~~~~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~~ 120 (150)
T cd06259 78 NTYENARFSAELLRERGI--RSVLLVTSAYHMPRALLIFRKAGLD 120 (150)
T ss_pred CHHHHHHHHHHHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCCC
Confidence 23445556667777776 4444457789999999999987643
No 203
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.97 E-value=45 Score=37.00 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=28.9
Q ss_pred EEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecC--cchhhHHH
Q 003601 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG--TDEYGTAT 76 (808)
Q Consensus 24 ~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G--~D~hG~~i 76 (808)
.+|.++.-=.-..+|+||+.. .+ ++.+++| .|++++-+.| |--.|+|-
T Consensus 64 ~~vYcGfDPTA~SLHvGNLl~-lm---~L~hfqr-~Gh~~ialIGgATa~vGDPS 113 (467)
T KOG2623|consen 64 QYVYCGFDPTAESLHVGNLLA-LM---VLIHFQR-AGHRPIALIGGATASVGDPS 113 (467)
T ss_pred ceEEecCCCcHHhhhhcchHH-HH---HHHHHHH-cCCCceEEeccccccccCCC
Confidence 344455422335799999984 33 4556554 6999887766 33345543
No 204
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.51 E-value=3.1e+02 Score=33.52 Aligned_cols=135 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCcee-----eceeeeeccCCCCcccccccccccCCCCCCCC-----CCcCCchhhccCCCCCcccc
Q 003601 121 TEACQAIFKKLLDNNWLI-----ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNY-----ESARGDQCENCGKLLNATDL 190 (808)
Q Consensus 121 ~~~v~~~f~~L~~~G~iy-----~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~-----~~~~g~~ce~cG~~l~~~el 190 (808)
......+-+.|.+...+. ++.....+|..|+...- ||+ |+. .....-.|..||......+
T Consensus 353 ~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~-------C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~~~- 422 (679)
T PRK05580 353 PPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE-------CPH--CDASLTLHRFQRRLRCHHCGYQEPIPK- 422 (679)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC-------CCC--CCCceeEECCCCeEECCCCcCCCCCCC-
Q ss_pred CCCccccCCCCcEEeeccceeEeccchHHHHHHHHHcC-CCCCCCC--------hhHHHHHHHHHHccCccceeccc-cC
Q 003601 191 KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNM-SVAGSWS--------QNAIQATHAWLKEGLKVRCITRD-LK 260 (808)
Q Consensus 191 ~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~-~~~~~~~--------~~~~~~~~~~l~~gl~d~~ISR~-~~ 260 (808)
.|+.||... +.....-.+++.+.+... +...... ....+.+.+.+.+|-.+.-|.-+ ..
T Consensus 423 ---~Cp~Cg~~~--------l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ia 491 (679)
T PRK05580 423 ---ACPECGSTD--------LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLA 491 (679)
T ss_pred ---CCCCCcCCe--------eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhc
Q ss_pred CCcccCCccCCCceEEEEecc
Q 003601 261 WGVPVPLERFKEKVFYVWFDA 281 (808)
Q Consensus 261 WGipvP~~~~~~~viyVWfDA 281 (808)
.|+.+| +-.+-+++||
T Consensus 492 kG~d~p-----~v~lV~il~a 507 (679)
T PRK05580 492 KGHDFP-----NVTLVGVLDA 507 (679)
T ss_pred cCCCCC-----CcCEEEEEcC
No 205
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=30.02 E-value=36 Score=25.28 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=5.3
Q ss_pred hhhccCCCCC
Q 003601 177 QCENCGKLLN 186 (808)
Q Consensus 177 ~ce~cG~~l~ 186 (808)
.|..||..++
T Consensus 21 vC~~CG~Vl~ 30 (43)
T PF08271_consen 21 VCPNCGLVLE 30 (43)
T ss_dssp EETTT-BBEE
T ss_pred ECCCCCCEee
Confidence 5666666554
No 206
>PRK03094 hypothetical protein; Provisional
Probab=29.68 E-value=45 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=28.1
Q ss_pred HHHHHHHCCCceeEec--------------CcchhhHHHHHHH------HHcCCCHHHHHHHHHHH
Q 003601 52 FARFCRLRGYNAIYIC--------------GTDEYGTATETKA------MEDNCSPKEICDKYHVI 97 (808)
Q Consensus 52 ~~R~~r~~G~~V~~v~--------------G~D~hG~~i~~~A------~~~g~~p~e~~~~~~~~ 97 (808)
+..+++.+||+|.-+. |-|..=.-|+..+ ...|+++.|+++....+
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~r 78 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESR 78 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHHh
Confidence 7889999999995443 2222111222222 23589999998877544
No 207
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.06 E-value=88 Score=36.67 Aligned_cols=51 Identities=22% Similarity=0.554 Sum_probs=32.6
Q ss_pred eceeeeeccCCCCcccccccccccCCCCCCCCCC-----cCCchhhccCCCCCccccCCCccccCCCCc
Q 003601 139 ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYES-----ARGDQCENCGKLLNATDLKDPKCKVCRNAP 202 (808)
Q Consensus 139 ~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~-----~~g~~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (808)
++..+..+|.+|+... .||. |+..- ...-.|..||..... ...|+.||..-
T Consensus 208 rGya~~~~C~~Cg~~~-------~C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~----~~~Cp~C~s~~ 263 (505)
T TIGR00595 208 RGYSKNLLCRSCGYIL-------CCPN--CDVSLTYHKKEGKLRCHYCGYQEPI----PKTCPQCGSED 263 (505)
T ss_pred CcCCCeeEhhhCcCcc-------CCCC--CCCceEEecCCCeEEcCCCcCcCCC----CCCCCCCCCCe
Confidence 3445566899987653 5888 86422 123469999975432 34799998743
No 208
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.09 E-value=36 Score=22.17 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=8.1
Q ss_pred ccCCCCCccc-cCCCccccCC
Q 003601 180 NCGKLLNATD-LKDPKCKVCR 199 (808)
Q Consensus 180 ~cG~~l~~~e-l~~p~c~~~g 199 (808)
.||..+.+.+ -....|+-||
T Consensus 3 sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 3 SCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred cCCCcccCcccCceEeCCCCC
Confidence 3444444443 2223344444
No 209
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=26.71 E-value=54 Score=39.97 Aligned_cols=50 Identities=20% Similarity=0.546 Sum_probs=0.0
Q ss_pred eceeeeeccCCCCcccccccccccCCCCCCCC-----CCcCCchhhccCCCCCccccCCCccccCCCC
Q 003601 139 ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNY-----ESARGDQCENCGKLLNATDLKDPKCKVCRNA 201 (808)
Q Consensus 139 ~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~-----~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~ 201 (808)
++..+...|..|+...- ||+ |.. .....-.|..||+.-.... .|+.||.+
T Consensus 430 RGys~~l~C~~Cg~v~~-------Cp~--Cd~~lt~H~~~~~L~CH~Cg~~~~~p~----~Cp~Cgs~ 484 (730)
T COG1198 430 RGYAPLLLCRDCGYIAE-------CPN--CDSPLTLHKATGQLRCHYCGYQEPIPQ----SCPECGSE 484 (730)
T ss_pred CCccceeecccCCCccc-------CCC--CCcceEEecCCCeeEeCCCCCCCCCCC----CCCCCCCC
No 210
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=26.67 E-value=40 Score=33.45 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=17.3
Q ss_pred hCCceeeceeeeeccCCCCcccc
Q 003601 133 DNNWLIENTMQQPYCDTCKRFLA 155 (808)
Q Consensus 133 ~~G~iy~~~~~~~y~~~~~~~l~ 155 (808)
+++-.+.+....|||..|+-.+.
T Consensus 3 kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 3 KKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred cccceeecccceeehhhCCCccc
Confidence 45667778888899998876655
No 211
>PRK12496 hypothetical protein; Provisional
Probab=26.37 E-value=33 Score=33.76 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=0.0
Q ss_pred hhhccCCCCCccccCCCccccCCCCcEEeeccc
Q 003601 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNH 209 (808)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~ 209 (808)
.|..||+.++...-.+ .|+.||+++..+....
T Consensus 129 ~C~gC~~~~~~~~~~~-~C~~CG~~~~r~~~~~ 160 (164)
T PRK12496 129 VCKGCKKKYPEDYPDD-VCEICGSPVKRKMVKR 160 (164)
T ss_pred ECCCCCccccCCCCCC-cCCCCCChhhhcchhh
No 212
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.02 E-value=57 Score=30.12 Aligned_cols=24 Identities=21% Similarity=0.757 Sum_probs=9.9
Q ss_pred hhccCCCCCccccCCCccccCCCC
Q 003601 178 CENCGKLLNATDLKDPKCKVCRNA 201 (808)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~ 201 (808)
|..||......+....+|+.||.+
T Consensus 74 C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 74 CKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred hhhCCCccccCCccCCcCcCCCCC
Confidence 334443333333223345555543
No 213
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=25.82 E-value=66 Score=29.84 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=21.6
Q ss_pred chHhhhhhhHHHHHHHHHHHCCCceeEecCcc
Q 003601 39 LGNIIGSVLSADVFARFCRLRGYNAIYICGTD 70 (808)
Q Consensus 39 iGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D 70 (808)
-||++ +++ .++|.++.+||+|.+.+.-+
T Consensus 9 ~Ghv~-P~l---ala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 9 RGHVY-PFL---ALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp HHHHH-HHH---HHHHHHHHTT-EEEEEETGG
T ss_pred hhHHH-HHH---HHHHHHhccCCeEEEeeccc
Confidence 59987 555 79999999999999776533
No 214
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.64 E-value=58 Score=31.70 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCc
Q 003601 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYN 62 (808)
Q Consensus 29 ~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~ 62 (808)
.+.||||+.=.+. + ++.|++.|.+|..|++
T Consensus 21 ~~~YP~GDvp~~~--G--VCTDVViRA~R~~g~D 50 (164)
T PF06940_consen 21 SIGYPNGDVPDNT--G--VCTDVVIRAYRDAGYD 50 (164)
T ss_pred ecCCCCCCCCCCC--C--ccHHHHHHHHHHcCCC
Confidence 5689999987774 3 4689999999988875
No 215
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.92 E-value=2.2e+02 Score=26.96 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHhCCceeec-------eeeeeccCCCCccc
Q 003601 117 TPQQTEACQAIFKKLLDNNWLIEN-------TMQQPYCDTCKRFL 154 (808)
Q Consensus 117 ~~~~~~~v~~~f~~L~~~G~iy~~-------~~~~~y~~~~~~~l 154 (808)
+..+.+..+..|..+. +|-+..+ .-..|+|..|+...
T Consensus 37 s~V~pe~L~fafe~l~-~gt~~ega~L~i~~~p~~~~C~~CG~~~ 80 (135)
T PRK03824 37 QDVDKEIVEFALNELL-KGTILEGAEIIFEEEEAVLKCRNCGNEW 80 (135)
T ss_pred hhhhHHHHHHHHHHHH-cCCcccCCEEEEEecceEEECCCCCCEE
Confidence 3456667777777654 5555544 33567888876443
No 216
>PLN02886 aminoacyl-tRNA ligase
Probab=24.90 E-value=38 Score=38.07 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=17.9
Q ss_pred ccCcEEEEe--eee-ec-CC-CccccccC---CccChhh
Q 003601 336 TLMKTISVT--EYL-NY-ES-GKFSKSKG---IGVFGND 366 (808)
Q Consensus 336 ~~p~~i~~h--g~l-~~-~G-~KMSKS~G---N~I~~~d 366 (808)
+.|..++.. ..+ .+ +| .|||||.. |.|...|
T Consensus 229 ~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~D 267 (389)
T PLN02886 229 KVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLD 267 (389)
T ss_pred cCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecC
Confidence 355555421 223 34 44 69999995 5776644
No 217
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=24.71 E-value=41 Score=25.76 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=13.2
Q ss_pred hhhccCCCCCccccC---CCccccCCC
Q 003601 177 QCENCGKLLNATDLK---DPKCKVCRN 200 (808)
Q Consensus 177 ~ce~cG~~l~~~el~---~p~c~~~g~ 200 (808)
+|..||.++.+.+.. ...|..||.
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~ 28 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGY 28 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCC
Confidence 455666666554432 245777764
No 218
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.19 E-value=34 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=15.1
Q ss_pred ccccCCCCcEEeeccceeEecc
Q 003601 194 KCKVCRNAPQIRDTNHLFLDLP 215 (808)
Q Consensus 194 ~c~~~g~~~~~~~~~~~f~~l~ 215 (808)
.|..||..+++++.+. ++|.
T Consensus 24 ~Cp~CGaeleVv~~~p--~~L~ 43 (54)
T TIGR01206 24 ICDECGAELEVVSLDP--LRLE 43 (54)
T ss_pred eCCCCCCEEEEEeCCC--CEEE
Confidence 5888999998887777 4443
No 219
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=23.96 E-value=38 Score=33.05 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=24.8
Q ss_pred CchhhccCCCCCcccc--CCCccccCCCCcEEeeccceeEeccchHHHHHHHH
Q 003601 175 GDQCENCGKLLNATDL--KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYI 225 (808)
Q Consensus 175 g~~ce~cG~~l~~~el--~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~ 225 (808)
+-.|+.|+.-++-.|. .+-.|+.||.+++. ++-+...+.|.+-+
T Consensus 109 ~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~-------~dn~~~i~~l~~~i 154 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAMELNFTCPRCGAMLDY-------LDNSEAIEKLEEQI 154 (158)
T ss_pred eEECCCCCcEeeHHHHHHcCCcCCCCCCEeee-------ccCHHHHHHHHHHH
Confidence 3456666665543332 24678889888763 34444555554444
No 220
>PRK05978 hypothetical protein; Provisional
Probab=23.85 E-value=53 Score=31.71 Aligned_cols=9 Identities=44% Similarity=1.213 Sum_probs=6.8
Q ss_pred cccCCCCCCCC
Q 003601 160 EGTCPFEGCNY 170 (808)
Q Consensus 160 ~g~cp~~~c~~ 170 (808)
.++||. ||.
T Consensus 33 ~grCP~--CG~ 41 (148)
T PRK05978 33 RGRCPA--CGE 41 (148)
T ss_pred cCcCCC--CCC
Confidence 468888 875
No 221
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=23.76 E-value=23 Score=35.74 Aligned_cols=79 Identities=14% Similarity=0.407 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhCCceeeceeeeeccCCC----Ccccccccc--cccCCCCCCCCCCcCCchhhccCCCCCcccc--
Q 003601 119 QQTEACQAIFKKLLDNNWLIENTMQQPYCDTC----KRFLADRLV--EGTCPFEGCNYESARGDQCENCGKLLNATDL-- 190 (808)
Q Consensus 119 ~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~----~~~l~d~~v--~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el-- 190 (808)
--...++++.+++.+.|+.++.++.-...+++ +.||+..+- -.+|-. |..---.|..|..||--+.-..+
T Consensus 134 L~ks~iE~lLqkf~q~gwf~e~eg~ftl~~ralaELe~YL~s~y~dnlk~Cn~--Ch~LvIqg~rCg~c~i~~h~~c~qt 211 (235)
T KOG4718|consen 134 LKKSRIEELLQKFIQMGWFMEVEGRFTLGPRALAELEFYLSSNYADNLKNCNL--CHCLVIQGIRCGSCNIQYHRGCIQT 211 (235)
T ss_pred CCHHHHHHHHHHHHHhchhheecceEEEchHHHHHHHHHHHhhhHHHHHHHhH--hHHHhheeeccCcccchhhhHHHHH
Confidence 34567899999999999999988776666654 334443331 124433 43322346667777754332211
Q ss_pred ---CCCccccCC
Q 003601 191 ---KDPKCKVCR 199 (808)
Q Consensus 191 ---~~p~c~~~g 199 (808)
..+.||.||
T Consensus 212 y~q~~~~cphc~ 223 (235)
T KOG4718|consen 212 YLQRRDICPHCG 223 (235)
T ss_pred HhcccCcCCchh
Confidence 146777776
No 222
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=23.70 E-value=2.6e+02 Score=26.50 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=45.7
Q ss_pred CcEEEEeCCCCCCCcCcchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003601 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (808)
Q Consensus 22 ~~~~vt~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (808)
+++.+.++. |..| -.+ ..++++++|..||+|.++ |.+--=..+...|.+.+.
T Consensus 4 ~~vl~~~~~----gD~H---~lG----~~iv~~~lr~~G~eVi~L-G~~vp~e~i~~~a~~~~~---------------- 55 (137)
T PRK02261 4 KTVVLGVIG----ADCH---AVG----NKILDRALTEAGFEVINL-GVMTSQEEFIDAAIETDA---------------- 55 (137)
T ss_pred CEEEEEeCC----CChh---HHH----HHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCC----------------
Confidence 445554443 5654 444 467889999999999986 444333333333333221
Q ss_pred HHhcCccccccCCCCChHHHHHHHHHHHHHHhCCc
Q 003601 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNW 136 (808)
Q Consensus 102 ~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~ 136 (808)
+-+++| .....+...++++...|.++|.
T Consensus 56 -d~V~lS------~~~~~~~~~~~~~~~~L~~~~~ 83 (137)
T PRK02261 56 -DAILVS------SLYGHGEIDCRGLREKCIEAGL 83 (137)
T ss_pred -CEEEEc------CccccCHHHHHHHHHHHHhcCC
Confidence 122222 2223566777888888888765
No 223
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=23.54 E-value=50 Score=35.36 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=29.9
Q ss_pred EEEE-eeccccchhcHHHHHhhhCCCCcccCcEEEEeeee-ecCCCccccccCCc
Q 003601 309 YQFM-GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIG 361 (808)
Q Consensus 309 vh~~-GkDii~fH~i~~pa~l~a~g~~~~~p~~i~~hg~l-~~~G~KMSKS~GN~ 361 (808)
.|++ |.|++.- +-....+..++|. ..| .+.+++.+ +.+|.|+||+.|-.
T Consensus 187 ThViRG~D~l~~-t~~q~~l~~aLg~--~~P-~y~H~pll~~~~g~kLSKR~~~~ 237 (272)
T TIGR03838 187 THVVRGADLLDS-TPRQIYLQRLLGL--PPP-RYLHLPLVVNADGEKLSKQNGAP 237 (272)
T ss_pred CEEEeCHhhhhc-cHHHHHHHHHhCC--CCC-eEEechhhhCCCCCeeeccCCcc
Confidence 3544 7776521 1111234456665 456 57777776 58999999998753
No 224
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.51 E-value=3.2e+02 Score=25.04 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCccccc-cCCCCChHHHHHHH
Q 003601 47 LSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDN-FGRTSTPQQTEACQ 125 (808)
Q Consensus 47 l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~-f~rT~~~~~~~~v~ 125 (808)
+..+++++++|..|++|.++-..... ..+...|.+. .+|. .+..++..|...+.
T Consensus 14 lG~~~~~~~l~~~G~~vi~lG~~vp~-e~~~~~a~~~------------------------~~d~V~iS~~~~~~~~~~~ 68 (122)
T cd02071 14 RGAKVIARALRDAGFEVIYTGLRQTP-EEIVEAAIQE------------------------DVDVIGLSSLSGGHMTLFP 68 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCH-HHHHHHHHHc------------------------CCCEEEEcccchhhHHHHH
Confidence 34678999999999999997543222 1223333322 1221 12233456777778
Q ss_pred HHHHHHHhCCc
Q 003601 126 AIFKKLLDNNW 136 (808)
Q Consensus 126 ~~f~~L~~~G~ 136 (808)
++...|.++|.
T Consensus 69 ~~~~~L~~~~~ 79 (122)
T cd02071 69 EVIELLRELGA 79 (122)
T ss_pred HHHHHHHhcCC
Confidence 88888887755
No 225
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.35 E-value=46 Score=23.49 Aligned_cols=24 Identities=25% Similarity=0.755 Sum_probs=12.8
Q ss_pred hhccCCCCCccccCCCccccCCCCc
Q 003601 178 CENCGKLLNATDLKDPKCKVCRNAP 202 (808)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~ 202 (808)
|..||...+..+. -..|+.||.+.
T Consensus 5 C~~CG~i~~g~~~-p~~CP~Cg~~~ 28 (34)
T cd00729 5 CPVCGYIHEGEEA-PEKCPICGAPK 28 (34)
T ss_pred CCCCCCEeECCcC-CCcCcCCCCch
Confidence 5556655443221 12688888654
No 226
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=23.25 E-value=82 Score=37.39 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=3.8
Q ss_pred ccccCCC
Q 003601 194 KCKVCRN 200 (808)
Q Consensus 194 ~c~~~g~ 200 (808)
.|+.||+
T Consensus 534 ~CP~CGs 540 (555)
T cd01675 534 KCPKCGS 540 (555)
T ss_pred CCcCCCC
Confidence 4555553
No 227
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=23.08 E-value=51 Score=32.64 Aligned_cols=29 Identities=14% Similarity=0.504 Sum_probs=17.3
Q ss_pred CchhhccCCCCCccccCCCccccCCCCcEEee
Q 003601 175 GDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (808)
Q Consensus 175 g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~ 206 (808)
...|..|++.+. ...-.|++||+++..+.
T Consensus 139 ~~rC~GC~~~f~---~~~~~Cp~CG~~~~~~~ 167 (177)
T COG1439 139 RLRCHGCKRIFP---EPKDFCPICGSPLKRKR 167 (177)
T ss_pred eEEEecCceecC---CCCCcCCCCCCceEEee
Confidence 345667777665 12235888888765443
No 228
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=22.18 E-value=70 Score=30.61 Aligned_cols=36 Identities=6% Similarity=-0.018 Sum_probs=20.4
Q ss_pred CCcCcchHhhhhhhHHHHHHHHHHH---CCCceeEecCcchh
Q 003601 34 NNVPHLGNIIGSVLSADVFARFCRL---RGYNAIYICGTDEY 72 (808)
Q Consensus 34 ng~lHiGHa~~~~l~aDv~~R~~r~---~G~~V~~v~G~D~h 72 (808)
-|++||||++. +. -.+..-++. .+..|.+-++.|.+
T Consensus 41 FGPlnL~~lyr-fc--~~l~~~L~~~~~~~k~iv~yts~d~~ 79 (141)
T PF14671_consen 41 FGPLNLAQLYR-FC--CKLNKKLKSPELKKKKIVHYTSSDPK 79 (141)
T ss_dssp -----HHHHHH-HH--HHHHHHHH-GGGTTSEEEEEE-S-HH
T ss_pred CCCccHHHHHH-HH--HHHHHHHcCHHhcCCeEEEECCCChh
Confidence 49999999996 32 345555554 79999999998874
No 229
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=21.99 E-value=56 Score=33.81 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCceeeceeeeeccCCCCcccccccccccCCCCCCCCCCcCCchhhccCCCCCccccCCCccccCCCC
Q 003601 122 EACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201 (808)
Q Consensus 122 ~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~ 201 (808)
+.....-.++..++-+-+....+.=|..|++.+.-.++.+.||. |++-.----.|-.||+.+...-| ...|..||..
T Consensus 116 ktl~~m~ek~~~ql~La~~iRavd~~dva~~v~~~hfLpd~~gn--~r~f~rq~~rc~~c~~k~rr~pl-~g~c~kcg~~ 192 (253)
T COG1933 116 KQLGDMEEKVKRQLDLARRIRAVDEHDVAERVLNSHFIPDLRGN--LRSFTRQEFRCVKCNTKFRRPPL-DGKCPICGGK 192 (253)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHhHHHHHHhhccCCCcchhhh--hhhhhhheeehHhhhhhhcCCCc-cccccccCCe
Confidence 34455555666677777777788889999999888899889888 76533333458888887765443 3579999986
Q ss_pred cE
Q 003601 202 PQ 203 (808)
Q Consensus 202 ~~ 203 (808)
+.
T Consensus 193 ~~ 194 (253)
T COG1933 193 IV 194 (253)
T ss_pred EE
Confidence 54
No 230
>PRK00420 hypothetical protein; Validated
Probab=20.17 E-value=59 Score=29.81 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=4.8
Q ss_pred ccccCCCCcE
Q 003601 194 KCKVCRNAPQ 203 (808)
Q Consensus 194 ~c~~~g~~~~ 203 (808)
+|+.||..+.
T Consensus 42 ~Cp~Cg~~~~ 51 (112)
T PRK00420 42 VCPVHGKVYI 51 (112)
T ss_pred ECCCCCCeee
Confidence 4555555443
Done!