Your job contains 1 sequence.
>003602
MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA
AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV
YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK
DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI
ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY
LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA
DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL
GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF
DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS
TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW
GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL
LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY
IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP
KVTDDDDAKMAQMVCSLTNREECMACGS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003602
(808 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2052469 - symbol:RNR1 "ribonucleotide reductas... 3645 0. 1
MGI|MGI:98180 - symbol:Rrm1 "ribonucleotide reductase M1"... 1661 3.3e-292 2
UNIPROTKB|P23921 - symbol:RRM1 "Ribonucleoside-diphosphat... 1661 4.2e-292 2
RGD|1592569 - symbol:Rrm1 "ribonucleotide reductase M1" s... 1652 2.9e-291 2
UNIPROTKB|Q5R919 - symbol:RRM1 "Ribonucleoside-diphosphat... 1651 6.1e-291 2
UNIPROTKB|F1MSF1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1657 1.6e-290 2
ZFIN|ZDB-GENE-990415-247 - symbol:rrm1 "ribonucleotide re... 1644 4.3e-290 2
UNIPROTKB|E2R8P1 - symbol:RRM1 "Ribonucleoside-diphosphat... 1653 5.5e-290 2
POMBASE|SPAC1F7.05 - symbol:cdc22 "ribonucleoside reducta... 1651 8.0e-283 3
ASPGD|ASPL0000074083 - symbol:AN4380 species:162425 "Emer... 1640 1.7e-280 3
UNIPROTKB|Q9UW15 - symbol:rnr-1 "Ribonucleoside-diphospha... 1651 6.2e-280 2
FB|FBgn0011703 - symbol:RnrL "Ribonucleoside diphosphate ... 1608 1.5e-278 2
CGD|CAL0001524 - symbol:RNR1 species:5476 "Candida albica... 2621 2.0e-274 2
UNIPROTKB|Q5A0N3 - symbol:RNR1 "Ribonucleoside-diphosphat... 2621 2.0e-274 2
SGD|S000000872 - symbol:RNR1 "Major isoform of large subu... 2606 1.6e-272 2
WB|WBGene00004391 - symbol:rnr-1 species:6239 "Caenorhabd... 1572 1.6e-272 2
UNIPROTKB|Q03604 - symbol:rnr-1 "Ribonucleoside-diphospha... 1572 1.6e-272 2
DICTYBASE|DDB_G0284071 - symbol:rnrA "ribonucleoside-diph... 2618 2.8e-272 1
UNIPROTKB|E1C4Q0 - symbol:E1C4Q0 "Ribonucleoside-diphosph... 1659 5.5e-270 2
SGD|S000001328 - symbol:RNR3 "Minor isoform of the large ... 2565 1.7e-268 2
UNIPROTKB|P50648 - symbol:RNR1 "Ribonucleoside-diphosphat... 1552 5.7e-266 2
UNIPROTKB|E9PD78 - symbol:RRM1 "Ribonucleoside-diphosphat... 1376 6.0e-262 2
UNIPROTKB|O61065 - symbol:RNR1 "Ribonucleoside-diphosphat... 1472 4.8e-260 2
UNIPROTKB|P50647 - symbol:RNR1 "Ribonucleoside-diphosphat... 1493 3.5e-255 2
UNIPROTKB|O15909 - symbol:RNR1 "Ribonucleoside-diphosphat... 2294 6.0e-238 1
UNIPROTKB|E9PL69 - symbol:RRM1 "Ribonucleoside-diphosphat... 1168 5.9e-220 2
UNIPROTKB|F1SUZ5 - symbol:F1SUZ5 "Uncharacterized protein... 1160 1.5e-219 3
UNIPROTKB|Q8SR37 - symbol:ECU10_0920 "Ribonucleoside-diph... 1085 1.3e-206 2
UNIPROTKB|F5H861 - symbol:RRM1 "Ribonucleoside-diphosphat... 1168 3.1e-164 2
TIGR_CMR|CBU_1553 - symbol:CBU_1553 "ribonucleoside-dipho... 1266 1.4e-131 2
UNIPROTKB|Q48FF6 - symbol:nrdA "Ribonucleoside-diphosphat... 1251 3.8e-129 2
UNIPROTKB|Q886B0 - symbol:nrdA "Ribonucleoside-diphosphat... 1249 6.2e-129 2
CGD|CAL0002354 - symbol:RNR3 species:5476 "Candida albica... 1258 3.6e-128 1
UNIPROTKB|Q59M54 - symbol:RNR3 "Ribonucleoside-diphosphat... 1258 3.6e-128 1
UNIPROTKB|Q607W9 - symbol:nrdA "Ribonucleoside-diphosphat... 1244 1.1e-126 1
UNIPROTKB|Q5HXD4 - symbol:nrdA "Ribonucleoside-diphosphat... 682 3.1e-106 4
TIGR_CMR|CJE_0024 - symbol:CJE_0024 "ribonucleoside-dipho... 682 3.1e-106 4
UNIPROTKB|Q71XL1 - symbol:nrdA "Ribonucleoside-diphosphat... 742 5.8e-80 2
TIGR_CMR|CPS_2328 - symbol:CPS_2328 "ribonucleoside-dipho... 569 4.8e-60 2
TIGR_CMR|NSE_0411 - symbol:NSE_0411 "ribonucleoside-dipho... 282 6.7e-59 3
UNIPROTKB|Q9KSK0 - symbol:VC1256 "Ribonucleoside-diphosph... 558 4.5e-57 2
TIGR_CMR|VC_1256 - symbol:VC_1256 "ribonucleoside-diphosp... 558 4.5e-57 2
TIGR_CMR|APH_0331 - symbol:APH_0331 "ribonucleoside-dipho... 296 1.1e-54 3
UNIPROTKB|P00452 - symbol:nrdA species:83333 "Escherichia... 543 1.7e-53 2
TIGR_CMR|BA_1371 - symbol:BA_1371 "ribonucleoside-diphosp... 493 1.0e-49 3
UNIPROTKB|I3LEK6 - symbol:I3LEK6 "Ribonucleoside-diphosph... 509 2.5e-48 1
TIGR_CMR|SO_2415 - symbol:SO_2415 "ribonucleoside-diphosp... 497 1.3e-46 2
TIGR_CMR|DET_0623 - symbol:DET_0623 "ribonucleotide reduc... 266 2.4e-44 4
TIGR_CMR|ECH_0459 - symbol:ECH_0459 "ribonucleoside-dipho... 290 6.2e-43 2
UNIPROTKB|H0YCY7 - symbol:RRM1 "Ribonucleoside-diphosphat... 460 6.4e-43 1
TIGR_CMR|CHY_0676 - symbol:CHY_0676 "ribonucleoside-dipho... 299 1.2e-39 3
TIGR_CMR|GSU_1871 - symbol:GSU_1871 "ribonucleoside-dipho... 260 7.6e-38 3
UNIPROTKB|P39452 - symbol:nrdE species:83333 "Escherichia... 407 6.2e-35 1
UNIPROTKB|P0A5W8 - symbol:nrdE "Ribonucleoside-diphosphat... 401 3.1e-34 1
UNIPROTKB|Q0C1X7 - symbol:HNE_1555 "Ribonucleoside-diphos... 201 2.5e-29 3
UNIPROTKB|O53767 - symbol:nrdZ "Ribonucleoside-diphosphat... 215 2.1e-28 3
TIGR_CMR|SPO_3194 - symbol:SPO_3194 "ribonucleoside-dipho... 180 3.9e-27 3
UNIPROTKB|E9PP77 - symbol:RRM1 "Ribonucleoside-diphosphat... 308 1.9e-26 1
TIGR_CMR|DET_0244 - symbol:DET_0244 "ribonucleotide reduc... 167 1.3e-25 4
TIGR_CMR|DET_0345 - symbol:DET_0345 "ribonucleotide reduc... 259 5.1e-22 2
UNIPROTKB|Q5LRJ1 - symbol:nrdJ "Ribonucleoside-diphosphat... 122 8.5e-10 2
TIGR_CMR|SPO_2136 - symbol:SPO_2136 "ribonucleoside-dipho... 122 8.5e-10 2
>TAIR|locus:2052469 [details] [associations]
symbol:RNR1 "ribonucleotide reductase 1" species:3702
"Arabidopsis thaliana" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA;ISS;IMP] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0046686 "response
to cadmium ion" evidence=IEP] [GO:0009202 "deoxyribonucleoside
triphosphate biosynthetic process" evidence=IMP] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0007010 "cytoskeleton organization"
evidence=RCA] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] [GO:0010498 "proteasomal protein catabolic process"
evidence=RCA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006260 EMBL:AC007019 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 GO:GO:0009202 EMBL:AF092841
EMBL:AY035080 EMBL:BT008573 IPI:IPI00525243 PIR:B84605 PIR:T51813
RefSeq:NP_179770.1 UniGene:At.115 ProteinModelPortal:Q9SJ20
SMR:Q9SJ20 STRING:Q9SJ20 PaxDb:Q9SJ20 PRIDE:Q9SJ20
EnsemblPlants:AT2G21790.1 GeneID:816715 KEGG:ath:AT2G21790
GeneFarm:2079 TAIR:At2g21790 HOGENOM:HOG000057035 InParanoid:Q9SJ20
OMA:PQARNSN PhylomeDB:Q9SJ20 ProtClustDB:PLN02437
Genevestigator:Q9SJ20 GermOnline:AT2G21790 TIGRFAMs:TIGR02506
Uniprot:Q9SJ20
Length = 816
Score = 3645 (1288.2 bits), Expect = 0., P = 0.
Identities = 682/816 (83%), Positives = 739/816 (90%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYVVKRDG+QE VHFDKITARLKKLSYGLS +HCDPVLV+QKVC GVYKGVTTSQLDEL
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
NHPDYASLAARI VSNLHKNTKKSFSETIKDM+ H N+RSGLK+PLIADDV
Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
++IIM+NAARLDSEII KTLERSYLLKVQG VVERPQHMLMRVAVGIHK
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DDIDS I+TYH+MSQRWFTHASPTLFNAGTPR QLSSCFLVCMKDDSIEGIY+TLKECA+
Sbjct: 181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHAD++EFL+LRKNHGKEEHRARDLFYALW+PDLFMERVQ+NG WSLFCPNEAPGLA
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
DCWG EFE LYTKYE+EGKAKKVVQAQ LW+EIL SQ+ETGTPYMLFKD+CN+KSNQQNL
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIKSSNLCTE+I+YTSPTETAVCNLASIALPR+VRE GVP++SHP KL GS SKNRYF
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DFEKLAEVT VT NLNKIIDVNYYPVETA+ SN+RHRPIGIGVQGLAD FILLGMPFDS
Sbjct: 481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQQLNKDIFETIYYHAL+ S+E+AAR GPYETY GSPVSKGILQPDMW V PSDRWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL
Sbjct: 601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
LHDLT+MGLW+P +KNK+I ++GS+ + +IP++LKAIY+TVWEIKQ+T+VDMA DRGCY
Sbjct: 661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIHMD+PNF KLTSLHF+ W +GLKTGMYYLRSRAAADAIKFTVDT++LKE P
Sbjct: 721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAMLKEKP 780
Query: 781 KVTD--------DDDAKMAQMVCSLTNREECMACGS 808
V + D++ K+AQMVCSLTN EEC+ACGS
Sbjct: 781 SVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>MGI|MGI:98180 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate
reductase complex" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=IPI] [GO:0051290 "protein
heterotetramerization" evidence=IPI] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 MGI:MGI:98180 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CH466531 GO:GO:0051290 GO:GO:0017076
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:K02927 EMBL:AK088043
EMBL:AK137075 EMBL:AK168586 EMBL:BC016450 IPI:IPI00315127
PIR:A24050 RefSeq:NP_033129.2 UniGene:Mm.197486 UniGene:Mm.415177
ProteinModelPortal:P07742 SMR:P07742 STRING:P07742
PhosphoSite:P07742 PaxDb:P07742 PRIDE:P07742
Ensembl:ENSMUST00000033283 GeneID:20133 KEGG:mmu:20133
InParanoid:Q91YM8 BindingDB:P07742 ChEMBL:CHEMBL3739 NextBio:297643
Bgee:P07742 CleanEx:MM_RRM1 Genevestigator:P07742
GermOnline:ENSMUSG00000030978 Uniprot:P07742
Length = 792
Score = 1661 (589.8 bits), Expect = 3.3e-292, Sum P(2) = 3.3e-292
Identities = 304/455 (66%), Positives = 368/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI+M N RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1169 (416.6 bits), Expect = 3.3e-292, Sum P(2) = 3.3e-292
Identities = 218/332 (65%), Positives = 264/332 (79%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DFEKLAEVT ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 461 YDFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFE 520
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S E+A GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 521 SPEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 581 WKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW+ +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 641 LLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 701 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 760
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
K +++ K A MVCSL NREEC+ CGS
Sbjct: 761 EKALKEEEEKERNTAAMVCSLENREECLMCGS 792
>UNIPROTKB|P23921 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS;NAS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0055086 "nucleobase-containing
small molecule metabolic process" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_111217
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829
GO:GO:0005524 GO:GO:0005654 GO:GO:0006260 DrugBank:DB01073
GO:GO:0051290 GO:GO:0015949 DrugBank:DB00441 DrugBank:DB00631
GO:GO:0009263 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
HOGENOM:HOG000057035 OMA:PQARNSN TIGRFAMs:TIGR02506 CTD:6240
HOVERGEN:HBG003447 OrthoDB:EOG4ZW59G EMBL:X59543 EMBL:X59617
EMBL:AF107045 EMBL:BC006498 EMBL:L10342 IPI:IPI00013871 PIR:S16680
RefSeq:NP_001024.1 UniGene:Hs.445705 PDB:2WGH PDB:3HNC PDB:3HND
PDB:3HNE PDB:3HNF PDBsum:2WGH PDBsum:3HNC PDBsum:3HND PDBsum:3HNE
PDBsum:3HNF ProteinModelPortal:P23921 SMR:P23921 DIP:DIP-24233N
IntAct:P23921 MINT:MINT-1406473 STRING:P23921 PhosphoSite:P23921
DMDM:132608 PaxDb:P23921 PeptideAtlas:P23921 PRIDE:P23921
DNASU:6240 Ensembl:ENST00000300738 GeneID:6240 KEGG:hsa:6240
UCSC:uc001lyw.4 GeneCards:GC11P004115 HGNC:HGNC:10451 HPA:CAB022093
MIM:180410 neXtProt:NX_P23921 PharmGKB:PA298 InParanoid:P23921
PhylomeDB:P23921 BindingDB:P23921 ChEMBL:CHEMBL1830 ChiTaRS:RRM1
DrugBank:DB01005 EvolutionaryTrace:P23921 GenomeRNAi:6240
NextBio:24233 ArrayExpress:P23921 Bgee:P23921 CleanEx:HS_RRM1
Genevestigator:P23921 GermOnline:ENSG00000167325 Uniprot:P23921
Length = 792
Score = 1661 (589.8 bits), Expect = 4.2e-292, Sum P(2) = 4.2e-292
Identities = 304/455 (66%), Positives = 368/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1168 (416.2 bits), Expect = 4.2e-292, Sum P(2) = 4.2e-292
Identities = 218/332 (65%), Positives = 266/332 (80%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 461 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 520
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 521 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 581 WKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 641 LLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 701 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 760
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
KV+ +++ K A MVCSL NR+EC+ CGS
Sbjct: 761 EKVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
Score = 38 (18.4 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNE 107
ASLA + V++ H K +E K + + N+
Sbjct: 447 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNK 479
>RGD|1592569 [details] [associations]
symbol:Rrm1 "ribonucleotide reductase M1" species:10116 "Rattus
norvegicus" [GO:0000278 "mitotic cell cycle" evidence=IEP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005635 "nuclear
envelope" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006206 "pyrimidine nucleobase metabolic process" evidence=IEP]
[GO:0008584 "male gonad development" evidence=IEP] [GO:0010212
"response to ionizing radiation" evidence=IEP] [GO:0021846 "cell
proliferation in forebrain" evidence=IEP] [GO:0042995 "cell
projection" evidence=IDA] [GO:0043025 "neuronal cell body"
evidence=IDA] [GO:0060041 "retina development in camera-type eye"
evidence=IEP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
RGD:1592569 GO:GO:0005524 GO:GO:0005737 GO:GO:0005635 GO:GO:0006260
GO:GO:0043025 GO:GO:0006206 EMBL:CH473956 GO:GO:0010212
GO:GO:0008584 GO:GO:0060041 GO:GO:0042995 GO:GO:0021846
GO:GO:0000278 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
CTD:6240 HOVERGEN:HBG003447 EMBL:BC085906 IPI:IPI00361151
RefSeq:NP_001013254.1 UniGene:Rn.162454 SMR:Q5U2Q5 GeneID:685579
KEGG:rno:685579 ChEMBL:CHEMBL5130 NextBio:729994
Genevestigator:Q5U2Q5 Uniprot:Q5U2Q5
Length = 792
Score = 1652 (586.6 bits), Expect = 2.9e-291, Sum P(2) = 2.9e-291
Identities = 302/455 (66%), Positives = 368/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
+I+M + RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LEIVMAHKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1169 (416.6 bits), Expect = 2.9e-291, Sum P(2) = 2.9e-291
Identities = 218/332 (65%), Positives = 264/332 (79%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DFEKLAEVT ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 461 YDFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFE 520
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 521 SPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 581 WKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW+ +KN+II +GS+Q IP+IPE+LK +YKTVWEI QKT++ MA +RG
Sbjct: 641 LLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGA 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 701 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 760
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
K +++ K A MVCSL NREEC+ CGS
Sbjct: 761 EKALKEEEEKERNTAAMVCSLENREECLMCGS 792
>UNIPROTKB|Q5R919 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9601 "Pongo abelii" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 CTD:6240 HOVERGEN:HBG003447 HSSP:P21524
EMBL:CR859577 RefSeq:NP_001126012.1 UniGene:Pab.9179
ProteinModelPortal:Q5R919 SMR:Q5R919 PRIDE:Q5R919 GeneID:100172956
KEGG:pon:100172956 InParanoid:Q5R919 Uniprot:Q5R919
Length = 792
Score = 1651 (586.2 bits), Expect = 6.1e-291, Sum P(2) = 6.1e-291
Identities = 302/455 (66%), Positives = 367/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK KK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKEAKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK S+LCTE+++YTS E AVCNLAS+AL YV
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1167 (415.9 bits), Expect = 6.1e-291, Sum P(2) = 6.1e-291
Identities = 218/332 (65%), Positives = 266/332 (80%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 461 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 520
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 521 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 581 WKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 641 LLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 701 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 760
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
KV+ +++ K A MVCSL NR+EC+ CGS
Sbjct: 761 EKVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
Score = 38 (18.4 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNE 107
ASLA + V++ H K +E K + + N+
Sbjct: 447 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNK 479
>UNIPROTKB|F1MSF1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:DAAA02040985 EMBL:DAAA02040986 IPI:IPI00884866
UniGene:Bt.12465 Ensembl:ENSBTAT00000017428 Uniprot:F1MSF1
Length = 791
Score = 1657 (588.4 bits), Expect = 1.6e-290, Sum P(2) = 1.6e-290
Identities = 302/455 (66%), Positives = 369/455 (81%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FS+ ++D++N+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLFNYINPHNGKHSPMVAKST 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY +YEKEG+ +KV++AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYERYEKEGRVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1157 (412.3 bits), Expect = 1.6e-290, Sum P(2) = 1.6e-290
Identities = 216/331 (65%), Positives = 264/331 (79%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF KLAEVT ++ NLNKIID+NYYPV A SN HRPIGIGVQGLAD FIL+ PF+
Sbjct: 461 YDFTKLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFE 520
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 521 SPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K GVRNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 581 WNLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW+ +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 641 LLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 701 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 760
Query: 780 PKVTDDDDAKM--AQMVCSLTNREECMACGS 808
KV+ +++ + A MVCSL NR+EC+ CGS
Sbjct: 761 EKVSKEEEKERNTAAMVCSLENRDECLMCGS 791
>ZFIN|ZDB-GENE-990415-247 [details] [associations]
symbol:rrm1 "ribonucleotide reductase M1
polypeptide" species:7955 "Danio rerio" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
ZFIN:ZDB-GENE-990415-247 GO:GO:0005524 GO:GO:0006260 GO:GO:0009263
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:U57964 IPI:IPI00482388 RefSeq:NP_571530.1
UniGene:Dr.33356 ProteinModelPortal:P79732 SMR:P79732 STRING:P79732
PRIDE:P79732 GeneID:30740 KEGG:dre:30740 CTD:6240
HOVERGEN:HBG003447 InParanoid:P79732 OrthoDB:EOG4ZW59G
NextBio:20807088 ArrayExpress:P79732 Uniprot:P79732
Length = 794
Score = 1644 (583.8 bits), Expect = 4.3e-290, Sum P(2) = 4.3e-290
Identities = 303/455 (66%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG QE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FSE ++D+YN+ N + +P+I+ +
Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKETKKVFSEVMEDLYNYVNPLNSRHSPMISKET 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DI +AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATG YI GTNG SNG+VPMLRV N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIF+FL+L+KN GKEE RARDLFYALW+PDLFM+RV++NG WSL CPN+ PGL
Sbjct: 301 LEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+CWG EFE+LY KYE+EG+AK+VV+AQ LW+ I++SQ ETGTPYML+KD CN+KSN+QNL
Sbjct: 361 ECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++YTS E AVCNLASIAL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYV 455
Score = 1166 (415.5 bits), Expect = 4.3e-290, Sum P(2) = 4.3e-290
Identities = 219/339 (64%), Positives = 265/339 (78%)
Query: 475 SKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILL 534
+ R FDF+KLA VT ++ +NLNKIID+NYYPV+ A SN RHRPIGIGVQGLAD FIL+
Sbjct: 456 TSERTFDFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILM 515
Query: 535 GMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNP 594
PF+STEAQ LN IFETIYY AL +S E+AA GPY+TY G PVSKGILQ DMW P
Sbjct: 516 RFPFESTEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTP 575
Query: 595 SDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV 654
+D WDW L++ I+ +GVRNSLL+APMPTAST+QILGNNE EPYTSNIY RRVLSGEF
Sbjct: 576 TDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQ 635
Query: 655 VVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMA 714
+VN HLL DLTE GLW+ +KN+II +GS+Q IP IP++LK +YKTVWEI QKT++ MA
Sbjct: 636 IVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMA 695
Query: 715 VDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
DRG YID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR++ A+ I+FT++
Sbjct: 696 ADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKE 755
Query: 775 VLKENPKVT--DDDDAK---MAQMVCSLTNREECMACGS 808
LKE K T +D++ K A MVCSL NR EC+ CGS
Sbjct: 756 KLKETQKTTSSEDEETKERNKAAMVCSLENRHECLMCGS 794
>UNIPROTKB|E2R8P1 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9615 "Canis lupus familiaris" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 OMA:PQARNSN TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 CTD:6240 EMBL:AAEX03012836
RefSeq:XP_534027.2 Ensembl:ENSCAFT00000009652 GeneID:476823
KEGG:cfa:476823 NextBio:20852423 Uniprot:E2R8P1
Length = 792
Score = 1653 (586.9 bits), Expect = 5.5e-290, Sum P(2) = 5.5e-290
Identities = 302/455 (66%), Positives = 368/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVAKST 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIH+
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHE 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 455
Score = 1156 (412.0 bits), Expect = 5.5e-290, Sum P(2) = 5.5e-290
Identities = 216/332 (65%), Positives = 264/332 (79%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KLAEVT ++ NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 461 YDFKKLAEVTKVIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 520
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A GPYETY GSPVS+GILQ DMW V P++ WD
Sbjct: 521 SPEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTELWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K GVRNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 581 WKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW+ +KN+II +GS+Q IP+IP++LK +YKTVWEI QK ++ MA +RG
Sbjct: 641 LLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGA 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 701 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 760
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
K T +++ K A MVCSL NREEC+ CGS
Sbjct: 761 EKATKEEEEKERNTAAMVCSLENREECLMCGS 792
Score = 38 (18.4 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNE 107
ASLA + V++ H K +E K + + N+
Sbjct: 447 ASLALNMYVTSEHTYDFKKLAEVTKVIVRNLNK 479
>POMBASE|SPAC1F7.05 [details] [associations]
symbol:cdc22 "ribonucleoside reductase large subunit
Cdc22" species:4896 "Schizosaccharomyces pombe" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS;IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0006213 "pyrimidine nucleoside metabolic
process" evidence=IC] [GO:0007090 "regulation of S phase of mitotic
cell cycle" evidence=IMP] [GO:0009212 "pyrimidine
deoxyribonucleoside triphosphate biosynthetic process" evidence=IC]
[GO:0009216 "purine deoxyribonucleoside triphosphate biosynthetic
process" evidence=IC] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=ISS] [GO:0042278 "purine nucleoside metabolic
process" evidence=IC] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326
PomBase:SPAC1F7.05 Pfam:PF03477 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006260 GO:GO:0007090
GO:GO:0090329 GO:GO:0006213 GO:GO:0009263 KO:K10807 GO:GO:0042278
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035 OMA:PQARNSN
TIGRFAMs:TIGR02506 OrthoDB:EOG480N4T EMBL:X65116 PIR:S34807
PIR:S62577 RefSeq:NP_594491.1 ProteinModelPortal:P36602 SMR:P36602
IntAct:P36602 STRING:P36602 PRIDE:P36602 EnsemblFungi:SPAC1F7.05.1
GeneID:2541695 KEGG:spo:SPAC1F7.05 NextBio:20802788 GO:GO:0009216
GO:GO:0009212 Uniprot:P36602
Length = 811
Score = 1651 (586.2 bits), Expect = 8.0e-283, Sum P(3) = 8.0e-283
Identities = 295/457 (64%), Positives = 370/457 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V KRDG+QE V FDKITAR+ +L YGL +H DPV ++QKV +GVY GVTT +LD L
Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK T+K FS ++ ++++ N ++ AP+I+D +
Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKI 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YDI+MK+ LDS II KTLERSYLL++ GKV ERPQHM+MRVAVGIH
Sbjct: 121 YDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DI++AI+TY++MSQR+FTHASPTLFNAGTPR QLSSCFLV MKDDSIEGIYDTLK CA+
Sbjct: 181 EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+++HNIRATGSYI GTNGTSNGIVPM+RV+N+TARYVDQGG KR GAFA Y
Sbjct: 241 ISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHAD+ +FL+LRK HG E+ RAR++FYALW+PDLFM+RV+ N W+ FCPNEAPGLA
Sbjct: 301 LEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG EF LY KYEKE + ++ + AQ +W+ IL+SQ+ETG P+ML+KD+CN+KSNQ+N+
Sbjct: 361 DVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNV 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVRE 457
GTI+ SNLCTE+++Y+SP E AVCNLAS+ALP ++++
Sbjct: 421 GTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKD 457
Score = 1068 (381.0 bits), Expect = 8.0e-283, Sum P(3) = 8.0e-283
Identities = 197/314 (62%), Positives = 249/314 (79%)
Query: 476 KNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
K+ ++F+KL +V +VT NLNKIIDVNYYPV ARRSN+RHRP+G+GVQGLAD F L
Sbjct: 456 KDGKYNFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALR 515
Query: 536 MPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS 595
+PF+S A++LN IFETIY+ AL S EIA EG YE+Y GSP S+GILQ DMW VNP+
Sbjct: 516 LPFESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPT 575
Query: 596 DRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
D WDW L++ I+K+G+RNSLLVAPMPTASTSQILG NECFEPYTSN+Y RRVLSGEF +
Sbjct: 576 DLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQI 635
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAV 715
VN LL DL E LW+ +KNK++ DGS+Q IP+IP++LK +YKTVWEI QKT++D A
Sbjct: 636 VNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAA 695
Query: 716 DRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +ID SQSLNIH+ P++GK+TS+HF+ W +GLKTGMYYLR+ AA+ AIKFTVD
Sbjct: 696 DRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPVA 755
Query: 776 LKENPKVTDDDDAK 789
L+ + +++++ K
Sbjct: 756 LRARNEESNEENKK 769
Score = 40 (19.1 bits), Expect = 8.0e-283, Sum P(3) = 8.0e-283
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 793 MVCSLTNREECMACGS 808
+ CS+ N E C C +
Sbjct: 796 LACSIKNPEACEMCSA 811
>ASPGD|ASPL0000074083 [details] [associations]
symbol:AN4380 species:162425 "Emericella nidulans"
[GO:0043173 "nucleotide salvage" evidence=RCA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;RCA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0090329 "regulation of DNA-dependent DNA replication"
evidence=IEA] [GO:0007090 "regulation of S phase of mitotic cell
cycle" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0006260
EMBL:BN001303 EMBL:AACD01000076 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
OrthoDB:EOG480N4T RefSeq:XP_661984.1 ProteinModelPortal:Q5B500
SMR:Q5B500 STRING:Q5B500 EnsemblFungi:CADANIAT00006078
GeneID:2872173 KEGG:ani:AN4380.2 Uniprot:Q5B500
Length = 865
Score = 1640 (582.4 bits), Expect = 1.7e-280, Sum P(3) = 1.7e-280
Identities = 299/449 (66%), Positives = 368/449 (81%)
Query: 7 DGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXX 66
DG++E V FDKITAR+ +L YGL EH D ++QKV +GVY+GVTT +LD L
Sbjct: 21 DGRKERVQFDKITARVSRLCYGLDPEHVDAAAITQKVISGVYQGVTTVELDNLAAETAAY 80
Query: 67 XXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMK 126
HPDYA LAARI VSNLHK TKK FS I D+Y++ N ++ AP+I+ + Y+I+MK
Sbjct: 81 MTVTHPDYAILAARIAVSNLHKQTKKQFSLVISDLYHYVNPKNKKPAPMISKETYEIVMK 140
Query: 127 NAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSA 186
+A L+S I+ KTLERSYLL++ GK+ ERPQH+LMRVAVGIH +DI+ A
Sbjct: 141 HAEELNSAIVYDRDFNYNFFGFKTLERSYLLRLDGKIAERPQHLLMRVAVGIHGNDIERA 200
Query: 187 IKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAG 246
I+TY++MSQ++FTHASPTLFNAGTP+ QL+SCFLV MK+DSI+GIYDTLK CA+ISK+AG
Sbjct: 201 IETYNLMSQKYFTHASPTLFNAGTPQPQLASCFLVDMKEDSIDGIYDTLKTCAMISKTAG 260
Query: 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHA 306
GIG++VH IRATGSYI GTNG+SNGIVPMLRVFN+TARYVDQGG KR GAFA+YLEPWHA
Sbjct: 261 GIGLNVHRIRATGSYIAGTNGSSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIYLEPWHA 320
Query: 307 DIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTE 366
D+FEFLDLRKNHGKEE RARDLFYALW PDLFM+RV++NG W+LFCPNEAPGLAD +G E
Sbjct: 321 DVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFCPNEAPGLADVYGDE 380
Query: 367 FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSS 426
F+ LY +YEKEG+ ++ ++AQ LW+ IL++Q ETG P+ML+KD CNKKSNQ+NLGTI+SS
Sbjct: 381 FDALYEQYEKEGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTIRSS 440
Query: 427 NLCTEVIQYTSPTETAVCNLASIALPRYV 455
NLCTE+I+YT+P E AVCNLAS+ALP +V
Sbjct: 441 NLCTEIIEYTAPDEVAVCNLASLALPTFV 469
Score = 1045 (372.9 bits), Expect = 1.7e-280, Sum P(3) = 1.7e-280
Identities = 201/327 (61%), Positives = 248/327 (75%)
Query: 466 PSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQ 525
P+ + SRG +DF KL EV ++ NLNKIID+NYYPV A++SN RHRPI +GV
Sbjct: 466 PTFVDASRGE----YDFGKLHEVVQVLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVN 521
Query: 526 GLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGIL 585
GLAD F+ L +PFDS EA+QLN IFETIY+ AL SS +A +GPYE+Y GSPVS+GIL
Sbjct: 522 GLADAFLALRLPFDSAEAKQLNIQIFETIYHAALTASSNLAKEDGPYESYEGSPVSQGIL 581
Query: 586 QPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYS 645
Q DMW P+D WDW L+ I++ GVRNSLLVAPMPTASTSQILG NECFEPYTSNIYS
Sbjct: 582 QYDMWERTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYS 641
Query: 646 RRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEI 705
RRVL+GEF VVN LL DL ++GLWS +KN+II + GSVQ IP IP+++KA+YKTVWEI
Sbjct: 642 RRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEI 701
Query: 706 KQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAAD 765
Q+ +++MA DRG YID SQSLNIH+ +P GK+TS+HF W GLKTGMYYLR+ AA+
Sbjct: 702 SQRRILEMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASA 761
Query: 766 AIKFTVDTSVLKENPKVTDDDDAKMAQ 792
I+FTVD +E KV D + A+ ++
Sbjct: 762 PIQFTVD----QEQLKVADTNVARTSK 784
Score = 52 (23.4 bits), Expect = 1.7e-280, Sum P(3) = 1.7e-280
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 771 VDTSVLKENPKVTDDDDAKM-AQMV--CSLTNREECMAC 806
VDTS E K + +A + +Q V CS+ N+E C+ C
Sbjct: 827 VDTS--DEEKKEGEPSEADIYSQKVLQCSIENKEACIMC 863
Score = 37 (18.1 bits), Expect = 3.0e-170, Sum P(2) = 3.0e-170
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 637 EPYTSNIYSRRVL 649
EP ++IYS++VL
Sbjct: 838 EPSEADIYSQKVL 850
>UNIPROTKB|Q9UW15 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
chain" species:367110 "Neurospora crassa OR74A" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AABX02000008 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 EMBL:AF171697 EMBL:AL390092 PIR:T43711
RefSeq:XP_956818.1 UniGene:Ncr.20426 ProteinModelPortal:Q9UW15
SMR:Q9UW15 STRING:Q9UW15 EnsemblFungi:EFNCRT00000002608
GeneID:3872956 KEGG:ncr:NCU03539 OMA:ETIYHAS OrthoDB:EOG480N4T
Uniprot:Q9UW15
Length = 929
Score = 1651 (586.2 bits), Expect = 6.2e-280, Sum P(2) = 6.2e-280
Identities = 303/455 (66%), Positives = 366/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV KRDG+QE V FDKITAR+ +L YGL + H DPV ++QKV +GVY GVTT+QLD+L
Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK +S I ++YN+ N R+G +P+IA DV
Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPMIAKDV 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+ +M++ DS I+ KTLERSYLLK+ G++ ERPQHM+MRVAVGI
Sbjct: 121 YECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DD++ I+TY++MS + FTHASPTLFNAGTP+ QLSSCFLV MK+DSIEGIYDTLK CA+
Sbjct: 181 DDVERVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+++H IRATGSYI GTNGTSNGIVPMLRVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHAD+FEFLDLRKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+L CP+E PGLA
Sbjct: 301 LEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D +G EFE LY KYEKEGK +K V+AQ LW+ IL++Q ETG P+ML+KD CN+KSNQ+NL
Sbjct: 361 DVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTI+SSNLCTE+I+Y++P E AVCNLAS+AL ++
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFI 455
Score = 1063 (379.3 bits), Expect = 6.2e-280, Sum P(2) = 6.2e-280
Identities = 201/310 (64%), Positives = 239/310 (77%)
Query: 476 KNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
+N +DF+KL EVT +V NLNKIID+N+YPV+ A SN+RHRPIG+GVQGLAD F+ L
Sbjct: 458 ENASYDFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALR 517
Query: 536 MPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS 595
MPFDS A +LN IFETIY+ AL S ++A +GPY TY GSPVS+GILQ DMW V P+
Sbjct: 518 MPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPT 577
Query: 596 DRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
+ WDW L+ I K GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY RRVL+GEF V
Sbjct: 578 NLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQV 637
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAV 715
VN LL DL EMGLWS +KN+II + GS+Q I IP ++KA+YKTVWEI Q+T+V MA
Sbjct: 638 VNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAA 697
Query: 716 DRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +ID SQSLNIHM +P GK+TS+HF W GLKTGMYYLR++AAA I+FTVD
Sbjct: 698 DRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEA 757
Query: 776 LKENPKVTDD 785
L+ TDD
Sbjct: 758 LR----ATDD 763
>FB|FBgn0011703 [details] [associations]
symbol:RnrL "Ribonucleoside diphosphate reductase large
subunit" species:7227 "Drosophila melanogaster" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS;NAS] [GO:0006260
"DNA replication" evidence=IEA;NAS] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006919 "activation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0042246 "tissue regeneration" evidence=IMP] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:AE014134
GO:GO:0006260 GO:GO:0006919 GO:GO:0042246 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OMA:YKYGVKT EMBL:AF132143
EMBL:AY119149 EMBL:U09369 RefSeq:NP_477027.1 UniGene:Dm.3216
ProteinModelPortal:P48591 SMR:P48591 DIP:DIP-19582N
MINT:MINT-829510 STRING:P48591 PaxDb:P48591
EnsemblMetazoa:FBtr0080059 GeneID:34392 KEGG:dme:Dmel_CG5371
CTD:34392 FlyBase:FBgn0011703 InParanoid:P48591 OrthoDB:EOG4XKSNZ
PhylomeDB:P48591 GenomeRNAi:34392 NextBio:788275 Bgee:P48591
GermOnline:CG5371 Uniprot:P48591
Length = 812
Score = 1608 (571.1 bits), Expect = 1.5e-278, Sum P(2) = 1.5e-278
Identities = 290/455 (63%), Positives = 370/455 (81%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
+YV+KRDG+QE VHFDKIT+R++KL Y L+++ DPV ++ +V G+Y GVTT +LD L
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNLA 71
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
NHPDYA LAARI VSNLHK TKK+FS+ +D+YNH N+ + K PL+++
Sbjct: 72 AEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEFH 131
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+++ KNA RL+S II KTLERSYLLK GK+ ERPQHMLMRVA+GIH
Sbjct: 132 YNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHG 191
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+A++TY+++S+R+FTHASPTLF A T R QLSSCFL+ M DSIEGI+ ++++CA+
Sbjct: 192 EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAM 251
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG++VH IRA G+ I GTNGTSNG+VPMLRVFN+ ARYVDQGGGKR GAFA+Y
Sbjct: 252 ISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIY 311
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+D+FEFL+L+KN GKEE+RARDLFYALW+PDLFM+RV++NG WSL CP++ PGL
Sbjct: 312 LEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLH 371
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG EFE+LY KYE+EG+A + V+AQ+LWF I+++Q+ETG PYMLFKD CN+KSNQQN+
Sbjct: 372 DVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNV 431
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++Y++P E AVCNLASIAL +V
Sbjct: 432 GTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFV 466
Score = 1093 (389.8 bits), Expect = 1.5e-278, Sum P(2) = 1.5e-278
Identities = 210/341 (61%), Positives = 261/341 (76%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KL EVT IVT+NLNKIID+NYYP+ AR+SNLRHRP+GIG+QG AD IL+ P++
Sbjct: 472 YDFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYE 531
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EA LN+ IFETIYY AL S E+A EGPYETY GSPVSKGILQ DMW P++ WD
Sbjct: 532 SEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWD 591
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I +GVRNSLLVAPMPTAST+QI+GNNE FEPYT+NIY+RRVLSGEF VVN H
Sbjct: 592 WQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHH 651
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE+ LW +KN+II GS+Q I IP +++ +YKTVWEI K+ + MA DRG
Sbjct: 652 LLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGA 711
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVD-----TS 774
+ID SQS NIH+ +PN+GKLTS+HF++W GLKTGMYYLR++ AA+AI+FTV+ S
Sbjct: 712 FIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVS 771
Query: 775 VLKEN------P-KVTDDDDAKMAQMVCSLTNREECMACGS 808
+ +N P K +D + KMA MVCSL N++ CM+CGS
Sbjct: 772 MNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSCGS 812
>CGD|CAL0001524 [details] [associations]
symbol:RNR1 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;NAS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0007090 "regulation of S phase of
mitotic cell cycle" evidence=IEA] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 2621 (927.7 bits), Expect = 2.0e-274, Sum P(2) = 2.0e-274
Identities = 480/775 (61%), Positives = 610/775 (78%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV KRDG++E V FDKITAR+++L YGL+ H +PV ++QKV +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK T K +S+ KD+Y + N ++GL +P+I+ +
Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKET 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YDIIM++ L+S I+ KTLERSYLL++ GKV ERPQH++MRVAVGIH
Sbjct: 121 YDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DI I+TY++MSQR+FTH SP LFNAGTPR Q+SSCFL+ MKDDSIEGIYDTLK CA+
Sbjct: 181 NDIPRVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG+ +HNIR+TG+YI GTNGTSNGI+PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+DIF+F+D+RKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF PNEAPGLA
Sbjct: 301 LEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D +G EFE LYTKYEKE + ++ ++AQ LW+ IL +Q ETGTP+ML+KD+CN KSNQ+NL
Sbjct: 361 DVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
G IKSSNLC E+++Y++P E AVCNLASIALP +V K+ ++
Sbjct: 421 GIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEN----------------DEKSTWY 464
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL +VT +VT NLN++ID N+YPV A RSN+RHRPI +GVQGLAD F+ L +PFDS
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA++LN IFETIY+ A+ S E+A EG YETY GSP S+G+LQ D+W P++ WDW
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDW 584
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+ ++K+G+RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +VN +L
Sbjct: 585 DTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYL 644
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W+ +K+ II ++GS+Q +P IP+E+KA+YKTVWEI QK ++DMA DR +
Sbjct: 645 LKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAF 704
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID SQSLNIH+ P GKLTS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 705 IDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 759
Score = 41 (19.5 bits), Expect = 2.0e-274, Sum P(2) = 2.0e-274
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 785 DDDAKMAQMV-CSLTNREECMAC 806
++D A+++ C++ N E C C
Sbjct: 830 ENDIYSAKVIACAIDNPESCTMC 852
>UNIPROTKB|Q5A0N3 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] [GO:0009267 "cellular response
to starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 CGD:CAL0001524 Pfam:PF03477
GO:GO:0005524 GO:GO:0071216 GO:GO:0036180 GO:GO:0006260
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000088 EMBL:AACQ01000087
KO:K10807 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
RefSeq:XP_715255.1 RefSeq:XP_715320.1 ProteinModelPortal:Q5A0N3
SMR:Q5A0N3 STRING:Q5A0N3 GeneID:3642989 GeneID:3643046
KEGG:cal:CaO19.13201 KEGG:cal:CaO19.5779 Uniprot:Q5A0N3
Length = 854
Score = 2621 (927.7 bits), Expect = 2.0e-274, Sum P(2) = 2.0e-274
Identities = 480/775 (61%), Positives = 610/775 (78%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV KRDG++E V FDKITAR+++L YGL+ H +PV ++QKV +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVRFDKITARVQRLCYGLNPNHVEPVAITQKVISGVYQGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK T K +S+ KD+Y + N ++GL +P+I+ +
Sbjct: 61 AEIAATMTTIHPDYAVLAARIAVSNLHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKET 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YDIIM++ L+S I+ KTLERSYLL++ GKV ERPQH++MRVAVGIH
Sbjct: 121 YDIIMEHEDELNSAIVYDRDFNYNYFGFKTLERSYLLRINGKVAERPQHLIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DI I+TY++MSQR+FTH SP LFNAGTPR Q+SSCFL+ MKDDSIEGIYDTLK CA+
Sbjct: 181 NDIPRVIETYNLMSQRFFTHGSPCLFNAGTPRPQMSSCFLLAMKDDSIEGIYDTLKSCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG+ +HNIR+TG+YI GTNGTSNGI+PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLHIHNIRSTGAYIAGTNGTSNGIIPMVRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+DIF+F+D+RKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF PNEAPGLA
Sbjct: 301 LEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFSPNEAPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D +G EFE LYTKYEKE + ++ ++AQ LW+ IL +Q ETGTP+ML+KD+CN KSNQ+NL
Sbjct: 361 DVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCNNKSNQKNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
G IKSSNLC E+++Y++P E AVCNLASIALP +V K+ ++
Sbjct: 421 GIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEN----------------DEKSTWY 464
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL +VT +VT NLN++ID N+YPV A RSN+RHRPI +GVQGLAD F+ L +PFDS
Sbjct: 465 NFDKLHQVTKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDS 524
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA++LN IFETIY+ A+ S E+A EG YETY GSP S+G+LQ D+W P++ WDW
Sbjct: 525 QEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDW 584
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+ ++K+G+RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +VN +L
Sbjct: 585 DTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYL 644
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W+ +K+ II ++GS+Q +P IP+E+KA+YKTVWEI QK ++DMA DR +
Sbjct: 645 LKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAF 704
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID SQSLNIH+ P GKLTS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 705 IDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 759
Score = 41 (19.5 bits), Expect = 2.0e-274, Sum P(2) = 2.0e-274
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 785 DDDAKMAQMV-CSLTNREECMAC 806
++D A+++ C++ N E C C
Sbjct: 830 ENDIYSAKVIACAIDNPESCTMC 852
>SGD|S000000872 [details] [associations]
symbol:RNR1 "Major isoform of large subunit of
ribonucleotide-diphosphate reductase" species:4932 "Saccharomyces
cerevisiae" [GO:0000166 "nucleotide binding" evidence=IEA;IDA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IMP;IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 SGD:S000000872
Pfam:PF03477 GO:GO:0005524 GO:GO:0000166 GO:GO:0006260
EMBL:BK006939 EMBL:U18813 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 OMA:ETIYHAS
OrthoDB:EOG480N4T EMBL:X69216 EMBL:X69217 PIR:S50573
RefSeq:NP_010993.1 PDB:1ZYZ PDB:1ZZD PDB:2CVS PDB:2CVT PDB:2CVU
PDB:2CVV PDB:2CVW PDB:2CVX PDB:2CVY PDB:2EUD PDB:2ZLF PDB:2ZLG
PDB:3K8T PDB:3PAW PDB:3RSR PDB:3S87 PDB:3S8A PDB:3S8B PDB:3S8C
PDB:3TB9 PDB:3TBA PDBsum:1ZYZ PDBsum:1ZZD PDBsum:2CVS PDBsum:2CVT
PDBsum:2CVU PDBsum:2CVV PDBsum:2CVW PDBsum:2CVX PDBsum:2CVY
PDBsum:2EUD PDBsum:2ZLF PDBsum:2ZLG PDBsum:3K8T PDBsum:3PAW
PDBsum:3RSR PDBsum:3S87 PDBsum:3S8A PDBsum:3S8B PDBsum:3S8C
PDBsum:3TB9 PDBsum:3TBA ProteinModelPortal:P21524 SMR:P21524
DIP:DIP-6299N IntAct:P21524 MINT:MINT-680321 STRING:P21524
PaxDb:P21524 PeptideAtlas:P21524 PRIDE:P21524 EnsemblFungi:YER070W
GeneID:856801 KEGG:sce:YER070W CYGD:YER070w
EvolutionaryTrace:P21524 NextBio:983047 Genevestigator:P21524
GermOnline:YER070W Uniprot:P21524
Length = 888
Score = 2606 (922.4 bits), Expect = 1.6e-272, Sum P(2) = 1.6e-272
Identities = 477/790 (60%), Positives = 613/790 (77%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV KRDG++E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA+LAARI +SNLHK T K FS+ ++D+Y + N +G AP+I+DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+I+M+N +L+S I+ KTLERSYLL++ G+V ERPQH++MRVA+GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI++A++TY++MS ++FTHASPTLFNAGTP+ Q+SSCFLV MK+DSIEGIYDTLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHADIF+F+D+RKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P APGL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
DC+G EFE LYT+YEKEG+ K ++AQ LW+ IL++Q ETGTP++++KD CN+KSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRGK-TIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
G IKSSNLC E+++Y++P ETAVCNLAS+ALP ++ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL +PFDS
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA+ LN IFETIY+ ++ S E+A ++GPYET+ GSP S+GILQ DMW P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W +K +I +GS+Q +P +P+ELK +YKTVWEI QKT+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKE-N 779
ID S SLN+ + P GKLTS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D + +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQAT 765
Query: 780 PKVTDDDDAK 789
V D + K
Sbjct: 766 ENVADISNLK 775
Score = 38 (18.4 bits), Expect = 1.6e-272, Sum P(2) = 1.6e-272
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 777 KENPKVTDDD---DAKMAQMV-CSLTNREECMAC 806
K P V D++ D ++++ C++ N E C C
Sbjct: 853 KAAPIVDDEETEFDIYNSKVIACAIDNPEACEMC 886
>WB|WBGene00004391 [details] [associations]
symbol:rnr-1 species:6239 "Caenorhabditis elegans"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040017 "positive regulation of
locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006260 GO:GO:0040011 GO:GO:0040017
GO:GO:0040035 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
PIR:S28302 RefSeq:NP_499039.1 ProteinModelPortal:Q03604 SMR:Q03604
DIP:DIP-26889N IntAct:Q03604 MINT:MINT-1080458 STRING:Q03604
PaxDb:Q03604 PRIDE:Q03604 EnsemblMetazoa:T23G5.1.1
EnsemblMetazoa:T23G5.1.2 EnsemblMetazoa:T23G5.1.3 GeneID:176301
KEGG:cel:CELE_T23G5.1 UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1572 (558.4 bits), Expect = 1.6e-272, Sum P(2) = 1.6e-272
Identities = 292/454 (64%), Positives = 359/454 (79%)
Query: 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXX 61
YVVKRDG++E VHFDKIT+R++KLSYGL+++ DPV V+ KV +G+YKGVTT +LD L
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 XXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVY 121
HP+YA LAARI VSNLHK T K FSE +K ++ ++ +G AP+I+D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 DIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKD 181
II KNA +L+S I+ KTLERSYLLK+ ++VERPQ MLMRV++GIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAII 241
DI SAI+TY++MS+R+ THASPTLFN+GT R Q+SSCFL+ M +DSI GIYDTLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYL 301
SKSAGGIG++VH IRATGS I GTNGTSNG++PMLRV+N+TARYVDQGG KR GAFA+YL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLAD 361
EPWHADIFEF+ LRKN G EE RARDLF ALW+PDLFM+RV+ + WSL CP E PGL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 CWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG 421
CWG EFE LY KYE EG+ +K V+A+ LW I+ +QIETG PY+ +KD N+KSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
TIK SNLCTE+I+Y++P E AVCNLASIAL RYV
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYV 461
Score = 1072 (382.4 bits), Expect = 1.6e-272, Sum P(2) = 1.6e-272
Identities = 201/327 (61%), Positives = 252/327 (77%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
FDF KLAEVT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+ PF
Sbjct: 467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFT 526
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EA+ LNK IFETIYY AL S E+A GPY TY GSPVSKG LQ DMWGV P+D+ D
Sbjct: 527 SAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCD 586
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W LR I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIYSRRVLSG+F +VN H
Sbjct: 587 WATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPH 646
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
+L DL E GLW+ +KN++I ++GS+Q I IP ++K +Y+TVWEI QK +++MA DRG
Sbjct: 647 MLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGA 706
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
YID SQSLNIHM +P++ +TS+HF+ W +GLKTGMYYLR++ A +A++FTVD + LK N
Sbjct: 707 YIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTN 766
Query: 780 PKVTDDDDAKMAQMVCSLTNREECMAC 806
+ + A +A+ + E C+ C
Sbjct: 767 QQA--ETPATVAE-----SQDEGCLMC 786
>UNIPROTKB|Q03604 [details] [associations]
symbol:rnr-1 "Ribonucleoside-diphosphate reductase large
subunit" species:6239 "Caenorhabditis elegans" [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0006260
GO:GO:0040011 GO:GO:0040017 GO:GO:0040035 GO:GO:0009263 KO:K10807
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 EMBL:Z19158 HOGENOM:HOG000057035
TIGRFAMs:TIGR02506 PIR:S28302 RefSeq:NP_499039.1
ProteinModelPortal:Q03604 SMR:Q03604 DIP:DIP-26889N IntAct:Q03604
MINT:MINT-1080458 STRING:Q03604 PaxDb:Q03604 PRIDE:Q03604
EnsemblMetazoa:T23G5.1.1 EnsemblMetazoa:T23G5.1.2
EnsemblMetazoa:T23G5.1.3 GeneID:176301 KEGG:cel:CELE_T23G5.1
UCSC:T23G5.1.2 CTD:176301 WormBase:T23G5.1
GeneTree:ENSGT00390000001372 InParanoid:Q03604 OMA:YKYGVKT
NextBio:891992 Uniprot:Q03604
Length = 788
Score = 1572 (558.4 bits), Expect = 1.6e-272, Sum P(2) = 1.6e-272
Identities = 292/454 (64%), Positives = 359/454 (79%)
Query: 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXX 61
YVVKRDG++E VHFDKIT+R++KLSYGL+++ DPV V+ KV +G+YKGVTT +LD L
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 XXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVY 121
HP+YA LAARI VSNLHK T K FSE +K ++ ++ +G AP+I+D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 DIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKD 181
II KNA +L+S I+ KTLERSYLLK+ ++VERPQ MLMRV++GIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAII 241
DI SAI+TY++MS+R+ THASPTLFN+GT R Q+SSCFL+ M +DSI GIYDTLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYL 301
SKSAGGIG++VH IRATGS I GTNGTSNG++PMLRV+N+TARYVDQGG KR GAFA+YL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLAD 361
EPWHADIFEF+ LRKN G EE RARDLF ALW+PDLFM+RV+ + WSL CP E PGL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 CWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG 421
CWG EFE LY KYE EG+ +K V+A+ LW I+ +QIETG PY+ +KD N+KSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
TIK SNLCTE+I+Y++P E AVCNLASIAL RYV
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYV 461
Score = 1072 (382.4 bits), Expect = 1.6e-272, Sum P(2) = 1.6e-272
Identities = 201/327 (61%), Positives = 252/327 (77%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
FDF KLAEVT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+ PF
Sbjct: 467 FDFVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFT 526
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EA+ LNK IFETIYY AL S E+A GPY TY GSPVSKG LQ DMWGV P+D+ D
Sbjct: 527 SAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCD 586
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W LR I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIYSRRVLSG+F +VN H
Sbjct: 587 WATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPH 646
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
+L DL E GLW+ +KN++I ++GS+Q I IP ++K +Y+TVWEI QK +++MA DRG
Sbjct: 647 MLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGA 706
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
YID SQSLNIHM +P++ +TS+HF+ W +GLKTGMYYLR++ A +A++FTVD + LK N
Sbjct: 707 YIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTN 766
Query: 780 PKVTDDDDAKMAQMVCSLTNREECMAC 806
+ + A +A+ + E C+ C
Sbjct: 767 QQA--ETPATVAE-----SQDEGCLMC 786
>DICTYBASE|DDB_G0284071 [details] [associations]
symbol:rnrA "ribonucleoside-diphosphate reductase"
species:44689 "Dictyostelium discoideum" [GO:0005515 "protein
binding" evidence=IPI] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;ISS]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA;ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
[GO:0009186 "deoxyribonucleoside diphosphate metabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 dictyBase:DDB_G0284071 Pfam:PF03477
GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0006260
EMBL:AAFI02000063 GO:GO:0009263 KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT RefSeq:XP_638726.1
HSSP:P21524 ProteinModelPortal:Q54Q71 SMR:Q54Q71 STRING:Q54Q71
EnsemblProtists:DDB0230075 GeneID:8624396 KEGG:ddi:DDB_G0284071
ProtClustDB:CLSZ2429164 GO:GO:0009186 Uniprot:Q54Q71
Length = 870
Score = 2618 (926.6 bits), Expect = 2.8e-272, P = 2.8e-272
Identities = 496/791 (62%), Positives = 613/791 (77%)
Query: 1 MYVVKRDGKQEAVHFDKITARLK---KLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLD 57
MYVVKRDG +E V FDKIT+R+ ++ L+ + DP+ V+QKV +GV+ GV T++LD
Sbjct: 16 MYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTELD 75
Query: 58 ELXXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIA 117
L HPDY LAARI VSNLHK T KSF ET+K Y N +S L APL++
Sbjct: 76 NLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLVS 135
Query: 118 DDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVG 177
++Y+I+MK+ RL+S I KTLERSYL ++ GK+VERPQHMLMRV++G
Sbjct: 136 KELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVERPQHMLMRVSIG 195
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKE 237
IH +D++SAI TY +S++ FTHA+PTLFNAGTP Q+SSCFLV MK+DSI+GIYDTLK+
Sbjct: 196 IHGEDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQ 255
Query: 238 CAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG++VH IRA SYIRGTNGTSNG+VPMLRVFNDTARYVDQGGGKRKGAF
Sbjct: 256 CALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAF 315
Query: 298 AVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAP 357
AVYLEPWHAD+FEF+DL+KN GKEE RARDLFYALWV D+FMERV+ NG W+LFCPNEAP
Sbjct: 316 AVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAP 375
Query: 358 GLADCWGTEFERLYTKYEKEGKA-KKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSN 416
GLA+ E LY KYE ++V++AQ LWF I++SQ+ETGTP++L+KD CN KSN
Sbjct: 376 GLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDACNAKSN 435
Query: 417 QQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSK 476
Q+NLGTI SSNLCTE+IQYTSP E AVCNLASIALP++VR+ VGS K
Sbjct: 436 QKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQK-----------VGSTDPK 484
Query: 477 NRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
+ FD + L E+T ++T NLN IID NYYPV A+ SNLRHRPIGIG+QGLAD FI + M
Sbjct: 485 EKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRM 544
Query: 537 PFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSD 596
PFDS A +LN +I ETIY+ AL S E+A R+G YE++ GSP SKGILQ DMW V PS
Sbjct: 545 PFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSS 604
Query: 597 RWDWGGLRD-MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
RW+W L+D +++K G+RNSLL+APMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +
Sbjct: 605 RWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTI 664
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAV 715
VNK LL DL E+G+WSP +KN+I+ GS+Q I IP++LK +YKTVWEI+Q+TL+DMA
Sbjct: 665 VNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAA 724
Query: 716 DRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +ID SQS N+ + +P F KLTS+HF++W +GLKTGMYYLR+R AADAI+FTVD +
Sbjct: 725 DRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDP-I 783
Query: 776 LKENPKVTDDD 786
+ + PK +++
Sbjct: 784 VSQTPKPVENN 794
>UNIPROTKB|E1C4Q0 [details] [associations]
symbol:E1C4Q0 "Ribonucleoside-diphosphate reductase"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0051290 GO:GO:0009263 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
OMA:PQARNSN TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372
EMBL:AADN02055234 EMBL:AADN02055235 EMBL:AADN02055236
IPI:IPI00580561 Ensembl:ENSGALT00000028034 Uniprot:E1C4Q0
Length = 784
Score = 1659 (589.1 bits), Expect = 5.5e-270, Sum P(2) = 5.5e-270
Identities = 305/455 (67%), Positives = 367/455 (80%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+VVKRDG+QE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVVKRDGRQERVMFDKITSRIQKLCYGLNADFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FS+ + D+YN+ N +G +P+I+ +
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMDDLYNYINPHNGKHSPMISKET 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S II KTLERSYLLK+ KV ERPQHMLMRVAVGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINSKVAERPQHMLMRVAVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT R QLSSCFL+CMKDDSIEGIYDTLK+CA+
Sbjct: 181 NDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLCMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG++V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGLAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ ++VV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLCTE+++YTS E AVCNLASIAL YV
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYV 455
Score = 961 (343.3 bits), Expect = 5.5e-270, Sum P(2) = 5.5e-270
Identities = 189/331 (57%), Positives = 240/331 (72%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KLAEVT ++ NLNKIID+NYYPV A RSN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 461 YDFKKLAEVTKVIVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFE 520
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ+LN+ IFETIYY AL S E+A ++GPYETY GSPVSKGILQ DMW V PSD WD
Sbjct: 521 SPEAQRLNQQIFETIYYGALEASCELAEQQGPYETYEGSPVSKGILQYDMWNVTPSDLWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECF-EPYTSNIYSRRVLSGEFVVVNK 658
W L++ I+ NG + L A + + C E S+++ EF VVN
Sbjct: 581 WKALKEKIA-NGWLSLFLWLHTGCAHPLGSVLTDFCVCELRISDLFL------EFHVVNP 633
Query: 659 HLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRG 718
HLL DLTE GLW+ +KN+II +GS+Q I +IP +LK +YKTVWEI QKT++ MA DRG
Sbjct: 634 HLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRG 693
Query: 719 CYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKE 778
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR++ AA+ I+FT++ L+E
Sbjct: 694 AFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLRE 753
Query: 779 NPKVTDDD-DAKMAQMVCSLTNREECMACGS 808
K ++++ + A MVCSL NR+ECM CGS
Sbjct: 754 REKASEEEKERNKAAMVCSLENRDECMMCGS 784
>SGD|S000001328 [details] [associations]
symbol:RNR3 "Minor isoform of the large subunit of the RNR
complex" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA;TAS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA;IDA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
SGD:S000001328 GO:GO:0005739 GO:GO:0005524 GO:GO:0006260
EMBL:BK006942 EMBL:Z38060 GO:GO:0009263 RefSeq:NP_012198.3
GeneID:854744 KEGG:sce:YIL066C KO:K10807 InterPro:IPR005144
PROSITE:PS51161 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506
GeneTree:ENSGT00390000001372 OrthoDB:EOG480N4T EMBL:M58012
PIR:S48413 RefSeq:NP_012204.3 ProteinModelPortal:P21672 SMR:P21672
DIP:DIP-2563N IntAct:P21672 MINT:MINT-425113 STRING:P21672
PaxDb:P21672 PeptideAtlas:P21672 PRIDE:P21672 EnsemblFungi:YIL066C
GeneID:854750 KEGG:sce:YIL060W CYGD:YIL066c OMA:RTPFICQ
NextBio:977464 Genevestigator:P21672 GermOnline:YIL066C
Uniprot:P21672
Length = 869
Score = 2565 (908.0 bits), Expect = 1.7e-268, Sum P(2) = 1.7e-268
Identities = 470/775 (60%), Positives = 602/775 (77%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV+KRDG++E V FDKIT+R+ +LSYGL D V V+Q++ +GVY GVTT +LD L
Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA+LAARI +SNLHK T K FS+ I+D+++ N +G AP+I+D++
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVIEDLHDWINPATGKHAPMISDEI 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+I+M+N L+S I+ KTLERSYLL++ G+V ERPQH++MRVA+GIH
Sbjct: 121 YNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI+S +KTY++MS R+FTHASPTLFNAGTP Q+SSCFL+ MKDDSIEGIYDTLKECA+
Sbjct: 181 SDIESVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+G+ ++NIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA++
Sbjct: 241 ISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALF 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHADIF+F+D+RK HGKEE RARDLF ALW+PDLFM+RVQ +G W+LF P+ APGL
Sbjct: 301 LEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG EFE LYT+YE+EG+ K ++AQ LW+ IL++Q ETGTP+M++KD CN+K+NQQNL
Sbjct: 361 DVWGDEFEELYTRYEREGRGK-TIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNL 419
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIKSSNLC E+++Y+SP ETAVCNLASIALP +V E+ S K +
Sbjct: 420 GTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFV-EV-------------SEDGKTASY 465
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+FE+L E+ ++T NLN++ID NYYPV AR SN++HRPI +GVQGLADT+++L +PF+S
Sbjct: 466 NFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFES 525
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIY+ L S E+A +EG Y T+ GSP SKGILQ DMW P WDW
Sbjct: 526 EEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDW 585
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+G+RNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W +K +I +GS+Q +P +P+ELK +YKTVWEI QKT+++MA DR Y
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID S SLN+ + P+ GK+TS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D V
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQEV 760
Score = 41 (19.5 bits), Expect = 1.7e-268, Sum P(2) = 1.7e-268
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 765 DAIKFTVDTSVLKENPKVTDDDDAKMAQMVCSLTNREECMAC 806
D++ V T +KE+ D + C+ E C +C
Sbjct: 826 DSVAPAVPTETIKEDSDEKKCDIYNEKVIACTAPTPEACESC 867
>UNIPROTKB|P50648 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:57267 "Plasmodium falciparum Dd2" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:U01323 ProteinModelPortal:P50648 SMR:P50648
Uniprot:P50648
Length = 806
Score = 1552 (551.4 bits), Expect = 5.7e-266, Sum P(2) = 5.7e-266
Identities = 288/455 (63%), Positives = 355/455 (78%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV+ R G++E + FD+I R+++LSYGL E DP V+Q V G+Y G+ T +LDEL
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLH-ELVDPARVTQGVINGMYSGIKTCELDELA 59
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ +V
Sbjct: 60 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDVRGRPASLISKEV 118
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YD I+ + RL+ EI KTLERSYLL++ K++ERPQH+LMRV++GIH
Sbjct: 119 YDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPR Q+SSCFL+ MK DSIEGI++TLK+CA+
Sbjct: 179 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG+FAVY
Sbjct: 239 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVY 298
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
+EPWH+DIFEFLDLRKNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE PGL+
Sbjct: 299 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 358
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LYTKYE+E KK V AQ+LWF IL+SQIETG PYML+KD+CN KSNQ+NL
Sbjct: 359 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNL 418
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLC E+I+YTSP E AVCNLASIAL ++V
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV 453
Score = 1030 (367.6 bits), Expect = 5.7e-266, Sum P(2) = 5.7e-266
Identities = 195/320 (60%), Positives = 248/320 (77%)
Query: 476 KNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
+ + F+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL
Sbjct: 456 EKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLR 515
Query: 536 MPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS 595
P++S A++LNK IFET+YY AL S E+A+ GPYE+Y GSP S+GILQ DMW
Sbjct: 516 YPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVD 575
Query: 596 DR-WDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV 654
++ WDW L+ I K+G+RNSLL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF
Sbjct: 576 NKYWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFF 635
Query: 655 VVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMA 714
VVN HLL DL + GLW +K ++I +GS+Q I +IP++LK +YKTVWEIKQK ++DMA
Sbjct: 636 VVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMA 695
Query: 715 VDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
DRG +ID SQSLNI++ +P F KL+S+HF+ W +GLKTG YYLR++AA DAIKFTVDT
Sbjct: 696 ADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTH 755
Query: 775 VLKENPKVTDDDDAKMAQMV 794
V K K+ + D ++ + V
Sbjct: 756 VAKNAVKLKNADGVQITREV 775
>UNIPROTKB|E9PD78 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=IEA] [GO:0051290 "protein heterotetramerization"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0051290 GO:GO:0009263 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 IPI:IPI00943207 ProteinModelPortal:E9PD78 SMR:E9PD78
Ensembl:ENST00000423050 ArrayExpress:E9PD78 Bgee:E9PD78
Uniprot:E9PD78
Length = 695
Score = 1376 (489.4 bits), Expect = 6.0e-262, Sum P(2) = 6.0e-262
Identities = 250/358 (69%), Positives = 300/358 (83%)
Query: 98 IKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL 157
++D+YN+ N +G +P++A DI++ N RL+S II KTLERSYLL
Sbjct: 1 MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLL 60
Query: 158 KVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSS 217
K+ GKV ERPQHMLMRV+VGIHK+DID+AI+TY+++S+RWFTHASPTLFNAGT R QLSS
Sbjct: 61 KINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSS 120
Query: 218 CFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLR 277
CFL+ MKDDSIEGIYDTLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLR
Sbjct: 121 CFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLR 180
Query: 278 VFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDL 337
V+N+TARYVDQGG KR GAFA+YLEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDL
Sbjct: 181 VYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDL 240
Query: 338 FMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQ 397
FM+RV++N WSL CPNE PGL + WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ
Sbjct: 241 FMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQ 300
Query: 398 IETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
ETGTPYML+KD+CN+KSNQQNLGTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 301 TETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 358
Score = 1168 (416.2 bits), Expect = 6.0e-262, Sum P(2) = 6.0e-262
Identities = 218/332 (65%), Positives = 266/332 (80%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 364 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 423
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 424 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWD 483
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 484 WKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 543
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 544 LLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 603
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 604 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 663
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
KV+ +++ K A MVCSL NR+EC+ CGS
Sbjct: 664 EKVSKEEEEKERNTAAMVCSLENRDECLMCGS 695
Score = 38 (18.4 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNE 107
ASLA + V++ H K +E K + + N+
Sbjct: 350 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNK 382
>UNIPROTKB|O61065 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
chain" species:5807 "Cryptosporidium parvum" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AF043243 ProteinModelPortal:O61065
SMR:O61065 STRING:O61065 Uniprot:O61065
Length = 803
Score = 1472 (523.2 bits), Expect = 4.8e-260, Sum P(2) = 4.8e-260
Identities = 271/455 (59%), Positives = 345/455 (75%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYVV R G++E V FD+I +R+ KLSYGL DP V+Q V G+Y G+ TS+LDEL
Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGLH-PLVDPARVTQAVINGLYSGIKTSELDELA 59
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
H D++ LAARI SNLHKNT + +YN + + G APLI+ V
Sbjct: 60 SQTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYN-FKDNQGCPAPLISKPV 118
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YD IM+N R++S+I KTLERSYLLK+ KVVERPQH+LMRV+ GIH
Sbjct: 119 YDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMRVSCGIHC 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI++A++TY ++SQ++FTHA+PTLFN+GTPR Q+SSCFL+ + +DSI GI+DTL +CA
Sbjct: 179 GDIEAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSINGIFDTLTKCAN 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+GV+V NIR TGSYIRGTNG SNG++PMLRV+NDTARY+DQGGGKRKGA A+Y
Sbjct: 239 ISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGGGKRKGAIAIY 298
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH D+ EF+++RKNHGKEE R RDLF ALWVPDLFMERV+ + W+L CP+E GL
Sbjct: 299 LEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDECRGLQ 358
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG +F++LY +YEK+G+ +K ++AQ LWF IL++QIETGTP++ +KD N KSNQ+NL
Sbjct: 359 DVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAANSKSNQKNL 418
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTI SSNLCTE+I+YTS E AVCNLASI LP++V
Sbjct: 419 GTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFV 453
Score = 1054 (376.1 bits), Expect = 4.8e-260, Sum P(2) = 4.8e-260
Identities = 205/345 (59%), Positives = 256/345 (74%)
Query: 477 NRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
N+ FDF+KL EVT ++T NLNK+IDV YY ++ ++SNLRHRP+GIG+QGLAD F++L M
Sbjct: 457 NKTFDFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRM 516
Query: 537 PFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNP-S 595
P++S A++LNK IFE IYY AL S E+A + GPYETY GSP SKGILQ DMWGV P S
Sbjct: 517 PYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDS 576
Query: 596 DRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
DW L+D ISK+G+RNSLL++PMPTASTSQILGNNE FEP+TSNIY RRVLSGEF V
Sbjct: 577 GLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFV 636
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAV 715
VN HLL+DL E+GLW +K II ++GS+Q I IPE+++ +YKTVWEIKQKT++DMA
Sbjct: 637 VNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAA 696
Query: 716 DRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG Y+ SQSLNIHM+ NF KL+S+HF+ W +GLKTG+YYLR+++A I+FTVD +
Sbjct: 697 DRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQL 756
Query: 776 LKENPKVTDDDDAKMAQ---------MVCSL--TNR---EECMAC 806
LK K D + Q + C L TN EECM C
Sbjct: 757 LKSETKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801
>UNIPROTKB|P50647 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5838 "Plasmodium falciparum FCR-3/Gambia"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:AF205580 PIR:B48687 ProteinModelPortal:P50647 SMR:P50647
Uniprot:P50647
Length = 804
Score = 1493 (530.6 bits), Expect = 3.5e-255, Sum P(2) = 3.5e-255
Identities = 279/455 (61%), Positives = 347/455 (76%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV+ R G++E + FD+I R+++LSYGL P V+Q V G+Y + T +LDEL
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ +V
Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDGRGRPASLISKEV 119
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YD I+ + RL+ EI KTLERSYLL++ K++ERPQH+LMRV++GIH
Sbjct: 120 YDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 179
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPR Q+SSCFL+ MK DSIEGI++TLK+CA+
Sbjct: 180 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 239
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG++AVY
Sbjct: 240 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVY 299
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
+EPWH+DIFEFLDLRKNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE PGL+
Sbjct: 300 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 359
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LYTKYE+E KK V AQ+LWF IL+SQIETG P L+KD+CN K + NL
Sbjct: 360 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCNAKPIK-NL 418
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
GTIK SNLC E+I+YTSP E AVCNLASIAL ++V
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV 453
Score = 987 (352.5 bits), Expect = 3.5e-255, Sum P(2) = 3.5e-255
Identities = 190/320 (59%), Positives = 244/320 (76%)
Query: 476 KNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
+ + F+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL
Sbjct: 456 EKKEFNFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLR 515
Query: 536 MPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS 595
++S A++LNK I+ET+YY AL S + + GPYE+Y GSP S+GILQ DMW
Sbjct: 516 YLYESDAAKELNKRIYETMYYAALEMSVDWL-QSGPYESYQGSPGSQGILQFDMWNAKVD 574
Query: 596 DR-WDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV 654
++ WDW L+ I+K G+RN LL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF
Sbjct: 575 NKYWDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFF 634
Query: 655 VVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMA 714
VVN HLL DL + GLW +K ++I +GS+Q I +IP++LK +YKTVWEIKQK ++DMA
Sbjct: 635 VVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMA 694
Query: 715 VDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
DRG +ID SQSLNI++ +P F KL+S+HF+ W +GLKTG YYLR++AA DAIKFTVDT
Sbjct: 695 ADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTH 754
Query: 775 VLKENPKVTDDDDAKMAQMV 794
V K K+ + D ++ + V
Sbjct: 755 VAKNAVKLKNADGVQITREV 774
>UNIPROTKB|O15909 [details] [associations]
symbol:RNR1 "Ribonucleoside-diphosphate reductase large
subunit" species:5702 "Trypanosoma brucei brucei" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GO:GO:0009263 InterPro:IPR005144 PROSITE:PS51161
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
EMBL:U80910 ProteinModelPortal:O15909 SMR:O15909
EuPathDB:TriTrypDB:Tb11.02.5720 EuPathDB:TriTrypDB:Tb427tmp.02.5720
Uniprot:O15909
Length = 838
Score = 2294 (812.6 bits), Expect = 6.0e-238, P = 6.0e-238
Identities = 453/797 (56%), Positives = 576/797 (72%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXX 62
V KRDG E + +R+ L G+ + D + + V GV +G++TS LDEL
Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67
Query: 63 XXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYD 122
HPDY LA R+ V+ LHK T +S ++ + ++ H ++ + APLI+++++D
Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD 127
Query: 123 IIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKV-QGK----VVERPQHMLMRVAVG 177
I K++A L I KTLERSYLL+V +G+ VVERPQ M +RVA+G
Sbjct: 128 IANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALG 187
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKE 237
IH +D++ +TY MSQ +FTHA+PTLFNAGTP Q+SSCFLV M++DSI+GIYDTLK+
Sbjct: 188 IHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQ 247
Query: 238 CAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CAIISKSAGGIG+ +HNIRA GSYI GTNGTSNG+VPMLRV+N+TARYVDQGGGKRKGAF
Sbjct: 248 CAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAF 307
Query: 298 AVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAP 357
A+YLEPWHADIF FL L+KN GKE+ RARDLFY LW+PDLFMERV+S+G W+L PN AP
Sbjct: 308 AIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAP 367
Query: 358 GLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQ 417
L+DC+G EF LY +YE+EG+ + +QAQ LWF IL+SQ+ETG P+ML+KD CN KSNQ
Sbjct: 368 FLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQ 427
Query: 418 QNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKN 477
+NLGTIK SNLCTE+++YTS E AVCNLASIALPR+V++ G+
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVKD----------------GA-- 469
Query: 478 RYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMP 537
FD+ L EVT +VT NLN++ID N+YPV AR SNLRHRP+GIGVQGLAD F LL +P
Sbjct: 470 --FDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLP 527
Query: 538 FDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMW------- 590
F EA++LN+ IFETIY A+ S+E+A ++GPYET+ GSP S+G LQ D+W
Sbjct: 528 FAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIR 587
Query: 591 GVNPSD------RWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644
G+N WDW L++ + K G+RNSLL+APMPTASTSQILGNNEC EP+TSNIY
Sbjct: 588 GMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIY 647
Query: 645 SRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWE 704
RRVLSGEF VVNKHL+ +L + LW+ ++ KII +GSV I +IPE ++ +YK VWE
Sbjct: 648 VRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWE 707
Query: 705 IKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764
I+QK L+DMA DRG YID SQSLN+ + P +LTS+HF++W +GLKTGMYYLRS+ AA
Sbjct: 708 IRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAA 767
Query: 765 DAIKFTVDTSVLKENPK 781
DAIKFT+D +KE PK
Sbjct: 768 DAIKFTLDPKAMKELPK 784
>UNIPROTKB|E9PL69 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01008934
ProteinModelPortal:E9PL69 SMR:E9PL69 Ensembl:ENST00000534285
ArrayExpress:E9PL69 Bgee:E9PL69 Uniprot:E9PL69
Length = 570
Score = 1168 (416.2 bits), Expect = 5.9e-220, Sum P(2) = 5.9e-220
Identities = 218/332 (65%), Positives = 266/332 (80%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 239 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 298
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 299 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWD 358
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 359 WKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 418
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 419 LLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 478
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 479 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 538
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
KV+ +++ K A MVCSL NR+EC+ CGS
Sbjct: 539 EKVSKEEEEKERNTAAMVCSLENRDECLMCGS 570
Score = 979 (349.7 bits), Expect = 5.9e-220, Sum P(2) = 5.9e-220
Identities = 176/233 (75%), Positives = 205/233 (87%)
Query: 223 MKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
MKDDSIEGIYDTLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+T
Sbjct: 1 MKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT 60
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERV 342
ARYVDQGG KR GAFA+YLEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV
Sbjct: 61 ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRV 120
Query: 343 QSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGT 402
++N WSL CPNE PGL + WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGT
Sbjct: 121 ETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGT 180
Query: 403 PYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
PYML+KD+CN+KSNQQNLGTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 181 PYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 233
Score = 38 (18.4 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNE 107
ASLA + V++ H K +E K + + N+
Sbjct: 225 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNK 257
>UNIPROTKB|F1SUZ5 [details] [associations]
symbol:F1SUZ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 Pfam:PF03477 GO:GO:0006260 InterPro:IPR005144
PROSITE:PS51161 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 GeneTree:ENSGT00390000001372 EMBL:CU467106
EMBL:CU466349 Ensembl:ENSSSCT00000016142 OMA:XRPGAFA Uniprot:F1SUZ5
Length = 789
Score = 1160 (413.4 bits), Expect = 1.5e-219, Sum P(3) = 1.5e-219
Identities = 215/331 (64%), Positives = 265/331 (80%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF KLAEVT ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 459 YDFTKLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFE 518
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 519 SPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWD 578
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 579 WKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 638
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW+ +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 639 LLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 698
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 699 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 758
Query: 780 PKVTDDDDAKM--AQMVCSLTNREECMACGS 808
KV+ +++ + A MVCSL NR+EC+ CGS
Sbjct: 759 EKVSKEEEKERNTAAMVCSLENRDECLMCGS 789
Score = 664 (238.8 bits), Expect = 1.5e-219, Sum P(3) = 1.5e-219
Identities = 116/163 (71%), Positives = 139/163 (85%)
Query: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFC 352
R GAFA+YLEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL C
Sbjct: 291 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 350
Query: 353 PNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCN 412
PNE PGL + WG EFE+LY YE++G +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN
Sbjct: 351 PNECPGLDEVWGEEFEKLYESYERQGHVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 410
Query: 413 KKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
+KSNQQNLGTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 411 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 453
Score = 336 (123.3 bits), Expect = 1.5e-219, Sum P(3) = 1.5e-219
Identities = 66/161 (40%), Positives = 94/161 (58%)
Query: 7 DGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXX 66
DG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 7 DGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAAT 66
Query: 67 XXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMK 126
HPDYA LAARI VSNLHK TKK FS+ ++D++N+ N +G +P++A DI++
Sbjct: 67 LTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLFNYINPHNGKHSPMVARSTLDIVLA 126
Query: 127 NAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERP 167
N ++ II R+Y+ G +RP
Sbjct: 127 NKDKIQCFIILKCIFPELFCNTHVCVRAYIYFQGGNKTDRP 167
>UNIPROTKB|Q8SR37 [details] [associations]
symbol:ECU10_0920 "Ribonucleoside-diphosphate reductase
large chain" species:284813 "Encephalitozoon cuniculi GB-M1"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
GO:GO:0009263 KO:K10807 eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 HOGENOM:HOG000057035 TIGRFAMs:TIGR02506 OMA:YKYGVKT
EMBL:AL590449 RefSeq:NP_586207.1 ProteinModelPortal:Q8SR37
SMR:Q8SR37 STRING:Q8SR37 PRIDE:Q8SR37 GeneID:859856
GenomeReviews:AL590449_GR KEGG:ecu:ECU10_0920 Uniprot:Q8SR37
Length = 768
Score = 1085 (387.0 bits), Expect = 1.3e-206, Sum P(2) = 1.3e-206
Identities = 208/474 (43%), Positives = 309/474 (65%)
Query: 9 KQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXXXX 68
K E + D I +R++ L + H D + +++ +G + +T + +
Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70
Query: 69 XNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNA 128
HP+Y +++RI+VS +H+ T SF E IK + H ++++++Y II+++
Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIKYIQKHRG--------MVSEEMYGIILEHG 122
Query: 129 ARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIK 188
++ I TL +SYL+KV +++ERPQ M MRVA+ IHK D + +
Sbjct: 123 ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIHKTDFEKVRE 182
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGI 248
Y+++S +FTHA+PTL+N+ QL+SCFL+ ++DSIEG+Y + + AII+K +GGI
Sbjct: 183 VYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKYSGGI 242
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADI 308
G+++H IR+ GS +R T G SNGI+P+++V N T RY++QG +R G+ A++LEPWH +I
Sbjct: 243 GLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPWHMEI 302
Query: 309 FEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFE 368
F+FL+LRKN G EE RARD+F ALW+ DLFMERV++N WSLFCP++A GL+D WG EF
Sbjct: 303 FDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWGEEFN 362
Query: 369 RLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNL 428
LY KYEK ++ VV AQ LW I+++QIETGTPYM +KD CN+ SNQQ+LGTIKSSNL
Sbjct: 363 ALYCKYEKT-ISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQHLGTIKSSNL 421
Query: 429 CTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDF 482
C E+++Y+S ET+VCNLASI LP +V++ E+ + + NR DF
Sbjct: 422 CAEIVEYSSGEETSVCNLASICLPMFVKDGWFDFEAFRRVVKILTVNLNRVIDF 475
Score = 936 (334.5 bits), Expect = 1.3e-206, Sum P(2) = 1.3e-206
Identities = 173/313 (55%), Positives = 231/313 (73%)
Query: 476 KNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
K+ +FDFE V I+T NLN++ID NYYPVE ARRSN+R+RPIGIGVQGLAD F +L
Sbjct: 449 KDGWFDFEAFRRVVKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILR 508
Query: 536 MPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS 595
+ F+S A+ LN+DIFE +YY A+ S E+A +EGP+ +Y GSP+SKGI ++ G S
Sbjct: 509 LAFESDGARSLNQDIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKAS 568
Query: 596 DRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
WDW GLR+ I ++GVRNSLL+A MPTA TSQI GNNE FEP+ SNIY+RR +GEF +
Sbjct: 569 GNWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQI 628
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAV 715
VN+HL++DL +GLWS +KN +I ++GS+Q I IP E++ IYKT WEIK K+++D+A
Sbjct: 629 VNQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAA 688
Query: 716 DRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DR ++D SQSLNI + +P + +LTS+HF+ + GLKTGMYYLR+R AIKFTVD +
Sbjct: 689 DRQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKL 748
Query: 776 LKEN-PKVTDDDD 787
++ + D DD
Sbjct: 749 AEKTLSSMNDTDD 761
>UNIPROTKB|F5H861 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IEA]
[GO:0017076 "purine nucleotide binding" evidence=IEA] [GO:0051290
"protein heterotetramerization" evidence=IEA] InterPro:IPR000788
InterPro:IPR013346 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
GO:GO:0006260 GO:GO:0051290 GO:GO:0017076 GO:GO:0009263
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02506 HGNC:HGNC:10451
ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI01016072
ProteinModelPortal:F5H861 SMR:F5H861 Ensembl:ENST00000537197
ArrayExpress:F5H861 Bgee:F5H861 Uniprot:F5H861
Length = 454
Score = 1168 (416.2 bits), Expect = 3.1e-164, Sum P(2) = 3.1e-164
Identities = 218/332 (65%), Positives = 266/332 (80%)
Query: 480 FDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
+DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+
Sbjct: 123 YDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFE 182
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WD
Sbjct: 183 SAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWD 242
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN H
Sbjct: 243 WKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPH 302
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG
Sbjct: 303 LLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGA 362
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 363 FIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK 422
Query: 780 PKVTDDDDAK---MAQMVCSLTNREECMACGS 808
KV+ +++ K A MVCSL NR+EC+ CGS
Sbjct: 423 EKVSKEEEEKERNTAAMVCSLENRDECLMCGS 454
Score = 452 (164.2 bits), Expect = 3.1e-164, Sum P(2) = 3.1e-164
Identities = 79/117 (67%), Positives = 98/117 (83%)
Query: 339 MERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQI 398
M+RV++N WSL CPNE PGL + WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ
Sbjct: 1 MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQT 60
Query: 399 ETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYV 455
ETGTPYML+KD+CN+KSNQQNLGTIK SNLCTE+++YTS E AVCNLAS+AL YV
Sbjct: 61 ETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV 117
Score = 38 (18.4 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNE 107
ASLA + V++ H K +E K + + N+
Sbjct: 109 ASLALNMYVTSEHTYDFKKLAEVTKVVVRNLNK 141
>TIGR_CMR|CBU_1553 [details] [associations]
symbol:CBU_1553 "ribonucleoside-diphosphate reductase,
alpha subunit" species:227377 "Coxiella burnetii RSA 493"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477
GO:GO:0005524 GO:GO:0006260 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0031419 InterPro:IPR005144 PROSITE:PS51161 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
OMA:PQARNSN TIGRFAMs:TIGR02506 HOGENOM:HOG000057036
ProtClustDB:PRK07207 RefSeq:NP_820536.1 ProteinModelPortal:Q83BF6
PRIDE:Q83BF6 GeneID:1209463 KEGG:cbu:CBU_1553 PATRIC:17931867
BioCyc:CBUR227377:GJ7S-1534-MONOMER Uniprot:Q83BF6
Length = 941
Score = 1266 (450.7 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
Identities = 302/795 (37%), Positives = 445/795 (55%)
Query: 31 IEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXXXXXNHPDYASLAARIVVSNLHKNT 90
+E D V + ++ ++ GV + + N P+Y + AR+++ +L++
Sbjct: 170 LEGVDAVKILEETKNNLFDGVALKDVYKGLVMTARTLVENEPNYTYVTARLLLHDLYREV 229
Query: 91 KKSFS--ETI--KDMYNHYNE--RSGLKAPLIADDVYDIIMK-NAARLDSEIIXXXXXXX 143
+ + + +D+ ++Y E ++ ++ + + ++ + + L +
Sbjct: 230 LNGLNLPQDLMHEDIAHYYPEAFKNFIRHGIETEHLHPNLQTFDLNYLAQALKPERDQQF 289
Query: 144 XXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS----AIKTYHMMSQRWFT 199
+TL YL+ Q +E PQ MRVA+G+ + + ++ A++ Y+++S F
Sbjct: 290 TYLSLQTLYDRYLIHHQQVRIELPQVFFMRVAMGLAQSEGEARNQRAVEFYNVLSSFDFM 349
Query: 200 HASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATG 259
++PTLFN+GT QLSSCFL + D S++GIY LK+ A++SK AGG+G +RA G
Sbjct: 350 SSTPTLFNSGTVFPQLSSCFLTTVPD-SLDGIYGALKDNALLSKYAGGLGNDWTPVRAMG 408
Query: 260 SYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHG 319
+YI+GTNG S G+VP L V + TA V+QGG KRKGA YLE WH DI EFLDLRKN G
Sbjct: 409 AYIKGTNGKSLGVVPFLNVADATAIAVNQGG-KRKGAVCAYLETWHMDIEEFLDLRKNTG 467
Query: 320 KEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKE-- 377
+ R D+ A W+PDLFM+RV +G W+LF P+E P L D +G FE Y YE++
Sbjct: 468 DDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFSPDEVPDLHDKFGEAFEIAYVAYEEKAH 527
Query: 378 -GKAK-KVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQY 435
G+ + K + A +LW +IL ETG P++ FKD CN +S QQ++G I SSNLCTE+
Sbjct: 528 RGEIRSKTISALSLWRKILSMLFETGHPWVTFKDACNIRSPQQHVGVIHSSNLCTEITLN 587
Query: 436 TSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTEN 495
TS E AVCNL SI L ++++ KL D EKLA T
Sbjct: 588 TSREEIAVCNLGSINLVNHMKD---------GKL-----------DTEKLARTTKTAIRM 627
Query: 496 LNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIY 555
L+ +ID+NYY V AR SNL+HRPIG+G+ G D L +P+ S A Q ETI
Sbjct: 628 LDNVIDINYYSVPQARTSNLKHRPIGLGLMGFQDALYLQNIPYASEAAVQFADQSMETIS 687
Query: 556 YHALRTSSEIAAREGPYETYHGSPVSKGILQPDM-----------WGVNPSDRWDWGGLR 604
Y+A++ S E+A GPYET++ S S+GIL D + N DW LR
Sbjct: 688 YYAIQASMELAKERGPYETFNNSLWSQGILPIDSIQLLKKSRGKYFEQNTDQTLDWNALR 747
Query: 605 DMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDL 664
+ +G+RNS ++A PTA+ S I G ++ EP N++ + LSGEF V+N +L+ +L
Sbjct: 748 KQVVAHGMRNSNVMAIAPTATISNICGISQSIEPTYQNLFVKSNLSGEFTVINPYLVREL 807
Query: 665 TEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHS 724
LW ++ + + Y +GSVQKI +IP ELK +Y T +E++ + LV+ A R +ID +
Sbjct: 808 KSRQLWDNVMVHDLKYYNGSVQKIDRIPAELKKLYATAFEVEPRWLVEAASRRQKWIDQA 867
Query: 725 QSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVL-----KEN 779
QSLN++M +P+ KL L+ AWLRGLKT YYLRS A K T+ + L + N
Sbjct: 868 QSLNLYMAEPSGKKLDVLYRMAWLRGLKT-TYYLRSMGATGTEKATIHDTTLNAVTGQNN 926
Query: 780 PKVT--DDDDAKMAQ 792
P DD D + Q
Sbjct: 927 PNACAIDDPDCEACQ 941
Score = 45 (20.9 bits), Expect = 1.4e-131, Sum P(2) = 1.4e-131
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 3 VVKRDGKQEAVHFDKITARLKK 24
VVKRDG+ ++IT +KK
Sbjct: 32 VVKRDGRVVKYDANRITIAMKK 53
>UNIPROTKB|Q48FF6 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000058 GenomeReviews:CP000058_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 RefSeq:YP_275880.1 STRING:Q48FF6 GeneID:3557025
KEGG:psp:PSPPH_3738 PATRIC:19976913 HOGENOM:HOG000057036
ProtClustDB:PRK07207 Uniprot:Q48FF6
Length = 970
Score = 1251 (445.4 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 299/778 (38%), Positives = 422/778 (54%)
Query: 30 SIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXXXXXNHPDYASLAARIVVSNLHKN 89
S+ D L+ + +Y GV ++ P+Y+ + AR+++ L
Sbjct: 174 SLAEVDANLIQTETLKNLYDGVALKDVNTALVMTARTLVEREPNYSFVTARLLMDTLRAE 233
Query: 90 TKKSFSETIKDMYNHYNERSGLKA---PL-IADDV-YDIIMKNAARLDSE-----IIXXX 139
+ D H+ E + L A P +A + ++++ A D E I
Sbjct: 234 GLGFLG--VADSATHH-EMADLYAKALPAYVATGIKFELLNPVLAEFDLEKLGKAINHER 290
Query: 140 XXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGI---HKDDIDSAIKTYHMMSQR 196
+TL Y + G E PQ MRVA+G+ K D AI+ Y+++S
Sbjct: 291 DQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAMGLAIEEKAREDRAIEFYNLLSSF 350
Query: 197 WFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIR 256
+ ++PTLFNAGT R QLSSC+L + DD + GIY + + A++SK AGG+G +R
Sbjct: 351 DYMSSTPTLFNAGTLRPQLSSCYLTTVPDD-LSGIYHAIHDNAMLSKFAGGLGNDWTPVR 409
Query: 257 ATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRK 316
A GSYI+GTNG S G+VP L+V NDTA V+QGG KRKGA YLE WH DI EF++LRK
Sbjct: 410 ALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KRKGAVCAYLETWHMDIEEFIELRK 468
Query: 317 NHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEK 376
N G + R D+ A W+PDLFM+RV +G W+LF P+E P L D G F+ Y YE
Sbjct: 469 NTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSPSEVPDLHDLTGKAFQERYEYYEA 528
Query: 377 ----EGKAK--KVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCT 430
GK K K +QA++LW ++L ETG P++ FKD CN +S QQ++G + SSNLCT
Sbjct: 529 LTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCT 588
Query: 431 EVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTG 490
E+ T+ E AVCNL SI LP ++ N D +KL
Sbjct: 589 EITLNTNKDEIAVCNLGSINLPNHI--------------------VNGKLDTDKLKRTVD 628
Query: 491 IVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDI 550
+ L+ +ID+NYY V A+ SNLRHRP+G+G+ G D L +P+ S A Q
Sbjct: 629 VAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAVQFADTS 688
Query: 551 FETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMW-------G-----VNPSDRW 598
E + Y+A++ S ++A G YET+ GS SKGIL D G V+ +
Sbjct: 689 MEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDVDLKETL 748
Query: 599 DWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 658
DW +R + K G+RNS ++A PTA+ + I G ++ EP N+Y + LSGEF V+N
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807
Query: 659 HLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRG 718
+L+ DL LW ++ N + Y DGSVQ+I +IP+ELK +Y T +E+ K +VD A R
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867
Query: 719 CYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVL 776
+ID +QSLN+++ + KL + AW RGLKT YYLR+ AA K TV+T L
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL 924
Score = 37 (18.1 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 VVKRDGKQEAVHFDKITARLKK 24
V+KR+G DKIT + K
Sbjct: 34 VIKRNGTVVPYTDDKITVAITK 55
>UNIPROTKB|Q886B0 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE016853 GenomeReviews:AE016853_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:NP_791496.1 ProteinModelPortal:Q886B0 GeneID:1183308
KEGG:pst:PSPTO_1671 PATRIC:19994588
BioCyc:PSYR223283:GJIX-1701-MONOMER Uniprot:Q886B0
Length = 970
Score = 1249 (444.7 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 302/801 (37%), Positives = 430/801 (53%)
Query: 7 DGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXX 66
DG + ++ + + GL+ D L+ + +Y GV ++
Sbjct: 153 DGSFAPLDMGRLNTIVTEACEGLA--EVDADLIQTETLKNLYDGVALKDVNTALVMTART 210
Query: 67 XXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKA---PL-IADDV-Y 121
P+Y+ + AR+++ L + D H+ E + L A P +A + +
Sbjct: 211 LVEREPNYSFVTARLLMDTLRAEGLGFLG--VADSATHH-EMADLYAKALPAYVATGIKF 267
Query: 122 DIIMKNAARLDSE-----IIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAV 176
+++ A D E I +TL Y + G E PQ MRVA+
Sbjct: 268 ELLNPVLAEFDLEKLGKAINHERDQQFTYLGLQTLYDRYFIHKDGVRFELPQIFFMRVAM 327
Query: 177 GI---HKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYD 233
G+ K D AI+ Y+++S + ++PTLFNAGT R QLSSC+L + DD + GIY
Sbjct: 328 GLAIEEKAREDRAIEFYNLLSSFDYMSSTPTLFNAGTLRPQLSSCYLTTVPDD-LSGIYH 386
Query: 234 TLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKR 293
+ + A++SK AGG+G +RA GSYI+GTNG S G+VP L+V NDTA V+QGG KR
Sbjct: 387 AIHDNAMLSKFAGGLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KR 445
Query: 294 KGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCP 353
KGA YLE WH DI EF++LRKN G + R D+ A W+PDLFM+RV +G W+LF P
Sbjct: 446 KGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFSP 505
Query: 354 NEAPGLADCWGTEFERLYTKYEK----EGKAK--KVVQAQNLWFEILKSQIETGTPYMLF 407
+E P L D G F+ Y YE GK K K +QA++LW ++L ETG P++ F
Sbjct: 506 SEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLTF 565
Query: 408 KDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPS 467
KD CN +S QQ++G + SSNLCTE+ T+ E AVCNL SI LP ++
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI------------ 613
Query: 468 KLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
N D +KL + L+ +ID+NYY V AR SNLRHRP+G+G+ G
Sbjct: 614 --------VNGKLDTDKLKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGF 665
Query: 528 ADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQP 587
D L +P+ S A Q E + Y+A++ S ++A G YET+ GS S+GIL
Sbjct: 666 QDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPL 725
Query: 588 DMW-------G-----VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D G V+ + DW +R + K G+RNS ++A PTA+ + I G ++
Sbjct: 726 DSQQILIEQRGQKYIDVDLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQS 784
Query: 636 FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEEL 695
EP N+Y + LSGEF V+N +L+ DL LW ++ N + Y DGSVQ+I +IP+EL
Sbjct: 785 IEPTYQNLYVKSNLSGEFTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQEL 844
Query: 696 KAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGM 755
K +Y T +E+ K +VD A R +ID +QSLN+++ + KL + AW RGLKT
Sbjct: 845 KELYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-T 903
Query: 756 YYLRSRAAADAIKFTVDTSVL 776
YYLR+ AA K TV+T L
Sbjct: 904 YYLRALAATSTEKSTVNTGKL 924
Score = 37 (18.1 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 VVKRDGKQEAVHFDKITARLKK 24
V+KR+G DKIT + K
Sbjct: 34 VIKRNGTVVPYTDDKITVAITK 55
>CGD|CAL0002354 [details] [associations]
symbol:RNR3 species:5476 "Candida albicans" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
Identities = 242/399 (60%), Positives = 298/399 (74%)
Query: 384 VQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAV 443
V A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSNLC E+++Y+SP ETAV
Sbjct: 381 VSAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAV 440
Query: 444 CNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVN 503
CNLAS+ALP Y++ +G FDFEKL VT ++T NLN++IDV
Sbjct: 441 CNLASLALPTYLKTT--------EDAIG--------FDFEKLHSVTKVLTRNLNRVIDVT 484
Query: 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSS 563
YPVETA SN RHRPI +GVQGLAD F L +PFDS A+ LN IFETIY+ AL S
Sbjct: 485 KYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASV 544
Query: 564 EIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPT 623
E+A +EGPYET+ GSP SKGILQ DMW PS +DW L+D I G+RNSLLVAPMPT
Sbjct: 545 ELAMKEGPYETFQGSPASKGILQFDMWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPT 604
Query: 624 ASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDG 683
ASTSQILG NECFEPYTSN+Y+RRVL+GE+ +VNK+L+ DL ++G+W ++NKII ++G
Sbjct: 605 ASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENG 664
Query: 684 SVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLH 743
S+Q IP IP+E+K +YKTVWE+ QK ++DMA DRG ++D SQS+NIH+ P GKLTS H
Sbjct: 665 SIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCH 724
Query: 744 FHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPKV 782
F+AW +GLKTGMYYLR++AA+ AI+FTVD KE KV
Sbjct: 725 FYAWEKGLKTGMYYLRTQAASRAIQFTVDA---KEAEKV 760
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 250/482 (51%), Positives = 322/482 (66%)
Query: 8 GKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXXX 67
G++E KI L+++S+ L D ++ S V G+ +T +L
Sbjct: 9 GEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVES--VQRGLPSSLTIEELYTFIAEVIASR 66
Query: 68 XXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKN 127
HPDYA LA RI L+ SFSE ++ + + +S +P I+ Y ++ K+
Sbjct: 67 VIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP-ISSAFYKVVKKH 125
Query: 128 AARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAI 187
LD I KTLE SYLLK+ G+V E PQ++ MRVA+GIH++DI++
Sbjct: 126 GEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQNDINAIA 185
Query: 188 KTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGG 247
+TY +MSQ++F HASPTL+NAG+ LSSCFLV MKDDSI+GI+ TL E A+ISK++GG
Sbjct: 186 ETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEAALISKASGG 245
Query: 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
IG+ VHNIR+ GSYI TNG SNG+VPMLRV+N+TARYVDQGGGKR GAFA+Y+EPWH D
Sbjct: 246 IGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFAIYIEPWHGD 305
Query: 308 IFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEF 367
IF+ L++RKNHG EE R RDLFY LW+PDLFM+RV+ N W+LF PNEA GL+D +G EF
Sbjct: 306 IFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVGLSDVYGEEF 365
Query: 368 ERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSN 427
E+LY KYE EG KV A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSN
Sbjct: 366 EKLYCKYESEGFGTKV-SAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSN 424
Query: 428 LCTEVIQYTSPTETAVCNLASIALPRYVRE----MGVPMES-HPSKLVGSRGSKNRYFDF 482
LC E+++Y+SP ETAVCNLAS+ALP Y++ +G E H V +R + NR D
Sbjct: 425 LCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSVTKVLTR-NLNRVIDV 483
Query: 483 EK 484
K
Sbjct: 484 TK 485
>UNIPROTKB|Q59M54 [details] [associations]
symbol:RNR3 "Ribonucleoside-diphosphate reductase"
species:237561 "Candida albicans SC5314" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=NAS] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 CGD:CAL0002354 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 KO:K10807 InterPro:IPR005144 PROSITE:PS51161
eggNOG:COG0209 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710800.1 RefSeq:XP_710811.1 ProteinModelPortal:Q59M54
SMR:Q59M54 STRING:Q59M54 GeneID:3647580 GeneID:3647591
KEGG:cal:CaO19.13267 KEGG:cal:CaO19.5845 Uniprot:Q59M54
Length = 816
Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
Identities = 242/399 (60%), Positives = 298/399 (74%)
Query: 384 VQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAV 443
V A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSNLC E+++Y+SP ETAV
Sbjct: 381 VSAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSNLCCEIVEYSSPKETAV 440
Query: 444 CNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVN 503
CNLAS+ALP Y++ +G FDFEKL VT ++T NLN++IDV
Sbjct: 441 CNLASLALPTYLKTT--------EDAIG--------FDFEKLHSVTKVLTRNLNRVIDVT 484
Query: 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSS 563
YPVETA SN RHRPI +GVQGLAD F L +PFDS A+ LN IFETIY+ AL S
Sbjct: 485 KYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASV 544
Query: 564 EIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPT 623
E+A +EGPYET+ GSP SKGILQ DMW PS +DW L+D I G+RNSLLVAPMPT
Sbjct: 545 ELAMKEGPYETFQGSPASKGILQFDMWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPT 604
Query: 624 ASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDG 683
ASTSQILG NECFEPYTSN+Y+RRVL+GE+ +VNK+L+ DL ++G+W ++NKII ++G
Sbjct: 605 ASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENG 664
Query: 684 SVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLH 743
S+Q IP IP+E+K +YKTVWE+ QK ++DMA DRG ++D SQS+NIH+ P GKLTS H
Sbjct: 665 SIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCH 724
Query: 744 FHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPKV 782
F+AW +GLKTGMYYLR++AA+ AI+FTVD KE KV
Sbjct: 725 FYAWEKGLKTGMYYLRTQAASRAIQFTVDA---KEAEKV 760
Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
Identities = 250/482 (51%), Positives = 322/482 (66%)
Query: 8 GKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXXXXXXX 67
G++E KI L+++S+ L D ++ S V G+ +T +L
Sbjct: 9 GEEEDFDSVKIHKLLEEVSFNLGDLDLDQIVES--VQRGLPSSLTIEELYTFIAEVIASR 66
Query: 68 XXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKN 127
HPDYA LA RI L+ SFSE ++ + + +S +P I+ Y ++ K+
Sbjct: 67 VIYHPDYAILAGRIETRKLYLKVPYSFSENVERLRKYRPRKSNSYSP-ISSAFYKVVKKH 125
Query: 128 AARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAI 187
LD I KTLE SYLLK+ G+V E PQ++ MRVA+GIH++DI++
Sbjct: 126 GEFLDKVIDKTRDYNLTYFGIKTLESSYLLKIDGEVAELPQYLFMRVAIGIHQNDINAIA 185
Query: 188 KTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGG 247
+TY +MSQ++F HASPTL+NAG+ LSSCFLV MKDDSI+GI+ TL E A+ISK++GG
Sbjct: 186 ETYDLMSQKYFIHASPTLYNAGSEFNYLSSCFLVAMKDDSIDGIFKTLNEAALISKASGG 245
Query: 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
IG+ VHNIR+ GSYI TNG SNG+VPMLRV+N+TARYVDQGGGKR GAFA+Y+EPWH D
Sbjct: 246 IGIHVHNIRSNGSYIASTNGNSNGLVPMLRVYNNTARYVDQGGGKRPGAFAIYIEPWHGD 305
Query: 308 IFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEF 367
IF+ L++RKNHG EE R RDLFY LW+PDLFM+RV+ N W+LF PNEA GL+D +G EF
Sbjct: 306 IFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFSPNEAVGLSDVYGEEF 365
Query: 368 ERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSN 427
E+LY KYE EG KV A LW IL SQ ETG PYML+KD CN KSNQ+N+GTIKSSN
Sbjct: 366 EKLYCKYESEGFGTKV-SAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIKSSN 424
Query: 428 LCTEVIQYTSPTETAVCNLASIALPRYVRE----MGVPMES-HPSKLVGSRGSKNRYFDF 482
LC E+++Y+SP ETAVCNLAS+ALP Y++ +G E H V +R + NR D
Sbjct: 425 LCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSVTKVLTR-NLNRVIDV 483
Query: 483 EK 484
K
Sbjct: 484 TK 485
>UNIPROTKB|Q607W9 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE017282 GenomeReviews:AE017282_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 OMA:PQARNSN
TIGRFAMs:TIGR02506 HOGENOM:HOG000057036 ProtClustDB:PRK07207
RefSeq:YP_114078.1 ProteinModelPortal:Q607W9 GeneID:3104511
KEGG:mca:MCA1634 PATRIC:22607102 Uniprot:Q607W9
Length = 969
Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
Identities = 304/818 (37%), Positives = 439/818 (53%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELXXX 62
V DG ++ + ++ +++ GLS +P + ++ ++ GV ++
Sbjct: 149 VTLEDGTRKPLDTARLRHVVEEACRGLS--DVEPAWIIEETRRNLFDGVPEKEVAPTLVM 206
Query: 63 XXXXXXXNHPDYASLAARIVVSNLHKNTKK-----SFSETIKDMYNHYNE------RSGL 111
+Y+ +AAR+++ L + + S T +M Y E + G+
Sbjct: 207 TARTRIEQESNYSYVAARLLLDALRREALSFLGHGAVSATQDEMSERYGEYFKDYVKRGV 266
Query: 112 KAPLIADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKV-VERPQHM 170
+ L++ ++ ++ RL + +TL Y + G + E PQ
Sbjct: 267 ELELLSPELARFDLQ---RLGEALKPERDLQFNYLGLQTLYDRYFIH-SGDIRFELPQAF 322
Query: 171 LMRVAVGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDS 227
MRVA+G+ ++D AI+ Y ++S F ++PTLFNAGT R QLSSC+L + DD
Sbjct: 323 FMRVAMGLAIQEVDREERAIEFYDLLSSFDFMSSTPTLFNAGTLRPQLSSCYLTTVPDD- 381
Query: 228 IEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
++GIY +K+ A++SK AGG+G +R G++I+GTNG S G+VP L+V NDTA V+
Sbjct: 382 LDGIYSAIKDNALLSKFAGGLGNDWTRVRGMGAHIKGTNGKSQGVVPFLKVANDTAVAVN 441
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGL 347
QGG KRKGA YLE WH DI EFLDLRKN G + R D+ A WVPDLFM+RV
Sbjct: 442 QGG-KRKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEERE 500
Query: 348 WSLFCPNEAPGLADCWGTEFERLYTKYEKE---GKAK--KVVQAQNLWFEILKSQIETGT 402
W+LF PN+ P L D G FER Y +YE + G+ K K + A LW ++L ETG
Sbjct: 501 WTLFSPNDTPDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGH 560
Query: 403 PYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPM 462
P++ FKD CN + Q+ G + SSNLCTE+ +T+ E AVCNL S+ L ++ G
Sbjct: 561 PWLAFKDPCNLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHITPDGA-- 618
Query: 463 ESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGI 522
D EKL L+ +ID+NYY V ARRSNLRHRP+G+
Sbjct: 619 -----------------LDTEKLQRTIATGMRMLDNVIDINYYSVPQARRSNLRHRPVGL 661
Query: 523 GVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSK 582
G+ G D L +P+ S EA E + Y+A++ S ++AA G Y ++ GS S+
Sbjct: 662 GIMGFQDALYKLRLPYASQEAVAFADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWSR 721
Query: 583 GILQPDM--------WGVNPSDR---WDWGGLRDMISKNGVRNSLLVAPMPTASTSQILG 631
GIL D G DR DW LR+ + G+RNS +A PTA+ S I G
Sbjct: 722 GILPIDSIALLEEGRGGYLQMDRSQTLDWNALRERVRTVGMRNSNTMAIAPTATISNICG 781
Query: 632 NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQI 691
++ EP N++ + LSGEF VVN +L+ DL +GLW ++ N + Y DGSVQKI +I
Sbjct: 782 VSQSIEPTYQNLFVKSNLSGEFTVVNPYLVRDLKTLGLWDAVMINDLKYYDGSVQKIERI 841
Query: 692 PEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGL 751
PE LK +Y T +EI + L++ R ++D +QSLN+++ +P+ KL +L+ AW+RGL
Sbjct: 842 PETLKQLYATAFEIDARWLIEAGSRRQKWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGL 901
Query: 752 KTGMYYLRSRAAADAIKFTVDTSVLKENPKVTDD-DDA 788
KT YYLRS A K T L N TD DDA
Sbjct: 902 KT-TYYLRSLGATHVEKSTAFDGKL--NAVKTDPIDDA 936
>UNIPROTKB|Q5HXD4 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 682 (245.1 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 167/449 (37%), Positives = 256/449 (57%)
Query: 1 MYVVKRDGKQEAVHFDKI---TARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLD 57
M V+KR+G+ E + KI T+ K G+++ + + K+ G++T ++
Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELE---LDAKI--QFRDGISTEEIQ 55
Query: 58 E-LXXXXXXXXXXNHPDYASLAARIVVSNLHK--NTKKSFSETIKDMYNHYNERSGLKAP 114
+ L + P++ +AAR+ + +L+K N ++ +++ Y E+ G +
Sbjct: 56 KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNH-LRE-YFEKGEKEG-RIL 112
Query: 115 LIADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLK-VQGKVVERPQHMLMR 173
L + YD+ NA I KTL YL+K +G +E PQ M M
Sbjct: 113 LGLKEKYDLDDLNAY-----IKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMA 167
Query: 174 VAVGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEG 230
+A+ + +++ + A K Y ++S+ A+PTL NA T R QLSSC+ + D+IEG
Sbjct: 168 IAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCY-IGSTPDNIEG 226
Query: 231 IYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 290
I+D+ +E A++SK GGIG +RA G I G + GI+P L++ ND A VDQ G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286
Query: 291 GKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSL 350
RKGA AVY+EPWH DI +F+DLRKN G+E RA +LF ALW+ DLFM+RV++N W+L
Sbjct: 287 -TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345
Query: 351 FCPNEAPGLADCWGTEFERLYTKYEK-EGKAKKVVQAQNLWFEILKSQIETGTPYMLFKD 409
F P + L D +G FE+ Y +YEK E K++V+A+ LW +IL + ETG P++ FKD
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLNYFETGLPFLCFKD 405
Query: 410 TCNKKSNQQNLGTIKSSNLCTEVIQYTSP 438
+ N+ + ++G I+SSNLCTE+ Q T P
Sbjct: 406 SANRANPNAHVGIIRSSNLCTEIFQNTEP 434
Score = 232 (86.7 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 477 NRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
++ + E + V L+ +ID+N+YP + +NL+ R IG+GV G A +
Sbjct: 504 SKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKI 563
Query: 537 PFDSTEAQQLNK--DIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMW---- 590
+ S E LNK +I E I + A+ SS +A +G YE + GS SKGI D+
Sbjct: 564 YWGSDE--HLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKA 621
Query: 591 -------GVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
G+ DW LR+ + K+G+RN L+A PT+S S ++G + EP
Sbjct: 622 KALTLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRK 681
Query: 644 YSRRVLSGEFVVVNKHLLHD 663
+ + LSG VV +L D
Sbjct: 682 WFEQNLSGMIPVVVPNLSLD 701
Score = 122 (48.0 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 688 IPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHM--DQPNFGKLTSLHFH 745
+P + + Y +E+ QK LV A RG +ID QSLNI + D+ + G L ++
Sbjct: 695 VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQL 754
Query: 746 AWLRGLKTGMYYLRSRAAADAIKFTV-DTSV 775
AW G+K+ YYLRS + D+ K V D S+
Sbjct: 755 AWELGVKS-TYYLRSESP-DSEKVNVADRSI 783
Score = 59 (25.8 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 432 VIQYTSPTETAVCNLASIALPR-YVRE 457
V +Y + +TAVCNLASI L + Y +E
Sbjct: 484 VEKYKNDGKTAVCNLASINLSKVYTKE 510
>TIGR_CMR|CJE_0024 [details] [associations]
symbol:CJE_0024 "ribonucleoside-diphosphate reductase,
alpha subunit" species:195099 "Campylobacter jejuni RM1221"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 RefSeq:YP_178051.1 ProteinModelPortal:Q5HXD4
STRING:Q5HXD4 GeneID:3230679 KEGG:cjr:CJE0024 PATRIC:20041737
HOGENOM:HOG000057034 OMA:RAHDLFP ProtClustDB:PRK08447
BioCyc:CJEJ195099:GJC0-23-MONOMER Uniprot:Q5HXD4
Length = 789
Score = 682 (245.1 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 167/449 (37%), Positives = 256/449 (57%)
Query: 1 MYVVKRDGKQEAVHFDKI---TARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLD 57
M V+KR+G+ E + KI T+ K G+++ + + K+ G++T ++
Sbjct: 1 MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELE---LDAKI--QFRDGISTEEIQ 55
Query: 58 E-LXXXXXXXXXXNHPDYASLAARIVVSNLHK--NTKKSFSETIKDMYNHYNERSGLKAP 114
+ L + P++ +AAR+ + +L+K N ++ +++ Y E+ G +
Sbjct: 56 KTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNH-LRE-YFEKGEKEG-RIL 112
Query: 115 LIADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLK-VQGKVVERPQHMLMR 173
L + YD+ NA I KTL YL+K +G +E PQ M M
Sbjct: 113 LGLKEKYDLDDLNAY-----IKPERDMQFTYLGIKTLYDRYLIKDSKGMPIELPQQMFMA 167
Query: 174 VAVGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEG 230
+A+ + +++ + A K Y ++S+ A+PTL NA T R QLSSC+ + D+IEG
Sbjct: 168 IAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCY-IGSTPDNIEG 226
Query: 231 IYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 290
I+D+ +E A++SK GGIG +RA G I G + GI+P L++ ND A VDQ G
Sbjct: 227 IFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITNDIAVAVDQLG 286
Query: 291 GKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSL 350
RKGA AVY+EPWH DI +F+DLRKN G+E RA +LF ALW+ DLFM+RV++N W+L
Sbjct: 287 -TRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFMKRVRANDKWTL 345
Query: 351 FCPNEAPGLADCWGTEFERLYTKYEK-EGKAKKVVQAQNLWFEILKSQIETGTPYMLFKD 409
F P + L D +G FE+ Y +YEK E K++V+A+ LW +IL + ETG P++ FKD
Sbjct: 346 FDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLNYFETGLPFLCFKD 405
Query: 410 TCNKKSNQQNLGTIKSSNLCTEVIQYTSP 438
+ N+ + ++G I+SSNLCTE+ Q T P
Sbjct: 406 SANRANPNAHVGIIRSSNLCTEIFQNTEP 434
Score = 232 (86.7 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 477 NRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
++ + E + V L+ +ID+N+YP + +NL+ R IG+GV G A +
Sbjct: 504 SKVYTKEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKI 563
Query: 537 PFDSTEAQQLNK--DIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMW---- 590
+ S E LNK +I E I + A+ SS +A +G YE + GS SKGI D+
Sbjct: 564 YWGSDE--HLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKA 621
Query: 591 -------GVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643
G+ DW LR+ + K+G+RN L+A PT+S S ++G + EP
Sbjct: 622 KALTLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRK 681
Query: 644 YSRRVLSGEFVVVNKHLLHD 663
+ + LSG VV +L D
Sbjct: 682 WFEQNLSGMIPVVVPNLSLD 701
Score = 122 (48.0 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 688 IPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHM--DQPNFGKLTSLHFH 745
+P + + Y +E+ QK LV A RG +ID QSLNI + D+ + G L ++
Sbjct: 695 VPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSLDKASGGYLNEIYQL 754
Query: 746 AWLRGLKTGMYYLRSRAAADAIKFTV-DTSV 775
AW G+K+ YYLRS + D+ K V D S+
Sbjct: 755 AWELGVKS-TYYLRSESP-DSEKVNVADRSI 783
Score = 59 (25.8 bits), Expect = 3.1e-106, Sum P(4) = 3.1e-106
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 432 VIQYTSPTETAVCNLASIALPR-YVRE 457
V +Y + +TAVCNLASI L + Y +E
Sbjct: 484 VEKYKNDGKTAVCNLASINLSKVYTKE 510
>UNIPROTKB|Q71XL1 [details] [associations]
symbol:nrdA "Ribonucleoside-diphosphate reductase"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 EMBL:AE017262 GenomeReviews:AE017262_GR
InterPro:IPR005144 PROSITE:PS51161 GO:GO:0009265 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 HOGENOM:HOG000057034 RefSeq:YP_014777.1
ProteinModelPortal:Q71XL1 STRING:Q71XL1 GeneID:2798407
KEGG:lmf:LMOf2365_2187 PATRIC:20325695 OMA:RTHDLFT
ProtClustDB:PRK09209 Uniprot:Q71XL1
Length = 763
Score = 742 (266.3 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 216/672 (32%), Positives = 342/672 (50%)
Query: 2 YVVKRDGKQEAVHFDK--ITARLKKLSYGLSIEHCDPVLVSQKVCTGVYK--GVTTSQL- 56
Y+VK DG + FDK + L+K+ D +KV V K +L
Sbjct: 10 YIVK-DGGNRKLPFDKSRLDGYLEKIHE--EFPKLDLEDYKRKVFNFVEKKEDYAADELV 66
Query: 57 DELXXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLI 116
D L + P++ AAR+ ++ L+K K+ D Y Y GL+ L
Sbjct: 67 DYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYNDDDKYGSY---VGLQESLG 123
Query: 117 ADDVYD-IIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKV-------QGKVVERPQ 168
+Y I+KN ++ D I T YLL + V E PQ
Sbjct: 124 ERGIYSGNILKNYSKEDL-IAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQ 182
Query: 169 HMLMRVAVGIHKDDI-DSAIK----TYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCM 223
+ +A+ + +++ + +K Y +S + T A+PTL NAG QLSSCF+ +
Sbjct: 183 ERWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV 242
Query: 224 KDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTA 283
DDS++GIYD+ + A +SK GG+G + +R+TG+ IRG G S G++P ++ N+TA
Sbjct: 243 -DDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTA 301
Query: 284 RYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQ 343
VDQ G +RKGA AVYL+ +H DI FLDLR N+G + RA D+F A+ +PD+FME V+
Sbjct: 302 VSVDQLG-QRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVE 360
Query: 344 SNGLWSLFCPNEAPG-----LADCWG-TEFERLYT-KYEK----EGKAKKVVQAQNLWFE 392
G W LF P+E L D + ++ E + KYE+ E +KK+V+A ++
Sbjct: 361 RRGEWYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKR 420
Query: 393 ILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALP 452
I+ SQ+ETG P+M ++D N+ + ++ G + SSNLCTE++Q SPT+ + + S
Sbjct: 421 IMMSQLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKM-IQEIISGDQI 479
Query: 453 RYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARR 512
++ G + + S + R E+L EV L+ +ID+N PV A
Sbjct: 480 VITKQAGDFVVCNLSSVNLGRAVVAEEGTLERLIEVE---VRMLDNVIDLNELPVPQATI 536
Query: 513 SNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPY 572
+N ++R IG+G G L + +DS EA++ +++E I Y A+R S+++A +G Y
Sbjct: 537 TNQKYRSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAY 596
Query: 573 ETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGN 632
+ + GS + G + + + +W L +++ G+RN+ LVA P ST+QI G+
Sbjct: 597 KVFKGSDWNTG----EYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGS 652
Query: 633 NECFEPYTSNIY 644
+P S Y
Sbjct: 653 TASIDPIYSAFY 664
Score = 80 (33.2 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 674 IKNKIIYDDGSVQKIPQIPEELK-AIY----KTVWEIKQKTLVDMAVDRGCYIDHSQSLN 728
I + Y++ + P I +L + Y K +++ Q V R ++D S S N
Sbjct: 659 IYSAFYYEEKKDYRRPVIAPDLNLSTYPYYEKGAYKVDQFASVRQNGRRQRHVDQSLSFN 718
Query: 729 IHMDQP-NFGKLTSLHFHAWLRGLKTGMYYLRS 760
++ KL LH AW GLKT YY+RS
Sbjct: 719 FYVPSGIKASKLLELHMTAWNEGLKT-TYYVRS 750
>TIGR_CMR|CPS_2328 [details] [associations]
symbol:CPS_2328 "ribonucleoside-diphosphate reductase,
alpha subunit" species:167879 "Colwellia psychrerythraea 34H"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
OMA:YKYGVKT HOGENOM:HOG000278076 ProtClustDB:PRK09103
RefSeq:YP_269048.1 ProteinModelPortal:Q482G9 SMR:Q482G9
STRING:Q482G9 GeneID:3522540 KEGG:cps:CPS_2328 PATRIC:21467749
BioCyc:CPSY167879:GI48-2393-MONOMER Uniprot:Q482G9
Length = 756
Score = 569 (205.4 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 185/661 (27%), Positives = 291/661 (44%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
++V KR+G++E + +KI + + GL E V K Y G+ T + E +
Sbjct: 5 LFVTKRNGEKETIDLEKIHRVIAWAADGL--EQVSVSQVELKSHIQFYDGIKTEDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYN---ERSGLKAPLI 116
PDY LAAR+ V +L K F +Y+H E L+
Sbjct: 63 IKSAADLISEETPDYQYLAARLAVFHLRKKAYGQFEPPA--LYDHVVKLVEAGKYDQHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
AD D ++ +D K LE YL+ +V G++ E Q + + V
Sbjct: 121 ADYTKDDFEHMSSFMDHS----RDLNFSYAAMKQLEGKYLVQNRVSGEIYESAQFLYILV 176
Query: 175 AVGIH-KDDIDSAIKT----YHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
+ + K ++S ++ YH +S+ + +P + TP Q SSC L+ C DS+
Sbjct: 177 SACLFAKYPVESRLRYVEDFYHAISRFKISLPTPIMAGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIGV+ IRA GS IR G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGVNAGRIRALGSTIRNGEAFHTGCIPFFKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G EE+R R L Y + L +R+ G
Sbjct: 295 GG-VRGGAATLFYPLWHLEVESLLVLKNNRGVEENRVRHLDYGVQFNKLMYQRLIKGGSI 353
Query: 349 SLFCPNEAPGLADCWGTE---FERLYTKYEKEGKA-KKVVQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + + FERLY +YE + KK ++A L+ + + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFEDQEKFERLYVQYENDDSIRKKRIKAIELFTLFAQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPME 463
+ D CN S + I+ SNLC E+ T P IAL +
Sbjct: 414 LQNVDHCNTHSPFDSSKAAIRQSNLCLEIALPTKPMNDINDENGEIAL--------CTLS 465
Query: 464 SHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIG 523
+ + G+ + + E LA+ + L+ ++D YP+ A+ +++ R +GIG
Sbjct: 466 AF------NLGAIDSLDELEGLAD---LAVRALDSLLDYQDYPIAAAQSASMARRTLGIG 516
Query: 524 VQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKG 583
V A G+ + + A L FE I ++ L+ ++E+A +G + + +SKG
Sbjct: 517 VINYAYYLAKNGLYYSNGSANNLTHRTFEAIQFYLLKATNELAKEQGACPKFDETLLSKG 576
Query: 584 ILQPDMWGVNPSD------RWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFE 637
IL D + D DW LR+ I K+GVRNS + A MP+ ++SQI E
Sbjct: 577 ILPIDTYKKTIDDITGEPLHLDWESLRESIKKHGVRNSTVSALMPSETSSQISNATNGIE 636
Query: 638 P 638
P
Sbjct: 637 P 637
Score = 64 (27.6 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 26/101 (25%), Positives = 48/101 (47%)
Query: 682 DGSVQKIPQIPEELKAIYKTVWEIKQKT-LVDMAVDRGCYIDHSQSLNIHMDQPNF--GK 738
DG ++++ E+LK Y+ +W I +++ ++D + S N + D F GK
Sbjct: 649 DGVLKQVVPEYEKLKGNYELLWNIPDNQGYLELVGIMQKFVDQAISANTNYDPNKFEGGK 708
Query: 739 LTSLHF-----HAWLRGLKTGMYYLRSR-AAADAIKFTVDT 773
+ A+ G+KT +YY +R A+D I+ D+
Sbjct: 709 VPVKQILKDILTAYKLGVKT-LYYHNTRDGASDDIEIEDDS 748
>TIGR_CMR|NSE_0411 [details] [associations]
symbol:NSE_0411 "ribonucleoside-diphosphate reductase,
alpha subunit" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 RefSeq:YP_506298.1 STRING:Q2GDZ8
GeneID:3932191 KEGG:nse:NSE_0411 PATRIC:22680881
HOGENOM:HOG000064500 OMA:EWDLISP ProtClustDB:PRK09102
BioCyc:NSEN222891:GHFU-434-MONOMER Uniprot:Q2GDZ8
Length = 605
Score = 282 (104.3 bits), Expect = 6.7e-59, Sum P(3) = 6.7e-59
Identities = 66/179 (36%), Positives = 104/179 (58%)
Query: 618 VAPMPTASTSQILGNNEC-FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKN 676
+A PTAS S I GN EPY +N+++++ LSG FVV NKHL L G + + +
Sbjct: 429 IAVAPTASISIIAGNTSPGIEPYAANVFTQKTLSGSFVVKNKHLAALLERKGKNTDCVWS 488
Query: 677 KIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNF 736
II ++GSVQ + + E K +++T +E+ Q+ ++++A DR YI SQS+N+ + N
Sbjct: 489 SIISNEGSVQHLDFLDENEKMVFRTAYEMDQRWVIELAADRTPYICQSQSVNLFLHS-NI 547
Query: 737 GK--LTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPK-VTDDDDAKMAQ 792
K L++LHF W +GLK+ +YY RS++ A K + + + P V + DD Q
Sbjct: 548 HKKELSNLHFLGWKKGLKS-LYYCRSKSIQRAYKISQEYKHKSDTPSPVGESDDCIACQ 605
Score = 273 (101.2 bits), Expect = 6.7e-59, Sum P(3) = 6.7e-59
Identities = 70/194 (36%), Positives = 103/194 (53%)
Query: 168 QHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDS 227
Q + RVA + DD A + Y MS WF A+P L N GT R SCFL +DS
Sbjct: 47 QGLFARVAK-YYSDDPKHACRLYDYMSNLWFMPATPILSNGGTSRGLPVSCFLN-ETEDS 104
Query: 228 IEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
+EGI E ++ GG+G N+R+ G ++ +G ++GI+P + V N +
Sbjct: 105 LEGIVGLWNENVWLASHGGGVGSYWGNLRSIGEKVK-CSGKTSGIIPFIVVQNALTLAIS 163
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHR-ARDLFYALWVPDLFMERVQSNG 346
QG R+G+ AVYL H +I EF+DLRK G + +R A +L +A+ + D FM+ V +
Sbjct: 164 QGS-LRRGSSAVYLPVNHPEIIEFIDLRKPTGGDPNRKALNLHHAVVINDDFMKAVLEDK 222
Query: 347 LWSLFCPNEAPGLA 360
W L P + +A
Sbjct: 223 EWDLISPKDGSVIA 236
Score = 176 (67.0 bits), Expect = 6.7e-59, Sum P(3) = 6.7e-59
Identities = 59/199 (29%), Positives = 89/199 (44%)
Query: 376 KEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQ--QNLGT-IKSSNLCTEV 432
K+G V A+ +W IL +++ETG PY+LF DT + +NL +K SNLC+E+
Sbjct: 230 KDGSVIATVGARGIWIRILTARLETGEPYILFIDTVQRLRPDVYKNLNLDVKMSNLCSEI 289
Query: 433 IQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIV 492
T A L E E H N F + + + ++
Sbjct: 290 TLTTGKDHLDNHRTAICCLSSLNLEKFDEWE-H-----------NEQFVRDVMHFLDNVL 337
Query: 493 TENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFE 552
+ + K D + AR S +R R IG+GV G G+PF+S A+ +N IF+
Sbjct: 338 EDFIRKAPDC----MHRARYSAMRERSIGLGVMGFHSFLQSKGIPFESAIAKSVNLKIFK 393
Query: 553 TIYYHALRTSSEIAAREGP 571
I + A + S E+A GP
Sbjct: 394 KIKHEADKISKEMALERGP 412
Score = 38 (18.4 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 548 KDIFETIYYHALRTSSEIAAREGPY 572
K +F T Y R E+AA PY
Sbjct: 508 KMVFRTAYEMDQRWVIELAADRTPY 532
>UNIPROTKB|Q9KSK0 [details] [associations]
symbol:VC1256 "Ribonucleoside-diphosphate reductase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 558 (201.5 bits), Expect = 4.5e-57, Sum P(2) = 4.5e-57
Identities = 185/658 (28%), Positives = 290/658 (44%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-LXX 61
V KRDG++E + DKI + + GL ++ V + Y G+TTS + E +
Sbjct: 7 VTKRDGRKENIDLDKIHRVITWAAEGL--QNVSVSQVELRAHIQFYDGITTSDIHETIIK 64
Query: 62 XXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSE-TIKDMYNHYNERSGLKAPLIADDV 120
PDY LAAR+ V +L K + T+ E+ L+ D
Sbjct: 65 SAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKMVEKGKYDKHLLED-- 122
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVAVGI 178
Y + +D I K LE Y + +V G++ E Q + + VA +
Sbjct: 123 YT--REELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACL 180
Query: 179 H----KDD-IDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSIEGIY 232
K+ +D + Y S + +P + TP Q SSC L+ C DS++ I
Sbjct: 181 FAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLDSIN 238
Query: 233 DTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
T GIG++ IRA GS IRG G +P + F + QGG
Sbjct: 239 ATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGG-V 297
Query: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFC 352
R GA V+ WH + L L+ N G EE+R R + Y + + L +R+ G +LF
Sbjct: 298 RGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFS 357
Query: 353 PNEAPGLADCW---GTEFERLYTKYEKEGKAKK-VVQAQNLWFEILKSQIETGTPYMLFK 408
P++ PGL D + EFERLY KYE + KK V+A ++ +++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFQDQDEFERLYVKYENDPSIKKKTVKALEIFTLLMQERASTGRIYIQNV 417
Query: 409 DTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMG-VPMESHPS 467
D CN S + ++ PT LA++ E G + + + +
Sbjct: 418 DHCNTHSPFD--AAVAPVRQSNLCLEIALPTSP----LANVE-----DESGEIALCTLSA 466
Query: 468 KLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
+G+ S + DFE+L++ +V L+ ++D YP+ ARRS++ R +G+GV
Sbjct: 467 FNLGAIESLD---DFEELSD---LVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520
Query: 528 ADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQP 587
A G+ + A L FE + YH LR S ++A +G +H + +KG++
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580
Query: 588 DMWG-------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
D + P +DW LR I ++G+RNS L A MP+ ++SQI EP
Sbjct: 581 DTYKKDIDLVCAEPL-HYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEP 637
Score = 57 (25.1 bits), Expect = 4.5e-57, Sum P(2) = 4.5e-57
Identities = 33/120 (27%), Positives = 53/120 (44%)
Query: 682 DGSVQKIPQIPE--ELKAIYKTVWEIKQKT-LVDMAVDRGCYIDHSQSLNIHMDQPNFG- 737
DG ++++ +PE LK Y+ +W I + + ++D + S N + D NF
Sbjct: 649 DGILKQV--VPEFTRLKENYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYDPSNFDS 706
Query: 738 ------KLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPKVTDDDDAKMA 791
KL A+ G+KT +YY +R A + D +V KV +DD A A
Sbjct: 707 GKVPMKKLLQDLLTAYKFGVKT-LYYHNTRDGAKDEQ--TDATV-----KVQEDDCASGA 758
>TIGR_CMR|VC_1256 [details] [associations]
symbol:VC_1256 "ribonucleoside-diphosphate reductase, alpha
subunit" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 GenomeReviews:AE003852_GR InterPro:IPR005144
PROSITE:PS51161 GO:GO:0009265 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT ProtClustDB:PRK09103
HSSP:P00452 EMBL:AE004204 PIR:E82223 RefSeq:NP_230901.1
ProteinModelPortal:Q9KSK0 SMR:Q9KSK0 DNASU:2614693 GeneID:2614693
KEGG:vch:VC1256 PATRIC:20081592 Uniprot:Q9KSK0
Length = 761
Score = 558 (201.5 bits), Expect = 4.5e-57, Sum P(2) = 4.5e-57
Identities = 185/658 (28%), Positives = 290/658 (44%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-LXX 61
V KRDG++E + DKI + + GL ++ V + Y G+TTS + E +
Sbjct: 7 VTKRDGRKENIDLDKIHRVITWAAEGL--QNVSVSQVELRAHIQFYDGITTSDIHETIIK 64
Query: 62 XXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSE-TIKDMYNHYNERSGLKAPLIADDV 120
PDY LAAR+ V +L K + T+ E+ L+ D
Sbjct: 65 SAADLISEETPDYQYLAARLAVFHLRKKAYGQYEPPTLLAHVTKMVEKGKYDKHLLED-- 122
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVAVGI 178
Y + +D I K LE Y + +V G++ E Q + + VA +
Sbjct: 123 YT--REELELMDQFIDHRRDLDFSYAAVKQLEGKYFVQNRVTGQIYESAQFLYILVAACL 180
Query: 179 H----KDD-IDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSIEGIY 232
K+ +D + Y S + +P + TP Q SSC L+ C DS++ I
Sbjct: 181 FAKYPKETRLDYIKRFYDATSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLDSIN 238
Query: 233 DTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
T GIG++ IRA GS IRG G +P + F + QGG
Sbjct: 239 ATASSIVRYVSQRAGIGINAGRIRALGSEIRGGEAFHTGCIPFYKYFQTAVKCCSQGG-V 297
Query: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFC 352
R GA V+ WH + L L+ N G EE+R R + Y + + L +R+ G +LF
Sbjct: 298 RGGAATVFYPLWHGEAESLLVLKNNRGVEENRVRHMDYGVQLNKLMYKRLVEGGNITLFS 357
Query: 353 PNEAPGLADCW---GTEFERLYTKYEKEGKAKK-VVQAQNLWFEILKSQIETGTPYMLFK 408
P++ PGL D + EFERLY KYE + KK V+A ++ +++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFQDQDEFERLYVKYENDPSIKKKTVKALEIFTLLMQERASTGRIYIQNV 417
Query: 409 DTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMG-VPMESHPS 467
D CN S + ++ PT LA++ E G + + + +
Sbjct: 418 DHCNTHSPFD--AAVAPVRQSNLCLEIALPTSP----LANVE-----DESGEIALCTLSA 466
Query: 468 KLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
+G+ S + DFE+L++ +V L+ ++D YP+ ARRS++ R +G+GV
Sbjct: 467 FNLGAIESLD---DFEELSD---LVVRALDALLDYQDYPLPAARRSSMNRRTLGVGVINY 520
Query: 528 ADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQP 587
A G+ + A L FE + YH LR S ++A +G +H + +KG++
Sbjct: 521 AYYLAKNGVKYSDGSANGLTHRTFEAMQYHLLRASMKLAKEQGRCPLFHETNYAKGLMPI 580
Query: 588 DMWG-------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
D + P +DW LR I ++G+RNS L A MP+ ++SQI EP
Sbjct: 581 DTYKKDIDLVCAEPL-HYDWDKLRHEIMEHGLRNSTLTALMPSETSSQISNATNGIEP 637
Score = 57 (25.1 bits), Expect = 4.5e-57, Sum P(2) = 4.5e-57
Identities = 33/120 (27%), Positives = 53/120 (44%)
Query: 682 DGSVQKIPQIPE--ELKAIYKTVWEIKQKT-LVDMAVDRGCYIDHSQSLNIHMDQPNFG- 737
DG ++++ +PE LK Y+ +W I + + ++D + S N + D NF
Sbjct: 649 DGILKQV--VPEFTRLKENYELLWNIGSNDGYLHLVGIMQKFVDQAISANTNYDPSNFDS 706
Query: 738 ------KLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPKVTDDDDAKMA 791
KL A+ G+KT +YY +R A + D +V KV +DD A A
Sbjct: 707 GKVPMKKLLQDLLTAYKFGVKT-LYYHNTRDGAKDEQ--TDATV-----KVQEDDCASGA 758
>TIGR_CMR|APH_0331 [details] [associations]
symbol:APH_0331 "ribonucleoside-diphosphate reductase,
alpha subunit" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0209 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HOGENOM:HOG000064500
ProtClustDB:PRK09102 RefSeq:YP_504939.1 ProteinModelPortal:Q2GL12
STRING:Q2GL12 GeneID:3931250 KEGG:aph:APH_0331 PATRIC:20949246
OMA:CEIIEYS BioCyc:APHA212042:GHPM-360-MONOMER Uniprot:Q2GL12
Length = 603
Score = 296 (109.3 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 71/189 (37%), Positives = 104/189 (55%)
Query: 168 QHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDS 227
Q + +RVA + DD A + Y MS+ WF A+P L N GT R SCFL +DS
Sbjct: 41 QQLFVRVAQ-YYSDDSQHAQRLYDYMSKLWFMPATPILSNGGTSRGLPISCFLN-ETEDS 98
Query: 228 IEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
+ GI + E ++ GGIG N+R+ G +RG+ TS GI+P + V N +
Sbjct: 99 LAGILNLWNENVWLASRGGGIGSYWGNLRSIGERVRGSGKTS-GIIPFIVVQNALTLAIS 157
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHR-ARDLFYALWVPDLFMERVQSNG 346
QG R+G+ AVYL WH +I EFLD+R+ G + +R A ++ + + + D FME V+ +
Sbjct: 158 QGS-LRRGSSAVYLPVWHPEIEEFLDIRRPTGGDPNRKALNIHHGVLLSDEFMEAVEHDK 216
Query: 347 LWSLFCPNE 355
W L P +
Sbjct: 217 TWDLLSPKD 225
Score = 229 (85.7 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 54/155 (34%), Positives = 90/155 (58%)
Query: 622 PTASTSQILGNNEC-FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIY 680
PTAS S I GN EPY +N+++ + L+G F+V NK L L G + + I
Sbjct: 427 PTASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQELLKSKGKDDDQVWSSIST 486
Query: 681 DDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGK-L 739
++GSVQ + + + K ++KT +E+ Q+ +++ + DR YI +QS+NI + + L
Sbjct: 487 NEGSVQHLDFLTDHEKLVFKTAYELDQRWVIEHSGDRTPYICQAQSVNIFLPAGVHKRYL 546
Query: 740 TSLHFHAWLRGLKTGMYYLRSRAA--ADAIKFTVD 772
+HF AW +GLK+ +YY+RS++ AD + V+
Sbjct: 547 HKVHFLAWKKGLKS-LYYMRSKSVQRADKVSHEVN 580
Score = 164 (62.8 bits), Expect = 1.1e-54, Sum P(3) = 1.1e-54
Identities = 59/191 (30%), Positives = 90/191 (47%)
Query: 384 VQAQNLWFEILKSQIETGTPYMLFKDTCN--KKSNQQNLGT-IKSSNLCTEVIQYTSPTE 440
V+A++LW +IL +++ETG PY++F D N K + LG +K SNLCTE+ T
Sbjct: 232 VKARDLWIKILTTRVETGEPYIIFVDAVNRCKPEIYKKLGLDVKMSNLCTEITLTTGEDH 291
Query: 441 TAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKII 500
A L + +E + G N F + + + ++T+ + K
Sbjct: 292 LKKSRTAVCCLS------SLNLEYY-DMWCG-----NPQFIEDVMRFLDNVLTDFVQKAP 339
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM-PFDSTEAQQLNKDIFETIYYHAL 559
+E AR S +R R IGIGV G +F+ M PF+S A NK IF + A
Sbjct: 340 T----ELERARYSAMRERSIGIGVMGF-HSFLQSKMVPFESFAATMWNKKIFSYLKSQAD 394
Query: 560 RTSSEIAAREG 570
S ++A +G
Sbjct: 395 AVSRKLALEKG 405
>UNIPROTKB|P00452 [details] [associations]
symbol:nrdA species:83333 "Escherichia coli K-12"
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=IDA] [GO:0005971 "ribonucleoside-diphosphate reductase
complex" evidence=IEA;IDA] [GO:0009263 "deoxyribonucleotide
biosynthetic process" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IDA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013346 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 PDB:1QFN PDBsum:1QFN GO:GO:0009263
EMBL:K02672 InterPro:IPR005144 PROSITE:PS51161 eggNOG:COG0209
KO:K00525 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 OMA:YKYGVKT EMBL:X06999 PIR:H64993
RefSeq:NP_416737.1 RefSeq:YP_490473.1 PDB:1R1R PDB:1RLR PDB:2R1R
PDB:2X0X PDB:2XAK PDB:2XAP PDB:2XAV PDB:2XAW PDB:2XAX PDB:2XAY
PDB:2XAZ PDB:2XO4 PDB:2XO5 PDB:3R1R PDB:3UUS PDB:4ERM PDB:4ERP
PDB:4R1R PDB:5R1R PDB:6R1R PDB:7R1R PDBsum:1R1R PDBsum:1RLR
PDBsum:2R1R PDBsum:2X0X PDBsum:2XAK PDBsum:2XAP PDBsum:2XAV
PDBsum:2XAW PDBsum:2XAX PDBsum:2XAY PDBsum:2XAZ PDBsum:2XO4
PDBsum:2XO5 PDBsum:3R1R PDBsum:3UUS PDBsum:4ERM PDBsum:4ERP
PDBsum:4R1R PDBsum:5R1R PDBsum:6R1R PDBsum:7R1R
ProteinModelPortal:P00452 SMR:P00452 DIP:DIP-584N IntAct:P00452
MINT:MINT-1233906 PaxDb:P00452 PRIDE:P00452
EnsemblBacteria:EBESCT00000000432 EnsemblBacteria:EBESCT00000016572
GeneID:12933136 GeneID:946612 KEGG:ecj:Y75_p2196 KEGG:eco:b2234
PATRIC:32119827 EchoBASE:EB0654 EcoGene:EG10660
HOGENOM:HOG000278076 ProtClustDB:PRK09103
BioCyc:EcoCyc:NRDA-MONOMER BioCyc:ECOL316407:JW2228-MONOMER
BioCyc:MetaCyc:NRDA-MONOMER SABIO-RK:P00452
EvolutionaryTrace:P00452 Genevestigator:P00452 Uniprot:P00452
Length = 761
Score = 543 (196.2 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 194/695 (27%), Positives = 300/695 (43%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNE--RSGLKAPLIA 117
+ PDY LAAR+ + +L K F +Y+H + G +
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 118 DDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVA 175
+D + K ++D+ I K LE YL+ +V G++ E Q + + VA
Sbjct: 121 EDYTEEEFK---QMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSIE 229
+ + + + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWS 349
G R GA ++ WH ++ L L+ N G E +R R + Y + + L R+ +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDIT 354
Query: 350 LFCPNEAPGLADCWGT---EFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPYM 405
LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESH 465
D CN S V Q + +C IALP V E+
Sbjct: 415 QNVDHCNTHS--------PFDPAIAPVRQ------SNLC--LEIALPTKPLN-DVNDENG 457
Query: 466 PSKLVG-SRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGV 524
L S + + ++L E+ + L+ ++D YP+ A+R + R +GIGV
Sbjct: 458 EIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGV 517
Query: 525 QGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGI 584
A G + A L FE I Y+ L+ S+E+A +G ++ + +KGI
Sbjct: 518 INFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGI 577
Query: 585 LQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
L D + N +DW LR+ I +G+RNS L A MP+ ++SQI EP
Sbjct: 578 LPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637
Query: 639 ---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
Y S S+ + + V +HL HD E+ LW
Sbjct: 638 PRGYVSIKASKDGILRQVVPDYEHL-HDAYEL-LW 670
Score = 57 (25.1 bits), Expect = 1.7e-53, Sum P(2) = 1.7e-53
Identities = 24/92 (26%), Positives = 41/92 (44%)
Query: 682 DGSVQKIPQIPEELKAIYKTVWEIKQKT-LVDMAVDRGCYIDHSQSLNIHMDQPNF--GK 738
DG ++++ E L Y+ +WE+ + + +ID S S N + D F GK
Sbjct: 649 DGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGK 708
Query: 739 LTSLHF-----HAWLRGLKTGMYYLRSRAAAD 765
+ A+ G+KT +YY +R A+
Sbjct: 709 VPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAE 739
>TIGR_CMR|BA_1371 [details] [associations]
symbol:BA_1371 "ribonucleoside-diphosphate reductase, alpha
subunit, group I intron-containing" species:198094 "Bacillus
anthracis str. Ames" [GO:0004748 "ribonucleoside-diphosphate
reductase activity, thioredoxin disulfide as acceptor"
evidence=ISS] [GO:0009265 "2'-deoxyribonucleotide biosynthetic
process" evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:AE016879
GenomeReviews:AE016879_GR GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165
InterPro:IPR026459 TIGRFAMs:TIGR04170
EnsemblBacteria:EBBACT00000012288 PATRIC:18780342
ProtClustDB:PRK07632 Uniprot:Q81TB6
Length = 694
Score = 493 (178.6 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 145/523 (27%), Positives = 255/523 (48%)
Query: 153 RSYLLKV--QGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAG- 209
+ Y LK Q + +E + + V++ + + D+ A + M+ ++ + A+PT NAG
Sbjct: 94 KDYALKTNDQKQYLESYEDRVAIVSLYLGRGDVAKAKQFASMIVKQNYQPATPTFLNAGR 153
Query: 210 TPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTS 269
+ R ++ SCFL+ M DDS+ I + +SK GG+ +++ +RA G I+G + +
Sbjct: 154 SRRGEMVSCFLLEM-DDSLNSIGFNINTAMQLSKIGGGVALNLSKLRARGEQIKGIDNAA 212
Query: 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLF 329
+G+VP++++ D+ Y +Q G +RKGA AVYL +H DI EFLD +K + E+ R + L
Sbjct: 213 SGVVPVMKLLEDSFSYANQLG-QRKGAGAVYLNIFHWDIIEFLDSKKINADEKSRIQSLS 271
Query: 330 YALWVPDLFMERVQSNGLWSLFCP----NEAPGLADCWGTEFERLYTKYEKEGKAKKV-- 383
+ VP F E + N + +F P E D + + +Y + K KK
Sbjct: 272 IGIIVPSKFFELAEKNEPFHVFAPYTVYKEYGKHLD--DIDIDEMYDELMSNPKVKKKPL 329
Query: 384 -VQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETA 442
+ A+++ +I Q+E+G PY++FK N + +++GT+K SNLCTE+ Q +E
Sbjct: 330 DISARDMLIKIAMIQLESGYPYLMFKSNANNQHPLKDIGTVKMSNLCTEIFQLQETSE-- 387
Query: 443 VCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDV 502
+ + + + R R++ + GS N + +++ E E L + D+
Sbjct: 388 INDYGTDDIIR--RDINCNL--------GSLNIVN-VMENKEIREAVHAGMEALTAVSDM 436
Query: 503 NYYP-VETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRT 561
P T +++N +G+G L + ++S EA++ + F + Y+++
Sbjct: 437 TIIPNAPTVKKANDELHSVGLGAMNLHGYLAKNKIAYESEEAKEFARTFFMMLNYYSIEK 496
Query: 562 SSEIAAREGP------------------YETYHGSPVSKGILQPDMWGVNPSDRWDWGGL 603
S EIA +G YET SPV++ + Q G++ + DW L
Sbjct: 497 SMEIAKEKGETFKDFDKSDYANGTYFEKYETTDYSPVTEKVQQL-FEGIHIPTKEDWTSL 555
Query: 604 RDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSR 646
++ + KNG+ NS +A PT S S + P S I SR
Sbjct: 556 KEQVQKNGLYNSYRLAIAPTQSISYVQNATSSVMPIVSQIESR 598
Score = 71 (30.1 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 18/75 (24%), Positives = 42/75 (56%)
Query: 688 IPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQP-NFGKLTSLHFHA 746
+P + ++ YK+ +++ Q L+D+ + +ID S ++++ + +L + +A
Sbjct: 609 MPYLSKDTFWYYKSSYDMNQFKLIDLIAEIQEHIDQGISTILYVNSDISTRELARYYIYA 668
Query: 747 WLRGLKTGMYYLRSR 761
+GLK+ +YY R+R
Sbjct: 669 HKKGLKS-LYYTRTR 682
Score = 37 (18.1 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 3 VVKRDGKQEAVHFDKITARLK 23
V + ++ VHF+ + R++
Sbjct: 29 VFMEEARENTVHFNSVAERME 49
>UNIPROTKB|I3LEK6 [details] [associations]
symbol:I3LEK6 "Ribonucleoside-diphosphate reductase"
species:9823 "Sus scrofa" [GO:0006260 "DNA replication"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 UniPathway:UPA00326 GO:GO:0005524
GO:GO:0006260 GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168
GeneTree:ENSGT00390000001372 EMBL:CU466349
Ensembl:ENSSSCT00000032470 Uniprot:I3LEK6
Length = 135
Score = 509 (184.2 bits), Expect = 2.5e-48, P = 2.5e-48
Identities = 95/118 (80%), Positives = 111/118 (94%)
Query: 170 MLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIE 229
MLMRV+VGIHK+DID+AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIE
Sbjct: 1 MLMRVSVGIHKEDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIE 60
Query: 230 GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
GIYDTLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVD
Sbjct: 61 GIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVD 118
>TIGR_CMR|SO_2415 [details] [associations]
symbol:SO_2415 "ribonucleoside-diphosphate reductase, alpha
subunit" species:211586 "Shewanella oneidensis MR-1" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005524
GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR005144 PROSITE:PS51161 KO:K00525 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506 OMA:YKYGVKT
HOGENOM:HOG000278076 ProtClustDB:PRK09103 RefSeq:NP_718005.1
HSSP:P00452 ProteinModelPortal:Q8EEG7 SMR:Q8EEG7 GeneID:1170130
KEGG:son:SO_2415 PATRIC:23524447 Uniprot:Q8EEG7
Length = 762
Score = 497 (180.0 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 186/693 (26%), Positives = 299/693 (43%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
M V KR G +E + DKI + + GL ++ V + + G+ T + E +
Sbjct: 5 MTVTKRCGARETIDLDKIHRVITWAAKGL--KNVSVSEVELRTHLQFFDGIPTEAIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADD 119
PDY LAAR+ V +L K F E K +Y+H + L
Sbjct: 63 IKSAADLISPESPDYQFLAARLAVFHLRKKAFGQF-EPPK-LYDHVTKLVEL-GKYDMHI 119
Query: 120 VYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRVAVG 177
+ D + +D+ I K LE YL+ +V ++ E Q + + VA
Sbjct: 120 LQDYTREELDIMDTYIDHWRDMNFSYAAVKQLEGKYLVQNRVTHEIYESAQFLYILVAAC 179
Query: 178 IH----KDDIDSAIKTYHMMSQRWFTHASPTLFNAG--TPRAQLSSCFLV-CMKDDSIEG 230
+ K+ +K ++ F + PT AG TP Q SSC L+ C DS++
Sbjct: 180 LFARYPKETRLQYVKDFYDAVST-FKISLPTPIMAGVRTPTRQFSSCVLIEC--GDSLDS 236
Query: 231 IYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 290
I T GIG++ IRA GS IRG G +P + F + QGG
Sbjct: 237 INATASSIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCLPFYKYFQTAVKSCSQGG 296
Query: 291 GKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSL 350
R GA ++ WH ++ L L+ N G E++R R L Y + + L +R+ SL
Sbjct: 297 -VRGGAATLFYPIWHLEVESLLVLKNNRGVEDNRIRHLDYGVQLNKLMYQRLIKGESISL 355
Query: 351 FCPNEAPGLADCW---GTEFERLYTKYEKEGKA-KKVVQAQNLWFEILKSQIETGTPYML 406
F P++ PGL D + EFERLY +YE++ KK ++A +L+ +++ + TG Y+
Sbjct: 356 FSPSDVPGLYDAFFEDQAEFERLYLQYEQDSSIRKKTLKAVDLFSLMMQERASTGRIYIQ 415
Query: 407 FKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALP-RYVREMGVPMESH 465
D CN S + K + + ++ +C IALP + + + P
Sbjct: 416 NVDHCNTHSPFDS----KVAPI----------RQSNLC--LEIALPTKPLNNIDDP-NGE 458
Query: 466 PSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQ 525
+ S + D +L + + L+ ++D YP++ A+ S++ R +GIGV
Sbjct: 459 IALCTLSALNLGTITDLAELEPLADLAVRALDNLLDYQDYPIKAAQISSMNRRTLGIGVI 518
Query: 526 GLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGIL 585
A+ GM + A L FE I ++ L+ S +A +G ++ + ++GIL
Sbjct: 519 NFANYLAKNGMKYSDGSANNLTHKTFEAIQFYLLKASMNLAKEKGACPLFNETTYAQGIL 578
Query: 586 QPDMWGVNPSD------RWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPY 639
D + + DW LR I + G+RNS L A MP+ ++SQI EP
Sbjct: 579 PIDTYKRDLDKICSEPLHLDWEALRSDIKEYGLRNSTLSALMPSETSSQISNATNGIEPP 638
Query: 640 TSNIYSRRVLSGEF--VVVNKHLLHDLTEMGLW 670
I + G+ VV + L + E+ LW
Sbjct: 639 RGLISVKASKDGQLKQVVPDFDTLKNNYEL-LW 670
Score = 55 (24.4 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 23/106 (21%), Positives = 50/106 (47%)
Query: 682 DGSVQKIPQIPEELKAIYKTVWEI-KQKTLVDMAVDRGCYIDHSQSLNIHMDQPNF-GKL 739
DG ++++ + LK Y+ +W++ + + + ++D + S N + D F G+
Sbjct: 649 DGQLKQVVPDFDTLKNNYELLWQMPSNEGYLQLVGIMQKFVDQAISANTNYDPARFEGRK 708
Query: 740 TSLH------FHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ +A+ G+KT +YY +R A + T++ KE+
Sbjct: 709 VPMQTLLKDLLNAYKLGVKT-LYYHNTRDGASDQHDDI-TNIEKED 752
>TIGR_CMR|DET_0623 [details] [associations]
symbol:DET_0623 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_181365.1
ProteinModelPortal:Q3Z8T4 STRING:Q3Z8T4 GeneID:3230018
KEGG:det:DET0623 PATRIC:21608313 OMA:FIDRIND ProtClustDB:CLSK837372
BioCyc:DETH243164:GJNF-624-MONOMER Uniprot:Q3Z8T4
Length = 599
Score = 266 (98.7 bits), Expect = 2.4e-44, Sum P(4) = 2.4e-44
Identities = 74/216 (34%), Positives = 115/216 (53%)
Query: 149 KTLERSYLLK-VQGKVVERPQHMLMRVAVGI------HKDDID-SAIKT--YHMMSQRWF 198
+ LE+ YL K G+V+E P+ M RVA + + D S I+ Y MS+ F
Sbjct: 22 RVLEKRYLKKDANGRVIETPEDMFRRVARVVASAECKYAPGADTSRIEDEFYQAMSRLEF 81
Query: 199 THASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRAT 258
SPTL NAG QLS+CF++ + +DSIE I+D +K+ A+I KS GG G S N+R
Sbjct: 82 LPNSPTLLNAGRQVGQLSACFVLPV-EDSIESIFDAVKQTALIHKSGGGTGFSFSNLRPA 140
Query: 259 GSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNH 318
G + + G V ++ +F+ A YV QGG R+G A L+ H DI +F+ +
Sbjct: 141 GDKVGELTEVAGGPVSVINIFSAAADYVRQGG-VRRGCNAAILDVTHPDILKFISCK--- 196
Query: 319 GKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPN 354
G + + + + ++ V FM +V+S + + P+
Sbjct: 197 G-DPNALTNFYISVVVTREFMTKVRSGEDYDIINPH 231
Score = 187 (70.9 bits), Expect = 2.4e-44, Sum P(4) = 2.4e-44
Identities = 47/135 (34%), Positives = 70/135 (51%)
Query: 444 CNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVN 503
CNL SI+LPR ++ G ++V D+EKL + L+ +IDVN
Sbjct: 295 CNLGSISLPRMLKRDG-------ERVV---------VDYEKLGRTVKMAIRFLDNVIDVN 338
Query: 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSS 563
+P ++ LR+R IG+GV G AD +L+G+P++S EA I E I + R SS
Sbjct: 339 RFPTPEIEKATLRNRKIGLGVMGFADMLVLMGIPYNSEEAIFQADQIMEFIKETSHRASS 398
Query: 564 EIAAREGPYETYHGS 578
++A G + Y GS
Sbjct: 399 KLAEARGSFPAYEGS 413
Score = 91 (37.1 bits), Expect = 2.4e-44, Sum P(4) = 2.4e-44
Identities = 37/167 (22%), Positives = 75/167 (44%)
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV-VNKH 659
G + D+ +RN+ + PT + S I G + EP + ++ R +L GE ++ +N +
Sbjct: 412 GSIYDVPGGRPMRNATCTSIAPTGTLSIIAGVSSGIEPSFAMVFVRNILDGENLLEINPY 471
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
G S + K++ + + +P+ LK + T I+ + + +
Sbjct: 472 FEEMARREGFHSKELFEKLV-SSNHLHDMECVPDWLKRLLVTAHRIRPEWHIRIQAAFQK 530
Query: 720 YIDHSQSLNIHMD-QPNFGKLTSLHFHAWLRGLKTGMYYLR--SRAA 763
Y D++ S ++ + + ++ A+ +GLK G+ R SRAA
Sbjct: 531 YTDNAVSKTVNFSHEATREDMANVFNLAYDKGLK-GITVYRDGSRAA 576
Score = 89 (36.4 bits), Expect = 2.4e-44, Sum P(4) = 2.4e-44
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 382 KVVQAQNLW--FEILKSQI-ETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSP 438
+VVQ N F+ + Q +TG P ++F D N + LG I+ + C E Q P
Sbjct: 234 EVVQRLNAACVFDCIVDQAWKTGDPGLVFIDRINDDNPTPELGRIRHVSGCGE--QTLLP 291
Query: 439 TETAVCNLASIALPRYVREMG 459
E+ CNL SI+LPR ++ G
Sbjct: 292 YES--CNLGSISLPRMLKRDG 310
>TIGR_CMR|ECH_0459 [details] [associations]
symbol:ECH_0459 "ribonucleoside-diphosphate reductase,
alpha subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013346
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006260 eggNOG:COG0209 KO:K00525
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02506
HOGENOM:HOG000064500 ProtClustDB:PRK09102 RefSeq:YP_507276.1
STRING:Q2GH07 GeneID:3927177 KEGG:ech:ECH_0459 PATRIC:20576390
OMA:GALEKSI BioCyc:ECHA205920:GJNR-460-MONOMER Uniprot:Q2GH07
Length = 595
Score = 290 (107.1 bits), Expect = 6.2e-43, Sum P(2) = 6.2e-43
Identities = 89/289 (30%), Positives = 143/289 (49%)
Query: 168 QHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDS 227
Q + +R++ + D+ + A + Y MSQ WF A+P L N GT R SCFL +DS
Sbjct: 34 QQLFVRISE-YYSDNPEHAQRLYDYMSQLWFMPATPILSNGGTNRGLPVSCFLN-ETEDS 91
Query: 228 IEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
+ GI + E ++ GGIG N+R+ G +RG+ TS GI+P + V N +
Sbjct: 92 LRGIVNLWNENVWLASKGGGIGSYWGNLRSIGEKVRGSGKTS-GIIPFIVVQNALTLAIS 150
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHR-ARDLFYALWVPDLFMERVQSNG 346
QG R+G+ AVYL WH +I EFLDLRK G + +R A ++ + + + + FM+ V+++
Sbjct: 151 QGS-LRRGSSAVYLPVWHPEIEEFLDLRKPTGGDPNRKALNIHHGVVLSNKFMKCVENDE 209
Query: 347 LWSLFCPNEAPGLADCWGTE-FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYM 405
W L P + L + + ++ T + G+ + + Q++ P
Sbjct: 210 PWDLISPKDQSVLFTIKARDIWIKILTTRVETGEP----------YILFIDQVDNNKPE- 258
Query: 406 LFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRY 454
++K N NL T L T + + + TA+C LAS+ L Y
Sbjct: 259 IYK-RLNLDIKMSNLCT--EITLTTGY-DHLNKSRTAICCLASLNLEYY 303
Score = 244 (91.0 bits), Expect = 6.2e-43, Sum P(2) = 6.2e-43
Identities = 63/178 (35%), Positives = 101/178 (56%)
Query: 614 NSLLVAPMPTASTSQILGNNEC-FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSP 672
N L +AP TAS S I GN EPY +N+++ + L+G F+V NK L L G +
Sbjct: 414 NKLSIAP--TASISIIAGNTSPGIEPYAANVFTHKTLTGSFIVRNKFLQKLLKLKGKDNE 471
Query: 673 IIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMD 732
+ + I ++GSVQ + + EE K I+KT +E+ Q+ +++ DR YI +QS+NI +
Sbjct: 472 QVWSSISTNEGSVQHLDFLTEEEKLIFKTAYELDQRWIIEHTSDRSKYICQAQSVNIFLP 531
Query: 733 QPNFGK--LTSLHFHAWLRGLKTGMYYLRSRAA--ADAIKFTVDTSVLKENPKVTDDD 786
N K L +HF AW +GLK+ +YY RS++ AD + +++ ++T+ D
Sbjct: 532 A-NVHKRYLHKIHFLAWRKGLKS-LYYCRSKSIQRADKVSHGALEKSIEQYKQITNFD 587
Score = 164 (62.8 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 58/191 (30%), Positives = 89/191 (46%)
Query: 384 VQAQNLWFEILKSQIETGTPYMLFKDTC--NKKSNQQNLGT-IKSSNLCTEVIQYTSPTE 440
++A+++W +IL +++ETG PY+LF D NK + L IK SNLCTE+ T
Sbjct: 225 IKARDIWIKILTTRVETGEPYILFIDQVDNNKPEIYKRLNLDIKMSNLCTEITLTTGYDH 284
Query: 441 TAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKII 500
A L + +E + + N F + + + ++T+ + K
Sbjct: 285 LNKSRTAICCLA------SLNLEYY------EQWKDNSLFIEDVMRFLDNVLTDFIEKAP 332
Query: 501 DVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM-PFDSTEAQQLNKDIFETIYYHAL 559
+E A+ S +R R IG+GV G +F+ M PF+S A NK IF I HA
Sbjct: 333 S----EMERAKYSAMRERSIGVGVMGF-HSFLQSKMIPFESVAATIWNKKIFSHIRKHAD 387
Query: 560 RTSSEIAAREG 570
S IA +G
Sbjct: 388 AASYNIAMEKG 398
>UNIPROTKB|H0YCY7 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 GO:GO:0005971
GO:GO:0004748 SUPFAM:SSF48168 HGNC:HGNC:10451 ChiTaRS:RRM1
EMBL:AC015689 Ensembl:ENST00000528442 Uniprot:H0YCY7
Length = 130
Score = 460 (167.0 bits), Expect = 6.4e-43, P = 6.4e-43
Identities = 86/105 (81%), Positives = 97/105 (92%)
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGI 248
TY+++S+RWFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+ISKSAGGI
Sbjct: 2 TYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGI 61
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKR 293
GV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR
Sbjct: 62 GVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKR 106
>TIGR_CMR|CHY_0676 [details] [associations]
symbol:CHY_0676 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent, intein-containing" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0015949 "nucleobase-containing small molecule interconversion"
evidence=ISS] InterPro:IPR000788 InterPro:IPR004042
InterPro:IPR006141 InterPro:IPR006142 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR00379 PROSITE:PS50817 PROSITE:PS50819 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260
GO:GO:0004519 GO:GO:0031419 InterPro:IPR003587 SMART:SM00306
GO:GO:0016539 TIGRFAMs:TIGR01445 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
RefSeq:YP_359531.1 STRING:Q3AEA3 GeneID:3727979 KEGG:chy:CHY_0676
PATRIC:21274485 OMA:IFDAVKH BioCyc:CHYD246194:GJCN-676-MONOMER
Uniprot:Q3AEA3
Length = 1101
Score = 299 (110.3 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 91/270 (33%), Positives = 139/270 (51%)
Query: 149 KTLERSYLLKVQ-GKVVERPQHMLMRVAVGI--------HKDDIDSAIKTYHMMSQRWFT 199
K LE YL + + G+V+E P+ M RVA I D+ + A + Y+ M+ F
Sbjct: 10 KVLEARYLARNEKGEVIETPEEMFWRVARAIAQAEKNYAENDEEEIAREFYNFMTALDFL 69
Query: 200 HASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATG 259
+PTL NAG P QLS+CF++ + DS+E I+D +K A+I KS GG G S +RA G
Sbjct: 70 PNTPTLVNAGRPLGQLSACFVLPV-GDSMEEIFDAVKYSALIHKSGGGTGFSFSRLRAKG 128
Query: 260 SYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHG 319
+ +R T G ++G V ++VFN V QGG R+GA L H DI EF+
Sbjct: 129 ARVRSTGGIASGPVSFMKVFNAATEAVKQGG-VRRGANMGVLRCDHPDILEFIT-----A 182
Query: 320 KEEHRARDLF-YALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTE-FERLYTKYEKE 377
KE++R F ++ + D FM+ ++ +G + L P+ + E FER+ K
Sbjct: 183 KEDNRDITNFNISVALTDKFMKALEEDGEYELIEPSTGEVVGRLRAREVFERIARNAWKN 242
Query: 378 GKAKKV----VQAQNLWFEILKSQIETGTP 403
G+ + + A N+ E+ +IE+ P
Sbjct: 243 GEPGVIFIDRINAANVVPEL--GEIESTNP 270
Score = 157 (60.3 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 476 KNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
K+ D+E L + + L+ +IDVN+YP+ + + R IG+GV G AD I L
Sbjct: 639 KDGEIDWEHLEKTVKLAVRFLDNVIDVNHYPLPEIEKMTKKTRKIGLGVMGFADMLIKLN 698
Query: 536 MPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSP-VSKGI 584
+P+DS EA L + E I + S+E+A G + + S KG+
Sbjct: 699 IPYDSEEALNLADKVMEFINKKSKEASAELARVRGTFPAWKKSVWAKKGL 748
Score = 104 (41.7 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 39/150 (26%), Positives = 68/150 (45%)
Query: 608 SKNGV--RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV-VNKHLLHDL 664
+K G+ RN+ PT S S I G + EP + + R +L + +V V++
Sbjct: 744 AKKGLKLRNATTTTIAPTGSISIIAGVSSGIEPVFALAFKRHILDRKDIVEVHRLFEQHA 803
Query: 665 TEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHS 724
E G +S + N++ G + I +PEE K ++ T +I + V M + D++
Sbjct: 804 RENGYYSEKLMNEVA-KTGRITGIAGVPEEAKRLFVTALDIAPEWHVKMQAVFQKHTDNA 862
Query: 725 QSLNIHMDQPNFGKLTSLHFHAWLRGLKTG 754
S I+M PN + + ++L K G
Sbjct: 863 VSKTINM--PNSATVEDVK-ESYLLAYKLG 889
Score = 58 (25.5 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 384 VQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLC 429
++A+ ++ I ++ + G P ++F D N + LG I+S+N C
Sbjct: 226 LRAREVFERIARNAWKNGEPGVIFIDRINAANVVPELGEIESTNPC 271
Score = 40 (19.1 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 444 CNLASIALPRYVREMGVPMESHPSKLV 470
CNL SI L V++ + E H K V
Sbjct: 627 CNLGSINLANMVKDGEIDWE-HLEKTV 652
>TIGR_CMR|GSU_1871 [details] [associations]
symbol:GSU_1871 "ribonucleoside-diphosphate reductase,
putative" species:243231 "Geobacter sulfurreducens PCA" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009265 "2'-deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013344 InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867
PRINTS:PR01183 UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0031419
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH ProtClustDB:PRK08665 RefSeq:NP_952920.1
ProteinModelPortal:Q74C05 GeneID:2686773 KEGG:gsu:GSU1871
PATRIC:22026607 BioCyc:GSUL243231:GH27-1839-MONOMER Uniprot:Q74C05
Length = 743
Score = 260 (96.6 bits), Expect = 7.6e-38, Sum P(3) = 7.6e-38
Identities = 85/288 (29%), Positives = 142/288 (49%)
Query: 151 LERSYLLK-VQGKVVERPQHMLMRVAVGI--------HKDDIDS-AIKTYHMMSQRWFTH 200
LE+ YL + G V+E P M RVA I K D+ + A + Y +M+ F
Sbjct: 22 LEKRYLKRDTGGNVLETPVDMFQRVARSIAEADKNFDKKADVKALAAQFYELMTSFEFLP 81
Query: 201 ASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGS 260
SPTL NAG QLS+CF++ + DS+E I+D +K A+I KS GG G S +R
Sbjct: 82 NSPTLMNAGRELGQLSACFVLPV-GDSMEDIFDAVKYTALIHKSGGGTGFSFSRLRPAHD 140
Query: 261 YIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK 320
+R T+G S+G + +RVF+ + QGG R+GA L H DI +F+ + +
Sbjct: 141 VVRSTSGISSGPISFMRVFDAATETIKQGG-TRRGANMGILRVDHPDIMDFIMCKDD--- 196
Query: 321 EEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKA 380
++H + ++ + + FME V+ + + L P + C +++++ K+ A
Sbjct: 197 QKH-LNNFNISVGLTEAFMEAVERDADYDLINPRDGK---PCGTLNARKVFSRIVKQ--A 250
Query: 381 KKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNL 428
K + ++ + L + TP++ ++ N +Q L +S NL
Sbjct: 251 WKNGEPGIIFLDRLNK--DNPTPHVGVIESTNP-CGEQPLLPYESCNL 295
Score = 151 (58.2 bits), Expect = 7.6e-38, Sum P(3) = 7.6e-38
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 476 KNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLG 535
KN ++++L +V + L+ +I+VN YP+ +R IG+GV G AD ILLG
Sbjct: 305 KNGDVNWDRLRDVVRLAVHFLDNVIEVNNYPLPQISEMTRANRKIGLGVMGWADMLILLG 364
Query: 536 MPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGS 578
+P++S +A L + + I S E+AA G + + GS
Sbjct: 365 IPYNSPQAISLGEKVMRFINDEGHVYSRELAAVRGSFPNFAGS 407
Score = 126 (49.4 bits), Expect = 7.6e-38, Sum P(3) = 7.6e-38
Identities = 42/193 (21%), Positives = 89/193 (46%)
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
G + D S+ +RN+ + PT + S I + EP + + R+VL +V +
Sbjct: 406 GSIYDRASEGPIRNATVTTIAPTGTISIIANASSGVEPLFAVSFIRQVLDKNILVEVNPI 465
Query: 661 LHDLT-EMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
++ + G +S + KI G++ +P+IPE+++ I+ T +I + ++M
Sbjct: 466 FEEVARQRGFYSEELMQKIARH-GTIHDLPEIPEDIRKIFVTAHDITPEDHIEMQAAFQK 524
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLH--FH-AWLRGLKTGMYYLRSRAAADAIKFTVDTSVL 776
Y D++ S ++ PN + + + A+ G K G+ R + + + + T V
Sbjct: 525 YTDNAVSKTVNF--PNSAAIEDVEKVYRLAYKSGCK-GVTIYRDGSRDEQV---LSTGVK 578
Query: 777 KENPKVTDDDDAK 789
++ KV ++ +
Sbjct: 579 EDKEKVVQTEEKR 591
Score = 104 (41.7 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 376 KEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQY 435
++GK + A+ ++ I+K + G P ++F D NK + ++G I+S+N C E Q
Sbjct: 229 RDGKPCGTLNARKVFSRIVKQAWKNGEPGIIFLDRLNKDNPTPHVGVIESTNPCGE--QP 286
Query: 436 TSPTETAVCNLASIALPRYVR 456
P E+ CNL SI L + V+
Sbjct: 287 LLPYES--CNLGSINLGKMVK 305
>UNIPROTKB|P39452 [details] [associations]
symbol:nrdE species:83333 "Escherichia coli K-12"
[GO:0005737 "cytoplasm" evidence=ISA] [GO:0015949
"nucleobase-containing small molecule interconversion"
evidence=IGI] [GO:0004748 "ribonucleoside-diphosphate reductase
activity, thioredoxin disulfide as acceptor" evidence=IEA;IGI]
[GO:0005971 "ribonucleoside-diphosphate reductase complex"
evidence=IEA;IGI] [GO:0009263 "deoxyribonucleotide biosynthetic
process" evidence=IGI] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006260 GO:GO:0015949 GO:GO:0009263 EMBL:X79787
eggNOG:COG0209 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02506 HOGENOM:HOG000246165 OMA:VSRIEIR
ProtClustDB:PRK08188 InterPro:IPR026459 TIGRFAMs:TIGR04170
EMBL:M31530 PIR:D65047 RefSeq:NP_417161.1 RefSeq:YP_490890.1
ProteinModelPortal:P39452 SMR:P39452 DIP:DIP-359N IntAct:P39452
PRIDE:P39452 EnsemblBacteria:EBESCT00000003305
EnsemblBacteria:EBESCT00000016977 GeneID:12930227 GeneID:947155
KEGG:ecj:Y75_p2618 KEGG:eco:b2675 PATRIC:32120740 EchoBASE:EB4158
EcoGene:EG20257 BioCyc:EcoCyc:NRDE-MONOMER
BioCyc:ECOL316407:JW2650-MONOMER BioCyc:MetaCyc:NRDE-MONOMER
Genevestigator:P39452 Uniprot:P39452
Length = 714
Score = 407 (148.3 bits), Expect = 6.2e-35, P = 6.2e-35
Identities = 147/526 (27%), Positives = 237/526 (45%)
Query: 154 SYLLKV-QGK-VVERPQHMLMRVAVGIHKDDIDSAIK-TYHMMSQRWFTHASPTLFNAGT 210
SY LK GK +E + VA+ + + D A++ T M+S R F A+PT N G
Sbjct: 111 SYTLKTFDGKRYLEDFADRVTMVALTLAQGDETLALQLTDEMLSGR-FQPATPTFLNCGK 169
Query: 211 P-RAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTS 269
R +L SCFL+ + +D++E I + +SK GG+ + N+R G+ I+ S
Sbjct: 170 QQRGELVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQS 228
Query: 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLF 329
+G++P++++ D Y +Q G R+GA AVYL H DI FLD ++ + E+ R + L
Sbjct: 229 SGVIPVMKMLEDAFSYANQLGA-RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLS 287
Query: 330 YALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFE--RLYTKYEK----EGKAKKV 383
+ +PD+ + N +LF P + + +G F + Y++ E KK
Sbjct: 288 LGVVIPDITFHLAKENAQMALFSPYDVERV---YGKPFADVAISQHYDELVADERIRKKY 344
Query: 384 VQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAV 443
+ A++ + + + Q E+G PY++++DT N+ + G I SNLC+E++Q S +E
Sbjct: 345 LNARDFFQRLAEIQFESGYPYIMYEDTVNRAN--PIAGRINMSNLCSEILQVNSASEYDE 402
Query: 444 CNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVN 503
NL Y R G + + +GS + D A L + D++
Sbjct: 403 -NLD------YTRT-GHDISCN----LGSLNIAHT-MDSPDFARTVETAVRGLTAVSDMS 449
Query: 504 YY-PVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTS 562
+ V + N IG+G L G+ + S EA F I +HALRTS
Sbjct: 450 HIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRTS 509
Query: 563 SEIAAREGPYETYHGSPVSK------------GILQP------DMW---GVNPSDRWDWG 601
+A G ET+ G S+ G QP +++ G+ R W
Sbjct: 510 MLLARERG--ETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMWA 567
Query: 602 GLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647
LRD + + G+ N L A PT S S I P + + R+
Sbjct: 568 QLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRK 613
Score = 143 (55.4 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 65/293 (22%), Positives = 120/293 (40%)
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYY-PVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539
DF + E T + L + D+++ V + N IG+G L G+ +
Sbjct: 430 DFARTVE-TAV--RGLTAVSDMSHIRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYG 486
Query: 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWD 599
S EA F I +HALRTS +A G ET+ G S+ + + W
Sbjct: 487 SPEALDFTNLYFYAITWHALRTSMLLARERG--ETFAGFKQSR-YASGEYFSQYLQGNWQ 543
Query: 600 --WGGLRDMISKNGVRNSLLVAPMPTAST-SQILGNNECFEPYTSNIYSRRVLSGEFVVV 656
+ ++ +++G+ +PT +Q+ + + Y N+ + +G +
Sbjct: 544 PKTAKVGELFTRSGIT-------LPTREMWAQLRDDVMRYGIYNQNLQAVPP-TGSISYI 595
Query: 657 NKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKI----PQIPEELKAIYKTVWEIKQKTLVD 712
N H + + PI+ I +G ++ P + E A+Y+ +EI + ++D
Sbjct: 596 N----HATSSI---HPIVAKVEIRKEGKTGRVYYPAPFMTNENLALYQDAYEIGAEKIID 648
Query: 713 MAVDRGCYIDHSQSLNIHM-DQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764
+ ++D SL + D + +AW +G+KT +YY+R R A
Sbjct: 649 TYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMA 700
>UNIPROTKB|P0A5W8 [details] [associations]
symbol:nrdE "Ribonucleoside-diphosphate reductase subunit
alpha" species:1773 "Mycobacterium tuberculosis" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] [GO:0051063 "CDP reductase
activity" evidence=IDA] [GO:0055114 "oxidation-reduction process"
evidence=IDA] InterPro:IPR000788 InterPro:IPR008926
InterPro:IPR013346 InterPro:IPR013509 InterPro:IPR013554
Pfam:PF00317 Pfam:PF02867 Pfam:PF08343 PRINTS:PR01183
PROSITE:PS00089 UniPathway:UPA00326 GO:GO:0005886 GO:GO:0005524
GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842581 GO:GO:0009263
eggNOG:COG0209 KO:K00525 GO:GO:0005971 SUPFAM:SSF48168
TIGRFAMs:TIGR02506 EMBL:L34407 PIR:F70861 RefSeq:NP_217567.1
RefSeq:NP_337654.1 ProteinModelPortal:P0A5W8 SMR:P0A5W8
EnsemblBacteria:EBMYCT00000003419 EnsemblBacteria:EBMYCT00000070027
GeneID:888869 GeneID:923996 KEGG:mtc:MT3137 KEGG:mtu:Rv3051c
PATRIC:18128658 TubercuList:Rv3051c HOGENOM:HOG000246165
OMA:VSRIEIR ProtClustDB:PRK08188 GO:GO:0051063 InterPro:IPR026459
TIGRFAMs:TIGR04170 Uniprot:P0A5W8
Length = 725
Score = 401 (146.2 bits), Expect = 3.1e-34, P = 3.1e-34
Identities = 138/523 (26%), Positives = 237/523 (45%)
Query: 154 SYLLKV-QGK-VVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTP 211
SY LK GK +ER + ++ VA+ + D A + F A+PT N+G
Sbjct: 122 SYTLKTFDGKRYLERFEDRVVMVALTLAAGDTALAELLVDEIIDGRFQPATPTFLNSGKK 181
Query: 212 -RAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSN 270
R + SCFL+ + +D++E I ++ +SK GG+ + + NIR G+ I+ S+
Sbjct: 182 QRGEPVSCFLLRV-EDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSS 240
Query: 271 GIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFY 330
G++P++++ D Y +Q G R+GA AVYL H DI+ FLD ++ + E+ R + L
Sbjct: 241 GVIPIMKLLEDAFSYANQLGA-RQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSL 299
Query: 331 ALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEF------ERLYTKYEKEGKAKKVV 384
+ +PD+ E + N LF P + + +G F E+ Y + K +
Sbjct: 300 GVVIPDITFELAKRNDDMYLFSPYDVERV---YGVPFADISVTEKYYEMVDDARIRKTKI 356
Query: 385 QAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVC 444
+A+ + + + Q E+G PY++F+DT N+ +N + G I SNLC+E++Q ++P+
Sbjct: 357 KAREFFQTLAELQFESGYPYIMFEDTVNR-ANPID-GKITHSNLCSEILQVSTPS----- 409
Query: 445 NLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNY 504
L + L Y + +G + + +GS + D A+ + L + D +
Sbjct: 410 -LFNEDLS-YAK-VGKDISCN----LGSLNIA-KTMDSPDFAQTIEVAIRALTAVSDQTH 461
Query: 505 YP-VETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSS 563
V + + N IG+G L + + S E F T+ YHALR S+
Sbjct: 462 IKSVPSIEQGNNDSHAIGLGQMNLHGYLARERIFYGSDEGIDFTNIYFYTVLYHALRASN 521
Query: 564 EIAAREGP-YETYHGSPVSKGIL----QPDMW--------------GVNPSDRWDWGGLR 604
IA G ++ + S + G +W G+ + DW L+
Sbjct: 522 RIAIERGTHFKGFERSKYASGEFFDKYTDQIWEPKTQKVRQLFADAGIRIPTQDDWRRLK 581
Query: 605 DMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647
+ + +G+ N L A PT S S I + P S + R+
Sbjct: 582 ESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRK 624
Score = 126 (49.4 bits), Expect = 0.00034, P = 0.00034
Identities = 64/302 (21%), Positives = 116/302 (38%)
Query: 474 GSKN--RYFDFEKLAEVTGIVTENLNKIIDVNYYP-VETARRSNLRHRPIGIGVQGLADT 530
GS N + D A+ + L + D + V + + N IG+G L
Sbjct: 429 GSLNIAKTMDSPDFAQTIEVAIRALTAVSDQTHIKSVPSIEQGNNDSHAIGLGQMNLHGY 488
Query: 531 FILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMW 590
+ + S E F T+ YHALR S+ IA G + + G SK + +
Sbjct: 489 LARERIFYGSDEGIDFTNIYFYTVLYHALRASNRIAIERGTH--FKGFERSK-YASGEFF 545
Query: 591 GVNPSDRWD--WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNN-ECFEPYTSNIYSRR 647
W+ +R + + G+R +PT + L + + Y N+ +
Sbjct: 546 DKYTDQIWEPKTQKVRQLFADAGIR-------IPTQDDWRRLKESVQAHGIYNQNLQAVP 598
Query: 648 VLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKI----PQIPEELKAIYKTVW 703
+G +N H + + PI+ I +G + ++ P + + Y+ +
Sbjct: 599 P-TGSISYIN----HSTSSI---HPIVSKVEIRKEGKIGRVYYPAPYMTNDNLEYYEDAY 650
Query: 704 EIKQKTLVDMAVDRGCYIDHSQSLNIHM-DQPNFGKLTSLHFHAWLRGLKTGMYYLRSRA 762
EI + ++D ++D SL + D + +AW +G+KT +YY+R R
Sbjct: 651 EIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKT-LYYIRLRQ 709
Query: 763 AA 764
A
Sbjct: 710 MA 711
>UNIPROTKB|Q0C1X7 [details] [associations]
symbol:HNE_1555 "Ribonucleoside-diphosphate reductase"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 GO:GO:0006260 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0031419 GO:GO:0009265 eggNOG:COG0209 KO:K00525 OMA:QMATFDI
GO:GO:0005971 GO:GO:0004748 TIGRFAMs:TIGR02504 InterPro:IPR024434
Pfam:PF12637 RefSeq:YP_760266.1 STRING:Q0C1X7 GeneID:4287134
KEGG:hne:HNE_1555 PATRIC:32215933 HOGENOM:HOG000229278
ProtClustDB:CLSK2780972 BioCyc:HNEP228405:GI69-1588-MONOMER
Uniprot:Q0C1X7
Length = 731
Score = 201 (75.8 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 57/184 (30%), Positives = 93/184 (50%)
Query: 467 SKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQG 526
++LV S + + +L +T L+ +ID++ YP+E R +G+GV G
Sbjct: 286 ARLVSSPFEADAKIELTELETLTETAIRFLDNVIDISRYPLEQQGEEARAKRRLGLGVTG 345
Query: 527 LADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGIL- 585
LAD I G + S +A L++ I A R S+ +AA +GPY + K IL
Sbjct: 346 LADALIFCGAAYGSDKAVALSERWMGAIKRAAYRASAHLAAEKGPYPLF-----DKAILD 400
Query: 586 QPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIY 644
+P++ G++P R +IS++G+RN L + PT +TS + N + EP + Y
Sbjct: 401 RPNLLGLDPDTR-------ALISEHGLRNGCLTSIAPTGTTSLLADNVSSGVEPVFAFSY 453
Query: 645 SRRV 648
SR+V
Sbjct: 454 SRKV 457
Score = 169 (64.5 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 43/154 (27%), Positives = 78/154 (50%)
Query: 198 FTHASPTLFNAGTPR-AQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIR 256
F A L AGT R L +CF++ D++ GI++ L+E A+ + GG+G+ IR
Sbjct: 64 FIPAGRILAGAGTARNVTLFNCFVMGTLPDNLPGIFEHLREAAVTLQQGGGVGMDFSTIR 123
Query: 257 ATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRK 316
+G+ + G ++G + + ++ R + G+R+GA L H DI F+D ++
Sbjct: 124 PSGAPVMGVGAQASGPLSFMDTWDAMCRTI-MSAGQRRGAMMGCLRIDHPDIEAFIDAKR 182
Query: 317 NHGKEEHRARDLFYALWVPDLFMERVQSNGLWSL 350
+ R R+ ++ V D FM +++ W+L
Sbjct: 183 DGA----RFRNFNLSVLVTDEFMAALEAGRDWTL 212
Score = 89 (36.4 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 378 GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTS 437
G+ + + A LW ++++ + P ++F D N +N ++ TI +SN C E Q
Sbjct: 216 GQPYRSLPASGLWDRLMQATYDAAEPGVIFVDRVNALNNLADIETISASNPCGE--QMLP 273
Query: 438 PTETAVCNLASIALPRYV 455
P C L SI L R V
Sbjct: 274 PY--GACLLGSINLARLV 289
>UNIPROTKB|O53767 [details] [associations]
symbol:nrdZ "Ribonucleoside-diphosphate reductase NrdZ"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000788
InterPro:IPR008926 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 PROSITE:PS00089
UniPathway:UPA00326 Pfam:PF03477 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006260 EMBL:BX842573 GO:GO:0031419
InterPro:IPR005144 PROSITE:PS51161 PIR:A70933 RefSeq:NP_215084.1
RefSeq:NP_335005.1 RefSeq:YP_006513903.1 ProteinModelPortal:O53767
SMR:O53767 PRIDE:O53767 EnsemblBacteria:EBMYCT00000000981
EnsemblBacteria:EBMYCT00000071101 GeneID:13318445 GeneID:887666
GeneID:924988 KEGG:mtc:MT0596 KEGG:mtu:Rv0570 KEGG:mtv:RVBD_0570
PATRIC:18123012 TubercuList:Rv0570 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 OMA:QMATFDI ProtClustDB:CLSK790600
GO:GO:0005971 GO:GO:0004748 SUPFAM:SSF48168 TIGRFAMs:TIGR02504
Uniprot:O53767
Length = 692
Score = 215 (80.7 bits), Expect = 2.1e-28, Sum P(3) = 2.1e-28
Identities = 51/156 (32%), Positives = 83/156 (53%)
Query: 198 FTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRA 257
F SPTL N+GT L+ CF++ + +DS++ I+ TL + A + ++ GG G + ++R
Sbjct: 173 FLPNSPTLMNSGTDLGLLAGCFVLPI-EDSLQSIFATLGQAAELQRAGGGTGYAFSHLRP 231
Query: 258 TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKN 317
G + T GT++G V LR+++ A V GG +R+GA L+ H DI +F+ +
Sbjct: 232 AGDRVASTGGTASGPVSFLRLYDSAAGVVSMGG-RRRGACMAVLDVSHPDICDFVTAKAE 290
Query: 318 HGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCP 353
E ++ V D F+ V+ NGL L P
Sbjct: 291 SPSELPHFN---LSVGVTDAFLRAVERNGLHRLVNP 323
Score = 147 (56.8 bits), Expect = 2.1e-28, Sum P(3) = 2.1e-28
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
D+++L EV G+ L+ +IDV+ YP + R IG+GV GLA+ LG+P+DS
Sbjct: 405 DWDRLEEVAGVAVRFLDDVIDVSRYPFPELGEAARATRKIGLGVMGLAELLAALGIPYDS 464
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGS 578
EA +L + I A S +A G + + S
Sbjct: 465 EEAVRLATRLMRRIQQAAHTASRRLAEERGAFPAFTDS 502
Score = 87 (35.7 bits), Expect = 9.1e-15, Sum P(3) = 9.1e-15
Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 354 NEAPGLADCWGTEFER--LYTKYE-KEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDT 410
N + G+ D + ER L+ + GK + A L+ I K+ G P ++F DT
Sbjct: 299 NLSVGVTDAFLRAVERNGLHRLVNPRTGKIVARMPAAELFDAICKAAHAGGDPGLVFLDT 358
Query: 411 CNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVRE 457
N+ + G I+++N C EV P E+ CNL SI L R + +
Sbjct: 359 INRANPVPGRGRIEATNPCGEVPLL--PYES--CNLGSINLARMLAD 401
Score = 86 (35.3 bits), Expect = 2.1e-28, Sum P(3) = 2.1e-28
Identities = 32/142 (22%), Positives = 63/142 (44%)
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSP 672
RN+ + + PT + S I G EP + ++R ++ + VN + G +
Sbjct: 511 RNAQVTSVAPTGTISLIAGTTAGIEPMFAIAFTRAIVGRHLLEVNPCFDRLARDRGFYRD 570
Query: 673 IIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDM--AVDRGCYIDHSQSLNIH 730
+ +I G V+ P++P E++A + T EI + + M AV R S+++N+
Sbjct: 571 ELIAEIA-QRGGVRGYPRLPAEVRAAFPTAAEIAPQWHLRMQAAVQRHVEAAVSKTVNLP 629
Query: 731 MDQPNFGKLTSLHFHAWLRGLK 752
+ +++ AW +K
Sbjct: 630 ATA-TVDDVRAIYVAAWKAKVK 650
>TIGR_CMR|SPO_3194 [details] [associations]
symbol:SPO_3194 "ribonucleoside-diphosphate reductase,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009263
"deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR013344 InterPro:IPR013509
Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183 UniPathway:UPA00326
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260
GO:GO:0031419 KO:K00525 OMA:QMATFDI GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
HOGENOM:HOG000229278 RefSeq:YP_168397.1 ProteinModelPortal:Q5LNK9
GeneID:3192944 KEGG:sil:SPO3194 PATRIC:23379835
ProtClustDB:CLSK934086 Uniprot:Q5LNK9
Length = 760
Score = 180 (68.4 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 208 AGTPR-AQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTN 266
AGT R L +CF++ DS+ GI++ LKE A+ + GGIG IR G+ ++G
Sbjct: 75 AGTARQVTLFNCFVMGTIPDSMGGIFEMLKEAALTMQQGGGIGYDFSTIRPRGADVKGVA 134
Query: 267 GTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRAR 326
++G + + V++ R + G R+GA + H DI +F+ + + R R
Sbjct: 135 ADASGPLSFMDVWDAMCRTI-MSAGSRRGAMMATMRCDHPDIEQFIGAKSDPA----RLR 189
Query: 327 DLFYALWVPDLFMERVQSNGLWSL 350
++ V D FME V+++G W L
Sbjct: 190 MFNMSVLVTDAFMEAVKADGSWEL 213
Score = 167 (63.8 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 50/185 (27%), Positives = 89/185 (48%)
Query: 467 SKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPV-ETARRSNLRHRPIGIGVQ 525
++LV + D E L ++ ++ ++D + +P+ E A + + R IG+GV
Sbjct: 287 ARLVSNPFEDAAELDPEALQKLVATAVRMMDNVVDASRFPLPEQAAEAQNKRR-IGLGVT 345
Query: 526 GLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGIL 585
GLAD ++LG+ + S EA + +D I A S E+A +G + + K +
Sbjct: 346 GLADALLMLGLRYGSDEAAKQTEDWLHAIARAAYLASVELAKEKGAFPLFDAE---KYLA 402
Query: 586 QPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIY 644
M ++ +R+ I +G+RN+LL + PT + S GN + EP + Y
Sbjct: 403 SGTMRAMDED-------VREAIRTHGIRNALLTSIAPTGTISLYAGNVSSGIEPVFAYAY 455
Query: 645 SRRVL 649
+R+VL
Sbjct: 456 TRKVL 460
Score = 93 (37.8 bits), Expect = 3.9e-27, Sum P(3) = 3.9e-27
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 377 EGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYT 436
+GK V+A+ LW +I+++ + P ++F D N +N + TI ++N C E Q
Sbjct: 216 DGKVYHTVEARTLWNKIMQATYDYAEPGVIFIDRINAANNLNYVETIAATNPCGE--QPL 273
Query: 437 SPTETAVCNLASIALPRYV 455
P C L S+ L R V
Sbjct: 274 PPY--GACLLGSVNLARLV 290
>UNIPROTKB|E9PP77 [details] [associations]
symbol:RRM1 "Ribonucleoside-diphosphate reductase large
subunit" species:9606 "Homo sapiens" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=IEA] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000788
Pfam:PF02867 GO:GO:0006260 GO:GO:0005971 GO:GO:0004748
HGNC:HGNC:10451 ChiTaRS:RRM1 EMBL:AC015689 IPI:IPI00976088
ProteinModelPortal:E9PP77 SMR:E9PP77 Ensembl:ENST00000533495
ArrayExpress:E9PP77 Bgee:E9PP77 Uniprot:E9PP77
Length = 75
Score = 308 (113.5 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 59/70 (84%), Positives = 65/70 (92%)
Query: 223 MKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
MKDDSIEGIYDTLK+CA+ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+T
Sbjct: 1 MKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNT 60
Query: 283 ARYVDQGGGK 292
ARYVDQGG K
Sbjct: 61 ARYVDQGGNK 70
>TIGR_CMR|DET_0244 [details] [associations]
symbol:DET_0244 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 RefSeq:YP_180992.1
ProteinModelPortal:Q3Z9V7 STRING:Q3Z9V7 GeneID:3230414
KEGG:det:DET0244 PATRIC:21607559 OMA:SANFGIN ProtClustDB:CLSK741634
BioCyc:DETH243164:GJNF-244-MONOMER Uniprot:Q3Z9V7
Length = 585
Score = 167 (63.8 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 62/213 (29%), Positives = 98/213 (46%)
Query: 151 LERSYLLKV-QGKVVERPQHMLMRVA--VGIHKDDIDSAIKT-------YHMMSQRWFTH 200
LE+ YL + G + E + M RVA V ++ + K Y MM+ F
Sbjct: 11 LEKRYLKRDGDGNIAESSEDMFRRVADTVAAAENAYNPPGKAACMAEEFYGMMTGFEFLP 70
Query: 201 ASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGS 260
SPTL NAG LSSCF++ + D S+ GI + E +I + GG G + IR
Sbjct: 71 NSPTLLNAGRELGLLSSCFVLPVAD-SVAGIAKAVGEAMVIHQYGGGTGFAFDAIRPEDD 129
Query: 261 YIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK 320
++ + + G V ++ VF++ Y+ Q G R G + L H DI +F+ K+ G
Sbjct: 130 PVKSGHKVAGGPVRLVGVFSEAVNYIKQAG-VRCGCNSASLPVNHPDILKFIRA-KDEGS 187
Query: 321 EEHRARDLFYALWVPDLFMERVQSNGLWSLFCP 353
H A + + + D F+ +V+ + L P
Sbjct: 188 --HSA-NFGINIALTDDFIRKVRRGEDYELVNP 217
Score = 121 (47.7 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
D+ +L + L+ +++VN YP ++ R IG+G G A+ I LG+ +DS
Sbjct: 303 DYPRLGGLIAKAVRFLDDVLEVNRYPSAEVEKAARATRKIGLGFMGFAEMLIKLGIRYDS 362
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGS 578
EA ++ + A + + E+A G + + GS
Sbjct: 363 AEAVSAADELMAFVKEAACQATEELALERGAFPAFAGS 400
Score = 96 (38.9 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 35/143 (24%), Positives = 64/143 (44%)
Query: 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLT-EMGLWS 671
RN+ + T +TS I + P S + R +L G+ ++ H + E G +S
Sbjct: 411 RNATCLTFTNTGTTSIIADTSVGIHPIYSLVMVRNILDGQRLLDINHAFEETARERGFFS 470
Query: 672 PIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDH--SQSLNI 729
P + K++ + S P+IPE+ + + T +I+ + + + Y D+ SQ++N
Sbjct: 471 PALIEKLLTGE-SPCNCPEIPEDYRRLLVTARDIQPEWCIRVQAAFQKYTDNAISQTVNF 529
Query: 730 HMDQPNFGKLTSLHFHAWLRGLK 752
D + + L A GLK
Sbjct: 530 PADA-SVEDIADLFLKAHELGLK 551
Score = 78 (32.5 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 376 KEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLC--TEVI 433
+ G+ + A +++ I +S ETG P ++F D NK + LG +++ C ++
Sbjct: 218 RTGRVSGSLSAAEVFYRIARSSWETGDPGIMFIDRINKDNPTPRLGEFITTDPCGGQPLL 277
Query: 434 QYTSPTETAVCNLASIAL 451
Y S T + NL+ + L
Sbjct: 278 PYESATLGTI-NLSGMLL 294
Score = 39 (18.8 bits), Expect = 3.0e-12, Sum P(4) = 3.0e-12
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 357 PGLADCWGTEFERLYTKYE 375
PG A C EF + T +E
Sbjct: 49 PGKAACMAEEFYGMMTGFE 67
>TIGR_CMR|DET_0345 [details] [associations]
symbol:DET_0345 "ribonucleotide reductase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004748
"ribonucleoside-diphosphate reductase activity, thioredoxin
disulfide as acceptor" evidence=ISS] [GO:0009265
"2'-deoxyribonucleotide biosynthetic process" evidence=ISS]
InterPro:IPR000788 InterPro:IPR008926 InterPro:IPR013344
InterPro:IPR013509 Pfam:PF00317 Pfam:PF02867 PRINTS:PR01183
UniPathway:UPA00326 GO:GO:0005524 GO:GO:0006260 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0031419 eggNOG:COG0209
HOGENOM:HOG000229277 KO:K00525 GO:GO:0005971 GO:GO:0004748
SUPFAM:SSF48168 TIGRFAMs:TIGR02504 InterPro:IPR024434 Pfam:PF12637
OMA:IFDAVKH RefSeq:YP_181092.1 ProteinModelPortal:Q3Z9K7
STRING:Q3Z9K7 GeneID:3230364 KEGG:det:DET0345 PATRIC:21607759
ProtClustDB:PRK08665 BioCyc:DETH243164:GJNF-345-MONOMER
Uniprot:Q3Z9K7
Length = 761
Score = 259 (96.2 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 97/312 (31%), Positives = 150/312 (48%)
Query: 151 LERSYLLK-VQGKVVERPQHMLMRVA----VG--IH--KDDIDSAI-KTYHMMSQRWFTH 200
LER YL K QGK E + M RVA +G I+ K D+ S + Y++M++ F
Sbjct: 30 LERRYLKKDKQGKPSETVEDMFRRVARTIAMGELIYNPKADVRSREDEFYNIMTRLEFLP 89
Query: 201 ASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGS 260
SPTL NAG QLS+CF++ + DDSIE I+D +K A+I KS GG G S +R
Sbjct: 90 NSPTLMNAGRELGQLSACFVLPV-DDSIESIFDAVKHTAMIHKSGGGTGFSFSRLRPEQD 148
Query: 261 YIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK 320
+ T G ++G V +R F D A V + GG R+GA L H DI +F+ H K
Sbjct: 149 RVGTTGGVASGPVSFMRAF-DVATDVIKQGGTRRGANMAILSIDHPDIMKFI-----HAK 202
Query: 321 EEHRARDLF-YALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTE-FERLYTKYEKEG 378
++ F ++ + D FM+ V+ + L P+ ++ TE F ++ K G
Sbjct: 203 DKAGVLTNFNLSVAITDKFMQAVKDGVDYDLLNPHNGEVVSRLNATEVFNKIVHMAWKTG 262
Query: 379 KAKKV----VQAQNLWFEI--LKSQIETGTPYMLFKDTCNKKS-NQQNLGTIKSSNLCTE 431
V + A N ++ ++S G +L ++CN S N + T+ +
Sbjct: 263 DPGIVFIDRINAYNPTPQLGRIESTNPCGEQPLLPYESCNLGSINLSRMVTVSGGQAVVD 322
Query: 432 VIQYTSPTETAV 443
+ + ++AV
Sbjct: 323 YKKLSRVVKSAV 334
Score = 205 (77.2 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 63/205 (30%), Positives = 97/205 (47%)
Query: 378 GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTS 437
G+ + A ++ +I+ +TG P ++F D N + LG I+S+N C E Q
Sbjct: 239 GEVVSRLNATEVFNKIVHMAWKTGDPGIVFIDRINAYNPTPQLGRIESTNPCGE--QPLL 296
Query: 438 PTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLN 497
P E+ CNL SI L R V G G D++KL+ V L+
Sbjct: 297 PYES--CNLGSINLSRMVTVSG-----------GQA-----VVDYKKLSRVVKSAVRFLD 338
Query: 498 KIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYH 557
+IDVN +P+ + R IG+GV G AD + LG+P++S + +L ++I +
Sbjct: 339 NVIDVNKFPLPQIEEMTKKSRKIGLGVMGFADMLLELGIPYNSENSIKLAEEIMCFVNEE 398
Query: 558 ALRTSSEIAAREGPYETYHGSPVSK 582
A + SSE+A G + Y GS K
Sbjct: 399 AHKFSSELAVERGVFPAYRGSIYEK 423
Score = 82 (33.9 bits), Expect = 5.1e-22, Sum P(2) = 5.1e-22
Identities = 53/227 (23%), Positives = 96/227 (42%)
Query: 591 GVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLS 650
GV P+ R G + + S +RN+ PT + S I G + EP+ + ++R +L
Sbjct: 411 GVFPAYR---GSIYEK-SGRPMRNASCTTIAPTGTLSIIAGCSSGIEPHFALCFTRNILD 466
Query: 651 G-EFVVVNKHLLHDLTEMGLWSP-IIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQK 708
G + + VN + E G +S +IK+ +G+ +P E K ++ T +I +
Sbjct: 467 GTKMIEVNPYFERAAKEGGYYSEELIKSLA---EGAHLDEADVPAEAKELFVTAHQIVPE 523
Query: 709 TLVDM-AVDRGCYIDHSQSLNIHMDQPNF-GKLTSLHFHAWLRGLKTGMYYLRSRAAADA 766
V + A + C D++ S ++ + G + ++ A LK G+ R + D
Sbjct: 524 WHVRIQAAFQKC-TDNAVSKTVNFSREAVEGDVAEVYKMAHDSNLK-GITIYRDGSREDQ 581
Query: 767 IKFT------VDTSVLKENPKVTDDDDAKMAQMVCSLTNREECMACG 807
T ++T NP + +K+ Q +T R CG
Sbjct: 582 PMSTGKAENKIETPAAVVNPNLAPRKRSKVTQ---GITERVTT-GCG 624
>UNIPROTKB|Q5LRJ1 [details] [associations]
symbol:nrdJ "Ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 122 (48.0 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 41/164 (25%), Positives = 71/164 (43%)
Query: 152 ERSYLLKVQGKVVERPQHMLMRVAVGIH-KDDIDSAIKTYHMMSQRWFTHASPTLFNAGT 210
E ++L Q PQ G+H ID + +H + + T ++
Sbjct: 131 EMRFMLATQRAAPNSPQWF----NTGLHWAYGIDGPAQGHHYVD---YKTGKLTKSDSAY 183
Query: 211 PRAQLSSCFLVCMKDDSIE--GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGT 268
Q +CF+ + DD + GI D A + K G G + ++RA G + G G
Sbjct: 184 EHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSG-GGK 242
Query: 269 SNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFL 312
S+G++ L++ + A + GG R+ A V ++ H DI +F+
Sbjct: 243 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFI 286
Score = 112 (44.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 79/334 (23%), Positives = 137/334 (41%)
Query: 378 GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTS 437
GK K V+A++LW ++ + P + F DT N G I+ SN C+E Y
Sbjct: 417 GKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSE---YMF 473
Query: 438 PTETAVCNLASIALPRYVREMGVPMES--HPSKL--VGSRGSKNR-YFDFEKLAEVT--- 489
+TA CNLAS+ L ++++ E H ++L + S F +++A+++
Sbjct: 474 LDDTA-CNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDF 532
Query: 490 ---GIVTENLNKII-DVNY-YPVETARR--SNLRHRPIGIGVQGLADTFILLGMPFDSTE 542
G+ N+ ++ ++ Y Y + R L G+ A+ LG PF E
Sbjct: 533 RTLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIAGELG-PFAGYE 591
Query: 543 AQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQ-PDMWGVNPSDRWDWG 601
N + I H RT++ + YE PV PD V + W
Sbjct: 592 RNAAN--MLRVIRNH--RTAAY--GKANGYEQLSVKPVPLDHSNCPDPRLVELAMA-SWD 644
Query: 602 GLRDMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYSRRVLSGE-FVVVNKH 659
+ KNG RN+ PT + ++ + EP + + +++ G F ++N+
Sbjct: 645 EALSLGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRS 704
Query: 660 LLHDLTEMGLWSPIIKNKIIY--DDGSVQKIPQI 691
+ L +G S I+ + Y G++ P I
Sbjct: 705 VPAALENLGYSSAQIEEIVSYAVGHGTIGNAPGI 738
>TIGR_CMR|SPO_2136 [details] [associations]
symbol:SPO_2136 "ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0004748 "ribonucleoside-diphosphate reductase activity,
thioredoxin disulfide as acceptor" evidence=ISS] [GO:0005971
"ribonucleoside-diphosphate reductase complex" evidence=ISS]
[GO:0009263 "deoxyribonucleotide biosynthetic process"
evidence=ISS] InterPro:IPR000788 InterPro:IPR013344
InterPro:IPR013678 Pfam:PF02867 Pfam:PF08471 GO:GO:0000166
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0050897
GO:GO:0031419 GO:GO:0009263 KO:K00525 GO:GO:0005971 GO:GO:0004748
TIGRFAMs:TIGR02504 Gene3D:1.10.10.200 InterPro:IPR017856
InterPro:IPR024434 Pfam:PF12637 RefSeq:YP_167364.1
ProteinModelPortal:Q5LRJ1 GeneID:3192806 KEGG:sil:SPO2136
PATRIC:23377617 HOGENOM:HOG000021770 OMA:FLWRSVP
ProtClustDB:PRK07562 Uniprot:Q5LRJ1
Length = 1214
Score = 122 (48.0 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 41/164 (25%), Positives = 71/164 (43%)
Query: 152 ERSYLLKVQGKVVERPQHMLMRVAVGIH-KDDIDSAIKTYHMMSQRWFTHASPTLFNAGT 210
E ++L Q PQ G+H ID + +H + + T ++
Sbjct: 131 EMRFMLATQRAAPNSPQWF----NTGLHWAYGIDGPAQGHHYVD---YKTGKLTKSDSAY 183
Query: 211 PRAQLSSCFLVCMKDDSIE--GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGT 268
Q +CF+ + DD + GI D A + K G G + ++RA G + G G
Sbjct: 184 EHPQPHACFIQSVSDDLVNEGGIMDLWVREARLFKYGSGTGTNFSHLRAEGESLSG-GGK 242
Query: 269 SNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFL 312
S+G++ L++ + A + GG R+ A V ++ H DI +F+
Sbjct: 243 SSGLMGFLKIGDRAAGAIKSGGTTRRAAKMVIVDADHPDIEQFI 286
Score = 112 (44.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 79/334 (23%), Positives = 137/334 (41%)
Query: 378 GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTS 437
GK K V+A++LW ++ + P + F DT N G I+ SN C+E Y
Sbjct: 417 GKVAKTVKARDLWEKVGHAAWACADPGIQFHDTVNDWHTCPADGPIRGSNPCSE---YMF 473
Query: 438 PTETAVCNLASIALPRYVREMGVPMES--HPSKL--VGSRGSKNR-YFDFEKLAEVT--- 489
+TA CNLAS+ L ++++ E H ++L + S F +++A+++
Sbjct: 474 LDDTA-CNLASMNLLTFLKDGEFQAEDYIHATRLWTLTLEISVTMAQFPSKEIAQLSYDF 532
Query: 490 ---GIVTENLNKII-DVNY-YPVETARR--SNLRHRPIGIGVQGLADTFILLGMPFDSTE 542
G+ N+ ++ ++ Y Y + R L G+ A+ LG PF E
Sbjct: 533 RTLGLGYANIGGLLMNMGYGYDSDEGRALCGALTAIMTGVAYATSAEIAGELG-PFAGYE 591
Query: 543 AQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQ-PDMWGVNPSDRWDWG 601
N + I H RT++ + YE PV PD V + W
Sbjct: 592 RNAAN--MLRVIRNH--RTAAY--GKANGYEQLSVKPVPLDHSNCPDPRLVELAMA-SWD 644
Query: 602 GLRDMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYSRRVLSGE-FVVVNKH 659
+ KNG RN+ PT + ++ + EP + + +++ G F ++N+
Sbjct: 645 EALSLGEKNGYRNAQSTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRS 704
Query: 660 LLHDLTEMGLWSPIIKNKIIY--DDGSVQKIPQI 691
+ L +G S I+ + Y G++ P I
Sbjct: 705 VPAALENLGYSSAQIEEIVSYAVGHGTIGNAPGI 738
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 808 786 0.00095 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 627 (67 KB)
Total size of DFA: 420 KB (2202 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 62.51u 0.13s 62.64t Elapsed: 00:00:03
Total cpu time: 62.53u 0.13s 62.66t Elapsed: 00:00:03
Start: Mon May 20 20:24:23 2013 End: Mon May 20 20:24:26 2013