BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003602
(808 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 816
Score = 1506 bits (3898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/816 (86%), Positives = 760/816 (93%), Gaps = 8/816 (0%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYVVKRDG+QE VHFDKITARLKKLSYGLS +HCDPVLV+QKVC GVYKGVTTSQLDELA
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AETAAAMT NHPDYASLAARI VSNLHKNTKKSFSETIKDM+ H N+RSGLK+PLIADDV
Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVNDRSGLKSPLIADDV 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
++IIM+NAARLDSEIIYDRDF+YDYFGFKTLERSYLLKVQG VVERPQHMLMRVAVGIHK
Sbjct: 121 FEIIMQNAARLDSEIIYDRDFEYDYFGFKTLERSYLLKVQGTVVERPQHMLMRVAVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DDIDS I+TYH+MSQRWFTHASPTLFNAGTPR QLSSCFLVCMKDDSIEGIY+TLKECA+
Sbjct: 181 DDIDSVIQTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAV 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY
Sbjct: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHAD++EFL+LRKNHGKEEHRARDLFYALW+PDLFMERVQ+NG WSLFCPNEAPGLA
Sbjct: 301 LEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFCPNEAPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
DCWG EFE LYTKYE+EGKAKKVVQAQ LW+EIL SQ+ETGTPYMLFKD+CN+KSNQQNL
Sbjct: 361 DCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIKSSNLCTE+I+YTSPTETAVCNLASIALPR+VRE GVP++SHP KL GS SKNRYF
Sbjct: 421 GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGSLDSKNRYF 480
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DFEKLAEVT VT NLNKIIDVNYYPVETA+ SN+RHRPIGIGVQGLAD FILLGMPFDS
Sbjct: 481 DFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQQLNKDIFETIYYHAL+ S+E+AAR GPYETY GSPVSKGILQPDMW V PSDRWDW
Sbjct: 541 PEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNVIPSDRWDW 600
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL
Sbjct: 601 AVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
LHDLT+MGLW+P +KNK+I ++GS+ + +IP++LKAIY+TVWEIKQ+T+VDMA DRGCY
Sbjct: 661 LHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVDMAADRGCY 720
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIHMD+PNF KLTSLHF+ W +GLKTGMYYLRSRAAADAIKFTVDT++LKE P
Sbjct: 721 IDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVDTAMLKEKP 780
Query: 781 KVT--------DDDDAKMAQMVCSLTNREECMACGS 808
V +D++ K+AQMVCSLTN EEC+ACGS
Sbjct: 781 SVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio
GN=rrm1 PE=2 SV=1
Length = 794
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/813 (66%), Positives = 648/813 (79%), Gaps = 24/813 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KRDG QE V FDKIT+R++KL YGL+ + DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGGQEGVMFDKITSRIQKLCYGLNSDFVDPTQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AETAA TT HPDYA LAARI VSNLHK TKK FSE ++D+YN+ N + +P+I+ +
Sbjct: 61 AETAATSTTKHPDYAILAARIAVSNLHKETKKVFSEVMEDLYNYVNPLNSRHSPMISKET 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S IIYDRDF Y++FGFKTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNFFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DI +AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIAAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLAMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATG YI GTNG SNG+VPMLRV N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGRYIAGTNGNSNGLVPMLRVNNNTARYVDQGGNKRPGAFAMY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIF+FL+L+KN GKEE RARDLFYALW+PDLFM+RV++NG WSL CPN+ PGL
Sbjct: 301 LEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMCPNDCPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+CWG EFE+LY KYE+EG+AK+VV+AQ LW+ I++SQ ETGTPYML+KD CN+KSN+QNL
Sbjct: 361 ECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+++YTS E AVCNLASIAL YV + R F
Sbjct: 421 GTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYV-------------------TSERTF 461
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF+KLA VT ++ +NLNKIID+NYYPV+ A SN RHRPIGIGVQGLAD FIL+ PF+S
Sbjct: 462 DFQKLASVTKVIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFES 521
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
TEAQ LN IFETIYY AL +S E+AA GPY+TY G PVSKGILQ DMW P+D WDW
Sbjct: 522 TEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDW 581
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+ +GVRNSLL+APMPTAST+QILGNNE EPYTSNIY RRVLSGEF +VN HL
Sbjct: 582 AALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DLTE GLW+ +KN+II +GS+Q IP IP++LK +YKTVWEI QKT++ MA DRG Y
Sbjct: 642 LKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAY 701
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR++ A+ I+FT++ LKE
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQ 761
Query: 781 KVTDDDDAKM-----AQMVCSLTNREECMACGS 808
K T +D + A MVCSL NR EC+ CGS
Sbjct: 762 KTTSSEDEETKERNKAAMVCSLENRHECLMCGS 794
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus
GN=Rrm1 PE=1 SV=2
Length = 792
Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/811 (66%), Positives = 652/811 (80%), Gaps = 22/811 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AETAA +TT HPDYA LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGRHSPMVASST 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI+M N RL+S IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVMANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S++WFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSEKWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+++YTS E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TPEHTY 461
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DFEKLAEVT ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FIL+ PF+S
Sbjct: 462 DFEKLAEVTKVIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S E+A GPYETY GSPVSKGILQ DMW V P+D WDW
Sbjct: 522 PEAQLLNKQIFETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDW 581
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DLTE GLW+ +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG +
Sbjct: 642 LKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 KVTDDDDA---KMAQMVCSLTNREECMACGS 808
K +++ A MVCSL NREEC+ CGS
Sbjct: 762 KALKEEEEKERNTAAMVCSLENREECLMCGS 792
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens
GN=RRM1 PE=1 SV=1
Length = 792
Score = 1125 bits (2911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/811 (66%), Positives = 654/811 (80%), Gaps = 22/811 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AETAA +TT HPDYA LAARI VSNLHK TKK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+++YTS E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 KVTDDDDA---KMAQMVCSLTNREECMACGS 808
KV+ +++ A MVCSL NR+EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii
GN=RRM1 PE=2 SV=1
Length = 792
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/811 (66%), Positives = 653/811 (80%), Gaps = 22/811 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KRDG+QE V FDKIT+R++KL YGL+++ DP ++ KV G+Y GVTT +LD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AETAA +TT HPDYA LAARI VSNLHK KK FS+ ++D+YN+ N +G +P++A
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKEAKKVFSDVMEDLYNYINPHNGKHSPMVAKST 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI++ N RL+S IIYDRDF Y+YFGFKTLERSYLLK+ GKV ERPQHMLMRV+VGIHK
Sbjct: 121 LDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKINGKVAERPQHMLMRVSVGIHK 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+AI+TY+++S+RWFTHASPTLFNAGT R QLSSCFL+ MKDDSIEGIYDTLK+CA+
Sbjct: 181 EDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIGV+V IRATGSYI GTNG SNG+VPMLRV+N+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH DIFEFLDL+KN GKEE RARDLF+ALW+PDLFM+RV++N WSL CPNE PGL
Sbjct: 301 LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LY YEK+G+ +KVV+AQ LW+ I++SQ ETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 EVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK S+LCTE+++YTS E AVCNLAS+AL YV + +
Sbjct: 421 GTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYV-------------------TSEHTY 461
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF+KLAEVT +V NLNKIID+NYYPV A SN RHRPIGIGVQGLAD FIL+ PF+S
Sbjct: 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFES 521
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S ++A +GPYETY GSPVSKGILQ DMW V P+D WDW
Sbjct: 522 AEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDW 581
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+K G+RNSLL+APMPTAST+QILGNNE EPYTSNIY+RRVLSGEF +VN HL
Sbjct: 582 KLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHL 641
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DLTE GLW +KN+II +GS+Q IP+IP++LK +YKTVWEI QKT++ MA +RG +
Sbjct: 642 LKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIH+ +PN+GKLTS+HF+ W +GLKTGMYYLR+R AA+ I+FT++ LK+
Sbjct: 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKE 761
Query: 781 KVTDDDDA---KMAQMVCSLTNREECMACGS 808
KV+ +++ A MVCSL NR+EC+ CGS
Sbjct: 762 KVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2
Length = 929
Score = 1116 bits (2886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/785 (66%), Positives = 624/785 (79%), Gaps = 22/785 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYV KRDG+QE V FDKITAR+ +L YGL + H DPV ++QKV +GVY GVTT+QLD+LA
Sbjct: 1 MYVKKRDGRQERVQFDKITARVSRLCYGLDMNHVDPVAITQKVISGVYGGVTTAQLDDLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AETAA MT HPDYA LAARI VSNLHK TKK +S I ++YN+ N R+G +P+IA DV
Sbjct: 61 AETAAYMTVTHPDYAILAARIAVSNLHKQTKKQWSLVISELYNYVNPRTGKHSPMIAKDV 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+ +M++ DS I+YDRDF+Y YFGFKTLERSYLLK+ G++ ERPQHM+MRVAVGI
Sbjct: 121 YECVMRHKDEFDSAIVYDRDFNYQYFGFKTLERSYLLKLDGQIAERPQHMIMRVAVGIWG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DD++ I+TY++MS + FTHASPTLFNAGTP+ QLSSCFLV MK+DSIEGIYDTLK CA+
Sbjct: 181 DDVERVIETYNLMSLKTFTHASPTLFNAGTPQPQLSSCFLVDMKEDSIEGIYDTLKTCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+++H IRATGSYI GTNGTSNGIVPMLRVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKMAGGIGLNIHRIRATGSYIAGTNGTSNGIVPMLRVFNNTARYVDQGGNKRPGAFAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHAD+FEFLDLRKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+L CP+E PGLA
Sbjct: 301 LEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMCPHECPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D +G EFE LY KYEKEGK +K V+AQ LW+ IL++Q ETG P+ML+KD CN+KSNQ+NL
Sbjct: 361 DVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTI+SSNLCTE+I+Y++P E AVCNLAS+AL ++ +N +
Sbjct: 421 GTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFI------------------DYENASY 462
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF+KL EVT +V NLNKIID+N+YPV+ A SN+RHRPIG+GVQGLAD F+ L MPFDS
Sbjct: 463 DFKKLHEVTQVVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDS 522
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
A +LN IFETIY+ AL S ++A +GPY TY GSPVS+GILQ DMW V P++ WDW
Sbjct: 523 DAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDW 582
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+ I K GVRNSLL+APMPTASTSQILGNNECFEPYTSNIY RRVL+GEF VVN L
Sbjct: 583 TALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWL 642
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL EMGLWS +KN+II + GS+Q I IP ++KA+YKTVWEI Q+T+V MA DRG +
Sbjct: 643 LRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAF 702
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQSLNIHM +P GK+TS+HF W GLKTGMYYLR++AAA I+FTVD L
Sbjct: 703 IDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL---- 758
Query: 781 KVTDD 785
+ TDD
Sbjct: 759 RATDD 763
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila
melanogaster GN=RnrL PE=1 SV=2
Length = 812
Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/820 (62%), Positives = 650/820 (79%), Gaps = 31/820 (3%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
+YV+KRDG+QE VHFDKIT+R++KL Y L+++ DPV ++ +V G+Y GVTT +LD LA
Sbjct: 12 LYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQELDNLA 71
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AE AA +T NHPDYA LAARI VSNLHK TKK+FS+ +D+YNH N+ + K PL+++
Sbjct: 72 AEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKETNQKVPLVSEFH 131
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+++ KNA RL+S IIYDRDF Y+YFGFKTLERSYLLK GK+ ERPQHMLMRVA+GIH
Sbjct: 132 YNVVKKNATRLNSSIIYDRDFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHG 191
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DID+A++TY+++S+R+FTHASPTLF A T R QLSSCFL+ M DSIEGI+ ++++CA+
Sbjct: 192 EDIDAAVETYNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCAM 251
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISKSAGGIG++VH IRA G+ I GTNGTSNG+VPMLRVFN+ ARYVDQGGGKR GAFA+Y
Sbjct: 252 ISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQGGGKRPGAFAIY 311
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+D+FEFL+L+KN GKEE+RARDLFYALW+PDLFM+RV++NG WSL CP++ PGL
Sbjct: 312 LEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMCPHKCPGLH 371
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG EFE+LY KYE+EG+A + V+AQ+LWF I+++Q+ETG PYMLFKD CN+KSNQQN+
Sbjct: 372 DVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNV 431
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+++Y++P E AVCNLASIAL +V + + +
Sbjct: 432 GTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFV-------------------TPEKTY 472
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF+KL EVT IVT+NLNKIID+NYYP+ AR+SNLRHRP+GIG+QG AD IL+ P++S
Sbjct: 473 DFKKLKEVTKIVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYES 532
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA LN+ IFETIYY AL S E+A EGPYETY GSPVSKGILQ DMW P++ WDW
Sbjct: 533 EEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDW 592
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I +GVRNSLLVAPMPTAST+QI+GNNE FEPYT+NIY+RRVLSGEF VVN HL
Sbjct: 593 QKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHL 652
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DLTE+ LW +KN+II GS+Q I IP +++ +YKTVWEI K+ + MA DRG +
Sbjct: 653 LRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAF 712
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVD-----TSV 775
ID SQS NIH+ +PN+GKLTS+HF++W GLKTGMYYLR++ AA+AI+FTV+ S+
Sbjct: 713 IDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSM 772
Query: 776 LKEN-------PKVTDDDDAKMAQMVCSLTNREECMACGS 808
+N K +D + KMA MVCSL N++ CM+CGS
Sbjct: 773 NGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSCGS 812
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc22 PE=1 SV=2
Length = 811
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/831 (62%), Positives = 648/831 (77%), Gaps = 43/831 (5%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V KRDG+QE V FDKITAR+ +L YGL +H DPV ++QKV +GVY GVTT +LD LA
Sbjct: 1 MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AETAA MTT HPDYA LAARI VSNLHK T+K FS ++ ++++ N ++ AP+I+D +
Sbjct: 61 AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISDKI 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YDI+MK+ LDS IIYDRDF Y++FGFKTLERSYLL++ GKV ERPQHM+MRVAVGIH
Sbjct: 121 YDIVMKHKDELDSAIIYDRDFTYNFFGFKTLERSYLLRIDGKVAERPQHMIMRVAVGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
+DI++AI+TY++MSQR+FTHASPTLFNAGTPR QLSSCFLV MKDDSIEGIYDTLK CA+
Sbjct: 181 EDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVTMKDDSIEGIYDTLKMCAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+++HNIRATGSYI GTNGTSNGIVPM+RV+N+TARYVDQGG KR GAFA Y
Sbjct: 241 ISKTAGGIGINIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHAD+ +FL+LRK HG E+ RAR++FYALW+PDLFM+RV+ N W+ FCPNEAPGLA
Sbjct: 301 LEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFCPNEAPGLA 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG EF LY KYEKE + ++ + AQ +W+ IL+SQ+ETG P+ML+KD+CN+KSNQ+N+
Sbjct: 361 DVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCNRKSNQKNV 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTI+ SNLCTE+++Y+SP E AVCNLAS+ALP ++ K+ +
Sbjct: 421 GTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFI--------------------KDGKY 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL +V +VT NLNKIIDVNYYPV ARRSN+RHRP+G+GVQGLAD F L +PF+S
Sbjct: 461 NFQKLHDVVKVVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFES 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
A++LN IFETIY+ AL S EIA EG YE+Y GSP S+GILQ DMW VNP+D WDW
Sbjct: 521 AGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDW 580
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L++ I+K+G+RNSLLVAPMPTASTSQILG NECFEPYTSN+Y RRVLSGEF +VN L
Sbjct: 581 AELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWL 640
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL E LW+ +KNK++ DGS+Q IP+IP++LK +YKTVWEI QKT++D A DRG +
Sbjct: 641 LKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPF 700
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLK--- 777
ID SQSLNIH+ P++GK+TS+HF+ W +GLKTGMYYLR+ AA+ AIKFTVD L+
Sbjct: 701 IDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPVALRARN 760
Query: 778 -----ENPK-VTDDDDAKMAQ--------------MVCSLTNREECMACGS 808
EN K V + A+++ + CS+ N E C C +
Sbjct: 761 EESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIKNPEACEMCSA 811
>sp|Q54Q71|RIR1_DICDI Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium
discoideum GN=rnrA PE=3 SV=1
Length = 870
Score = 1096 bits (2834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/791 (64%), Positives = 633/791 (80%), Gaps = 17/791 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLK---KLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLD 57
MYVVKRDG +E V FDKIT+R+ ++ L+ + DP+ V+QKV +GV+ GV T++LD
Sbjct: 16 MYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSDIVDPIEVAQKVVSGVFPGVKTTELD 75
Query: 58 ELAAETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIA 117
LAAETAA M+T HPDY LAARI VSNLHK T KSF ET+K Y N +S L APL++
Sbjct: 76 NLAAETAAYMSTRHPDYGILAARISVSNLHKQTSKSFVETVKKQYEFINPKSNLLAPLVS 135
Query: 118 DDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVG 177
++Y+I+MK+ RL+S I Y RDFDYD+FGFKTLERSYL ++ GK+VERPQHMLMRV++G
Sbjct: 136 KELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLERSYLHRINGKIVERPQHMLMRVSIG 195
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKE 237
IH +D++SAI TY +S++ FTHA+PTLFNAGTP Q+SSCFLV MK+DSI+GIYDTLK+
Sbjct: 196 IHGEDLESAINTYKRLSEKLFTHATPTLFNAGTPSPQMSSCFLVQMKEDSIDGIYDTLKQ 255
Query: 238 CAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CA+ISKSAGGIG++VH IRA SYIRGTNGTSNG+VPMLRVFNDTARYVDQGGGKRKGAF
Sbjct: 256 CALISKSAGGIGIAVHKIRAAQSYIRGTNGTSNGLVPMLRVFNDTARYVDQGGGKRKGAF 315
Query: 298 AVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAP 357
AVYLEPWHAD+FEF+DL+KN GKEE RARDLFYALWV D+FMERV+ NG W+LFCPNEAP
Sbjct: 316 AVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFCPNEAP 375
Query: 358 GLADCWGTEFERLYTKYEKEGK-AKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSN 416
GLA+ E LY KYE ++V++AQ LWF I++SQ+ETGTP++L+KD CN KSN
Sbjct: 376 GLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDACNAKSN 435
Query: 417 QQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSK 476
Q+NLGTI SSNLCTE+IQYTSP E AVCNLASIALP++VR+ VGS K
Sbjct: 436 QKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQK-----------VGSTDPK 484
Query: 477 NRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM 536
+ FD + L E+T ++T NLN IID NYYPV A+ SNLRHRPIGIG+QGLAD FI + M
Sbjct: 485 EKEFDHQFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRM 544
Query: 537 PFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSD 596
PFDS A +LN +I ETIY+ AL S E+A R+G YE++ GSP SKGILQ DMW V PS
Sbjct: 545 PFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSS 604
Query: 597 RWDWGGLRD-MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
RW+W L+D +++K G+RNSLL+APMPTASTSQILGNNECFEPYTSNIYSRRVL+GEF +
Sbjct: 605 RWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTI 664
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAV 715
VNK LL DL E+G+WSP +KN+I+ GS+Q I IP++LK +YKTVWEI+Q+TL+DMA
Sbjct: 665 VNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAA 724
Query: 716 DRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
DRG +ID SQS N+ + +P F KLTS+HF++W +GLKTGMYYLR+R AADAI+FTVD +
Sbjct: 725 DRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVD-PI 783
Query: 776 LKENPKVTDDD 786
+ + PK +++
Sbjct: 784 VSQTPKPVENN 794
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1
SV=2
Length = 888
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/775 (63%), Positives = 626/775 (80%), Gaps = 15/775 (1%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYV KRDG++E V FDKITAR+ +L YGL +H D V V+Q++ +GVY+GVTT +LD LA
Sbjct: 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AET A MTT HPDYA+LAARI +SNLHK T K FS+ ++D+Y + N +G AP+I+DDV
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDV 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+I+M+N +L+S I+YDRDF Y YFGFKTLERSYLL++ G+V ERPQH++MRVA+GIH
Sbjct: 121 YNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI++A++TY++MS ++FTHASPTLFNAGTP+ Q+SSCFLV MK+DSIEGIYDTLKECA+
Sbjct: 181 RDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIG+ +HNIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA+Y
Sbjct: 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHADIF+F+D+RKNHGKEE RARDLF ALW+PDLFM+RV+ NG W+LF P APGL+
Sbjct: 301 LEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLS 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
DC+G EFE LYT+YEKEG+ K ++AQ LW+ IL++Q ETGTP++++KD CN+KSNQ+NL
Sbjct: 361 DCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNL 419
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
G IKSSNLC E+++Y++P ETAVCNLAS+ALP ++ S K +
Sbjct: 420 GVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIET--------------SEDGKTSTY 465
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL E+ +VT NLN++ID NYYPVE AR+SN+RHRPI +GVQGLADTF+LL +PFDS
Sbjct: 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDS 525
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EA+ LN IFETIY+ ++ S E+A ++GPYET+ GSP S+GILQ DMW P WDW
Sbjct: 526 EEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDW 585
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+GVRNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 DTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W +K +I +GS+Q +P +P+ELK +YKTVWEI QKT+++MA DR Y
Sbjct: 646 LRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID S SLN+ + P GKLTS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D +
Sbjct: 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 760
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit
OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1
Length = 788
Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/805 (63%), Positives = 633/805 (78%), Gaps = 26/805 (3%)
Query: 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAA 61
YVVKRDG++E VHFDKIT+R++KLSYGL+++ DPV V+ KV +G+YKGVTT +LD LAA
Sbjct: 8 YVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVELDNLAA 67
Query: 62 ETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVY 121
ETAA+MTT HP+YA LAARI VSNLHK T K FSE +K ++ ++ +G AP+I+D+ +
Sbjct: 68 ETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHTGKHAPMISDETW 127
Query: 122 DIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKD 181
II KNA +L+S I+YDRD+ Y YFGFKTLERSYLLK+ ++VERPQ MLMRV++GIH D
Sbjct: 128 AIIEKNADKLNSAIVYDRDYSYTYFGFKTLERSYLLKINKEIVERPQQMLMRVSIGIHGD 187
Query: 182 DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAII 241
DI SAI+TY++MS+R+ THASPTLFN+GT R Q+SSCFL+ M +DSI GIYDTLK+CA+I
Sbjct: 188 DITSAIETYNLMSERYMTHASPTLFNSGTCRPQMSSCFLLTMSEDSILGIYDTLKQCALI 247
Query: 242 SKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYL 301
SKSAGGIG++VH IRATGS I GTNGTSNG++PMLRV+N+TARYVDQGG KR GAFA+YL
Sbjct: 248 SKSAGGIGLNVHKIRATGSVIAGTNGTSNGLIPMLRVYNNTARYVDQGGNKRPGAFAIYL 307
Query: 302 EPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLAD 361
EPWHADIFEF+ LRKN G EE RARDLF ALW+PDLFM+RV+ + WSL CP E PGL D
Sbjct: 308 EPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMCPCECPGLDD 367
Query: 362 CWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG 421
CWG EFE LY KYE EG+ +K V+A+ LW I+ +QIETG PY+ +KD N+KSNQQNLG
Sbjct: 368 CWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLG 427
Query: 422 TIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFD 481
TIK SNLCTE+I+Y++P E AVCNLASIAL RYV + + FD
Sbjct: 428 TIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYV-------------------TPEKKFD 468
Query: 482 FEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDST 541
F KLAEVT ++T NLNKIIDVNYYPVE AR SN+RHRPIG+GVQGLAD F+L+ PF S
Sbjct: 469 FVKLAEVTKVITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSA 528
Query: 542 EAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWG 601
EA+ LNK IFETIYY AL S E+A GPY TY GSPVSKG LQ DMWGV P+D+ DW
Sbjct: 529 EARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWA 588
Query: 602 GLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLL 661
LR I+K+G+RNSLL+APMPTAST+QILGNNE EPYTSNIYSRRVLSG+F +VN H+L
Sbjct: 589 TLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHML 648
Query: 662 HDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYI 721
DL E GLW+ +KN++I ++GS+Q I IP ++K +Y+TVWEI QK +++MA DRG YI
Sbjct: 649 KDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYI 708
Query: 722 DHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPK 781
D SQSLNIHM +P++ +TS+HF+ W +GLKTGMYYLR++ A +A++FTVD + LK N +
Sbjct: 709 DQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTNQQ 768
Query: 782 VTDDDDAKMAQMVCSLTNREECMAC 806
+ A +A+ + E C+ C
Sbjct: 769 A--ETPATVAE-----SQDEGCLMC 786
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1
SV=4
Length = 869
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/775 (62%), Positives = 618/775 (79%), Gaps = 15/775 (1%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYV+KRDG++E V FDKIT+R+ +LSYGL D V V+Q++ +GVY GVTT +LD LA
Sbjct: 1 MYVIKRDGRKEPVQFDKITSRITRLSYGLDPNRIDAVKVTQRIISGVYSGVTTVELDNLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AET A MTT HPDYA+LAARI +SNLHK T K FS+ I+D+++ N +G AP+I+D++
Sbjct: 61 AETCAYMTTVHPDYATLAARIAISNLHKQTTKQFSKVIEDLHDWINPATGKHAPMISDEI 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
Y+I+M+N L+S I+YDRDF Y YFGFKTLERSYLL++ G+V ERPQH++MRVA+GIH
Sbjct: 121 YNIVMENKDTLNSAIVYDRDFQYTYFGFKTLERSYLLRLNGEVAERPQHLVMRVALGIHG 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI+S +KTY++MS R+FTHASPTLFNAGTP Q+SSCFL+ MKDDSIEGIYDTLKECA+
Sbjct: 181 SDIESVLKTYNLMSLRYFTHASPTLFNAGTPHPQMSSCFLIAMKDDSIEGIYDTLKECAM 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+G+ ++NIR+TGSYI GTNGTSNG++PM+RVFN+TARYVDQGG KR GAFA++
Sbjct: 241 ISKTAGGVGLHINNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALF 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWHADIF+F+D+RK HGKEE RARDLF ALW+PDLFM+RVQ +G W+LF P+ APGL
Sbjct: 301 LEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG EFE LYT+YE+EG+ K ++AQ LW+ IL++Q ETGTP+M++KD CN+K+NQQNL
Sbjct: 361 DVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNL 419
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIKSSNLC E+++Y+SP ETAVCNLASIALP +V S K +
Sbjct: 420 GTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEV--------------SEDGKTASY 465
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+FE+L E+ ++T NLN++ID NYYPV AR SN++HRPI +GVQGLADT+++L +PF+S
Sbjct: 466 NFERLHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFES 525
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIY+ L S E+A +EG Y T+ GSP SKGILQ DMW P WDW
Sbjct: 526 EEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDW 585
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
LR I K+G+RNSL +APMPTASTSQILG NECFEP TSN+YSRRVLSGEF VVN +L
Sbjct: 586 ETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYL 645
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L DL ++G+W +K +I +GS+Q +P +P+ELK +YKTVWEI QKT+++MA DR Y
Sbjct: 646 LRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIY 705
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
ID S SLN+ + P+ GK+TS+HF+ W +GLKTGMYYLR++AA+ AI+FT+D V
Sbjct: 706 IDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQEV 760
>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1
Length = 806
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/824 (61%), Positives = 630/824 (76%), Gaps = 38/824 (4%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYV+ R G++E + FD+I R+++LSYGL E DP V+Q V G+Y G+ T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLH-ELVDPARVTQGVINGMYSGIKTCELDELA 59
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
A+T A M T HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ +V
Sbjct: 60 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDVRGRPASLISKEV 118
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YD I+ + RL+ EI Y RDF+YDYFGFKTLERSYLL++ K++ERPQH+LMRV++GIH
Sbjct: 119 YDFILLHKDRLNKEIDYTRDFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPR Q+SSCFL+ MK DSIEGI++TLK+CA+
Sbjct: 179 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG+FAVY
Sbjct: 239 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSFAVY 298
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
+EPWH+DIFEFLDLRKNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE PGL+
Sbjct: 299 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 358
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LYTKYE+E KK V AQ+LWF IL+SQIETG PYML+KD+CN KSNQ+NL
Sbjct: 359 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNL 418
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLC E+I+YTSP E AVCNLASIAL ++V + + F
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV------------------DLEKKEF 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL P++S
Sbjct: 461 NFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYES 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDR-WD 599
A++LNK IFET+YY AL S E+A+ GPYE+Y GSP S+GILQ DMW ++ WD
Sbjct: 521 DAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L+ I K+G+RNSLL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN H
Sbjct: 581 WDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DL + GLW +K ++I +GS+Q I +IP++LK +YKTVWEIKQK ++DMA DRG
Sbjct: 641 LLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGI 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNI++ +P F KL+S+HF+ W +GLKTG YYLR++AA DAIKFTVDT V K
Sbjct: 701 FIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNA 760
Query: 780 PKVTDDD---------------DAKMAQMVCSL--TNREECMAC 806
K+ + D ++ + Q VC L N E+C+ C
Sbjct: 761 VKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCLMC 804
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/786 (62%), Positives = 608/786 (77%), Gaps = 22/786 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+ +H DP+ ++ KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AE AA TT HPDYA LAARI VSNLHK TKK FSE ++D++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI+ K +L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRVAVGIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIYDTLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G A+Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+DI FLDL+KN G EEHR RDLF ALW+PDLFM+RV+ +G WSL CP+E PGL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFERLYT YE+E + K +++A+ +W I++SQIETGTP++L+KD CNKKSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+IQY E AVCNLAS+AL +V + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL PFDS
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S E+A +EGPY+TY GS S GILQ D+W V PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L LTE LW+ IKN+I+ D GS+Q +PE++K +YKT+WEI QKT++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQS+NIH+ P++ KLTS+HF+ W GLKTGMYYLR++ A+ I+FT+D +K P
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKIKP-P 758
Query: 781 KVTDDD 786
V D +
Sbjct: 759 VVCDSE 764
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/787 (62%), Positives = 608/787 (77%), Gaps = 23/787 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+ +H DP+ ++ KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AE AA TT HPDYA LAARI VSNLHK TKK FSE ++D++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI+ K +L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRVAVGIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIYDTLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G A+Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+DI FLDL+KN G EEHR RDLF ALW+PDLFM+RV+ +G WSL CP+E PGL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFERLYT YE+E + K +++A+ +W I++SQIETGTP++L+KD CNKKSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+IQY E AVCNLAS+AL +V + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL PFDS
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S E+A +EGPY+TY GS S GILQ D+W V PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L LTE LW+ IKN+I+ D GS+Q +PE++K +YKT+WEI QKT++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQS+NIH+ P++ KLTS+HF+ W GLKTGMYYLR++ A+ I+FT+D +K P
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKIK--P 757
Query: 781 KVTDDDD 787
V D +
Sbjct: 758 LVVCDSE 764
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/787 (62%), Positives = 608/787 (77%), Gaps = 23/787 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+ +H DP+ ++ KV G+Y GVTT +LD LA
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AE AA TT HPDYA LAARI VSNLHK TKK FSE ++D++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMEDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
DI+ K +L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRVAVGIH+
Sbjct: 121 MDIVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIYDTLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G A+Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGISNGIIPMLRVYNNTARYIDQGGNKRPGVMAIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+DI FLDL+KN G EEHR RDLF ALW+PDLFM+RV+ +G WSL CP+E PGL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFERLYT YE+E + K +++A+ +W I++SQIETGTP++L+KD CNKKSNQQNL
Sbjct: 361 NVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+IQY E AVCNLAS+AL +V + R F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--------------IDGR------F 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL PFDS
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S E+A +EGPY+TY GS S GILQ D+W V PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L LTE LW+ IKN+I+ D GS+Q +PE++K +YKT+WEI QKT++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMADGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQS+NIH+ P++ KLTS+HF+ W GLKTGMYYLR++ A+ I+FT+D +K P
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKIK--P 757
Query: 781 KVTDDDD 787
V D +
Sbjct: 758 LVVCDSE 764
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/787 (62%), Positives = 605/787 (76%), Gaps = 23/787 (2%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
M+V+KR+G +E V FDKIT+R++KL YGL+ +H DP+ ++ KV G+Y GVTT +LD L
Sbjct: 1 MFVIKRNGYKENVMFDKITSRIRKLCYGLNTDHIDPIKIAMKVIQGIYNGVTTVELDTLT 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
AE AA TT HPDYA LAARI VSNLHK TKK FSE +KD++N+ N ++G +P+I+
Sbjct: 61 AEIAATCTTQHPDYAILAARIAVSNLHKETKKLFSEVMKDLFNYVNPKNGKHSPIISSIT 120
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
D++ K +L+S IIY+RDF Y+YFGFKTLE+SYLLK+ K+VERPQHMLMRVAVGIH+
Sbjct: 121 MDVVNKYKDKLNSVIIYERDFSYNYFGFKTLEKSYLLKINNKIVERPQHMLMRVAVGIHQ 180
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DIDSAI+TY+++S++WFTHASPTLFNAGT R Q+SSCFL+ M DDSIEGIYDTLK CA+
Sbjct: 181 WDIDSAIETYNLLSEKWFTHASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCAL 240
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK AGGIG+S+ NIRA+GSYI GTNG SNGI+PMLRV+N+TARY+DQGG KR G +Y
Sbjct: 241 ISKMAGGIGLSISNIRASGSYISGTNGASNGIIPMLRVYNNTARYIDQGGNKRPGVMTIY 300
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH+DI FLDL+KN G EEHR RDLF ALW+PDLFM+RV+ +G WSL CP+E PGL
Sbjct: 301 LEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMCPDECPGLD 360
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFERLYT YE+E + K +++A+ +W I++SQIETGTP++L+KD CNKKSNQQNL
Sbjct: 361 NVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNL 420
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLCTE+IQY E AVCNLASIAL +V + F
Sbjct: 421 GTIKCSNLCTEIIQYADANEVAVCNLASIALNMFVID--------------------GQF 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF KL +V ++ NLNKIID+NYYP+ A SN RHRPIGIGVQGLAD FILL PFDS
Sbjct: 461 DFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDS 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDW 600
EAQ LNK IFETIYY AL S E+A +EGPY+TY GS S GILQ D+W V PSD W+W
Sbjct: 521 LEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNW 580
Query: 601 GGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL 660
L+D I G+RNSLLVAPMPTAST+QILGNNE EPYTSNIY+RRVLSGEF VVN HL
Sbjct: 581 EPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHL 640
Query: 661 LHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720
L LTE LW+ IKN+I+ D GS+Q +PE++K +YKT+WEI QKT++ MA DRG +
Sbjct: 641 LRVLTERKLWNDEIKNRIMVDGGSIQNT-NLPEDIKRVYKTIWEIPQKTIIKMAADRGAF 699
Query: 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP 780
ID SQS+NIH+ P++ KLTS+HF+ W GLKTGMYYLR++ A+ I+FT+D +K P
Sbjct: 700 IDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKIK--P 757
Query: 781 KVTDDDD 787
V D +
Sbjct: 758 LVVCDSE 764
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR1 PE=3 SV=1
Length = 804
Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/823 (59%), Positives = 614/823 (74%), Gaps = 38/823 (4%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYV+ R G++E + FD+I R+++LSYGL P V+Q V G+Y + T +LDELA
Sbjct: 1 MYVLNRKGEEEDISFDQILKRIQRLSYGLHKLGEYPACVTQGVINGMYSSIKTCELDELA 60
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
A+T A M T HPD++ LAARI NLHKNT +E + +Y Y + G A LI+ +V
Sbjct: 61 AQTCAYMATTHPDFSILAARITTDNLHKNTSDDVAEVAEALYT-YKDGRGRPASLISKEV 119
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YD I+ + RL+ EI Y F+YDYFGFKTLERSYLL++ K++ERPQH+LMRV++GIH
Sbjct: 120 YDFILLHKVRLNKEIDYTTHFNYDYFGFKTLERSYLLRINNKIIERPQHLLMRVSIGIHI 179
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DDID A++TYH+MSQ++FTHA+PTLFN+GTPR Q+SSCFL+ MK DSIEGI++TLK+CA+
Sbjct: 180 DDIDKALETYHLMSQKYFTHATPTLFNSGTPRPQMSSCFLLSMKADSIEGIFETLKQCAL 239
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGGIGV+V +IR SYIRGTNG SNG+VPMLRVFNDTARYVDQGGGKRKG++AVY
Sbjct: 240 ISKTAGGIGVAVQDIRGQNSYIRGTNGISNGLVPMLRVFNDTARYVDQGGGKRKGSYAVY 299
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
+EPWH+DIFEFLDLRKNHGKEE RARDLFYA+WVPDLFM+RV+ N W+L CPNE PGL+
Sbjct: 300 IEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMCPNECPGLS 359
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
+ WG EFE+LYTKYE+E KK V AQ+LWF IL+SQIETG P L+KD+CN K +NL
Sbjct: 360 ETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCNAKP-IKNL 418
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTIK SNLC E+I+YTSP E AVCNLASIAL ++V + + F
Sbjct: 419 GTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFV------------------DLEKKEF 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
+F+KL E+T I+T NL+KII+ NYYPV+ A+ SN RHRPIGIGVQGLADTF+LL ++S
Sbjct: 461 NFKKLYEITKIITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYES 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDR-WD 599
A++LNK I+ET+YY AL S + + GPYE+Y GSP S+GILQ DMW ++ WD
Sbjct: 521 DAAKELNKRIYETMYYAALEMSVD-WLQSGPYESYQGSPGSQGILQFDMWNAKVDNKYWD 579
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L+ I+K G+RN LL+APMPTASTSQILGNNE FEPYTSNIY RRVLSGEF VVN H
Sbjct: 580 WDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPH 639
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL DL + GLW +K ++I +GS+Q I +IP++LK +YKTVWEIKQK ++DMA DRG
Sbjct: 640 LLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGY 699
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
+ID SQSLNI++ +P F KL+S+HF+ W +GLKTG YYLR++AA DAIKFTVDT V K
Sbjct: 700 FIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNA 759
Query: 780 PKVTDDDDAKMAQMVCSLT----------------NREECMAC 806
K+ + D ++ + V T N E+C+ C
Sbjct: 760 VKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQCLMC 802
>sp|O61065|RIR1_CRYPV Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium
parvum GN=RNR1 PE=3 SV=2
Length = 803
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/821 (59%), Positives = 617/821 (75%), Gaps = 35/821 (4%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYVV R G++E V FD+I +R+ KLSYGL DP V+Q V G+Y G+ TS+LDELA
Sbjct: 1 MYVVNRKGEEEPVSFDQILSRITKLSYGLH-PLVDPARVTQAVINGLYSGIKTSELDELA 59
Query: 61 AETAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
++T A M H D++ LAARI SNLHKNT + +YN + + G APLI+ V
Sbjct: 60 SQTCAYMAATHNDFSKLAARISTSNLHKNTSSDIGDVASQLYN-FKDNQGCPAPLISKPV 118
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
YD IM+N R++S+I + +DF+YDYF FKTLERSYLLK+ KVVERPQH+LMRV+ GIH
Sbjct: 119 YDFIMENRERINSKIDFSKDFEYDYFAFKTLERSYLLKIDNKVVERPQHLLMRVSCGIHC 178
Query: 181 DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240
DI++A++TY ++SQ++FTHA+PTLFN+GTPR Q+SSCFL+ + +DSI GI+DTL +CA
Sbjct: 179 GDIEAALETYELLSQKYFTHATPTLFNSGTPRPQMSSCFLLRIPEDSINGIFDTLTKCAN 238
Query: 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY 300
ISK+AGG+GV+V NIR TGSYIRGTNG SNG++PMLRV+NDTARY+DQGGGKRKGA A+Y
Sbjct: 239 ISKTAGGLGVAVSNIRGTGSYIRGTNGRSNGLIPMLRVYNDTARYIDQGGGKRKGAIAIY 298
Query: 301 LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360
LEPWH D+ EF+++RKNHGKEE R RDLF ALWVPDLFMERV+ + W+L CP+E GL
Sbjct: 299 LEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDECRGLQ 358
Query: 361 DCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNL 420
D WG +F++LY +YEK+G+ +K ++AQ LWF IL++QIETGTP++ +KD N KSNQ+NL
Sbjct: 359 DVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAANSKSNQKNL 418
Query: 421 GTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
GTI SSNLCTE+I+YTS E AVCNLASI LP++V + N+ F
Sbjct: 419 GTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDK------------------NNKTF 460
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF+KL EVT ++T NLNK+IDV YY ++ ++SNLRHRP+GIG+QGLAD F++L MP++S
Sbjct: 461 DFDKLKEVTKVITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYES 520
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNP-SDRWD 599
A++LNK IFE IYY AL S E+A + GPYETY GSP SKGILQ DMWGV P S D
Sbjct: 521 EGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCD 580
Query: 600 WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKH 659
W L+D ISK+G+RNSLL++PMPTASTSQILGNNE FEP+TSNIY RRVLSGEF VVN H
Sbjct: 581 WDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVVNPH 640
Query: 660 LLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719
LL+DL E+GLW +K II ++GS+Q I IPE+++ +YKTVWEIKQKT++DMA DRG
Sbjct: 641 LLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAADRGP 700
Query: 720 YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKEN 779
Y+ SQSLNIHM+ NF KL+S+HF+ W +GLKTG+YYLR+++A I+FTVD +LK
Sbjct: 701 YVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLLKSE 760
Query: 780 PKVTDDDDAKMAQ---------MVCSL-----TNREECMAC 806
K D + Q + C L + EECM C
Sbjct: 761 TKEKDSLETNKRQALEPEAQKLIACPLRPTNMKDDEECMMC 801
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/797 (58%), Positives = 590/797 (74%), Gaps = 38/797 (4%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAE 62
V KRDG E + +R+ L G+ + D + + V GV +G++TS LDEL AE
Sbjct: 8 VTKRDGSVEPYDEKVVRSRIVNLMSGIDSYYVDVDDLVRVVGEGVREGMSTSMLDELLAE 67
Query: 63 TAAAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYD 122
TAA T HPDY LA R+ V+ LHK T +S ++ + ++ H ++ + APLI+++++D
Sbjct: 68 TAAYCVTKHPDYGLLAGRLAVTALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWD 127
Query: 123 IIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQG-----KVVERPQHMLMRVAVG 177
I K++A L I Y+RDFD++YFG+KTLERSYLL+V +VVERPQ M +RVA+G
Sbjct: 128 IANKHSAALQQIINYERDFDFEYFGYKTLERSYLLRVHKGRGVMEVVERPQQMFLRVALG 187
Query: 178 IHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKE 237
IH +D++ +TY MSQ +FTHA+PTLFNAGTP Q+SSCFLV M++DSI+GIYDTLK+
Sbjct: 188 IHGEDLERVKETYDYMSQGFFTHATPTLFNAGTPFPQMSSCFLVAMREDSIDGIYDTLKQ 247
Query: 238 CAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297
CAIISKSAGGIG+ +HNIRA GSYI GTNGTSNG+VPMLRV+N+TARYVDQGGGKRKGAF
Sbjct: 248 CAIISKSAGGIGIHMHNIRAAGSYIAGTNGTSNGLVPMLRVWNNTARYVDQGGGKRKGAF 307
Query: 298 AVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAP 357
A+YLEPWHADIF FL L+KN GKE+ RARDLFY LW+PDLFMERV+S+G W+L PN AP
Sbjct: 308 AIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMDPNTAP 367
Query: 358 GLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQ 417
L+DC+G EF LY +YE+EG+ + +QAQ LWF IL+SQ+ETG P+ML+KD CN KSNQ
Sbjct: 368 FLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQ 427
Query: 418 QNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKN 477
+NLGTIK SNLCTE+++YTS E AVCNLASIALPR+V K+
Sbjct: 428 KNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFV--------------------KD 467
Query: 478 RYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMP 537
FD+ L EVT +VT NLN++ID N+YPV AR SNLRHRP+GIGVQGLAD F LL +P
Sbjct: 468 GAFDYVALKEVTKVVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLP 527
Query: 538 FDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMW------- 590
F EA++LN+ IFETIY A+ S+E+A ++GPYET+ GSP S+G LQ D+W
Sbjct: 528 FAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIR 587
Query: 591 GVNPSD------RWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644
G+N WDW L++ + K G+RNSLL+APMPTASTSQILGNNEC EP+TSNIY
Sbjct: 588 GMNEDSVHSHCGLWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIY 647
Query: 645 SRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWE 704
RRVLSGEF VVNKHL+ +L + LW+ ++ KII +GSV I +IPE ++ +YK VWE
Sbjct: 648 VRRVLSGEFPVVNKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWE 707
Query: 705 IKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764
I+QK L+DMA DRG YID SQSLN+ + P +LTS+HF++W +GLKTGMYYLRS+ AA
Sbjct: 708 IRQKDLIDMAADRGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAA 767
Query: 765 DAIKFTVDTSVLKENPK 781
DAIKFT+D +KE PK
Sbjct: 768 DAIKFTLDPKAMKELPK 784
>sp|Q8SR37|RIR1_ENCCU Ribonucleoside-diphosphate reductase large chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0920 PE=3 SV=1
Length = 768
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/779 (49%), Positives = 545/779 (69%), Gaps = 29/779 (3%)
Query: 9 KQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMT 68
K E + D I +R++ L + H D + +++ +G + +T + + +ETAA+M
Sbjct: 11 KSEKLGIDLIRSRIEGYVKDLKLRHVDVDELVERIVSGWCEDMTRKETIDYCSETAASMI 70
Query: 69 TNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNA 128
T HP+Y +++RI+VS +H+ T SF E IK + H ++++++Y II+++
Sbjct: 71 TKHPEYGQISSRIIVSYIHEITMDSFVEKIKYIQKHRG--------MVSEEMYGIILEHG 122
Query: 129 ARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIK 188
++ I Y+ DF + YFG TL +SYL+KV +++ERPQ M MRVA+ IHK D + +
Sbjct: 123 ETIEGMINYENDFLFSYFGILTLMKSYLIKVGEEIIERPQDMFMRVALQIHKTDFEKVRE 182
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGI 248
Y+++S +FTHA+PTL+N+ QL+SCFL+ ++DSIEG+Y + + AII+K +GGI
Sbjct: 183 VYNLLSGHYFTHATPTLYNSCLKNPQLASCFLITPREDSIEGVYHMINQAAIITKYSGGI 242
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADI 308
G+++H IR+ GS +R T G SNGI+P+++V N T RY++QG +R G+ A++LEPWH +I
Sbjct: 243 GLNLHGIRSKGSSLRSTGGRSNGIIPLIQVLNATKRYINQGAERRPGSIAIFLEPWHMEI 302
Query: 309 FEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFE 368
F+FL+LRKN G EE RARD+F ALW+ DLFMERV++N WSLFCP++A GL+D WG EF
Sbjct: 303 FDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFCPSQAVGLSDVWGEEFN 362
Query: 369 RLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNL 428
LY KYEK ++ VV AQ LW I+++QIETGTPYM +KD CN+ SNQQ+LGTIKSSNL
Sbjct: 363 ALYCKYEKT-ISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRLSNQQHLGTIKSSNL 421
Query: 429 CTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEV 488
C E+++Y+S ET+VCNLASI LP +V K+ +FDFE V
Sbjct: 422 CAEIVEYSSGEETSVCNLASICLPMFV--------------------KDGWFDFEAFRRV 461
Query: 489 TGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNK 548
I+T NLN++ID NYYPVE ARRSN+R+RPIGIGVQGLAD F +L + F+S A+ LN+
Sbjct: 462 VKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQ 521
Query: 549 DIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMIS 608
DIFE +YY A+ S E+A +EGP+ +Y GSP+SKGI ++ G S WDW GLR+ I
Sbjct: 522 DIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKASGNWDWEGLRERIR 581
Query: 609 KNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMG 668
++GVRNSLL+A MPTA TSQI GNNE FEP+ SNIY+RR +GEF +VN+HL++DL +G
Sbjct: 582 RHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRLG 641
Query: 669 LWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLN 728
LWS +KN +I ++GS+Q I IP E++ IYKT WEIK K+++D+A DR ++D SQSLN
Sbjct: 642 LWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSLN 701
Query: 729 IHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPKVTDDDD 787
I + +P + +LTS+HF+ + GLKTGMYYLR+R AIKFTVD + ++ +D D
Sbjct: 702 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSSMNDTD 760
>sp|Q7T6Y8|RIR1_MIMIV Ribonucleoside-diphosphate reductase large subunit OS=Acanthamoeba
polyphaga mimivirus GN=RNR1 PE=3 SV=2
Length = 881
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/825 (45%), Positives = 545/825 (66%), Gaps = 45/825 (5%)
Query: 7 DGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAA 66
+G + + + I ++K+ + + H D +++ + + T +D TA+
Sbjct: 75 NGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFPKLKSINTIKDIDNQIISTASE 134
Query: 67 MTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMK 126
M T+H DY +A I+++NLH NT F ET + +YN+ +E S AP+I++++Y+ I K
Sbjct: 135 MVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYNNKSE-SNKNAPIISENIYNFIKK 193
Query: 127 NAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIH--KDDID 184
+ ++ I YDRD++ FGF+TLE+SYL ++ K+VERPQH+ MRVA+ +H K+D+D
Sbjct: 194 HIKEINRVIRYDRDYNLTIFGFRTLEKSYLKRINKKIVERPQHLFMRVAITLHYRKNDLD 253
Query: 185 SAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKS 244
+TY +S+ +FTHA+PTLFNAGT QLSSCFL+ + DS+E I + KECA+ISK
Sbjct: 254 RIFETYKYLSKGYFTHATPTLFNAGTTHEQLSSCFLLGI-GDSLEEISECWKECALISKH 312
Query: 245 AGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPW 304
AGGIG+ + NIR G+YI T G + G+ +L +FND +RY +QGG KR G+FA+++EPW
Sbjct: 313 AGGIGIHMTNIRVEGAYIASTQGEAGGL-RVLTIFNDISRYANQGG-KRPGSFAIFIEPW 370
Query: 305 HADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWG 364
H DIF FLDL+KN G E RARDLF L + D+FMERV + +WSL CP++ P L + +G
Sbjct: 371 HGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLMCPSQCPNLLNKYG 430
Query: 365 TEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIK 424
EF + Y KYE EG K ++A +LWF+I++SQIETG PY++FKD N KSNQ N+G +
Sbjct: 431 DEFTKEYLKYESEGIYLKQIRAIDLWFKIMESQIETGVPYVMFKDAINDKSNQINIGVVN 490
Query: 425 SSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEK 484
SNLC E+++ + +VCNL+SI LPR+V+ ++ P+ F+++K
Sbjct: 491 GSNLCCEIVEVSDKNNFSVCNLSSICLPRFVK----IIDEVPT------------FNYQK 534
Query: 485 LAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQ 544
L +++ I+T NLN IID+N+YP++ R +NLR RPIGIGVQGLAD F + PFDS A+
Sbjct: 535 LFKISRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFAMFKTPFDSEIAR 594
Query: 545 QLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSD---RWDWG 601
LN+ IFETIYY AL S+++A G Y+TY GSP+S+G Q D+W + S WDW
Sbjct: 595 DLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFDLWNFDKSQLSGMWDWE 654
Query: 602 GLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLL 661
LR I +GVRNSL+ MPTASTSQI+G NEC EPYT NIYSR ++GE+ V+NKHL+
Sbjct: 655 LLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTENIYSRSTMAGEYFVINKHLI 714
Query: 662 HDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYI 721
DL E+G+W+ + + I Y GSV IP IP+ +KAIY+TVWEI QK++++MA DR ++
Sbjct: 715 KDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTVWEIPQKSIIEMAADRAPFV 774
Query: 722 DHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPK 781
D +QS+N+++D+P+F +L S F+AW +GLKTGMYYLRS+ A+ A +F +D +KE
Sbjct: 775 DQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKPASSANQFGIDIDKIKEIES 834
Query: 782 ---------------VTDDDDAKMAQMVCS-----LTNREECMAC 806
+T+ + +++ MVC L EC++C
Sbjct: 835 KNGIKKQEDTFDLTDLTNTINQQVSGMVCRFVPAHLRKPGECLSC 879
>sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-045 PE=3 SV=1
Length = 778
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 305/757 (40%), Positives = 431/757 (56%), Gaps = 80/757 (10%)
Query: 65 AAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDII 124
+A+T H DY++LAAR+ V LH++T SFS+ ++ ++ ++ D++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVAVGIHKD-- 181
K A DS I Y+RD+ G +T++ SYLLK + G ++ERPQ MRVA+ I+
Sbjct: 95 YKYKAIFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECA 239
+I + TY ++S+ THASPT+FNAGT + QLSSCFL+ + +D++E +YD +K
Sbjct: 155 VVNIKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 IISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
IIS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLDLRKNHGK-EEHR--ARDLFYALWVPDLFMERVQ------SNGLWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 273 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYL 332
Query: 351 FCPNEAPGLADCWGTE----------FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400
F P++AP L + E F++LY +Y E + V A+ + E K+ I+
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQV 392
Query: 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSP------TETAVCNLASIALPRY 454
G PY+ FKD N+KSN ++GTI +SNLC EV T P E VCNLA++ L +
Sbjct: 393 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEV---TIPCWEGDKAEQGVCNLAAVNLAAF 449
Query: 455 VREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSN 514
+RE G +D+ L E +G VTENL+ IID YYP E RRSN
Sbjct: 450 IRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSN 489
Query: 515 LRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYET 574
+RHRPIGIGV GLAD F L M F S EA +++ I +YY A+R S E+A +G + +
Sbjct: 490 MRHRPIGIGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPS 549
Query: 575 YHGSPVSKGILQPDMW--GVNPSDRWD---------------WGGLRDMISKNGVRNSLL 617
+ GS SKG+LQPD+W + S W+ W LR + + GVRN L
Sbjct: 550 FPGSAASKGLLQPDLWVRCGDLSSSWEERVAQTTQGVLTRKSWWQLR-LAAMQGVRNGYL 608
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNK 677
A MPTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ LW+ I+ +
Sbjct: 609 TALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQ 668
Query: 678 IIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFG 737
++ GS+Q I IP E++ YKT E+ QK L A R ++ S SLN + +P
Sbjct: 669 LLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELS 728
Query: 738 KLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
++ ++ W +GL TG YY A K + S
Sbjct: 729 QVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 765
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1
Length = 1047
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 300/839 (35%), Positives = 460/839 (54%), Gaps = 66/839 (7%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAE 62
V+ +DG + ++ ARL + E D L++ + Y G+ S++
Sbjct: 239 VLSKDGSTYMITHSQLLARLARACSRFP-ETTDAALLTDMAFSNFYSGIKESEVVLACIM 297
Query: 63 TAAAMTTNHPDYASLAARIVVSNLHKNT--KKSFSETIKDMYNHYNERSGLKAPLIADDV 120
A A PDYA +AA +++ ++K + E ++ +Y R K ++ D
Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALDRSRGDEDLEQVY-----RDHFKRYIMEGDS 352
Query: 121 YDI--IMKNAARLDS---EIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVA 175
Y + +KN LD+ + RD + Y G + L Y G+ +E PQ MRVA
Sbjct: 353 YRLNPELKNLFDLDALANAMDLSRDLQFSYMGIQNLYDRYFNHDDGRRLETPQIFWMRVA 412
Query: 176 VGIHKDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIY 232
+G+ + D AI Y+++S +T A+PTLFN+G +QLSSC+L ++DD + IY
Sbjct: 413 MGLALKEQDKTYWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDDLV-NIY 471
Query: 233 DTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
+ + A++SK AGGIG IRATG+ I+GTNG S G++P ++V NDTA V+QGG K
Sbjct: 472 KVISDNAMLSKWAGGIGNDWTAIRATGALIKGTNGKSQGVIPFIKVTNDTAVAVNQGG-K 530
Query: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFC 352
RKGA VYLE WH D +FL+LRKN G + RA D+ A W+PDLF +R+Q G W+LF
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLFS 590
Query: 353 PNEAPGLADCWGTEFERLYTKYEK-----EGKAKKVVQAQNLWFEILKSQIETGTPYMLF 407
P++ PGL D +G EFERLY +YE+ E + K V+A++LW ++L ETG P+M F
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 408 KDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPS 467
KD N +S Q + G ++ SNLCTE++ S TETAVCNL S+ L +++ + G+
Sbjct: 651 KDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHILDDGL------- 703
Query: 468 KLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
D EKL+E I L+ +ID+N+YP + A+ +N HR IG+GV G
Sbjct: 704 -------------DEEKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGF 750
Query: 528 ADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQ- 586
D L + + S EA + E I Y+A++ S +A G Y +Y GS +G+L
Sbjct: 751 QDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPI 810
Query: 587 -----------PDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D ++ S R DW +R +I ++G+RN L+A PTA+ S I+G +
Sbjct: 811 DTIQLLANYRGKDNLQMDTSVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQS 870
Query: 636 FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEEL 695
EP +++ + LSGEF + N +L+ L ++G+W + + + Y DGS+ +I ++P+ +
Sbjct: 871 IEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHI 930
Query: 696 KAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGM 755
K I+ T +EI+ + +++ A R +ID QSLN+++ QP+ KL++++ AW +GLKT
Sbjct: 931 KHIFLTAFEIEPEWILECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-T 989
Query: 756 YYLRSRAAADAIKFTVDTSVLKENPKVTDDDDAKMAQM--------VCSLTNREECMAC 806
YYLRS +A K VD + P+ + A + VCSL E C C
Sbjct: 990 YYLRSSSATTVEKSFVDINKRGIQPRWMKNKSASAGIVVERASKTPVCSL--EEGCEVC 1046
>sp|P0C8H9|RIR1_ASFWA Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-055 PE=3 SV=1
Length = 778
Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust.
Identities = 305/757 (40%), Positives = 431/757 (56%), Gaps = 80/757 (10%)
Query: 65 AAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDII 124
+A+T H DY++LAAR+ V LH++T SFS+ ++ ++ ++ D++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVAVGIHKD-- 181
K A DS I Y+RD+ G +T++ SYLLK + G ++ERPQ MRVA+ I+
Sbjct: 95 YKYKAIFDSYIDYNRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECA 239
+I + TY ++SQ THASPT+FNAGT + QLSSCFL+ + +D++E +YD +K
Sbjct: 155 VVNIKMILLTYDLLSQHIITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 IISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
IIS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLDLRKNHGK-EEHR--ARDLFYALWVPDLFMERVQ------SNGLWSL 350
YLE WH DIF FL++ + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 273 YLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYL 332
Query: 351 FCPNEAPGLADCWGTE----------FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400
F P++AP L + E F++LY +Y E + V A+ + K+ I+
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTVIQV 392
Query: 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSP------TETAVCNLASIALPRY 454
G PY+ FKD N+KSN ++GTI +SNLC EV T P E VCNLA++ L +
Sbjct: 393 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEV---TIPCWEGDKAEQGVCNLAAVNLAAF 449
Query: 455 VREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSN 514
+RE G +D+ L E +G VTENL+ IID YYP E RRSN
Sbjct: 450 IRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSN 489
Query: 515 LRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYET 574
+RHRPIGIGV GLAD F L + F S EA +++ I +YY A+R S E+A +G + +
Sbjct: 490 MRHRPIGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPS 549
Query: 575 YHGSPVSKGILQPDMW----GVNPS-------------DRWDWGGLRDMISKNGVRNSLL 617
+ GS SKG+LQPD+W + PS R W LR + + GVRN L
Sbjct: 550 FPGSAASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRNGYL 608
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNK 677
A MPTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ LW+ I+ +
Sbjct: 609 TALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQ 668
Query: 678 IIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFG 737
++ GS+Q I IP E++ YKT E+ QK L A R ++ S SLN + +P
Sbjct: 669 LLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELS 728
Query: 738 KLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
++ ++ W +GL TG YY A K + S
Sbjct: 729 QVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 765
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2
Length = 1047
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 299/839 (35%), Positives = 456/839 (54%), Gaps = 66/839 (7%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAE 62
V+ +DG + ++ A L + E D L++ Y G+ S++
Sbjct: 239 VLSKDGSTYTMTHSQLLAHLARACSRFP-ETTDAALLTDMAFANFYSGIKESEVVLACIM 297
Query: 63 TAAAMTTNHPDYASLAARIVVSNLHKNT--KKSFSETIKDMYNHYNERSGLKAPLIADDV 120
A A PDYA +AA +++ ++K K ++E ++ + R K + D
Sbjct: 298 AARANIEKEPDYAFVAAELLLDVVYKEALGKSKYAEDLEQAH-----RDHFKRYIAEGDT 352
Query: 121 YDIIMKNAARLDSEIIYD-----RDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVA 175
Y + + D + + D RD + Y G + L Y +G +E PQ MRVA
Sbjct: 353 YRLNAELKHLFDLDALADAMDLSRDLQFSYMGIQNLYDRYFNHHEGCRLETPQIFWMRVA 412
Query: 176 VGI---HKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIY 232
+G+ +D AI Y+++S +T A+PTLFN+G +QLSSC+L ++D+ + IY
Sbjct: 413 MGLALNEQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTVQDNLV-NIY 471
Query: 233 DTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
+ + A++SK AGGIG IRATG+ I+GTNG S G++P ++V NDTA V+QGG K
Sbjct: 472 KVIADNAMLSKWAGGIGNDWTAIRATGALIKGTNGRSQGVIPFIKVTNDTAVAVNQGG-K 530
Query: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFC 352
RKGA VYLE WH D +FL+LRKN G E RA D+ A W+PDLF +R+Q G W+LF
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFS 590
Query: 353 PNEAPGLADCWGTEFERLYTKYEK-----EGKAKKVVQAQNLWFEILKSQIETGTPYMLF 407
P++ PGL D +G EFERLY +YE+ E + K V+A++LW ++L ETG P+M F
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 408 KDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPS 467
KD N +S Q + G ++ SNLCTE++ S TETAVCNL SI L +++ G+
Sbjct: 651 KDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHIVGDGL------- 703
Query: 468 KLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGL 527
D EKL+E I L+ +ID+N+YP + A+ +N HR IG+GV G
Sbjct: 704 -------------DEEKLSETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGF 750
Query: 528 ADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQP 587
D L + + S EA + E I Y+A++ S +A G Y +Y GS +G+L
Sbjct: 751 QDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPI 810
Query: 588 DM------------WGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNEC 635
D ++ S R DW +R ++ ++G+R+ L+A PTA+ S I+G +
Sbjct: 811 DTIQLLANYRGEANLQMDTSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQS 870
Query: 636 FEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEEL 695
EP +++ + LSGEF + N +L+ L ++G+W + + + Y DGS+ +I +IP+ L
Sbjct: 871 IEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHL 930
Query: 696 KAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGM 755
K I+ T +EI+ + +++ A R +ID QSLN+++ QP+ KL++++ AW +GLKT
Sbjct: 931 KHIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-T 989
Query: 756 YYLRSRAAADAIKFTVDTSVLKENPKVTDDDDAKMAQM--------VCSLTNREECMAC 806
YYLRS +A K VD + P+ + A + VCSL E C AC
Sbjct: 990 YYLRSSSATTVEKSFVDINKRGIQPRWMKNKSASAGIIVERAKKAPVCSL--EEGCEAC 1046
>sp|P0C8H8|RIR1_ASFP4 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-057 PE=3 SV=1
Length = 778
Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust.
Identities = 304/757 (40%), Positives = 430/757 (56%), Gaps = 80/757 (10%)
Query: 65 AAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDII 124
+A+T H DY++LAAR+ V LH++T SFS+ ++ ++ ++ D++
Sbjct: 42 SALTILHYDYSTLAARLSVYQLHQSTASSFSKAVR-------LQAAQSCSRLSPQFVDVV 94
Query: 125 MKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVAVGIHKD-- 181
K A DS I Y RD+ G +T++ SYLLK + G ++ERPQ MRVA+ I+
Sbjct: 95 YKYKAIFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGK 154
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECA 239
+I + TY ++S+ THASPT+FNAGT + QLSSCFL+ + +D++E +YD +K
Sbjct: 155 VVNIKMILLTYDLLSRHIITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 213
Query: 240 IISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
IIS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 214 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIMLQNASQCYANQGG-LRPGAYAV 272
Query: 300 YLEPWHADIFEFLDLRKNHGK-EEHR--ARDLFYALWVPDLFMERVQ------SNGLWSL 350
YLE WH DIF FL++ + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 273 YLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGRWYL 332
Query: 351 FCPNEAPGLADCWGTE----------FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400
F P++AP L + E F++LY +Y E + V A+ + K+ I+
Sbjct: 333 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKAWFKTVIQV 392
Query: 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSP------TETAVCNLASIALPRY 454
G PY+ FKD N+KSN ++GTI +SNLC EV T P E VCNLA++ L +
Sbjct: 393 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEV---TIPCWEGDKAEQGVCNLAAVNLAAF 449
Query: 455 VREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSN 514
+RE G +D+ L E +G VTENL+ IID YYP E RRSN
Sbjct: 450 IRENG--------------------YDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSN 489
Query: 515 LRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYET 574
+RHRPIGIGV GLAD F L + F S EA +++ I +YY A+R S E+A +G + +
Sbjct: 490 MRHRPIGIGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPS 549
Query: 575 YHGSPVSKGILQPDMW----GVNPS-------------DRWDWGGLRDMISKNGVRNSLL 617
+ GS SKG+LQPD+W + PS R W LR + + GVRN L
Sbjct: 550 FPGSAASKGLLQPDLWVRCGDLIPSWEERVAQTTQGVLTRKSWRQLR-LAAIQGVRNGYL 608
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNK 677
A MPTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ LW+ I+ +
Sbjct: 609 TALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQ 668
Query: 678 IIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFG 737
++ GS+Q I IP E++ YKT E+ QK L A R ++ S SLN + +P
Sbjct: 669 LLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELS 728
Query: 738 KLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
++ ++ W +GL TG YY A K + S
Sbjct: 729 QVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 765
>sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-053 PE=3 SV=1
Length = 779
Score = 500 bits (1287), Expect = e-140, Method: Compositional matrix adjust.
Identities = 303/758 (39%), Positives = 428/758 (56%), Gaps = 82/758 (10%)
Query: 65 AAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDII 124
+A+T H DY++LAAR+ V LH++T SFS+ + + ++ ++ D++
Sbjct: 43 SALTILHYDYSTLAARLSVYLLHQSTASSFSKAV-------SLQAAQSCSRLSSHFVDVV 95
Query: 125 MKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVAVGIHKD-- 181
K A DS I Y RD+ G +T++ SYLLK + G ++ERPQ MRVA+ IH
Sbjct: 96 YKYKAIFDSYIDYSRDYKLSLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIHGMGR 155
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECA 239
++ + TY ++S+ THASPT+FNAGT + QLSSCFL+ + +D++E +YD +K
Sbjct: 156 VVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 214
Query: 240 IISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
IIS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 215 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGG-LRPGAYAV 273
Query: 300 YLEPWHADIFEFLDLRKNHGK-EEHR--ARDLFYALWVPDLFMERVQ------SNGLWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 274 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNRGDGTWYL 333
Query: 351 FCPNEAPGLADCWGTE----------FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400
F P++AP L + E F++LY +Y E + V A+ + E K+ ++
Sbjct: 334 FSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKEWFKTVVQV 393
Query: 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSP------TETAVCNLASIALPRY 454
G PY+ FKD N+KSN ++GTI +SNLC E+ T P E VCNLA++ L +
Sbjct: 394 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEI---TIPCWEGNEAEQGVCNLAAVNLAAF 450
Query: 455 VREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSN 514
+RE +D+ L E G VTENL+ IID YYP E RRSN
Sbjct: 451 IRESS--------------------YDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSN 490
Query: 515 LRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYET 574
+RHRPIGIGV GLAD F L M F S EA +++ I +YY A+R S E+A +G + +
Sbjct: 491 MRHRPIGIGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPS 550
Query: 575 YHGSPVSKGILQPDMWGVNPSD---RWD---------------WGGLRDMISKNGVRNSL 616
+ GS SKG+LQPD+W V D W+ W LR + + GVRN
Sbjct: 551 FPGSAASKGLLQPDLW-VRCGDLIPSWENRVAQTTQGVLTPKKWWQLR-LAAIQGVRNGY 608
Query: 617 LVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKN 676
L A MPTA++S G NECFEP+TSN+Y+RR LSGEF+++NK+L+ DL E+ LWS I+
Sbjct: 609 LTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQ 668
Query: 677 KIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNF 736
+++ GS+Q I IP E++ YKT E+ QK L A R ++ S SLN + +P
Sbjct: 669 QLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPEL 728
Query: 737 GKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
++ ++ W +GL TG YY A K + S
Sbjct: 729 SQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 766
>sp|P0C8H7|RIR1_ASFK5 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-057
PE=3 SV=1
Length = 779
Score = 499 bits (1285), Expect = e-140, Method: Compositional matrix adjust.
Identities = 302/755 (40%), Positives = 425/755 (56%), Gaps = 76/755 (10%)
Query: 65 AAMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDII 124
+A+T H DY++LAAR+ V LH++T SFSE + + ++ ++ D++
Sbjct: 43 SALTILHYDYSTLAARLSVYLLHQSTASSFSEAV-------SLQAAQSCSRLSPQFVDVV 95
Query: 125 MKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ-GKVVERPQHMLMRVAVGIHKD-- 181
K A DS I Y RD+ G +T++ SYLLK + G ++ERPQ MRVA+ I+
Sbjct: 96 YKYKAIFDSYIDYSRDYKLTLLGIETMKNSYLLKNKDGVIMERPQDAYMRVAIMIYGMGR 155
Query: 182 --DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECA 239
++ + TY ++S+ THASPT+FNAGT + QLSSCFL+ + +D++E +YD +K
Sbjct: 156 VVNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSSCFLLNV-NDNLENLYDMVKTAG 214
Query: 240 IISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299
IIS GGIG+ + IRA S+I G+ SNGI + + N + Y +QGG R GA+AV
Sbjct: 215 IISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGG-LRPGAYAV 273
Query: 300 YLEPWHADIFEFLDLRKNHGK-EEHR--ARDLFYALWVPDLFMERVQ------SNGLWSL 350
YLE WH DIF FL + + G+ E R A +L Y LWVPDLFME ++ +G W L
Sbjct: 274 YLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDRGDGTWYL 333
Query: 351 FCPNEAPGLADCWGTE----------FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400
F P++AP L + E F +LY +Y E + V A+ + E K+ I+
Sbjct: 334 FSPDQAPNLHKVFDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAKEIIKEWFKTVIQV 393
Query: 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVI---QYTSPTETAVCNLASIALPRYVRE 457
G PY+ FKD N+KSN ++GTI +SNLC E+ S E VCNLA++ L ++RE
Sbjct: 394 GNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAVNLAAFIRE 453
Query: 458 MGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRH 517
+D+ L E G VTENL+ IID YYP E RRSN+RH
Sbjct: 454 NS--------------------YDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRH 493
Query: 518 RPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHG 577
RPIGIGV GLAD F M F S EA +++ I +YY A+R S E+A +G + ++ G
Sbjct: 494 RPIGIGVFGLADVFASFKMKFGSPEAIAMDEAIHAALYYGAMRRSVELAKEKGSHPSFPG 553
Query: 578 SPVSKGILQPDMWGVNPSD---RWD---------------WGGLRDMISKNGVRNSLLVA 619
S SKG+LQPD+W V D W+ W LR + + GVRN L A
Sbjct: 554 SAASKGLLQPDLW-VRCDDLVFSWEERVAQTTQGVLTPKKWWQLR-LAAMQGVRNGYLTA 611
Query: 620 PMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKII 679
MPTA++S G NECFEP+TSN+Y+RR LSGEF+V+NK+L+ DL E+ LW+ I+ +++
Sbjct: 612 LMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLL 671
Query: 680 YDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKL 739
GS+Q I IP E++ YKT E+ QK L A R ++ S SLN + +P ++
Sbjct: 672 NAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQV 731
Query: 740 TSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTS 774
++ W +GL TG YY A K + S
Sbjct: 732 LTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNS 766
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
pneumoniae GN=nrdA PE=3 SV=1
Length = 1044
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 291/808 (36%), Positives = 445/808 (55%), Gaps = 68/808 (8%)
Query: 35 DPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAARIVVSNLHKNT---- 90
D L++ +Y G+ ++ A A PDYA +AA ++ S+L++ T
Sbjct: 268 DSQLLADMAFMNLYSGIKEDEVTTACIMAARANIEREPDYAFIAAELLTSSLYEETLGCS 327
Query: 91 --KKSFSETIKDMYNHY--NERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYF 146
+ SE K + Y N P + D YD+ L + RD + Y
Sbjct: 328 SQDPNLSEIHKKHFKEYILNGEEYRLNPQLKD--YDL-----DALSEVLDLSRDQQFSYM 380
Query: 147 GFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDS----AIKTYHMMSQRWFTHAS 202
G + L Y +G+ +E Q MRV++G+ ++ + AI Y+++S +T A+
Sbjct: 381 GVQNLYDRYFNLHEGRRLETAQIFWMRVSMGLALNEGEQKNFWAITFYNLLSTFRYTPAT 440
Query: 203 PTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYI 262
PTLFN+G +QLSSC+L +KDD + IY + + A++SK AGGIG ++RATG+ I
Sbjct: 441 PTLFNSGMRHSQLSSCYLSTVKDD-LSHIYKVISDNALLSKWAGGIGNDWTDVRATGAVI 499
Query: 263 RGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEE 322
+GTNG S G++P ++V NDTA V+QGG KRKGA VYLE WH D +FL+LRKN G E
Sbjct: 500 KGTNGKSQGVIPFIKVANDTAIAVNQGG-KRKGAMCVYLENWHLDYEDFLELRKNTGDER 558
Query: 323 HRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEK-----E 377
R D+ A W+PDLF +R++ G+W+LF P++ PGL + +G EFE+LY +YE+ E
Sbjct: 559 RRTHDINTASWIPDLFFKRLEKKGMWTLFSPDDVPGLHEAYGLEFEKLYEEYERKVESGE 618
Query: 378 GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTS 437
+ K V+A+ LW ++L ETG P++ FKD N +SNQ ++G ++ SNLCTE++ S
Sbjct: 619 IRLYKKVEAEVLWRKMLSMLYETGHPWITFKDPSNIRSNQDHVGVVRCSNLCTEILLNCS 678
Query: 438 PTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLN 497
+ETAVCNL SI L ++R N D EKL E I L+
Sbjct: 679 ESETAVCNLGSINLVEHIR--------------------NDKLDEEKLKETISIAIRILD 718
Query: 498 KIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYH 557
+ID+N+YP A+++NL HR +G+GV G D L + + S EA + + + E I Y+
Sbjct: 719 NVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVEFSDECSEIIAYY 778
Query: 558 ALRTSSEIAAREGPYETYHGSPVSKGILQPDMWG------------VNPSDRWDWGGLRD 605
A+ SS +A G Y +Y GS +G L D V+ S + DW +RD
Sbjct: 779 AILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVDTSSKKDWTPVRD 838
Query: 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLT 665
I K G+RNS ++A PTA+ S I+G + EP +++ + LSGEF + N +L+ L
Sbjct: 839 TIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNTYLIKKLK 898
Query: 666 EMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQ 725
E+GLW + + + Y DGS+ +I +IP LK ++ T +EI+ + +++ R +ID
Sbjct: 899 ELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQKWIDMGV 958
Query: 726 SLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPKVTDD 785
SLN+++ +P+ KL++++ AW +GLKT YYLRS+AA K +D + P+ +
Sbjct: 959 SLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSQAATSVEKSFIDINKRGIQPRWMKN 1017
Query: 786 DDAKMAQM-------VCSLTNREECMAC 806
A + + VCS+ E C +C
Sbjct: 1018 KSASTSIVVERKTTPVCSM--EEGCESC 1043
>sp|Q6R7H4|RIR1_OSHVF Ribonucleoside-diphosphate reductase large subunit OS=Ostreid
herpesvirus 1 (isolate France) PE=3 SV=1
Length = 835
Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust.
Identities = 272/775 (35%), Positives = 412/775 (53%), Gaps = 79/775 (10%)
Query: 67 MTTNHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPL------IADDV 120
+ +HPDYA LA R+ NT K+F++ + + E +G ++P+ ++D++
Sbjct: 77 LIPSHPDYAFLAGRVSAYMTQINTPKTFTDAVYGIQMAVGETNGFRSPMKPVKGGLSDEI 136
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK 180
D + ++ ARLD I RD+ ++Y G L +KV K+ ERPQ++ MRVA+ +
Sbjct: 137 VDFVNEHGARLDGMIDDVRDYSHNYMGITGLLNGVAIKVNKKLYERPQYVFMRVAMAMTD 196
Query: 181 DDIDSAI----KTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLK 236
++A+ +TY ++S + + ASP LFN GT + +SCFL+ M D+ + +
Sbjct: 197 LSSETALEDIWQTYMLISGQCLSMASPVLFNGGTSSSNTASCFLLDMGDNMVSITKKVAQ 256
Query: 237 ECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGA 296
+I+K+ GGIG++ +RATGS I G G S+GI L +F+ A+ VDQG KR GA
Sbjct: 257 TMTLIAKN-GGIGINFSKLRATGSKI-GMAGKSSGIGGKLNLFDRVAQSVDQGENKRPGA 314
Query: 297 FAVYLEPWHADIFEFLDLR-KNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNE 355
A YL WHAD++++L R G E ++ L L + DLFMERV+++ WSLF PN+
Sbjct: 315 IAGYLTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLFSPND 374
Query: 356 APGLADCWGTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPYMLFKDTCNKK 414
GL + +G +F R Y +E K K+ V A+ L+ +I TG PY+LFKD N++
Sbjct: 375 VVGLEELYGEKFVRAYRAHEANPKIKRTTVSARKLFSDIANMMWSTGEPYILFKDAVNER 434
Query: 415 SNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVR-EMGVPMESHPSKLVGSR 473
SN ++LGTIK+SNLC E++QY E AVCNLA+I + +V E G
Sbjct: 435 SNHKHLGTIKNSNLCCEIVQYCDTNEIAVCNLATICVSNFVNVETG-------------- 480
Query: 474 GSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPV--ETARR------------------- 512
DFE +A+ G+ + +N +ID Y + E R
Sbjct: 481 -----EIDFEGIADAAGVACKGINNLIDKQNYDLGNEQLMRLADERTEEVVEVNGIKFDA 535
Query: 513 -------SNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEI 565
SNL+HRP GIG+QGL D F+ L +P+DS A +L I E IYY A+R S +I
Sbjct: 536 KYNLVSYSNLKHRPQGIGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKI 595
Query: 566 AAREGPYETYH--GSPVSKGILQPDMWGVNPSDR------WDWGGLRDMISKNGVRNSLL 617
A +GPY +Y+ + +G LQ D DR ++W + K G+ NS++
Sbjct: 596 AEEKGPYPSYYWDNNTHREGKLQFDFLEGFDRDRDLTHELFNWREVLKKFEKFGINNSVV 655
Query: 618 VAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNK 677
A P+AS+SQ+ N E E TSN +++ + G+F+++NKHL DL ++G+W +
Sbjct: 656 TAQPPSASSSQLNDNVESIEAITSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGD 715
Query: 678 IIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFG 737
I +DGS+Q I +IP+ ++ IYKT EI K +V + +ID + S N+ + + N
Sbjct: 716 IEANDGSIQNIERIPKNIREIYKTAREIDHKAVVKICAAIQPFIDQTISKNMFVPK-NVD 774
Query: 738 KLTSLHFHAWLRG----LKTGMYYLRSRAAADAIKFT----VDTSVLKENPKVTD 784
L + G LKTGMYY R A F D + K P++ D
Sbjct: 775 NPVQLIMENVILGHKMKLKTGMYYTRGIPAMKQQNFGKMNFQDKDIGKPVPELVD 829
>sp|O66503|RIR1_AQUAE Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex
aeolicus (strain VF5) GN=nrdA PE=3 SV=1
Length = 801
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 263/838 (31%), Positives = 428/838 (51%), Gaps = 121/838 (14%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
MYV+KR G++E + +KI +K GL++ DP+ + G+TT ++ +L
Sbjct: 3 MYVIKRSGRKEKLDINKIRIAIKFACEGLNV---DPLELEADAQIQFRDGITTKEIQQLL 59
Query: 61 AETAA-AMTTNHPDYASLAARIVVSNLHKNTKKSFSETIKD---MYNHYNERS--GLKAP 114
+TAA ++ PD+ AAR+++ +L+K+ +++D Y YN ++
Sbjct: 60 IKTAAEKVSAERPDWTYTAARLLLYDLYKDVAHLRGYSLRDDLGKYKPYNRKNFYSFVKE 119
Query: 115 LIADDVY-DIIMKNAA-----RLDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVERP 167
+ +Y + +++N + +L + I +RD + Y G K L YL++ +G+V+E P
Sbjct: 120 YVEKGIYGEYLLENYSEEDFNKLANYIKPERDLYFTYTGIKILYDRYLVRDEEGRVIELP 179
Query: 168 QHMLMRVAVGIH-----KDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVC 222
Q M M +A+ + ++ + A K Y ++S+ T A+PTL NA P QLSSCF++
Sbjct: 180 QEMYMLIAMTLAVPEKPEERLKWAKKFYDVLSEHKVTVATPTLMNARRPFTQLSSCFVLT 239
Query: 223 MKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT 282
+ DD + I+D +K+ +ISK AGG+GV + IRATG+ IR G S+G++P++++ NDT
Sbjct: 240 VDDDLFD-IFDNVKKAGMISKFAGGLGVYLGKIRATGAPIRKFKGASSGVIPVVKLINDT 298
Query: 283 ARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERV 342
YVDQ G RKG+ ++ L+ WH DI +FL+++ N G E +A D+ A+ +PDLFM+R+
Sbjct: 299 MTYVDQ-LGMRKGSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRL 357
Query: 343 QSNGLWSLFCPN---------------------------------------EAPGLADCW 363
++ W+L P E GL D +
Sbjct: 358 KNREDWTLIDPYWARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFY 417
Query: 364 GTEFERLYTKYEKE--GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG 421
G EFE+ Y + E+ AKK V + LW +L ETG PY+ F+D N+K+ ++ G
Sbjct: 418 GEEFEKWYLELEENLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTG 477
Query: 422 TIKSSNLCTEVIQYTSPT--ETAVCNLASIALPRYVREMG-VPMESHPSKLVGSRGSKNR 478
+ SSNLC E++Q SP+ E V + + + Y +E G +P+ + S +G ++
Sbjct: 478 MVYSSNLCHEIVQTMSPSKHEKPVLDPETGEIT-YKKEAGDLPVCNLGSVNLGKVHTE-- 534
Query: 479 YFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPF 538
E++ EV ++ L+ +I++N+Y + A +N R+R IGIGV + G+ +
Sbjct: 535 ----EEIKEVLPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKW 590
Query: 539 DSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGIL------QPDMWGV 592
+S E + +FE I ++AL+ S E+A G Y+ + GS SKGIL + +
Sbjct: 591 ESEEHLKFADKLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGILFGRSVEEIEENSR 650
Query: 593 NPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652
+ W L + I K G+RN+ L+A MPT STS ILG +P + Y +SG
Sbjct: 651 QNGNNLPWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMSG- 709
Query: 653 FVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAI---YKTVWEIKQKT 709
+PQ+P E+ YKT + I +
Sbjct: 710 ----------------------------------ILPQVPPEVDRFYWHYKTAYTIDHEW 735
Query: 710 LVDMAVDRGCYIDHSQSLNIHMDQPNFG--KLTSLHFHAWLRGLKTGMYYLRSRAAAD 765
+ A R +ID +QSLN+ +D N +L+ L+ AW GLKT +YYLRSR+A D
Sbjct: 736 TIRAAAVRQKWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKT-IYYLRSRSAMD 792
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain J99) GN=nrdA PE=3 SV=1
Length = 788
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 264/822 (32%), Positives = 412/822 (50%), Gaps = 92/822 (11%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAE 62
VVKR+G+ E + KI K + L + V ++ +TT ++ + +
Sbjct: 4 VVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARL--QFRDKITTEEIQQTLIK 61
Query: 63 TAA-AMTTNHPDYASLAARIVVSNL-HKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
TA + + P+++ +A+R+ + +L HK + + +K+ + + E+ + +
Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKEYFENAEEKGRILKGF--KEK 119
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVAVGIH 179
+D+ L+S+I +RDF ++Y G KTL YLLK +E PQHM M +A+ +
Sbjct: 120 FDLEF-----LNSQIKPERDFQFNYLGIKTLYDRYLLKDANNHPIELPQHMFMSIAMFLA 174
Query: 180 KDDID---SAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLK 236
+++ + A++ Y ++S+ A+PTL NA T + QLSSC++ D+ IEGI+D+ K
Sbjct: 175 QNEQELNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDN-IEGIFDSYK 233
Query: 237 ECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGA 296
E A++SK GGIG +R+ GSYI G S G +P L++ ND A VDQ G RKGA
Sbjct: 234 EMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG-TRKGA 292
Query: 297 FAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEA 356
AVYLE WH D+ EF+DLRKN G E RA DLF ALWV DLFM+RV + +W+LF P E
Sbjct: 293 IAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFDPYEC 352
Query: 357 PGLADCWGTEFERLYTKYEKEGK-AKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKS 415
L + +G +FE+ Y +YEK+ K K+ + A++LW +IL + E G P++ FKD N+ +
Sbjct: 353 KDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNANRCN 412
Query: 416 NQQNLGTIKSSNLCTEVIQYTSPTETAV-CNLASIALPRYVREMGVPMESHPSKLVGS-- 472
+ G I+SSNLCTE+ Q T+P + A+ + + V +S+ +K
Sbjct: 413 PNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCANKLT 472
Query: 473 -----RGSK-----------------------NRYFDFEKLAEVTGIVTENLNKIIDVNY 504
+G K ++ E + V I+ L+ +ID+N+
Sbjct: 473 STDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEEDIKRVVPIMVRLLDNVIDLNF 532
Query: 505 YPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSE 564
YP + +NL++R IG+GV G A + + S E + + E I YHA+ TS+
Sbjct: 533 YPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSAN 592
Query: 565 IAAREGPYETYHGSPVSKGILQPDMWGVNP---------SDRWDWGGLRDMISKNGVRNS 615
+A +G Y+ + S SKGI D + DW GLR+ + NG+RN
Sbjct: 593 LAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLREKVKANGMRNG 652
Query: 616 LLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIK 675
L+A PT+S S ++G + EP + LSG VV
Sbjct: 653 YLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV------------------- 693
Query: 676 NKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPN 735
+P + E Y + ++I K L+ A R +ID QS+N+ + N
Sbjct: 694 ------------VPNLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQSINVFLRIEN 741
Query: 736 F-GK-LTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
GK L ++ AW GLK+ YYLRS + + K +D SV
Sbjct: 742 ASGKTLHEIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRSV 782
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1
Length = 788
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 264/827 (31%), Positives = 410/827 (49%), Gaps = 102/827 (12%)
Query: 3 VVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAE 62
VVKR+G+ E + KI K + L + V ++ +TT ++ + +
Sbjct: 4 VVKRNGRIEPLDITKIQKYTKDATDNLEGVSQSELEVDARL--QFRDKITTEEIQQTLIK 61
Query: 63 TAA-AMTTNHPDYASLAARIVVSNL-HKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120
TA + + P+++ +A+R+ + +L HK + + +K+ + + E+ + +
Sbjct: 62 TAVDKIDIDTPNWSFVASRLFLYDLYHKVSGFTGYRHLKEYFENAEEKGRILKGF--KEK 119
Query: 121 YDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVAVGIH 179
+D+ L+S+I +RDF ++Y G KTL YLLK +E PQHM M +A+ +
Sbjct: 120 FDLEF-----LNSQIKPERDFQFNYLGIKTLYDRYLLKDANNNPIELPQHMFMSIAMFLA 174
Query: 180 KDDIDS---AIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLK 236
+++ + A++ Y ++S+ A+PTL NA T + QLSSC++ D+ IEGI+D+ K
Sbjct: 175 QNEQEPNKIALEFYEVLSKFEAMCATPTLANARTTKHQLSSCYIGSTPDN-IEGIFDSYK 233
Query: 237 ECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGA 296
E A++SK GGIG +R+ GSYI G S G +P L++ ND A VDQ G RKGA
Sbjct: 234 EMALLSKYGGGIGWDFSLVRSIGSYIDGHKNASAGTIPFLKIANDVAIAVDQLG-TRKGA 292
Query: 297 FAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEA 356
AVYLE WH D+ EF+DLRKN G E RA DLF ALWV DLF++RV + +W+LF P E
Sbjct: 293 IAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFDPYEC 352
Query: 357 PGLADCWGTEFERLYTKYEKEGK-AKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKS 415
L + +G +FE+ Y +YEK+ K K+ + A++LW +IL + E G P++ FKD N+ +
Sbjct: 353 KDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNANRCN 412
Query: 416 NQQNLGTIKSSNLCTEVIQYTSP------------------------------------T 439
+ G I+SSNLCTE+ Q T+P T
Sbjct: 413 PNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCANKLT 472
Query: 440 ETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKI 499
T + I + V + G + + + S+ + E + V I+ L+ +
Sbjct: 473 STDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTE-----EDIKRVVPIMVRLLDNV 527
Query: 500 IDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHAL 559
ID+N+YP + +NL++R IG+GV G A + + S E + + E I YHA+
Sbjct: 528 IDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAI 587
Query: 560 RTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNP---------SDRWDWGGLRDMISKN 610
TS+ +A +G Y+ + S SKGI D + DW GLR+ + N
Sbjct: 588 DTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLREKVKAN 647
Query: 611 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
G+RN L+A PT+S S ++G + EP + LSG VV
Sbjct: 648 GMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVV-------------- 693
Query: 671 SPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIH 730
+P + E Y + ++I K L+ A R +ID QSLN+
Sbjct: 694 -----------------VPNLNVETWNFYTSAYDIDAKDLIKAAAVRQKWIDQGQSLNVF 736
Query: 731 MDQPNF-GK-LTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775
+ N GK L ++ AW GLK+ YYLRS + + K +D SV
Sbjct: 737 LRIENASGKTLHDIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRSV 782
>sp|O83972|RIR1_TREPA Ribonucleoside-diphosphate reductase subunit alpha OS=Treponema
pallidum (strain Nichols) GN=nrdA PE=3 SV=1
Length = 845
Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 215/731 (29%), Positives = 356/731 (48%), Gaps = 75/731 (10%)
Query: 58 ELAAETAAAMTTNH-PDYASLAARIVV--------SNLHKNTKKSFSETIKDMYNHYNER 108
+L + A +T P + +AAR+++ ++L K SF E I Y E
Sbjct: 153 QLLIKAAVELTAQEAPQWELIAARLLMLDFSLALGTSLEKLNIHSFYEKIT-----YLEE 207
Query: 109 SGLKAPLIADDVYDIIMKNAARLDSEIIY---DRDFDYDYFGFKTLERSYLLKVQGKV-V 164
+GL VY + A ++ Y RD + Y + R Y+++ + V +
Sbjct: 208 AGLYG------VYIRTHYSRAEIEEAATYLECSRDKLFTYSSLDMILRRYVIRTRAHVPL 261
Query: 165 ERPQHMLMRVAVGIH----KDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFL 220
E PQ M + +A+ + +D + + Y ++S+ T A+PTL NA P QLSSCF+
Sbjct: 262 ETPQEMFLGIALHLAMNETQDRMQWVKRFYTVLSKLQVTVATPTLSNARKPFHQLSSCFV 321
Query: 221 VCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFN 280
+ D S++GIY ++ + +SK GG+G+ +RA G+ IRG G + GI+ +++ N
Sbjct: 322 DTVPD-SLDGIYRSIDNFSQVSKFGGGMGLYFGKVRAVGAPIRGFQGAAGGILRWIKLAN 380
Query: 281 DTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFME 340
DTA VDQ G R+G+ AVYL+ WH DI EFL LR N+G + +A D+F A+ PDLF +
Sbjct: 381 DTAVAVDQLG-VRQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWK 439
Query: 341 RVQSN--GLWSLFCPNE-----APGLADCWGTEFERLYTKYEKEGK-AKKVVQAQNLWFE 392
V+ N W L CP+E L D + E+E+ Y K+ + +K+ + + L
Sbjct: 440 TVRDNLGASWYLMCPHEILTVKGYALEDFYAEEWEKRYWDCVKDARISKRTIPIKELVRL 499
Query: 393 ILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALP 452
+LKS +ETGTP+ ++D N+ + + G I SNLCTE+ Q S + +
Sbjct: 500 VLKSVVETGTPFAFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQ 559
Query: 453 RYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARR 512
+ V + P + L S D ++L EV + L+ +ID+ YYPV A+
Sbjct: 560 KVVVQTTRPGDFVVCNLASLVLSNIDLSDDKELREVVRVAVRALDNVIDLTYYPVPYAQV 619
Query: 513 SNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPY 572
+N +R IG+GV G G+ ++S E IFE I A+ S IA +G Y
Sbjct: 620 TNAYYRAIGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKGAY 679
Query: 573 ETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGN 632
+ GS G V+ DW L+ ++ +G+RN L+A PT+STS I G
Sbjct: 680 GCFTGSDWCTGAYFRKRGYVSE----DWQRLQREVATHGMRNGYLLAVAPTSSTSIIAGT 735
Query: 633 NECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIP 692
+P ++ ++ L + + G+ P + P +
Sbjct: 736 TAGVDP----------------IMKQYFLEE--KKGMLMPRVA-------------PSLS 764
Query: 693 EELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQP-NFGKLTSLHFHAWLRGL 751
++ +YK+ ++Q+ + A R +ID +QS+N+++ ++ L+ +AW G+
Sbjct: 765 QKTCPLYKSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFTLKQVLDLYVYAWEVGM 824
Query: 752 KTGMYYLRSRA 762
K+ +YY+RS++
Sbjct: 825 KS-LYYVRSQS 834
>sp|P50646|RIR1_BHV1C Ribonucleoside-diphosphate reductase large subunit OS=Bovine
herpesvirus 1.1 (strain Cooper) GN=UL39 PE=3 SV=1
Length = 787
Score = 284 bits (726), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 200/661 (30%), Positives = 322/661 (48%), Gaps = 68/661 (10%)
Query: 152 ERSYLLKVQGKVVERPQHMLMRVAVG-----IHKDDIDSAI----KTYHMMSQRWFTH-- 200
E YL K++G +E +R+A + + A+ T+ + + T
Sbjct: 142 EEMYLAKLEGGAIESMGQFFVRIAATAATWTMREPAFGRALVGEGATWCAVFNAYLTALY 201
Query: 201 ------ASPTLFNAGTPRAQLSSCFLVCMK-DDSIEGIYDTLKECAIISKSAGGIGVSVH 253
A+P + AG R L+SC+L+ + S E + E A I + GGIG+S
Sbjct: 202 RQLVVPATPIMLFAGRARGSLASCYLLNPQVSSSTEAVEAITTEVARILLNRGGIGISFQ 261
Query: 254 NI-RATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFL 312
+ RA + GI+ L++ + A ++ +R VYLEPWH D+ L
Sbjct: 262 SFDRAV------SRDCKRGIMGALKLLDSMAMAINSDS-ERPTGICVYLEPWHCDVRAVL 314
Query: 313 DLRKNHGKEEH-RARDLFYALWVPDLFMERV------QSNGLWSLFCPNEAPGLADCWGT 365
++R ++E R +LF LWVPDL +R + +W+LF + A L+ G
Sbjct: 315 NMRGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREGVVWTLF-DDRASHLSRLHGP 373
Query: 366 EFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG-TIK 424
F Y + E+EG + V Q+L F I++S + TG+P+++FKD CN+ + G +
Sbjct: 374 AFTAEYERLEREGLGVETVPVQDLAFLIVRSIVMTGSPFVMFKDACNRHYHMDTAGDALT 433
Query: 425 SSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEK 484
SNLCTE++Q SP VCNLAS+ LPR VRE G G+ FDF
Sbjct: 434 GSNLCTEIVQRASPDAHGVCNLASVNLPRCVRE-------------GEGGALA--FDFAA 478
Query: 485 LAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQ 544
L+ +N ++ YP E A R RHR +GIG QGL + LGM S A+
Sbjct: 479 LSTAAATAAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDMLSPAAR 538
Query: 545 QLNKDIFETIYYHALRTSSEIAARE-GPYETYHGSPVSKGILQPDMW-GVNPSDRWDWGG 602
+LN +I E + + TS+ + P+E + S ++G++ D + GV S W
Sbjct: 539 RLNVEIAERLLLAVMATSATLCEYGCAPFEDFARSKFARGLMPFDGYEGVVLSLPRAWAR 598
Query: 603 LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFV-------- 654
LR+ ++++G+ N+ VA MPT S+SQ+ +E F P +N++S+ +SGE +
Sbjct: 599 LREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLPLMR 658
Query: 655 VVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMA 714
+ KH + + +G + + + P P A +KT +E Q+ L+D+
Sbjct: 659 ALRKHFTREASRLGAVRALDREQWSVAAALGDLAPGHP---LAKFKTAFEYDQERLIDLC 715
Query: 715 VDRGCYIDHSQSLNIHMDQPNFGK-----LTSLHFHAWLRGLKTGMYYLRSRAAADAIKF 769
DR ++D SQS+++ + +P GK + +L +A+ +GLKTG+YY + R A + F
Sbjct: 716 ADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNNGVF 775
Query: 770 T 770
T
Sbjct: 776 T 776
>sp|P50642|RIR1_EHV4 Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 4 (strain 1942) PE=3 SV=1
Length = 789
Score = 283 bits (723), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 196/664 (29%), Positives = 325/664 (48%), Gaps = 80/664 (12%)
Query: 152 ERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMS---------QRWFTH-- 200
E YL K++G +E +R+A ++ ++S + +FT
Sbjct: 140 EEMYLAKMRGGRLESMGQFFLRLATTATHYTMEQPAMARVLVSGEVGWTYIFRAFFTALA 199
Query: 201 ------ASPTLFNAGTPRAQLSSCFLVCMK-DDSIEGIYDTLKECAIISKSAGGIGVSVH 253
A+P + G ++SC+L+ + D I ++E I + GGIG+S+
Sbjct: 200 GQVVIPATPIMLFGGRDCGSMASCYLLNPRVTDMNSAIPALMEEVGPILCNRGGIGLSLQ 259
Query: 254 NIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLD 313
T G S G++ +L++ + ++ G +R VY EPWHADI L+
Sbjct: 260 RFNTPP-----TEGCSRGVMALLKLLDSMTMAINSDG-ERPTGVCVYFEPWHADIRAILN 313
Query: 314 LRKNHGKEEH-RARDLFYALWVPDLFMERVQ------SNGLWSLFCPNEAPGLADCWGTE 366
+R ++E R ++F +W PDLF +R Q S +W+LF + A L +G +
Sbjct: 314 MRGMLARDETVRCDNIFACMWTPDLFFDRYQRYVDGESGIMWTLF-DDTASHLCHMYGND 372
Query: 367 FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKS--NQQNLGTIK 424
F R Y + E+ G + Q++ F I++S + TG+P+++FKD CN+ + + G I
Sbjct: 373 FTREYERLERCGFGIDAIPIQDMAFIIVRSAVMTGSPFLMFKDACNRHYHFDMRQRGAIM 432
Query: 425 SSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEK 484
SNLCTE+IQ+ T+ VCNLASI LP+ + +P P + G YFDF
Sbjct: 433 GSNLCTEIIQHADETQNGVCNLASINLPKC---LALP----PPNIAGVP-----YFDFAA 480
Query: 485 LAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQ 544
L T +N ++ + YP +++ +R +G+G+QGL TF++L + S EA
Sbjct: 481 LGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLDLDMASPEAH 540
Query: 545 QLNKDIFETIYYHALRTSSEIAAR-EGPYETYHGSPVSKGILQPDMW-GVNPSDRWDWGG 602
QLNK I E + ++++ S+ + P++ + S S+G L D + V ++R W
Sbjct: 541 QLNKQIAERLLLNSMKASATLCKLGMQPFKGFEDSKYSRGELPFDAYPNVTLTNRNAWRR 600
Query: 603 LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLH 662
LR I + G+ NS VA MPT S+SQ+ ++E F P +N++S+ +GE + N L+
Sbjct: 601 LRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNVLLMR 660
Query: 663 DL----------------TEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIK 706
+ E WS + G+ +P + L +KT +E
Sbjct: 661 TIRSIFPQECARLQALSTLEAAKWSVV---------GAFGDLP-VGHPLSK-FKTAFEYD 709
Query: 707 QKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTS-----LHFHAWLRGLKTGMYYLRSR 761
Q L++M DR ++D SQS+++ + +P GKL + L HA+ RGLKTGMYY + +
Sbjct: 710 QTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIK 769
Query: 762 AAAD 765
A +
Sbjct: 770 KATN 773
>sp|P74240|RIR1_SYNY3 Ribonucleoside-diphosphate reductase subunit alpha OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=nrdA PE=3 SV=1
Length = 767
Score = 279 bits (714), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 205/668 (30%), Positives = 323/668 (48%), Gaps = 69/668 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
+ V++RDG ++ KI A + GL + + + + + T + +G++T ++ +
Sbjct: 31 IQVIRRDGSSTPLNIGKIRAVVDWACLGLEV---NSIALEAGLTTRLREGISTREIQDNL 87
Query: 61 AETAAAMTT-NHPDYASLAARIVVSNLHKNT--KKSFSETIKDMYNHYNERSGLKAPLIA 117
A M + N PD+ +A R+ V +L K+T ++ + Y Y K +
Sbjct: 88 ISCALEMCSPNEPDWRYVAGRLHVWSLWKDTLVRRGYQ------YGQYLRTVQTK---VT 138
Query: 118 DDVYD--IIMKNAARLDSE---IIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLM 172
+ YD I+ + L I D D DYDY G L YLL + L+
Sbjct: 139 NGEYDSRILTYSEGELQEAGCWINSDWDTDYDYAGAVLLTSRYLLPNELPQEALLTCALL 198
Query: 173 RVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIY 232
+V + A + Y ++ R + A+P L N P L+SCF+V M+D+ +E I+
Sbjct: 199 LASVEAPDRRLQWARRFYESIAARRISLATPILANLRVPGGSLTSCFIVAMEDN-LESIF 257
Query: 233 DTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGK 292
+ A ISK+ GG+GV+V IRATGS++ G S G++P ++ NDTA V+Q GG+
Sbjct: 258 GEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVNQ-GGR 316
Query: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFC 352
R GA V L+ WH D+ EFL+++ +G + +A D+F L +PD FM RV + W+L
Sbjct: 317 RAGAVTVGLDVWHLDVPEFLEMQAENGDQRRKAYDIFPQLILPDEFMRRVINKEDWTLVD 376
Query: 353 PNE-----APGLADCWGTEFERLYTKYEKEGKAK----KVVQAQNLWFEILKSQIETGTP 403
P E LA+ WG +FE Y + E K + A+ L+ +I+++Q+ETG P
Sbjct: 377 PYEVREKMGIELAELWGEQFEGAYREIESNLDTTITLYKRINARELFKQIMRTQVETGMP 436
Query: 404 YMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETA-VCNLASIALPRYVREMGVPM 462
Y+ FKDT NK + ++LG I +NLC E +P + A CNL S+ L
Sbjct: 437 YLSFKDTINKANPNKHLGYIPGTNLCCESFSNVTPGQDAHCCNLVSLNLAN--------- 487
Query: 463 ESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGI 522
D + +A V+ I L+ I++ P A+ N ++R IG+
Sbjct: 488 -----------------LDLQDIAGVSQIAVRMLDNTIELTAPPFADAKSHNNKYRTIGV 530
Query: 523 GVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSK 582
G GLAD + +D E +N+ +FE I Y ++S E+A G Y + GS K
Sbjct: 531 GAMGLADWLAKRRLNYD--ELADINR-LFEEIGYWCTQSSMELAKERGAYPAFPGSDWQK 587
Query: 583 GIL---QPDMW-GVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEP 638
G+L +P W N + W L + I +G+RNS + A P S+S + G P
Sbjct: 588 GLLIGSKPVSWFQANAAKPERWEKLSNDIQTHGIRNSHITAIAPNTSSSLVQGCTASILP 647
Query: 639 YTSNIYSR 646
+YSR
Sbjct: 648 ----VYSR 651
>sp|P28846|RIR1_EHV1B Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 1 (strain Ab4p) GN=21 PE=3 SV=1
Length = 790
Score = 278 bits (712), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 204/665 (30%), Positives = 328/665 (49%), Gaps = 82/665 (12%)
Query: 152 ERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMS---------QRWFTH-- 200
E YL K++G +E +R+A ++ ++S + +FT
Sbjct: 141 EEMYLAKMRGGRIESMGQFFLRLATTATHYTMEEPAMARVLVSGEVGWTYIFKAYFTALA 200
Query: 201 ------ASPTLFNAGTPRAQLSSCFLVCMK-DDSIEGIYDTLKECAIISKSAGGIGVSVH 253
A+P + G L+SC+L+ + D + ++E I + GGIG+S+
Sbjct: 201 GQVLIPATPIMLFGGRDCGSLASCYLLNPRVTDMNSAMLALMEEAGPILCNRGGIGLSLQ 260
Query: 254 NIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLD 313
G S G++ +L++ + ++ G +R VY EPWHADI L+
Sbjct: 261 RFNTPPK-----EGCSRGVMALLKLIDSMTMAINSDG-ERPTGVCVYFEPWHADIRAILN 314
Query: 314 LRKNHGKEEH-RARDLFYALWVPDLFMERVQ------SNGLWSLFCPNEAPGLADCWGTE 366
+R ++E R ++F +W PDLF +R Q S +W+LF + A L +G E
Sbjct: 315 MRGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESGVMWTLF-DDTASHLCHMYGKE 373
Query: 367 FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKS--NQQNLGTIK 424
FE Y + E+ G + Q++ F I++S + TG+P+++FKD CNK + + G I
Sbjct: 374 FEEEYERLEQCGFGVDSIPIQDMAFIIVRSAVMTGSPFLMFKDACNKHYHFDLRRKGAIM 433
Query: 425 SSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEK 484
SNLCTE+IQ+ T+ VCNLASI LP+ + +P P G YFDF
Sbjct: 434 GSNLCTEIIQHADETQNGVCNLASINLPKC---LAIP----PPHTAGVP-----YFDFAA 481
Query: 485 LAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQ 544
L T +N ++ YP ++R +R +G+G+QGL F++L + S EA+
Sbjct: 482 LGRAAATATIFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLDLDMASPEAR 541
Query: 545 QLNKDIFETIYYHALRTSSEIAAREG--PYETYHGSPVSKGILQPDMW-GVNPSDRWDWG 601
QLNK I E + ++++ S+ + R G P++ + S S G L D + GV ++R W
Sbjct: 542 QLNKQIAERLLLNSMKASATL-CRLGMKPFKGFEDSKYSLGELPFDSYPGVTLANRNAWR 600
Query: 602 GLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLL 661
LR I ++G+ NS VA MPT S+SQ+ ++E F P +N++S+ +GE + N L+
Sbjct: 601 RLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATGEVLRPNLLLM 660
Query: 662 HDL----------------TEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEI 705
+ EM WS + G+ +P + L +KT +E
Sbjct: 661 RTIRSIFPRECARLQALSTLEMAQWSVV---------GAFGDLP-VGHPLSK-FKTAFEY 709
Query: 706 KQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKL-----TSLHFHAWLRGLKTGMYYLRS 760
Q+TL+DM DR ++D SQS+++ + +P GKL SL HA+ RGLKTGMYY +
Sbjct: 710 DQRTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYYCKI 769
Query: 761 RAAAD 765
+ A +
Sbjct: 770 KKATN 774
>sp|P08543|RIR1_HHV11 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 1 (strain 17) GN=UL39 PE=3 SV=2
Length = 1137
Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 207/692 (29%), Positives = 332/692 (47%), Gaps = 66/692 (9%)
Query: 117 ADDVYDIIMKNAAR------LDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQ 168
A D YD ++ + L S + Y+ +F FG +E + + ++ G + R
Sbjct: 474 ALDHYDCLIHSTPHTLVERGLQSALKYE-EFYLKRFGGHYMESVFQMYTRIAGFLACRAT 532
Query: 169 HMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSI 228
+ +A+G + +H + ++P + N GT SSC+LV + +
Sbjct: 533 RGMRHIALGREGSWWEMFKFFFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTN 592
Query: 229 EGIYDTLKE--CAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286
+ + AI++++ GGIG+ V +G GT++ ++P L+V +
Sbjct: 593 KATLRAITSNVSAILARN-GGIGLCVQAFNDSGP------GTAS-VMPALKVLDSLVAAH 644
Query: 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKN-HGKEEHRARDLFYALWVPDLFMERV--- 342
++ + GA VYLEPWH D+ L ++ G+E R ++F ALW+PDLF +R+
Sbjct: 645 NKESARPTGA-CVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRH 703
Query: 343 ---QSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIE 399
+ N W+LF + + LAD G EFE+LY E G +++ Q L + I++S
Sbjct: 704 LDGEKNVTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGFGEQI-PIQELAYGIVRSAAT 762
Query: 400 TGTPYMLFKDTCNKKSNQQNLGT-IKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREM 458
TG+P+++FKD N+ G I SNLCTE++ S + VCNL S+ L R V
Sbjct: 763 TGSPFVMFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCV--- 819
Query: 459 GVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHR 518
+ FDF +L + +N +ID P R N R
Sbjct: 820 -----------------SRQTFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLR 862
Query: 519 PIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREG-PYETYHG 577
+GIG+QGL + LG+ +S E Q LNK I E + A++TS+ + R P+ +
Sbjct: 863 SMGIGMQGLHTACLKLGLDLESAEFQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKR 922
Query: 578 SPVSKGILQ----PDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNN 633
S G PD P +W LR + K+G+RNS VA MPTA+++QI +
Sbjct: 923 SMYRAGRFHWERFPD---ARPRYEGEWEMLRQSMMKHGLRNSQFVALMPTAASAQISDVS 979
Query: 634 ECFEPYTSNIYSRRVLSGEFVVVNKHLLHDL--TEMGLWSPIIKNKIIYDDGSV-QKIPQ 690
E F P +N++S+ GE + N LL +L T G + + + SV Q +P
Sbjct: 980 EGFAPLFTNLFSKVTRDGETLRPNTLLLKELERTFSGKRLLEVMDSLDAKQWSVAQALPC 1039
Query: 691 I-PEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTS-----LHF 744
+ P +KT ++ QK L+D+ DR Y+DHSQS+ +++ + G L + L
Sbjct: 1040 LEPTHPLRRFKTAFDYDQKLLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLV 1099
Query: 745 HAWLRGLKTGMYYLRSRAAADAIKFTVDTSVL 776
HA+ RGLKTGMYY + R A ++ F D +++
Sbjct: 1100 HAYKRGLKTGMYYCKVRKATNSGVFGGDDNIV 1131
>sp|P50643|RIR1_SUHVK Ribonucleoside-diphosphate reductase large subunit OS=Suid
herpesvirus 1 (strain Kaplan) GN=RR1 PE=3 SV=1
Length = 835
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 180/602 (29%), Positives = 299/602 (49%), Gaps = 48/602 (7%)
Query: 190 YHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSIEGIYDTLKECAIISKSAGGI 248
+ ++ + A+P + AG R L+SC+L+ + + E + E A I GG+
Sbjct: 250 FRALATQAIVPATPLMLFAGRARGSLASCYLLNPLPRTTEEAVRAITDEVAPILLRRGGV 309
Query: 249 GVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADI 308
G+S+ + T S + GI+ +L+ + ++ +R VY+EPWHAD+
Sbjct: 310 GLSLQSFNRTPS-----GDCTRGIMAVLKALDSMTAAINSDS-ERPTGVCVYVEPWHADV 363
Query: 309 FEFLDLRKNHGKEEH-RARDLFYALWVPDLFMERVQSN------GLWSLFCPNEAPGLAD 361
L++R +E R ++F LW PDLF +R Q + W+LF + A LA
Sbjct: 364 RAVLNMRGMLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERAVKWTLF-DDRASHLAS 422
Query: 362 CWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG 421
G +F R Y + E+ G + + Q++ F I++S + TG+P+++ KD CN+ + G
Sbjct: 423 LHGPDFAREYERLERLGLGVESLPIQDMAFLIVRSAVMTGSPFLMMKDACNRHFHTDTRG 482
Query: 422 T-IKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480
+ +SNLCTE++Q +P E VCNLAS+ LP + L G F
Sbjct: 483 AALATSNLCTEIVQRATPGENGVCNLASVNLP--------------ACLAGG------AF 522
Query: 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDS 540
DF L + +N ++ + YP + R R +GIG+QGL T + L M
Sbjct: 523 DFAALRRAARVAAVFVNAMMRIGNYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMAD 582
Query: 541 TEAQQLNKDIFETIYYHALRTSSEIAARE-GPYETYHGSPVSKGILQPDMW-GVNPSDRW 598
A++LN I E + Y + S E+ R P++ + S ++G++ D + V+ +
Sbjct: 583 PAARRLNAAIAEELLYGVMDASVELCERGLRPFDGFEHSRYARGVMPFDAYERVSLREPM 642
Query: 599 DWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 658
W LR I+++GV N+ VA MPT S+SQ+ ++E F P +N++S+ +SGE + N
Sbjct: 643 RWDALRVRIAEHGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNL 702
Query: 659 HLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELK-----AIYKTVWEIKQKTLVDM 713
L+ L + ++ + + + + EL A +KT +E Q+ L+DM
Sbjct: 703 PLMETLRRLFPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDM 762
Query: 714 AVDRGCYIDHSQSLNIHMDQPNFGKLTS-----LHFHAWLRGLKTGMYYLRSRAAADAIK 768
DR ++DHSQS+++ + +P GKL + L A+ GLKTGMYY + R A +
Sbjct: 763 CADRAPFVDHSQSMSLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGV 822
Query: 769 FT 770
FT
Sbjct: 823 FT 824
>sp|Q77MS1|RIR1_GAHVM Ribonucleoside-diphosphate reductase large subunit OS=Gallid
herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) GN=MDV052
PE=3 SV=1
Length = 822
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 192/619 (31%), Positives = 291/619 (47%), Gaps = 85/619 (13%)
Query: 193 MSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISK------SAG 246
++ + F ++P + G +SC+L+ D DTLK AI + G
Sbjct: 240 LANQLFVPSTPCMLFLGREGTSTASCYLM---DPRTNNTQDTLK--AITEDVVPHLLARG 294
Query: 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHA 306
GIG+S+ ++ G + G++ +++V + + + G VYLEPWHA
Sbjct: 295 GIGISLQHL--NGKF---------GLMHVMKVLDSLVMAANVNESRPTG-ICVYLEPWHA 342
Query: 307 DIFEFLDLRKNHGKEEHRARD-LFYALWVPDLFMERV------QSNGLWSLFCPNEAPGL 359
DI L++R EE R D +F ALW DL +R + N +W+LF + A L
Sbjct: 343 DIMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKNVIWTLF-DSRASIL 401
Query: 360 ADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQN 419
EFE+ Y + E EG + +++ F I+KS TG+P++LFKD CN+
Sbjct: 402 TKLHSEEFEKEYERLESEGLGVASIPIRDMMFAIIKSAASTGSPFILFKDACNRHYITNT 461
Query: 420 LG-TIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNR 478
G I SNLCTE+IQ T VC+LASI L R VR + NR
Sbjct: 462 QGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNI----------------DGNR 505
Query: 479 YFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPF 538
FDF+ L + T +N I++ + P E + R+R +GIGVQG F+ +G+
Sbjct: 506 QFDFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDL 565
Query: 539 DSTEAQQLNKDIFETIYYHALRTSSEIAARE-GPYETYHGSPVSKGILQPDMWG-VNPSD 596
A+ LNK IFE + A+ S E R P+ + S ++G L D W V +
Sbjct: 566 CDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSNSYYARGRLHFDGWANVELAA 625
Query: 597 RWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVV 656
+W LRD I G+ N+ +A MPTA+++Q+ +E F P SN++S+ +GE +
Sbjct: 626 VEEWNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGELLRP 685
Query: 657 NKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQI-----------------PEELKAI- 698
N L+ +L + IY D Q++ I PE +
Sbjct: 686 NIQLMEEL------------RTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLK 733
Query: 699 YKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTS-----LHFHAWLRGLKT 753
YKT ++ Q L+D+ DR ++D SQS+ + + + G L + L HA+ GLKT
Sbjct: 734 YKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKT 793
Query: 754 GMYYLRSRAAADAIKFTVD 772
GMYY + R A +A F D
Sbjct: 794 GMYYCKIRKATNAGVFCGD 812
>sp|P89462|RIR1_HHV2H Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain HG52) GN=UL39 PE=3 SV=1
Length = 1142
Score = 265 bits (678), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 197/676 (29%), Positives = 327/676 (48%), Gaps = 68/676 (10%)
Query: 131 LDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVAVGIHKDDIDSAIK 188
L S + Y+ +F FG +E + + ++ G + R + +A+G +
Sbjct: 499 LQSALKYE-EFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 557
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKE--CAIISKSAG 246
+H + ++P + N GT SSC+LV + + + + AI++++ G
Sbjct: 558 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNVSAILARN-G 616
Query: 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHA 306
GIG+ + ++ + GT++ I+P L+V + ++ + GA VYLEPWH+
Sbjct: 617 GIGLCMQ------AFNDASPGTAS-IMPALKVLDSLVAAHNKQSTRPTGA-CVYLEPWHS 668
Query: 307 DIFEFLDLRKN-HGKEEHRARDLFYALWVPDLFMERV------QSNGLWSLFCPNEAPGL 359
D+ L ++ G+E R ++F ALW+PDLF +R+ + N WSLF + + L
Sbjct: 669 DVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSL 728
Query: 360 ADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQN 419
AD G EFE+LY E G + + Q+L + I++S TG+P+++FKD N+
Sbjct: 729 ADFHGEEFEKLYEHLEAMGFGE-TIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYDT 787
Query: 420 LGT-IKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNR 478
G I SNLCTE++ S + VCNL S+ L R V +
Sbjct: 788 QGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCV--------------------SRQ 827
Query: 479 YFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPF 538
FDF +L + +N +ID P R N R +GIG+QGL + +G+
Sbjct: 828 TFDFGRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDL 887
Query: 539 DSTEAQQLNKDIFETIYYHALRTSSEIAAREG-PYETYHGSPVSKGILQPDMWGVNPSDR 597
+S E + LN I E + A++TS+ + R P+ + S G + + N S R
Sbjct: 888 ESAEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFS-NASPR 946
Query: 598 W--DWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
+ +W LR + K+G+RNS +A MPTA+++QI +E F P +N++S+ GE +
Sbjct: 947 YEGEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLR 1006
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYD--DGSVQKIPQIPEELKAI--------YKTVWEI 705
N LL +L K + D DG K + + L + +KT ++
Sbjct: 1007 PNTLLLKELER------TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDY 1060
Query: 706 KQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTS-----LHFHAWLRGLKTGMYYLRS 760
Q+ L+D+ DR Y+DHSQS+ +++ + G L + L HA+ RGLKTGMYY +
Sbjct: 1061 DQELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKV 1120
Query: 761 RAAADAIKFTVDTSVL 776
R A ++ F D +++
Sbjct: 1121 RKATNSGVFAGDDNIV 1136
>sp|P09853|RIR1_HHV23 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain 333) PE=3 SV=2
Length = 1144
Score = 264 bits (675), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 197/676 (29%), Positives = 327/676 (48%), Gaps = 68/676 (10%)
Query: 131 LDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVAVGIHKDDIDSAIK 188
L S + Y+ +F FG +E + + ++ G + R + +A+G +
Sbjct: 501 LQSALKYE-EFYLKRFGGHYMESVFQMYTRIAGFLACRATRGMRHIALGRQGSWWEMFKF 559
Query: 189 TYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKE--CAIISKSAG 246
+H + ++P + N GT SSC+LV + + + + AI++++ G
Sbjct: 560 FFHRLYDHQIVPSTPAMLNLGTRNYYTSSCYLVNPQATTNQATLRAITGNVSAILARN-G 618
Query: 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHA 306
GIG+ + ++ + GT++ I+P L+V + ++ + GA VYLEPWH+
Sbjct: 619 GIGLCMQ------AFNDASPGTAS-IMPALKVLDSLVAAHNKQSTRPTGA-CVYLEPWHS 670
Query: 307 DIFEFLDLRKN-HGKEEHRARDLFYALWVPDLFMERV------QSNGLWSLFCPNEAPGL 359
D+ L ++ G+E R ++F ALW+PDLF +R+ + N WSLF + + L
Sbjct: 671 DVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKNVTWSLFDRDTSMSL 730
Query: 360 ADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQN 419
AD G EFE+LY E G + + Q+L + I++S TG+P+++FKD N+
Sbjct: 731 ADFHGEEFEKLYEHLEAMGFGE-TIPIQDLAYAIVRSAATTGSPFIMFKDAVNRHYIYDT 789
Query: 420 LGT-IKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNR 478
G I SNLCTE++ +S + VCNL S+ L R V R
Sbjct: 790 QGAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCV--------------------SRR 829
Query: 479 YFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPF 538
FDF L + +N +ID P R + R +GIG+QGL + +G+
Sbjct: 830 TFDFGMLRDAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDL 889
Query: 539 DSTEAQQLNKDIFETIYYHALRTSSEIAAREG-PYETYHGSPVSKGILQPDMWGVNPSDR 597
+S E + LN I E + A++TS+ + R P+ + S G + + N S R
Sbjct: 890 ESAEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFS-NASPR 948
Query: 598 WD--WGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655
++ W LR + K+G+RNS +A MPTA+++QI +E F P +N++S+ GE +
Sbjct: 949 YEGEWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLR 1008
Query: 656 VNKHLLHDLTEMGLWSPIIKNKIIYD--DGSVQKIPQIPEELKAI--------YKTVWEI 705
N LL +L K + D DG K + + L + +KT ++
Sbjct: 1009 PNTLLLKELER------TFGGKRLLDAMDGLEAKQWSVAQALPCLDPAHPLRRFKTAFDY 1062
Query: 706 KQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTS-----LHFHAWLRGLKTGMYYLRS 760
Q+ L+D+ DR Y+DHSQS+ +++ + G L + L HA+ RGLKTGMYY +
Sbjct: 1063 DQELLIDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKV 1122
Query: 761 RAAADAIKFTVDTSVL 776
R A ++ F D +++
Sbjct: 1123 RKATNSGVFAGDDNIV 1138
>sp|Q6UDJ2|RIR1_PSHV1 Ribonucleoside-diphosphate reductase large subunit OS=Psittacid
herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997)
GN=UL39 PE=3 SV=1
Length = 811
Score = 262 bits (670), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 189/669 (28%), Positives = 306/669 (45%), Gaps = 58/669 (8%)
Query: 149 KTLERSYLLKVQGKVVERPQHMLMRVAV-------------------GIHKDDIDSAIKT 189
+ E YL K++ +E +R+A G D ++
Sbjct: 158 RKFESMYLGKLKNGRLESVGQFFLRIAAEAARGVANNDAFAAAVFRDGTRAPDANTVFCL 217
Query: 190 YHM-MSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI-ISKSAGG 247
+ M + ++ +P + AGT +SCFL+ ++ + ++ E I + S GG
Sbjct: 218 FFMALCRQEIVPPTPVMLFAGTESRSYASCFLLDVRGRHTRDVLTSIAEEIIPVMHSHGG 277
Query: 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307
IG+ + + S+G++ L+ D+ R VY+EPWH D
Sbjct: 278 IGLYM-------DCDSNWDDNSSGMMLALKAL-DSIIAASNAVSARPSGLCVYVEPWHRD 329
Query: 308 IFEFLDLRKN-HGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTE 366
I + L R G EE R + F+ALW+PDLFM+R ++NG W+LF A L+D +G E
Sbjct: 330 IMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLF-DGRAAHLSDLYGEE 388
Query: 367 FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG-TIKS 425
FE+ Y E++ A+++ F ++KS + TGTP+++FK N+ G +K
Sbjct: 389 FEKEYELLERKNVGIATYPARDVMFALIKSAVSTGTPFVMFKHAVNRNYFFDMAGRAMKC 448
Query: 426 SNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKL 485
SNLCTE++ T VCNL S+ L +V + P +G+ FD+
Sbjct: 449 SNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPGTPP---IGT-------FDYSSF 498
Query: 486 AEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQ 545
+ + T +N ++ ++ P++ A N R R IGIGVQG +L G DS EA +
Sbjct: 499 RDACAVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLLQGFGLDSVEACR 558
Query: 546 LNKDIFETIYYHALRTSSEIAAR-EGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLR 604
N +FE + +TS I P+ + S +KG L D W W LR
Sbjct: 559 FNGKLFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPARHLYFDGWDRLR 618
Query: 605 DMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDL 664
+ I G+ N LVA MPTAS+SQ+ +E P NI+S+ +GE + +N L+ +
Sbjct: 619 ENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIFSKITTTGEDIQLNVALMETI 678
Query: 665 TEM--------GLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVD 716
+ + + KNK +P K + T +E Q+ L+ ++ D
Sbjct: 679 ECLYPNKAERRDILERLHKNKWSTRGAFGAALPSQHPLTK--FDTAFEADQEHLLRLSAD 736
Query: 717 RGCYIDHSQSLNIHMDQPNFG-----KLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTV 771
R ++DHSQS +++ + + G ++ L A+ GLKTGMYY + R A D F
Sbjct: 737 RAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMYYCKVRKATDNGVFLG 796
Query: 772 DTSVLKENP 780
+ +++P
Sbjct: 797 TDTCRRDDP 805
>sp|P37426|RIR1_SALTY Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=nrdA PE=3 SV=1
Length = 761
Score = 246 bits (629), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 221/806 (27%), Positives = 350/806 (43%), Gaps = 112/806 (13%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
+ V KRDG+ E ++ DKI L + GL+ V + + Y G+ TS + E
Sbjct: 5 LLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAMTT-NHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADD 119
+ AA + + + PDY LAAR+ + +L K F +Y+H + L D+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPA--LYHHVVKMVELGK---YDN 117
Query: 120 --VYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRVA 175
+ D + ++DS I++DRD + Y K LE YL+ +V G++ E Q + + VA
Sbjct: 118 HLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVA 177
Query: 176 VGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSIE 229
+ + +D + Y +S + +P + TP Q SSC L+ C DS++
Sbjct: 178 ACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSLD 235
Query: 230 GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQG 289
I T GIG++ IRA GS IRG G +P + F + QG
Sbjct: 236 SINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQG 295
Query: 290 GGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWS 349
G R GA ++ WH ++ L L+ N G E +R R + Y + + L R+ G +
Sbjct: 296 G-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDIT 354
Query: 350 LFCPNEAPGLADCWGT---EFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPYM 405
LF P++ PGL D + EFERLY KYE + +K V+A L+ +++ + TG Y+
Sbjct: 355 LFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRKQRVKAVELFSLMMQERASTGRIYI 414
Query: 406 LFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYVR 456
D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 415 QNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL----- 469
Query: 457 EMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLR 516
G+ + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 --------------GAIKT------LDELEELAILAVRALDALLDYQDYPIPAAKRGAMG 509
Query: 517 HRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYH 576
R +GIGV A G + A L FE I Y+ L+ S+E+A +G ++
Sbjct: 510 RRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFN 569
Query: 577 GSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQIL 630
+ +KGIL D + VN +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 570 ETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSETSSQIS 629
Query: 631 GNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQK 687
EP Y S S+ DG +++
Sbjct: 630 NATNGIEPPRGYVSIKASK-----------------------------------DGILRQ 654
Query: 688 IPQIPEELKAIYKTVWEIKQKT-LVDMAVDRGCYIDHSQSLNIHMDQPNF--GKLTSLH- 743
+ E LK Y+ +WE+ + + +ID S S N + D F GK+
Sbjct: 655 VVPDYEHLKDAYELLWEMPNNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQL 714
Query: 744 ----FHAWLRGLKTGMYYLRSRAAAD 765
A+ G+KT +YY +R A+
Sbjct: 715 LKDLLTAYKFGVKT-LYYQNTRDGAE 739
>sp|P00452|RIR1_ECOLI Ribonucleoside-diphosphate reductase 1 subunit alpha OS=Escherichia
coli (strain K12) GN=nrdA PE=1 SV=2
Length = 761
Score = 245 bits (625), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 203/704 (28%), Positives = 315/704 (44%), Gaps = 72/704 (10%)
Query: 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60
+ V KRDG E ++ DKI L + GL V + + Y G+ TS + E
Sbjct: 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHI--QFYDGIKTSDIHETI 62
Query: 61 AETAAAMTT-NHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNH---YNERSGLKAPLI 116
+ AA + + + PDY LAAR+ + +L K F +Y+H E L+
Sbjct: 63 IKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPA--LYDHVVKMVEMGKYDNHLL 120
Query: 117 ADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLL--KVQGKVVERPQHMLMRV 174
D + ++D+ I +DRD + Y K LE YL+ +V G++ E Q + + V
Sbjct: 121 ED----YTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILV 176
Query: 175 AVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLV-CMKDDSI 228
A + + + + Y +S + +P + TP Q SSC L+ C DS+
Sbjct: 177 AACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC--GDSL 234
Query: 229 EGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288
+ I T GIG++ IRA GS IRG G +P + F + Q
Sbjct: 235 DSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQ 294
Query: 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348
GG R GA ++ WH ++ L L+ N G E +R R + Y + + L R+
Sbjct: 295 GG-VRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDI 353
Query: 349 SLFCPNEAPGLADCW---GTEFERLYTKYEKEGKAKKV-VQAQNLWFEILKSQIETGTPY 404
+LF P++ PGL D + EFERLYTKYEK+ +K V+A L+ +++ + TG Y
Sbjct: 354 TLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIY 413
Query: 405 MLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPT--------ETAVCNLASIALPRYV 455
+ D CN S + ++ SNLC E+ T P E A+C L++ L
Sbjct: 414 IQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL---- 469
Query: 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNL 515
G+ N + ++L E+ + L+ ++D YP+ A+R +
Sbjct: 470 ------------------GAIN---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508
Query: 516 RHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575
R +GIGV A G + A L FE I Y+ L+ S+E+A +G +
Sbjct: 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWF 568
Query: 576 HGSPVSKGILQPDMWG------VNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQI 629
+ + +KGIL D + N +DW LR+ I +G+RNS L A MP+ ++SQI
Sbjct: 569 NETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQI 628
Query: 630 LGNNECFEP---YTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW 670
EP Y S S+ + + V +H LHD E+ LW
Sbjct: 629 SNATNGIEPPRGYVSIKASKDGILRQVVPDYEH-LHDAYEL-LW 670
>sp|Q4JQV6|RIR1_VZVO Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF19
PE=3 SV=1
Length = 775
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 177/603 (29%), Positives = 282/603 (46%), Gaps = 72/603 (11%)
Query: 201 ASPTLFNAGTPRAQLSSCFLVCMKDDSI---EGIYDTLKECAIISKSAGGIGVSVHNIRA 257
A+P + G +SC+L M +SI + + + +S GG+G+S+ ++
Sbjct: 199 ATPVMMFLGRETGATASCYL--MDPESITVGRAVRAITGDVGTVLQSRGGVGISLQSLN- 255
Query: 258 TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKN 317
+ T + G++ +L++ + ++ +R VY+EPWH D+ L R
Sbjct: 256 ----LIPTENQTKGLLAVLKLLDCMVMAINSDC-ERPTGVCVYIEPWHVDLQTVLATRGM 310
Query: 318 HGKEE-HRARDLFYALWVPDLFMERV------QSNGLWSLFCPNEAPGLADCWGTEFERL 370
++E R ++F LW PDLF ER SN W+LF N A L G F
Sbjct: 311 LVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLF-DNRADILRTLHGEAFTST 369
Query: 371 YTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG-TIKSSNLC 429
Y + E+EG V Q++ F I++S TG+P+++FKD CN+ + G I SNLC
Sbjct: 370 YLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQGNAITGSNLC 429
Query: 430 TEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVT 489
TE++Q + VCNLASI L + + V + D + A T
Sbjct: 430 TEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLN---------------DLQLTARTT 474
Query: 490 GIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKD 549
I LN ++ +P + + + +R +GIG+QGL T + LG S A++LN
Sbjct: 475 VIF---LNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQ 531
Query: 550 IFETIYYHALRTSSEIAAREG--PYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMI 607
I E + Y ++TS E+ G P++ + S +KG L D + W LRD I
Sbjct: 532 IAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTISYLDLPWCTLRDDI 591
Query: 608 SKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667
G+ NS +A MPT S++Q+ +E F P +N++S+ SGE + N L+ +L +M
Sbjct: 592 CAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELRDM 651
Query: 668 ----------------GLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLV 711
WS I + + + K YKT +E +Q+ LV
Sbjct: 652 YSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLK-----------YKTAFEYEQEDLV 700
Query: 712 DMAVDRGCYIDHSQSLNIHMDQPNFG-----KLTSLHFHAWLRGLKTGMYYLRSRAAADA 766
DM +R +ID SQS+ + +++ G K+ +L A+ GLKTGMYY + R A ++
Sbjct: 701 DMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNS 760
Query: 767 IKF 769
F
Sbjct: 761 GLF 763
>sp|P09248|RIR1_VZVD Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Dumas) GN=ORF19 PE=3
SV=1
Length = 775
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 177/603 (29%), Positives = 282/603 (46%), Gaps = 72/603 (11%)
Query: 201 ASPTLFNAGTPRAQLSSCFLVCMKDDSI---EGIYDTLKECAIISKSAGGIGVSVHNIRA 257
A+P + G +SC+L M +SI + + + +S GG+G+S+ ++
Sbjct: 199 ATPVMMFLGRETGATASCYL--MDPESITVGRAVRAITGDVGTVLQSRGGVGISLQSLN- 255
Query: 258 TGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKN 317
+ T + G++ +L++ + ++ +R VY+EPWH D+ L R
Sbjct: 256 ----LIPTENQTKGLLAVLKLLDCMVMAINSDC-ERPTGVCVYIEPWHVDLQTVLATRGM 310
Query: 318 HGKEE-HRARDLFYALWVPDLFMERV------QSNGLWSLFCPNEAPGLADCWGTEFERL 370
++E R ++F LW PDLF ER SN W+LF N A L G F
Sbjct: 311 LVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASNVQWTLF-DNRADILRTLHGEAFTST 369
Query: 371 YTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLG-TIKSSNLC 429
Y + E+EG V Q++ F I++S TG+P+++FKD CN+ + G I SNLC
Sbjct: 370 YLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFLMFKDACNRNYHMNTQGNAITGSNLC 429
Query: 430 TEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVT 489
TE++Q + VCNLASI L + + V + D + A T
Sbjct: 430 TEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNLN---------------DLQLTARTT 474
Query: 490 GIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKD 549
I LN ++ +P + + + +R +GIG+QGL T + LG S A++LN
Sbjct: 475 VIF---LNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQ 531
Query: 550 IFETIYYHALRTSSEIAAREG--PYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMI 607
I E + Y ++TS E+ G P++ + S +KG L D + W LRD I
Sbjct: 532 IAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTISYLDLPWCTLRDDI 591
Query: 608 SKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667
G+ NS +A MPT S++Q+ +E F P +N++S+ SGE + N L+ +L +M
Sbjct: 592 CAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDLMDELRDM 651
Query: 668 ----------------GLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLV 711
WS I + + + K YKT +E +Q+ LV
Sbjct: 652 YSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLK-----------YKTAFEYEQEDLV 700
Query: 712 DMAVDRGCYIDHSQSLNIHMDQPNFG-----KLTSLHFHAWLRGLKTGMYYLRSRAAADA 766
DM +R +ID SQS+ + +++ G K+ +L A+ GLKTGMYY + R A ++
Sbjct: 701 DMCAERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNS 760
Query: 767 IKF 769
F
Sbjct: 761 GLF 763
>sp|Q01037|RIR1_SHV21 Ribonucleoside-diphosphate reductase large subunit OS=Saimiriine
herpesvirus 2 (strain 11) GN=61 PE=3 SV=1
Length = 767
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 224/781 (28%), Positives = 341/781 (43%), Gaps = 106/781 (13%)
Query: 86 LHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDY 145
HK S +ETI ++ L PL+ + + I +D E+ + YD+
Sbjct: 32 FHKLMDMSSTETI-------SQYMSLFGPLLEPHILEFIQNYEQEID-EVCLEYRASYDF 83
Query: 146 FGF--------KTLERSYLL----KVQGKVVERPQHMLMRVA-----------------V 176
K +Y+L ++ GK P H R+A V
Sbjct: 84 MCLRNCGILPAKRFYDTYVLPPRTEMNGKYESIP-HFFARIAAYCAWNCIMCEPLKDTLV 142
Query: 177 GIHKDDIDSAIKT--------YHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSI 228
+ K D + IKT Y ++S + A+P + +AG LSSCF++ D+
Sbjct: 143 YVQKRDWNVEIKTDMQIFKYFYKVISSQLVCCATPVMRSAGVAGENLSSCFIIAPTLDTE 202
Query: 229 EG-IYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287
+ I E A + S G+GV V G I N V FND +
Sbjct: 203 KSTISSIFGELAPLLASRSGVGVDVTKFSFGGKNIHSCLKLINAQV---EFFNDKSV--- 256
Query: 288 QGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQS--N 345
R + A Y+E WH I EFL + + R +F + VP LF + +S N
Sbjct: 257 -----RPVSVATYIEVWHCQIHEFLSAKLPENPD--RCNSIFQGVCVPSLFFKMYESDPN 309
Query: 346 GLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYM 405
GLW LF P +AP L +G EFE Y + E K K+ V ++L F ++ + I+TG+PY+
Sbjct: 310 GLWYLFDPQDAPNLTRLYGLEFEEEYLRLVSEKKYKQSVTLKSLMFSLINTIIKTGSPYV 369
Query: 406 LFKDTCNKKSNQQNLG-TIKSSNLCTEVIQYTSPTE-TAVCNLASIALPRYVREMGVPME 463
+ K+ NK + G I SNLC E++Q P + T+ CNLA++ LP+ + P
Sbjct: 370 ISKEAMNKHHWYETQGEAINCSNLCAEIVQ--QPKQFTSTCNLANVCLPKCLNSSNFPYT 427
Query: 464 SHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIG 523
S FDF KL +N I ++ P +A R R +GIG
Sbjct: 428 C----------SNTAQFDFSKLEYAVQAAVFIINACI-LSPSPTSSATVGQ-RERSMGIG 475
Query: 524 VQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAA--REGPYETYHGSPVS 581
GLAD F +G + E++ L++DIFET+YY A++TSSEI + + P+ + S ++
Sbjct: 476 CHGLADVFSEMGYGYLDLESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRKSKLA 535
Query: 582 KGILQPDMWGVNPS--DRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPY 639
G+ W P W L+D I K GV NS +A MPTA TSQ+ G + F PY
Sbjct: 536 HGVFHWATWDAMPQRVPMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPY 595
Query: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIY 699
+N+ S+ E + N L ++ L + + + G V +PE++ Y
Sbjct: 596 FANMSSKVSNKEEIMKPNITFLKNVKPQDLCT------VRFYGGDVS---MMPEDVSTRY 646
Query: 700 K---TVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGK---LTSLHFHAWLRGLKT 753
K T ++ + + A R Y+D SQSL + + + N L L + GLKT
Sbjct: 647 KHFLTAFDYCPEAQMRRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRLGLKT 706
Query: 754 GMYYLRSRAAADAIK---FTVDTSVLKENPKVTDD-----DDAKMAQMVCSLTNREECMA 805
MYY R + ++ +D K+ V D D+ + C L ++ EC+A
Sbjct: 707 IMYYCRVKKTTKLLQLECLKLDEHTKKDAQIVLADLARELPDSHKTEDACPL-DQSECIA 765
Query: 806 C 806
C
Sbjct: 766 C 766
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,087,556
Number of Sequences: 539616
Number of extensions: 13068095
Number of successful extensions: 30952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 30329
Number of HSP's gapped (non-prelim): 151
length of query: 808
length of database: 191,569,459
effective HSP length: 126
effective length of query: 682
effective length of database: 123,577,843
effective search space: 84280088926
effective search space used: 84280088926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)