BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003602
(808 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/811 (64%), Positives = 634/811 (78%), Gaps = 22/811 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD L
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+++YTS E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 KVTDDDDA---KMAQMVCSLTNREECMACGS 808
KV+ +++ A MVCSL NR+EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/775 (61%), Positives = 608/775 (78%), Gaps = 15/775 (1%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV KRDG++E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA+LAARI +SNLHK T K FS+ ++D+Y + N +G AP+I+DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+I+M+N +L+S I+ KTLERSYLL++ G+V ERPQH++MRVA+GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI++A++TY++MS ++FTHASPTLFNAGTP+ Q+SSCFLV MK+DSIEGIYDTLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHADIF+F+D+RKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P APGL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
DC+G EFE LYT+YEKEG+ K ++AQ LW+ IL++Q ETGTP++++KD CN+KSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
G IKSSNLC E+++Y++P ETAVCNLAS+ALP ++ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL +PFDS
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA+ LN IFETIY+ ++ S E+A ++GPYET+ GSP S+GILQ DMW P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W +K +I +GS+Q +P +P+ELK +YKTVWEI QKT+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID S SLN+ + P GKLTS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 760
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/775 (61%), Positives = 607/775 (78%), Gaps = 15/775 (1%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV KRDG++E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA+LAARI +SNLHK T K FS+ ++D+Y + N +G AP+I+DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+I+M+N +L+S I+ KTLERSYLL++ G+V ERPQH++MRVA+GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI++A++TY++MS ++FTHASPTLFNAGTP+ Q+SSCFLV MK+DSIEGIYDTLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVD GG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDAGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHADIF+F+D+RKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P APGL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
DC+G EFE LYT+YEKEG+ K ++AQ LW+ IL++Q ETGTP++++KD CN+KSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
G IKSSNLC E+++Y++P ETAVCNLAS+ALP ++ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL +PFDS
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA+ LN IFETIY+ ++ S E+A ++GPYET+ GSP S+GILQ DMW P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W +K +I +GS+Q +P +P+ELK +YKTVWEI QKT+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID S SLN+ + P GKLTS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 760
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/775 (61%), Positives = 607/775 (78%), Gaps = 15/775 (1%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELX 60
MYV KRDG++E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD L
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 XXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
HPDYA+LAARI +SNLHK T K FS+ ++D+Y + N +G AP+I+DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+I+M+N +L+S I+ KTLERSYLL++ G+V ERPQH++MRVA+GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI++A++TY++MS ++FTHASPTLFNAGTP+ Q+SSCFLV MK+DSIEGIYDTLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG K GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKAPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHADIF+F+D+RKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P APGL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
DC+G EFE LYT+YEKEG+ K ++AQ LW+ IL++Q ETGTP++++KD CN+KSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
G IKSSNLC E+++Y++P ETAVCNLAS+ALP ++ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL +PFDS
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA+ LN IFETIY+ ++ S E+A ++GPYET+ GSP S+GILQ DMW P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W +K +I +GS+Q +P +P+ELK +YKTVWEI QKT+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID S SLN+ + P GKLTS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 760
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 987 bits (2552), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/688 (67%), Positives = 552/688 (80%), Gaps = 19/688 (2%)
Query: 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSE 134
A LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A DI++ N RL+S
Sbjct: 2 AILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSA 61
Query: 135 IIXXXXXXXXXXXXKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMS 194
II KTLERSYLLK+ GKV ERPQHMLMRV+VGIHK+DID+AI+TY+++S
Sbjct: 62 IIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLS 121
Query: 195 QRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHN 254
+RWFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+ISKSAGGIGV+V
Sbjct: 122 ERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSC 181
Query: 255 IRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDL 314
IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+YLEPWH DIFEFLDL
Sbjct: 182 IRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDL 241
Query: 315 RKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKY 374
+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL + WG EFE+LY Y
Sbjct: 242 KKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASY 301
Query: 375 EKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQ 434
EK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNLGTIK SNLCTE+++
Sbjct: 302 EKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVE 361
Query: 435 YTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTE 494
YTS E AVCNLAS+AL YV + +DF+KLAEVT +V
Sbjct: 362 YTSKDEVAVCNLASLALNMYV-------------------TSEHTYDFKKLAEVTKVVVR 402
Query: 495 NLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETI 554
NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+S EAQ LNK IFETI
Sbjct: 403 NLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 462
Query: 555 YYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRN 614
YY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WDW L++ I+K G+RN
Sbjct: 463 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRN 522
Query: 615 SLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPII 674
SLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HLL DLTE GLW +
Sbjct: 523 SLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEM 582
Query: 675 KNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQP 734
KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG +ID SQSLNIH+ +P
Sbjct: 583 KNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEP 642
Query: 735 NFGKLTSLHFHAWLRGLKTGMYYLRSRA 762
N+GKLTS+HF+ W +GLKTGMYYLR+RA
Sbjct: 643 NYGKLTSMHFYGWKQGLKTGMYYLRTRA 670
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
Length = 761
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSASQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 761
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
Length = 761
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCWGT---EFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELDELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
Length = 761
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
Length = 761
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
Length = 761
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 197/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 225 bits (574), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 196/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC ++ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 225 bits (573), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 196/704 (27%), Positives = 305/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC ++ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 196/704 (27%), Positives = 304/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC + T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
Length = 761
Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 196/704 (27%), Positives = 304/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNL E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
Length = 761
Score = 223 bits (567), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 196/704 (27%), Positives = 304/704 (43%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDE-L 59
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E +
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 60 XXXXXXXXXXNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIXXXXXXXXXXXXKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNL E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 152/591 (25%), Positives = 256/591 (43%), Gaps = 113/591 (19%)
Query: 190 YHMMSQRWFTHASPTLFNAG---------TPRAQ------------------LSSCFLVC 222
+ ++ R F SPTLFNAG P Q LS+CF+V
Sbjct: 79 FRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVP 138
Query: 223 MKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
+ DSIE I++ +KE A+I+K GG+G + +R GS++ GT+G ++G V + VFN
Sbjct: 139 V-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERV 342
V QG +R+GA L H DI EF+D +K + E
Sbjct: 198 ISVVKQGS-RRRGALMGILNINHPDIEEFIDAKKENTGE--------------------- 235
Query: 343 QSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGK---------AKKVVQAQNLWFEI 393
+ + F L+ + + + + YE++G+ +K V+ + L+ +I
Sbjct: 236 ---AVLNFF------NLSVGFPMDKKEILKLYEEDGELELSHPRSTIRKKVKIRELFRKI 286
Query: 394 LKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPR 453
+ ++G P + F NK I S+N C E+ ++ CNL SI + +
Sbjct: 287 ATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAK 342
Query: 454 YVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRS 513
+ N + D E L E+ I L+ +IDVN +P++ ++
Sbjct: 343 FY--------------------NNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKA 382
Query: 514 NLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYE 573
R +G+G+ G AD L +P++S EA+ ++ I HA RTS E+ +G +
Sbjct: 383 VKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFP 442
Query: 574 TYHGSPV-SKGILQPDMWGVNPSDRWDWGGLRDM--ISKNGVRNSLLVAPMPTASTSQIL 630
S ++ P G++ D +R++ ++K RN L+ PT S S I
Sbjct: 443 LLEISRYRTEDNFVPFAMGMSNYD----DEIREVMKMTKEFRRNVALLTIAPTGSISNIA 498
Query: 631 GNNECFEPYTSNIYSRRVLSGE-----FVVVNKHLLHDLTEMGLWSPIIKNKI---IYDD 682
+ EP Y+R V + + VN+ L L +P I +I + +
Sbjct: 499 DTSSGLEPNFLLAYTRFVTKDDGTKEPLLYVNQVLREKL------NPEILKRIEKELIEK 552
Query: 683 GSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ 733
GS++ IP +PE++K ++ +I + M Y+D++ S I+M Q
Sbjct: 553 GSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQ 603
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 152/591 (25%), Positives = 256/591 (43%), Gaps = 113/591 (19%)
Query: 190 YHMMSQRWFTHASPTLFNAG---------TPRAQ------------------LSSCFLVC 222
+ ++ R F SPTLFNAG P Q LS+CF+V
Sbjct: 79 FRVLKARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVP 138
Query: 223 MKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
+ DSIE I++ +KE A+I+K GG+G + +R GS++ GT+G ++G V + VFN
Sbjct: 139 V-GDSIEEIFEAVKEYALITKVGGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSA 197
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERV 342
V QG +R+GA L H DI EF+D +K + E
Sbjct: 198 ISVVKQGS-RRRGALMGILNINHPDIEEFIDAKKENTGE--------------------- 235
Query: 343 QSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGK---------AKKVVQAQNLWFEI 393
+ + F L+ + + + + YE++G+ +K V+ + L+ +I
Sbjct: 236 ---AVLNFF------NLSVGFPMDKKEILKLYEEDGELELSHPRSTIRKKVKIRELFRKI 286
Query: 394 LKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPR 453
+ ++G P + F NK I S+N C E+ ++ CNL SI + +
Sbjct: 287 ATNAWKSGDPGLAFLGEMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAK 342
Query: 454 YVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRS 513
+ N + D E L E+ I L+ +IDVN +P++ ++
Sbjct: 343 FY--------------------NNGFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKA 382
Query: 514 NLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYE 573
R +G+G+ G AD L +P++S EA+ ++ I HA RTS E+ +G +
Sbjct: 383 VKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFP 442
Query: 574 TYHGSPV-SKGILQPDMWGVNPSDRWDWGGLRDM--ISKNGVRNSLLVAPMPTASTSQIL 630
S ++ P G++ D +R++ ++K RN L+ PT S S I
Sbjct: 443 LLEISRYRTEDNFVPFAMGMSNYD----DEIREVMKMTKEFRRNVALLTIAPTGSISNIA 498
Query: 631 GNNECFEPYTSNIYSRRVLSGE-----FVVVNKHLLHDLTEMGLWSPIIKNKI---IYDD 682
+ EP Y+R V + + VN+ L L +P I +I + +
Sbjct: 499 DTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKL------NPEILKRIEKELIEK 552
Query: 683 GSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ 733
GS++ IP +PE++K ++ +I + M Y+D++ S I+M Q
Sbjct: 553 GSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQ 603
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 714
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 166/661 (25%), Positives = 272/661 (41%), Gaps = 121/661 (18%)
Query: 154 SYLLKV-QGK-VVERPQHMLMRVAVGIHKDDIDSAIK-TYHMMSQRWFTHASPTLFNAG- 209
SY LK GK +E + + VA+ + + D A + T M+S R F A+PT N G
Sbjct: 111 SYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGR-FQPATPTFLNCGK 169
Query: 210 TPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTS 269
R +L SCFL+ ++D+ +E I + +SK GG+ + N+R G+ I+ S
Sbjct: 170 QQRGELVSCFLLRIEDN-MESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQS 228
Query: 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLF 329
+G++P++++ D Y +Q G R+GA AVYL H DI FLD ++ + E+ R + L
Sbjct: 229 SGVIPVMKMLEDAFSYANQLGA-RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLS 287
Query: 330 YALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEF------ERLYTKYEKEGKAKKV 383
+ +PD+ + N +LF P + + +G F ER K
Sbjct: 288 LGVVIPDITFRLAKENAQMALFSPYD---IQRRYGKPFGDIAISERYDELIADPHVRKTY 344
Query: 384 VQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQ--------- 434
+ A++ + + + Q E+G PY++F+DT N+ + G I SNLC+E++Q
Sbjct: 345 INARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDD 402
Query: 435 ---YTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGI 491
YT CNL S+ + + D +
Sbjct: 403 NLDYTHIGHDISCNLGSLNIAHVM-------------------------DSPDIGRTVET 437
Query: 492 VTENLNKIIDVNYY-PVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDI 550
L + D+++ V + N IG+G L G+ + S EA
Sbjct: 438 AIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLY 497
Query: 551 FETIYYHALRTSSEIAAREGPYETYHGSPVSK--------GILQPDMW------------ 590
F TI +HA+ TS +A G +T+ G S+ LQ D W
Sbjct: 498 FYTITWHAVHTSMRLARERG--KTFAGFAQSRYASGDYFTQYLQDD-WQPKTAKVRALFA 554
Query: 591 --GVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRV 648
G+ R W LRD + + G+ N L A PT S S I N TS+I+
Sbjct: 555 RSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYI---NHA----TSSIH---- 603
Query: 649 LSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKI----PQIPEELKAIYKTVWE 704
PI+ I +G ++ P + E +Y+ ++
Sbjct: 604 -----------------------PIVAKIEIRKEGKTGRVYYPAPFMTNENLDMYQDAYD 640
Query: 705 IKQKTLVDMAVDRGCYIDHSQSLNIHM-DQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAA 763
I + ++D + ++D SL + D + +AW +G+K+ +YY+R R
Sbjct: 641 IGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQL 699
Query: 764 A 764
A
Sbjct: 700 A 700
>pdb|1VK4|A Chain A, Crystal Structure Of Pfkb Carbohydrate Kinase (tm0415)
From Thermotoga Maritima At 1.91 A Resolution
Length = 298
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 562 SSEIAAREGPYETYHGSPVSKGILQPDMWGVNP--------SDRWDWGGLRDMISKNGVR 613
S ++ +G E +G V G + + GV D + LRD NGV
Sbjct: 21 SKDVNVVDGKREIAYGGGVVXGAITSSLLGVKTKVITKCTREDVSKFSFLRD----NGVE 76
Query: 614 NSLLVAPMPTASTSQILGN---NECF-----EPYTSNIYSRRVLSGEFVVVNKHLLHDLT 665
L +P T+ ++ + E F +P+T + + + GE V +N +
Sbjct: 77 VVFLKSPRTTSIENRYGSDPDTRESFLISAADPFTESDLA--FIEGEAVHINPLWYGEFP 134
Query: 666 EMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTL 710
E + P+++ K+ + Q ++PE K +Y+ WE K+K L
Sbjct: 135 EDLI--PVLRRKVXFLSADAQGFVRVPENEKLVYRD-WEXKEKYL 176
>pdb|3US9|A Chain A, Crystal Structure Of The Ncx1 Intracellular Tandem Calcium
Binding Domains(Cbd12)
Length = 295
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 160 QGKVVERPQHMLMRVAVGIHKDDIDSAIKTY--HMMSQRWFTHAS----------PTLFN 207
+G VV +P + VGI DDI K + H+ + + + AS L
Sbjct: 64 EGTVVFKPGETQKEIRVGIIDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALAC 123
Query: 208 AGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNG 267
G+P + F DD GI+ + +S+S G + V V +R +G+ RG
Sbjct: 124 LGSPSTATVTIF-----DDDHAGIFTFEEPVTHVSESIGIMEVKV--LRTSGA--RG--- 171
Query: 268 TSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARD 327
N IVP + TAR GGG+ LE + +I + + ++ +E + +
Sbjct: 172 --NVIVP-YKTIEGTAR----GGGEDFEDTCGELEFQNDEIVKTISVKVIDDEEYEKNKT 224
Query: 328 LFYALWVPDLFMERVQSNGLWSL 350
F + P L +E + G +++
Sbjct: 225 FFLEIGEPRL-VEMSEKKGGFTI 246
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 453 RYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARR 512
R V E VP S +++ N+ F F+ L + TGI EN+ D +Y V TA++
Sbjct: 256 RTVEETQVPEISGVARIY------NQKF-FQSLLKATGIDLENIVYYKDETHYFVMTAKK 308
Query: 513 SNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQ 545
L +G+ Q L++T LLG EA Q
Sbjct: 309 QCLLR--LGVLRQDLSETDQLLGKANVVPEALQ 339
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 453 RYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARR 512
R V E VP S +++ N+ F F+ L + TGI EN+ D +Y V TA++
Sbjct: 248 RTVEETQVPEISGVARIY------NQKF-FQSLLKATGIDLENIVYYKDETHYFVMTAKK 300
Query: 513 SNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQ 545
L +G+ Q L++T LLG EA Q
Sbjct: 301 QCLLR--LGVLRQDLSETDQLLGKANVVPEALQ 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,716,072
Number of Sequences: 62578
Number of extensions: 992524
Number of successful extensions: 2637
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2466
Number of HSP's gapped (non-prelim): 36
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)