Query 003601
Match_columns 808
No_of_seqs 423 out of 3501
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 17:33:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003601.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1652-1655//hhsearch_pdb/003601hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rqg_A Methionyl-tRNA syntheta 1.0 1 1 1231.4 53.4 697 21-749 1-722 (722)
2 3h99_A Methionyl-tRNA syntheta 1.0 1 1 927.4 41.4 541 11-588 7-557 (560)
3 3u1f_A Methionyl-tRNA syntheta 1.0 1 1 914.3 38.6 518 19-584 6-540 (542)
4 3kfl_A Methionyl-tRNA syntheta 1.0 1 1 897.6 39.5 521 19-589 23-561 (564)
5 4dlp_A Aminoacyl-tRNA syntheta 1.0 1 1 847.2 41.0 509 20-584 23-535 (536)
6 2x1l_A Methionyl-tRNA syntheta 1.0 1 1 800.2 38.5 505 19-581 9-524 (524)
7 2d5b_A Methionyl-tRNA syntheta 1.0 1 1 780.3 35.6 493 21-578 2-500 (500)
8 2csx_A Methionyl-tRNA syntheta 1.0 1 1 776.1 32.1 490 21-580 4-497 (497)
9 1ile_A Ilers, isoleucyl-tRNA s 1.0 1 1 732.3 28.3 496 19-538 35-772 (821)
10 1gax_A Valrs, valyl-tRNA synth 1.0 1 1 718.2 37.6 497 9-537 20-696 (862)
No 1
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=1.00 E-value=1 Score=1231.41 Aligned_cols=697 Identities=37% Similarity=0.695 Sum_probs=601.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99299990799999947451763353599999999998899246846952464899999998199999999999999999
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
+++||||+|+|||||.|||||++++++.+|+++||+||+|++|+|++|||+||+||+.+|+++|++|+++++++++.|++
T Consensus 1 m~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCHHHCHHHCCHHHHHHHHHHHHHCCCCEEECCEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98789953898899840003021118999999999996699657136037887899999998599999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99764732455577897679999999999898579666410553004887952345401354789877777867730000
Q 003601 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (808)
Q Consensus 101 ~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cP~~~Cg~~~~~gd~ce~ 180 (808)
+|++|||++|.|+||+++.|.+.+|++|.+|+++|+||++.++++||++|++||+|+||+|+||. ||.+++||++|+.
T Consensus 81 ~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~--c~~~~~~Gd~c~~ 158 (722)
T 1rqg_A 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEV 158 (722)
T ss_dssp HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSS--SCCSCCCTTTCSS
T ss_pred HHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCHHHCCCCCCC--CCCCCCCCCHHHH
T ss_conf 99980997899726888889999999999999789789411666021888968543430332676--6775678635541
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf 27877765567985666899718933066447160039999999980877999885699999999870576400001368
Q 003601 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260 (808)
Q Consensus 181 cG~~l~~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~ 260 (808)
||+.+++.+|++|+|++||++++.+.++||||+|++|+++|++|+++++ |+++.++++.+||++||+||||||+++
T Consensus 159 ~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~----wp~~~~~~~~~wl~~gl~dw~ISR~~~ 234 (722)
T 1rqg_A 159 CGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP----WKPNVKNMVLSWIEEGLEERAITRDLN 234 (722)
T ss_dssp SCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC----CCHHHHHHHHHHHTTCCCCEECEECCS
T ss_pred CCCCCCHHHCCCCCCCCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 3662685550388646879676999815289985999999999998589----998999999999977986553241356
Q ss_pred CCCCCCCC--CCCCCEEEEEECCCCHHHHHCCCCC------HHHHHHCCC-CCCCCEEEEEEECCCCCHHCHHHHHHHHC
Q ss_conf 98424976--6789669999615521344203893------467641289-99851599996136530140799973207
Q 003601 261 WGVPVPLE--RFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKN-PENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (808)
Q Consensus 261 WGipvP~~--~~~~~viyVWfDA~~~Yis~~~~~~------~~~~~~W~~-p~d~~~i~~iGkDii~fH~v~wpa~l~a~ 331 (808)
||+|+|.+ +.+++++||||||+++|++.+..|. ++|+.||+. +.++..+|++||||++||+++|||||+++
T Consensus 235 WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~ 314 (722)
T 1rqg_A 235 WGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAY 314 (722)
T ss_dssp SSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 86055862468999889997324211134477877640980188763488899971688736654543032428999605
Q ss_pred CC--------CCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99--------8456827997201544897433346874482344212999525899987149987785447999999877
Q 003601 332 GE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (808)
Q Consensus 332 g~--------~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n 403 (808)
+. +|++|+++++||||+.+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++||++.|..++|
T Consensus 315 ~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n 393 (722)
T 1rqg_A 315 GKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKVRIN 393 (722)
T ss_dssp CCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 8874433246988888899850699488364000897687999998-649469999998449988888358899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996709999999986789898687599999999999999999999983029999999999999977
Q 003601 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (808)
Q Consensus 404 ~~L~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N 483 (808)
++|+++++|+++|+..|+.+ ++++.+|... ...+.|+++++.+..+..++.++|++++|+.|++.+++|++.+|
T Consensus 394 ~~l~~~l~N~~~R~~~~~~k----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n 467 (722)
T 1rqg_A 394 EELVNNLGNFVHRALTFVNR----YFDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGN 467 (722)
T ss_dssp HTTTTTHHHHHHHHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998----5378888865--57888999999999999999999983579999999999999999
Q ss_pred HHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99873100100269967799999999999999998401600289999999809997555544554576432368776789
Q 003601 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (808)
Q Consensus 484 ~y~~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~ 563 (808)
+|++..+||.+.+++.+++.+++++++++++.+++||+||||++|++||++||.+.. ..|.+ ..++
T Consensus 468 ~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~--~~w~~------------~~~~ 533 (722)
T 1rqg_A 468 RYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV--KRWEF------------RELP 533 (722)
T ss_dssp HHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC--CCSSC------------CCCC
T ss_pred HHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC--CCCHH------------CCCC
T ss_conf 999854725323789999999999999999999998612254789999997499754--67111------------0689
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH-HHHHH-HH--H-HHHHCCCCCCCCC--CCCCCCCCCCCCC
Q ss_conf 998118998876687826899999661187136999999-99988-89--9-7531024467998--6544322223668
Q 003601 564 AGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE-AEAAK-TA--E-QLKKTKISVDGGG--KKQKSAKSTAGAK 636 (808)
Q Consensus 564 ~g~~i~~~~~LF~ri~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-~~--~-~~~~~~~~~~~~~--~~~~~~~~~~~~~ 636 (808)
.||+|+++++||+||+.++++++.+++.++..++.++.. .+... .+ + ..+... . +... ..+...+...+++
T Consensus 534 ~g~~~~~~~~lf~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 611 (722)
T 1rqg_A 534 AGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKREDVIRVAKEKFG-D-EAEVVLRRVYKDIKLKEKK 611 (722)
T ss_dssp TTCBCCCCCCSCCCCCHHHHHHHHHHTTTTTCHHHHHHHHHHHSCHHHHHHHHHHHHG-G-GTHHHHHHHSSCCC-----
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCC-C-CCCCCCCCCCCCCCCCCCC
T ss_conf 9888199998868879789999985312322111110023333200001000024544-4-4331222223444432112
Q ss_pred CCCCCCCCC-CCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEECCCCCCCHHHCCCCEEEEEEECCCCEECC
Q ss_conf 888788766-7215547999999988489999508999981798228999489878870111899779742003410036
Q 003601 637 SKTTAEPEI-SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRG 715 (808)
Q Consensus 637 ~~~~~~~~~-~~~~~~lrvg~I~~~~~hp~adkl~~~~vd~G~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~k~~G 715 (808)
.....++.+ ||+|+|||||+|++|++||+||||++|+||+|+ ++||||||++++|.|++|+|++|++++||||+||||
T Consensus 612 ~~~~~~i~~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~g 690 (722)
T 1rqg_A 612 EGKEMYVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRG 690 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCEEEEEECCC-CEEEEEECCCCCCCHHHCCCCEEECEEEECCEEECC
T ss_conf 3656501476751046699999998757998753699997089-148999798655787780799786706870310478
Q ss_pred CCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEE
Q ss_conf 2000178411239998289984999999985364
Q 003601 716 IKSHAMVLCASTSDNTKVELVEPPKSAKIGERVA 749 (808)
Q Consensus 716 ~~S~gMll~~~~~~~~~~~~l~~~~~~~~G~~v~ 749 (808)
++|+|||||++++ +++.+|.|+.++++|++|.
T Consensus 691 ~~S~gM~~~~~~~--~~i~~l~~~~~~~~G~~~~ 722 (722)
T 1rqg_A 691 IGSQGMLLAADDG--ERVALLMPDKEVKLGAKVR 722 (722)
T ss_dssp ----------------------------------
T ss_pred CCCCEEEEEEECC--CCEEEECCCCCCCCCCCCC
T ss_conf 2447699972079--9189947899999989897
No 2
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=1.00 E-value=1 Score=927.38 Aligned_cols=541 Identities=26% Similarity=0.498 Sum_probs=496.9
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999999929999079999994745176335359999999999889924684695246489999999819999999
Q 003601 11 APPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90 (808)
Q Consensus 11 ~~~~~~~~~g~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~ 90 (808)
++....+..|+++||||+|+|||||++||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++
T Consensus 7 ~~~~~~~~~~~~~~~v~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~ 85 (560)
T 3h99_A 7 HHHHGSMTQVAKKILVTCASPYANGSIHLGHMLE-HIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQM 85 (560)
T ss_dssp ----------CCEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCHHHH
T ss_conf 8877888899984899689998999846546799-999999999999709817874214676809999999819899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999976473245557789767999999999989857966641055300488795234540135478987777
Q 003601 91 CDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNY 170 (808)
Q Consensus 91 ~~~~~~~~~~~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cP~~~Cg~ 170 (808)
++++.+.|+++|++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|++||+|++|+|+||. |++
T Consensus 86 ~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~ 163 (560)
T 3h99_A 86 IGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPK--CKS 163 (560)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTT--TCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEECCHHCCCCCCC--CCC
T ss_conf 999999999999983999888432798789999999999999889989752468644765765042212787888--888
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 78677300002787776556798566689971893306644716003999999998087799988569999999987057
Q 003601 171 ESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGL 250 (808)
Q Consensus 171 ~~~~gd~ce~cG~~l~~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl 250 (808)
.+++||+||.||+.+++.++++|+|++||++++.+.++||||+|++++++|.+++++. .|+++.++.+.+|+++++
T Consensus 164 ~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~~l 239 (560)
T 3h99_A 164 PDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG----ALQEQVANKMQEWFESGL 239 (560)
T ss_dssp SSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS----CSCHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHCCC
T ss_conf 5455631022045578465027755557888658743628988799799999999818----989899999999985699
Q ss_pred CCCEECCCC-CCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCC------HHHHHHCCCCCCCCEEEEEEECCCCCHHCH
Q ss_conf 640000136-8984249766789669999615521344203893------467641289998515999961365301407
Q 003601 251 KVRCITRDL-KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (808)
Q Consensus 251 ~d~~ISR~~-~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~------~~~~~~W~~p~d~~~i~~iGkDii~fH~v~ 323 (808)
+||||||+. .||+|+|.+ +++|+||||||+++|++.+.+|+ .+|+.||+...+++++|++|+||++||+++
T Consensus 240 ~D~~IsR~~~~WG~~iP~~--~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~ 317 (560)
T 3h99_A 240 QQWDISRDAPYFGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLF 317 (560)
T ss_dssp CCEECEEESSCSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTH
T ss_pred CCCCCCCCCCCCCEECCCC--CCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf 8877556688678567998--99658968565041999998876514872148872767788526888504424028999
Q ss_pred HHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCC-CCCCCCHHHHHHHH
Q ss_conf 99973207998456827997201544897433346874482344212999525899987149987-78544799999987
Q 003601 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKS 402 (808)
Q Consensus 324 wpa~l~a~g~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~-~D~dFs~~~~~~~~ 402 (808)
|||+|+++|. ++|+.+++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.++.+ +|++|+++.+..++
T Consensus 318 ~~a~l~~~g~--~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~-~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~ 394 (560)
T 3h99_A 318 WPAMLEGSNF--RKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRV 394 (560)
T ss_dssp HHHHHHHTTB--CCCSEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHH
T ss_pred HHHHHHHCCC--CCCCEEEEEEEEEECCEECCCCCCCCCCHHHHHH-HCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 9999996799--9986899876798578020460898688999998-768189999999748998778876999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999670999999998678989868759999999999999999999998302999999999999997
Q 003601 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEG 482 (808)
Q Consensus 403 n~~L~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~ 482 (808)
|++|++++||+++|+++++.+ ++++.+|.. ..|+++++.+..+++.+.++|++++|+.|++.+++|++.+
T Consensus 395 ~~~l~~~l~n~~~R~~~~~~~----~~~~~~~~~------~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~ 464 (560)
T 3h99_A 395 NADIVNKVVNLASRNAGFINK----RFDGVLASE------LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLA 464 (560)
T ss_dssp HHHCCCCCTHHHHTTHHHHHH----HSTTBCCSS------CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999999988----538988986------1359999999999999999997558999999999999999
Q ss_pred HHHHHHHCCHHHCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 799873100100269--967799999999999999998401600289999999809997555544554576432368776
Q 003601 483 NAYLQESQFWKLYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWE 560 (808)
Q Consensus 483 N~y~~~~~pW~l~k~--~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 560 (808)
|+|++..+||.+.++ +.+++.++++++.++++.+++||+||||++|++||++||++ ..|.+. ..
T Consensus 465 n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~----~~w~~~----------~~ 530 (560)
T 3h99_A 465 NRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE----LTWDGI----------QQ 530 (560)
T ss_dssp HHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC----CCTGGG----------GS
T ss_pred HHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC----CCHHHH----------HC
T ss_conf 9999826856551786769999999999999999999998231427999999980899----772565----------16
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7899981189988766878268999996
Q 003601 561 IIPAGHKIGSPNPLFKELKDDEVEFFRS 588 (808)
Q Consensus 561 ~l~~g~~i~~~~~LF~ri~~~~i~~~~~ 588 (808)
.+ .|++++++++||+||+.++++++.+
T Consensus 531 ~~-~~~~i~~~~~lf~ri~~~~~~~~~~ 557 (560)
T 3h99_A 531 PL-LGHKVNPFKALYNRIDMRQVEALVE 557 (560)
T ss_dssp CC-CSCBCCCCSCSCCCCCHHHHHHHHH
T ss_pred CC-CCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 67-9888799885888899799999986
No 3
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=1.00 E-value=1 Score=914.31 Aligned_cols=518 Identities=21% Similarity=0.344 Sum_probs=465.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99992999907999999474517633535999999999988992468469524648999999981999999999999999
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (808)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~~~~~~~~~ 98 (808)
...++||||||+|||||.|||||+++ ++.+|+++||+||+|++|+|++||||||+||+.+|+++|++|+++|++|++.|
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~-~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYS-TLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 88998898389988898545677899-99999999999941997404483273769999999984999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99997647324555778976799999999998985796664105530048879523454013547898777778677300
Q 003601 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (808)
Q Consensus 99 ~~~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cP~~~Cg~~~~~gd~c 178 (808)
+++|++|||++|.|+||+++.|.+.|+++|.+|+++|+||++.++++||++|++||+|++|++.|+. +|++|
T Consensus 85 ~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~--------~g~~~ 156 (542)
T 3u1f_A 85 KKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDK--------DGNPC 156 (542)
T ss_dssp HHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCEE
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCHHHHHHCCCCC--------CCCCC
T ss_conf 9999993994675864798899999999999996569679601148860467630012342011134--------67654
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf 00278777655679856668997189330664471600399999999808779998856999999998705764000013
Q 003601 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (808)
Q Consensus 179 e~cG~~l~~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (808)
. +|++||++++.+.++||||+++++++++.+|+++.+.. .++....+...+|+.++++||||||+
T Consensus 157 ~--------------~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~~~~~~~l~Dw~ISRq 221 (542)
T 3u1f_A 157 K--------------VSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGC-IVPEFRRREVIRAVEKGLPDLSVSRA 221 (542)
T ss_dssp E--------------EETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEEE
T ss_pred C--------------CCCCCCCCCEEECCCCCEECCHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5--------------55789980024315421001215789998777504666-68724567675545405644674555
Q ss_pred CC----CCCCCCCCCCCCCEEEEEECCCCHHHHHCCCC----------CHHHHHHCCCCCCCCEEEEEEECCCCCHHCHH
Q ss_conf 68----98424976678966999961552134420389----------34676412899985159999613653014079
Q 003601 259 LK----WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY----------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (808)
Q Consensus 259 ~~----WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~----------~~~~~~~W~~p~d~~~i~~iGkDii~fH~v~w 324 (808)
+. ||||+|.+ +++++||||||+++|++++..+ .++|..+|..|.| +|++|+||++||+++|
T Consensus 222 ~~~~~~WGipiP~~--~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d---~~~~G~D~~~fh~~~~ 296 (542)
T 3u1f_A 222 RATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD---VHVIGKDILKFHAIYW 296 (542)
T ss_dssp GGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS---EEEEEGGGHHHHHTHH
T ss_pred CCCCCCCCCCCCCC--CCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCE---EEEECCCCCCCCCCHH
T ss_conf 56767789865888--672025652031011124431533458864454205666079521---8872300563353114
Q ss_pred HHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99732079984568279972015448974333468744823442129995258999871499877854479999998779
Q 003601 325 PSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (808)
Q Consensus 325 pa~l~a~g~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n~ 404 (808)
||++++.|. ++|+.+++||||+.+|+|||||+||+|+|.++++ .||+|+|||||++.+++++|++||++.+..++|+
T Consensus 297 ~a~l~~~g~--~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~-~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~ 373 (542)
T 3u1f_A 297 PAFLLSAGL--PLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAE-EFGYDALKYFLLRESGFSDDGDYSDKNMIARLNG 373 (542)
T ss_dssp HHHHHHHTC--CCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHH-HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHH
T ss_pred HHHHHHHCC--CCCCEECCCCCEECCCCEECCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 899876313--5652010364161488350304688788567876-0693088999985286334654668887887655
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999967099999999867898986875999999999999999999999830299999999999999779
Q 003601 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484 (808)
Q Consensus 405 ~L~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~ 484 (808)
+|+|+|+|+++|++.+... +++.+|... ...+.|+++++.+..+.+++.++|++|+|+.|++.+++|++.+|+
T Consensus 374 ~l~n~l~N~~~r~~~~~~~-----~~~~~~~~~--~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~ 446 (542)
T 3u1f_A 374 ELADTLGNLVMRCTSAKIN-----VNGEWPSPA--AYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA 446 (542)
T ss_dssp TTTTTHHHHHHHHHCTTTS-----TTSBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-----CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7777787999999975110-----257778620--002779999987642477777788878999999999999999999
Q ss_pred HHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98731001002699677999999999999999984016002899999998099975555445545764323687767899
Q 003601 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPA 564 (808)
Q Consensus 485 y~~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 564 (808)
|++..+||++.+++++++.+++++++++++.+++||+||||++|++||++||++......+.. ..|+.+++
T Consensus 447 Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~---------~~~~~l~~ 517 (542)
T 3u1f_A 447 YVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIEN---------FEFGAVPP 517 (542)
T ss_dssp HHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGG---------GSTTCSCT
T ss_pred HHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---------CCCCCCCC
T ss_conf 999658664435899999999999999999999999869679999999987999765555233---------10257999
Q ss_pred CCCCC---CCCCCCCCCCHHHHH
Q ss_conf 98118---998876687826899
Q 003601 565 GHKIG---SPNPLFKELKDDEVE 584 (808)
Q Consensus 565 g~~i~---~~~~LF~ri~~~~i~ 584 (808)
|++|+ ++++||+||++++++
T Consensus 518 g~~i~~~~~~~~LF~kie~e~~e 540 (542)
T 3u1f_A 518 GTRLGPAVEGEVLFSKRSTENTK 540 (542)
T ss_dssp TCBCCCCCTTCCSSCCCCCCC--
T ss_pred CCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 89867767778773888723433
No 4
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=1.00 E-value=1 Score=897.64 Aligned_cols=521 Identities=21% Similarity=0.361 Sum_probs=468.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99992999907999999474517633535999999999988992468469524648999999981999999999999999
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (808)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~~~~~~~~~ 98 (808)
.+++++|||+|+|||||+|||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++++++.|
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~ 101 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYS-TLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 57997899699888999988455588-99999999999973994798457588884788899986999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99997647324555778976799999999998985796664105530048879523454013547898777778677300
Q 003601 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (808)
Q Consensus 99 ~~~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cP~~~Cg~~~~~gd~c 178 (808)
++++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.++++||++|++|++|+++.+.|+. +|+.|
T Consensus 102 ~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~--------~g~~c 173 (564)
T 3kfl_A 102 KQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR--------DGKPC 173 (564)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHCCCCCC--------CCCEE
T ss_conf 9999982998771465798889999999999999789989864458763886877777985057677--------89970
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECC-
Q ss_conf 0027877765567985666899718933066447160039999999980877999885699999999870576400001-
Q 003601 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR- 257 (808)
Q Consensus 179 e~cG~~l~~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR- 257 (808)
.. +.+||++++.+.++||||+|++++++|.+|+++++.+ .+|...++.+.+|+++||+||||||
T Consensus 174 ~~--------------~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~wl~~gl~D~~ISR~ 238 (564)
T 3kfl_A 174 KV--------------SLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNC-IVPEFRRREVIKTVEKGLFDLSISRK 238 (564)
T ss_dssp EE--------------ETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEEE
T ss_pred CC--------------CCCCCCCCEEEECCEEEEEHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 12--------------0599992179732606878799899999999838876-18999999999998579977301075
Q ss_pred ---CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCHH---------H--HHHCCCCCCCCEEEEEEECCCCCHHCH
Q ss_conf ---36898424976678966999961552134420389346---------7--641289998515999961365301407
Q 003601 258 ---DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE---------W--EQWWKNPENVELYQFMGKDNVPFHTVM 323 (808)
Q Consensus 258 ---~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~---------~--~~~W~~p~d~~~i~~iGkDii~fH~v~ 323 (808)
+++||||||++ +++|+||||||+++|++++..|+.+ | ++|| |.| +|++||||++||+++
T Consensus 239 ~~~~~~WGipiP~~--~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~w--p~d---v~~~GkDii~FH~~~ 311 (564)
T 3kfl_A 239 RESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRW--PAD---VHVVGKDILKFHAIY 311 (564)
T ss_dssp GGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCC--SCS---EEEEEGGGHHHHHTH
T ss_pred CCCCCCCCEECCCC--CCCEEEEECCCCHHHHHHHCCCCCCCCCCCCHHCCHHHHCC--CCC---EEEEEECCCCHHHHH
T ss_conf 88888877255899--99789993068687898707163556543201103043158--651---599840400119999
Q ss_pred HHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99973207998456827997201544897433346874482344212999525899987149987785447999999877
Q 003601 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (808)
Q Consensus 324 wpa~l~a~g~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n 403 (808)
||++|+++|. ++|+.+++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++|+++.+..++|
T Consensus 312 wpa~L~a~g~--~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~-~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n 388 (564)
T 3kfl_A 312 WPAFLMSAEL--PLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAK-EFGIDALKYFLMRESNFQDDGDYSDKNMVARLN 388 (564)
T ss_dssp HHHHHHHTTC--CCCSCEEEECCEEETTEECCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHH
T ss_pred HHHHHHHCCC--CCCCEEEECCCEEECCCCCCCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999996799--9886798715384088035656988789899998-759199999999749965687779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996709999999986789898687599999999999999999999983029999999999999977
Q 003601 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (808)
Q Consensus 404 ~~L~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N 483 (808)
++|++++||+++|+++++.. +++.+|... ...+.|+++++.+..+.+.+.++|++++++.|++.+++|++.+|
T Consensus 389 ~~l~~~l~N~~~R~~~~~~~-----~~g~~p~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n 461 (564)
T 3kfl_A 389 GELADTLGNLVSRCVAPKIN-----VNGMWPEPA--EYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLN 461 (564)
T ss_dssp HTTTTTHHHHHHHHHCTTTS-----TTSBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----CCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999995-----388678877--78877999999999999999999872469999999999999999
Q ss_pred HHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99873100100269967799999999999999998401600289999999809997555544554576432368776789
Q 003601 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (808)
Q Consensus 484 ~y~~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~ 563 (808)
+|++..+||.+.+++.+++.+++++++++++.+++||+||||++|++||++||++......|.+ ..++.++
T Consensus 462 ~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~---------~~~~~~~ 532 (564)
T 3kfl_A 462 AYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMEN---------YLFGIVK 532 (564)
T ss_dssp HHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGG---------SSSCCSC
T ss_pred HHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---------HHCCCCC
T ss_conf 9998528742205899999999999999999999999727549999999980898301269767---------2035689
Q ss_pred CCCCCCCC---CCCCCCCCHHHHHHHHHH
Q ss_conf 99811899---887668782689999966
Q 003601 564 AGHKIGSP---NPLFKELKDDEVEFFRSK 589 (808)
Q Consensus 564 ~g~~i~~~---~~LF~ri~~~~i~~~~~~ 589 (808)
+|++|+++ +|||+||+.+++++++++
T Consensus 533 ~g~~~~~~~~~~~lf~r~~~~~~~~~~~~ 561 (564)
T 3kfl_A 533 PGTKIAGLAEGQVVFQKVTLPTEEGERSS 561 (564)
T ss_dssp TTCBCCCCCTTCCSSCCCCCC--------
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 98980898778888289895211265534
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=1.00 E-value=1 Score=847.22 Aligned_cols=509 Identities=25% Similarity=0.435 Sum_probs=459.3
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99929999079999994745176335359999999999889924684695246489999999819999999999999999
Q 003601 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (808)
Q Consensus 20 g~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~~~~~~~~~~ 99 (808)
+++++|||+|+|||||++||||+++ ++.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++++++++.|+
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~-~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~ 101 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYE-LIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFR 101 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 8998899589888999967224388-999999999999659967984686986659999999859999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99976473245557789767999999999989857966641055300488795234540135478987777786773000
Q 003601 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (808)
Q Consensus 100 ~~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cP~~~Cg~~~~~gd~ce 179 (808)
+++++|||++|.|+||+++.|...++++|.+|.++|+||++.+.+|||++|++|++|+++... ..|+
T Consensus 102 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~----------~~g~--- 168 (536)
T 4dlp_A 102 RMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR----------ADGV--- 168 (536)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC----------TTSC---
T ss_pred HHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCCCCCCCHHHHHCC----------CCCC---
T ss_conf 999982997882314898789999999999999789989832136525875766578984048----------8988---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCC-
Q ss_conf 0278777655679856668997189330664471600399999999808779998856999999998705764000013-
Q 003601 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD- 258 (808)
Q Consensus 180 ~cG~~l~~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~- 258 (808)
.|++||++++.+.++||||+|+++++.+.+++++.+.. .+|....+.+.+|++++++||||||+
T Consensus 169 --------------~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~~l~~~l~D~~ISR~~ 233 (536)
T 4dlp_A 169 --------------RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGF-IMPAERRNEIVSFVKSGLKDLSISRTT 233 (536)
T ss_dssp --------------EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHTCCCCEECEEC-
T ss_pred --------------CCCCCCCCCEEEECCCEEEECHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf --------------63688980369732634874388899999999838876-596899999999985678866774688
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCC---HHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHCCCCC
Q ss_conf 68984249766789669999615521344203893---467641289998515999961365301407999732079984
Q 003601 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (808)
Q Consensus 259 ~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~---~~~~~~W~~p~d~~~i~~iGkDii~fH~v~wpa~l~a~g~~~ 335 (808)
++||||||.+ +++++||||||+++|++.+ +|+ .+|+.|| |.| +|++|+||++||+++||++|+++|.+
T Consensus 234 ~~WGipiP~~--~~~v~yvWfda~~~y~s~~-~~~~~~~~~~~~~--p~d---v~~~G~D~~~fh~~~~~a~l~a~g~~- 304 (536)
T 4dlp_A 234 FDWGIPVPGD--EKHVMYVWVDALTNYITAL-GYPDTTDERWAYW--PAN---AHIIGKDISRFHAVYWPAFLMSAQLP- 304 (536)
T ss_dssp -CCSCBCTTC--TTSEECHHHHHHHHHHHTT-TTTCTTSGGGGGC--SCS---EEEEEGGGHHHHHTHHHHHHHHTTCC-
T ss_pred CCCCEECCCC--CCCCEEEEECCCHHHHHHC-CCCCCCHHHHHHC--CCC---EEEEECHHHHHHHHHHHHHHHHCCCC-
T ss_conf 7278367888--8886588647858878764-8987753788618--760---69951328777899999999977999-
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56827997201544897433346874482344212999525899987149987785447999999877999999999999
Q 003601 336 TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFIN 415 (808)
Q Consensus 336 ~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n~~L~~~lgNl~~ 415 (808)
+|+.+++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+++.+..++|++|++++||+++
T Consensus 305 -~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~-~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 382 (536)
T 4dlp_A 305 -LPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVE-RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQ 382 (536)
T ss_dssp -CCSCEEEECCEEC------------CCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred -CCCEEEEEEEEEECCCEECCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -982898640386277451552888789899998-859689999998469987888779999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHC
Q ss_conf 99996709999999986789898687599999999999999999999983029999999999999977998731001002
Q 003601 416 RVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLY 495 (808)
Q Consensus 416 R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~~~pW~l~ 495 (808)
|+++++.+ ++++.+|... ...+.|++++..+..+.+.+.++|++++++.|++.+++|++.+|+|++..+||.+.
T Consensus 383 R~~~~~~~----~~~~~~p~~~--~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~ 456 (536)
T 4dlp_A 383 RSLSMIAK----NCEGKVPQPG--AFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALR 456 (536)
T ss_dssp HHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHH----HCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 99999986----2378778866--68877899999999999999999974689999999999999999999837863212
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69967799999999999999998401600289999999809997555544554576432368776789998118998876
Q 003601 496 KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLF 575 (808)
Q Consensus 496 k~~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~LF 575 (808)
+++.+++.+++++++++++.+++||+||||++|++||++||++.... .|.+. ..| .+++|++|++++|||
T Consensus 457 ~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~~-~~~~~--------~~~-~~~~g~~~~~~~~lf 526 (536)
T 4dlp_A 457 KTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR-QFADV--------LAS-PLAGGTDLPAPQPVF 526 (536)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTSC-STHHH--------HHC-CCCTTCBCCCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC-CHHHH--------HHC-CCCCCCCCCCCCCCC
T ss_conf 79999999999999999999999842824689999999739995536-77775--------203-589989868998788
Q ss_pred CCCCHHHHH
Q ss_conf 687826899
Q 003601 576 KELKDDEVE 584 (808)
Q Consensus 576 ~ri~~~~i~ 584 (808)
+||++++.+
T Consensus 527 ~ri~~~~~~ 535 (536)
T 4dlp_A 527 PRYVEADEQ 535 (536)
T ss_dssp CCCC-----
T ss_pred CCCCCCCCC
T ss_conf 889976567
No 6
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=1.00 E-value=1 Score=800.16 Aligned_cols=505 Identities=27% Similarity=0.451 Sum_probs=448.7
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99992999907999999474517633535999999999988992468469524648999999981999999999999999
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (808)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~~~~~~~~~ 98 (808)
-|++.++||||+|||||+|||||+++ ++.+|+++||+||+|++|.|++|||+||+||+.+|+++|++|+++|+++.+.|
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~-~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYE-YIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89889899618989999734044587-89999999999836980055577086648999999986999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCH
Q ss_conf 99997647324555778976799999999998985796664105530048879523454013-54789877777867730
Q 003601 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQ 177 (808)
Q Consensus 99 ~~~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cP~~~Cg~~~~~gd~ 177 (808)
++++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+.++||+.|++|+++++++ |+ |
T Consensus 88 ~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~-----~--------- 153 (524)
T 2x1l_A 88 QRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQP-----D--------- 153 (524)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECT-----T---------
T ss_pred HHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCHHHHCCCC-----C---------
T ss_conf 99999809827878126988899999999999997899796214641367547551688840688-----8---------
Q ss_pred HHCCCCCCCCCCCCCCCCC-CCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEC
Q ss_conf 0002787776556798566-689971893306644716003999999998087799988569999999987057640000
Q 003601 178 CENCGKLLNATDLKDPKCK-VCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256 (808)
Q Consensus 178 ce~cG~~l~~~~l~~p~c~-~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IS 256 (808)
| +.|+ +||++++.+.++||||++++|++++.+++++++.. .+|...++...+|+.++++|||||
T Consensus 154 ----G----------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~-i~p~~~~~~~~~~~~~~l~Dw~iS 218 (524)
T 2x1l_A 154 ----G----------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEF-IGPDARRNEIVSFVSGGLKDLSIS 218 (524)
T ss_dssp ----S----------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGG-EESHHHHHHHHHHHTTCCCCEECE
T ss_pred ----C----------CCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHHCCCE-ECCHHHHHHHHHHHHCCCCCCCEE
T ss_conf ----9----------9561103991638733776865799999999999849980-487889999999987699631107
Q ss_pred CC-CCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCH----HHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHC
Q ss_conf 13-689842497667896699996155213442038934----6764128999851599996136530140799973207
Q 003601 257 RD-LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (808)
Q Consensus 257 R~-~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~----~~~~~W~~p~d~~~i~~iGkDii~fH~v~wpa~l~a~ 331 (808)
|+ +.||+|+|.+ +++++|||||++++|++.. +|+. .++.|| |.| +|++|+||++||+++|||+++++
T Consensus 219 Rqr~~WG~~iP~~--~~~~~yvWfds~~~~~~~~-g~p~~~~~~~~~~~--p~d---i~~~G~D~~~fh~~~~~a~l~~~ 290 (524)
T 2x1l_A 219 RTTFDWGVPVPDH--PDHVMYVWVDALTNYLTGV-GFPDTESESFRRYW--PAD---LHMIGKDIIRFHTVYWPAFLMSA 290 (524)
T ss_dssp ESSCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTCTTSHHHHHHC--SCS---EEEEEGGGHHHHHTHHHHHHHHH
T ss_pred CCCCCCCCCCCCC--CCCEEEEECCCCHHHHHHC-CCCCCCHHHHHHHC--CCE---EEEEEECHHHHHHHHHHHHHHHC
T ss_conf 7898758608999--9987999667866779773-79887617898618--871---79975105575799999999977
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99845682799720154489743334687448234421299952589998714998778544799999987799999999
Q 003601 332 GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLG 411 (808)
Q Consensus 332 g~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n~~L~~~lg 411 (808)
|. ++|+++++|||++.+|+|||||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+.+..|++|+++++
T Consensus 291 g~--~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 291 GL--PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD-TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp TC--CCCSCEEEECCEEECSCSEETTTEESSCHHHHHH-HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred CC--CCCCEEEECCEEEECCCCCCCCCCCCCCHHHHHH-HCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99--9884998876797388613775898779899998-76907999999955998889775999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999670999999998678989868759999999999999999999998302999999999999997799873100
Q 003601 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491 (808)
Q Consensus 412 Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~~~p 491 (808)
|+++|+..++.+ ++++.+|... ...+.|++++..+..+.+.+.++|++++++.|+..+++|++.+|+|++..+|
T Consensus 368 n~~~r~~~~~~~----~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 368 NLAQRSLSMVAK----NLGAAVPDPG--EFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH----HCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999998----6289788865--5666579999999999999999997378999999999999999999984487
Q ss_pred HHHCCC----CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100269----9677999999999999999984016002899999998099975555445545764323687767899981
Q 003601 492 WKLYKE----DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHK 567 (808)
Q Consensus 492 W~l~k~----~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 567 (808)
|.+.++ +..++.++++++.++++.+++||+||||++|++||++||.+... ..|.+ .. . .+++|++
T Consensus 442 w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~-~~~~~-------~~--~-~~~~~~~ 510 (524)
T 2x1l_A 442 WVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDE-RDFSA-------IA--N-RIKPGTS 510 (524)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTS-CSGGG-------GS--S-CCCTTCB
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHH-------HH--H-CCCCCCC
T ss_conf 443157563479999999999999999999999636409999999974999554-65667-------52--1-4789987
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 18998876687826
Q 003601 568 IGSPNPLFKELKDD 581 (808)
Q Consensus 568 i~~~~~LF~ri~~~ 581 (808)
|+++.|||+||+.+
T Consensus 511 ~~~~~~lf~~~~~~ 524 (524)
T 2x1l_A 511 LPAPSGIFPRYQND 524 (524)
T ss_dssp CCCCCCSSCCCC--
T ss_pred CCCCCCCCCCCCCC
T ss_conf 78998887878999
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=1.00 E-value=1 Score=780.31 Aligned_cols=493 Identities=25% Similarity=0.448 Sum_probs=438.7
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99299990799999947451763353599999999998899246846952464899999998199999999999999999
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
.+++|||+|+|||||++||||+++ ++.+|+++||+||+|++|.|++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYT-TVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 986899569988889722436788-9999999999980799405315348764999999998599999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99764732455577897679999999999898579666410553004887952345401354789877777867730000
Q 003601 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (808)
Q Consensus 101 ~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cP~~~Cg~~~~~gd~ce~ 180 (808)
++++|||++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++|++++++
T Consensus 81 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l--------------------- 139 (500)
T 2d5b_A 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL--------------------- 139 (500)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS---------------------
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCHHC---------------------
T ss_conf 99993981788821698889999999999999889979523677027875856671111---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECC---
Q ss_conf 27877765567985666899718933066447160039999999980877999885699999999870576400001---
Q 003601 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR--- 257 (808)
Q Consensus 181 cG~~l~~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR--- 257 (808)
++++|++||.+++.+.++||||+++++++.+.+++++++.+ ..+...++...+|++++++||||||
T Consensus 140 ----------~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~l~Dw~iSRp~~ 208 (500)
T 2d5b_A 140 ----------VEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDL-IRPEGYRNEVLAMLAEPIGDLSISRPKS 208 (500)
T ss_dssp ----------BTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTS-EESHHHHHHHHHHHTSCCCCEECEEETT
T ss_pred ----------CCCCCCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHCCCE-ECCHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf ----------47837888985159854735888089899999999829871-4878899999999866898754420566
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCH--HHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHCCCCC
Q ss_conf 3689842497667896699996155213442038934--67641289998515999961365301407999732079984
Q 003601 258 DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN--EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (808)
Q Consensus 258 ~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~--~~~~~W~~p~d~~~i~~iGkDii~fH~v~wpa~l~a~g~~~ 335 (808)
++.||+|+|.+ +++++||||||+++|++.. +|+. +++.+|+ .| +|++|+|+++||+++||++++++|.
T Consensus 209 ~~~WG~piP~~--~~~v~~vWfds~~~y~~~~-g~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~~~~~g~-- 278 (500)
T 2d5b_A 209 RVPWGIPLPWD--ENHVTFVWFDALLNYVSAL-DYPEGEAYRTFWP--HA---WHLIGKDILKPHAVFWPTMLKAAGI-- 278 (500)
T ss_dssp TCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTTCHHHHHHGG--GE---EEEEEGGGHHHHHTHHHHHHHHHTC--
T ss_pred CCCCCCCCCCC--CCCEEEECCCCCHHHHHHC-CCCCCCHHHHCCC--CE---EEEEEECHHHHHHHHHHHHHHHCCC--
T ss_conf 66686145778--9983687120320167772-7988862777099--81---8997402203499999999997699--
Q ss_pred CCCCEEEEEEEEEC-CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56827997201544-89743334687448234421299952589998714998778544799999987799999999999
Q 003601 336 TLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (808)
Q Consensus 336 ~lp~~i~~hg~l~~-~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n~~L~~~lgNl~ 414 (808)
++|+++++|||++. +|+|||||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+.++.|+.|+++++|++
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~ 357 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHH
T ss_pred CCCCEEEECCEEEECCCCCCCCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98828988766881799701665777789899987-66928999999936986568888999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999670999999998678989868759999999999999999999998302999999999999997799873100100
Q 003601 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (808)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~~~pW~l 494 (808)
+|+..++.+ .+++.++... +++++..+..+.+.+.++|++++++.|+..++++++.+|+|++..+||.+
T Consensus 358 ~r~~~~~~~----~~~~~~~~~~-------~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~ 426 (500)
T 2d5b_A 358 QRTRAMLFR----FAEGRIPEPV-------AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWEL 426 (500)
T ss_dssp HHHHHHHHH----HSTTBCCCCC-------CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH----HCCCCCCCHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999998----6289999645-------89999999999999999998059999999999999999999884586421
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26996779999999999999999840160028999999980999755554455457643236877678999811899887
Q 003601 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (808)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (808)
.+++.+++.++++++.++++.+++||+||||++|++||++||.+. . ..|.+ . ..|+.+++|+++++++||
T Consensus 427 ~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~-~-~~~~~-------~-~~~~~~~~~~~~~~~~~l 496 (500)
T 2d5b_A 427 FKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE-E-VRLEE-------A-ERWGLAEPRPIPEEAPVL 496 (500)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS-S-CCGGG-------G-GSSCCSCCCBCCSCCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC-C-CCHHH-------H-HHCCCCCCCCCCCCCCCC
T ss_conf 267589999999999999999999860813689999998759974-4-57555-------4-220468898877899889
Q ss_pred CCCC
Q ss_conf 6687
Q 003601 575 FKEL 578 (808)
Q Consensus 575 F~ri 578 (808)
|+||
T Consensus 497 f~~~ 500 (500)
T 2d5b_A 497 FPKK 500 (500)
T ss_dssp SCCC
T ss_pred CCCC
T ss_conf 7899
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=1.00 E-value=1 Score=776.08 Aligned_cols=490 Identities=28% Similarity=0.466 Sum_probs=434.6
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99299990799999947451763353599999999998899246846952464899999998199999999999999999
Q 003601 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (808)
Q Consensus 21 ~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~g~~p~e~~~~~~~~~~~ 100 (808)
++++|||+|+|||||.|||||+++ ++.+|+++||+||+|++|.|++|||+||+||+.+|+++|++|+++++++.+.|++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYT-TIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 996899608988988601536898-9999999999984699346426607871999999998699999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99764732455577897679999999999898579666410553004887952345401354789877777867730000
Q 003601 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (808)
Q Consensus 101 ~~~~l~I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cP~~~Cg~~~~~gd~ce~ 180 (808)
++++|||++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++|++++++..
T Consensus 83 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~------------------- 143 (497)
T 2csx_A 83 LWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE------------------- 143 (497)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------------------
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCEECCHHHHCC-------------------
T ss_conf 9999388678781179988999999999999978898853622103764382756788444-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECC---
Q ss_conf 27877765567985666899718933066447160039999999980877999885699999999870576400001---
Q 003601 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR--- 257 (808)
Q Consensus 181 cG~~l~~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR--- 257 (808)
.++|++||.+++.+.++||||+|+++++++.+++++++.. ..+...++...+|++++++||||||
T Consensus 144 -----------~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~Dw~isR~~~ 211 (497)
T 2csx_A 144 -----------DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEF-IQPDYRRNEIISFVKQGLKDLSVTRPRS 211 (497)
T ss_dssp -------------------------CCEEEEECTTSSHHHHHHHHHHCTTS-BCSHHHHHHHHHHHHHCCCCEECEEETT
T ss_pred -----------CCCCCCCCCCCEEEECCCEEEECHHHHHHHHHHHHHCCCE-ECCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf -----------8988777998729735766898478799999999839974-3767899999999966886655336688
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHCCCCCCC
Q ss_conf 36898424976678966999961552134420389346764128999851599996136530140799973207998456
Q 003601 258 DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337 (808)
Q Consensus 258 ~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~W~~p~d~~~i~~iGkDii~fH~v~wpa~l~a~g~~~~l 337 (808)
+++||+|+|++ +++++||||||+++|.+++. +...++| |.| +|++|+|+++||+++||++++++|. ++
T Consensus 212 ~~~WG~~iP~~--~~~~i~vW~ds~~~~~s~~~---~~~~~~~--p~d---i~~~G~D~~~~H~~~~~a~l~~~g~--~~ 279 (497)
T 2csx_A 212 RVKWGIPVPFD--PEHTIYVWFDALFNYISALE---DKVEIYW--PAD---LHLVGKDILRFHTVYWPAFLMSLGY--EL 279 (497)
T ss_dssp TCCSSEEETTE--EEEEECSHHHHHTHHHHTTT---TTHHHHC--SCS---CEEEEGGGHHHHHTHHHHHHHHHTC--CC
T ss_pred CCCCCEECCCC--CCCEEEEECCCCHHHCCCCC---CCCHHHC--CCE---EEEEECCHHHHHHHHHHHHHHHCCC--CC
T ss_conf 77875015899--99669995346654413678---8603309--963---8995034667489999999997699--98
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82799720154489743334687448234421299952589998714998778544799999987799999999999999
Q 003601 338 MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRV 417 (808)
Q Consensus 338 p~~i~~hg~l~~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n~~L~~~lgNl~~R~ 417 (808)
|+++++|||++.+|+|||||+||+|++.++++ .||+|++|||+++.+++++|++||++.+..+.|++|+++++|+++|+
T Consensus 280 ~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~ 358 (497)
T 2csx_A 280 PKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRV 358 (497)
T ss_dssp CSCEEEECCEESSSSBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CCEEEECCEEEECCCEECCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81998875797578524774888779899998-77918999999934996569978967888898899999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
Q ss_conf 99670999999998678989868759999999999999999999998302999999999999997799873100100269
Q 003601 418 LSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKE 497 (808)
Q Consensus 418 ~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~~~pW~l~k~ 497 (808)
.+++.+ .+++.++. +.|++++..+..+.+.+.++|++++++.|+..+++|++.+|+|++..+||.+.++
T Consensus 359 ~~~~~~----~~~~~~~~-------~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~ 427 (497)
T 2csx_A 359 VNMAHK----FLGGEVSG-------ARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKE 427 (497)
T ss_dssp HHHHHH----HSTTCBCC-------CCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT
T ss_pred HHHHHH----HCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 999998----63788994-------6679999999999999999998358999999999999999999984575342045
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -9677999999999999999984016002899999998099975555445545764323687767899981189988766
Q 003601 498 -DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576 (808)
Q Consensus 498 -~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~LF~ 576 (808)
+.+++.++++++.++++.+++||+||||++|++||++||.+.. .|.+ ..|+.+ |++|++++|||+
T Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~---~~~~---------~~~~~~--~~~~~~~~~lf~ 493 (497)
T 2csx_A 428 RKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEF---LKEL---------KPYSKN--TYKLGERKILFP 493 (497)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSCC---CSSC---------CSCCCS--CBCCCCCCCSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC---CHHH---------CCCCCC--CCCCCCCCCCCC
T ss_conf 34999999999999999999998608038999999997399855---4344---------013547--875788888879
Q ss_pred CCCH
Q ss_conf 8782
Q 003601 577 ELKD 580 (808)
Q Consensus 577 ri~~ 580 (808)
||+.
T Consensus 494 ~~~~ 497 (497)
T 2csx_A 494 KREG 497 (497)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 9998
No 9
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=1.00 E-value=1 Score=732.33 Aligned_cols=496 Identities=20% Similarity=0.277 Sum_probs=400.5
Q ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC-CCCH----------
Q ss_conf 99992999907999999474517633535999999999988992468469524648999999981-9999----------
Q 003601 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSP---------- 87 (808)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~~-g~~p---------- 87 (808)
.++++|+|++|+|||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+.+|+++ |++|
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~~-~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~ 113 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQAR-SYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIE 113 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHHH-HHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCHH
T ss_conf 899968995289999998704455737-9999999999956994034364367786579999998462555207655999
Q ss_pred ------HHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCCCCCCC
Q ss_conf ------9999999999999997647--32455577897679999999999898579666410553004887952345401
Q 003601 88 ------KEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (808)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~l~--I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (808)
.++++++.+.+++++++|| +.+|++++|+++.|.+.+|++|.+|+++|+||++.++++|||.|+++|+|++|
T Consensus 114 ~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 114 RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEECCHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCCCCCHHHH
T ss_conf 99999999999999999999998287571579858789899999999999999869855447425731788976317675
Q ss_pred -CCC----------------------------------------------------------------------------
Q ss_conf -354----------------------------------------------------------------------------
Q 003601 160 -EGT---------------------------------------------------------------------------- 162 (808)
Q Consensus 160 -~g~---------------------------------------------------------------------------- 162 (808)
+|.
T Consensus 194 ~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~ 273 (821)
T 1ile_A 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGT 273 (821)
T ss_dssp HHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTS
T ss_pred HCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHCEEEEECCCCCEEEEECCCCEEEEHHHHHHHHHHHCC
T ss_conf 15720466845999998358766678898899994997214345799998997156787179479862899999984085
Q ss_pred -----------------------------------------------CCCCCCCCCCCC---------CCHHHCCCCCCC
Q ss_conf -----------------------------------------------789877777867---------730000278777
Q 003601 163 -----------------------------------------------CPFEGCNYESAR---------GDQCENCGKLLN 186 (808)
Q Consensus 163 -----------------------------------------------cP~~~Cg~~~~~---------gd~ce~cG~~l~ 186 (808)
||. ||.+|.. -..|+.||.+.+
T Consensus 274 ~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~id~~G~~~~ 351 (821)
T 1ile_A 274 QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPA--FGAEDLETARVYGLPLLKTVDEEGKLLV 351 (821)
T ss_dssp CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTT--SCHHHHHHHHHTTCCCCCCBCTTSBBCS
T ss_pred EEEEEECHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEECCC--CCHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 89887506874598898677666898779985471866889764474477--9878999999859983204789973733
Q ss_pred C---------------CCC--------------CCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 6---------------556--------------79856668997189330664471600399999999808779998856
Q 003601 187 A---------------TDL--------------KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN 237 (808)
Q Consensus 187 ~---------------~~l--------------~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~ 237 (808)
. .+| ..|+|||||++++.+.++||||+++++++++++++++..+.|.+..
T Consensus 352 ~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~- 430 (821)
T 1ile_A 352 EPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIK- 430 (821)
T ss_dssp GGGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGT-
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCCCEEEEEECCHHHHCHHHHHHHHHHHHCCEEEECCHHH-
T ss_conf 6768979899889999999967991300023125877468899799983551552669999999997568189783446-
Q ss_pred HHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCC----------------------------------------------
Q ss_conf 9999999987057640000136898424976678----------------------------------------------
Q 003601 238 AIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK---------------------------------------------- 271 (808)
Q Consensus 238 ~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~---------------------------------------------- 271 (808)
.+...+|++ +|+|||||||+.||+|||.|.++
T Consensus 431 -~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~ 508 (821)
T 1ile_A 431 -EGRYGEWLK-NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTM 508 (821)
T ss_dssp -TTTTHHHHH-TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEE
T ss_pred -HHHHHHHHH-CCCHHEECCCCCCCCEEEEEEECCCCCEEEECCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCH
T ss_conf -769999983-771310004677788231899659996785275999975055666212220431001233578899763
Q ss_pred ---CCEEEEEECCCCHHHHHCCCCC----HHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHC-CCCCCCCCEEEE
Q ss_conf ---9669999615521344203893----46764128999851599996136530140799973207-998456827997
Q 003601 272 ---EKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT-GENWTLMKTISV 343 (808)
Q Consensus 272 ---~~viyVWfDA~~~Yis~~~~~~----~~~~~~W~~p~d~~~i~~iGkDii~fH~v~wpa~l~a~-g~~~~lp~~i~~ 343 (808)
.+|+|||||+.+.|++.. +|+ +.|+.|| |+| +|+.|+|+++||.....++..++ +. .+++++++
T Consensus 509 ~r~~dvld~WfdS~~~~~~~~-~~p~~~~~~f~~~~--P~d---l~~~G~D~~r~w~~~~~~~~~~~~~~--~pf~~v~~ 580 (821)
T 1ile_A 509 RRVPYVIDVWYDSGAMPFASL-HYPFEHEEVFRESF--PAD---FIAEGIDQTRGWFNSLHQLGVMLFGS--IAFKNVIC 580 (821)
T ss_dssp EECSCBCCHHHHHHHHHHHTT-TTTTSCHHHHHHHS--SBS---BEEEEGGGGGTHHHHHHHHHHHHHSS--CSBSEEEE
T ss_pred HHCCCCCCEECCCCCCHHHHC-CCCCCCHHHHHHCC--CCC---CCCCHHHHHCCHHHHHHHHHHHHCCC--CCCCEEEE
T ss_conf 216530001323661247650-89854667785338--861---00330656601999999989986298--77655999
Q ss_pred EEEEE-CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20154-48974333468744823442129995258999871499877854479999998779999999999999999670
Q 003601 344 TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIA 422 (808)
Q Consensus 344 hg~l~-~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D~dFs~~~~~~~~n~~L~~~lgNl~~R~~~~~~ 422 (808)
|||++ .+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++||++.+...+ ++++++++|+++|+..+..
T Consensus 581 hg~vl~~~G~KMSKS~GNvV~p~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~~ 658 (821)
T 1ile_A 581 HGLILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYAN 658 (821)
T ss_dssp ECCEECTTSSCCCTTTTCCCCHHHHHT-TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHH-HHCHHHHHHHHHHCCCCCCCCEECHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_conf 800998999877765788999999998-72979999999837898888575499987999-9999999999999998511
Q ss_pred CCCCCCCCCCCC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHC--CHHHCC
Q ss_conf 999999998678-98-9868759999999999999999999998302999999999999--99779987310--010026
Q 003601 423 KPPGQGYGSIVP-DA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQ--FWKLYK 496 (808)
Q Consensus 423 k~~~~~~~g~ip-~~-~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~N~y~~~~~--pW~l~k 496 (808)
. ++..| .. ........|+++++.+..+.+++.++|++++|+.|+..+++|+ ..+|.|++..+ +|...+
T Consensus 659 ~------~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~ 732 (821)
T 1ile_A 659 L------DRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED 732 (821)
T ss_dssp H------HCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT
T ss_pred C------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 1------3688533334333888899999999999999999997668999999999999999999999985211025777
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 996779999999999999999840160028999999980999
Q 003601 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (808)
Q Consensus 497 ~~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~~ 538 (808)
+ ..+ .+++.++.++++.+++||+||||++|++||++|+..
T Consensus 733 ~-~~r-~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~ 772 (821)
T 1ile_A 733 A-LDR-EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 772 (821)
T ss_dssp T-SST-THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred C-HHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 6-778-999999999999999870886665799999866333
No 10
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=1.00 E-value=1 Score=718.15 Aligned_cols=497 Identities=18% Similarity=0.223 Sum_probs=405.2
Q ss_pred CCCCCCCCCC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----
Q ss_conf 9999999999--9999299990799999947451763353599999999998899246846952464899999998----
Q 003601 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME---- 82 (808)
Q Consensus 9 ~~~~~~~~~~--~g~~~~~it~~~Py~Ng~lHlGH~~~~~i~aDv~~R~~r~~G~~v~~~~GtDehG~~I~~~A~~---- 82 (808)
|.+ ..|.+. .++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+.++++
T Consensus 20 W~~-~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~-~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 97 (862)
T 1gax_A 20 WAK-NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDN-SLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLK 97 (862)
T ss_dssp HHH-SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHH-HHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTT
T ss_pred HHH-CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 986-77756767899818997489999898663466888-9999999999947995024565287771999999999987
Q ss_pred CCCCHH------------HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECEEEEECCC
Q ss_conf 199999------------9999999999999976473245--55778976799999999998985796664105530048
Q 003601 83 DNCSPK------------EICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (808)
Q Consensus 83 ~g~~p~------------e~~~~~~~~~~~~~~~l~I~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (808)
+|++|+ ++++++++.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++|||
T Consensus 98 ~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp 177 (862)
T 1gax_A 98 EGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCP 177 (862)
T ss_dssp TTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEET
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 49996883999999999999999999999999982850357898216988999999999999987798883241366378
Q ss_pred CCCCCCCCCCCC-----C------------------------------------------------CCCCCCCCC-----
Q ss_conf 879523454013-----5------------------------------------------------478987777-----
Q 003601 149 TCKRFLADRLVE-----G------------------------------------------------TCPFEGCNY----- 170 (808)
Q Consensus 149 ~~~~~l~d~~v~-----g------------------------------------------------~cP~~~Cg~----- 170 (808)
.|+++|+|.+|+ | .||. |+.
T Consensus 178 ~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~--~~~~ipii 255 (862)
T 1gax_A 178 RCETTLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPL--TEVWIPIL 255 (862)
T ss_dssp TTTEEECGGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTT--CCCBCCEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCHHHHHCCCEEECCC--CCCEEEEE
T ss_conf 7585556522334455653899999946997799995885534513589989986078887597897888--89833697
Q ss_pred --------------------------------------CCCCCCHHHCC--CCC------------------------CC
Q ss_conf --------------------------------------78677300002--787------------------------77
Q 003601 171 --------------------------------------ESARGDQCENC--GKL------------------------LN 186 (808)
Q Consensus 171 --------------------------------------~~~~gd~ce~c--G~~------------------------l~ 186 (808)
-+..|.+|++| |.. ..
T Consensus 256 ~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~ 335 (862)
T 1gax_A 256 ADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEE 335 (862)
T ss_dssp ECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEE
T ss_pred ECCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 04521268897625855788823799999839986433579870423567755489699999999999998679845423
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCC
Q ss_conf 65567985666899718933066447160039999999980877999885699999999870576400001368984249
Q 003601 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVP 266 (808)
Q Consensus 187 ~~~l~~p~c~~~g~~~~~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP 266 (808)
+..+..|+|+|||++++.+.++|||++++++++++.+++++... ..+|.+..+...+|++ +++||||||+++||+|+|
T Consensus 336 ~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~pIP 413 (862)
T 1gax_A 336 DYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI-AFVPERWKKVNMDWLE-NVKDWNISRQLWWGHQIP 413 (862)
T ss_dssp EEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCC-EESSSHHHHHHHHHHH-TCCCCCCBCCCSSSCCCC
T ss_pred CCCCCCCEECCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCC-EECCHHHHHHHHHHHH-CCCCEEEECCCCCCCCCC
T ss_conf 44465872058897689995152798869999999999970995-6717899999999972-665636753567875568
Q ss_pred CCCCCC-CEEEEEE------------------------------CCCCHHHHHCCCCC---HHHHHHCCCCCCCCEEEEE
Q ss_conf 766789-6699996------------------------------15521344203893---4676412899985159999
Q 003601 267 LERFKE-KVFYVWF------------------------------DAPIGYVSITSCYT---NEWEQWWKNPENVELYQFM 312 (808)
Q Consensus 267 ~~~~~~-~viyVWf------------------------------DA~~~Yis~~~~~~---~~~~~~W~~p~d~~~i~~i 312 (808)
.|.+++ .++|||+ |+.+.|++. .+|+ .+++.|| |.| +|+.
T Consensus 414 ~w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~-~~~p~~~~~~~~~~--P~d---~~v~ 487 (862)
T 1gax_A 414 AWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLST-LGWPEETEDLKAFY--PGD---VLVT 487 (862)
T ss_dssp CEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGG-GTTTSCCHHHHHSC--SBS---CEEE
T ss_pred CEECCCCCEEEEECCCCCCCCCHHHHHCCCHHEECCCCCCCEEECCCCCCHHH-CCCCCCHHHHHHHC--CCE---EEEC
T ss_conf 43458999899712110355550234448211024776456210057750221-16887658898419--953---8962
Q ss_pred EECCCCCHHCHHHHHHHH-CCCCCCCCCEEEEEEEEE-CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 613653014079997320-799845682799720154-489743334687448234421299952589998714998778
Q 003601 313 GKDNVPFHTVMFPSTLLG-TGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (808)
Q Consensus 313 GkDii~fH~v~wpa~l~a-~g~~~~lp~~i~~hg~l~-~~G~KMSKS~Gn~I~~~e~l~~~~~~D~lRyyll~~~p~~~D 390 (808)
|+||++||....-++.+. .|. .+++++++||+++ .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|
T Consensus 488 G~Dii~~W~a~~~~~~~~~~g~--~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~ll~~~~~~~D 564 (862)
T 1gax_A 488 GYDILFLWVSRMEVSGYHFMGE--RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGGQD 564 (862)
T ss_dssp EGGGTTTTHHHHHHHHHHHSSS--CSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH-HCCHHHHHHHHHHCCCCCCC
T ss_conf 7302212999999999986199--96127999446983799776666888789999998-74908999999846877788
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 54479999998779999999999999999670999999998678989868759999999999999999999998302999
Q 003601 391 TLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQ 470 (808)
Q Consensus 391 ~dFs~~~~~~~~n~~L~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~ 470 (808)
++|+++.+... ++++++++|+...+... +++..+.. ......|+|+++.++.++.++.++|++|+|+.
T Consensus 565 ~~fs~~~l~~~--~~f~nkl~N~~rf~~~~--------~~~~~~~~--~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~ 632 (862)
T 1gax_A 565 IRLDLRWLEMA--RNFANKLYNAARFVLLS--------REGFQAKE--DTPTLADRFMRSRLSRGVEEITALYEALDLAQ 632 (862)
T ss_dssp EECCHHHHHHH--HHHHHHHHHHHHHHHHH--------SSSCCCCB--CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCCCHHHHHHH--HHHHHHHHHHHHHHHHC--------CCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 84688999999--99999999999999860--------25788865--44788899999999999999999997238879
Q ss_pred HHHHHHHHHH--HHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9999999999--977998731001002699677999999999999999984016002899999998099
Q 003601 471 GLKTAMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (808)
Q Consensus 471 al~~i~~l~~--~~N~y~~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~lL~Pi~P~~a~~i~~~Lg~ 537 (808)
|++.+++|+. .+|+|++..+||... + ..+++.++.++++.+++||+||||++|++||++|+.
T Consensus 633 A~~~l~~f~~~~~~n~Yie~~k~~l~~-~----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 696 (862)
T 1gax_A 633 AAREVYELVWSEFCDWYLEAAKPALKA-G----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG 696 (862)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHT-T----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999887657999870434313-2----899999999999999999703215799999996689
Done!