Query 003602
Match_columns 808
No_of_seqs 280 out of 1646
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1112 Ribonucleotide reducta 100.0 3E-247 6E-252 1955.5 54.2 789 1-808 1-796 (796)
2 PLN02437 ribonucleoside--dipho 100.0 2E-210 4E-215 1851.7 77.4 808 1-808 1-813 (813)
3 PRK06539 ribonucleotide-diphos 100.0 2E-200 4E-205 1765.5 72.8 778 1-807 3-822 (822)
4 PRK07207 ribonucleotide-diphos 100.0 6E-201 1E-205 1795.5 69.1 779 1-807 149-965 (965)
5 PRK12365 ribonucleotide-diphos 100.0 2E-198 5E-203 1789.9 71.4 775 1-807 236-1046(1046)
6 PRK08447 ribonucleotide-diphos 100.0 4E-187 9E-192 1639.8 65.5 697 1-766 2-774 (789)
7 PHA02572 nrdA ribonucleoside-d 100.0 8E-185 2E-189 1621.6 64.8 702 1-773 4-742 (753)
8 PRK07088 ribonucleotide-diphos 100.0 3E-184 6E-189 1616.5 64.6 693 1-763 3-754 (764)
9 PRK09103 ribonucleotide-diphos 100.0 9E-184 2E-188 1611.2 62.9 708 1-774 2-745 (758)
10 PRK09209 ribonucleotide-diphos 100.0 2E-183 4E-188 1611.6 63.6 695 2-763 11-751 (761)
11 PRK12364 ribonucleotide-diphos 100.0 3E-178 6E-183 1588.4 64.2 665 34-763 126-832 (842)
12 PRK07187 ribonucleotide-diphos 100.0 2E-160 4E-165 1406.3 55.2 624 71-764 25-698 (721)
13 PRK07632 ribonucleotide-diphos 100.0 2E-159 4E-164 1394.5 51.4 575 127-764 72-690 (699)
14 TIGR02506 NrdE_NrdA ribonucleo 100.0 1E-154 2E-159 1356.6 55.7 595 145-761 1-617 (617)
15 PRK08188 ribonucleotide-diphos 100.0 1E-154 3E-159 1353.9 53.9 587 114-765 70-701 (714)
16 PRK07306 ribonucleotide-diphos 100.0 1E-153 2E-158 1351.4 52.6 585 114-764 64-706 (720)
17 PRK06406 ribonucleotide-diphos 100.0 3E-152 7E-157 1342.9 63.3 650 2-766 6-724 (771)
18 PRK09102 ribonucleotide-diphos 100.0 2E-146 4E-151 1271.7 52.8 552 131-770 9-576 (601)
19 PRK08115 ribonucleotide-diphos 100.0 3E-143 6E-148 1259.4 51.7 566 162-769 125-779 (858)
20 PRK08665 ribonucleotide-diphos 100.0 2E-142 3E-147 1267.3 55.3 552 137-765 6-569 (752)
21 TIGR02504 NrdJ_Z ribonucleosid 100.0 5E-141 1E-145 1235.9 53.6 566 150-760 1-578 (586)
22 PRK06948 ribonucleotide reduct 100.0 1E-137 3E-142 1199.4 51.8 565 137-764 6-585 (595)
23 TIGR02510 NrdE-prime ribonucle 100.0 1E-137 2E-142 1192.9 47.0 525 137-766 12-557 (571)
24 PF02867 Ribonuc_red_lgC: Ribo 100.0 1E-136 3E-141 1190.2 43.1 525 215-758 1-538 (538)
25 PRK06556 vitamin B12-dependent 100.0 1E-134 2E-139 1206.5 52.8 580 143-769 62-701 (953)
26 cd01679 RNR_I Class I ribonucl 100.0 3E-128 6E-133 1094.3 43.9 454 167-760 1-460 (460)
27 cd02888 RNR_II_dimer Class II 100.0 1E-127 3E-132 1090.8 44.1 459 187-758 2-462 (464)
28 COG0209 NrdA Ribonucleotide re 100.0 1E-125 2E-130 1117.5 53.7 623 42-771 4-645 (651)
29 PRK08332 ribonucleotide-diphos 100.0 2E-124 3E-129 1156.7 62.3 481 237-759 747-1609(1740)
30 PRK07562 ribonucleotide-diphos 100.0 9E-123 2E-127 1104.3 53.2 557 166-768 105-924 (1220)
31 cd01676 RNR_II_monomer Class I 100.0 2E-83 4.2E-88 748.7 37.0 492 150-775 4-622 (658)
32 TIGR02505 RTPR ribonucleoside- 100.0 3.5E-70 7.7E-75 638.1 28.6 481 143-750 8-640 (713)
33 cd00576 RNR_PFL Ribonucleotide 100.0 7E-49 1.5E-53 441.9 24.1 372 186-757 1-400 (401)
34 PF00317 Ribonuc_red_lgN: Ribo 99.7 1.1E-18 2.5E-23 154.0 5.8 72 142-213 2-83 (83)
35 PF03477 ATP-cone: ATP cone do 99.3 5.1E-12 1.1E-16 113.1 9.1 85 1-89 1-90 (90)
36 PRK08270 anaerobic ribonucleos 99.2 5E-08 1.1E-12 116.3 34.8 243 390-748 345-613 (656)
37 PRK09263 anaerobic ribonucleos 99.2 1.6E-07 3.4E-12 113.0 38.4 257 386-757 347-635 (711)
38 PRK07111 anaerobic ribonucleos 99.0 2.8E-07 6.2E-12 111.2 33.7 260 385-752 378-672 (735)
39 TIGR02487 NrdD anaerobic ribon 97.8 0.0014 3E-08 78.0 21.7 250 388-750 233-514 (579)
40 PRK00464 nrdR transcriptional 97.8 2.3E-05 5E-10 77.1 4.6 77 1-79 49-129 (154)
41 PRK14704 anaerobic ribonucleos 97.7 0.0037 8E-08 74.6 21.7 259 385-752 259-551 (618)
42 cd01675 RNR_III Class III ribo 97.5 0.006 1.3E-07 72.4 19.8 253 385-752 227-510 (555)
43 PRK10977 hypothetical protein; 97.4 0.0095 2.1E-07 69.6 20.2 255 385-775 190-466 (509)
44 PF13597 NRDD: Anaerobic ribon 97.4 0.0021 4.6E-08 75.9 14.0 241 385-748 224-478 (546)
45 PRK08271 anaerobic ribonucleos 97.3 0.0098 2.1E-07 71.0 18.1 106 440-562 347-460 (623)
46 TIGR00244 transcriptional regu 97.2 0.00065 1.4E-08 65.7 6.3 75 2-78 50-128 (147)
47 COG1327 Predicted transcriptio 96.9 0.0032 7E-08 60.9 8.1 75 2-78 50-128 (156)
48 PRK08579 anaerobic ribonucleos 96.6 0.14 3.1E-06 61.4 20.8 202 443-749 335-557 (625)
49 PRK07207 ribonucleotide-diphos 95.4 0.036 7.8E-07 69.5 8.0 64 1-64 34-111 (965)
50 TIGR02827 RNR_anaer_Bdell anae 94.8 0.41 9E-06 57.0 14.3 108 439-571 319-431 (586)
51 PRK12365 ribonucleotide-diphos 93.9 0.16 3.5E-06 64.5 8.9 64 1-64 9-88 (1046)
52 PF11230 DUF3029: Protein of u 88.0 17 0.00036 41.8 15.8 263 382-777 173-456 (487)
53 COG1328 NrdD Oxygen-sensitive 69.7 10 0.00023 46.2 7.0 150 392-560 348-526 (700)
54 PF04282 DUF438: Family of unk 56.1 24 0.00052 30.5 4.9 42 14-60 14-55 (71)
55 PF03847 TFIID_20kDa: Transcri 40.3 62 0.0014 27.7 5.0 32 540-571 19-50 (68)
56 COG1328 NrdD Oxygen-sensitive 40.1 96 0.0021 38.2 8.4 60 2-64 4-70 (700)
57 PRK15329 chaperone protein Sic 34.7 43 0.00093 32.6 3.5 29 383-411 57-88 (138)
58 cd07981 TAF12 TATA Binding Pro 32.5 95 0.0021 26.7 5.0 33 539-571 20-52 (72)
59 COG2099 CobK Precorrin-6x redu 27.8 54 0.0012 35.2 3.2 81 522-618 53-134 (257)
60 PF14698 ASL_C2: Argininosucci 20.7 1.4E+02 0.003 25.6 3.8 15 524-538 4-18 (70)
No 1
>KOG1112 consensus Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-247 Score=1955.47 Aligned_cols=789 Identities=74% Similarity=1.227 Sum_probs=772.1
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~r 80 (808)
|+|+|||||.|++.+|||+.+|+++|+||++++|||.+|+++|++++|+||||.|++++++||||+|++.||||..||||
T Consensus 1 myv~krdgr~E~v~fDkItsRi~~l~ygL~~d~vD~v~vt~kvisG~y~gvTt~eldnlaaEtaA~mtt~HPdYa~laaR 80 (796)
T KOG1112|consen 1 MYVVKRDGRQEKVHFDKITSRIQKLSYGLDMDHVDPVEVTQKVISGVYEGVTTVELDNLAAETAASMTTKHPDYAILAAR 80 (796)
T ss_pred CcccccccccccccHhHHHHHHHHHhcCCCccccCHHHHHHHHHhhhcCCchhHhHHHHHHHHHHHhhcCCccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcchhHHHHHHHhHHHHhhhhcccccCCCChhhHHHHHHhhccccC
Q 003602 81 IVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (808)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk~~ 160 (808)
|.+++|||++.+.|+++++++++|+++++|..++++++++|+++++|.++|++.|.|+|||.|+|||+++|+++||||.+
T Consensus 81 IavSnlHk~T~k~Fs~vi~~l~~~vn~~tgk~apmisd~~y~Iv~~n~d~lnsaIiYdrDf~y~yFGfkTLerSYLlkin 160 (796)
T KOG1112|consen 81 IAVSNLHKQTKKVFSEVIEDLHNHVNPHTGKHAPMISDEVYNIVMENKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN 160 (796)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcCCcccHHHHHHHHhhhhhhccceeeccccceeecchhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHHHHHHHHHHH
Q 003602 161 GKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240 (808)
Q Consensus 161 g~~~E~pq~~~~RvA~~l~~~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~ 240 (808)
|++.|+||||+||||.+||++|++.|+++|++||.++|+|||||||||||+++|||||||++|.+||+||||+++++||+
T Consensus 161 g~v~ERPQhm~MRVa~gIH~~Die~aietYnLmS~ryfTHAsPTLfnagt~rPQlsSCFL~tmk~DSIeGiydtlkqcA~ 240 (796)
T KOG1112|consen 161 GEVAERPQHMLMRVALGIHGEDIEAAIETYNLMSERYFTHASPTLFNAGTPRPQLSSCFLLTMKDDSIEGIYDTLKQCAM 240 (796)
T ss_pred CchhcChHhHhHHhhhccchhhHHHHHHHHHHhhhhhhccCCchhhhcCCCCccccceEEEEecccchHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCc
Q 003602 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK 320 (808)
Q Consensus 241 isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~ 320 (808)
|||.+||||+++++||++||.|+|++|+|+|+||++|+||++++||+|||++|+||+++||++||.||++||++|+|+|+
T Consensus 241 IsKsaGGIGl~vh~IRatGs~i~gTnGtSNGliPmirV~NntaRYvdQGg~kRpGafAiyLEPWHadifdFlelrKn~G~ 320 (796)
T KOG1112|consen 241 ISKSAGGIGLNVHNIRATGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFAIYLEPWHADIFDFLELRKNTGK 320 (796)
T ss_pred hhhccCcceEEEeeeeccCcEEecCCCCCCCccchhhhhcchhhHhhcCCCCCCceeEEEechhHHHHHHHHHHHhccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhh
Q 003602 321 EEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400 (808)
Q Consensus 321 e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~et 400 (808)
|+.|+|++|+++||||+||+||++|++|+||||++||||.|+||+||+.+|.+||++|+.+++|+|++||..|+++|.||
T Consensus 321 Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~LY~kYEkegr~~k~vkAqklW~aIleaQ~ET 400 (796)
T KOG1112|consen 321 EEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEALYTKYEKEGRGKKTVKAQKLWYAILEAQVET 400 (796)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHHHHHHHHhccccceeeHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCC
Q 003602 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480 (808)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (808)
|.|||+|||+|||++||+|+|+|+|||||+||++|++|+|++||||+||.|++||.. +..|
T Consensus 401 GtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASiaLp~fv~~-------------------~~~y 461 (796)
T KOG1112|consen 401 GTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIALPMFVTP-------------------EKTY 461 (796)
T ss_pred CCceEEehhhhcccccccccceeeecchhHHHhhccCCcceeeeehHhhhhhhhccc-------------------cccc
Confidence 999999999999999999999999999999999999999999999999999999974 5779
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 003602 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALR 560 (808)
Q Consensus 481 D~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~ 560 (808)
||++|++++++.+|+||+|||+|+||+|+|+++|.||||||||||||||+|+.|++||+|+||+.|+.+|||+|||+|++
T Consensus 462 dF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEtiYy~ale 541 (796)
T KOG1112|consen 462 DFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETIYYAALE 541 (796)
T ss_pred cHHHHHHHHHHHHhhhhheeccCcccchHhhhcccccCCccccchhHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccc
Q 003602 561 TSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (808)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~ 640 (808)
||||||++.|||+.|+|||.|+|+||||+|+++|++.|||+.||++|.+||+|||.|+|+|||+|||||+|++++|||+.
T Consensus 542 AScelA~~eGpyetyeGSPvSkGilq~dmw~~~pt~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQIlGnNE~fEP~t 621 (796)
T KOG1112|consen 542 ASCELAQKEGPYETYEGSPVSKGILQFDMWNVKPTDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQILGNNECFEPYT 621 (796)
T ss_pred HhHHHHHhcCCCcccCCCcccccccchhhcCCCCCcccCHHHHHHHHHHhccccceeeccCCCcchhhhhcCccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCc
Q 003602 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720 (808)
Q Consensus 641 s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~ 720 (808)
+|+|+||+++|||++||+||++||.++|+|+++||+.++..+||||+||.+|+++|++|||+|||+|+.+|+|||+|+.|
T Consensus 622 sNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqktvi~mAAdRg~~ 701 (796)
T KOG1112|consen 622 SNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQKTVIDMAADRGAF 701 (796)
T ss_pred ccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEeeCCCChhHHHHHHHHHHHcCCceEEEEecCccccccccccccccccccCCC---CCCcc----hhhhhcc
Q 003602 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPK---VTDDD----DAKMAQM 793 (808)
Q Consensus 721 vDQs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~ 793 (808)
||||||+||++..|++++|.+||||+||+||||||||||++++++++|||||++.++..+. ...+. ..+...+
T Consensus 702 iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~~~~~~~~~~~~~~e~~~~~~~~~ 781 (796)
T KOG1112|consen 702 IDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLNEKAEVAEGDSKEEEEDEYNTAVM 781 (796)
T ss_pred cccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhcccccccccchhhhHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999987664322 11111 1234568
Q ss_pred ccccCCccccccCCC
Q 003602 794 VCSLTNREECMACGS 808 (808)
Q Consensus 794 ~~~~~~~~~c~~c~~ 808 (808)
+|++++||.|++|||
T Consensus 782 ~c~~~n~e~C~mCss 796 (796)
T KOG1112|consen 782 VCSLDNPEACLMCSS 796 (796)
T ss_pred hhccCCchHhhhcCC
Confidence 899999999999996
No 2
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=100.00 E-value=2e-210 Score=1851.73 Aligned_cols=808 Identities=90% Similarity=1.411 Sum_probs=770.0
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~r 80 (808)
|+|+||||+.|+|+++||+++|.++|.||+.+.+|+..++.++..++++||||+||+++++++|+++++.||||++||||
T Consensus 1 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~t~~el~~~~~~~a~~~~~~~p~y~~~Aar 80 (813)
T PLN02437 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQDHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTTNHPDYAILAAR 80 (813)
T ss_pred CeEEEeCCceeecCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhcccCCcHHHHHHH
Confidence 68999999999999999999999999999877899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcchhHHHHHHHhHHHHhhhhcccccCCCChhhHHHHHHhhccccC
Q 003602 81 IVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (808)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk~~ 160 (808)
|++.+|||++.++|.+.+..+++++...+|...+++++++++++.+|+++|++.|+++||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~rYllk~~ 160 (813)
T PLN02437 81 IAVSNLHKNTKKSFSETVKDMYNHVNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVN 160 (813)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhcCHHHHHHHHHHHHHHHHHhCcccccCCCHHHHHHHHHhheecCC
Confidence 99999999999999998899998877777888999999999999999999999999999999999999999999999977
Q ss_pred CcccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHHHHHHHHHHH
Q 003602 161 GKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240 (808)
Q Consensus 161 g~~~E~pq~~~~RvA~~l~~~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~ 240 (808)
|.++|+||+||||||++++.++++++++||++||+++|+||||||+||||+++|||||||+++.+||++|||++++++|+
T Consensus 161 ~~~~E~pq~~~mRVA~~l~~~~~~~a~~~Y~~ls~~~f~~aTPtL~naGt~~~qlsSCFl~~~~~Dsl~~I~~~~~~~a~ 240 (813)
T PLN02437 161 GKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV 240 (813)
T ss_pred CCcccCHHHHHHHHHHHHcccCHHHHHHHHHHHHcCCcccCCchhhcCCCCCCCcceeeecCCCcchHHHHHHHHHHHHH
Confidence 88899999999999999999899999999999999999999999999999999999999998778999999999999999
Q ss_pred HHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCc
Q 003602 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK 320 (808)
Q Consensus 241 isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~ 320 (808)
++|+|||||+|+|+|||+||+|+|++|+|+|+|||||+||+++++|+|||++||||+|+||++|||||++||++|+++|+
T Consensus 241 isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgGg~RrGA~~vyL~~wH~DI~eFL~lK~~~g~ 320 (813)
T PLN02437 241 ISKSAGGIGLSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGK 320 (813)
T ss_pred HHhcCCeEeecccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHHHcCCCccccceeEEEeCCCccHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999999999999997699999999999999999999999999999
Q ss_pred ccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhh
Q 003602 321 EEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400 (808)
Q Consensus 321 e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~et 400 (808)
++.|++++|+||||||+|||||++|++|+||+|+++|+|.++||++|+++|++||++|+.+++|+||+||++|++++|+|
T Consensus 321 e~~r~~~l~~sv~ipDlFM~rv~~d~~W~Lf~P~e~~~L~~~yG~eF~~~Y~~~e~~g~~~~~V~AreLw~~I~~s~~eT 400 (813)
T PLN02437 321 EEHRARDLFYALWIPDLFMERVQSNGDWSLFCPNEAPGLADCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIET 400 (813)
T ss_pred HhHHHHhcceeEEECHHHHHHHHcCCCEEEECCcccchHHHhhchHHHHHHHHHHhcCceeEEEEHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCC
Q 003602 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480 (808)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (808)
|+|||+|+|+||++||++|+|+|++||||+||+||++|++++||||+||||++||.+.+...+.|...++++....+..|
T Consensus 401 G~P~i~fkD~~N~~~~~~~~G~I~~SNlCtEI~~~~~~~e~avCNL~SINL~~~v~~~~~~~~~~~~~~~~~~~~~~~~f 480 (813)
T PLN02437 401 GTPYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGSLGSKNRYF 480 (813)
T ss_pred CCCeEEEhHHHhhcCCCccCCceEeecccccccccCCccceeeeecchhhHHHHHhcccccccccccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999996533334445556676666666789
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 003602 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALR 560 (808)
Q Consensus 481 D~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~ 560 (808)
||+.|+++|+++||+||+|||.|.||+|+++++|+++|+||||||||||+|+++|++|+|+||++|+++|||+|+|+|++
T Consensus 481 D~~~L~~~v~~avr~LDnvID~n~yP~~~a~~~n~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~I~e~i~~~A~~ 560 (813)
T PLN02437 481 DFEKLAEVTAVVTRNLNKIIDVNYYPVETARRSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALK 560 (813)
T ss_pred CHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHhhcCCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccc
Q 003602 561 TSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (808)
Q Consensus 561 aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~ 640 (808)
||++||+|+|+||.|++|+|++|+|++|.|+..++..+||++||++|++||+|||+++|||||+|||+|+|+|+||||+|
T Consensus 561 aS~eLAke~G~fp~f~~S~~~~G~~~~~~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~ 640 (813)
T PLN02437 561 ASSELAAREGPYETYAGSPVSKGILQPDMWGVTPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (813)
T ss_pred HHHHHHHHhCCCCCCCcCcchhhhccchhccCCCchhhhHHHHHHHHHHhCcchhceeccCCcHHHHHHcCCCCcccccc
Confidence 99999999999999999999999999999998777788999999999999999999999999999999999999999999
Q ss_pred cceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCc
Q 003602 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720 (808)
Q Consensus 641 s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~ 720 (808)
+|+|+|++.+|+|++||++|+++|+++|+|+++++++|+.++|++|++|.+|++++++|+|||||+|+++|+|||+||||
T Consensus 641 sn~y~R~~~~Ge~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~ 720 (813)
T PLN02437 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCY 720 (813)
T ss_pred chheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhhCCCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEeeCCCChhHHHHHHHHHHHcCCceEEEEecCccccccccccccccccccCC-----CCCCcchhhhhcccc
Q 003602 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENP-----KVTDDDDAKMAQMVC 795 (808)
Q Consensus 721 vDQs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 795 (808)
||||||+|||+++++.++|.++|++|||+||||+|||||+++++++++||||++.+...+ +.+.+........+|
T Consensus 721 IDQsqS~nl~l~~~t~~~i~~~~~~Awk~GLKt~~YY~R~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (813)
T PLN02437 721 IDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTASLKPSATGVAAPEEEDVETKMAQMVC 800 (813)
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHcCCCeeEEEEeccccccceEEecchhhhccccccccCccccccchhhhhccC
Confidence 999999999999989999999999999999999999999999999999999976644321 111112223345789
Q ss_pred ccCCccccccCCC
Q 003602 796 SLTNREECMACGS 808 (808)
Q Consensus 796 ~~~~~~~c~~c~~ 808 (808)
+++|||.||+||+
T Consensus 801 ~~~~~~~c~~c~~ 813 (813)
T PLN02437 801 SLDNREECLACGS 813 (813)
T ss_pred CCCCccccccccC
Confidence 9999999999996
No 3
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.7e-200 Score=1765.53 Aligned_cols=778 Identities=33% Similarity=0.577 Sum_probs=730.8
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~r 80 (808)
|+|+||||++|+|+++||+++|.++|.||+.+.+++.+|..++..++++||||+||+++++++|++|+++||||++||||
T Consensus 3 ~~v~k~~g~~e~~~~~ki~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~tt~el~~~~~~~a~~~~~~~pdy~~~Aar 82 (822)
T PRK06539 3 ITVVKRDGSKEPYDANKVNAAIEDAARGLDDAITWVTQLASELEITLFDGITTQQLDEAVIQVALQNVKDDPAFDTVAAR 82 (822)
T ss_pred eEEEecCCccccCCHHHHHHHHHHHhcccCcccCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHhhhhCccHHHHHHH
Confidence 57999999999999999999999999999766678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhH--HHHHH-----HHhhhhccCCcccCcchhHHHHHHHhHHHHhhhhcccccCCCChhhHHHHHH
Q 003602 81 IVVSNLHKNTKKSFSE--TIKDM-----YNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLER 153 (808)
Q Consensus 81 l~~~~l~k~~~~~~~~--~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~ 153 (808)
|++.+|||++.++|.+ .++.+ +.++ +.++..|++++++++. +|+++|+++|+|+||+.|+|+|+++|++
T Consensus 83 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~~i~~~rD~~~~y~g~~~l~~ 158 (822)
T PRK06539 83 LLLKKIYKRVLGDYDSPEELQDLHANHFRRTI--EKGVAEGLLDSRLGGL--FDLERLAAALDPTRDELLKYIGVVTLNN 158 (822)
T ss_pred HHHHHHHHHHhccccchhHHHHHhHHHHHHHH--HhhccccccCHHHhCH--hHHHHHHhhhChhhhcCCCHHHHHHHHh
Confidence 9999999999988864 23333 2223 4678889999999873 6999999999999999999999999999
Q ss_pred hhcccc-CCcccCCHHHHHHHHHhhhcc---CChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHH
Q 003602 154 SYLLKV-QGKVVERPQHMLMRVAVGIHK---DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIE 229 (808)
Q Consensus 154 ~Yllk~-~g~~~E~pq~~~~RvA~~l~~---~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~ 229 (808)
+||+|. +|+++|+||++|||||++||. ++++++++||++||+++|+||||||+||||+++|||||||+++ +||++
T Consensus 159 rYllk~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fY~~ls~~~f~~atPtL~NaGt~~~qlsSCFl~~v-~Dsl~ 237 (822)
T PRK06539 159 RYGIRARNGDALEVPQYFWMRIAMGLSLNEDDPTSSALAFYEKMSKLEYLAAGSTLVNAGTPYPQLSNCFVMEM-QDDIE 237 (822)
T ss_pred hccccCCCCCEeecHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCceeeeccC-CCcHH
Confidence 999995 788999999999999999985 3578999999999999999999999999999999999999997 79999
Q ss_pred HHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHH
Q 003602 230 GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIF 309 (808)
Q Consensus 230 ~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~ 309 (808)
|||++++++|+++|.|||||+|+|+|||+||+|+|++|+|+|+|||||+||+++++|+||| +||||+|+||++|||||+
T Consensus 238 ~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~d~~~~~v~QgG-~RrGA~~~yL~~wH~DI~ 316 (822)
T PRK06539 238 HIAKTTRDVMWLTKGTGGIGLSVSKLRAQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGG-KKFGALCFYMENWHMDFP 316 (822)
T ss_pred HHHHHHHHHHHHHhhCCceeecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCC-CCcCceEEEecCCCcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred HHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcC-----ceeEEE
Q 003602 310 EFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEG-----KAKKVV 384 (808)
Q Consensus 310 ~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~-----~~~~~v 384 (808)
+||++|+++|++++|++++|+||||||+|||||++|++|+||+|+++|+|.++||++|+++|++||+++ ..+++|
T Consensus 317 eFL~lk~n~g~e~~r~~~~n~sv~i~D~FM~~V~~d~~w~L~~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~g~~~~~~~V 396 (822)
T PRK06539 317 EFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPLETPDLNELYGKAFSKRYAQYVEQAEAGRIRMFKRI 396 (822)
T ss_pred HHHHHhhcCCchhhhhccCceeeeeCHHHHHHHHcCCCeEEECCcccccHHHHhCcHHHHHHHHHHHhccccccceeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999853 347999
Q ss_pred eHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCC
Q 003602 385 QAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMES 464 (808)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~ 464 (808)
+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++++|+++|||+||||++||.+
T Consensus 397 ~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlC~EI~l~~~~~e~~vCNL~SINL~~fv~~------- 469 (822)
T PRK06539 397 TAREQFRAILMSLQTTSHPWLTWKDTINNRALNNNTGTIHLSNLCTEICLPQDRDNVSVCNLASINLSRHLAD------- 469 (822)
T ss_pred eHHHHHHHHHHHHHHhCCCceEehhhHhhcCCCccCCcEeecCCcceeeccCCccccceeeeheeEHHHHhcc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHH
Q 003602 465 HPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQ 544 (808)
Q Consensus 465 ~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~ 544 (808)
+.|||+.|+++|+++||+||+|||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+||+
T Consensus 470 -------------~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~YdS~eA~ 536 (822)
T PRK06539 470 -------------GELDWAQLEESTRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGVMGFTDMVERLGYSYESEEAY 536 (822)
T ss_pred -------------ccCcHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHhcccccccchhHHHHHHHcCCCCCCHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCC-----------CCCcccHHHHHHHHHhcCCc
Q 003602 545 QLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVN-----------PSDRWDWGGLRDMISKNGVR 613 (808)
Q Consensus 545 ~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~-----------~~~~~dW~~Lr~~i~~~G~R 613 (808)
+++++|||+|+|+|++||++||+|+|+||.|++|+|++|+|++|.|... ++..+||+.||++++ +|+|
T Consensus 537 ~l~~~i~e~i~~~A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~~~~~~~~~~~~~~~~dW~~L~~~i~-~GlR 615 (822)
T PRK06539 537 DLIDRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRGVPVDVNRTTRLDWDALRAKVR-GGMR 615 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhhhhccccccccccchhcHHHHHHHHH-hCee
Confidence 9999999999999999999999999999999999999999999987632 123689999999985 6999
Q ss_pred cccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCCh
Q 003602 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPE 693 (808)
Q Consensus 614 Ns~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~ 693 (808)
||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+| ++++++|+..+|++|+++.+|+
T Consensus 616 Ns~l~AiAPTgS~S~i~g~S~gIEP~~s~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~~~~~i~~~~Gsvq~i~~iP~ 694 (822)
T PRK06539 616 NATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPD 694 (822)
T ss_pred ccceeecCCchhHHHhcCCCCCcCcchhhhheeecccceEEEeCHHHHHHHHHcCCC-HHHHHHHHHhCCCccCcccCCh
Confidence 999999999999999999999999999999999999999999999999999999999 5888889889999999999999
Q ss_pred HHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCCCChhHHHHHHHHHHHcCCceEEEEecCccccccccccccc
Q 003602 694 ELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDT 773 (808)
Q Consensus 694 ~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~ 773 (808)
+++++|+|||||+|+++|+|||+||||||||||+|||+++++.++|.++|++||++|||| |||+|++++++++|||||+
T Consensus 695 ~~~~~f~tA~eI~~~~~I~maA~rQ~~IDqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT-~YYlrt~~~~~~~~~t~~~ 773 (822)
T PRK06539 695 EIKALYRTSFQLSPYAFLEVAARAQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKV 773 (822)
T ss_pred HHHhhcCcHhhCCHHHHHHHHHHHCccchhhcCCeeecCCCCHHHHHHHHHHHHHcCCCe-EEeeccchhhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cccccCCCCC-----------Cc--chhhhhccccccCCcc--ccccCC
Q 003602 774 SVLKENPKVT-----------DD--DDAKMAQMVCSLTNRE--ECMACG 807 (808)
Q Consensus 774 ~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~--~c~~c~ 807 (808)
+...+.++++ +. ..+..+...|+.+.++ .|++|.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (822)
T PRK06539 774 NKSAERRGGPRRGFAGFGAGVPPAVSADLIPGASCPVDAQAPQQCESCR 822 (822)
T ss_pred chhcccCCCCCCcccccCCCCCceeecccccccCCCCCCCCCCCCCCCC
Confidence 8766543321 11 1233456679998775 699995
No 4
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=6.2e-201 Score=1795.51 Aligned_cols=779 Identities=40% Similarity=0.684 Sum_probs=728.2
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~r 80 (808)
|+|+||||++|++|.+||.++|+++|.|| +++|+++|+.++...+++|||++||+++++++|++|++.||||+++|||
T Consensus 149 ~~v~~~~g~~~~l~~ekL~~lI~~a~~gL--envn~d~Lv~kt~r~LydGIttkEL~~aLI~~a~~~~~~~p~y~~~Aar 226 (965)
T PRK07207 149 LNVTLDDGVRRPLDMARLRALIEEACEGL--EAVDAEPILAETLKNLYDGVPMDEVYKALILAARTLIEKEPNYSYVTAR 226 (965)
T ss_pred eEEEeccCccccCCHHHHHHHHHHHhccc--ccCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccCCCHHHHHHH
Confidence 57999999999999999999999999999 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhh--------hhHHHHHHHHhhhh--ccCCcccCcchhHHHHHHHhHHHHhhhhcccccCCCChhhHHH
Q 003602 81 IVVSNLHKNTKKS--------FSETIKDMYNHYNE--RSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKT 150 (808)
Q Consensus 81 l~~~~l~k~~~~~--------~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~ 150 (808)
|++.+|||++.+. +.+....+.+++.. +.|+..++++++++++ ++++|+++|+++||+.|+|+|+++
T Consensus 227 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~i~~~rd~~f~y~g~~~ 303 (965)
T PRK07207 227 LLLDTLRREALGFLGVPEEVTQAEMATRYAEYFPAFIKKGIEAELLDPKLAQF---DLERLGAALDPERDLQFTYLGLQT 303 (965)
T ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHhccchhhhhHHHHHh---hHHHHHHHhhHHHhCCCCHHHHHH
Confidence 9999999998641 11222222222111 4688889999988765 899999999999999999999999
Q ss_pred HHHhhccccCCcccCCHHHHHHHHHhhhccC---ChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCC
Q 003602 151 LERSYLLKVQGKVVERPQHMLMRVAVGIHKD---DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDS 227 (808)
Q Consensus 151 l~~~Yllk~~g~~~E~pq~~~~RvA~~l~~~---~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS 227 (808)
|+++||+|.+|.++|+||+||||||++||.. +.+++++||++||+++|+||||||+||||+++|||||||+++ +||
T Consensus 304 l~~rYllk~~~~~~E~pq~~~mRVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtl~NaGt~~~qlsSCfl~~v-~Ds 382 (965)
T PRK07207 304 LYDRYFLHVDGTRIELPQAFFMRVAMGLALNEIDREARAIEFYNLLSSFDFMSSTPTLFNSGTLRPQLSSCYLTTV-PDD 382 (965)
T ss_pred HHHhhcccCCCCeeecHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCeecCCHHHhcCCCCCCCeeeeEeCCC-ccc
Confidence 9999999988889999999999999999963 568999999999999999999999999999999999999987 899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCccc
Q 003602 228 IEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307 (808)
Q Consensus 228 ~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~D 307 (808)
++|||++++++|++||+|||||+|+|+|||+|++|+|++|+|+|||||||+||+++.+|+||| +|+||+|+||++||||
T Consensus 383 l~~I~~~~~~~a~lsk~gGGiG~~~s~lR~~Gs~I~g~~g~ssGvvpflk~~n~~~~~v~QgG-~R~GA~~vyL~~wH~D 461 (965)
T PRK07207 383 LDGIYEAIKDNALLSKFAGGLGNDWTPVRALGSHIKGTNGKSQGVVPFLKVVNDTAVAVNQGG-KRKGAVCAYLETWHLD 461 (965)
T ss_pred HHHHHHHHHHHHHHHhcCCeeeecccccCCCCCccCCCCCCCCChhHHHHHHHHHHHHHHcCC-cCccceeeEecCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcC-----ceeE
Q 003602 308 IFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEG-----KAKK 382 (808)
Q Consensus 308 I~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~-----~~~~ 382 (808)
|++||++|+++|++++|++++|+||||||+|||||++|++|+||+|+++|+|+++||++|+++|++||+.+ ..++
T Consensus 462 I~eFL~lk~~~gde~~r~~~l~~av~ipD~FM~rv~~d~~w~Lf~P~~~~~L~~~yG~~f~~~Y~~~e~~~~~g~~~~~~ 541 (965)
T PRK07207 462 IEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFSPSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFK 541 (965)
T ss_pred HHHHHHHhhccCchhhHhhcCchhhccCHHHHHHHHcCCCEEEecCcccccHHhhhhhHHHHHHHHHHHhcccCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999853 3579
Q ss_pred EEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCC
Q 003602 383 VVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPM 462 (808)
Q Consensus 383 ~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~ 462 (808)
+|+||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++++|++||||+||||++||.+
T Consensus 542 ~v~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~SNlCtEI~l~~~~~e~avCNLgSINL~~~v~~----- 616 (965)
T PRK07207 542 KIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAHIKD----- 616 (965)
T ss_pred EeeHHHHHHHHHHHHHHhCCCeeehhHHHHhcCCcccCCeEeecCCCcceeecCCCcceeeeeccceeHHHHhhC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHH
Q 003602 463 ESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTE 542 (808)
Q Consensus 463 ~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~e 542 (808)
+..|||+.|+++|+++||+||+|||+|.||+|+++++|+++|+||||+|||||+|+++|++|+|+|
T Consensus 617 --------------~~~~D~~~l~~~v~~avr~LDnVID~n~yp~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~e 682 (965)
T PRK07207 617 --------------GAKLDHEKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDE 682 (965)
T ss_pred --------------CCcCCHHHHHHHHHHHHHhccceeeCCCCcHHHHHHHhhccCCccccHHHHHHHHHHCCCCCCCHH
Confidence 236999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCC-----------CCCcccHHHHHHHHHhcC
Q 003602 543 AQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVN-----------PSDRWDWGGLRDMISKNG 611 (808)
Q Consensus 543 a~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~-----------~~~~~dW~~Lr~~i~~~G 611 (808)
|++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|++|+|.|+.. .+..+||++||++|++||
T Consensus 683 A~~l~~~i~e~i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~~~r~~~~~~~~~~~~dW~~Lr~~i~~~G 762 (965)
T PRK07207 683 AVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARGGYLEVDRSSTLDWDALRARIKKHG 762 (965)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhhhhhcccccccccchhhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999988632 234679999999999999
Q ss_pred CccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCC
Q 003602 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQI 691 (808)
Q Consensus 612 ~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~l 691 (808)
+|||+++|||||+|||+|+|+|+||||+|+|+|.|++.+|+|+++|++|+++|+++|+|++++++++...+||+|++|.+
T Consensus 763 ~RNs~l~AiAPT~S~S~i~g~s~giEP~~s~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~i 842 (965)
T PRK07207 763 MRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRI 842 (965)
T ss_pred ccccceeccCChHHHHHHhCCCCccCcCchhhheeeccCCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCCCChhHHHHHHHHHHHcCCceEEEEecCccccccccccc
Q 003602 692 PEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTV 771 (808)
Q Consensus 692 p~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~ 771 (808)
|++++++|+|||||+|+|+|+|+|+||||||||||+|||+++++.++|.++|++||++|||| +||||++++++++||||
T Consensus 843 p~~~k~~f~tA~ei~~~~~I~~~A~rQ~~IDqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlKt-~YY~Rs~~~~~~~~~t~ 921 (965)
T PRK07207 843 PADLKALYATAFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTV 921 (965)
T ss_pred ChhHHhhcccCccCCHHHHHHHHHHHcCcchhhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEEecccccchhhhcc
Confidence 99999999999999999999999999999999999999999899999999999999999999 89999999999999999
Q ss_pred cccccccCCCC-CC--------cchhhhhccccccCCccccccCC
Q 003602 772 DTSVLKENPKV-TD--------DDDAKMAQMVCSLTNREECMACG 807 (808)
Q Consensus 772 ~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~c~~c~ 807 (808)
+...+.+++++ +. .......+.+|++++|+ ||+||
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 965 (965)
T PRK07207 922 NTGALNAVSSGGGGAGGAAAAAAAPPAADPKACSIDDPD-CEACQ 965 (965)
T ss_pred ccccccccCCCccccccccccccCCCCCCCCcccCCCCC-CcccC
Confidence 97655543331 00 01112336789999886 99997
No 5
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=2.5e-198 Score=1789.88 Aligned_cols=775 Identities=38% Similarity=0.642 Sum_probs=718.7
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccCCCChHHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~r 80 (808)
++|+||||++|+||++||+++|.++|.||+ +.+++..++.++..++||||||+||+++++++|++|++.||||++||||
T Consensus 236 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~p~y~~~Aar 314 (1046)
T PRK12365 236 YEVLSKDGSTYTMTKSQLLAHFAWACSRFP-ETTDAALLADMAFANFYSGIKESEVVLACIMAARANIEKEPDYAFVAAE 314 (1046)
T ss_pred eEEEEeCCccccCCHHHHHHHHHHHhcccc-ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhCccCCCHHHHHHH
Confidence 469999999999999999999999999996 4688899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh------hhhHHHHHHHHhhhhccCCcccCcchhHHHHHHHhHHHHhhhhcccccCCCChhhHHHHHHh
Q 003602 81 IVVSNLHKNTKK------SFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERS 154 (808)
Q Consensus 81 l~~~~l~k~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~ 154 (808)
|++.+|||++.+ .|.+.+..++.... ..|.. +.+.++ +...++++|+++|+++||+.|+|+|+++|+++
T Consensus 315 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~---~~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~~ 389 (1046)
T PRK12365 315 LLLDVVYKEALGKSKYDEDLEEAHKDHFKRYI-LEGDT-YRLNPE---LKHYDLDALAEALDLSRDLQFSYMGVQNLYDR 389 (1046)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHH-hcCch-hhhHHH---hhhhhHHHHHHHHhHHhhCCCCHHHHHHHHHh
Confidence 999999999965 34443333332211 12211 233333 34559999999999999999999999999999
Q ss_pred hccccCCcccCCHHHHHHHHHhhhcc----CChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHH
Q 003602 155 YLLKVQGKVVERPQHMLMRVAVGIHK----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEG 230 (808)
Q Consensus 155 Yllk~~g~~~E~pq~~~~RvA~~l~~----~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~ 230 (808)
||+|.+|+++|+||++|||||++||. ++.+++++||++||+++|+||||||+||||+++|||||||+++ +||++|
T Consensus 390 Yl~~~~~~~~E~pq~~~mRVA~~la~~e~~~~~~~a~~fy~~ls~~~f~~atPtl~NaGt~~~qlsSCfl~~v-~Dsl~~ 468 (1046)
T PRK12365 390 YFNHHEGRRLETPQIFWMRVSMGLALNEGQDKTSWAITFYNLLSTFRYTPATPTLFNSGMRHSQLSSCYLSTV-QDDLVH 468 (1046)
T ss_pred hCcCCCCCcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCceeeEeCCC-cccHHH
Confidence 99998888999999999999999985 3567899999999999999999999999999999999999987 799999
Q ss_pred HHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHH
Q 003602 231 IYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFE 310 (808)
Q Consensus 231 I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~ 310 (808)
||++++++|++||+|||||+|+|+|||+||+|+|++|+|+|+|||||+||+++.+|+||| +|+||+|+||++|||||++
T Consensus 469 I~~~~~~~a~lsk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpflk~~n~~~~~v~QgG-~R~GA~~~yL~~wH~DI~e 547 (1046)
T PRK12365 469 IYKVISDNAMLSKWAGGIGNDWTAVRATGALIKGTNGKSQGVIPFIKVANDTAVAVNQGG-KRKGAVCVYLEVWHLDYED 547 (1046)
T ss_pred HHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCChHhHHHHHHHHHHHHHhCC-cccCceeEEEeCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHc---C--ceeEEEe
Q 003602 311 FLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKE---G--KAKKVVQ 385 (808)
Q Consensus 311 Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~---~--~~~~~v~ 385 (808)
||++|+++|++++|++++|+||||||+||+||++|++|+||||+++|+|.++||++|+++|++||+. | ..+++|+
T Consensus 548 FL~lk~~~g~e~~r~~~l~~~v~ipD~FM~~v~~~~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~ye~~~~~g~~~~~~~v~ 627 (1046)
T PRK12365 548 FLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFSPDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVE 627 (1046)
T ss_pred HHHHhhhcccHHHHhhccchhhccCHHHHHHHHcCCCeEEECccccccHHHHhchHHHHHHHHHHHhhhcCCcceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999975 4 3569999
Q ss_pred HHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCC
Q 003602 386 AQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESH 465 (808)
Q Consensus 386 Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~ 465 (808)
||+||++|++++|+||+|||+|+|+||++||++|.|+|++||||+||+|+++++|++||||+||||++||.+
T Consensus 628 Ar~Lw~~I~~~~~eTG~P~i~f~D~~N~~~~~~~~G~I~~SNlC~Ei~l~~~~~e~~vCNL~SiNL~~~v~~-------- 699 (1046)
T PRK12365 628 AEDLWRKMLSMLYETGHPWMTFKDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVEHIVN-------- 699 (1046)
T ss_pred HHHHHHHHHHHHHHhCCCeEEehhhhhhcCCCCcCCeeEecCCCcceeecccCCcCceeecchhhHHHhccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHH
Q 003602 466 PSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQ 545 (808)
Q Consensus 466 ~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~ 545 (808)
+.|||+.|+++|+++|||||+|||+|.||+|+++++|+++|+||||+|||||+|+++|+||+|+||++
T Consensus 700 ------------~~~D~~~l~~~v~~avr~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~ 767 (1046)
T PRK12365 700 ------------DGLDEEKLSETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLGVMGFQDALYKLNISYASQEAVE 767 (1046)
T ss_pred ------------ccCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhcCCcccchhhHHHHHHHcCCCCCCHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCC------------CCCcccHHHHHHHHHhcCCc
Q 003602 546 LNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVN------------PSDRWDWGGLRDMISKNGVR 613 (808)
Q Consensus 546 l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~------------~~~~~dW~~Lr~~i~~~G~R 613 (808)
|+++|||+|+|+|++||++||+|+|+||.|++|+|++|+|++|.|... ++..++|++||++|++||+|
T Consensus 768 ~~~~i~e~i~~~A~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~~~~~~~~~~~~~~~~~~~~W~~Lr~~i~~~GlR 847 (1046)
T PRK12365 768 FADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLLMDTSSRKDWEPVRSLIKEYGMR 847 (1046)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhhhhhhhccccccccccchhhHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999988631 23468999999999999999
Q ss_pred cccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCCh
Q 003602 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPE 693 (808)
Q Consensus 614 Ns~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~ 693 (808)
||+|+|||||+|||+|+|+|+||||+|+|+|.|++.+|+|.++|++|+++|+++|+|++++++.|...+||||+++.+|+
T Consensus 848 Ns~l~AiaPT~S~S~i~g~s~giEP~~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~ 927 (1046)
T PRK12365 848 NSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPD 927 (1046)
T ss_pred hhcceeeCCCchHHHHhCCCCCcccchhhhheeeccCCeEEEecHHHHHHHHHcCCChHHHHHHHHHhcCCcccccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCCCChhHHHHHHHHHHHcCCceEEEEecCccccccccccccc
Q 003602 694 ELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDT 773 (808)
Q Consensus 694 ~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~ 773 (808)
++|++|+|||||+|+|+|+|+|+||||||||||+|||+++++.++|.++|++||++|||| |||||++++++++|||||.
T Consensus 928 ~~k~~y~tA~ei~~~~~I~~~A~rQk~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~GlKt-~YY~Rt~~a~~~~~~t~~~ 1006 (1046)
T PRK12365 928 HLKKIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDI 1006 (1046)
T ss_pred HHHhhcCcHHhCCHHHHHHHHHHHcCccchhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccchhhhhcccC
Confidence 999999999999999999999999999999999999999989999999999999999999 9999999999999999998
Q ss_pred cccccCCCC--CCc---c---hh-hhhccccccCCccccccCC
Q 003602 774 SVLKENPKV--TDD---D---DA-KMAQMVCSLTNREECMACG 807 (808)
Q Consensus 774 ~~~~~~~~~--~~~---~---~~-~~~~~~~~~~~~~~c~~c~ 807 (808)
.. ++.+++ +.+ + .. ..++.+|++ +|+ ||+||
T Consensus 1007 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 1046 (1046)
T PRK12365 1007 NK-RGIQPRWMKNKSASTSIVVERAKKTPVCSL-EEG-CESCQ 1046 (1046)
T ss_pred Cc-ccCCCCcccccccccccCCCcccCCCcccC-CCC-CcccC
Confidence 75 433321 000 0 01 223578999 554 99997
No 6
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=4e-187 Score=1639.83 Aligned_cols=697 Identities=38% Similarity=0.621 Sum_probs=650.2
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhc-cCCCChHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMT-TNHPDYASLAA 79 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~-~~~p~y~~~A~ 79 (808)
|+|+||||++|+|+++||++++.++|.||+ .+|+.+|..++..++++||||+||++++|++|++|+ .+||||+++||
T Consensus 2 ~~v~k~~g~~e~~~~~ki~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~t~~el~~~~i~~a~~~~~~~~pdy~~~Aa 79 (789)
T PRK08447 2 ITVVKRNGRIEPLDISKIQKYTSDAVEGLE--GVSQSELEVDAKIQFRDGITTEEIQQTLIKTAVDKIDIDRPNWTFVAA 79 (789)
T ss_pred ceEEeeCCccccCCHHHHHHHHHHHhcCCc--cCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHHH
Confidence 579999999999999999999999999996 499999999999999999999999999999999999 59999999999
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHhhhhccCCcccCcchhHHHHHHHhHHHHhhhhcccccCCCChhhHHHHHHhhcc
Q 003602 80 RIVVSNLHKNTK--KSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLL 157 (808)
Q Consensus 80 rl~~~~l~k~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yll 157 (808)
||++.+|||++. ..| ..++.++. .|...+.+..++++ ..++++|+++|+++||+.|+|+|+++|+++||+
T Consensus 80 Rl~~~~l~k~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYll 151 (789)
T PRK08447 80 RLFLYDLYHKVSGFTGY----NHLKEYFE--KGEKEGRILLGLKE--KYDLDDLNAYIKPERDLQFNYLGIKTLYDRYLI 151 (789)
T ss_pred HHHHHHHHHHhhccccH----HHHHHHHH--HHhhcCccchhhhc--cccHHHHHHHhCHHHhcCCCHHHHHHHHHhhCc
Confidence 999999999994 333 23333221 23334456555543 247999999999999999999999999999999
Q ss_pred cc-CCcccCCHHHHHHHHHhhhccC---ChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHHHH
Q 003602 158 KV-QGKVVERPQHMLMRVAVGIHKD---DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYD 233 (808)
Q Consensus 158 k~-~g~~~E~pq~~~~RvA~~l~~~---~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I~~ 233 (808)
|. +|+++|+||+||||||+++|.. +.+++++||++||+++|+||||||+|||++++|||||||+.+ +||++|||+
T Consensus 152 k~~~g~~~E~pq~~~mrVA~~la~~e~~~~~~a~~fy~~ls~~~~~~aTPtL~Nagt~~~qlsSCFl~~v-~Dsl~~I~~ 230 (789)
T PRK08447 152 KDRNNNPIELPQHMFMAIAMFLAQNELDPQKWAKKFYDVISKFEVMLATPTLSNARTTRHQLSSCYIGST-PDNIEGIFD 230 (789)
T ss_pred cCCCCCEeeCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHcCCeecCCccccccCCCCCCeeeeEeCCC-CCCHHHHHH
Confidence 94 6888999999999999999974 457899999999999999999999999999999999999886 899999999
Q ss_pred HHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHH
Q 003602 234 TLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLD 313 (808)
Q Consensus 234 ~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~ 313 (808)
+++++|++||.|||||+|+|+|||+||+|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++|||||++||+
T Consensus 231 ~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~~k~~n~~~~~v~QgG-~RrGA~avyL~~wHpDI~~FL~ 309 (789)
T PRK08447 231 SYKEMALLSKYGGGIGWDWSKVRAMGSYIDGHKNAAGGIIPFLKITNDIAIAVDQLG-TRKGAIAVYLEPWHMDISDFID 309 (789)
T ss_pred HHHHHHHHHhcCCeEeecccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHHhCC-ccccceEEEEeCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHc-CceeEEEeHHHHHHH
Q 003602 314 LRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKE-GKAKKVVQAQNLWFE 392 (808)
Q Consensus 314 ~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~-~~~~~~v~Ar~L~~~ 392 (808)
+|+++|++++|++++|+||||||+|||||++|++|+||+|+++++|.++||++|++.|.+||++ ++.+++|+||+||++
T Consensus 310 ~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~~~~~V~AreLw~~ 389 (789)
T PRK08447 310 LRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFDPYECKDLTELYGEEFEKRYLEYEKDEKIIKEYINAKELWKK 389 (789)
T ss_pred HhhcccchhhhhhcCeeeeeeCHHHHHHHHcCCCEEEecCCccchhhhhhChHHHHHHHHHHhccCeeeEEEeHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999984 667899999999999
Q ss_pred HHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCC---------------------------------
Q 003602 393 ILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPT--------------------------------- 439 (808)
Q Consensus 393 I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~--------------------------------- 439 (808)
|++++|+||+|||+|+|+|||+||++|.|+|++||||+||+|+++|+
T Consensus 390 I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 469 (789)
T PRK08447 390 ILTNYFETGLPFLCFKDNANRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKIEFEDGSIEFFEEEELVTVDSGITKKAK 469 (789)
T ss_pred HHHHHHHHCCceEEEhhhhhhcCCCCCCCeeeecccccccCCCCCccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998773
Q ss_pred -----------------------cceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHH
Q 003602 440 -----------------------ETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENL 496 (808)
Q Consensus 440 -----------------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~L 496 (808)
++++||||||||++|+ |++.|+++|+++||+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~ge~~vCNLgSiNL~~~v-------------------------~~~~l~~~v~~avR~L 524 (789)
T PRK08447 470 KITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLSKIN-------------------------TKEDIERVVPIAIRML 524 (789)
T ss_pred ccccccccccccccccccccCCCCeeEEecHHHHHHHhc-------------------------CHHHHHHHHHHHHHHH
Confidence 6799999999999986 3588999999999999
Q ss_pred HHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 003602 497 NKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYH 576 (808)
Q Consensus 497 d~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~ 576 (808)
|+|||+|.||+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+|+||.|+
T Consensus 525 DnVID~n~yP~~~~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLAkErG~fp~f~ 604 (789)
T PRK08447 525 DNVIDLNFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFE 604 (789)
T ss_pred HHHHhcccCChHHHHHHHhcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCccccCCCCC----------CcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeE
Q 003602 577 GSPVSKGILQPDMWGVNPS----------DRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSR 646 (808)
Q Consensus 577 ~S~~~~G~l~~d~~~~~~~----------~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R 646 (808)
+|+|++|+|++|.|+.... ..++|++||++|++||+|||+++|||||+|||+|+|+|+||||++++.|.|
T Consensus 605 ~S~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~L~~~I~k~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s~~~~~ 684 (789)
T PRK08447 605 GSNWSKGIFPIDKANEEAKKLVERGGLFDSACDWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKWFE 684 (789)
T ss_pred cChhhcCccchhhhhchhhhhhcccccccchhhHHHHHHHHHHhCccccceeeeCChHHHHHHhCCCcCcCcccchheeE
Confidence 9999999999998876431 246999999999999999999999999999999999999999999999999
Q ss_pred EcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccc
Q 003602 647 RVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQS 726 (808)
Q Consensus 647 ~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S 726 (808)
++.+|+|+++|++|. +++.++|+|||||+|+++|+|+|+||||||||||
T Consensus 685 ~~~~g~~~~~~p~L~-------------------------------~~~~~~y~tA~ei~~~~~I~~~A~rQk~IDQsiS 733 (789)
T PRK08447 685 ENLSGLIPVVVPNLS-------------------------------PETWQYYTPAYDLDQKDLIKAAAVRQKWIDQGQS 733 (789)
T ss_pred EeccceeEeeCCCCC-------------------------------hHHHHHhchHHhCCHHHHHHHHHHHhcccchhhc
Confidence 999999998888662 3345689999999999999999999999999999
Q ss_pred eeEeeC--CCChhHHHHHHHHHHHcCCceEEEEecCcccccc
Q 003602 727 LNIHMD--QPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADA 766 (808)
Q Consensus 727 ~nl~~~--~~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (808)
+|||++ .++.++|.++|++|||+|||| +||+|+++....
T Consensus 734 ~nl~~~~~~~t~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~~~ 774 (789)
T PRK08447 734 LNIFLSLDKASGKYLNEIYTLAWKLGLKS-TYYLRSESPESE 774 (789)
T ss_pred CccccCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeccchhhc
Confidence 999999 368999999999999999999 899999887643
No 7
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=8e-185 Score=1621.59 Aligned_cols=702 Identities=29% Similarity=0.503 Sum_probs=659.0
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAA 79 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~-~~p~y~~~A~ 79 (808)
|+|+||||+.|+|+++||+++|.++|.|++ ||+.+|+.++..++++||||+||+++++++|++|++ .||||++|||
T Consensus 4 ~~v~kr~G~~e~~~~~k~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~a~~~~~~~~pdy~~~Aa 80 (753)
T PHA02572 4 INVIKSSGVSQPFDLEKIHKVLEWACEGTG---VDPSELEENSKIQLRDGMTTKDIQEILIKSAADLISVEEPDYQYVAA 80 (753)
T ss_pred eEEEeeCCccccCCHHHHHHHHHHHhcCCC---CCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCCccCccHHHHHH
Confidence 579999999999999999999999999965 999999999999999999999999999999999986 9999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcchhHHH-HHHHhHHHHhhhhcccccCCCChhhHHHHHHhhccc
Q 003602 80 RIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYD-IIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (808)
Q Consensus 80 rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk 158 (808)
||++++|||+++++|.. ..+.+++. .++..+++++++++ |+.+++++|+++|+|+||+.|+|+|+++|+++||+|
T Consensus 81 Rl~~~~l~k~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~f~y~g~~~l~~rYllk 156 (753)
T PHA02572 81 RLLMFALRKQVYGQFEP--PSFIDHIS--KCVNEGKYDPEILSKYSAEEITYLESFIDHDRDFEFTYAGAMQLKEKYLVQ 156 (753)
T ss_pred HHHHHHHHHHHhcccch--hhHHHHHH--HHHhcCchhHHHHHHcCHHHHHHHHHhhchhhccCCCHHHHHHHHHhhCCc
Confidence 99999999999988742 22332221 23445789999987 779999999999999999999999999999999999
Q ss_pred c--CCcccCCHHHHHHHHHhhhccC-----ChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHH
Q 003602 159 V--QGKVVERPQHMLMRVAVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGI 231 (808)
Q Consensus 159 ~--~g~~~E~pq~~~~RvA~~l~~~-----~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I 231 (808)
. +|+++|+||+||||||++||.. +++++++||++||+++|+||||||+||||+++|||||||+++ +||++||
T Consensus 157 ~~~~~~~~E~pq~~~~rVA~~la~~e~~~~r~~~a~~fy~~ls~~~~~paTPtl~naGt~~~qlsSCFl~~v-~Dsl~~I 235 (753)
T PHA02572 157 DRSTGEIYETPQFAYMLIAMALHQDEPKEDRLEHVIRFYNAVSTRKISLPTPIMAGVRTPTRQFSSCVVIES-GDSLDSI 235 (753)
T ss_pred CCCCCceecCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCcCCCChhhhcCCCCCCcccceeeCCC-CCCHHHH
Confidence 4 4788999999999999999973 377899999999999999999999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHH
Q 003602 232 YDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEF 311 (808)
Q Consensus 232 ~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~F 311 (808)
+++++++|.+.+.|||||+|+|+|||+|++|+|++|+|+|+|||||+||+++++|+||| +||||+|+||++|||||++|
T Consensus 236 ~~~~~~~a~~~sk~gGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~d~~~~~v~QgG-~R~GA~~vyL~~wHpDI~~F 314 (753)
T PHA02572 236 NKTAMAIVKYISKRAGIGINAGMIRAEGSKIRGGEVRHTGVIPFWKHFQTAVKSCSQGG-IRGGAATAYYPIWHLEVEDL 314 (753)
T ss_pred HHHHHHHHHHHHhCCeEEeeccccCCCCCccCCCCCCCCChhhHHHHHHHHHHHHhcCC-cccCceEEEEeCCCcCHHHH
Confidence 99999999766677899999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred HHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCC-chhhh---chHHHHHHHHHHHcC-ceeEEEeH
Q 003602 312 LDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPG-LADCW---GTEFERLYTKYEKEG-KAKKVVQA 386 (808)
Q Consensus 312 l~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~-L~~~y---g~eF~~~Y~~~e~~~-~~~~~v~A 386 (808)
|++|+++|+++.|++++|+||||||+|||||++|++|+||+|+++++ |.+.| |++|+++|++||+++ +.+++|+|
T Consensus 315 L~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~w~Lf~P~~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~A 394 (753)
T PHA02572 315 LVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFSPHDVGGELYDAYFADQDRFRELYEALEKDPSVRKKRIKA 394 (753)
T ss_pred HHHhcccCcchhhhhhhhhHhhcCHHHHHHHHcCCCEEEeCCccCccchhhhhccchhHHHHHHHHHHhcccceeEEEeH
Confidence 99999999999999999999999999999999999999999999998 99999 599999999999975 56899999
Q ss_pred HHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCC-------CcceeeeccccChhhhhhhcC
Q 003602 387 QNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSP-------TETAVCNLASIALPRYVREMG 459 (808)
Q Consensus 387 r~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~-------~e~~~CNL~SInL~~~v~~~~ 459 (808)
|+||++|++++|+||+|||+|+|+||+++|+ .|+|++||||+||+|++++ +|+++|||+||||++|
T Consensus 395 reLw~~I~~~~~etG~Pyi~f~D~~N~~~~~--~g~I~~SNlC~Ei~l~~~~~~~~d~~~e~~~CNL~SINL~~~----- 467 (753)
T PHA02572 395 QELFLLLLKERSETGRIYIMFIDHCNNHSPF--KDPIRQSNLCCEIALPTKPLNHIDGEGEIALCTLSAIVLGNF----- 467 (753)
T ss_pred HHHHHHHHHHHhccCCcceEeehhhhhcCcc--cCceeecCCCccccCCCCccccccCCCceEEEECHHHHHHHh-----
Confidence 9999999999999999999999999999998 8999999999999999987 8899999999999998
Q ss_pred CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCC
Q 003602 460 VPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539 (808)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~ 539 (808)
|||+.|+++|+++||+||+|||.+.||++++ ++|+++|+||||+|||||+|+++|++|+
T Consensus 468 --------------------~D~~~l~~~v~~avr~LDnVID~~~yP~~~~-~~~~~~R~IGLGv~Glad~L~~lgi~Y~ 526 (753)
T PHA02572 468 --------------------EDQDEIEELAEVAVRALDNLLDYQDYPVPAA-LKAKKRRSLGVGVTNYAHYLAKNFASYE 526 (753)
T ss_pred --------------------cCHHHHHHHHHHHHHHHHHHHhccCCChHHH-HhhhhcCccccchhHHHHHHHHCCCCcC
Confidence 4789999999999999999999999999999 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCC------CcccHHHHHHHHHhcCCc
Q 003602 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS------DRWDWGGLRDMISKNGVR 613 (808)
Q Consensus 540 S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~------~~~dW~~Lr~~i~~~G~R 613 (808)
|+|| +|+++|||+|+|+|++||++||||+|+||.|++|+|++|+|++|.|+..+. ..+||++||++|++||+|
T Consensus 527 S~eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~~~~~~~~~~~dW~~L~~~i~~~GlR 605 (753)
T PHA02572 527 DANA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDELVAPKYNCDWESLREDLKKYGIR 605 (753)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchhhhhcccchhhhHHHHHHHHHHhCcc
Confidence 9999 999999999999999999999999999999999999999999999886432 247999999999999999
Q ss_pred cccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCCh
Q 003602 614 NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPE 693 (808)
Q Consensus 614 Ns~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~ 693 (808)
||+++|||||+|||+|+|+|+||||+|+++|+|++.+|+|+++||++ +
T Consensus 606 Ns~l~AiaPT~S~S~i~g~s~giEP~~s~~~~r~~~~G~~~~~~p~l--------------------------------~ 653 (753)
T PHA02572 606 NSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKEGPFNQVVPNV--------------------------------E 653 (753)
T ss_pred ccceeeeCCcHHHHHHhCCCCccCcccccEEEEEecCceEEEeCCCH--------------------------------H
Confidence 99999999999999999999999999999999999999999988876 2
Q ss_pred HHHhhhhchhcc---ChHHHHHHHHHhCCccccccceeEeeCCC-------ChhHHHHHHHHHHHcCCceEEEEecCccc
Q 003602 694 ELKAIYKTVWEI---KQKTLVDMAVDRGCYIDHSQSLNIHMDQP-------NFGKLTSLHFHAWLRGLKTGMYYLRSRAA 763 (808)
Q Consensus 694 ~~k~~y~tA~ei---~~~~~i~~~a~~Q~~vDQs~S~nl~~~~~-------~~~~l~~~~~~Awk~GlKt~~YY~r~~~~ 763 (808)
+++++|+||||| +|+++|+|||+||||||||||+|||+.++ +.++|.++|++|||+|||| +||+||+++
T Consensus 654 ~~~~~ykta~~i~~~~~~~~i~~~A~rq~~IDQsqS~nl~~~~~~~~~~~~~~~~l~~~~~~Aw~~GlKT-~YY~rt~~~ 732 (753)
T PHA02572 654 TLKDLYDLLWDLAKKGNKGYLTQVAIMQKFVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHNTRDG 732 (753)
T ss_pred HHHHHHHhHHHhcccChHHHHHHHHHHhccCchhhcceeeecCCcCcccccCHHHHHHHHHHHHHhCCce-EeecCcccc
Confidence 345689999999 99999999999999999999999999653 4689999999999999999 899999999
Q ss_pred cccccccccc
Q 003602 764 ADAIKFTVDT 773 (808)
Q Consensus 764 ~~~~~~~~~~ 773 (808)
+++++..|..
T Consensus 733 ~~~~~~~~~~ 742 (753)
T PHA02572 733 KGTEDYEIET 742 (753)
T ss_pred cccccccccc
Confidence 9998877653
No 8
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.8e-184 Score=1616.50 Aligned_cols=693 Identities=34% Similarity=0.543 Sum_probs=647.5
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhh-------------
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAM------------- 67 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~------------- 67 (808)
|+|+||||+.|+|+++||+++++++|.||+. +|+..+..++..++++||||+||++++|++|++|
T Consensus 3 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (764)
T PRK07088 3 IKIKKRDGQYEPLQVEKTKKMVKLACEGLYG--CDPLELELDSRIQFRDGMTTKEIQKSLIQTAIEKVIQNSKDNNGNNT 80 (764)
T ss_pred eEEEeeCCccccCCHHHHHHHHHHHhcCCcc--CCHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccccccccccccC
Confidence 5799999999999999999999999999964 9999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHHhhhhh--hHH-HHHHHHhhhhccCCcccCcchhHHH-HHHHhHHHHhhhhcccccCCC
Q 003602 68 TTNHPDYASLAARIVVSNLHKNTKKSF--SET-IKDMYNHYNERSGLKAPLIADDVYD-IIMKNAARLDSEIIYDRDFDY 143 (808)
Q Consensus 68 ~~~~p~y~~~A~rl~~~~l~k~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~ 143 (808)
+..||||+++||||++.+|||++.+.| ... +.+++.++. .+...|++++++++ |+.+++++|+++|+++||+.|
T Consensus 81 ~~~~p~~~~~Aarl~~~~l~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~ 158 (764)
T PRK07088 81 KKTNPNWQYVAARLYVFDLYKEARINRHYNSFGYGDYYELVK--KLVEEKLYGEYLLQNYSKEEIKELEKYIKPERDFLF 158 (764)
T ss_pred CccCccHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHH--HHHhcchhhHHHHHhcCHHHHHHHHHHhhhccccCC
Confidence 568999999999999999999997643 111 334444442 35556789999987 779999999999999999999
Q ss_pred ChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhhhcc-----CChHHHHHHHHHHhcCceecccccccccCCCCCcccc
Q 003602 144 DYFGFKTLERSYLLK-VQGKVVERPQHMLMRVAVGIHK-----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSS 217 (808)
Q Consensus 144 ~y~g~~~l~~~Yllk-~~g~~~E~pq~~~~RvA~~l~~-----~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsS 217 (808)
+|+|+++|+++||+| .+|.++|+||+||||||+++|. .+.+++++||++||+++|+||||||+||||+++||||
T Consensus 159 ~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~paTPtl~NaGt~~~qlsS 238 (764)
T PRK07088 159 NYEGLKLLADRYLVKGFNREILELPQERFMGIAMHLAIPEGKEKRVYYAKKFYDLLSELKATVATPTLSNAGTPFYQLSS 238 (764)
T ss_pred CHHHHHHHHHhhCccCCCCCEeeCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHcCCeecCCcchhcCCCCCCCccc
Confidence 999999999999999 4788999999999999999996 3478899999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccce
Q 003602 218 CFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297 (808)
Q Consensus 218 Cfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~ 297 (808)
|||+++ +||++|||++++++|+++|.|||||+|+|+|||+||+|+|++|.|+|||||||+||+++.+|+||| +||||+
T Consensus 239 CFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssGvvp~lk~~n~~~~~v~QgG-~R~GA~ 316 (764)
T PRK07088 239 CFISVV-DDNLWSIYDVNQKFAQVSKHGGALGIYTGKIRALNSEIRGFKNASGGVIPWIKLYNDTAIAVDQLG-KRKGGA 316 (764)
T ss_pred eeecCc-cccHHHHHHHHHHHHHHHhhCCeEEecccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHhCC-ccccce
Confidence 999986 899999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCC-----Cchhhhch----HHH
Q 003602 298 AVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAP-----GLADCWGT----EFE 368 (808)
Q Consensus 298 ~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~-----~L~~~yg~----eF~ 368 (808)
|+||++|||||++||++|+++|++++|++++|+||||||+|||||++|++|+||+|+++| +|.++||+ +|+
T Consensus 317 avyL~~wHpDI~~FL~lK~~~g~e~~r~~~l~~~v~ipD~FM~~v~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~ef~ 396 (764)
T PRK07088 317 AITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFDPHEIKKVKGYSLEDYYDEEDRKEFT 396 (764)
T ss_pred eEEEeCCCccHHHHHHhccccchhHHHHhhChhhhccCHHHHHHHHcCCCeEEECccccccccCccHHHHhccchhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999998 69999999 999
Q ss_pred HHHHHHHHc-CceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCC--------
Q 003602 369 RLYTKYEKE-GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPT-------- 439 (808)
Q Consensus 369 ~~Y~~~e~~-~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~-------- 439 (808)
++|++||++ ++.+++|+||+||++|++++|+||+|||+|+|+|||+||++|.|+|++||||+||+||++|+
T Consensus 397 ~~Y~~~~~~~~~~~~~v~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlCtEI~q~~~~~~~~~~~~~ 476 (764)
T PRK07088 397 KKYLECEEDTNIPRRTVPVLDIMKKIMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESELLEEEII 476 (764)
T ss_pred HHHHHHHhcccceeEEEeHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCeeeecCCchHhhccCCcccccccccc
Confidence 999999984 66789999999999999999999999999999999999999999999999999999998774
Q ss_pred ---------------cceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q 003602 440 ---------------ETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNY 504 (808)
Q Consensus 440 ---------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~ 504 (808)
++++|||+||||++ ||++.|+++|+++||+||+|||++.
T Consensus 477 ~~~~~~~~~~~~~~g~~~vCNL~SinL~~--------------------------~d~~~l~~~v~~avr~LDnVID~n~ 530 (764)
T PRK07088 477 DENGYYEVVQKIKAGDMVTCNLNSIVLGN--------------------------VDDEELEEVIPTQIRMLDNVISLNY 530 (764)
T ss_pred cccccccccccccCCCceEEEcHHHHHhh--------------------------hcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34899999999976 4678999999999999999999999
Q ss_pred CCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCC
Q 003602 505 YPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGI 584 (808)
Q Consensus 505 yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~ 584 (808)
||+|+++++|+++|+||||||||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.
T Consensus 531 yP~~~a~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~~S~~~~g~ 610 (764)
T PRK07088 531 YPVPEAEITSDKYRAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKGSEWETGK 610 (764)
T ss_pred CchHHHHHHHHhcCccceeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHH
Q 003602 585 LQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDL 664 (808)
Q Consensus 585 l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L 664 (808)
+ |+.|+.. ..+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|+.
T Consensus 611 ~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~~~~~r~~---------------- 670 (764)
T PRK07088 611 Y-FERRGYN---SERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFKRFFMEEK---------------- 670 (764)
T ss_pred h-hhccccc---cccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhhhHhhhhc----------------
Confidence 7 6776543 3489999999999999999999999999999999999999999999998742
Q ss_pred HHcCCCcHHHhhhhhccCCccc--ccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHH
Q 003602 665 TEMGLWSPIIKNKIIYDDGSVQ--KIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTS 741 (808)
Q Consensus 665 ~~~g~~~~~~~~~i~~~~Gsv~--~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~ 741 (808)
+|+++ .+|.+|++.+++|+|||||+|+++|+|+|+||||||||||+|||+++ ++.++|.+
T Consensus 671 -----------------~g~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~IDqsiS~nl~~~~~~t~~~l~~ 733 (764)
T PRK07088 671 -----------------KGSFTPKTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPEYKAKQILN 733 (764)
T ss_pred -----------------CCceeecCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHH
Confidence 23322 45778888899999999999999999999999999999999999996 69999999
Q ss_pred HHHHHHHcCCceEEEEecCccc
Q 003602 742 LHFHAWLRGLKTGMYYLRSRAA 763 (808)
Q Consensus 742 ~~~~Awk~GlKt~~YY~r~~~~ 763 (808)
+|++|||+|||| +||+|+++.
T Consensus 734 ~y~~Awk~GlKt-~yY~R~~s~ 754 (764)
T PRK07088 734 LYIEAWKQGVKT-IYYVRNKSL 754 (764)
T ss_pred HHHHHHHcCCCE-EEEEecCCc
Confidence 999999999999 899999654
No 9
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=8.7e-184 Score=1611.19 Aligned_cols=708 Identities=29% Similarity=0.496 Sum_probs=663.6
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAA 79 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~-~~p~y~~~A~ 79 (808)
|+|+||||+.|+|+.+||+++|+++|.||+ .+|+.+|+.++..+++|||||+||++++|++|++|++ .||||++|||
T Consensus 2 ~~v~k~~g~~~~~~~~k~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~pdy~~~Aa 79 (758)
T PRK09103 2 LLVTKRDGRTERINLDKIHRVITWAAEGLH--NVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA 79 (758)
T ss_pred eEEEEeCCccccCCHHHHHHHHHHHhccCc--cCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhCcccCCcHHHHHH
Confidence 689999999999999999999999999996 4999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcchhHHH-HHHHhHHHHhhhhcccccCCCChhhHHHHHHhhccc
Q 003602 80 RIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYD-IIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (808)
Q Consensus 80 rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk 158 (808)
||++.+|||++.++|.. ..+++++. ..+..+++++++++ |+.+++++|+++|+++||+.|+|+|+++|+++||+|
T Consensus 80 rl~~~~l~k~~~~~~~~--~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~f~y~~~~~l~~rYllk 155 (758)
T PRK09103 80 RLAIFHLRKKAYGQFEP--PALYDHVV--KMVEMGKYDKHLLEDYTEEEFDQMDTFIDHWRDMNFSYAAVKQLEGKYLVQ 155 (758)
T ss_pred HHHHHHHHHHHHccccc--hhHHHHHH--HHHHcCchhHHHHHHcCHHHHHHHHHHhchhhccCCCHHHHHHHhhceecc
Confidence 99999999999988754 13333332 12334689999998 899999999999999999999999999999999998
Q ss_pred --cCCcccCCHHHHHHHHHhhhccC-----ChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHH
Q 003602 159 --VQGKVVERPQHMLMRVAVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGI 231 (808)
Q Consensus 159 --~~g~~~E~pq~~~~RvA~~l~~~-----~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I 231 (808)
.+|+++|+||+||||||+++|.. +++++++||++||+++|+||||+|+|||++++|||||||+++ +||++||
T Consensus 156 ~~~~~~~~E~pq~~~~rVA~~la~~e~~~~~~~~~~~fy~~ls~~~~~~~Tp~l~naGt~~~qlsSCFl~~v-~Dsl~~I 234 (758)
T PRK09103 156 NRVTGEIYESAQFLYILVAACLFSNYPKETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC-GDSLDSI 234 (758)
T ss_pred ccCCCCcccCHHHHHHHHHHHHhhccCccchHHHHHHHHHHHHhCCcCCCCchhcCCCCCCCCeeEEEecCC-CCCHHHH
Confidence 37888999999999999999953 568899999999999999999999999999999999999997 8999999
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHH
Q 003602 232 YDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEF 311 (808)
Q Consensus 232 ~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~F 311 (808)
++++++++++++.|||||+|+|+|||+|++|+|++|.|+|||||||+||+++++|+||| +||||+|+||++|||||++|
T Consensus 235 ~~~~~~~a~~~s~gGGiG~~~s~lR~~Gs~I~g~~g~ssG~vp~mk~~d~~~~~v~QgG-~RrGA~~vyL~~wHpDI~~F 313 (758)
T PRK09103 235 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRGGAATLFYPIWHLEVESL 313 (758)
T ss_pred HHHHHHHHHHHhcCCeEEeeccccCCCCCccCCCCCCCCChHHHHHHHHHHHHHHHcCC-CCCcceEEEecCCCccHHHH
Confidence 99999999988889999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred HHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhh---chHHHHHHHHHHHcC-ceeEEEeHH
Q 003602 312 LDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCW---GTEFERLYTKYEKEG-KAKKVVQAQ 387 (808)
Q Consensus 312 l~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~y---g~eF~~~Y~~~e~~~-~~~~~v~Ar 387 (808)
|++|+++|+++.|++++|+||||||+|||||++|++|+||+|+++|+|++.| |++|+++|.+||+++ +.+++|+||
T Consensus 314 L~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~Ar 393 (758)
T PRK09103 314 LVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFSPSDVPGLYDAFFADQDEFERLYTKYEQDDSIRKKRVKAV 393 (758)
T ss_pred HHhcccCCchhhhHhhCchhhccCHHHHHHHHcCCCeEEeCccccccccccccchhHHHHHHHHHHHhcCCeeeEEEeHH
Confidence 9999999999999999999999999999999999999999999999999998 599999999999876 468999999
Q ss_pred HHHHHHHHHHHhhCCcceeehhhHhhhCCC-CCCCceeeecCCcccccCCCC--------CcceeeeccccChhhhhhhc
Q 003602 388 NLWFEILKSQIETGTPYMLFKDTCNKKSNQ-QNLGTIKSSNLCTEVIQYTSP--------TETAVCNLASIALPRYVREM 458 (808)
Q Consensus 388 ~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~-~~~G~I~~sNlC~EI~~~~~~--------~e~~~CNL~SInL~~~v~~~ 458 (808)
+||++|+++++|||.|||+|+|+||+++|+ +|.|+|++||||+||+|++.| +|+++|||+||||++|
T Consensus 394 eLw~~I~~~~~etG~pfi~fkD~~N~~~p~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~~e~~vCNLgSINL~~~---- 469 (758)
T PRK09103 394 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAI---- 469 (758)
T ss_pred HHHHHHHHHhcCcCCceeeechhhhhcCCCCccCCeeeecCcccccccCCcccccccccCCCeeEEEhHHHHHHHh----
Confidence 999999999999999999999999999996 689999999999999999886 7889999999999987
Q ss_pred CCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCC
Q 003602 459 GVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPF 538 (808)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y 538 (808)
|||+.|+++|+++||+||+|||+|.||+|+++++|+++|+||||+|||||+|+++|++|
T Consensus 470 ---------------------~d~~~l~~~v~~avr~LDnVID~~~yP~~~~~~~n~~~R~IGLGvmGlad~L~~lgi~Y 528 (758)
T PRK09103 470 ---------------------NSLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGVRY 528 (758)
T ss_pred ---------------------cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhcCccccchHHHHHHHHHcCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCC------CCcccHHHHHHHHHhcCC
Q 003602 539 DSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNP------SDRWDWGGLRDMISKNGV 612 (808)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~------~~~~dW~~Lr~~i~~~G~ 612 (808)
+|+||++|+++|||+|+|+|++||++||||+|+||.|++|+|++|+|+++.|...+ ...+||++||++|++||+
T Consensus 529 ~S~eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~~~~~~~~~~~dW~~Lr~~i~~~Gl 608 (758)
T PRK09103 529 SDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLDAICNEPLHYDWETLREEIKTHGL 608 (758)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhccccccccchhhHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999887542 235799999999999999
Q ss_pred ccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCC
Q 003602 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIP 692 (808)
Q Consensus 613 RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp 692 (808)
|||+++|||||||||+|+|+|+||||+|+++|+|++.+|.+..++|.+
T Consensus 609 RNs~l~AiaPTgS~S~i~g~s~giEP~~s~~~~k~~~~g~~~~~~p~~-------------------------------- 656 (758)
T PRK09103 609 RNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDY-------------------------------- 656 (758)
T ss_pred cccceeecCCcHHHHHHhCcCCCcCccccceeeeeccCceeeecCCCH--------------------------------
Confidence 999999999999999999999999999999999998888776555533
Q ss_pred hHHHhhhhchhcc-ChHHHHHHHHHhCCccccccceeEeeCC-------CChhHHHHHHHHHHHcCCceEEEEecCcccc
Q 003602 693 EELKAIYKTVWEI-KQKTLVDMAVDRGCYIDHSQSLNIHMDQ-------PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764 (808)
Q Consensus 693 ~~~k~~y~tA~ei-~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-------~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (808)
+++++.|+++|+| +|+++|+|+|+||||||||||+|||+++ ++.++|.++|++|||+|||| +||+|+++++
T Consensus 657 ~~~~~~y~~~~~i~~~~~~I~~~A~rQ~~VDQsqS~nl~~~~~~~~~~~~t~~~l~~~~~~Aw~~GlKT-~YY~rs~~~~ 735 (758)
T PRK09103 657 ERLKDAYELLWEMPNNDGYLQLVGIMQKFVDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT-LYYHNTRDGA 735 (758)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHhhhcchhhcceeeecccccccCCCCHHHHHHHHHHHHHhCCce-EeecCchhhh
Confidence 3456678999999 5899999999999999999999999842 47899999999999999999 8999999999
Q ss_pred cccccccccc
Q 003602 765 DAIKFTVDTS 774 (808)
Q Consensus 765 ~~~~~~~~~~ 774 (808)
+++|||+..+
T Consensus 736 ~~~~~~~~~~ 745 (758)
T PRK09103 736 EDAQDDLQPS 745 (758)
T ss_pred hhhhhhcccc
Confidence 9999998765
No 10
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.8e-183 Score=1611.58 Aligned_cols=695 Identities=33% Similarity=0.520 Sum_probs=646.9
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCC--CCCHHHHHHHHHHHHHhhc-cCCCChHHHH
Q 003602 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYK--GVTTSQLDELAAETAAAMT-TNHPDYASLA 78 (808)
Q Consensus 2 ~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~--~itt~ei~~~~~~~a~~~~-~~~p~y~~~A 78 (808)
+|+||||++|+|+++||+++|+++|+|++ .+|+..++.++..++++ ||||+||+++++++|++++ ..||||+.||
T Consensus 11 ~v~~~~g~~~~~~~~ki~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~a~~~~~~~~p~y~~~A 88 (761)
T PRK09209 11 IVKEAGNRKLPFDKERLDRYIDQIHAEFP--QLDVEDYKRRVFNFVERKESVTADDLVDYLIREAEARVDLEEPEWTFFA 88 (761)
T ss_pred EEEccCCccccCCHHHHHHHHHHHhCCCC--ccCHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccccCccHHHHH
Confidence 68999999999999999999999999986 49999999999999975 9999999999999998766 5899999999
Q ss_pred HHHHHHHHHHHhhhhhh-H---HHHHHHHhhhhccCCcccCcchhHHH-HHHHhHHHHhhhhcccccCCCChhhHHHHHH
Q 003602 79 ARIVVSNLHKNTKKSFS-E---TIKDMYNHYNERSGLKAPLIADDVYD-IIMKNAARLDSEIIYDRDFDYDYFGFKTLER 153 (808)
Q Consensus 79 ~rl~~~~l~k~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~ 153 (808)
|||++.+|||++.+.+. . ....+++++. .++..+++++++++ |+.+++++|+++|+++||+.|+|+|+++|++
T Consensus 89 arl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~ 166 (761)
T PRK09209 89 ARLYLNRLYKRASRNRFYDASEKYGSFVGLQE--SLAERGIYSNDLLKRYSKEELIEAGKMIDPERDKLFTYIGLYLLAD 166 (761)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhHHHHHH--HHHhcCcccHHHHHhcCHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Confidence 99999999999965420 0 0112222221 24456789999987 7799999999999999999999999999999
Q ss_pred hhcccc-CCcccCCHHHHHHHHHhhhccC-----ChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCC
Q 003602 154 SYLLKV-QGKVVERPQHMLMRVAVGIHKD-----DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDS 227 (808)
Q Consensus 154 ~Yllk~-~g~~~E~pq~~~~RvA~~l~~~-----~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS 227 (808)
+||+|. +|+++|+||++|||||+++|.. +++++++||++||+++|+||||||+|||++++|||||||+++ +||
T Consensus 167 rYllk~~~~~~~E~pq~~~mrVA~~la~~e~~~~r~~~~~~fY~~Ls~~~~~~aTPtl~NaGt~~~qlsSCFl~~v-~Ds 245 (761)
T PRK09209 167 RYLATDSDRNVYELPQERWLTIALYLMQNEPRERRMQLVKEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTV-DDS 245 (761)
T ss_pred hhCCcCCCCCEEECHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHcCcccCCCHHHhcCCCCCCCeeeeEeCCc-ccc
Confidence 999994 5889999999999999999964 367899999999999999999999999999999999999997 899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCccc
Q 003602 228 IEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHAD 307 (808)
Q Consensus 228 ~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~D 307 (808)
++|||++++++|++||.|||||+|+|+|||+|++|+|++|+|+|+|||||+||+++++|+||| +|+||+|+||++||||
T Consensus 246 l~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~n~~~~~v~QgG-~RrGA~avyL~~wHpD 324 (761)
T PRK09209 246 LQGIYDSNTDVARVSKHGGGVGAYLGKVRSRGSDIRGFKGVSSGVIPWIKQLNNTAVSVDQLG-QRKGAIAVYLDVWHKD 324 (761)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecccccCCCCCcccCCCCCCcCHHHHHHHHHHHHHHHHcCC-ccCCceeEEEeCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCC-----Cchhhhch-----HHHHHHHHHHHc
Q 003602 308 IFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAP-----GLADCWGT-----EFERLYTKYEKE 377 (808)
Q Consensus 308 I~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~-----~L~~~yg~-----eF~~~Y~~~e~~ 377 (808)
|++||++|+++|+++.|++++|+||||||+||+||++|++|+||||+++| +|.++||+ +|+++|++|+++
T Consensus 325 I~~FL~~K~~~gde~~R~~~l~~~v~ipD~FM~~V~~d~~w~Lf~P~~~~~~~g~~L~d~yg~~~~~g~f~~~Y~~~~~~ 404 (761)
T PRK09209 325 IESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFDPHEVKKVMGWYLEDFYDEKKGDGSFREKYEECVAD 404 (761)
T ss_pred HHHHHHhhcccccHHHhhhcchhhhccCHHHHHHHHCCCCEEEECccccccccCccHHHhhccccccchHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998 79999997 899999999985
Q ss_pred -CceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCc----------------
Q 003602 378 -GKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTE---------------- 440 (808)
Q Consensus 378 -~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e---------------- 440 (808)
++.+++|+||+||++|++++|+||+|||+|+|+|||+||++|.|+|++||||+||+||++|++
T Consensus 405 ~~~~~~~v~Ar~Lw~~I~~s~~eTG~Pyi~f~D~~N~~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~~~ 484 (761)
T PRK09209 405 ERLSRKTVKAIDIMKRIMVSQLETGNPFMFYRDEVNRMNPNKHEGMIYSSNLCTEIMQNMSPTVMIQEIISGGQIVITKQ 484 (761)
T ss_pred cCceeeeecHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCcccCCeeEeecCCcccccCCCccccccccccccccccccc
Confidence 667899999999999999999999999999999999999999999999999999999988743
Q ss_pred ---ceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhcc
Q 003602 441 ---TAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRH 517 (808)
Q Consensus 441 ---~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~ 517 (808)
+++|||+||||++|+.+ +.|+++|+++||+||+|||+|.||+|+++++|+++
T Consensus 485 ~g~~~vCNL~SiNL~~~v~~-------------------------~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~ 539 (761)
T PRK09209 485 PGDFVVCNLSSINLGRAVTA-------------------------DVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKY 539 (761)
T ss_pred cCCceEEEChHHHHHHHhch-------------------------HHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHhc
Confidence 68999999999999853 68999999999999999999999999999999999
Q ss_pred CCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCc
Q 003602 518 RPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDR 597 (808)
Q Consensus 518 R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~ 597 (808)
|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|++ |+.|+.. .
T Consensus 540 R~IGLGv~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~g~~-~~~~~~~---~ 615 (761)
T PRK09209 540 RAIGLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDWQTGEY-FERRGYN---S 615 (761)
T ss_pred cccccchhhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhhcCCc---h
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 6776654 3
Q ss_pred ccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhh
Q 003602 598 WDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNK 677 (808)
Q Consensus 598 ~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~ 677 (808)
.+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|+..+|++.+
T Consensus 616 ~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s~~y~r~~~~~~~~~---------------------- 673 (761)
T PRK09209 616 PQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPV---------------------- 673 (761)
T ss_pred hhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchhhHhhhhhccceeec----------------------
Confidence 5899999999999999999999999999999999999999999999999876665543
Q ss_pred hhccCCcccccCCCChHHHhhh-hchhccChHHHHHHHHHhCCccccccceeEeeCCC-ChhHHHHHHHHHHHcCCceEE
Q 003602 678 IIYDDGSVQKIPQIPEELKAIY-KTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQP-NFGKLTSLHFHAWLRGLKTGM 755 (808)
Q Consensus 678 i~~~~Gsv~~i~~lp~~~k~~y-~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~~-~~~~l~~~~~~Awk~GlKt~~ 755 (808)
.+|.+|++++++| +|||||+|+++|+|+|+||||||||||+|||++++ +.++|.++|++|||+|||| +
T Consensus 674 ---------~~p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~IDQsiS~nl~~~~~~~~~~l~~~y~~Awk~GlKt-~ 743 (761)
T PRK09209 674 ---------TAPDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-T 743 (761)
T ss_pred ---------cCCCCChhHHHHHhhhHhhCCHHHHHHHHHHHcccccccccCceeCCCCCCHHHHHHHHHHHHHhCCCe-E
Confidence 3567888999999 99999999999999999999999999999999975 5899999999999999999 8
Q ss_pred EEecCccc
Q 003602 756 YYLRSRAA 763 (808)
Q Consensus 756 YY~r~~~~ 763 (808)
||+||++.
T Consensus 744 YY~Rt~~~ 751 (761)
T PRK09209 744 YYVRSTDI 751 (761)
T ss_pred EEeeccCc
Confidence 99999654
No 11
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=2.7e-178 Score=1588.43 Aligned_cols=665 Identities=34% Similarity=0.542 Sum_probs=615.2
Q ss_pred cCHHhHHHHHHhhcCCCCCHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHhhhhccCC
Q 003602 34 CDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTN-HPDYASLAARIVVSNLHKNTKKSFSET-IKDMYNHYNERSGL 111 (808)
Q Consensus 34 v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~-~p~y~~~A~rl~~~~l~k~~~~~~~~~-~~~~~~~~~~~~~~ 111 (808)
+|+.+|..++..++++||||+||++++|++|++|++. ||||++|||||++.+|||++...+.+. +..++.++. .+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~Aarl~~~~l~k~~~~~~~~~~~~~~~~~~~--~~~ 203 (842)
T PRK12364 126 YSLDLLAEKFLSFCKPNMSEGESLAALIKAAVELTTQEAPDWEFIAARLLMLQFSKKLGKSLEKLGIHSFYDKIK--YLT 203 (842)
T ss_pred CCHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH--HHH
Confidence 3566778888888899999999999999999999997 699999999999999999986422210 112222221 244
Q ss_pred cccCcchhHHH-HHHHhHHHHhhhhcccccCCCChhhHHHHHHhhcccc-CCcccCCHHHHHHHHHhhhcc----CChHH
Q 003602 112 KAPLIADDVYD-IIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QGKVVERPQHMLMRVAVGIHK----DDIDS 185 (808)
Q Consensus 112 ~~~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk~-~g~~~E~pq~~~~RvA~~l~~----~~~~~ 185 (808)
..+++++++++ ++.+++++|+++|+++||+.|+|+|+++|+++||+|. +|+++|+||++|||||+++|. +++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~rYllk~~~~~~~E~pq~~~~rvA~~la~~e~~~~~~~ 283 (842)
T PRK12364 204 EEGLYGSYILEHYSREEIEEAAGFIDPERDKLFTYSGLDLLLKRYVIRTHSHEPLESPQEMFLGIALHLAMPEKQDRMGW 283 (842)
T ss_pred hcCchhHHHHHHhcHHHHHHHHHHhccccccCCCHHHHHHHHHhhCCcCCCCCeeeCHHHHHHHHHHHHHhhcccccHHH
Confidence 45789999987 7799999999999999999999999999999999994 588899999999999999995 46689
Q ss_pred HHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCC
Q 003602 186 AIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGT 265 (808)
Q Consensus 186 ~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~ 265 (808)
+++||++||+++|+||||||+||||+++|||||||+++ +||++|||++++++|+++|.|||||+|+|+|||+||+|+|+
T Consensus 284 ~~~fy~~ls~~~~~~aTPtl~Nagt~~~qlsSCFl~~v-~Dsl~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~ 362 (842)
T PRK12364 284 VKRFYDMLSKLKVTMATPTLSNARKPFHQLSSCFIDTV-PDSLDGIYRSIDNFAQVSKFGGGMGLYFGKVRAVGSNIRGF 362 (842)
T ss_pred HHHHHHHHHcCCcccCCHHHhcCCCCCCCeeeeEeCCC-CccHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCcccCc
Confidence 99999999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred CCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcC
Q 003602 266 NGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSN 345 (808)
Q Consensus 266 ~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~ 345 (808)
+|+|+|||||||+||+++.+|+||| +||||+|+||++|||||++||++|+++|+++.|++++|+||||||+||+||++|
T Consensus 363 ~g~ssG~vp~lk~~~~~~~~v~QgG-~RrGA~~vyL~~wH~DI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~ 441 (842)
T PRK12364 363 QGVAGGVIRWIKLANDTAVAVDQLG-MRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDD 441 (842)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhCC-cCCCceeEEEeCCCccHHHHHHHhccCCchhhhhhhcchhheeCHHHHHHHHhC
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999986
Q ss_pred --CcEEEecCCCCC-----CchhhhchHHHHHHHHHHHcC-ceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCC
Q 003602 346 --GLWSLFCPNEAP-----GLADCWGTEFERLYTKYEKEG-KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQ 417 (808)
Q Consensus 346 --~~w~Lf~P~~~~-----~L~~~yg~eF~~~Y~~~e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~ 417 (808)
++|+||+|+++| +|.+.||++|+++|.+|++++ +.+++|+||+||++|++++|+||+|||+|+|+||++||+
T Consensus 442 ~~~~w~Lf~P~~~~~~~g~~l~~~yg~~f~~~Y~~~~~~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~ 521 (842)
T PRK12364 442 INQSWYLFCPHEILTVKGYALEDYYGEEWEKRYLDCVNDARISKRSIPIKDLVRLILKSAVETGTPFTFNRDTVNRANPN 521 (842)
T ss_pred CCCceEeecccccccccccchhhhcccHHHHHHHHHHhcccceeEEEEHHHHHHHHHHHHHHhCCCeeEehHHHhhcCCC
Confidence 899999999999 899999999999999999864 568999999999999999999999999999999999999
Q ss_pred CCCCceeeecCCcccccCCCC-----------------------CcceeeeccccChhhhhhhcCCCCCCCCCcccccCC
Q 003602 418 QNLGTIKSSNLCTEVIQYTSP-----------------------TETAVCNLASIALPRYVREMGVPMESHPSKLVGSRG 474 (808)
Q Consensus 418 ~~~G~I~~sNlC~EI~~~~~~-----------------------~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~ 474 (808)
+|.|+|++||||+||+|+++| +++++|||+||||++|+.
T Consensus 522 ~~~g~I~~SNlC~EI~q~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~CNL~SinL~~~~~------------------ 583 (842)
T PRK12364 522 KHKGMIYCSNLCTEIAQNMSAIETVSTEIETEDGDTVVVTTTRPGDFVVCNLASLSLGNIDL------------------ 583 (842)
T ss_pred CcCCeeEEecCcccccccCCccccccccccccccccccccccCCCCeeEEEcHHHHhhcccc------------------
Confidence 999999999999999998754 478999999999999852
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 003602 475 SKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETI 554 (808)
Q Consensus 475 ~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i 554 (808)
||++.|+++|+++||+||+|||.+.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|
T Consensus 584 -----~d~~~l~~~v~~~vr~LDnVID~~~yp~~~~~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~l~~~i~e~i 658 (842)
T PRK12364 584 -----EDEEELEEVVRTVVRALDNVIDLNFYPVPYAQITNKRYRSIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERI 658 (842)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhccccccchHHHHHHHHHCCCCcCCHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCc
Q 003602 555 YYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634 (808)
Q Consensus 555 ~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~ 634 (808)
+|+|++||++||+|+|+||.|++|+|++|.+ |+.|+.. ..+|++||++|++||+|||+++|||||+|||+|+|+|+
T Consensus 659 ~~~a~~aS~eLA~E~G~~~~f~~S~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~ 734 (842)
T PRK12364 659 NYAAIKASMEIAKEKGAYGYFEGSDWQTGAY-FRKRGYT---SEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTA 734 (842)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhccCcc---hhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCC
Confidence 9999999999999999999999999999997 7776543 35899999999999999999999999999999999999
Q ss_pred cccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcc--cccCCCChHHHhhhhchhccChHHHHH
Q 003602 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSV--QKIPQIPEELKAIYKTVWEIKQKTLVD 712 (808)
Q Consensus 635 gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv--~~i~~lp~~~k~~y~tA~ei~~~~~i~ 712 (808)
||||+|+++|.|.. .|++ +.+|.+|++.+++|+|||||+|+++|+
T Consensus 735 gieP~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~ 781 (842)
T PRK12364 735 GVDPVMKRYFLEEK---------------------------------KGALMPRVAPELSDKTFWLYKNAHLIDQKWSIR 781 (842)
T ss_pred ccCcchHhHHHHhh---------------------------------cCCcccccCccCCHHHHHHhccHhcCCHHHHHH
Confidence 99999998776531 1222 336889999999999999999999999
Q ss_pred HHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCccc
Q 003602 713 MAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAA 763 (808)
Q Consensus 713 ~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~ 763 (808)
|+|+||||||||||+|||+++ ++.++|.++|++|||+|||| +||+|+++.
T Consensus 782 ~~A~~Q~~IDqsiS~nl~~~~~~t~~~l~~~y~~Awk~GlKt-~yy~R~~~~ 832 (842)
T PRK12364 782 AAGVRQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-IYYVRSKSL 832 (842)
T ss_pred HHHHHhccchhhccCceecCCCCCHHHHHHHHHHHHHcCCCE-EEEEccCCc
Confidence 999999999999999999997 69999999999999999999 899999655
No 12
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2e-160 Score=1406.32 Aligned_cols=624 Identities=25% Similarity=0.411 Sum_probs=565.2
Q ss_pred CCChHHHHHHHHHHHHHH-Hh--hhhhhHHHHHHHHhhhhccCCcccCcchhHHH-HHHHhHHHHhhhhcccccCCCChh
Q 003602 71 HPDYASLAARIVVSNLHK-NT--KKSFSETIKDMYNHYNERSGLKAPLIADDVYD-IIMKNAARLDSEIIYDRDFDYDYF 146 (808)
Q Consensus 71 ~p~y~~~A~rl~~~~l~k-~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~~y~ 146 (808)
.-+.+.+|+|+++..++| ++ +++|.+.+..|.+ .++|++++++ |..++++++.+.++..||..|+|+
T Consensus 25 ~~~~d~~A~~~~~~~~~~~~~~~~~~~~~~~~~lv~---------~~~y~~~~~~~y~~~~l~~~~~~~~~~~~~~~~y~ 95 (721)
T PRK07187 25 HFDSDKEAVERYLEEHVEPNQKKFNSLEEKLAYLVN---------NGYYEQEILDAYSFDQIEELFHYAYQYNHRFLSFM 95 (721)
T ss_pred cccchHHHHHHHHHHHhhhccccccCHHHHHHHHHH---------cChhhHHHHhhCCHHHHHHHHhHhhhccccccchH
Confidence 337889999999999999 57 5666554444422 3478888875 777788888888888888788899
Q ss_pred hHHHHHHhhcccc-CCc-ccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecccccccccCCC-CCcccccccccc
Q 003602 147 GFKTLERSYLLKV-QGK-VVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTP-RAQLSSCFLVCM 223 (808)
Q Consensus 147 g~~~l~~~Yllk~-~g~-~~E~pq~~~~RvA~~l~~~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~-~~~lsSCfl~~~ 223 (808)
|+++|+++||+|. +|+ ++|+||+++||||++++.++.+.+++||+.|+.++|+||||||+|||++ ++|||||||+++
T Consensus 96 g~~~l~~rYllk~~~~~~~~E~pq~~~~~~Al~l~~~~~~~~~~~y~~~~~~~f~paTPtl~NaG~~~~~qlsSCFl~~v 175 (721)
T PRK07187 96 GAMKFYNSYALKTFDGKQYLETFEDRAVMNALFLADGDFTKAFDLLDQILLGRFQPATPTFLNAGKKRRGEYISCYLLRV 175 (721)
T ss_pred HHHHHHHhhccccCCCCeeeeCHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCcccCCcccccCCCCCCCCcCceEeccC
Confidence 9999999999995 455 4899999999999999988888999999999999999999999999998 699999999997
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccC
Q 003602 224 KDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEP 303 (808)
Q Consensus 224 ~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~ 303 (808)
+||++||+++++++|++||.|||||+|+|+|||+||+|+|++|.|+|||||||+||+++.+|+||| +||||+|+||++
T Consensus 176 -~Dsl~sI~~~~~~~a~isK~GGGiG~~~s~lR~~Gs~I~g~~g~ssGvvp~mk~~~~~~~~v~QgG-~RrGA~~vyL~~ 253 (721)
T PRK07187 176 -EDNMESISRAISTSLQLSKRGGGVALCLTNLREIGAPIKGIENQATGIIPVMKLLEDSFSYANQLG-QRQGAGAVYLHA 253 (721)
T ss_pred -CCCHHHHHHHHHHHHHHHhhCCeeeeeccccCCCCCcccCCCCCCCChHhHHHHHHHHHHHHHcCC-cccCceEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred CcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHH-----HHHHHHHcC
Q 003602 304 WHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFER-----LYTKYEKEG 378 (808)
Q Consensus 304 wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~-----~Y~~~e~~~ 378 (808)
|||||++||++|+++|+++.|++++++||||||+|||+|++|++|+||||+++ .++||++|++ .|.++++++
T Consensus 254 wHpDI~eFL~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~yg~~~~~~~~~~~Y~~~~~~~ 330 (721)
T PRK07187 254 HHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMALFSPYDI---KREYGKPMSDISITEEYYNLLANP 330 (721)
T ss_pred CCccHHHHHHHhccccchhhhhccchHHhcccHHHHHHHHcCCCeEeECcchh---hHhhCcchhhhhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999985 6899986654 588887754
Q ss_pred -ceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCc------------ceeee
Q 003602 379 -KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTE------------TAVCN 445 (808)
Q Consensus 379 -~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e------------~~~CN 445 (808)
+.+++|+||+||++|+++||+||+|||+|+|+|||+||++|.|+|++||||+||+|+++|++ +++||
T Consensus 331 ~i~k~~V~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~~~~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CN 410 (721)
T PRK07187 331 AIKKTYISARKLFQTIAELHFESGYPYLLFDDTVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFNEDLSFKKIGEDICCN 410 (721)
T ss_pred ccceeEecHHHHHHHHHHHHHHHCCCeEEEhHHHhhcCCcccCCceeeccccccccccCCchhcccccccccCCCcceee
Confidence 45678999999999999999999999999999999999999999999999999999998864 68999
Q ss_pred ccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCceeec
Q 003602 446 LASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYY-PVETARRSNLRHRPIGIGV 524 (808)
Q Consensus 446 L~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~y-p~~~~~~~~~~~R~iGlGv 524 (808)
||||||++|+.+ .+.|+++|+++||+||+|||.+.+ |+|+++++|+++|+||||+
T Consensus 411 LgSiNL~~~v~~------------------------~~~~~~~v~~avR~LDnVId~~d~~~~p~~~~~n~~~R~IGLGv 466 (721)
T PRK07187 411 LGSLNIAKAMES------------------------GPEFEQLIYTSIRALDRVSRVSDLSCAPSIEKGNAANHAVGLGA 466 (721)
T ss_pred CHHHHHHHHhcc------------------------hhhHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhcCcccchH
Confidence 999999999853 156789999999999999999865 7899999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccc--------cCC----
Q 003602 525 QGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDM--------WGV---- 592 (808)
Q Consensus 525 ~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~--------~~~---- 592 (808)
|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.+ |+. |..
T Consensus 467 mGlad~La~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~-~~~~~~~~~~~~~~~~~~ 545 (721)
T PRK07187 467 MNLHGFLATNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSY-FDKYTKEDAKKWTPKTAK 545 (721)
T ss_pred HHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccch-hhhhhhccccccCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999987 333 321
Q ss_pred ----------CCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHH
Q 003602 593 ----------NPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLH 662 (808)
Q Consensus 593 ----------~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~ 662 (808)
..+..++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|+..++....
T Consensus 546 ~~~~~~~~~~~~~~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~~~~R~~~~~~~~~------- 618 (721)
T PRK07187 546 VKELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRKEGKLGRIY------- 618 (721)
T ss_pred hhhhhhhccccccchhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhhhheeeccCCceEE-------
Confidence 112367899999999999999999999999999999999999999999999999864432211
Q ss_pred HHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhh-hchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHH
Q 003602 663 DLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIY-KTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLT 740 (808)
Q Consensus 663 ~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y-~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~ 740 (808)
...|.+|++.+++| +|||||+|+++|+|+|++|||||||||+|||+++ ++.++|.
T Consensus 619 -----------------------~~~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~IDqsiS~tl~~~~~~t~~dl~ 675 (721)
T PRK07187 619 -----------------------VPAYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHVDQAISLTLFMTDQATTRDLN 675 (721)
T ss_pred -----------------------cccccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhccccccceeeCCCCCCHHHHH
Confidence 12345778888899 9999999999999999999999999999999996 6899999
Q ss_pred HHHHHHHHcCCceEEEEecCcccc
Q 003602 741 SLHFHAWLRGLKTGMYYLRSRAAA 764 (808)
Q Consensus 741 ~~~~~Awk~GlKt~~YY~r~~~~~ 764 (808)
++|++|||+|||| +||+|+++..
T Consensus 676 ~~y~~Awk~GlKt-~YY~Rt~~~~ 698 (721)
T PRK07187 676 KAYIQAFKQKCAS-IYYVRVRQDV 698 (721)
T ss_pred HHHHHHHHcCCCE-EEEEeehhhh
Confidence 9999999999999 9999996555
No 13
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.8e-159 Score=1394.48 Aligned_cols=575 Identities=26% Similarity=0.440 Sum_probs=532.6
Q ss_pred hHHHHhhhhcccccCCC---ChhhHHHHHHhhccccCC--cccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecc
Q 003602 127 NAARLDSEIIYDRDFDY---DYFGFKTLERSYLLKVQG--KVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHA 201 (808)
Q Consensus 127 ~~~~l~~~i~~~rD~~~---~y~g~~~l~~~Yllk~~g--~~~E~pq~~~~RvA~~l~~~~~~~~~~~Y~~ls~~~~~~a 201 (808)
+.++|++++++.||+.| +|+|+++|+++||+|.++ .++|+||++|||||++||.++.++|++||++||+++|+||
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~Y~lk~~~~~~~~E~~q~~~~~vAl~l~~~~~~~a~~~y~~ls~~~f~pa 151 (699)
T PRK07632 72 SEEDLIEVTDYAYSIKFNFASYMSASKFYKDYALKTNDKKQYLEDYEDHVAIVALYLANGDKAKAKQFISAMVEQRYQPA 151 (699)
T ss_pred CHHHHHHHHhHHhhccccccchhHHHHHHhhhccccCCCCeEEeCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCeecC
Confidence 45556666655555554 688999999999999543 4789999999999999999999999999999999999999
Q ss_pred cccccccCCC-CCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHH
Q 003602 202 SPTLFNAGTP-RAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFN 280 (808)
Q Consensus 202 tPtl~naGt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~ 280 (808)
||||+|||++ ++|||||||+.+ +||++||++++++++++||.|||||+|+|+|||+|++|+|++|.|+|||||||+||
T Consensus 152 TPtl~NaG~~~~~qlsSCFl~~v-~Dsl~sI~~~~~~~a~lsK~GGGvG~~~s~lR~~Gs~I~g~~g~ssGvvp~mk~~d 230 (699)
T PRK07632 152 TPTFLNAGRARRGELVSCFLLEV-DDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGAAKGVLPVAKLLE 230 (699)
T ss_pred CCcccCCCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCcccCCCCCCCCHHHHHHHHH
Confidence 9999999997 699999999997 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCch
Q 003602 281 DTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLA 360 (808)
Q Consensus 281 ~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~ 360 (808)
+++.+++||| +||||+|+||++|||||++||++|+++|+++.|++++|+||||||+|||+|++|++|+||+|+++ .
T Consensus 231 ~~~~~v~QgG-~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~r~~~l~~~v~ipD~Fme~v~~d~~w~Lf~P~~~---~ 306 (699)
T PRK07632 231 GGFSYADQLG-QRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYMFAPHTV---Y 306 (699)
T ss_pred HHHHHHHhcC-ccccceeEEEeCCCccHHHHHHHhccccchhhHHHhcchhheecHHHHHHHHcCCCeEEECCccc---h
Confidence 9999999998 89999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred hhhch-----HHHHHHHHHHHcC-ceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCccccc
Q 003602 361 DCWGT-----EFERLYTKYEKEG-KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQ 434 (808)
Q Consensus 361 ~~yg~-----eF~~~Y~~~e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~ 434 (808)
+.||+ +|++.|+++++++ +.+++|+||+||++|+++|||||+|||+|+|+||++||++|.|+|++||||+||+|
T Consensus 307 ~~yG~~~~~~~~~~~Y~~~~~~~~i~~~~I~AreL~~~I~~~~~etG~Pyi~f~D~~N~~np~~~~G~I~~SNlC~EI~~ 386 (699)
T PRK07632 307 KEYGVTLDDIDLEEMYDDLVANPNVKKKKKNAREMLNKIAQTQLQSGYPYLMFKDNANKVHPNSNIGQIKMSNLCTEIFQ 386 (699)
T ss_pred hhcCcccccchHHHHHHHHHhcCCeeecccCHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCcEEecCCcccccc
Confidence 67776 7999999999875 45799999999999999999999999999999999999999999999999999999
Q ss_pred CCC---------CCcc---eeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 003602 435 YTS---------PTET---AVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDV 502 (808)
Q Consensus 435 ~~~---------~~e~---~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~ 502 (808)
++. ++++ ++||||||||++|+++ +.|+++|+++||+||+|||.
T Consensus 387 ~~~~s~~~~~~~~~~~g~~~~CNLgSiNL~~~v~~-------------------------~~l~~~v~~avr~LdnViD~ 441 (699)
T PRK07632 387 LQETSIINDYGIEDEIKRDISCNLGSLNIVNVMES-------------------------KKFRDSVHSGMDALTVVSDV 441 (699)
T ss_pred cCCccccccccccccccccceeecchhhHHHhccc-------------------------chHHHHHHHHHHHHHHHHHh
Confidence 752 2333 4999999999999853 57999999999999999999
Q ss_pred CCCC-HHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcC
Q 003602 503 NYYP-VETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREG-PYETYHGSPV 580 (808)
Q Consensus 503 ~~yp-~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G-~~~~f~~S~~ 580 (808)
+.|| +|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+| +||.|++|+|
T Consensus 442 ~~~p~~p~~~~~n~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~~f~~S~~ 521 (699)
T PRK07632 442 ANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDY 521 (699)
T ss_pred hcCCCCHHHHHHhhccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCcChh
Confidence 9997 9999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccCCCCccccCCC-----------------CCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccce
Q 003602 581 SKGILQPDMWGVN-----------------PSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 643 (808)
Q Consensus 581 ~~G~l~~d~~~~~-----------------~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~ 643 (808)
++|++ |+.|... .+..+||++|+++|++||+|||+++|||||||||+|+|+|+||||+++++
T Consensus 522 ~~G~~-f~~~~~~~~~~~~~~v~~~~~~~~~~~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~siePi~s~i 600 (699)
T PRK07632 522 ANGKY-FEKYTTQDFEPKFEKVRELFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQI 600 (699)
T ss_pred hccch-HhhhhhcccchhhhhhhhhhcccCCCchhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCccHHHHHHHH
Confidence 99997 7776421 12468999999999999999999999999999999999999999999998
Q ss_pred eeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCcccc
Q 003602 644 YSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDH 723 (808)
Q Consensus 644 y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQ 723 (808)
+.|... .+++++.+|.+|++.+++|+|||||+|+++|+|+|++||||||
T Consensus 601 ~~r~~~-------------------------------~~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDQ 649 (699)
T PRK07632 601 ERRTYG-------------------------------NAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQ 649 (699)
T ss_pred HhhhcC-------------------------------CCCceeeCccCCHHHHHHhccHhhCCHHHHHHHHHHHcccchh
Confidence 866421 2456678999999999999999999999999999999999999
Q ss_pred ccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCcccc
Q 003602 724 SQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764 (808)
Q Consensus 724 s~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (808)
|||+|||+++ .|.++|.++|++|||+|||| +||+|+++.+
T Consensus 650 siS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~Rt~~~~ 690 (699)
T PRK07632 650 GISTILYVNSEISTRELARLYVYAHHKGLKS-LYYTRNKLLS 690 (699)
T ss_pred hhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccc
Confidence 9999999997 59999999999999999999 9999996554
No 14
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=100.00 E-value=1.1e-154 Score=1356.61 Aligned_cols=595 Identities=48% Similarity=0.836 Sum_probs=570.6
Q ss_pred hhhHHHHHHhhcccc--CCcccCCHHHHHHHHHhhhcc-----CChHHHHHHHHHHhcCceecccccccccCCCCCcccc
Q 003602 145 YFGFKTLERSYLLKV--QGKVVERPQHMLMRVAVGIHK-----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSS 217 (808)
Q Consensus 145 y~g~~~l~~~Yllk~--~g~~~E~pq~~~~RvA~~l~~-----~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsS 217 (808)
|+|+++|+++|++|. +|+++|+||++|||||++++. .+.+++++||++|++++|+||||||+||||+++||+|
T Consensus 1 ~~g~~~l~~~Y~lk~~~~~~~~E~p~~~~~rvA~~~a~~e~~~~~~~~~~~fy~~l~~~~~~patp~l~naGt~~~~lss 80 (617)
T TIGR02506 1 YMGLKELYNRYLLRNAATGAIYESPQEAYMRVAMGLASLEPKDTRLADAIRFYDLLSRLKISPATPTLFNAGTPRGQLSS 80 (617)
T ss_pred CchHHHHHHhhceecCCCCCcccCHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHcCCeecCChhhhcCCCCCCCCcc
Confidence 789999999999983 357899999999999999985 2456899999999999999999999999999999999
Q ss_pred cccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccce
Q 003602 218 CFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAF 297 (808)
Q Consensus 218 Cfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~ 297 (808)
|||+.+.+||+++|+++++++++++|.|||||+|+|+|||+|++|+|++|.|+||||||++||+++.+|+||| +||||.
T Consensus 81 Cfv~~~~dds~~~I~~~~~~~a~l~k~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~f~~~~d~~~~~v~qgg-~Rrga~ 159 (617)
T TIGR02506 81 CFLLDVTDDTLESIYKAIDDVAQLSKHGGGIGLNLTKLRAIGSPIRGTNNASKGIIPFLKLLDSSVEAVNQGG-KRPGAA 159 (617)
T ss_pred eEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEecccccCCCCCccCCCCCCCCCceeHHHHHHHHHHHHhcCC-ccccce
Confidence 9999987899999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred EEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHc
Q 003602 298 AVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKE 377 (808)
Q Consensus 298 ~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~ 377 (808)
|+||++|||||++||++|+++|+++.|++++|+||+|||+|||||++|++|+||+|++++.|.++||++|++.|.+++++
T Consensus 160 ~~~l~~~HpDi~~Fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~d~~w~Lf~p~~~~~l~~~~~~~f~~~Y~~~~~~ 239 (617)
T TIGR02506 160 AVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFSPYDVPGLYGLYGEEFEEEYERLEKD 239 (617)
T ss_pred EEEEeCCCccHHHHHHhccccCchhhHHHhcchhhccCHHHHHHHHcCCCeEEECccccchhhhcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CceeE---EEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCC-CCCceeeecCCcccccCCCCC---cceeeeccccC
Q 003602 378 GKAKK---VVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQ-NLGTIKSSNLCTEVIQYTSPT---ETAVCNLASIA 450 (808)
Q Consensus 378 ~~~~~---~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~-~~G~I~~sNlC~EI~~~~~~~---e~~~CNL~SIn 450 (808)
+...+ +|+||+||++|++++|+||+|||+|+|++|+++|.+ +.|+|++||||+||+|++.++ ++++|||+|||
T Consensus 240 ~~~~~~~~~v~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~g~~~~CnL~SiN 319 (617)
T TIGR02506 240 VEARKKIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNPFKTGGGAIKMSNLCTEITQPTDDSHKGETAVCNLASVN 319 (617)
T ss_pred cccceeeeEeeHHHHHHHHHHHHHHHcCCceEecchhhhcCCcccCCceEEecCcCccccccCCcccCCceeEEEcHHHH
Confidence 65433 699999999999999999999999999999999987 778999999999999998776 89999999999
Q ss_pred hhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHH
Q 003602 451 LPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADT 530 (808)
Q Consensus 451 L~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~ 530 (808)
|.+|+.+ ..|||+.|+++|+++||+||+|||.+.||++++++.++++|+||||+|||||+
T Consensus 320 L~~fv~~--------------------~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlG~~Glad~ 379 (617)
T TIGR02506 320 LANFVME--------------------DKFDFSELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIGIGVMGLHDV 379 (617)
T ss_pred HHHHhcc--------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCccccchhHHHHH
Confidence 9999865 34999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCC-------CcccHHHH
Q 003602 531 FILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS-------DRWDWGGL 603 (808)
Q Consensus 531 L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~-------~~~dW~~L 603 (808)
|+++|++|+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|++|+++++.|...+. ...+|++|
T Consensus 380 L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~W~~L 459 (617)
T TIGR02506 380 LAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKTSMAPTEEDWEAL 459 (617)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhcccchhcccccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876542 46799999
Q ss_pred HHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCC
Q 003602 604 RDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDG 683 (808)
Q Consensus 604 r~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~G 683 (808)
+++|++||+|||+++|||||||+|+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|++++++++....|
T Consensus 460 ~~~i~~~GlRNs~l~aiaPTgs~S~i~g~S~gieP~~a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~~~g 539 (617)
T TIGR02506 460 RERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVG 539 (617)
T ss_pred HHHHHHhCccccceeccCChHHHHHHcCCCCccCcccchheeEecCCceEEEecHHHHHHHHHcCCCHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred cccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCc
Q 003602 684 SVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSR 761 (808)
Q Consensus 684 sv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~ 761 (808)
++|.++.+|++.+.+|+||+||+|+++|+|+|++|||||||||+|||+++ .+.++|.++|++|||+|||| |||||++
T Consensus 540 ~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~-~YY~r~~ 617 (617)
T TIGR02506 540 SPQPIAAIPETLKYKYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MYYCRSR 617 (617)
T ss_pred CccCCCCCChhHHHHhchHhcCCHHHHHHHHHHHhcccccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEeecC
Confidence 99999999999999999999999999999999999999999999999997 79999999999999999999 9999985
No 15
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.3e-154 Score=1353.91 Aligned_cols=587 Identities=27% Similarity=0.457 Sum_probs=544.0
Q ss_pred cCcchhHHH-HHHHhHHHHhhhhcccccCCCChhhHHHHHHhhcccc-CCc-ccCCHHHHHHHHHhhhccCChHHHHHHH
Q 003602 114 PLIADDVYD-IIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QGK-VVERPQHMLMRVAVGIHKDDIDSAIKTY 190 (808)
Q Consensus 114 ~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk~-~g~-~~E~pq~~~~RvA~~l~~~~~~~~~~~Y 190 (808)
+++++++++ |..+++++|.+.|+.+||..|+|+|+++|+++|++|. +|+ .+|+||+++|+||++++..+.++|++||
T Consensus 70 ~~y~~~~~~~y~~~~i~~l~~~i~~~~~~~~~y~ga~~~~~~Y~lk~~~~~~~~E~~~~r~~~vA~~la~~~~~~a~~~y 149 (714)
T PRK08188 70 GYYEEEVLDQYSRNFVKTLFDHAYAKKFRFQTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLAQGDETLARQLV 149 (714)
T ss_pred cchhHHHHHhcCHHHHHHHHHHhhhccccccCcHhHHHHHHhhceecCCCCEEecCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 467777775 7888999999999999999999999999999999994 565 4899999999999999998888999999
Q ss_pred HHHhcCceecccccccccCCC-CCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcc
Q 003602 191 HMMSQRWFTHASPTLFNAGTP-RAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTS 269 (808)
Q Consensus 191 ~~ls~~~~~~atPtl~naGt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~s 269 (808)
++|++++|+||||||+|||++ ++||+||||+.+ +||++||++++++++++||.|||||+|+|+|||+|++|+|++|.|
T Consensus 150 ~~l~~~~f~paTPtl~NaG~~~~g~lsSCFl~~v-~DslesI~~~~~~~~~lsK~GGGVG~~ls~lR~~Gs~Ikg~~g~s 228 (714)
T PRK08188 150 DEIISGRFQPATPTFLNCGKKQRGELVSCFLLRI-EDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKRIENQS 228 (714)
T ss_pred HHHHcCCEecCCcceecCCCCCCCcceeEEecCC-CCCHHHHHHHHHHHHHHHhhCCeEEEeccccCCCCCcccCCCCCC
Confidence 999999999999999999998 999999999997 899999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEE
Q 003602 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWS 349 (808)
Q Consensus 270 sG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~ 349 (808)
+|||||||+||+++.+++||| +|+||.|+||++|||||++||++|+++|+|..|++++++||||||+||++|++|++|+
T Consensus 229 sGvvp~mkl~d~~~~~v~Q~G-~R~GA~avyL~~~HpDI~~FL~~K~~~gde~~R~~~l~~gV~ipD~Fme~v~~~~~~~ 307 (714)
T PRK08188 229 SGVIPVMKLLEDAFSYANQLG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDMY 307 (714)
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CCCCceeEEecCCCchHHHHHHHhhcccchhhhhhhchHHhccCHHHHHHHHcCCCeE
Confidence 999999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCchhhhchHHH-----HHHHHHHHcC-ceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCce
Q 003602 350 LFCPNEAPGLADCWGTEFE-----RLYTKYEKEG-KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTI 423 (808)
Q Consensus 350 Lf~P~~~~~L~~~yg~eF~-----~~Y~~~e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I 423 (808)
||+|+++ .++||++|+ +.|+++++++ +.+++|+||+||++|+++|||||+|||+|+|++||+||++ |+|
T Consensus 308 Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~v~~~~i~k~~I~Arel~~~I~~~~~etG~Pyi~f~D~vNr~np~~--G~I 382 (714)
T PRK08188 308 LFSPYDV---ERVYGKPFADISVTEKYDEMVADERIRKKKINAREFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRI 382 (714)
T ss_pred eeCcchh---hhhhcccccchhHHHHHHHHHhCCcceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCCC--Cce
Confidence 9999975 688999885 6688888764 4578999999999999999999999999999999999986 999
Q ss_pred eeecCCcccccCCCCC------------cceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 003602 424 KSSNLCTEVIQYTSPT------------ETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGI 491 (808)
Q Consensus 424 ~~sNlC~EI~~~~~~~------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~ 491 (808)
.+||||+||+|+++|+ +.++|||+||||++|+ |++.|+++|++
T Consensus 383 ~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~sCNLgSiNL~~~~-------------------------d~~~l~~~v~~ 437 (714)
T PRK08188 383 NMSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGSLNIAHTM-------------------------DSPDFGRTVET 437 (714)
T ss_pred eeecccccccccCChhhhccccccccCCCcceEEChhhhHHHhc-------------------------CHHHHHHHHHH
Confidence 9999999999998774 3479999999999986 45889999999
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 003602 492 VTENLNKIIDVNY-YPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREG 570 (808)
Q Consensus 492 avr~Ld~vId~~~-yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G 570 (808)
+||+||+|||++. +|+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+|
T Consensus 438 avR~LD~ViD~~~~~p~p~~~~~n~~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkErG 517 (714)
T PRK08188 438 AIRALTAVSDMSHIRSVPSIEKGNAASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERG 517 (714)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHhcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999997 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCCCCcCccCCCCccc-----cCC--------------CCCCcccHHHHHHHHHhcCCccccccccCCCcchhhcc
Q 003602 571 -PYETYHGSPVSKGILQPDM-----WGV--------------NPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQIL 630 (808)
Q Consensus 571 -~~~~f~~S~~~~G~l~~d~-----~~~--------------~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~ 630 (808)
+||.|++|+|++|.+ |+. |.. ..+...+|++|+++|++||+|||+++|||||+|||+|+
T Consensus 518 ~~f~~f~~S~~~~G~~-f~~y~~~~~~~~~~~v~~~~~~~~~~~p~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i~ 596 (714)
T PRK08188 518 ETFAGFEQSKYASGEY-FDKYTQQDWQPKTAKVRELFARAGITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYIN 596 (714)
T ss_pred CCCCCcccChhhccch-hhhcchhccCcchhhhhhhhhhcccCCCcHHhHHHHHHHHHHhCcccceeeeeCCcchHHHHc
Confidence 599999999999998 443 321 11245789999999999999999999999999999999
Q ss_pred CCCccccccccceeeEEcc-cCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHH
Q 003602 631 GNNECFEPYTSNIYSRRVL-SGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKT 709 (808)
Q Consensus 631 G~s~gieP~~s~~y~R~~~-~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~ 709 (808)
|+|+||||+++++|.|+.. .|++..++ |.++++.+++|+|||||+|++
T Consensus 597 ~~T~sIePi~s~v~~R~~~~~g~~~~~~-------------------------------p~l~~~~~~~y~tA~ei~~~~ 645 (714)
T PRK08188 597 HSTSSIHPIVSKIEIRKEGKIGRVYYPA-------------------------------PYMTNDNLEYYQDAYEIGPEK 645 (714)
T ss_pred CCCCCcCcchhhheeeeccccceEEeeC-------------------------------cccchhhHhHhCcHHhCCHHH
Confidence 9999999999999999853 35555443 445566778999999999999
Q ss_pred HHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCccccc
Q 003602 710 LVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAAD 765 (808)
Q Consensus 710 ~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~ 765 (808)
+|+|+|++|||||||||+|||+++ .+.++|.++|++|||+|||| +||+|+++.+.
T Consensus 646 ~I~~~A~~Qk~VDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~R~~~~~~ 701 (714)
T PRK08188 646 IIDTYAAATQHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMAL 701 (714)
T ss_pred HHHHHHHHcccchhhhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEEeeccccc
Confidence 999999999999999999999996 58999999999999999999 89999976654
No 16
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.1e-153 Score=1351.36 Aligned_cols=585 Identities=26% Similarity=0.448 Sum_probs=540.9
Q ss_pred cCcchhHHH-HHHHhHHHHhhhhcccccCCC-ChhhHHHHHHhhccc-cCCcc-cCCHHHHHHHHHhhhccCChHHHHHH
Q 003602 114 PLIADDVYD-IIMKNAARLDSEIIYDRDFDY-DYFGFKTLERSYLLK-VQGKV-VERPQHMLMRVAVGIHKDDIDSAIKT 189 (808)
Q Consensus 114 ~l~~~~~~~-~~~~~~~~l~~~i~~~rD~~~-~y~g~~~l~~~Yllk-~~g~~-~E~pq~~~~RvA~~l~~~~~~~~~~~ 189 (808)
++|++++++ |+.+++++|.++|++ ||+.| +|+|+++|+++|++| .+|+. +|+||+++|++|++++..+.+++++|
T Consensus 64 ~~y~~~~~~~y~~~~i~~l~~~i~~-~~~~f~~~~ga~~~~~rY~lk~~~g~~~~E~~~~Rv~~~A~~la~~~~~~a~~~ 142 (720)
T PRK07306 64 DYIESAFIKKYRPEFIEKLYQFLKA-QNFRFKSFMAAYKFYNQYALKTNDGEYYLENFEDRVLFNALYFADGDEDLAKDL 142 (720)
T ss_pred ChhHHHHHhhCCHHHHHHHHHHHhh-ccCcCcCHHHHHHHHHHhCccCCCCCEeccCHHHHHHHHHHHHccCCHHHHHHH
Confidence 478888876 788999999999997 89998 999999999999999 45665 79999999999999998888999999
Q ss_pred HHHHhcCceecccccccccCCC-CCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCc
Q 003602 190 YHMMSQRWFTHASPTLFNAGTP-RAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGT 268 (808)
Q Consensus 190 Y~~ls~~~~~~atPtl~naGt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ 268 (808)
|++|++++|+||||||+|||++ ++|||||||+++ +||++||+++++++++++|.|||||+|+|+|||+|++|+|++|.
T Consensus 143 y~~ls~~~f~paTPtl~NaG~~~~~~lsSCFl~~v-~Dsl~sI~~~~~~~a~lsk~GGGvG~~~s~lR~~Gs~I~g~~g~ 221 (720)
T PRK07306 143 ADEMIHQRYQPATPSFLNAGRARRGELVSCFLIQV-TDDMNSIGRSINSALQLSRIGGGVGINLSNLREAGAPIKGYEGA 221 (720)
T ss_pred HHHHHhCCeecCCCCeecCCCCCCCCeeeEEeCCC-CCChHHHHHHHHHHHHHHhcCCeeEecccccCCCCCcccCCCCC
Confidence 9999999999999999999997 599999999996 89999999999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcE
Q 003602 269 SNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLW 348 (808)
Q Consensus 269 ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w 348 (808)
|+|||||||+||+++.+++||| +||||+|+||++|||||++||++|+++|++..|++++|+||||||+|||+|++|++|
T Consensus 222 ssGvvp~mk~~d~~~~~v~QgG-~RrGA~~vyL~~wHpDI~~FL~~K~~~gde~~R~~nl~~~v~vpD~Fm~~v~~~~~w 300 (720)
T PRK07306 222 ASGVVPVMKLFEDSFSYSNQLG-QRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNEDM 300 (720)
T ss_pred CCCHHHHHHHHHHHHHHHhcCC-CcCcceEEEEeCCCccHHHHHHHhcccccchhhhcccchhhccCHHHHHHHHcCCCe
Confidence 9999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCchhhhchHH-----HHHHHHHHHcCc-eeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCc
Q 003602 349 SLFCPNEAPGLADCWGTEF-----ERLYTKYEKEGK-AKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGT 422 (808)
Q Consensus 349 ~Lf~P~~~~~L~~~yg~eF-----~~~Y~~~e~~~~-~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~ 422 (808)
+||+|+++ .++||++| ++.|+++++++. .+++|+||+||++|++++|+||+|||+|+|++||+||+ .|+
T Consensus 301 ~Lf~P~~~---~~~yG~~f~~~~~~~~Y~~~~~~~~i~~~~i~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~--~g~ 375 (720)
T PRK07306 301 YLFSPYSV---EKEYGVPFNYVDITKEYDELVANPNIRKTKIKARDLETEISKLQQESGYPYIINIDTANRANPI--DGK 375 (720)
T ss_pred EEeCcchh---hhhcCccccchhHHHHHHHHhhcccceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCC--CCc
Confidence 99999875 57899988 577998988654 57899999999999999999999999999999999998 499
Q ss_pred eeeecCCcccccCCCCC------------cceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHH
Q 003602 423 IKSSNLCTEVIQYTSPT------------ETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTG 490 (808)
Q Consensus 423 I~~sNlC~EI~~~~~~~------------e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~ 490 (808)
|.+||||+||+|+++|. +.++||||||||++|++. ..|+++|+
T Consensus 376 I~~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSINL~~~v~~-------------------------~~~~~~v~ 430 (720)
T PRK07306 376 IIMSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNMMTS-------------------------PDFGRSIE 430 (720)
T ss_pred eeecccccccccCCCchhhccccccccCCCccEEECHHHHHHHHhcc-------------------------ccHHHHHH
Confidence 99999999999998874 347999999999999864 35779999
Q ss_pred HHHHHHHHHHhcCC-CCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003602 491 IVTENLNKIIDVNY-YPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAARE 569 (808)
Q Consensus 491 ~avr~Ld~vId~~~-yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~ 569 (808)
++||+||+|||++. ||+|+++++|+++|+||||+|||||+|+++||+|+|+||++|+++|||+|+|+|++||++||+|+
T Consensus 431 ~avR~LDnViD~~~~~p~p~~~~~n~~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~Er 510 (720)
T PRK07306 431 TMVRALTFVTDSSNIDAVPSIKHGNSQAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARER 510 (720)
T ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHhcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999985 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCCcCccCCCCccccCCC---C--------------CCcccHHHHHHHHHhcCCccccccccCCCcchhhccC
Q 003602 570 G-PYETYHGSPVSKGILQPDMWGVN---P--------------SDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILG 631 (808)
Q Consensus 570 G-~~~~f~~S~~~~G~l~~d~~~~~---~--------------~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G 631 (808)
| +||.|++|+|++|.+ |+.|... | +...+|++||++|++||+|||+++|||||+|||+|+|
T Consensus 511 G~~fp~f~~S~~~~G~~-f~~~~~~~~~~~~~~v~~~~~~~~~p~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~g 589 (720)
T PRK07306 511 GETFHNFEKSKYADGSY-FDKYVTGDFVPKSDKVKELFKGIFIPTAADWAALRDAVMKDGLYHQNRLAVAPNGSISYIND 589 (720)
T ss_pred CCCCCCcCcChhhccch-hhhhhhcccCcchhhHHHhhhccCCCchhhHHHHHHHHHHhCcccccceeeCCccHHHHHhC
Confidence 9 699999999999998 6766321 1 2357899999999999999999999999999999999
Q ss_pred CCccccccccceeeEEcc-cCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHH
Q 003602 632 NNECFEPYTSNIYSRRVL-SGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTL 710 (808)
Q Consensus 632 ~s~gieP~~s~~y~R~~~-~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~ 710 (808)
+|+||||+|+++|+|+.. .|++. +..|.+|++.+++|+|||||+|+++
T Consensus 590 ~S~gIePi~s~v~~r~~~~~g~~~-------------------------------~~~p~l~~~~~~~f~tA~ei~~~~~ 638 (720)
T PRK07306 590 TSASIHPITQRIEERQEKKIGKIY-------------------------------YPAPGLSTETIPYYTSAYDMDMRKV 638 (720)
T ss_pred CCCccccchhhHhhhhhhcCCcee-------------------------------ccCCCCchhHHHHhCcHHhCCHHHH
Confidence 999999999999987532 13221 2357788899999999999999999
Q ss_pred HHHHHHhCCccccccceeEeeCCC---------------ChhHHHHHHHHHHHcCCceEEEEecCcccc
Q 003602 711 VDMAVDRGCYIDHSQSLNIHMDQP---------------NFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764 (808)
Q Consensus 711 i~~~a~~Q~~vDQs~S~nl~~~~~---------------~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (808)
|+|+|++|||||||||+|||++++ +.++|.++|++|||+|||| +||+|+....
T Consensus 639 I~~~A~~Qk~VDQsiS~tl~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt-~YY~Rt~~~~ 706 (720)
T PRK07306 639 IDVYAAATEHVDQGLSLTLFMRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKS-IYYIRTFTDD 706 (720)
T ss_pred HHHHHHHhccchhhhcCccccCCccccccccccccccCCCHHHHHHHHHHHHHcCCCe-EEEEeecccc
Confidence 999999999999999999999853 6799999999999999999 7999987654
No 17
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.1e-152 Score=1342.86 Aligned_cols=650 Identities=30% Similarity=0.447 Sum_probs=585.1
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCC-CCcCHHhHHHHHHhhcCC--CCCHHHHHHHHHHHHHhhccCCCChHHHH
Q 003602 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSI-EHCDPVLVSQKVCTGVYK--GVTTSQLDELAAETAAAMTTNHPDYASLA 78 (808)
Q Consensus 2 ~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~-~~v~~~~i~~~~~~~~~~--~itt~ei~~~~~~~a~~~~~~~p~y~~~A 78 (808)
+|+||||+.++||.+||..+|.+|...... +.-....++.+|...+.+ .+|++|||+++.++..+.-...|+|..+|
T Consensus 6 ~ViKRDG~~v~Fd~~KI~~AI~kA~~av~~~~~~~~~~l~~~V~~~l~~~~~~sVeeIQDiVE~~L~~~g~~~~~~~~vA 85 (771)
T PRK06406 6 EVIKRDGTVVPFDKKKIAMAIYKAMLSVKNGSMEDAEELTDKVVERLKKYERPTVEQIQDIVEKVLMTKKINGKDFTDVA 85 (771)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 799999999999999999999998765531 112234666777666665 49999999999888877766788888887
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcchhHHHHHHHhHHHHhhhhcccccCCCChhhHHHHHHhhccc
Q 003602 79 ARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (808)
Q Consensus 79 ~rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk 158 (808)
....+...+++ ...+....|+.+||..|+|.|+++|.+|||+|
T Consensus 86 KaYI~YR~~r~-------------------------------------~~r~~k~~~~~~~~~~~~~~a~~vl~~RYl~k 128 (771)
T PRK06406 86 KSYILYREKRR-------------------------------------KIREEKELIGVKDDLKLTLNAIKVLEARYLLK 128 (771)
T ss_pred HHHHHHHHHHH-------------------------------------hccccccccCcccccccCHHHHHHHHHHHhcc
Confidence 66532211110 00011234677899999999999999999999
Q ss_pred -cCCcccCCHHHHHHHHHhhhccCC-------------------------------------------------------
Q 003602 159 -VQGKVVERPQHMLMRVAVGIHKDD------------------------------------------------------- 182 (808)
Q Consensus 159 -~~g~~~E~pq~~~~RvA~~l~~~~------------------------------------------------------- 182 (808)
.+|+++|+||+||||||++++..+
T Consensus 129 d~~g~~~E~p~~~f~rvA~~va~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (771)
T PRK06406 129 DEDGKIIETPRQMFRRVARHIAIVEALYDDEVYDKTGKQKENAEVIGKLSVTQEDMLKRAFRYLKEEGIMKGDFEEFLDF 208 (771)
T ss_pred CCCCCEecCHHHHHHHHHHHHcchhhcccchhcccccccccccccccchhhhhhhhhhhhhhhhhhhccccccchhhhhh
Confidence 578899999999999999987532
Q ss_pred --------hHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeee
Q 003602 183 --------IDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHN 254 (808)
Q Consensus 183 --------~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~ 254 (808)
.+++++||++|++++|+||||||+|||++++|||||||+++ +||++|||++++++|+++|.|||||+|||+
T Consensus 209 ~~~~~~~~~~~~~~fy~~ms~~~f~pasP~l~NaG~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~k~GGGvG~~~S~ 287 (771)
T PRK06406 209 LKTKWDSIEEYINKFEEVMSNLKFVPNSPTLMNAGTKLGQLSACFVLPV-PDSIEGIFNALKYTAMIHKSGGGTGFSFSR 287 (771)
T ss_pred hccchhhHHHHHHHHHHHHHcCCEecCCHHHhcCCCCCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCceEEeccc
Confidence 23578999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred ecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceeccc
Q 003602 255 IRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWV 334 (808)
Q Consensus 255 iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~i 334 (808)
|||+|++|+|++|.||||||||++||+++.+|+||| +||||.|+||++|||||++||++|... ..+++++|+||+|
T Consensus 288 iRp~G~~i~~~~g~ssG~vsfm~~~d~~~~~i~QGG-~RrGA~m~~L~~~HpDI~eFI~~K~~~---~~~~~n~n~sV~i 363 (771)
T PRK06406 288 LRPKDDIVASTKGVASGPLSFMRIFDVTTDVIKQGG-KRRGANMGILSYHHPDIMEFITSKDSE---NKVLSNFNISVAV 363 (771)
T ss_pred cCCCCCccCCCCCcCCChhhHHHHHHHHHHHHHcCC-ccccceEEEecCCCccHHHHHHhcccc---cchhhcCceeEEe
Confidence 999999999999999999999999999999999998 899999999999999999999999643 2457899999999
Q ss_pred CHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhh
Q 003602 335 PDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKK 414 (808)
Q Consensus 335 pD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~ 414 (808)
||+||++|++|++|.|++|++ |..+++|+||+||++|++++|+||+|||+|+|++|++
T Consensus 364 ~D~FM~~v~~d~~~~L~~P~~----------------------g~~~~~v~AreL~~~I~~~a~~tGePgi~F~D~iNr~ 421 (771)
T PRK06406 364 TDEFFDKLDNDDYYPLRNPRN----------------------GKEVKRIKARQVWDLIITQAWKTGDPGVIFLDEINRK 421 (771)
T ss_pred CHHHHHHHHcCCCeEeecCCC----------------------CceeeeecHHHHHHHHHHHHHHHCCCeEEEhHhHHhc
Confidence 999999999999999999974 4568899999999999999999999999999999999
Q ss_pred CCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH
Q 003602 415 SNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTE 494 (808)
Q Consensus 415 ~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr 494 (808)
||+++.|+|.+||||+||+++. +++|||+||||++||.+ +.|||+.|+++|+++||
T Consensus 422 n~~~~~G~I~~tNpCgEq~L~p----~~sCnLgSINL~~~v~~--------------------~~~D~~~l~~~v~~avr 477 (771)
T PRK06406 422 NPVKNLGEIESTNPCGEQPLLP----YESCNLGSINLSKFVEN--------------------GKIDWDRLRETVHIATR 477 (771)
T ss_pred CCCccCCceEeeccccccccCC----CcceechhhhHHHHhcc--------------------cCCCHHHHHHHHHHHHH
Confidence 9999999999999999997753 46999999999999854 46999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 003602 495 NLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYET 574 (808)
Q Consensus 495 ~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~ 574 (808)
|||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++||++|+|+|+++|++||+|+|+||.
T Consensus 478 ~LDnvID~~~yPl~~~~~~~~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~~LAkErG~fp~ 557 (771)
T PRK06406 478 FLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPA 557 (771)
T ss_pred HHHHHHhcccCchHHHHHHHhhcCCceechHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCc-e
Q 003602 575 YHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE-F 653 (808)
Q Consensus 575 f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~-~ 653 (808)
|++|.|.+ ...|+|||++||||||||||+|+|+|+||||+|+++|+|++.+|+ |
T Consensus 558 f~~s~~~~-------------------------~~~g~RNs~ltaiAPTgSiS~i~g~SsGIEP~fa~~y~R~v~~g~~~ 612 (771)
T PRK06406 558 WYGSEWEK-------------------------KGIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQEL 612 (771)
T ss_pred cCccchhh-------------------------cCCcccccceeeeCCcchhhhhcCCCCccCccchhheEEEecCCcee
Confidence 99998842 124899999999999999999999999999999999999998885 7
Q ss_pred EEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC
Q 003602 654 VVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ 733 (808)
Q Consensus 654 ~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~ 733 (808)
.++|++|.+.|++.|+|+++++.++. ++|++|++ .+|++++.+|+|||||+|++||+|||++|||||||||+|||+++
T Consensus 613 ~~vn~~l~~~l~~~g~~~~~~~~~i~-~~gs~~~~-~~p~~~~~~f~tA~dI~~~~~i~m~A~~Qk~vDqsiSkTinlp~ 690 (771)
T PRK06406 613 LEVNPLFEEITRKRGLYSEELMRKVA-ETGNLQNI-DVPEDIKRIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINLRY 690 (771)
T ss_pred EEecHHHHHHHHHcCCCcHHHHHHHH-hCCCcccc-cCChHHHhhcccHHhCCHHHHHHHHHHHcccccCcccCceecCC
Confidence 89999999999999999999999874 68999999 69999999999999999999999999999999999999999996
Q ss_pred -CChhHHHHHHHHHHHcCCceEEEEecCcccccc
Q 003602 734 -PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADA 766 (808)
Q Consensus 734 -~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (808)
++.++|.++|++||++||||+|||.-..+..+.
T Consensus 691 ~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~~qv 724 (771)
T PRK06406 691 DATPEDIAKAYRLAKDLHCKGITVYRDKSKTVQV 724 (771)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEcCCCcccce
Confidence 789999999999999999999999544333333
No 18
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.9e-146 Score=1271.75 Aligned_cols=552 Identities=37% Similarity=0.597 Sum_probs=525.9
Q ss_pred HhhhhcccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhhhccCChHHHHHHHHHHhcCceecccccccccCC
Q 003602 131 LDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGT 210 (808)
Q Consensus 131 l~~~i~~~rD~~~~y~g~~~l~~~Yllk~~g~~~E~pq~~~~RvA~~l~~~~~~~~~~~Y~~ls~~~~~~atPtl~naGt 210 (808)
.+..||++||+.|+|+|+++|.+||++| + |+||++|||||++++..+.+++++||++|++++|+||||||+|+|+
T Consensus 9 ~~~~i~~~rd~~~~~~~~~~l~~rYl~~--~---Es~~~~~~RvA~~la~~~~~~~~~fy~~Ls~~~~~patP~l~naG~ 83 (601)
T PRK09102 9 FQINIDRSRDAWLTEFGKATLRDRYLLE--G---ESYQDLFARIAEAYADIDPEHAQRFYDYMSRGWFMPATPVLSNGGT 83 (601)
T ss_pred ccceecchhhcccCHHHHHHHHHhhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCEEcCCHHHhcCCC
Confidence 4567999999999999999999999998 2 9999999999999998778899999999999999999999999999
Q ss_pred CCCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCC
Q 003602 211 PRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGG 290 (808)
Q Consensus 211 ~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG 290 (808)
+++|++||||+.+ +||+++|+++++++++++|.|||||+|+|+|||+|++|+|. |.|+|+||||++||+++.+|+|||
T Consensus 84 ~~~~lssCfl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~~~-g~ssG~v~f~k~~d~~~~~i~qgg 161 (601)
T PRK09102 84 DRGLPISCFLNYV-EDSLEGIVNTWNENVWLAKRGGGIGSYWGNVRSIGEPIRNN-GKSSGIIPFIKVMDSLTLAISQGS 161 (601)
T ss_pred CCCCeeeEEeCCC-CCCHHHHHHHHHHHHHHHhhCCeeeecccccCCCCCccCCC-CCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999986 89999999999999999999999999999999999999986 899999999999999999999998
Q ss_pred CccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHH
Q 003602 291 GKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERL 370 (808)
Q Consensus 291 ~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~ 370 (808)
+||||+|+||++|||||++||++|+++|++.+|++++|+||||||+|||+|++|++|+||+|++
T Consensus 162 -~RrGA~~~~L~~~HpDI~~Fi~~K~~~g~~~~r~~n~n~sv~i~D~FM~~v~~d~~w~L~~p~~--------------- 225 (601)
T PRK09102 162 -LRRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLISPKD--------------- 225 (601)
T ss_pred -ccccceEEEEeCCCcCHHHHHHHhhccCcccccccCCeeEEEECHHHHHHHHcCCCeEEEcCCC---------------
Confidence 8999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCC--CC-ceeeecCCcccccCC-----CCCcce
Q 003602 371 YTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQN--LG-TIKSSNLCTEVIQYT-----SPTETA 442 (808)
Q Consensus 371 Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~--~G-~I~~sNlC~EI~~~~-----~~~e~~ 442 (808)
+..+++|+||+||++|++++|+||+|||+|+|++|+++|+++ .| +|.+||||+||+|++ .+++++
T Consensus 226 -------~~~~~~i~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~p~~~~~~G~~I~~sNpC~Ei~l~~~~~~~~~~~~~ 298 (601)
T PRK09102 226 -------KSVIRTVKARDLWAKILETRIETGEPYLLFIDNVNRALPEVYKDLGLKVKASNLCSEITLPTGIDHLGEDRTA 298 (601)
T ss_pred -------CeEEEEecHHHHHHHHHHHHHHhCCCeEEEHHHhhhhCcccccccCCeEEeeCcccceecccccccCCCCcee
Confidence 345789999999999999999999999999999999998754 46 899999999999998 677899
Q ss_pred eeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHh--cCCCC--HHHHHHHhhccC
Q 003602 443 VCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIID--VNYYP--VETARRSNLRHR 518 (808)
Q Consensus 443 ~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId--~~~yp--~~~~~~~~~~~R 518 (808)
+|||+||||++|++ |+.|+++|+++||+||+||| ++.+| ++++++.++++|
T Consensus 299 ~CnL~SINL~~~v~-------------------------~~~~~~~v~~~vr~LDnvid~~i~~~p~~~~~~~~~~~~~R 353 (601)
T PRK09102 299 VCCLSSLNLEYYDE-------------------------WKDTDAFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRER 353 (601)
T ss_pred eeeecceeHHHhcc-------------------------hhhHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcC
Confidence 99999999999974 47889999999999999998 55555 999999999999
Q ss_pred CceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcc
Q 003602 519 PIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRW 598 (808)
Q Consensus 519 ~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~ 598 (808)
+||||+|||||+|+++|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|
T Consensus 354 ~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~----------------------- 410 (601)
T PRK09102 354 SVGLGVMGFHSYLQSKMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDA----------------------- 410 (601)
T ss_pred ccccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch-----------------------
Confidence 999999999999999999999999999999999999999999999999999999843
Q ss_pred cHHHHHHHHHhcC--CccccccccCCCcchhhcc-CCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHh
Q 003602 599 DWGGLRDMISKNG--VRNSLLVAPMPTASTSQIL-GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIK 675 (808)
Q Consensus 599 dW~~Lr~~i~~~G--~RNs~l~AiaPT~stS~i~-G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~ 675 (808)
+++| +|||+++|||||||||+|+ |+|+||||+|+++|+|++.+|+|.++|++|.++|+++|+|+++++
T Consensus 411 ---------~~~G~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~ 481 (601)
T PRK09102 411 ---------AGYGVMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVW 481 (601)
T ss_pred ---------hhhCchhcccceeeeCCCcHHHHHcCCCCCCcccchhhheeEeecCceEEEECHHHHHHHHHcCCChHHHH
Confidence 2589 9999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred hhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceE
Q 003602 676 NKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTG 754 (808)
Q Consensus 676 ~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~ 754 (808)
++++.+.|++|++|.+|++++.+|+|||||+|++||+|||++|||||||||+|||+++ .+.++|.++|++|||+||||
T Consensus 482 ~~~~~~~gsvq~~~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~- 560 (601)
T PRK09102 482 SSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS- 560 (601)
T ss_pred HHHHhcCCCcccCccCChhHHhhcCcHhhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHHHHHHHHHhCCCE-
Confidence 9999999999999999999999999999999999999999999999999999999997 48999999999999999999
Q ss_pred EEEecCcccccccccc
Q 003602 755 MYYLRSRAAADAIKFT 770 (808)
Q Consensus 755 ~YY~r~~~~~~~~~~~ 770 (808)
+||+|+++...++++.
T Consensus 561 ~yy~R~~~~~~~~~~~ 576 (601)
T PRK09102 561 LYYQRSKSVQRADKVS 576 (601)
T ss_pred EEEEcCchhhhhHHhc
Confidence 8999999999998874
No 19
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.8e-143 Score=1259.42 Aligned_cols=566 Identities=26% Similarity=0.398 Sum_probs=512.5
Q ss_pred cccCC-HHHHHHHHHhhhccC------ChHHHHHHHHHHhcCceecccccccccCCCCC-cccccccccccCCCHHHHHH
Q 003602 162 KVVER-PQHMLMRVAVGIHKD------DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRA-QLSSCFLVCMKDDSIEGIYD 233 (808)
Q Consensus 162 ~~~E~-pq~~~~RvA~~l~~~------~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~-~lsSCfl~~~~~DS~~~I~~ 233 (808)
+++|. |+++|.|||++||.. +.+++++||++|++++|+||||||+|||++++ ||+||||+++++||++||++
T Consensus 125 ~~~e~~~~~~~~RVA~~la~~E~~~~~~~~~~~~fY~~Ls~~~f~PatPtL~NAGt~~~~~lssCFVl~~~~DSlegI~d 204 (858)
T PRK08115 125 KPLEIFYEQIAKRNATGLAAVEKTEEKRKESFEKFYQELVNMNFVPAGRVLYGAGSKTDVTYFNCYVMPFVKDSREGISE 204 (858)
T ss_pred CcccCCHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHcCCeecCChHhhcCCCCCCCceeeEEecCCCCCCHHHHHH
Confidence 57785 999999999999852 35678999999999999999999999999988 89999999877899999999
Q ss_pred HHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHH
Q 003602 234 TLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLD 313 (808)
Q Consensus 234 ~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~ 313 (808)
+++++|+|+|+|||||+|||+|||+|++|+|++|+||||||||++||+++.+|+||| +||||.|+||++|||||++||+
T Consensus 205 ~~ke~a~i~k~GGGvG~nfS~LRp~Gs~I~g~~g~SSG~Vsfm~~fd~~~~~V~QGG-~RRGA~mv~L~~wHPDI~eFI~ 283 (858)
T PRK08115 205 HRKQVMEIMSRGGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGG-SRRGAQMIMLADWHPDILEFII 283 (858)
T ss_pred HHHHHHHHHhcCCeEEecccccCCCCCccCCCCCcCCCeecHHHHHHHHHHHHHhCC-CcccceEEEecCCcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hh-----------hhcCccccc----------------------------------------------------------
Q 003602 314 LR-----------KNHGKEEHR---------------------------------------------------------- 324 (808)
Q Consensus 314 ~K-----------~~~g~e~~r---------------------------------------------------------- 324 (808)
+| +|+|++..|
T Consensus 284 aK~~~~~~~~~l~~n~gde~~r~~a~ek~~~~~ls~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~lk~~~~~~~~~~ 363 (858)
T PRK08115 284 SKMQNPRILRYLLENTEDEQIKRLVKEKLKFTPLSEVEEAMYQAIVNYKNIEGQGGFDTKVIKEAENKLRTGGTYTVNNP 363 (858)
T ss_pred hccccchhhhhhhcccccHhhhhhhhhhhcccccchhhhhhhhhhhcccccccccccchhhhhhhhhhhccccccccccc
Confidence 77 456666322
Q ss_pred --ccccceecccCHHHHHHHHcCCcEEEecCCCCC---CchhhhchHHHHH--HHHHHHcC---ceeEEEeHHHHHHHHH
Q 003602 325 --ARDLFYALWVPDLFMERVQSNGLWSLFCPNEAP---GLADCWGTEFERL--YTKYEKEG---KAKKVVQAQNLWFEIL 394 (808)
Q Consensus 325 --~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~---~L~~~yg~eF~~~--Y~~~e~~~---~~~~~v~Ar~L~~~I~ 394 (808)
+.++|+||+|||+|||+|++|++|+||+|+... .+.+.||++|.+. |.+|+..+ ..+++|+||+||++|+
T Consensus 364 ~~l~n~NiSV~itD~FMeaVe~d~~w~L~~P~~~~~~~~~~~~Y~~~~~~~gd~~~~e~~g~~~~v~~~I~AReLw~~I~ 443 (858)
T PRK08115 364 EFLTGANISVCLTKEFMEAVENDEEYELRFPDVENYTEEEMEIYNEEWHEVGDVREWEKMGYPVRTYRKIKAKELWNLIN 443 (858)
T ss_pred cccccceeEEEECHHHHHHHHcCCCEEEECCcccccchhhHhhhccccccchhHHHHhhcccccceeEEEcHHHHHHHHH
Confidence 345899999999999999999999999997642 3566788888776 67787755 4678999999999999
Q ss_pred HHHHhhCCcceeehhhHhhhCCCCCCC-ceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccC
Q 003602 395 KSQIETGTPYMLFKDTCNKKSNQQNLG-TIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSR 473 (808)
Q Consensus 395 ~~~~etG~P~i~f~D~~Nr~~~~~~~G-~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~ 473 (808)
+++|+||+|||+|+|++|+++|+++.| +|.+||||+||+++. +++|||+||||++|++.
T Consensus 444 ~~a~etGePgI~F~D~iNr~nn~~~~g~~I~aTNPCgEqpL~p----~~sCNLgSINL~kfV~~---------------- 503 (858)
T PRK08115 444 ICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAP----YSVCNLAAINLANMADK---------------- 503 (858)
T ss_pred HHHHHhCCCeEEEHHHhhhcCCccccCCeeeecCccccccCCC----CcccchHHHHHHHHhhc----------------
Confidence 999999999999999999999999888 899999999987653 78999999999999963
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 003602 474 GSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFET 553 (808)
Q Consensus 474 ~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~ 553 (808)
+++.|||+.|+++|+++|||||+|||.+.||+++++++++++|+||||+|||||+|+++|+||+|+||++|+++|||+
T Consensus 504 --~~~~fD~~~L~~~V~~avRfLDnVID~n~yPl~e~~~~~~~~R~IGLGvmGLAD~L~~lgIpYdSeEA~~l~~~I~e~ 581 (858)
T PRK08115 504 --ETKTVDYEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALGERRVGLGVMGLHDLLIYCETVYGSEEGNQLVDQIFET 581 (858)
T ss_pred --cccccCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhhcCCeeechhhHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 235799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCC
Q 003602 554 IYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNN 633 (808)
Q Consensus 554 i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s 633 (808)
|+|+|++||++||+|+|+||.|++|+|++|.++.+.|....-....|+.|+++|++||+|||+++|||||||||+|+|+|
T Consensus 582 I~~~A~~AS~eLAkErG~FP~f~gs~~~~~~~~r~~~~~~~~~~~~~~~Lre~I~k~GiRNS~ltaIAPTGSiS~Iag~S 661 (858)
T PRK08115 582 IATTAYRTSIELAKEKGSFPFLVGQTEEETAKLREAFINTGYMKKMPEDIREDILKYGIRNSHLLTVAPTGSTGTMVGVS 661 (858)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCCchhhhhHHHhhhhhccccccCcHHHHHHHHHhCcchhceeeeCChHHHHHHhCCC
Confidence 99999999999999999999999999999876655443221123358999999999999999999999999999999999
Q ss_pred ccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHH
Q 003602 634 ECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDM 713 (808)
Q Consensus 634 ~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~ 713 (808)
+||||+|+++|.|++..|+|+++|+++++++.+.+.| ..|++++++|+|||||+|++||+|
T Consensus 662 sGIEPifs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~-------------------~~~~~l~~~F~TA~eI~p~~hI~m 722 (858)
T PRK08115 662 TGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDKHPE-------------------ADENHLPEWFISAMELKPEAHADV 722 (858)
T ss_pred cccCcCeeeeEEEEeccCceEEEchHHHHHHHHhCCC-------------------CCchhHHHhcccHhhCCHHHHHHH
Confidence 9999999999999999999999999988776653322 135667779999999999999999
Q ss_pred HHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCccccccccc
Q 003602 714 AVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKF 769 (808)
Q Consensus 714 ~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~ 769 (808)
||++|||||||||+|||+++ .+.++|.++|++||++||||+|||++..+..++...
T Consensus 723 qAa~Qk~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qvL~~ 779 (858)
T PRK08115 723 QCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQVLTL 779 (858)
T ss_pred HHHHccccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCccceeeee
Confidence 99999999999999999996 589999999999999999999999887777665433
No 20
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.5e-142 Score=1267.29 Aligned_cols=552 Identities=32% Similarity=0.495 Sum_probs=520.8
Q ss_pred ccccCCCChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhhhccCC---------hHHHHHHHHHHhcCceeccccccc
Q 003602 137 YDRDFDYDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVAVGIHKDD---------IDSAIKTYHMMSQRWFTHASPTLF 206 (808)
Q Consensus 137 ~~rD~~~~y~g~~~l~~~Yllk-~~g~~~E~pq~~~~RvA~~l~~~~---------~~~~~~~Y~~ls~~~~~~atPtl~ 206 (808)
..+|..|+++|+++|.++||+| .+|+++|+||++|||||+++|..+ .+++++||++|++++|+|+||||+
T Consensus 6 ~~~~~~~~~~a~~vl~~rYl~k~~~g~~~Es~~~~~~RVA~~la~~e~~~~~~~~~~~~~~~fy~~m~~~~f~pasP~l~ 85 (752)
T PRK08665 6 DLPDMKLTDNALTVLEKRYLKKDEDGKPIETPEDMFRRVARTIAAAELIYDSKADVEALADRFYDLMTSLEFLPNSPTLM 85 (752)
T ss_pred ccccCCcCHHHHHHHHHhhCccCCCCCcccCHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHcCCeecCChHHh
Confidence 4578899999999999999999 478888999999999999998622 246889999999999999999999
Q ss_pred ccCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHH
Q 003602 207 NAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYV 286 (808)
Q Consensus 207 naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v 286 (808)
|||++++|||||||+++ +||+++||++++++|+++|.|||||+|||+|||+|++|+|++|+||||||||++||+++.+|
T Consensus 86 naG~~~~qlssCFv~~v-~Dsl~~I~~~~~~~a~i~k~GGGvG~~~S~lRp~G~~v~~~~g~asGpvsfm~~~d~~~~~v 164 (752)
T PRK08665 86 NAGRELGQLSACFVLPV-GDSIEEIFDAVKHAALIHKSGGGTGFSFSRLRPKNDRVGSTGGVASGPVSFMRVFDAATEAI 164 (752)
T ss_pred cCCCCCCcccceeecCC-CCCHHHHHHHHHHHHHHHhcCCeEEEeccccCCCCCcccCCCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999986 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchH
Q 003602 287 DQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTE 366 (808)
Q Consensus 287 ~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~e 366 (808)
+||| +||||.|+||++|||||++||++|++.| +.+++|+||+|||+||++|++|++|+||+|++
T Consensus 165 ~qgG-~RRGA~m~~l~~~HpDI~~FI~~K~~~~----~~~~~n~sV~i~D~Fm~av~~d~~~~L~~p~~----------- 228 (752)
T PRK08665 165 KQGG-TRRGANMGILRVDHPDIMEFITCKEDNG----ELTNFNISVAITEAFMEAVEADEEYDLINPRT----------- 228 (752)
T ss_pred HhCC-cccceeEEEEcCCCccHHHHHHhcccCC----ccccceeeeccCHHHHHHHHcCCCeEEEcCCC-----------
Confidence 9998 8999999999999999999999998776 36899999999999999999999999999974
Q ss_pred HHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeec
Q 003602 367 FERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNL 446 (808)
Q Consensus 367 F~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL 446 (808)
|...++|+||+||++|++++|+||+|||+|+|++||+||+++.|+|.+||||+||+++. +.+|||
T Consensus 229 -----------g~~~~~i~Ar~l~~~I~~~a~~~GePgi~f~D~iN~~n~~~~~g~I~~tNpCgEq~L~p----~~~CnL 293 (752)
T PRK08665 229 -----------GEVVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIESTNPCGEQPLLP----YESCNL 293 (752)
T ss_pred -----------ceeEEEEEHHHHHHHHHHHHHHhCCCeEEEHHHHhhcCCCCcCCcEEEeccccccccCC----CCceec
Confidence 45689999999999999999999999999999999999999999999999999987763 459999
Q ss_pred cccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecch
Q 003602 447 ASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQG 526 (808)
Q Consensus 447 ~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~G 526 (808)
+||||++||++ +.|||++|+++|+++|||||+|||++.||+|++++.++++|+||||+||
T Consensus 294 gSiNL~~~v~~--------------------~~~D~~~l~~~v~~avr~LDnvId~~~~Pl~~~~~~~~~~R~IGLGv~G 353 (752)
T PRK08665 294 GSINLSKMVKN--------------------GDVDWEKLREVVHLAVRFLDNVIDANKYPLPQIEEMTKGNRKIGLGVMG 353 (752)
T ss_pred cceeHHHHhcc--------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcCccccchhh
Confidence 99999999964 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHH
Q 003602 527 LADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDM 606 (808)
Q Consensus 527 lad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~ 606 (808)
|||+|+++|++|+|+||++|+++||++|+++|+++|++||+|+|+||.|++|+|.+|.+
T Consensus 354 lad~L~~lgi~Y~S~ea~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~--------------------- 412 (752)
T PRK08665 354 WADMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL--------------------- 412 (752)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc---------------------
Confidence 99999999999999999999999999999999999999999999999999999976543
Q ss_pred HHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCc-eEEeChHHHHHHHHcCCCcHHHhhhhhccCCcc
Q 003602 607 ISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE-FVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSV 685 (808)
Q Consensus 607 i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~-~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv 685 (808)
.|+|||++||||||||||+|+|+|+||||+|+++|+|++.+|+ +..+|++|.+.|+++|+|++++++++ ..+|++
T Consensus 413 ---~~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~-~~~gs~ 488 (752)
T PRK08665 413 ---GPMRNATVTTIAPTGTISIIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKI-AEKGSI 488 (752)
T ss_pred ---ccccccceeeeCCccHHHhhcCCCCccCccccceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhcCCc
Confidence 3799999999999999999999999999999999999998887 68899999999999999999999886 578999
Q ss_pred cccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCcccc
Q 003602 686 QKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764 (808)
Q Consensus 686 ~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (808)
|++|.+|++++.+|+|||||+|++||+|+|++|||||||||+|||+++ .+.++|.++|++||++||||+|||.-..+..
T Consensus 489 ~~~~~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~ 568 (752)
T PRK08665 489 QDIDEVPEDVRRVFVTAHDISPEWHVRMQAAFQKHTDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDE 568 (752)
T ss_pred ccCCCCChHHHHhcCcHhhCCHHHHHHHHHHHccccchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCccc
Confidence 999999999999999999999999999999999999999999999996 6899999999999999999999995444433
Q ss_pred c
Q 003602 765 D 765 (808)
Q Consensus 765 ~ 765 (808)
+
T Consensus 569 ~ 569 (752)
T PRK08665 569 Q 569 (752)
T ss_pred c
Confidence 3
No 21
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=100.00 E-value=4.7e-141 Score=1235.89 Aligned_cols=566 Identities=33% Similarity=0.529 Sum_probs=532.6
Q ss_pred HHHHhhccc-cCCcccCCHHHHHHHHHhhhccCCh--------HHHHHHHHHHhcCceecccccccc-cCCCCCcccccc
Q 003602 150 TLERSYLLK-VQGKVVERPQHMLMRVAVGIHKDDI--------DSAIKTYHMMSQRWFTHASPTLFN-AGTPRAQLSSCF 219 (808)
Q Consensus 150 ~l~~~Yllk-~~g~~~E~pq~~~~RvA~~l~~~~~--------~~~~~~Y~~ls~~~~~~atPtl~n-aGt~~~~lsSCf 219 (808)
+|.++|++| .+|.++|+||++|+|||++++..+. +++++||++|++++|+||||+|+| +|++++||+|||
T Consensus 1 ~l~~rY~~k~~~g~~~E~~~~~~~RvA~~la~~~~~~~~~~~~~~~~~fy~~l~~~~~~patp~l~n~~g~~~~~lssCf 80 (586)
T TIGR02504 1 VLAARYLLKDEDGGIIESPEDLFRRVARALAAAEDKYNSPVWKQWYERFYDLMVNLGFMPNSPTLMNAGGTRLGQLSACF 80 (586)
T ss_pred ChhhhhceecCCCCccCCHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHcCeEEccchhhhcccCCCCCcceeeE
Confidence 368899999 5688899999999999999986432 579999999999999999999999 899999999999
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEE
Q 003602 220 LVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAV 299 (808)
Q Consensus 220 l~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~v 299 (808)
|+++ +||+++|+++++++++++|.|||||+|+|.|||+|++|+|++|.||||||||++||+++.+|+||| +||||.|+
T Consensus 81 v~~v-~Ds~~~I~~~~~~~a~i~k~GGGvG~~~s~iRp~G~~i~g~~g~ssG~v~~~~~~d~~~~~v~qgG-~RrgA~~~ 158 (586)
T TIGR02504 81 VLPV-EDDMESIFEAAKEAALIFKRGGGVGYNFSTLRPKGAKVSGTGGVASGPVSFMRVFDAAAGVIKQGG-TRRGAQMG 158 (586)
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHhcCCceeecccccCCCCCccCCCCCCCCCchhHHHHHHHHHHHHHcCC-cccCceEE
Confidence 9987 899999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred eccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCc
Q 003602 300 YLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGK 379 (808)
Q Consensus 300 yl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~ 379 (808)
||++|||||++||++|++.|+ .+++|+||+|||+|||+|++|++|+||+|.+++.+.+.|| ++.+++
T Consensus 159 ~l~~~HpDi~~Fi~~K~~~~~----~~~~n~sv~i~D~Fm~~v~~d~~w~L~~p~~~~~~~~~y~---------~~~~~~ 225 (586)
T TIGR02504 159 ILDVWHPDIEEFIEAKKKEGK----LTNFNISVGVTDAFMEAVEADEEYKLRNPRTGEEIEELAE---------LDPKNK 225 (586)
T ss_pred EEeCCCchHHHHHHhcccccc----hhcceehcccCHHHHHHHHcCCCeEEECCCcccccccccc---------cccccc
Confidence 999999999999999998765 5799999999999999999999999999999999999998 244566
Q ss_pred eeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcC
Q 003602 380 AKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMG 459 (808)
Q Consensus 380 ~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~ 459 (808)
.+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|.+||||+||+|++ .++|||+||||++|+.+
T Consensus 226 ~~~~v~Arel~~~I~~~~~~tGePgi~f~D~~N~~~~~~~~~~i~~tNpC~Ei~l~~----~~~CnL~SiNL~~~v~~-- 299 (586)
T TIGR02504 226 VYKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQPLLP----YESCNLGSINLAKFVKN-- 299 (586)
T ss_pred eeeEEEHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCccCCceeeccCCccccccC----CcccchHHhhHHHHhhC--
Confidence 789999999999999999999999999999999999999999999999999999974 45999999999999965
Q ss_pred CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCC
Q 003602 460 VPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD 539 (808)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~ 539 (808)
....|||+.|+++|+++||+||+|||++.||+|++++.++++|+||||+|||||+|+++|++|+
T Consensus 300 ----------------~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~lgi~y~ 363 (586)
T TIGR02504 300 ----------------GFGSFDFERLREVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYD 363 (586)
T ss_pred ----------------CCCccCHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhcCCccccchhHHHHHHHHcCCCcC
Confidence 1236999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccc
Q 003602 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVA 619 (808)
Q Consensus 540 S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~A 619 (808)
|+||++++++|||.|+++|+++|++||+|+|+||.|++|+|++|.+++..+ ....|++|++.|++||+|||+++|
T Consensus 364 S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~-----~~~~~~~L~~~i~~~G~RNs~l~a 438 (586)
T TIGR02504 364 SEEARAFAEELMAFIADAAYRASAELAKERGPFPLFEASRYEMGRAMGARI-----PSALPAELREAIAKYGIRNAQLTT 438 (586)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccccccccc-----cccChHHHHHHHHHhCCCccceee
Confidence 999999999999999999999999999999999999999999999873322 123699999999999999999999
Q ss_pred cCCCcchhhccCCCccccccccceeeEEcccC-ceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhh
Q 003602 620 PMPTASTSQILGNNECFEPYTSNIYSRRVLSG-EFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAI 698 (808)
Q Consensus 620 iaPT~stS~i~G~s~gieP~~s~~y~R~~~~G-~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~ 698 (808)
||||||||+|+|+|+||||+|+++|.|++..| ++..+|++|.+.|++.|+|+++++..+ ..+|+++++|. |++++++
T Consensus 439 iaPTgtiS~i~g~S~gieP~~a~~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~~-~~~gs~~~~~~-p~~~~~~ 516 (586)
T TIGR02504 439 IAPTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYV-DEKGTVEGAPG-PEELPKV 516 (586)
T ss_pred eCCCchhhhhcCCCCccccchhhhhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHHH-HcCCCcccCCC-chhHHhh
Confidence 99999999999999999999999999998887 999999999999999999999988864 57899999999 9999999
Q ss_pred hhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecC
Q 003602 699 YKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRS 760 (808)
Q Consensus 699 y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~ 760 (808)
|+||+||+|+++|+|+|++|||||||||+|+|+++ .+.++|.++|++||++||||++|| |.
T Consensus 517 f~tA~di~~~~~i~~~a~~Q~~vD~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~y-R~ 578 (586)
T TIGR02504 517 FVTANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVY-RD 578 (586)
T ss_pred ccCcccCCHHHHHHHHHHHcCcccccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEE-eC
Confidence 99999999999999999999999999999999996 589999999999999999998777 44
No 22
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=100.00 E-value=1.5e-137 Score=1199.36 Aligned_cols=565 Identities=22% Similarity=0.322 Sum_probs=499.6
Q ss_pred ccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhhhcc-----CChHHHHHHHHHHhcCceecccccccccCCC
Q 003602 137 YDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHK-----DDIDSAIKTYHMMSQRWFTHASPTLFNAGTP 211 (808)
Q Consensus 137 ~~rD~~~~y~g~~~l~~~Yllk~~g~~~E~pq~~~~RvA~~l~~-----~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~ 211 (808)
.-++..++-++.++|++|||+| + .++||++|||||++++. .+.+++++||++|++++ +||||||+|+|++
T Consensus 6 ~~~~~~~~~~~~~~l~~rYl~~--~--e~~p~~~~~RVA~~la~~e~~~~~~~~~~~fy~~ls~~~-~patp~l~NaG~~ 80 (595)
T PRK06948 6 MIGDMDEQPICDAVFADRYALP--G--ETSRAQVFARVARALALAEPPDTRAGAARRFYRNLLNGA-IGAGRIMANAGAA 80 (595)
T ss_pred CCCCCCCCHHHHHHHHHhcCCC--C--CCCHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcCC-cccChhhhcCCCC
Confidence 3467788999999999999997 2 13799999999999986 34678999999999965 7999999999999
Q ss_pred C-CcccccccccccCC-----CHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHH
Q 003602 212 R-AQLSSCFLVCMKDD-----SIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARY 285 (808)
Q Consensus 212 ~-~~lsSCfl~~~~~D-----S~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~ 285 (808)
+ +||+||||+++.+| ++++|+++++++|+++|.|||||+|||+|||+|++|+|++|.|+||||||++||+++.+
T Consensus 81 ~~~~lssCfv~~v~d~~~~~~~~~~i~~~~~~~a~~~k~GGGvG~~~s~lR~~G~~i~~~~g~ssG~v~fm~~~d~~~~~ 160 (595)
T PRK06948 81 PDQTMVNCFVHPIRAPAALTAVHPNLDRALDDARLTLLMGGGIGYDFSAIPPADARPDADHPDSPGVCAALDRFDRICAA 160 (595)
T ss_pred CCCceeeeEEcccccccccccchhhHHHHHHHHHHHHhhcCeeeecccccCCCCCcCCCCCCCCCChhhHHHHHHHHHHH
Confidence 8 58999999987433 26999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhch
Q 003602 286 VDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGT 365 (808)
Q Consensus 286 v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~ 365 (808)
|+||| +||||.|+||++|||||++||++|+ ++.|++++|+||+|||+|||+|++|++|+||+|++. .+++|+
T Consensus 161 v~Qgg-~RrGA~~~~L~~~HpDI~~Fi~~K~----~~~~~~~~n~sv~i~D~FM~~v~~d~~~~L~~p~~~---~~~~~~ 232 (595)
T PRK06948 161 LPFRD-GRRGAQMAVLRCDHPDLLAFVAAKR----GRARWTTFNLSVAVTDAFMQAVAQDLPWALRHRAPP---RRAAGG 232 (595)
T ss_pred HHhCC-CCccCeEEEEcCCCCCHHHHHHhcC----CccccccceeeEeECHHHHHHHHcCCCeEeeCCccc---cccccc
Confidence 99998 8999999999999999999999997 357899999999999999999999999999999864 344554
Q ss_pred HHHHHHHHHHHcCc-eeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceee
Q 003602 366 EFERLYTKYEKEGK-AKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVC 444 (808)
Q Consensus 366 eF~~~Y~~~e~~~~-~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~C 444 (808)
++ ++++|. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||+||++++ +++|
T Consensus 233 ~~------~~~~g~~~~~~v~Arel~~~I~~~~~~tGePgi~F~D~iN~~n~~~~~g~I~~tNpC~Ei~L~~----~~~C 302 (595)
T PRK06948 233 AL------RGADGAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHERIDATNPCGEQPLPP----YGSC 302 (595)
T ss_pred cc------hhccCcceeeEEcHHHHHHHHHHHHHHHCCCeEEeHhHHHhhCCCccCCcEEeecCCCCcccCC----CCce
Confidence 43 234555 689999999999999999999999999999999999999999999999999998874 5799
Q ss_pred eccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeec
Q 003602 445 NLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGV 524 (808)
Q Consensus 445 NL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv 524 (808)
||+||||++||+.+. + ..+...|||++|+++|+++|||||+|||++.||+|++++.++++|+||||+
T Consensus 303 NLgSINL~~~v~~~~-----------~--~~~~~~~D~~~l~~~v~~avR~LDnvid~~~~p~~~~~~~~~~~R~IGLGv 369 (595)
T PRK06948 303 VLGPIDLSRFVRHPF-----------G--VGGEPRFDFAALATAVRIQVRMLDNALDLTRWPLAAHAREARQKRRIGVGV 369 (595)
T ss_pred eccceeHHHHhcccc-----------c--cccccccCHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhcCCCceecH
Confidence 999999999986410 0 012246999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHH
Q 003602 525 QGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLR 604 (808)
Q Consensus 525 ~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr 604 (808)
|||||+|+++|++|+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|.+|.+.. ...|++|+
T Consensus 370 mGlad~L~~lgi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~~---------~~~~~~l~ 440 (595)
T PRK06948 370 TGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRAG---------PPLPHAVC 440 (595)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcccccc---------ccCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987531 12489999
Q ss_pred HHHHhcCCccccccccCCCcchhhcc--CCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccC
Q 003602 605 DMISKNGVRNSLLVAPMPTASTSQIL--GNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDD 682 (808)
Q Consensus 605 ~~i~~~G~RNs~l~AiaPT~stS~i~--G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~ 682 (808)
++|++||+|||++||||||||||+|+ |+|+||||+|+++|+|++..|++... +++.+.....
T Consensus 441 ~~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~fa~~y~R~~~~g~~~~~-----------~~~~~~~~~~----- 504 (595)
T PRK06948 441 HAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGAR-----------GMRAENHAYR----- 504 (595)
T ss_pred HHHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccceeeeEEEEeccCCCccc-----------ceeeechhhh-----
Confidence 99999999999999999999999997 58999999999999999988875421 1111111111
Q ss_pred CcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCc
Q 003602 683 GSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSR 761 (808)
Q Consensus 683 Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~ 761 (808)
.++.++..|++++++|+||+||+|++||+|||++|||||||||+|||+++ .+.++|.++|++||++|||| +||+|..
T Consensus 505 -~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKg-it~~R~~ 582 (595)
T PRK06948 505 -LFRSLRGERAALPDYFVTAADVAPADHLAMRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKG-ITIFRPD 582 (595)
T ss_pred -hccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcccchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCE-EEEEeCC
Confidence 11234445677888999999999999999999999999999999999997 58999999999999999999 6666765
Q ss_pred ccc
Q 003602 762 AAA 764 (808)
Q Consensus 762 ~~~ 764 (808)
+..
T Consensus 583 ~~~ 585 (595)
T PRK06948 583 PAL 585 (595)
T ss_pred ccc
Confidence 544
No 23
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=100.00 E-value=9.7e-138 Score=1192.87 Aligned_cols=525 Identities=28% Similarity=0.409 Sum_probs=489.7
Q ss_pred ccccCCCChhhHHHHHHhhccccCCcccCCHHHHHHHHHhhhccC--ChHHHHHHHHHHhcCceecccccccccCCCCCc
Q 003602 137 YDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKD--DIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQ 214 (808)
Q Consensus 137 ~~rD~~~~y~g~~~l~~~Yllk~~g~~~E~pq~~~~RvA~~l~~~--~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~ 214 (808)
+++++-|+|+|+++|.++||+| + |+||++|||||++++.. +.+++++||++|++++|+||||||+|+|++++|
T Consensus 12 ~~~~~~~~~~~~~~l~~rYl~~--~---es~~~~~~RVA~~la~~~~~~~~~~~fy~~Ls~~~f~patP~l~NaGt~~~~ 86 (571)
T TIGR02510 12 GEIPEFANAHGRLMFKKGYLLK--G---ESVEEAFKEIAQRAAAHDIREEAEEKFFDLLARGKLALATPIFANTGLDRGL 86 (571)
T ss_pred ccchhhhhHHHHHHHHHhhcCC--C---CCHHHHHHHHHHHHhccccchHHHHHHHHHHHcCCeecCChhhhcCCCCCCC
Confidence 5667788999999999999997 2 89999999999999973 467889999999999999999999999999999
Q ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHh--hCCCc
Q 003602 215 LSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD--QGGGK 292 (808)
Q Consensus 215 lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~--QgG~~ 292 (808)
++||||+++ +||++||+++++++++++|.|||||+|||+|||+|++|+ ++|+|+|++|||++||.++.+++ ||| +
T Consensus 87 lsSCFv~~v-~Dsl~~I~~~~~e~a~l~k~GGGiG~~~S~lR~~G~~I~-~~g~ssG~~~~m~~~d~~~~~i~~~qgg-~ 163 (571)
T TIGR02510 87 PISCAGSYV-EDDTADFLEAQAEVAMLAKNGFGTALYLGDIRPRGADIR-DNGEHNGADAFAPLFDNFIETFNKVAAA-G 163 (571)
T ss_pred eeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCeeeeeccccCCCCCccC-CCCCCCCcchHHHHHHHHHHHHHHhhCC-c
Confidence 999999986 899999999999999999999999999999999999998 57799999999999999999999 998 8
Q ss_pred cccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHH
Q 003602 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYT 372 (808)
Q Consensus 293 R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~ 372 (808)
||||+|+||++|||||++||++|+++|. ++++|+||+++|.||++++++.
T Consensus 164 RrGA~~~~L~~~HpDI~eFi~~K~~~~~----~~~~~~~v~~~d~f~~~~~~~~-------------------------- 213 (571)
T TIGR02510 164 RRGECAAYLDFEHGDFEELLGIQLEHPA----SAHLFWGFEKEDRWLEELIAGD-------------------------- 213 (571)
T ss_pred CccceEEEEcCCcccHHHHHHhcccCCC----CCceeeeeccCHHHHHHHHhCC--------------------------
Confidence 9999999999999999999999988764 6899999999999999998641
Q ss_pred HHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCC--CCCC-ceeeecCCcccccCCCCCcceeeecccc
Q 003602 373 KYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQ--QNLG-TIKSSNLCTEVIQYTSPTETAVCNLASI 449 (808)
Q Consensus 373 ~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~--~~~G-~I~~sNlC~EI~~~~~~~e~~~CNL~SI 449 (808)
.+||+||++|++++|+||+||++|+|++|+++|+ ++.| +|++||||+||+|++.++++++|||+||
T Consensus 214 -----------~~ar~lw~~I~~~~~etG~P~l~f~D~~N~~~p~~~~~~G~~I~asNlC~Ei~l~~~~~~~~~CnLgSi 282 (571)
T TIGR02510 214 -----------GEKMARWAELLKMRAETGIGYLFFNDIANEKAPEAFKALGIPIRASNLCTEIALPSDDEESFTCCLSSL 282 (571)
T ss_pred -----------chHHHHHHHHHHHHHHhCCceEEEhHHhhhhCchhhhhcCCeEEecCCCcceeccCCCCceeeeecchh
Confidence 1368999999999999999999999999999996 6788 8999999999999999999999999999
Q ss_pred ChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-----cCCCC---HHHHHHHhhccCCce
Q 003602 450 ALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIID-----VNYYP---VETARRSNLRHRPIG 521 (808)
Q Consensus 450 nL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId-----~~~yp---~~~~~~~~~~~R~iG 521 (808)
||++|+.. .++++|+++||+|||||| ++.+| +++++++++++|+||
T Consensus 283 NL~~~~~~--------------------------~~~~~v~~avr~LDnViD~~i~~~~~~p~~~~~~~~~~~~~~R~IG 336 (571)
T TIGR02510 283 NLLHWDEI--------------------------KDADAIETLVIFLDSVCDDFIAKAEEIPYDTLEKAIRFAEKARAIG 336 (571)
T ss_pred hHHHHhhc--------------------------ccccHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHHhcCCcc
Confidence 99998632 124899999999999999 46565 688888999999999
Q ss_pred eecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHH
Q 003602 522 IGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWG 601 (808)
Q Consensus 522 lGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~ 601 (808)
||||||||+|+++|++|+|+||++|+++|||+|+|+|++||++||+|+|+|+
T Consensus 337 LGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~---------------------------- 388 (571)
T TIGR02510 337 LGTLGFHSYLQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDE---------------------------- 388 (571)
T ss_pred cchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcch----------------------------
Confidence 9999999999999999999999999999999999999999999999999853
Q ss_pred HHHHHHHhcCCccccccccCCCcchhhccC-CCccccccccceeeEEcccCceEEeChHHHHHHHHcCCC---cHHHhhh
Q 003602 602 GLRDMISKNGVRNSLLVAPMPTASTSQILG-NNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW---SPIIKNK 677 (808)
Q Consensus 602 ~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G-~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~---~~~~~~~ 677 (808)
|++.++++|+|||+++|||||+|||+|+| +|+||||+|+++|+|++.+|+|+++|++|.+.|+++|+| .+++++.
T Consensus 389 -l~~~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~fa~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~ 467 (571)
T TIGR02510 389 -LAEVCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLTCNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIEEKMEDI 467 (571)
T ss_pred -hHHHHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcchhhhhhhhccCCceEEECHHHHHHHHhcCCccccHHHHHHH
Confidence 23446689999999999999999999996 999999999999999999999999999999999999999 7889999
Q ss_pred hhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC--CChhHHHHHHHHHHHcCCceEE
Q 003602 678 IIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ--PNFGKLTSLHFHAWLRGLKTGM 755 (808)
Q Consensus 678 i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~--~~~~~l~~~~~~Awk~GlKt~~ 755 (808)
|..++|+||++|.+|++++++|+|||||+|++||+|+|++|||||||||+|||+++ .+.+++..+|++|||+|||| +
T Consensus 468 i~~~~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~GlK~-~ 546 (571)
T TIGR02510 468 ALEHNGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAARQKHIDQAQSINLFFHADEAEPRDANAHRAFADDPGLKA-L 546 (571)
T ss_pred HHHcCCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHHccccccccCCccccCCCCCCHHHHHHHHHHHHHcCCCe-E
Confidence 99999999999999999999999999999999999999999999999999999975 47789999999999999999 9
Q ss_pred EEecCcccccc
Q 003602 756 YYLRSRAAADA 766 (808)
Q Consensus 756 YY~r~~~~~~~ 766 (808)
||||+++++.+
T Consensus 547 YY~rs~~~~~~ 557 (571)
T TIGR02510 547 YYLFSERGAKA 557 (571)
T ss_pred EeecchHHHHh
Confidence 99999888765
No 24
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....
Probab=100.00 E-value=1.5e-136 Score=1190.15 Aligned_cols=525 Identities=45% Similarity=0.756 Sum_probs=474.4
Q ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccc
Q 003602 215 LSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRK 294 (808)
Q Consensus 215 lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ 294 (808)
||||||+...+||+++|+++++++++++|.|||||+|+|.|||+|++|+|++|.|+|+||||++||+++++++||| +||
T Consensus 1 LssCfl~~~~~Ds~~~I~~~~~~~~~~~~~ggGvG~~~s~lR~~G~~i~~~~~~ssG~v~~~~~~~~~~~~i~q~g-~Rr 79 (538)
T PF02867_consen 1 LSSCFLMISVEDSLESIFDTLKEAARLSKYGGGVGIDFSNLRPKGSPIRGTGGKSSGPVSFMKLFDSSARAINQGG-KRR 79 (538)
T ss_dssp S-SEEEEEESSSSHHHHHHHHHHHHHHHCTT-EEEEEGTTS--TTCBETTTSSBCCHHHHHHHHHHHHHHHSSSTT-SSS
T ss_pred CceeeccCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcccccCCCCCcccccCCCCCCchhHHHHHHHHhhHhhhcc-ccc
Confidence 7999994434899999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred cceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHH
Q 003602 295 GAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKY 374 (808)
Q Consensus 295 ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~ 374 (808)
||.|+||++|||||++||++|+++|++++|++++|+||+|||+|||+|++|++|+||+|+++|.|++.||++|++.|.++
T Consensus 80 Ga~~~~l~~~HpDi~~fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~~~~w~L~~p~~~~~l~~~~g~~f~~~y~~~ 159 (538)
T PF02867_consen 80 GAQMVYLDIWHPDIEEFIDAKNNNGDEERRLRNLNISVNIPDEFMEAVENDEDWYLFDPRDAPELYDLYGEEFEKEYERY 159 (538)
T ss_dssp TEEEEEEETTBTTHHHHCTTTSSSSTCCG-STTEEEEEEE-HHHHHHHHTT-EEEEBCTTCSTTHHHHHHHHHHHHHHHH
T ss_pred cceeeeccCCHHHHHHHHHHhhcccchhhhhcccceeEEecHHHHHHhhcCCCCEEECCCcccchhhhhCCcHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC-ceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhh
Q 003602 375 EKEG-KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPR 453 (808)
Q Consensus 375 e~~~-~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~ 453 (808)
++++ ..+++|+||+||++|++++++||+||++|+|++||++|+++.|+|++||||+||+|+++++++++|||+||||.+
T Consensus 160 ~~~~~~~~~~v~Ar~l~~~I~~~~~~tG~Pgi~f~D~~Nr~~~~~~~~~I~~sN~C~Ei~l~~~~~~~~~CnL~SiNL~~ 239 (538)
T PF02867_consen 160 ERNGKIRKKTVPARELWEKILESAWETGEPGIIFIDNVNRHNPLKHGGPIRASNPCGEIPLPTSPDPYASCNLGSINLAR 239 (538)
T ss_dssp HHTTTSEEEEEEHHHHHHHHHHHHHHHS-SEEEEHHHHHHTSTTGGTSTEEEE-TTSSSEEE-BTTBTEEEEEEEEEGGG
T ss_pred hcCCCceeccccHHHHHHHHHHHHhhhCCceehhhHHHHhcCcccCCCeEeecCCCcceeecccccccccceeeeechhh
Confidence 9976 588999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHH
Q 003602 454 YVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFIL 533 (808)
Q Consensus 454 ~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~ 533 (808)
|+++ +...|||+.|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||||+|++
T Consensus 240 ~~~~------------------~~~~~d~~~l~~~v~~avr~Ld~vid~~~~p~~~~~~~~~~~R~iGlGv~Gla~~L~~ 301 (538)
T PF02867_consen 240 FVED------------------PFGRFDWEELREVVRLAVRFLDNVIDINDYPLPEARRANKRYRSIGLGVMGLADMLAK 301 (538)
T ss_dssp GCET------------------TSCEETHHHHHHHHHHHHHHHHHHHHHS--SSHHHHHHHHHH--EEEEEESHHHHHHH
T ss_pred hccc------------------ccccccHHHHhhHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccccccHHHHHHh
Confidence 9975 1257999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCC-----------CCcccHHH
Q 003602 534 LGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNP-----------SDRWDWGG 602 (808)
Q Consensus 534 ~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~-----------~~~~dW~~ 602 (808)
+|++|+|+||++++++|||+|+|+|++||++||+|+|+||+|++|+|++|+++++.|.... ....+|++
T Consensus 302 ~gi~y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 381 (538)
T PF02867_consen 302 LGIPYDSEEARELADEIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVDERSKVEKGLSIPTEDWDE 381 (538)
T ss_dssp TT--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCCGSSHHHCT---TTSHHHH
T ss_pred CCcCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhccccccccccccccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999886431 12348999
Q ss_pred HHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccC
Q 003602 603 LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDD 682 (808)
Q Consensus 603 Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~ 682 (808)
||++|++||+|||+++|||||+|||+|+|+|+||||+|+++|.|++..|+|..+|+++.+.|+++|+|+++++++|..++
T Consensus 382 Lr~~i~~~G~RNs~~~aiAPTgs~S~i~g~S~gIeP~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 461 (538)
T PF02867_consen 382 LREDIKKYGLRNSQLTAIAPTGSISLIAGTSSGIEPIFANVYTRRSLSGEFPVVNPYLLRDLKELGIWDEELIEEILRHQ 461 (538)
T ss_dssp HHHHHHHH--SSSS-BBBS--TTHHHHHTS-STTS--SSSEEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHHHHHHHTT
T ss_pred HHHHHhhhcCCcceeecCCCCCCeEeecCcCceeccchhhhhhhhhhcCCCcccChHHHHHHHHhCCcHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEe
Q 003602 683 GSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYL 758 (808)
Q Consensus 683 Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~ 758 (808)
|++++++.+|++.+.+|+|||||+|+++|+|+|++|||||||||+|+|+++ .+.++|..+|++||++||||+|||+
T Consensus 462 gsv~~~~~~~~~~~~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~tyY~ 538 (538)
T PF02867_consen 462 GSVQGLPELPDELKDVFKTAFEIDPEDHIRMQAARQKFVDQSISKTLNLPSDATVEDVAELYLYAWKLGLKGITYYR 538 (538)
T ss_dssp TCCTT-TTS-HHHHHHT--GGGSCHHHHHHHHHHHHTTSSS-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEEECEE
T ss_pred ccccccccCCcchhhhcccHHhCCHHHHHHHHHHhhccCccCcCceeeecCCCCHHHHHHHHHHHHHhCCCeeEEeC
Confidence 999999999999999999999999999999999999999999999999985 6889999999999999999999995
No 25
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=100.00 E-value=1e-134 Score=1206.47 Aligned_cols=580 Identities=23% Similarity=0.386 Sum_probs=520.8
Q ss_pred CChhhHHHHHHhhccccCCccc--CCHHHHHHHHHhhhccC-----------Ch-HHHHHHHHHHhcCceeccccccccc
Q 003602 143 YDYFGFKTLERSYLLKVQGKVV--ERPQHMLMRVAVGIHKD-----------DI-DSAIKTYHMMSQRWFTHASPTLFNA 208 (808)
Q Consensus 143 ~~y~g~~~l~~~Yllk~~g~~~--E~pq~~~~RvA~~l~~~-----------~~-~~~~~~Y~~ls~~~~~~atPtl~na 208 (808)
++-.+..+|.+||+.+..|.+. |+|.++|.|||.+++.. +. ....+||++|++++|+|+||||+|+
T Consensus 62 ~s~~a~~vl~~rY~~~~~g~~~~e~S~~q~f~RVA~~~a~~~~~~~~~~~~~~~~~f~~ef~~~L~~~~f~pnSP~l~Na 141 (953)
T PRK06556 62 WSVNATNIVASKYFRGAVGTPERENSLKQLIDRVVKTYTDAGREHGYFATEEDAEIFEHELTWLLLHQKFSFNSPVWFNV 141 (953)
T ss_pred ccHHHHHHHHhhhhccCCCCCcccCCHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHcCcEecCChHhhcC
Confidence 4566788999999988557653 69999999999998741 11 1345789999999999999999999
Q ss_pred CCC-CCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHh
Q 003602 209 GTP-RAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVD 287 (808)
Q Consensus 209 Gt~-~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~ 287 (808)
|++ ++||+||||+++ +||+++|+++++++++|+|+|||||+|||+|||+|++| +++|+|||||||||+||+++.+|+
T Consensus 142 G~~~~~qlssCFvl~v-~Dsle~I~~~~~~~a~i~K~GGGvG~nfS~LRp~G~~i-s~gG~sSGpvsFmki~D~~~~~ik 219 (953)
T PRK06556 142 GTESPQQVSACFILSV-DDSMESILNWYKEEGMLFKGGSGTGTNLSRIRSSKELL-SGGGTASGPVSFMRGADASAGTIK 219 (953)
T ss_pred CCCCCCceeeEEeCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEeccccCCCCCcC-CCCCCCCChhhHHHHHHHHHHHHH
Confidence 997 579999999997 89999999999999999999999999999999999999 789999999999999999999999
Q ss_pred hCCCccccceEEeccCCcccHHHHHHhhhhcCcc-------------------cccccccceecccCHHHHHHHHcCCcE
Q 003602 288 QGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKE-------------------EHRARDLFYALWVPDLFMERVQSNGLW 348 (808)
Q Consensus 288 QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e-------------------~~r~~~l~~~v~ipD~Fm~rv~~~~~w 348 (808)
|||.+||||.|+||++|||||++||++|...... ..+..++|+||+|+|.||++|++|++|
T Consensus 220 qGG~tRRGA~mv~L~vdHPDI~eFI~~K~~e~~k~~~l~~~~~~~d~~~~~~~~v~~~n~N~SV~vtD~FM~aV~~d~~~ 299 (953)
T PRK06556 220 SGGATRRAAKMVILDVDHPDIEEFIETKAKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVSDEFMRAVENDGEF 299 (953)
T ss_pred cCCCccCcceEEEecCCCccHHHHHHhcccchhhhhhhhhcccccccccccccccccccccceEEECHHHHHHHHcCCCe
Confidence 9985699999999999999999999999743110 013457789999999999999999999
Q ss_pred EEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecC
Q 003602 349 SLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNL 428 (808)
Q Consensus 349 ~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNl 428 (808)
.|++|.+ |+..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+|||
T Consensus 300 ~L~~~~~----------------------g~v~~~v~AreLw~~I~~~aw~tGdPgi~F~D~iNr~~~~~~~g~I~aSNp 357 (953)
T PRK06556 300 GLRARTD----------------------GEVIETVDAKELFRKIAEAAWECADPGIQYDDTINDWHTCPESGRINASNP 357 (953)
T ss_pred EEecccc----------------------CceeeeeeHHHHHHHHHHHHHHhCCCeEEechhhhhhCCCcccCceEeecC
Confidence 9999863 567889999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 003602 429 CTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVE 508 (808)
Q Consensus 429 C~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~ 508 (808)
|+||+++. ..+|||+||||.+|+.. +..|||+.|+++|+++||+||+|||.+.||+|
T Consensus 358 C~E~~l~~----~~sCNLgSINL~~fv~~-------------------~~~fD~~~l~~aV~~avr~LD~vId~~~yP~~ 414 (953)
T PRK06556 358 CSEYMFLD----NSSCNLASLNLMKFLRD-------------------DGTFDVESFRHAVELVITAMEISICFADFPTE 414 (953)
T ss_pred ccccccCC----cccccceeeEHHHhhcc-------------------cCccCHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence 99999874 24899999999999864 24699999999999999999999999999999
Q ss_pred HHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcc-CCCCc
Q 003602 509 TARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSK-GILQP 587 (808)
Q Consensus 509 ~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~-G~l~~ 587 (808)
++++.++++|+||||+|||||+|+++|++|+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+|.. |.+..
T Consensus 415 ~i~~~~~~~R~IGLGvmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s~~~~~~v~~~ 494 (953)
T PRK06556 415 KIARNTRAFRQLGLGYANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRK 494 (953)
T ss_pred HHHHHHHhccchhhhhhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998754 33322
Q ss_pred --cccCC------CC-----CCcccHHHHHHHHHhcCCccccccccCCCcchhhccCC-CccccccccceeeEEc-ccCc
Q 003602 588 --DMWGV------NP-----SDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIYSRRV-LSGE 652 (808)
Q Consensus 588 --d~~~~------~~-----~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~-s~gieP~~s~~y~R~~-~~G~ 652 (808)
+.|.. .+ ....+|++|++.+++||+|||+++|||||||||+|+|+ |+||||+|+++|.|++ ..|+
T Consensus 495 h~~~~~~~~~~~~~~~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~fa~v~~rk~~~~G~ 574 (953)
T PRK06556 495 HAAANDAIRPLGEVDAALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFALVKYKKLVGGGS 574 (953)
T ss_pred hhhhhhhhhhhccCchhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccceeeeeeEEeccCce
Confidence 21211 11 12457999999999999999999999999999999998 9999999999988874 5788
Q ss_pred eEEeChHHHHHHHHcCCCcHHHhhhh--hccCCcccccCCCChHHHhhhhchh-------ccChHHHHHHHHHhCCcccc
Q 003602 653 FVVVNKHLLHDLTEMGLWSPIIKNKI--IYDDGSVQKIPQIPEELKAIYKTVW-------EIKQKTLVDMAVDRGCYIDH 723 (808)
Q Consensus 653 ~~~vn~~l~~~L~~~g~~~~~~~~~i--~~~~Gsv~~i~~lp~~~k~~y~tA~-------ei~~~~~i~~~a~~Q~~vDQ 723 (808)
|.+||++|.+.|+++|+|++++.+.+ +..+|+++++|.||++.+++|+||+ ||+|++||+|+|++||||||
T Consensus 575 ~~~vN~~~~~~L~~~G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~hI~m~Aa~Q~fID~ 654 (953)
T PRK06556 575 MKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMGHVRMMAAVQPFLSG 654 (953)
T ss_pred eEEecHHHHHHHHHcCCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHHHHHHHHHHhhhccc
Confidence 99999999999999999998865432 4578999999999999999999999 99999999999999999999
Q ss_pred ccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCccccccccc
Q 003602 724 SQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKF 769 (808)
Q Consensus 724 s~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~ 769 (808)
|||+|||+++ ++.++|.++|++|||+||||++||....+..++...
T Consensus 655 aiSkTvnlp~~at~edv~~~y~~Awk~GlKgit~YRdgsk~~qvL~~ 701 (953)
T PRK06556 655 AISKTVNMPEDATVEDIEEVYLEGWKLGLKALAIYRDNCKVGQPLNT 701 (953)
T ss_pred ccceEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEcCCCcccceeec
Confidence 9999999996 789999999999999999999999877776666544
No 26
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=100.00 E-value=2.7e-128 Score=1094.29 Aligned_cols=454 Identities=62% Similarity=1.007 Sum_probs=441.3
Q ss_pred HHHHHHHHHhhhccCChHHHHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHhcC
Q 003602 167 PQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAG 246 (808)
Q Consensus 167 pq~~~~RvA~~l~~~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gG 246 (808)
||++|||||++++..+.+++++||++|++++|+||||+|+|+|++++||+||||+.+ +||++||+++++++++++|.||
T Consensus 1 pq~~~~rvA~~la~~~~~~~~~fy~~l~~~~~~patp~l~naG~~~~~lssCfl~~v-~Ds~e~i~~~~~~~~~l~~~gg 79 (460)
T cd01679 1 PQDRLMRVALGLASGDLEWAKEFYDLLSKQRFTPATPTLFNAGTPRGQLSSCFLLTV-DDSLESIYDTIKECAQLSKIGG 79 (460)
T ss_pred ChHHHHHHHHHHhcCCHHHHHHHHHHHHcCCeecCCHHhhcCCCCCCCcccccCCCC-CCCHHHHHHHHHHHHHHhhcCC
Confidence 899999999999988999999999999999999999999999999999999999987 7999999999999999999999
Q ss_pred CcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCccccccc
Q 003602 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRAR 326 (808)
Q Consensus 247 GiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~ 326 (808)
|||+|+|+|||+|++|+|++|.|+|||||+++||+++.+++||| +||||.|+||++|||||++||++|++.|+++.|++
T Consensus 80 GvG~~~s~iRp~G~~i~~~~g~ssG~v~~~~~~~~~~~~i~qgg-~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~~~r~~ 158 (460)
T cd01679 80 GIGLNLSNIRATGSPIRGTNGASNGVIPFLKLLNDTARYVDQGG-QRKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRAR 158 (460)
T ss_pred EEEEeccccCCCCCcccCCCCCCCChhhHHHHHHHHHHHHHcCC-ccccceEEEEeCCCCcHHHHHHHhhccCchhhHhh
Confidence 99999999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred ccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCccee
Q 003602 327 DLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYML 406 (808)
Q Consensus 327 ~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~ 406 (808)
++|+||||||+|||+|+ |+||++|++++|+||+|||+
T Consensus 159 ~~n~~v~i~D~Fm~~v~-------------------------------------------r~l~~~I~~~~~~tG~P~i~ 195 (460)
T cd01679 159 DLFYGVWIPDLFMERVE-------------------------------------------RDLWRKILESQFETGYPYIL 195 (460)
T ss_pred cCceeeeeCHHHHHHHH-------------------------------------------HHHHHHHHHHHHHhCCcHHH
Confidence 99999999999999998 89999999999999999999
Q ss_pred ehhhHhhhCCCCCCCceeeecCCcccccCCC-----CCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCC
Q 003602 407 FKDTCNKKSNQQNLGTIKSSNLCTEVIQYTS-----PTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFD 481 (808)
Q Consensus 407 f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~-----~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD 481 (808)
|+|++|+++|+++.|+|++||||+||+|++. ++++++|||+||||++|++
T Consensus 196 f~D~~N~~~~~~~~~~I~~sNpC~Ei~l~~~~~~~~~~~~~~CnL~sinL~~~v~------------------------- 250 (460)
T cd01679 196 FKDTCNRKNPQKHLGTIKSSNLCTEILQPTSPSEDEPGEDAVCNLASINLGNFVT------------------------- 250 (460)
T ss_pred hhHHHHhcCCcccCCeEEeeccccccccCCccccccCCCcceeecHHhHHHHHhC-------------------------
Confidence 9999999999999999999999999999988 6788999999999999973
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003602 482 FEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRT 561 (808)
Q Consensus 482 ~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~a 561 (808)
|+.|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||.|+|+|+++
T Consensus 251 ~~~l~~~v~~avr~lD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~a 330 (460)
T cd01679 251 FEKLEEVVKLAVRALDNVIDLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKA 330 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHhcCcccccchHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCcccccccc
Q 003602 562 SSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 641 (808)
Q Consensus 562 S~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s 641 (808)
|++||+|+| |+|||+++|||||||||+|+|+|+||||+|+
T Consensus 331 S~~LA~e~G----------------------------------------G~RNs~l~aiaPTgs~S~l~g~S~gieP~~a 370 (460)
T cd01679 331 SCELAKERG----------------------------------------GLRNSLLLAIAPTASISQILGATPSIEPITS 370 (460)
T ss_pred HHHHHHHhC----------------------------------------CccccceeeeCCccHHHHhcCCCCCcCcccc
Confidence 999999999 8899999999999999999999999999999
Q ss_pred ceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCcc
Q 003602 642 NIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYI 721 (808)
Q Consensus 642 ~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~v 721 (808)
++|.|++.+|+|.++|++|.+++.+.| +|+|||||+|+++|+|+|++||||
T Consensus 371 ~~~~R~~~~g~~~~~n~~l~~~~~~~g-----------------------------~f~ta~di~~~~~i~~~a~~Q~~v 421 (460)
T cd01679 371 NIYVRRVLSGEFPVVNPHLEKDLWEYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHI 421 (460)
T ss_pred ceeEEEccCCcEEEECHHHHHHHHHcC-----------------------------ccccHHhCCHHHHHHHHHHHccCc
Confidence 999999999999999999988876543 699999999999999999999999
Q ss_pred ccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecC
Q 003602 722 DHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRS 760 (808)
Q Consensus 722 DQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~ 760 (808)
|||||+|+|+++ .+.++|.++|++|||+|||| +|||||
T Consensus 422 DqsiS~t~~~~~~~~~~~i~~~~~~a~~~GlK~-~YY~r~ 460 (460)
T cd01679 422 DQGQSLNLFLTPPATTRDLNSLYFYAWKKGLKT-LYYLRT 460 (460)
T ss_pred ccccCceeecCCCCCHHHHHHHHHHHHHcCCCe-EEEeCC
Confidence 999999999997 48999999999999999999 599996
No 27
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=100.00 E-value=1.3e-127 Score=1090.84 Aligned_cols=459 Identities=34% Similarity=0.536 Sum_probs=436.1
Q ss_pred HHHHHHHhcCceecccccccccCC-CCCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCC
Q 003602 187 IKTYHMMSQRWFTHASPTLFNAGT-PRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGT 265 (808)
Q Consensus 187 ~~~Y~~ls~~~~~~atPtl~naGt-~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~ 265 (808)
++||++|++++|+|+||+|+|+|+ +++||+||||++++|||+++|+++++++++++|.|||||+|+|.|||+|++|+|+
T Consensus 2 ~~~~~~l~~~~~~p~tP~l~naG~~~~~~lssCfv~~~~dds~~~I~~~~~~~a~l~k~gGGvG~~~s~iRp~G~~i~~~ 81 (464)
T cd02888 2 DEFFYLLLSQGFIPNSPTLMNAGTGELGQLSACFVLPVEDDSIEGIFDALKEAALIFKRGGGVGYNFSRLRPKGDIVKST 81 (464)
T ss_pred hHHHHHHHcCCeecCChHhhcCCCCCCCCceeeEecCCCCCCHHHHHHHHHHHHHHHhcCCeEEeeccccCCCCCcccCC
Confidence 689999999999999999999999 9999999999998545999999999999999999999999999999999999999
Q ss_pred CCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcC
Q 003602 266 NGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSN 345 (808)
Q Consensus 266 ~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~ 345 (808)
+|+|+|++|||++||+++.+++||| +||||.|+||++|||||++||++|++++++ .|++++|+||+|||+|||+|++|
T Consensus 82 ~g~ssG~v~f~~~~d~~~~~i~qgg-~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~-~~~~~~n~sv~i~D~Fm~~v~~~ 159 (464)
T cd02888 82 GGVASGPVSFMRVFDAATGVIKQGG-TRRGANMGVLDVDHPDIEEFIDAKMKEEKT-VVLQNFNISVAVTDAFMEAVEND 159 (464)
T ss_pred CCCCCChHhHHHHHHHHHHHHHhCC-cccceeEEEEcCCCccHHHHHHHccccCcc-cccccceeEEEeCHHHHHHHHcC
Confidence 9999999999999999999999998 899999999999999999999999988764 57899999999999999999999
Q ss_pred CcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceee
Q 003602 346 GLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKS 425 (808)
Q Consensus 346 ~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~ 425 (808)
++|+||+|+++ .++..+++|+||+||++|++++|+||+||++|+|++|+++|+++.|+|.+
T Consensus 160 ~~w~L~~p~~~-------------------~~~~~~~~v~Arel~~~i~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~i~~ 220 (464)
T cd02888 160 EPWELRNPREP-------------------DTGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTINRWNPLPGLGRINA 220 (464)
T ss_pred CCeEeeCcccc-------------------CCCceeeEeeHHHHHHHHHHHHHHHCCCeEEEhHHHHhhCCccccCceee
Confidence 99999999864 24566899999999999999999999999999999999999999999999
Q ss_pred ecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 003602 426 SNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYY 505 (808)
Q Consensus 426 sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~y 505 (808)
||||+||+|+. .++|||+||||++|+.+. ..+..|||+.|+++|+++||+||+|||.+.|
T Consensus 221 sNpC~Ei~l~~----~~~CnL~SiNL~~fv~~~----------------~~~~~fD~~~l~~~v~~avr~LD~vid~~~~ 280 (464)
T cd02888 221 TNPCGEQPLLP----YESCNLGSINLSKFVKNP----------------FGGASFDFERLREAVRLAVRFLDNVIDVNRY 280 (464)
T ss_pred ccCCcccccCC----CCcccchhhhHHHHhccc----------------CcccccCHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999974 469999999999999651 0113699999999999999999999999999
Q ss_pred CHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCC
Q 003602 506 PVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGIL 585 (808)
Q Consensus 506 p~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l 585 (808)
|+|++++.++++|+||||+|||||+|+++|++|+|+||++++++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+
T Consensus 281 p~~~~~~~~~~~R~iGlG~~Glad~L~~~gi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~ 360 (464)
T cd02888 281 PLPEIAEETKATRRIGLGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKV 360 (464)
T ss_pred ChHHHHHHhhccCceeecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHH
Q 003602 586 QPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLT 665 (808)
Q Consensus 586 ~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~ 665 (808)
+++ ...+|++||++|++||+|||+++|||||+|||+|+|+|+||||+|
T Consensus 361 ~~~-------~~~~w~~l~~~i~~~G~RNs~l~aiAPTgs~S~i~g~s~gieP~~------------------------- 408 (464)
T cd02888 361 IVN-------AKELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPIF------------------------- 408 (464)
T ss_pred hhc-------chhcHHHHHHHHHHhCcchhceeeeCCcHHHHHHhCCCCCcCCCC-------------------------
Confidence 865 245899999999999999999999999999999999999999997
Q ss_pred HcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHH
Q 003602 666 EMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHF 744 (808)
Q Consensus 666 ~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~ 744 (808)
+|+++|+|+|++|||||||||+|+|+++ .+.++|.++|+
T Consensus 409 ----------------------------------------~~~~~i~~~a~~Q~~iDqsiS~tin~~~~~t~~d~~~~y~ 448 (464)
T cd02888 409 ----------------------------------------SPEDHVRMQAALQPWVDGAISKTINLPNDATVEDVEAVYL 448 (464)
T ss_pred ----------------------------------------CHHHHHHHHHHHhccchhhhcceeecCCCCCHHHHHHHHH
Confidence 7899999999999999999999999986 58999999999
Q ss_pred HHHHcCCceEEEEe
Q 003602 745 HAWLRGLKTGMYYL 758 (808)
Q Consensus 745 ~Awk~GlKt~~YY~ 758 (808)
+|||+||||++||.
T Consensus 449 ~aw~~G~K~~t~yR 462 (464)
T cd02888 449 LAWKLGLKGITVYR 462 (464)
T ss_pred HHHHhCCCEEEEeC
Confidence 99999999999993
No 28
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-125 Score=1117.51 Aligned_cols=623 Identities=37% Similarity=0.637 Sum_probs=561.5
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhhhccCCcccCcchhH
Q 003602 42 KVCTGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDV 120 (808)
Q Consensus 42 ~~~~~~~~~itt~ei~~~~~~~a~~~~~-~~p~y~~~A~rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (808)
....+++++++ +.+.++.++..+.. .+|+|+.+|+|++++.+++++...+.. ...++..+. .....+.++..+
T Consensus 4 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 77 (651)
T COG0209 4 RTVIGFYDGIT---IAENLILAALTVIEEDDPDVQRLAARLAGSDLRKEAVRQFGR-FDVLDEKVF--ALVANGYYDQRL 77 (651)
T ss_pred ccccchhcchh---HHHHHhhhhhhhcCccCccHHHHHHHHHHHHHHHHHhccccc-hhhhhhHHH--HHHhhhhhHHHH
Confidence 44567889998 66666666666665 699999999999999999999876553 233333221 234455777777
Q ss_pred HH-HHHHhHHHHhhhhcccccCCCChhhHHHHHHhhcccc-CC-cccCCHHHHHHHHHhhhccCC-----hHHHHHHHHH
Q 003602 121 YD-IIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QG-KVVERPQHMLMRVAVGIHKDD-----IDSAIKTYHM 192 (808)
Q Consensus 121 ~~-~~~~~~~~l~~~i~~~rD~~~~y~g~~~l~~~Yllk~-~g-~~~E~pq~~~~RvA~~l~~~~-----~~~~~~~Y~~ 192 (808)
++ +..++++.+...+.++||..|+|+|+++|+++|++|. ++ +++|+||++|||||+++|..+ +++|++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~rYl~~~~~~~~~~E~~~~~~~~vA~~la~~e~~~~~~~~a~~~y~~ 157 (651)
T COG0209 78 LRLYSREDLDDLNKKILLERDRQFSYAAAKVLYSRYLLKDEDGSEILELPQDLFMRVALLLAQNEAPERRLEWAKEFYDL 157 (651)
T ss_pred HHhhhhhHHHHHHHhhhhcchhhhhHHHHHHHHHhhhcccccccccccCHHHHHHHHHHHhccCCccchhhHHHHHHHHH
Confidence 75 5666899999999999999999999999999999995 44 479999999999999999754 5699999999
Q ss_pred HhcCceecccccccccCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCc
Q 003602 193 MSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGI 272 (808)
Q Consensus 193 ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~~~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~ 272 (808)
|++++|+|+||||+|+|++++|||||||+++.+|+ +|+
T Consensus 158 ~~~~~~~patPtl~n~~~~~~qlssCfv~~~~dd~------------------------------------------sG~ 195 (651)
T COG0209 158 MSSLRFMPATPTLLNGGTPRGQLSSCFVLPVEDDS------------------------------------------SGV 195 (651)
T ss_pred HhcCeeecCCcceecCCCCCCceeeeEEecccCCC------------------------------------------CCc
Confidence 99999999999999999999999999999976777 899
Q ss_pred ccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEec
Q 003602 273 VPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFC 352 (808)
Q Consensus 273 vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~ 352 (808)
|||||+||+++.+|+||| +|+||.|+||++|||||++||++|+++|++..|.++++++++|||+||++++++++|+||+
T Consensus 196 i~~~k~~d~~~~~i~QgG-~R~GA~~v~L~~~HpDi~~fl~~k~~~gde~~r~~~~~~~~~i~d~~~~~~~~~~~~~l~~ 274 (651)
T COG0209 196 VPFMKLLDDAFDAINQGG-VRRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFS 274 (651)
T ss_pred hhHHHHHHHHHHHHhhcC-cCCCCeEEeecCCCccHHHHHHHHhhccccceeeeccccceeecHHHHHHHhcCCceEeeC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhchHHHHHHHHHHH-cCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCC-CCCceeeecCCc
Q 003602 353 PNEAPGLADCWGTEFERLYTKYEK-EGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQ-NLGTIKSSNLCT 430 (808)
Q Consensus 353 P~~~~~L~~~yg~eF~~~Y~~~e~-~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~-~~G~I~~sNlC~ 430 (808)
|++.-++.+.||++|++ |.+++. ++..+++|+||+||.+|++.+++||+||++|+|++|+++|+. +.|+|++||||+
T Consensus 275 P~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~v~Ar~l~~~i~~~~~esG~P~l~f~D~~N~~~~~~~~~g~I~~sNlC~ 353 (651)
T COG0209 275 PRDGYEAPDVYGAEFEE-YAEYEADPGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGGGAIRASNLCS 353 (651)
T ss_pred CcccccccccchhhHHH-HHHHhcCCCeeeeeEcHHHHHHHHHHHHHhcCCCeeEecccccCCCCCcccCceeeccccch
Confidence 99877899999999999 999997 467789999999999999999999999999999999777664 567999999999
Q ss_pred ccccCC-------CCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 003602 431 EVIQYT-------SPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVN 503 (808)
Q Consensus 431 EI~~~~-------~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~ 503 (808)
||+|++ ..+++++|||+||||.+++.. + +.|+++++++||+||+|||++
T Consensus 354 Ei~~~~~~~~~~~~~~~~~~CNL~siNl~~~~~~-----------------------~-~~~~~~v~~~vr~Ld~vid~~ 409 (651)
T COG0209 354 EILQRTKPLSLEQPLGEDASCNLGSINLAKFVKY-----------------------G-DGLAELVAVAVRALDNVIDLN 409 (651)
T ss_pred hhhccccccccccCCCCceeeechhhhHHHHHhc-----------------------c-hhHHHHHHHHHHHHHHHHHhc
Confidence 999888 557889999999999999852 2 339999999999999999999
Q ss_pred CCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccC
Q 003602 504 YYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKG 583 (808)
Q Consensus 504 ~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G 583 (808)
.||+|+++++|.++|+||||+|||||+|+++|++|+|+||++|++++||.|+|+|+++|++||+|+|+|+.|++|.|++|
T Consensus 410 ~~p~~~~~~~n~~~R~iGlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g 489 (651)
T COG0209 410 PYPVPEAERANAESRAIGLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARG 489 (651)
T ss_pred CCCCHHHHHHhhhcCccccchhhHHHHHHhCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHH
Q 003602 584 ILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHD 663 (808)
Q Consensus 584 ~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~ 663 (808)
.++.+.+... ...++|+.||+++++||+|||+++|||||||||+|+|+|+||||+|+++|.|....|.+.++++++.++
T Consensus 490 ~~~~~~~~~~-~~~~~w~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~~~~~r~~~~g~~~~~~~~l~~~ 568 (651)
T COG0209 490 ILPIDYPRLF-GITEDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFED 568 (651)
T ss_pred ccccchhhhc-cccccHHHHHHHHHHhCcccccceeeCCccchhHhhCCCCCcCcChhheeeEecccceEEEeCcHHHHH
Confidence 9987763332 112899999999999999999999999999999999999999999999999988899999999998766
Q ss_pred HHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHH
Q 003602 664 LTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSL 742 (808)
Q Consensus 664 L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~ 742 (808)
+.. .|..|++|+|.++|+|+|++|+|||||||+|||+++ .+..++..+
T Consensus 569 ~~~-------------------------------~~~~a~~i~~~~~i~~~a~~q~~iDq~iS~tl~~~~~~~~~d~~~~ 617 (651)
T COG0209 569 LLA-------------------------------YYGLAYEIDPLWHIDMQAAAQRWIDQGISKTLNLPNTATTKDLNKA 617 (651)
T ss_pred HHH-------------------------------hhhhhhccChHHHHHHHHHhhcccccceeeeecCCCCCCHHHHHHH
Confidence 543 344499999999999999999999999999999995 678899999
Q ss_pred HHHHHHcCCceEEEEecCccccccccccc
Q 003602 743 HFHAWLRGLKTGMYYLRSRAAADAIKFTV 771 (808)
Q Consensus 743 ~~~Awk~GlKt~~YY~r~~~~~~~~~~~~ 771 (808)
|++||++|+|| +||+|+++..+..++.+
T Consensus 618 ~~~Aw~~g~K~-~yY~~~~~~~~~~~~~~ 645 (651)
T COG0209 618 YLYAWKLGLKT-TYYRRTSQAAQVLTVVL 645 (651)
T ss_pred HHHHHHcCCce-EEEecCccccccccccc
Confidence 99999999999 99999999888766653
No 29
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.6e-124 Score=1156.67 Aligned_cols=481 Identities=27% Similarity=0.435 Sum_probs=435.5
Q ss_pred HHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhh
Q 003602 237 ECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRK 316 (808)
Q Consensus 237 ~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~ 316 (808)
++++++|. |+|+|||+|||+|++|+|++|.|+||||||++||+++++|+||| +||||.|+||++|||||++||++|+
T Consensus 747 E~~~~~k~--G~G~~fS~LRp~Gs~I~~t~g~asGpvsfm~lfd~~~~~v~QGG-~RRGA~m~yL~~~HPDI~eFI~aK~ 823 (1740)
T PRK08332 747 ENGMIFVH--NTGLNFSKLRPEGDIVGTTTGAASGPVSFMHLIDAVSDVIKQGG-VRRGANMGILEIWHPDIEKFIHAKE 823 (1740)
T ss_pred hheEEeec--cEEecccccCCCCCcccCCCCCCCChHHHHHHHHHHHHHHHhcC-CCcCCeEEEEcCCCccHHHHHHhhh
Confidence 34445554 99999999999999999999999999999999999999999999 8999999999999999999999996
Q ss_pred hc-CcccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHH
Q 003602 317 NH-GKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILK 395 (808)
Q Consensus 317 ~~-g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~ 395 (808)
.+ |+. +.+++|++|.|+|+||++|++|++|+||+|++ |...++|+||+||.+|++
T Consensus 824 ~~~g~~--~l~~fNlsv~v~D~FMeaV~~d~~w~L~~P~~----------------------g~~~~~v~AreLw~~I~~ 879 (1740)
T PRK08332 824 KNIGTN--VLSNFNISVGIWEDFWEALKEGKKYPLINPRT----------------------GEVVKEIDPKSLFEELAY 879 (1740)
T ss_pred ccCCcc--hhccccccccchHHHHHHHHcCCCeEeecCCC----------------------CceeeEEcHHHHHHHHHH
Confidence 54 433 35778888888899999999999999999984 456789999999999999
Q ss_pred HHHhhCCcceeehhhHhhhCCCCC--CCceeeecCCcc----------------c-------------------------
Q 003602 396 SQIETGTPYMLFKDTCNKKSNQQN--LGTIKSSNLCTE----------------V------------------------- 432 (808)
Q Consensus 396 ~~~etG~P~i~f~D~~Nr~~~~~~--~G~I~~sNlC~E----------------I------------------------- 432 (808)
++|+||+|||+|+|++|+.||+++ .|+|.+||||.- .
T Consensus 880 ~a~etGePgilF~D~iN~~n~~~~~~~g~I~aSNpCVtgdt~v~T~~G~~~~~~l~~~~~~~g~~~~~~~~g~~~~g~~~ 959 (1740)
T PRK08332 880 MAWAKADPGVIFFDVINRRNVLKEAKGGPIRATNPCVVGDTRILTPEGYIKAEELFSLAKERGKKEAVAVEGIAEEGEPY 959 (1740)
T ss_pred HHHHhCCCcEEEhhhhhhhCCCccccCCeEEeecCCcCCCceeecccchHHHHHHHHHHHhcCcceeeeeccccccCCcc
Confidence 999999999999999999999887 589999999951 0
Q ss_pred ------ccC-----------------------------------------------------------------------
Q 003602 433 ------IQY----------------------------------------------------------------------- 435 (808)
Q Consensus 433 ------~~~----------------------------------------------------------------------- 435 (808)
+.+
T Consensus 960 ~~~~e~v~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~tG~k~v~rl~T~~G~~i~~T~dH~~lt~~gW~~~~eLk~GD~ 1039 (1740)
T PRK08332 960 AYSVEILLPGEEEVKYETVHGKALAIADPVAVPAYVWKVGKKKVARVRTKEGYEITATLDHKLMTPEGWKEVGDLKPGDK 1039 (1740)
T ss_pred cccceeeccccccccccccCCcccccccccccccceeecCcceEEEEEecCCcEEEecCCceeeecccCEEHhHcCCCCE
Confidence 000
Q ss_pred ------------C----------------------------------C--------------------------------
Q 003602 436 ------------T----------------------------------S-------------------------------- 437 (808)
Q Consensus 436 ------------~----------------------------------~-------------------------------- 437 (808)
. .
T Consensus 1040 i~lp~~~~~~~~g~~~~~e~~a~LLG~LiGDGsl~~~~k~~~~~~~~~~ee~va~~v~~~l~~~fG~~~~~~r~~~~~~i 1119 (1740)
T PRK08332 1040 ILLPRFEVEEDFGSESIGEDLAFVLGWFIGDGYLNVNDKRAWFYFNAEKEEEIAWKIREILAKHFGIKAEPHRYGNQIKL 1119 (1740)
T ss_pred EEecCccCccccCccccchHHHHHHHHhhcCceeecCCceeEEEecCcchHHHHHHHHHHHHHHhCCcccccccccceee
Confidence 0 0
Q ss_pred ---------------------C----------------------------------------------------------
Q 003602 438 ---------------------P---------------------------------------------------------- 438 (808)
Q Consensus 438 ---------------------~---------------------------------------------------------- 438 (808)
|
T Consensus 1120 ~~r~~~~~~Lk~l~~~~eKrIPe~vfrl~~~~~~aFLrGLFDaDG~V~~~~~I~lsS~s~~Ll~dVq~LLlrLGI~S~I~ 1199 (1740)
T PRK08332 1120 GVRGEAYRWLESIVKTNEKRVPEIVYRLKPREIAAFLRGLFSADGYVDNDMAIRLTSKSRELLRDVQDLLLLFGILSKIY 1199 (1740)
T ss_pred cccHHHHHHHHHhccccccCCCHHHHhCCHHHHHHHHHHHcccCCccccCceEEEEeCCHHHHHHHHHHHHhCCCeeEEE
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q 003602 439 -------------------------------------------------------------------------------- 438 (808)
Q Consensus 439 -------------------------------------------------------------------------------- 438 (808)
T Consensus 1200 ~~~~~~~~~l~d~~gg~k~y~~~~~y~LiIsg~~~~~F~e~IGF~~~K~~rl~l~~~~~~~~~~~V~~ve~~G~E~VYd~ 1279 (1740)
T PRK08332 1200 ERPYKSEFKYTTKDGEERTYRAEGYYELVIANYSRKLFAEKIGFEGYKMEKLSLQKTKIDEPIVTVESVEVLGEEIVYDF 1279 (1740)
T ss_pred eccccccccccCCCCcccccccCceEEEEEcchHHHHHHHHhccchhhHHHHhhcccccccceeEEEEeeecCccceeec
Confidence
Q ss_pred -----------------------CcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHH
Q 003602 439 -----------------------TETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTEN 495 (808)
Q Consensus 439 -----------------------~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~ 495 (808)
.++++|||+||||++||... +.++..|||++|+++|+++||+
T Consensus 1280 t~p~~h~f~~nG~~~~~~GEqpL~py~sCNLgSINL~~fV~~~---------------~~g~~~fD~e~l~~~V~~avR~ 1344 (1740)
T PRK08332 1280 TVPEHHSYISNGFMSHNCGEEPLYEYESCNLASINLAKFVKYD---------------ENGKPYFDWDEYAYVIQKVAKY 1344 (1740)
T ss_pred CCCccccccccceEecCCCccCCCCCCeeecHHHHHHHHhccc---------------ccCccccCHHHHHHHHHHHHHH
Confidence 01347888888888877531 1123469999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 003602 496 LNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETY 575 (808)
Q Consensus 496 Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f 575 (808)
||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++||++|+++|+++|++||+|+|+||.|
T Consensus 1345 LDnVID~~~yPlp~i~~~~~~~R~IGLGvmGLad~L~~lGI~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~f 1424 (1740)
T PRK08332 1345 LDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLY 1424 (1740)
T ss_pred HHHHHHhcCCccHHHHHHhhhcCCcccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEE
Q 003602 576 HGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVV 655 (808)
Q Consensus 576 ~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~ 655 (808)
++|+|++|+++++.|........+|++|+++|+++|+|||+++|||||||||+|+|+|+||||+|+++|.|++..|+|.+
T Consensus 1425 e~S~y~~G~l~~~~~~~~~~~~~~W~~L~e~I~k~GlRNs~ltaIAPTGSiSliag~SsGIEPifA~~y~R~v~~G~~~~ 1504 (1740)
T PRK08332 1425 EKTEYPKGELPVEGFYHPEIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYY 1504 (1740)
T ss_pred ccCchhcccccccccccchhccccHHHHHHHHHHhCcchheeeccCCCcchhhhcCCCCccccchhheeEEeccCceEEE
Confidence 99999999999886643322245899999999999999999999999999999999999999999999999999999999
Q ss_pred eChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-C
Q 003602 656 VNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-P 734 (808)
Q Consensus 656 vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~ 734 (808)
+|++|.+.|+++|+|+++++.+|....|++|+++.+|++++++|+||+||+|.+||+|||++|||||||||+|||+++ .
T Consensus 1505 ~np~~~~~l~~~g~~~~e~~~~I~~~~gsvq~~~~lpe~~~~~F~TA~DI~~~~hI~mqAa~Qk~VDqaISKTiNlP~da 1584 (1740)
T PRK08332 1505 VDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHILAQANIQMWLTDSASKTINMINEA 1584 (1740)
T ss_pred ecHHHHHHHHHcCCCcHHHHHHHHHhCCCccCcccCChhHhhhcccHhcCCHHHHHHHHHHHhhhccccccceeecCCCC
Confidence 999999999999999999999998888999999999999999999999999999999999999999999999999996 6
Q ss_pred ChhHHHHHHHHHHHcCCceEEEEec
Q 003602 735 NFGKLTSLHFHAWLRGLKTGMYYLR 759 (808)
Q Consensus 735 ~~~~l~~~~~~Awk~GlKt~~YY~r 759 (808)
+.+||..+|++||++||||+|||.-
T Consensus 1585 t~eDv~~iY~~Awk~GlKGiTvYRd 1609 (1740)
T PRK08332 1585 TVEDVKAAYLIAHFLGCKGVTVYRD 1609 (1740)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 8999999999999999999988843
No 30
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=9e-123 Score=1104.33 Aligned_cols=557 Identities=23% Similarity=0.396 Sum_probs=495.1
Q ss_pred CHHHHHHHHHhhhcc--------CChHHHHHHHH----HHhcCceecccccccccCC-----------------------
Q 003602 166 RPQHMLMRVAVGIHK--------DDIDSAIKTYH----MMSQRWFTHASPTLFNAGT----------------------- 210 (808)
Q Consensus 166 ~pq~~~~RvA~~l~~--------~~~~~~~~~Y~----~ls~~~~~~atPtl~naGt----------------------- 210 (808)
+-.++|-|+|.+... ...+.+..||+ +|.+|++.|+||+|||.|+
T Consensus 105 s~~q~~~r~~~~~~~~g~~~gyf~~~~da~~f~de~~~~l~~q~~apnSP~wfN~Gl~~~yg~~~~~~~~~~~d~~~~~~ 184 (1220)
T PRK07562 105 SAKQVFDRLAGCWTYWGWKGGYFDSEEDARAFYDELRYMLATQMVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDPKTGKL 184 (1220)
T ss_pred cHHHHHHHHHHHHHHHHhhCCccCCHHHHHHHHHHHHHHHHhcCcCCCCcceeeccccccccccCccccccccccccccc
Confidence 567889999988652 24578889999 9999999999999999997
Q ss_pred -------CCCcccccccccccCCCHH---HHHHHHHHHHHHHHhcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHH
Q 003602 211 -------PRAQLSSCFLVCMKDDSIE---GIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFN 280 (808)
Q Consensus 211 -------~~~~lsSCfl~~~~~DS~~---~I~~~~~~~a~isk~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~ 280 (808)
.++|++||||+++ +||++ +||++++++|+|+|+|||+|+|||+|||+|++|+| +|+|||||||||+||
T Consensus 185 ~~~~~~y~~pQlsSCFI~~V-~Dsl~~~~gI~d~~~~~A~l~K~GGGtG~nfS~LR~~Ge~Isg-gG~SSG~vsFmkifD 262 (1220)
T PRK07562 185 TKSKSAYEHPQPHACFIQSV-EDDLVNEGGIMDLWVREARLFKYGSGTGSNFSNLRGEGEKLSG-GGKSSGLMSFLKIGD 262 (1220)
T ss_pred cccccccCCCCcceEEeccc-CCcccccchHHHHHHHHHHHHhcCCeEeecccccCCCCCcCCC-CCcCCChhhHHHHHH
Confidence 5889999999997 79994 99999999999999999999999999999999998 799999999999999
Q ss_pred HHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhh-----------------------------cCcccc--------
Q 003602 281 DTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKN-----------------------------HGKEEH-------- 323 (808)
Q Consensus 281 ~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~-----------------------------~g~e~~-------- 323 (808)
+++.+|+|||++||||.|+||++|||||++||++|++ .|+++.
T Consensus 263 ~aa~aIkQGG~tRRGA~mv~LdvdHPDIeeFI~~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~~Np 342 (1220)
T PRK07562 263 RAAGAIKSGGTTRRAAKMVIVDIDHPDIEEFIDWKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPAKNP 342 (1220)
T ss_pred HHHHHHHhCCCCccCceEEEecCCcccHHHHHHhccchhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCccccH
Confidence 9999999999669999999999999999999999974 121110
Q ss_pred --------------------------------------------------cccccceecccCHHHHHHHHcCCcEEEecC
Q 003602 324 --------------------------------------------------RARDLFYALWVPDLFMERVQSNGLWSLFCP 353 (808)
Q Consensus 324 --------------------------------------------------r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P 353 (808)
...++|+||+|+|+||++|++|++|.|++|
T Consensus 343 aLk~aI~~Ak~~~vP~~~I~RvI~~A~qg~~~~~f~~yd~~~~~e~y~tv~~qN~N~SV~VtDeFM~aVe~d~~w~L~~p 422 (1220)
T PRK07562 343 ALKREIKAAKKALVPENYIKRVIQFARQGYTDIDFPTYDTDWDSEAYLTVSGQNSNNSVRVTDEFLRAVENDGDWNLTAR 422 (1220)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhcccccccccccccccccchhcccccccccceeccCHHHHHHHHCCCCeeeecc
Confidence 125788999999999999999999999998
Q ss_pred CCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccc
Q 003602 354 NEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVI 433 (808)
Q Consensus 354 ~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~ 433 (808)
.+ |+..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||+||+
T Consensus 423 ~~----------------------gkv~ktV~AReLw~kI~~aawetGdPgI~F~DtiN~~~~~~~~G~I~aSNPCsEi~ 480 (1220)
T PRK07562 423 TD----------------------GKVAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGPIRASNPCSEYM 480 (1220)
T ss_pred CC----------------------CceeeEeeHHHHHHHHHHHHHHHCCceEEEehhhhhcCCCccCCeeEeecCccccc
Confidence 74 56789999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003602 434 QYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRS 513 (808)
Q Consensus 434 ~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~ 513 (808)
++. ..+|||+||||.+|+.+ ++..||++.|+++|++++++||++||.+.||++++++.
T Consensus 481 lld----~~aCNLaSINL~~Fv~~------------------~~~~fD~e~l~~avrl~t~~LDi~id~~~yP~~ei~~~ 538 (1220)
T PRK07562 481 FLD----DTACNLASLNLLTFRDE------------------DTKRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIAEL 538 (1220)
T ss_pred CCC----CCcccchhhhHHHHhcC------------------CCCccCHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 763 23799999999999864 22359999999999999999999999999999999999
Q ss_pred hhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcC------------c
Q 003602 514 NLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPV------------S 581 (808)
Q Consensus 514 ~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~------------~ 581 (808)
++++|+||||+|||||+|+++||||+|+||++|+++||+.|+++|+++|++||+|+|+||.|++|+| +
T Consensus 539 ~~~~R~IGLGvmGLadlL~~lGipYdS~EAr~la~~I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~lrv~r~h~~aa 618 (1220)
T PRK07562 539 SYEFRTLGLGYANIGGLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYEKNADHMLRVIRNHRRAA 618 (1220)
T ss_pred HhcCCCeeehHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccChhhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 3
Q ss_pred cCCCC-ccccCCCC---------------CCcccHHHHHHHHHhcCCccccccccCCCcchhhccCC-Ccccccccccee
Q 003602 582 KGILQ-PDMWGVNP---------------SDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGN-NECFEPYTSNIY 644 (808)
Q Consensus 582 ~G~l~-~d~~~~~~---------------~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~-s~gieP~~s~~y 644 (808)
.|.++ ++.++..| ...++|++|++.+++||+|||++++||||||||+|+|+ |+||||+|+++|
T Consensus 619 ~g~~~gy~~~~~~p~~~~~~~~~~~~l~~~a~~~W~~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIEP~fAlv~ 698 (1220)
T PRK07562 619 HGESEGYEGLSVNPVPLDHANCPDQDLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVK 698 (1220)
T ss_pred ccccccccccccCcccccccccchhhhccchhhhHHHHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcccCccceE
Confidence 44432 33343322 12468999999999999999999999999999999999 999999999998
Q ss_pred eEEcc-cCceEEeChHHHHHHHHcCCCcHHHhhhhh--ccCCcccccCCCC-----------------------------
Q 003602 645 SRRVL-SGEFVVVNKHLLHDLTEMGLWSPIIKNKII--YDDGSVQKIPQIP----------------------------- 692 (808)
Q Consensus 645 ~R~~~-~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~--~~~Gsv~~i~~lp----------------------------- 692 (808)
.|+.. +|+|.+||+++.++|+++|+|++++.+.+. ..+|+++++|.+|
T Consensus 699 ~kkl~gGg~f~ivN~~l~~~L~~lG~~~~~i~~i~~~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~~~fdi~~ 778 (1220)
T PRK07562 699 FKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALKSAFDIKF 778 (1220)
T ss_pred EEEeccceeEEEEcHHHHHHHHHcCCCHHHHHHHHHHhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhhhhhhhhh
Confidence 88755 569999999999999999999987765442 2578887776664
Q ss_pred -------------------------------------------------------------hHHHhhhhchh--------
Q 003602 693 -------------------------------------------------------------EELKAIYKTVW-------- 703 (808)
Q Consensus 693 -------------------------------------------------------------~~~k~~y~tA~-------- 703 (808)
++...+|.+|.
T Consensus 779 ~fn~~~lg~~f~~~~lg~~~~~~~~~~f~ll~~~g~t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~~g~~g~r 858 (1220)
T PRK07562 779 AFNKWTLGEDFCKDTLGIPAEQLNDPSFDLLEHLGFSKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANPCGKIGKR 858 (1220)
T ss_pred hhcccccchhhhhhcccCcHhhhccccchhhhhcccchhhHHHhhhhcccccccccCcccchhhhhhccccccccccccc
Confidence 34445788884
Q ss_pred ccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHHcCCceEEEEecCcccccccc
Q 003602 704 EIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIK 768 (808)
Q Consensus 704 ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk~GlKt~~YY~r~~~~~~~~~ 768 (808)
+|++++||+|+|+.|||||.+||+|||+|+ +|++|+.++|+.||++|||+++.|.-..+.+++..
T Consensus 859 ~i~~~~Hi~M~aA~Q~fis~aISKTvNmP~~ATveDv~~~y~~a~~lG~KaitlYRdgsk~~qpL~ 924 (1220)
T PRK07562 859 YLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSKLSQPLN 924 (1220)
T ss_pred cCCHHHHHHHHHHhhhhccccccceeeCCCCCCHHHHHHHHHHHHHhCCcceEEEecCCccccccc
Confidence 899999999999999999999999999995 89999999999999999999999975555555443
No 31
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=100.00 E-value=2e-83 Score=748.65 Aligned_cols=492 Identities=17% Similarity=0.140 Sum_probs=409.9
Q ss_pred HHHHhhccc-cCCcccCCHHHHHHHHHhhhcc--C-------------ChHHHHHHHHHHhcCceecccccccccCCC--
Q 003602 150 TLERSYLLK-VQGKVVERPQHMLMRVAVGIHK--D-------------DIDSAIKTYHMMSQRWFTHASPTLFNAGTP-- 211 (808)
Q Consensus 150 ~l~~~Yllk-~~g~~~E~pq~~~~RvA~~l~~--~-------------~~~~~~~~Y~~ls~~~~~~atPtl~naGt~-- 211 (808)
+++++|... .+|.. |+++++..||-.+... . ..+++.++|+++.++++.|++++|+-+||+
T Consensus 4 v~~RTYsR~~~~g~r-E~W~etv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~k~lPsGR~Lw~~Gt~~~ 82 (658)
T cd01676 4 TYYRTYSRPKEEGQN-ENWDQTVERVVEGTFELWERHLGNPLRWLNEKAEEEAEELRSLIFELKALPPGRGLWLGGTDYS 82 (658)
T ss_pred eEEEeccccCCCCCc-cChHHHHHHHHhcchhhchhhccccchhhhhhhhHHHHHHHHHHHhcccCCCccchhhcCchhh
Confidence 456788854 55644 9999999999887542 1 135678899999999999999999999985
Q ss_pred --C--Ccccccccccc----------------------------------------------------------------
Q 003602 212 --R--AQLSSCFLVCM---------------------------------------------------------------- 223 (808)
Q Consensus 212 --~--~~lsSCfl~~~---------------------------------------------------------------- 223 (808)
+ ..+.+|....+
T Consensus 83 ~~~~~~~~~NC~f~~~~~~~~~f~~~~~llm~G~GvG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (658)
T cd01676 83 RQRRFASLNNCAFVSTEDVVYPFVFLMDLLMQGCGVGFDTAGSNISQIPRPLQEIKVQRVNRTEKGGIQNNVETYDPTQH 162 (658)
T ss_pred hcccccccccceeeccccchhhHHHHHHHHhcCCcCCeEecccchhhCCCcccccceeeccccccccccccceeeccCCc
Confidence 1 13455544332
Q ss_pred -----cCCCHHHHHHHHHHHHHHHH-hcCCcceeeeeecCCCCcccCCCCcccCcccHHHHHHHH---------------
Q 003602 224 -----KDDSIEGIYDTLKECAIISK-SAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT--------------- 282 (808)
Q Consensus 224 -----~~DS~~~I~~~~~~~a~isk-~gGGiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~--------------- 282 (808)
++||+|||.+++..+..+.. ..-++++|||.|||+|++|+|++|+||||+||+++|+.+
T Consensus 163 ~~~~~v~Ds~egw~~~~~~l~~~~~~~~~~~~~d~S~iRP~G~~lkg~gG~asGp~~~~~~~~~~~~iL~~~~G~~L~~i 242 (658)
T cd01676 163 TWIIKVPDSREGWVKSVQLLLDLYFNPAQTLIFDYSDIRPAGERLKGFGGIASGPEPLKKLHKAIAAILNDRSGKPLTSV 242 (658)
T ss_pred eeEEEcCCCHHHHHHHHHHHHHhcccCCCceEEecccCCCCCCcccCCCCCCCCcHHHHHHHHHHHHHHhhhcccccchh
Confidence 36899999999887655543 344789999999999999999999999999999999986
Q ss_pred ---------HHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHHHHcCCcEEEecC
Q 003602 283 ---------ARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCP 353 (808)
Q Consensus 283 ---------~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P 353 (808)
+.+|.||| .||||.|. ++||||++||++|+..+...+ .+|.+..+
T Consensus 243 d~~di~n~~~~~v~~Gg-~RR~A~M~---~~HpDi~eFi~aK~~~~~~~n----------------------~~~~~~~n 296 (658)
T cd01676 243 DIVDLMNLIGVCVVSGN-VRRSAEIA---FGQPEDEDFADLKQYQWNPGR----------------------REHGWASN 296 (658)
T ss_pred HHHHHHhhhhcEEeecC-cccceecC---CCCccHHHHHHhcccCCcccc----------------------chhheecc
Confidence 55888998 89998775 899999999999986543321 12222222
Q ss_pred CCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCCC------CCCCceeeec
Q 003602 354 NEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQ------QNLGTIKSSN 427 (808)
Q Consensus 354 ~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~------~~~G~I~~sN 427 (808)
+ +...+++++|++|.+|++++|+||+|||+|+|++|+++|+ .+.|+|.+||
T Consensus 297 ~-----------------------s~~~~~~~ar~~~~~I~~~~~~tGEPGi~f~D~~N~~~~~~~~~~~~~~g~I~~TN 353 (658)
T cd01676 297 N-----------------------SVVFESKPDRLEYSFACMLIRGNGEPGIAWLDNMKAYARMVLLTTPYHDLRAKGGN 353 (658)
T ss_pred c-----------------------chheeehhhHHHHHHHHHHHHHhCCCcEEEHHHHHhhCccccccccccCCeeEecc
Confidence 2 2345688999999999999999999999999999999975 2458999999
Q ss_pred CCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 003602 428 LCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPV 507 (808)
Q Consensus 428 lC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~~~yp~ 507 (808)
||+||++++ +++|||+||||.+|+. |++.|+++|+++|||||+||+ +.||+
T Consensus 354 PCgEi~L~~----~~~CNLgSINL~~~v~------------------------d~~~l~~~v~~avRflD~Vi~-~~~p~ 404 (658)
T cd01676 354 PCGEISLES----YELCNLVEVFPLKHEG------------------------DLEDLQETLYLAGRYAKTVTL-LPLHW 404 (658)
T ss_pred ccccccCCC----CCceechhccHHhhcc------------------------cHHHHHHHHHHHHHHHHHhhc-ccCch
Confidence 999999874 3689999999999972 678999999999999999998 56999
Q ss_pred HHHHHHhhccCCceeecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCc
Q 003602 508 ETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQP 587 (808)
Q Consensus 508 ~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~ 587 (808)
|+++++++++|+||||+|||||+|+++|++|+++++.++.+ .++..+.++|.++|+|+|.
T Consensus 405 ~~~~~~~~~~R~IGlGvmGlaD~L~~lgi~~~~~~~~~~~~----~~~~~~~~~s~ela~e~G~---------------- 464 (658)
T cd01676 405 EITNEIILRNRRIGVSMSGIADFIVRAGGDLTLHDLKRWRN----IGYEAVYQYDERLSKWLGI---------------- 464 (658)
T ss_pred HHHHHHHHhcccceeeeecHHHHHHHcCCCccHHHHHHHHH----HHHHHHHHHHHHHHHHhCC----------------
Confidence 99999999999999999999999999999999888775544 4555566777889998773
Q ss_pred cccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHc
Q 003602 588 DMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEM 667 (808)
Q Consensus 588 d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~ 667 (808)
.||+++||||||||+|+|+|+|+||||+||++|+|+++.+ .|++|++.|++.
T Consensus 465 ------------------------~rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~~pl~~~l~~~ 516 (658)
T cd01676 465 ------------------------PLSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KHDPLAPALIAA 516 (658)
T ss_pred ------------------------ccccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cCcHHHHHHHHc
Confidence 2788999999999999999999999999999999998855 489999999999
Q ss_pred CCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCC-ccccccceeEeeCCC-ChhHHHHHHHH
Q 003602 668 GLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC-YIDHSQSLNIHMDQP-NFGKLTSLHFH 745 (808)
Q Consensus 668 g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~-~vDQs~S~nl~~~~~-~~~~l~~~~~~ 745 (808)
|+|.++... ..+ +.++.+|++.+++|+||+||+|++||+|||++|+ |+||+||+|+++++. +.++|..+|.+
T Consensus 517 G~~~~~~~~----~~~--~~l~~iP~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~~~dV~~~l~~ 590 (658)
T cd01676 517 GYHVEPDIY----DPT--SVLVEFPVKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPEGPALIQALQQ 590 (658)
T ss_pred CCCcHHHHh----ccC--CCcccCCHHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCCHHHHHHHHHH
Confidence 999877432 233 5688899999999999999999999999999999 699999999999874 89999999999
Q ss_pred HHHcCCceEEEEecCcc---ccccccccccccc
Q 003602 746 AWLRGLKTGMYYLRSRA---AADAIKFTVDTSV 775 (808)
Q Consensus 746 Awk~GlKt~~YY~r~~~---~~~~~~~~~~~~~ 775 (808)
+|. |+|+++.|.|... .+++....++++.
T Consensus 591 ~~~-~~KG~t~l~~~d~~~~~~q~P~E~I~ke~ 622 (658)
T cd01676 591 FQY-QYKSVSLLPRFDTTKNAAQMPFEPITKER 622 (658)
T ss_pred hhc-CCeEEEEeecCCcccCcccCCccccCHHH
Confidence 965 9999999975422 2367777888765
No 32
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.
Probab=100.00 E-value=3.5e-70 Score=638.08 Aligned_cols=481 Identities=16% Similarity=0.201 Sum_probs=391.9
Q ss_pred CChhhHHHHHHhhccc-cCCcccCCHHHHHHHHHhhhcc---------------CChHHHHHHHHHHhcCceeccccccc
Q 003602 143 YDYFGFKTLERSYLLK-VQGKVVERPQHMLMRVAVGIHK---------------DDIDSAIKTYHMMSQRWFTHASPTLF 206 (808)
Q Consensus 143 ~~y~g~~~l~~~Yllk-~~g~~~E~pq~~~~RvA~~l~~---------------~~~~~~~~~Y~~ls~~~~~~atPtl~ 206 (808)
+.-.|..+++++|... .++..-|++.+++.||-.+-.. ...+++.++|+++.++++.|++++|+
T Consensus 8 ~~~~g~~vy~Rtysr~~~~~~r~E~W~eTv~Rvv~~~~~l~~~~~~~~~~~~~~~~~~e~~~l~~~i~~~k~lPsGR~LW 87 (713)
T TIGR02505 8 WGKTALVTYKRTYARWLPEKGRSENWDETVERVVSGNRNLWPRLQDRPLLELQQSLTEEAERLYRLIYELKALPSGRNLW 87 (713)
T ss_pred cccccceeEeecccccCCCCCCCCCchhheeeeecCccccchhhhccchhhhhhhhHHHHHHHHHHHHhcccCCCccchh
Confidence 3445666778888843 4555679999999886655211 11356788999999999999999999
Q ss_pred ccCCC----CC-cccccccccc----------------------------------------------------------
Q 003602 207 NAGTP----RA-QLSSCFLVCM---------------------------------------------------------- 223 (808)
Q Consensus 207 naGt~----~~-~lsSCfl~~~---------------------------------------------------------- 223 (808)
-+||+ .+ .+.+|....+
T Consensus 88 ~gGt~~~~~~~~~~~NC~f~~~~~~~~F~~~~~llM~G~GVGf~~~~~~i~~lp~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (713)
T TIGR02505 88 IGGTDYQRRTEDSLFNCWFTAIRPQKPFSFLFDLLMKGCGVGFSVARSNISQIPRVDQEIKVQLVVDETSESYDASVEVG 167 (713)
T ss_pred hcCchhhhccchhhccceecccccccCHHHHHHHHhcCCcCCEEecccchhhCCCccccceeeeecccCCCChhhhhhhc
Confidence 99974 22 3567765543
Q ss_pred ------------cCCCHHHHHHHHHHHHHHHHhcC------CcceeeeeecCCCCcccCCCCcccCcccHHHHH------
Q 003602 224 ------------KDDSIEGIYDTLKECAIISKSAG------GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVF------ 279 (808)
Q Consensus 224 ------------~~DS~~~I~~~~~~~a~isk~gG------GiG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~------ 279 (808)
++||.|||.++++.+..++..+. .||+|||.|||+|++|+|++|.||||+||+++|
T Consensus 168 ~~~~~~~~~~~~v~DSreGWv~s~~~ll~~~~~~~~~~~~~~v~~dfS~iRP~Ga~lkg~GG~ASGPvsl~~l~~~i~~i 247 (713)
T TIGR02505 168 AVSKNEDVQDVDLPDTREGWVLANALLIDLHFAQTNADRKQKLVLDLSDIRPAGAELKGFGGTASGPVPLAKMLTDVAEI 247 (713)
T ss_pred ccccCCCceEEEcCCcHHHHHHHHHHHHHHhcCccccccCCceeeeccccCCCCCcccCCCCCCCCcHHHHHHHHHHHHH
Confidence 25999999999998877764433 469999999999999999999999999999998
Q ss_pred ------------------HHHHHHHhhCCCccccceEEeccCCcccHHHHHHhhhhcCcccccccccceecccCHHHHHH
Q 003602 280 ------------------NDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMER 341 (808)
Q Consensus 280 ------------------~~~~~~v~QgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~~v~ipD~Fm~r 341 (808)
|.++.+|.||| +||||.|..|+++||||++|+..|+..|. ..++.|+||.|.|.||..
T Consensus 248 L~~~~G~~Lt~id~~di~~~~~~~Vv~Gg-vRRgA~M~~l~~dhpdi~~fi~aK~~~~~---~~~~~N~SV~v~d~f~~~ 323 (713)
T TIGR02505 248 LSNKAGGRLTAVDAADICNLIGKAVVAGN-VRRSAEMALFSNDDPEFESFKQAKEKLMH---HRWASNNSVAVDSAFSGL 323 (713)
T ss_pred HhhhccccccchhHHHHHHHHhheeeecC-ccccceeeccCCCChHHHHHHhccccccc---ccccccceeEechhHHHH
Confidence 56788999998 89999999999999999999999986542 236899999999999821
Q ss_pred HHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhhCCcceeehhh-------Hhhh
Q 003602 342 VQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDT-------CNKK 414 (808)
Q Consensus 342 v~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~-------~Nr~ 414 (808)
.++...++++|+|+++|.|+ +|+.
T Consensus 324 -------------------------------------------------~~~~~~~~~~gePg~~fid~~~~~~~~in~~ 354 (713)
T TIGR02505 324 -------------------------------------------------ARSAADILENGEPGQVNLDLSKSEGRIVNGR 354 (713)
T ss_pred -------------------------------------------------hhhhccccccCCcchhhHhhhhccccccccc
Confidence 12233456899999999999 5777
Q ss_pred CCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH
Q 003602 415 SNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTE 494 (808)
Q Consensus 415 ~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr 494 (808)
++..+.|.|.+||||+||++++ +.+|||+||||.+|+.. -+.|+++++++||
T Consensus 355 ~~~~~~~~I~~tNPCgEi~L~~----~~~CNL~sINL~~~~~~------------------------~~~l~~~~~~avr 406 (713)
T TIGR02505 355 YQAGEDGDVEGTNPCGEILLAN----GEPCNLFEVNLLAFEED------------------------GWGLQRAFALAAR 406 (713)
T ss_pred cccccCCceeecCCCccccCCC----CCceechhccHHhhccc------------------------HHHHHHHHHHHHH
Confidence 7888889999999999999875 45899999999999742 1689999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCC-------------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 003602 495 NLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGM-------------PFDSTEAQQLNKDIFETIYYHALRT 561 (808)
Q Consensus 495 ~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi-------------~y~S~ea~~l~~~i~e~i~~~A~~a 561 (808)
+||+||+ +.||+|+++++++++|+||||+|||||+|+++|+ +|+|..+...+.++++.++..+.++
T Consensus 407 ~Ld~vi~-~~~pl~~~~~~~~~~R~IGlGv~Glad~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 485 (713)
T TIGR02505 407 YAKRVTF-SPYDDEISREIIQKNRRIGVSMSGIQDFLLLRGGTGFKDDFDPETHEAIKVRVYDKRAAKFLDRMYKIVVKA 485 (713)
T ss_pred HHHHHHh-ccCChHHHHHHHHhcCCceeehhhHHHHHHHcCCcccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 9999996 5799999999999999999999999999999998 7877777788888889999999999
Q ss_pred HHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCcccccccc
Q 003602 562 SSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 641 (808)
Q Consensus 562 S~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s 641 (808)
|.++|+|+|. .||+.+|+||||||+|+|+|+|+||||+|+
T Consensus 486 a~~~s~elg~----------------------------------------~r~~~~TTIaPTGTiS~laG~S~GIeP~~A 525 (713)
T TIGR02505 486 AQDYSKELGC----------------------------------------PEPIKHTTVKPSGTISKLAGASEGIHPPYG 525 (713)
T ss_pred HHHHHHHhCC----------------------------------------CCccceeeeCCccchHHhcCCCCccCcchh
Confidence 9999999883 278899999999999999999999999999
Q ss_pred ceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCccc----ccCCCChHH--H--hhhhchh--ccChHHHH
Q 003602 642 NIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQ----KIPQIPEEL--K--AIYKTVW--EIKQKTLV 711 (808)
Q Consensus 642 ~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~----~i~~lp~~~--k--~~y~tA~--ei~~~~~i 711 (808)
++|+|++. ..+|++|++.|++.|++.+....+ ...+|... .+..+|... . .-..+|. ++++.+|+
T Consensus 526 ~~y~Rri~----~~~ndpl~~~l~~~Gy~~~p~~~~-~~~~~~~~~~~~~~ve~p~~~~~~~~~~~~~a~~~diS~~~ql 600 (713)
T TIGR02505 526 AYLIRRIT----FSKSDPLAPALKACGYTVEADQYD-KNEQGRLPPCKTTLVEFPIKAVGADNPNIAEVGINTVSAAAQF 600 (713)
T ss_pred hheeeeee----eecCcHHHHHHHHcCCCCCccccc-cccccccccccceeEEeeecccccCCCCCcccccccCCHHHHH
Confidence 99999984 358999999999999988632111 00011110 011122211 0 0122455 99999999
Q ss_pred HHHHHhCC-ccccccceeEeeCCCChhHHHHHHHHHHHcC
Q 003602 712 DMAVDRGC-YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRG 750 (808)
Q Consensus 712 ~~~a~~Q~-~vDQs~S~nl~~~~~~~~~l~~~~~~Awk~G 750 (808)
+++|..|+ |+|+++|+|+++++...++|..++.++|+.-
T Consensus 601 ~~qa~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~ 640 (713)
T TIGR02505 601 AFYAFLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS 640 (713)
T ss_pred HHHHHHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh
Confidence 99999999 8999999999999877999999999999844
No 33
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=100.00 E-value=7e-49 Score=441.95 Aligned_cols=372 Identities=22% Similarity=0.251 Sum_probs=332.7
Q ss_pred HHHHHHHHhcCceecccccccccCCCCCcccccccccccCCCH---------------HHHHHHHHHHHHHHHhc--CCc
Q 003602 186 AIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSI---------------EGIYDTLKECAIISKSA--GGI 248 (808)
Q Consensus 186 ~~~~Y~~ls~~~~~~atPtl~naGt~~~~lsSCfl~~~~~DS~---------------~~I~~~~~~~a~isk~g--GGi 248 (808)
++++|++++++++.+++|+ .+++|||+..+ +|++ ++|...+...+.+++.+ ||+
T Consensus 1 ~~~~~~~~~~g~~~~~~~~--------~~~~~C~~~~~-~d~l~~g~~~~~~p~~~~~eai~~~~~~~~~~~~~~~~ggv 71 (401)
T cd00576 1 AERIYEAVKSGVITVGRPD--------LPFTGCVLVDY-GDSLDPGIKGVNETAKSINEAIQKTYQIIALAASNQNGGGV 71 (401)
T ss_pred CHHHHHHHHcCccccCCcc--------cccCceEEEEh-HHHHHHhhhhcCCCccCHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4689999999999999997 47899999997 8999 89999888888877776 999
Q ss_pred ceee--eeecCCCCcccC-CCCcccCcccHHHHHHHHHHHHhhCCCccccceEEeccCCc-----ccHHHHHHhhhhcCc
Q 003602 249 GVSV--HNIRATGSYIRG-TNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWH-----ADIFEFLDLRKNHGK 320 (808)
Q Consensus 249 G~~~--s~iR~~Gs~I~g-~~g~ssG~vp~lk~~~~~~~~v~QgG~~R~ga~~vyl~~wH-----~DI~~Fl~~K~~~g~ 320 (808)
|++. +.+||.|+++++ .++++.|++++++.|+..+..+.|+| .|+|+.+++++.|| +|+++||++|.+.+.
T Consensus 72 ~~~~~d~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~ 150 (401)
T cd00576 72 SFARASSILSPYGSRDYAKGSGTETDAVEAADAFNLALKEVGQGN-GRTGAATGFIGGVHKGKGDKISQEFLNLALANGG 150 (401)
T ss_pred CCchhhhhhhHHHHhhhhcCCCChHHHHHHHHHHHHHHhhhhhcC-CCCceEEEEECCCCccccCHHHHHHHHHHHhcCC
Confidence 9999 999999999987 57889999999999999999999997 69999999999999 999999999998777
Q ss_pred ccccccccceecccCHHHHHHHHcCCcEEEecCCCCCCchhhhchHHHHHHHHHHHcCceeEEEeHHHHHHHHHHHHHhh
Q 003602 321 EEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400 (808)
Q Consensus 321 e~~r~~~l~~~v~ipD~Fm~rv~~~~~w~Lf~P~~~~~L~~~yg~eF~~~Y~~~e~~~~~~~~v~Ar~L~~~I~~~~~et 400 (808)
+..+....+++|.+.+.|+++ .++|+++|++++++++++
T Consensus 151 ~~~~~~~p~~sv~~~~~~~~~-----------------------------------------~~~~~~l~~~~~~~~~~~ 189 (401)
T cd00576 151 EGIPLNFPNLSVRVSSDKPGI-----------------------------------------LVKAVELKQLIAEEARKT 189 (401)
T ss_pred CCccCCCCcEEEEeecCCCCc-----------------------------------------cccHHHHHHHHHHHHHHh
Confidence 766677788888887766532 178999999999999999
Q ss_pred CCcceeehhhHhhhCCCCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCC
Q 003602 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480 (808)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (808)
|.||++|. .+|||+||||++++... .++...+
T Consensus 190 g~P~~~n~---------------------------------~~~~l~siNL~~~~~~~---------------~~~~~~~ 221 (401)
T cd00576 190 GSPGIFND---------------------------------ELCNLVSLNLARIMEKA---------------INGSMDV 221 (401)
T ss_pred CCCCEEEc---------------------------------cccccHHHHHHHHHHHH---------------hcccHHH
Confidence 99999987 36999999999998741 0012346
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHH
Q 003602 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFD-STEAQQLNKDIFETIYYHAL 559 (808)
Q Consensus 481 D~e~L~~~v~~avr~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~~~gi~y~-S~ea~~l~~~i~e~i~~~A~ 559 (808)
+++.|++++++++|+||++++...+++|++++.+.++|++|||++|+|+++.+++++|. |++|.+++++|++.|++.+.
T Consensus 222 ~~~~l~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~r~~giG~~Gla~~~~~l~~~~~~~~~a~~~~~~i~~~~~~~~~ 301 (401)
T cd00576 222 VLEELEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGLGIAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLV 301 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHhCccCCccccccHhHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999899999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCcccccc
Q 003602 560 RTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPY 639 (808)
Q Consensus 560 ~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~ 639 (808)
++|.+ .||+.+++++|++|+|.+.+.|+||+|.
T Consensus 302 ~~s~~-----------------------------------------------~~~~~~~~~~P~~s~~~~~~~s~gi~p~ 334 (401)
T cd00576 302 KATNE-----------------------------------------------RGFNFLLGLSPSESNSSGAPATNGVSPS 334 (401)
T ss_pred Hhhhh-----------------------------------------------cCCccccceeecccccCCCCCCCCcCCc
Confidence 88864 4789999999999999999999999999
Q ss_pred ccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCC
Q 003602 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGC 719 (808)
Q Consensus 640 ~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~ 719 (808)
++++|. +++-+++|.++|+++|.+|+
T Consensus 335 ~~~~~~------------------------------------------------------~~~~~~~~~~~i~~~a~~~~ 360 (401)
T cd00576 335 RGXIAI------------------------------------------------------VLNGDIGPEESLASVAILQF 360 (401)
T ss_pred cccccc------------------------------------------------------cccccCCHHHHHHHhhcCcc
Confidence 998765 23457899999999999999
Q ss_pred ccccccceeEeeCCC-C-hhHHHHHHHHHHHcCCceEEEE
Q 003602 720 YIDHSQSLNIHMDQP-N-FGKLTSLHFHAWLRGLKTGMYY 757 (808)
Q Consensus 720 ~vDQs~S~nl~~~~~-~-~~~l~~~~~~Awk~GlKt~~YY 757 (808)
|+||++|+|+++++. . .++|.+++..||+.|+|++.+|
T Consensus 361 ~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i~~n 400 (401)
T cd00576 361 YADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRVN 400 (401)
T ss_pred cccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeEEec
Confidence 999999999999864 3 8899999999999999997765
No 34
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=99.75 E-value=1.1e-18 Score=154.02 Aligned_cols=72 Identities=44% Similarity=0.631 Sum_probs=62.3
Q ss_pred CCChhhHHHHHHhhcccc-CCcccCCHHHHHHHHHhhhcc---------CChHHHHHHHHHHhcCceecccccccccCCC
Q 003602 142 DYDYFGFKTLERSYLLKV-QGKVVERPQHMLMRVAVGIHK---------DDIDSAIKTYHMMSQRWFTHASPTLFNAGTP 211 (808)
Q Consensus 142 ~~~y~g~~~l~~~Yllk~-~g~~~E~pq~~~~RvA~~l~~---------~~~~~~~~~Y~~ls~~~~~~atPtl~naGt~ 211 (808)
.|+|+|+++|+++||+|. +|+++|+||++|||||++++. .+.+++++||++|++++|+||||||+||||+
T Consensus 2 ~~~~~a~~~l~~rYl~k~~~g~~~Etpq~~~~RVA~~la~~e~~y~~~~~~~~~~~~fy~~l~~~~f~patP~l~naGt~ 81 (83)
T PF00317_consen 2 LLSYNAAKVLYDRYLLKDEDGKVIETPQEMFMRVAMALASAEPKYDDAEDRMEWAEEFYDLLSNQKFIPATPTLSNAGTK 81 (83)
T ss_dssp GSSHHHHHHHHHHTS-BETTSCB--SHHHHHHHHHHHHHTCCGG-THCCTHHHHHHHHHHHHHTTSEEE-HHHHHHTTSS
T ss_pred CCCHHHHHHHHHhhCccCCCcCEeeCHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHcCCeecCCHHHhcCCCC
Confidence 589999999999999994 688999999999999999996 4578899999999999999999999999998
Q ss_pred CC
Q 003602 212 RA 213 (808)
Q Consensus 212 ~~ 213 (808)
+|
T Consensus 82 ~g 83 (83)
T PF00317_consen 82 RG 83 (83)
T ss_dssp S-
T ss_pred CC
Confidence 75
No 35
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=99.32 E-value=5.1e-12 Score=113.14 Aligned_cols=85 Identities=21% Similarity=0.351 Sum_probs=73.2
Q ss_pred CeEEecCCceeecChHHHHHHHHHHH-ccCCCCCcCHHhHHHHHHhhcCC----CCCHHHHHHHHHHHHHhhccCCCChH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLS-YGLSIEHCDPVLVSQKVCTGVYK----GVTTSQLDELAAETAAAMTTNHPDYA 75 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~-~~l~~~~v~~~~i~~~~~~~~~~----~itt~ei~~~~~~~a~~~~~~~p~y~ 75 (808)
|+|+||||+.||||.+||.++|.+|| .+...+..++.+|+.+|...|++ +|||+||++++++++. .+|.|.
T Consensus 1 i~ViKrdG~~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~----~~~~~~ 76 (90)
T PF03477_consen 1 IKVIKRDGRVEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVENALM----EEGFYD 76 (90)
T ss_dssp -EEEESSSSEEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHHHHHH----TSTTHH
T ss_pred CEEEeCCCcEeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHHHHH----cCChHH
Confidence 79999999999999999999999999 33333457889999999999999 9999999999999985 899999
Q ss_pred HHHHHHHHHHHHHH
Q 003602 76 SLAARIVVSNLHKN 89 (808)
Q Consensus 76 ~~A~rl~~~~l~k~ 89 (808)
.+++++..+++||+
T Consensus 77 ~a~~yi~yr~~r~e 90 (90)
T PF03477_consen 77 VARAYILYRNIRKE 90 (90)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998888875
No 36
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.17 E-value=5e-08 Score=116.30 Aligned_cols=243 Identities=14% Similarity=0.232 Sum_probs=143.1
Q ss_pred HHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccC------------CCCCcceeeeccccChhhhhhh
Q 003602 390 WFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQY------------TSPTETAVCNLASIALPRYVRE 457 (808)
Q Consensus 390 ~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~------------~~~~e~~~CNL~SInL~~~v~~ 457 (808)
++.+.+...+.|.||+.+-.+... .+ |.+. --|+-..+- ..+.-++++.--||||++..-.
T Consensus 345 ~d~~~e~~ak~g~p~f~n~~~~~~-~~----~~~~--~MgCR~~l~~~~~~~~~~g~~g~~~~~GnigvvTiNLPRia~~ 417 (656)
T PRK08270 345 ADLLFEMTAKYGLPYFQNFINSDL-KP----EDVR--SMCCRLQLDLRELRKRGGGLFGSAELTGSIGVVTINLPRLGYL 417 (656)
T ss_pred HHHHHHHHHhhCCccccccccccc-CC----CCcc--ccCCCCccchhhhhhhcCCcccCCCccceeeeEeccHHHHHHH
Confidence 456777788999999985221110 11 1111 123322111 0111123334448999998754
Q ss_pred cCCCCCCCCCcccccCCCCCCCCC----HHHHHHHHHHHHHH-------HHHHHhcCCCCHHHHHHHhhccCCceeecch
Q 003602 458 MGVPMESHPSKLVGSRGSKNRYFD----FEKLAEVTGIVTEN-------LNKIIDVNYYPVETARRSNLRHRPIGIGVQG 526 (808)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~fD----~e~L~~~v~~avr~-------Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~G 526 (808)
.. | |+.|.+.+.++... |-..+..+.||.-.......++...-||+.|
T Consensus 418 --------------------a~-d~~~F~~~L~~~l~la~~~L~~r~~~l~~~~~~~l~p~~~~~l~~~~~~~~TIG~iG 476 (656)
T PRK08270 418 --------------------SK-DEEEFFARLDELMDLAKDSLEIKRKVIERLTDKGLYPYTKRYLGTLRNHFSTIGLNG 476 (656)
T ss_pred --------------------cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHhcCCeeeeehhh
Confidence 12 3 45566666666443 3444555678875443323344444689999
Q ss_pred HHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHH
Q 003602 527 LADTFI-LLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRD 605 (808)
Q Consensus 527 lad~L~-~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~ 605 (808)
|++++. ..|...+++||.+|+.+|.++|...+-+.+ +|.|--=..+.+|. ...--.-.|.
T Consensus 477 l~E~~~~~~G~~~~~~e~~~f~~~vl~~m~~~~~~~~----~e~g~~~~l~~TPA---------------Es~~~rfak~ 537 (656)
T PRK08270 477 MNEACLNFLGKDITTEEGRAFALRVLDHMRERLVEFQ----EETGNLYNLEATPA---------------EGTTYRLAKE 537 (656)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEECcc---------------chHHHHHHHH
Confidence 999986 789888999999999999999999887665 45553112222221 0000112234
Q ss_pred HHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcc
Q 003602 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSV 685 (808)
Q Consensus 606 ~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv 685 (808)
|-+++|..- +.|.++- |++.|-|.
T Consensus 538 D~~~fg~i~--------------~~g~~d~--~YYTNS~h---------------------------------------- 561 (656)
T PRK08270 538 DKKRYPDII--------------TAGTDEE--PYYTNSTQ---------------------------------------- 561 (656)
T ss_pred HHHHcCCcc--------------cCCCCCC--CcccCCcc----------------------------------------
Confidence 455677311 2233321 44443211
Q ss_pred cccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC--CChhHHHHHHHHHHH
Q 003602 686 QKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ--PNFGKLTSLHFHAWL 748 (808)
Q Consensus 686 ~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~--~~~~~l~~~~~~Awk 748 (808)
+| ...++++.+-|+..+..|++.+-+--.-+++++ ++.+-+.++..++++
T Consensus 562 -----~~--------v~~~~~~feki~~e~~~~~~~~GG~I~hv~l~e~~~n~~a~~~lv~~~~~ 613 (656)
T PRK08270 562 -----LP--------VGYTDDPFEALELQDELQTKYTGGTVFHLYLGEAISDAEACKKLVKKALE 613 (656)
T ss_pred -----cC--------CCCCCCHHHHHhhhccCcceecceEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 11 133467778899999999999998888888886 467888888888875
No 37
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.16 E-value=1.6e-07 Score=113.01 Aligned_cols=257 Identities=18% Similarity=0.150 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCccccc-CC----CCCcceeeecc--ccChhhhhhhc
Q 003602 386 AQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQ-YT----SPTETAVCNLA--SIALPRYVREM 458 (808)
Q Consensus 386 Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~-~~----~~~e~~~CNL~--SInL~~~v~~~ 458 (808)
..+||+..+++..+.+.|++++.|..-.. .|.+.++==|--.+. .. ....++.+||+ |||||+.--..
T Consensus 347 ~~~l~~~a~~~~~k~~~p~f~~~~~~~~~-----~g~~~~~MgCR~~l~~~~~~~g~~~~~Gr~nigvvTiNLPRia~~~ 421 (711)
T PRK09263 347 NYDIKQLALECATKRMYPDILNYDKIVEL-----TGSFKTPMGCRSFLQGWKDENGEEVHDGRNNLGVVTLNLPRIALEA 421 (711)
T ss_pred hHHHHHHHHHHhccccCCceecccchhhc-----CCCeeeCCCCCCcCcchhccCCCccccccceeeEEeccHHHHHHHh
Confidence 45788888999999999999998854211 133332222221111 11 11124567776 89999986430
Q ss_pred CCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHH------hcCCCCHHHHH--------------HHhhccC
Q 003602 459 GVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKII------DVNYYPVETAR--------------RSNLRHR 518 (808)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vI------d~~~yp~~~~~--------------~~~~~~R 518 (808)
..+...| |+.|.+.+.++.+.|..=. ....+|+-... ..-+..|
T Consensus 422 ---------------~~d~~~F-~~~Ld~~l~la~~~L~~r~~~~~~~~~~~~P~l~~~g~~~~~l~~~~~~~~~~~~~~ 485 (711)
T PRK09263 422 ---------------KGDEDKF-WEILDERLELAKKALMTRIERLKGAKPRVAPILYMYGAFGVRLKADDDVDELFKNGR 485 (711)
T ss_pred ---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHhccccccCCCCcchHHHhcCCC
Confidence 0011112 4567777777766553322 23557753221 0011112
Q ss_pred -CceeecchHHHHHH-HcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCC
Q 003602 519 -PIGIGVQGLADTFI-LLGMPFD-STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPS 595 (808)
Q Consensus 519 -~iGlGv~Glad~L~-~~gi~y~-S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~ 595 (808)
.+-||+.||+.++. ..|-.+. ++||.+|+.+|.++|...+-+.+ +|.|--=..+++|.
T Consensus 486 ~T~siG~iGl~E~~~~~~G~~~~e~~e~~~fa~~vl~~m~~~~~~~~----~e~g~~~~l~~TPA--------------- 546 (711)
T PRK09263 486 ATISLGYIGLYETINALYGGSWEVNPEAKAFALAIVKRMKDACDQWK----KETGYGFSLYSTPS--------------- 546 (711)
T ss_pred ceEeeeHhHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEECCc---------------
Confidence 45799999999985 7888877 99999999999999998877655 55563222222321
Q ss_pred CcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHh
Q 003602 596 DRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIK 675 (808)
Q Consensus 596 ~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~ 675 (808)
...--.-.|.|-+++|+ +.|.++. |++.|-|.
T Consensus 547 Es~~~rfak~D~~~fg~----------------i~g~~d~--~YYTNS~h------------------------------ 578 (711)
T PRK09263 547 ESLTDRFCRLDTEKFGV----------------IPGITDK--GYYTNSFH------------------------------ 578 (711)
T ss_pred chHHHHHHHHHHHHcCC----------------CCCCCCC--CccCCCEe------------------------------
Confidence 00011223445566773 1233321 44443221
Q ss_pred hhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC--CChhHHHHHHHHHHHcCCce
Q 003602 676 NKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ--PNFGKLTSLHFHAWLRGLKT 753 (808)
Q Consensus 676 ~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~--~~~~~l~~~~~~Awk~GlKt 753 (808)
+| --.++++.+-|+..+..|++..-+--.-+++++ ++.+.+.++..+|.+ +
T Consensus 579 ---------------~p--------v~~~i~~~eki~~e~~~~~~~~GG~I~yve~~~~~~n~~a~~~lv~~~~~-~--- 631 (711)
T PRK09263 579 ---------------YD--------VRKKVNPFEKLDFEKPYPPLASGGFIHYCEYPNLQHNLKALEAVWDYSYD-R--- 631 (711)
T ss_pred ---------------cC--------CCCCCCHHHHHHhhcccccccCCeEEEEEecCCCcCCHHHHHHHHHHHHH-C---
Confidence 11 112367777889999999988777444455654 466788888888877 3
Q ss_pred EEEE
Q 003602 754 GMYY 757 (808)
Q Consensus 754 ~~YY 757 (808)
+-|+
T Consensus 632 i~Y~ 635 (711)
T PRK09263 632 VGYL 635 (711)
T ss_pred CCeE
Confidence 3565
No 38
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=99.04 E-value=2.8e-07 Score=111.19 Aligned_cols=260 Identities=19% Similarity=0.218 Sum_probs=148.1
Q ss_pred eHHHHHHHHHHHHHhhCCcceeehhhH-hhhCCCCCCCcee--eecCCcccccCCC----CCcceeee--ccccChhhhh
Q 003602 385 QAQNLWFEILKSQIETGTPYMLFKDTC-NKKSNQQNLGTIK--SSNLCTEVIQYTS----PTETAVCN--LASIALPRYV 455 (808)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~-Nr~~~~~~~G~I~--~sNlC~EI~~~~~----~~e~~~CN--L~SInL~~~v 455 (808)
|..+||+..+++..+.+.|+++|.|.. |+..-. -|.-. -.--|+--.+..+ ..-.+.+| +.+|||++.-
T Consensus 378 p~~~l~~la~~~~~kr~~p~f~~~~~~~~~~~~~--~g~~~~~v~~MgCR~~l~~~~~G~~~~~g~Gn~gvVTINLpRiA 455 (735)
T PRK07111 378 PNYDLFKLACRVAAKRLFPNFSFLDAPFNKEYYD--KGRPPTEVATMGCRTRVMSNVNGEEGTKGRGNLSFTTINLPRLA 455 (735)
T ss_pred chHHHHHHHHHHhcCcCCCceeecccccchhccC--CCCcCcCcccCCCcceecccCCCcccccCccceeEEEecHHHHH
Confidence 467889999999999999999999865 221100 01100 0012322221111 11122344 4599999986
Q ss_pred hhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHH---HH---hcCCCCHHHH---HHHh------------
Q 003602 456 REMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNK---II---DVNYYPVETA---RRSN------------ 514 (808)
Q Consensus 456 ~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~---vI---d~~~yp~~~~---~~~~------------ 514 (808)
-.. ..+...| |+.|.+.+.++.+.|+. ++ ....+|+-.. -...
T Consensus 456 ~~a---------------~~d~~~F-~~~L~~~l~la~~~L~~R~~~l~~~~~~~~P~~~~~g~~l~~~~l~~~~~~~~~ 519 (735)
T PRK07111 456 IEA---------------KKDIDKF-FELLDERLELAIEQLLHRYEVQKTLKVKDFPFLMGQGLWKGSENLGPDDSIEPV 519 (735)
T ss_pred HHh---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCchHhhcccccccccCCCccchhHH
Confidence 530 0011112 34677777777666642 12 2344665431 0000
Q ss_pred hccCCceeecchHHHHHHH-cCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCC
Q 003602 515 LRHRPIGIGVQGLADTFIL-LGMPF-DSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGV 592 (808)
Q Consensus 515 ~~~R~iGlGv~Glad~L~~-~gi~y-~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~ 592 (808)
-++-.+.||+.||+.++.. .|..+ .+++|.+|+.+|.++|...+-+.+. |.|---..+.+|.. |
T Consensus 520 ~~~~t~tiG~iGL~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~~----e~G~~~~l~~tPAE-s--------- 585 (735)
T PRK07111 520 LKQGTLGIGFIGLAETLVALTGKHHGESEEAQELGLKIVSHMRDFCDEYKE----EYKLNYSLLATPAE-G--------- 585 (735)
T ss_pred hhcCceeeeHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HhCCCceEEEcccc-h---------
Confidence 1234568999999999755 78776 7999999999999999987776553 33421011122110 0
Q ss_pred CCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcH
Q 003602 593 NPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSP 672 (808)
Q Consensus 593 ~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~ 672 (808)
.--.-.+.|.+++|+ +.|+++. |++.|-|.
T Consensus 586 -----~~~rfa~~D~~~fg~----------------i~g~~d~--~yYTNS~h--------------------------- 615 (735)
T PRK07111 586 -----LSGRFIKMDRKKFGE----------------IKGVTDK--EYYTNSFH--------------------------- 615 (735)
T ss_pred -----hHHHHHHHHHHhcCC----------------CCCCCCC--Ccccccee---------------------------
Confidence 000111445556663 1133221 34433211
Q ss_pred HHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC---CChhHHHHHHHHHHHc
Q 003602 673 IIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ---PNFGKLTSLHFHAWLR 749 (808)
Q Consensus 673 ~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~---~~~~~l~~~~~~Awk~ 749 (808)
+| --.++++.+.|+..+..|++..-+...-+++++ ++.+-+.++-.+|.+.
T Consensus 616 ------------------lp--------v~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~e~~~n~eal~~lvk~~~~~ 669 (735)
T PRK07111 616 ------------------VP--------VYYPISIFEKIEIEAPYHKLTNGGHISYVELDGDPSKNVEAFEIIVKAMKNT 669 (735)
T ss_pred ------------------ec--------CCCCCCHHHHHHhhcccccccCCeEEEEEEeCCccCCCHHHHHHHHHHHHhC
Confidence 11 123467788999999999999999999999984 3667778877778776
Q ss_pred CCc
Q 003602 750 GLK 752 (808)
Q Consensus 750 GlK 752 (808)
|+.
T Consensus 670 ~i~ 672 (735)
T PRK07111 670 NIG 672 (735)
T ss_pred CCc
Confidence 554
No 39
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=97.84 E-value=0.0014 Score=78.02 Aligned_cols=250 Identities=20% Similarity=0.265 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccC--------CCCCcceeeeccccChhhhhhhcC
Q 003602 388 NLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQY--------TSPTETAVCNLASIALPRYVREMG 459 (808)
Q Consensus 388 ~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~--------~~~~e~~~CNL~SInL~~~v~~~~ 459 (808)
++++.++++..++|.||+++.|+.-.. .|...++ -|+-..+- ..+.-.+...+.+|||++.-...
T Consensus 233 d~~~~a~~~~ak~~~P~f~n~~~~~~~-----~~~~~~~-MgCR~~l~~~~~~~~~~~~~~~Gn~gvvTiNLpRiA~~a- 305 (579)
T TIGR02487 233 DLFELAFECAAKRGYPYFLNLDPEDNV-----KEDVRYP-MGCRTFLSPNENGDGEESYIGRGNIGVTSINLPRIAYKS- 305 (579)
T ss_pred HHHHHHHHHHHHhCCCCcccchhhhcc-----CCCeecc-CCCcccccceecCCCCccCcccceeeeEEcchHHHHHHh-
Confidence 799999999999999999986643211 1222222 23322111 11112334445599999987531
Q ss_pred CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHh------cCCCCHHHHHH---H----------hhccCCc
Q 003602 460 VPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIID------VNYYPVETARR---S----------NLRHRPI 520 (808)
Q Consensus 460 ~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId------~~~yp~~~~~~---~----------~~~~R~i 520 (808)
..+...| |+.|.+.+.++.+.|..=.+ ...+|.--..- . ..++-.+
T Consensus 306 --------------~~d~~~F-~~~L~~~l~l~~~~L~~r~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~ 370 (579)
T TIGR02487 306 --------------RGDEEEF-FEELDEYLEIAKEALEIRREYLKKMLAKDLPPMYSQGGWDGGNLLDESVEEILKSGTN 370 (579)
T ss_pred --------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHhccccccccccchHHHHhhcCee
Confidence 0011112 45777788887766654333 13344432211 0 0334578
Q ss_pred eeecchHHHHHH-HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcc
Q 003602 521 GIGVQGLADTFI-LLGMP-FDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRW 598 (808)
Q Consensus 521 GlGv~Glad~L~-~~gi~-y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~ 598 (808)
-||+.||++++. .+|.. .+|+||.+|+.+|.++|...+.+.+ +|.|--=..+.+|.. + .
T Consensus 371 siG~iGL~Ea~~~l~G~~~~~~~~a~~f~~~Il~~m~~~~~~~~----~e~g~~~~l~~TPAE--------------s-~ 431 (579)
T TIGR02487 371 SIGFIGLNEALVALTGKHLHEEEEARELAIRILEFIRDKADEFK----KETGLNYSVYATPAE--------------S-L 431 (579)
T ss_pred eeehhhHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEECCcc--------------h-H
Confidence 899999999886 68887 4789999999999999999887666 334421111222210 0 0
Q ss_pred cHHH-HHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhh
Q 003602 599 DWGG-LRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNK 677 (808)
Q Consensus 599 dW~~-Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~ 677 (808)
- .. .+.+-+++|.. .|.++- |+++|-|
T Consensus 432 ~-~rfa~~D~~~fg~i----------------~gv~d~--~yYTNS~--------------------------------- 459 (579)
T TIGR02487 432 C-GRFAKKDREEFGEI----------------PGVTDK--PYYTNSF--------------------------------- 459 (579)
T ss_pred H-HHHHHHHHHHcCCC----------------CCCCCC--CcCCCCE---------------------------------
Confidence 0 11 13344556631 122211 3333321
Q ss_pred hhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC--CChhHHHHHHHHHHHcC
Q 003602 678 IIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ--PNFGKLTSLHFHAWLRG 750 (808)
Q Consensus 678 i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~--~~~~~l~~~~~~Awk~G 750 (808)
+ +| --.++++.+.|+..+..|++..-+...-+++++ ++.+.+.++..+|.+.|
T Consensus 460 ---------h---ip--------v~~~~~~~eki~~e~~f~~~~~GG~i~~v~l~e~~~n~eal~~lv~~a~~~~ 514 (579)
T TIGR02487 460 ---------H---VP--------VYEDVNLGEKIDIEAPFHPLTNGGHITYIELDEAIPDPEALKDITKKAMKNG 514 (579)
T ss_pred ---------e---eC--------CCCCCCHHHHHHhhcchhcccCCceEEEEEcCCCCCCHHHHHHHHHHHHhcC
Confidence 1 11 122477888999999999999999999999986 46788999999999987
No 40
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=97.78 E-value=2.3e-05 Score=77.07 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=54.8
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcC----CCCCHHHHHHHHHHHHHhhccCCCChHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVY----KGVTTSQLDELAAETAAAMTTNHPDYAS 76 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~----~~itt~ei~~~~~~~a~~~~~~~p~y~~ 76 (808)
++|+||||+.++||.+||...|.+|......+.-....++..|...++ ++|+++|||+++.++.... .+-.|..
T Consensus 49 i~VIKRDG~~v~Fd~~KI~~AI~kA~~a~~~~~~~~~~i~~~V~~~l~~~~~~~IsveEIqDiVE~~L~~~--~~~ay~r 126 (154)
T PRK00464 49 LLVIKKDGRREPFDREKLRRGLRRACEKRPVSSEQIEAAVSRIERQLRASGEREVPSKEIGELVMEELKKL--DEVAYVR 126 (154)
T ss_pred cEEEecCCcCCCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhc--CCEEEEE
Confidence 369999999999999999999999986643111223455666666665 4899999999988766333 3335555
Q ss_pred HHH
Q 003602 77 LAA 79 (808)
Q Consensus 77 ~A~ 79 (808)
+|+
T Consensus 127 fa~ 129 (154)
T PRK00464 127 FAS 129 (154)
T ss_pred hhh
Confidence 554
No 41
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.67 E-value=0.0037 Score=74.64 Aligned_cols=259 Identities=17% Similarity=0.175 Sum_probs=152.1
Q ss_pred eHHHHHHHHHHHHHhhCCcceeehhhH-hhhCCCCCCC-ceeeecCCcccccCCC----CCcceeeec--cccChhhhhh
Q 003602 385 QAQNLWFEILKSQIETGTPYMLFKDTC-NKKSNQQNLG-TIKSSNLCTEVIQYTS----PTETAVCNL--ASIALPRYVR 456 (808)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~-Nr~~~~~~~G-~I~~sNlC~EI~~~~~----~~e~~~CNL--~SInL~~~v~ 456 (808)
|..+||+..+++..+.+.|.++|.|.. |........+ .+. --|+-..+..+ ......+|+ .+|||++.--
T Consensus 259 p~~~l~~la~~~~~kr~~p~f~~~~~~~n~~~~~g~~~~~~~--~MgCR~~l~~~~~G~~~~~g~GnigvVTINLPRIA~ 336 (618)
T PRK14704 259 PNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVC--YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVKLAL 336 (618)
T ss_pred chHHHHHHHHHHhcCcCCcceeccccccchhhhcCCCCcccc--cCcccceeccccCCCcCCCccceeeeEEeeHHHHHH
Confidence 567899999999999999999999853 2110000001 110 11222211110 011234454 4999999865
Q ss_pred hcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHh------cCCCCHHHHHHH---h------------h
Q 003602 457 EMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIID------VNYYPVETARRS---N------------L 515 (808)
Q Consensus 457 ~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId------~~~yp~~~~~~~---~------------~ 515 (808)
.. .+...| |+.|.+.+.++.+.|..-++ ...+|.--..-. . .
T Consensus 337 ~a----------------~d~e~F-~~~L~~~l~l~~~~L~~R~~~l~~~~~~~~P~l~~~g~~~~~~~l~~~~~~~~~~ 399 (618)
T PRK14704 337 IS----------------GSKEAF-FEALNYYLDLGIKQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASIL 399 (618)
T ss_pred HC----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHCcccccccccCCCcchhhhc
Confidence 31 011112 35677777787776665333 223454311100 0 0
Q ss_pred ccCCceeecchHHHHH-HHcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCC
Q 003602 516 RHRPIGIGVQGLADTF-ILLGMPF-DSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVN 593 (808)
Q Consensus 516 ~~R~iGlGv~Glad~L-~~~gi~y-~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~ 593 (808)
++-.+-||+.||++++ ...|-.+ .|+||.+|+.+|.++|...+.+.+ +|.|--=+.+.+|.-
T Consensus 400 ~~~t~siG~iGL~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~----~e~g~~~nl~~TPAE------------ 463 (618)
T PRK14704 400 KQGTLSLGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKAT----EEHELNFSVIATPAE------------ 463 (618)
T ss_pred ccceeeeeHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCceeeecccc------------
Confidence 1223579999999987 4467666 799999999999999999877665 455632222333320
Q ss_pred CCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHH
Q 003602 594 PSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPI 673 (808)
Q Consensus 594 ~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~ 673 (808)
-.--.-.+.+-+++|+ +.|+++ .|++.|-|.
T Consensus 464 ---s~~~Rfa~~D~~~fg~----------------i~gv~d--~~YYTNS~h---------------------------- 494 (618)
T PRK14704 464 ---GLSGKFVKKDREEFGV----------------ISGITN--HNYYTNSFH---------------------------- 494 (618)
T ss_pred ---cHHHHHHHHHHHhCCC----------------cCCCCC--CCcccCcee----------------------------
Confidence 0011233445566653 124433 456555321
Q ss_pred HhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeC-C--CChhHHHHHHHHHHHcC
Q 003602 674 IKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMD-Q--PNFGKLTSLHFHAWLRG 750 (808)
Q Consensus 674 ~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~-~--~~~~~l~~~~~~Awk~G 750 (808)
+| --.++++-+.|+..+..|++..-+...-++++ + ++.+-+.++..+|.+.|
T Consensus 495 -----------------ip--------V~~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~ 549 (618)
T PRK14704 495 -----------------IP--------VYYNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHG 549 (618)
T ss_pred -----------------cc--------CCCCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcC
Confidence 11 12346778899999999999999999999995 4 46778888888887755
Q ss_pred Cc
Q 003602 751 LK 752 (808)
Q Consensus 751 lK 752 (808)
+.
T Consensus 550 i~ 551 (618)
T PRK14704 550 VG 551 (618)
T ss_pred Cc
Confidence 43
No 42
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=97.47 E-value=0.006 Score=72.36 Aligned_cols=253 Identities=22% Similarity=0.279 Sum_probs=152.4
Q ss_pred eHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccc-----------cCCCCCcceeeeccccChhh
Q 003602 385 QAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVI-----------QYTSPTETAVCNLASIALPR 453 (808)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~-----------~~~~~~e~~~CNL~SInL~~ 453 (808)
+-.++++.++++..+.|.|+++|.+.. ... .|.+. -=|+-.. ....+.-.++..+.+|||++
T Consensus 227 ~~~d~~~~~~~~~~k~~~p~f~n~~~~--~~~---~~~~~--~mcCR~~l~~~~~~~~~~~~~~~~~~Gs~~vvTiNLpR 299 (555)
T cd01675 227 PNYDLKELAFECAAKRGYPYFLNFDNS--DNV---PGDVR--AMGCRLFLDKNELKRGGGLEGSGDGTGNIGVVTINLPR 299 (555)
T ss_pred CchHHHHHHHHHHHHHCCCCccccccc--ccc---CCCcc--cccCccccchhhhcccCCCCccCcccceeeeEEechHH
Confidence 345678999999999999999977652 111 12111 1233111 11122234566677999999
Q ss_pred hhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHH-------HhcCCCCHHHHHHHh------hccCCc
Q 003602 454 YVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKI-------IDVNYYPVETARRSN------LRHRPI 520 (808)
Q Consensus 454 ~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~v-------Id~~~yp~~~~~~~~------~~~R~i 520 (808)
...+. ..+...| |+.|.+.+.++.+.|+.- +....+|+-...... ..+...
T Consensus 300 ia~~a---------------~~d~~~F-~~~L~~~l~l~~~~l~~r~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 363 (555)
T cd01675 300 IAYEA---------------RGDEEKF-FELLDEYLELAKDALEIRRKRLKEALARGLPPLYQEGLGGGKLLFILKRHTL 363 (555)
T ss_pred HHHHh---------------cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHcCcccccceecCCCeEE
Confidence 97541 0011112 346777777776554433 233446654443333 345567
Q ss_pred eeecchHHHHHHH-cCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcc
Q 003602 521 GIGVQGLADTFIL-LGMPFD-STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRW 598 (808)
Q Consensus 521 GlGv~Glad~L~~-~gi~y~-S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~ 598 (808)
-||+.||++++.. .|-..+ +++|.+|+.+|.++|...+.+.+ +|.|--=..+.+|. +
T Consensus 364 tiG~iGL~Ea~~~l~g~~~~~~~~~~~f~~~il~~m~~~~~~~~----~e~g~~~~l~~tPa-----------------E 422 (555)
T cd01675 364 TIGFIGLNEAAEALTGKGIGESEEAREFGIRILEHIRERADEFK----EETGLLYSVEATPA-----------------E 422 (555)
T ss_pred eEEEehHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEEccc-----------------c
Confidence 7999999998765 454544 99999999999999999887666 44452111222221 0
Q ss_pred cH-HH-HHHHHHhcC-CccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHh
Q 003602 599 DW-GG-LRDMISKNG-VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIK 675 (808)
Q Consensus 599 dW-~~-Lr~~i~~~G-~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~ 675 (808)
-+ .. .+.+-+++| + +-|.+. .|++.|-+
T Consensus 423 s~~~rfa~~D~~~~g~i----------------~~g~~d--~~yyTNS~------------------------------- 453 (555)
T cd01675 423 SLAYRFAKKDRKKYGDI----------------IPGVTD--KPYYTNSF------------------------------- 453 (555)
T ss_pred hHHHHHHHHHHHHcCcc----------------CCCCCC--CCCCCCCE-------------------------------
Confidence 00 11 144555677 2 122221 12222211
Q ss_pred hhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC--CChhHHHHHHHHHHHcCCc
Q 003602 676 NKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ--PNFGKLTSLHFHAWLRGLK 752 (808)
Q Consensus 676 ~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~--~~~~~l~~~~~~Awk~GlK 752 (808)
++ | --.++++-+.|+..+..|++.+-+...-+++++ ++++.+.++..+|.+.|+.
T Consensus 454 -----------hi---p--------v~~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~ 510 (555)
T cd01675 454 -----------HV---P--------VYEDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVI 510 (555)
T ss_pred -----------Ee---e--------CCCCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCc
Confidence 11 1 123366778899999999999999999999986 4788999999999997744
No 43
>PRK10977 hypothetical protein; Provisional
Probab=97.43 E-value=0.0095 Score=69.58 Aligned_cols=255 Identities=17% Similarity=0.185 Sum_probs=155.1
Q ss_pred eHHHHHHHHHHHHHhhCCcceeehhhHhhhCC-CCCCCceeeecCCcccccCCCCCcceeeec--cccChhhhhhhcCCC
Q 003602 385 QAQNLWFEILKSQIETGTPYMLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPTETAVCNL--ASIALPRYVREMGVP 461 (808)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~-~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL--~SInL~~~v~~~~~~ 461 (808)
+..+++.+.+++...+|.|.+++ |.++...- ....|.+ =|.|-+ + .+.||+ .+|||++.-...
T Consensus 190 tp~d~l~~A~e~~~~~g~P~f~N-d~~~i~~~~a~~ygi~----gC~~~l-~-----~g~GsigvVTINLpRIA~~a--- 255 (509)
T PRK10977 190 TPDDLLLLAAKNICECSKPHIAN-HPVHDKDFTKGGYGIV----SCYNSL-P-----LGGGAYTLVRLNLKEVAKRA--- 255 (509)
T ss_pred CCHHHHHHHHHHHhccCCCceec-CHhHHHhhcccCCcee----eeeccC-C-----CCcCCceeEEeeHHHHHHHC---
Confidence 44899999999999999999988 44443321 1223433 355543 1 234554 489999986541
Q ss_pred CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHH----HHh-cCCCCHHHHHH-Hh-hccCCc-eeecchHHHHHHH
Q 003602 462 MESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNK----IID-VNYYPVETARR-SN-LRHRPI-GIGVQGLADTFIL 533 (808)
Q Consensus 462 ~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~----vId-~~~yp~~~~~~-~~-~~~R~i-GlGv~Glad~L~~ 533 (808)
.+...|=.+.|.+.+.++...|+. +.+ .+.||++-..+ .. ...|=. -||+.|||.++..
T Consensus 256 -------------~~~e~F~~~~L~~~~~l~~e~l~~R~~~l~e~~~~~~~~fL~~eg~~~~d~f~~tiGiiGLaEav~~ 322 (509)
T PRK10977 256 -------------ESVDDFFDNVLPHYCQQMIEIIDARIRFLVEESNFFESSFLVKEGLIDPERFTPMFGIYGLAEAVNL 322 (509)
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHhhcCCccccccccCccHhHHHHHHHH
Confidence 112223334677778888777765 232 24577432111 10 112222 5999999999887
Q ss_pred c----CCC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCCCCccccCCCCCCcccHHHHHH
Q 003602 534 L----GMP--FD-STEAQQLNKDIFETIYYHALRTSSEIAAREGP-YETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRD 605 (808)
Q Consensus 534 ~----gi~--y~-S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~-~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~ 605 (808)
+ |.. |+ |+||.+|+.+|.++|...+ ++.|. | .+. |. -++
T Consensus 323 l~g~~g~~~~~g~seea~~l~~~Il~~m~~~~--------~e~~~~Y-g~~------~R-----------------f~~- 369 (509)
T PRK10977 323 LLEKEGLAARYGKDEAANELGYRISAQLAEIV--------ENTPVKY-GWG------GR-----------------ALL- 369 (509)
T ss_pred HhcCCCcccCcCCCHHHHHHHHHHHHHHHHHH--------HHhCCcc-Chh------hH-----------------HHH-
Confidence 6 333 43 8999999999999999433 34442 2 000 00 001
Q ss_pred HHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcc
Q 003602 606 MISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSV 685 (808)
Q Consensus 606 ~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv 685 (808)
..+.|+ +.. -+.|+|++
T Consensus 370 -~~q~G~-------------~~d-~~yTns~h------------------------------------------------ 386 (509)
T PRK10977 370 -HAQSGI-------------SSD-KGVTPGVR------------------------------------------------ 386 (509)
T ss_pred -HHHhCC-------------CCC-CCccCCeE------------------------------------------------
Confidence 001111 000 02222221
Q ss_pred cccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC---CChhHHHHHHHHHHHcCCceEEEEecCcc
Q 003602 686 QKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ---PNFGKLTSLHFHAWLRGLKTGMYYLRSRA 762 (808)
Q Consensus 686 ~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~---~~~~~l~~~~~~Awk~GlKt~~YY~r~~~ 762 (808)
+| --.++++-++|+..|..|+|..-+.+.-+++.. ++++-+.++-..|.+.|+.=.+.+.-...
T Consensus 387 -----iP--------V~~e~d~~eki~~ea~~h~~~tGG~i~i~~ld~~~~~NpeAl~~lvk~a~~~gi~Yfsin~~~~d 453 (509)
T PRK10977 387 -----IP--------YGDEPDPITHLQTSAPHHKYYPSGISDILTFDETIKRNPQALVDLCKGAFKAGMREFTANVSGND 453 (509)
T ss_pred -----ec--------CCCCCCHHHHHHhhcccCCccCCceEEEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCc
Confidence 11 123477888999999999999999988888853 46788999999999998887777776666
Q ss_pred ccccccccccccc
Q 003602 763 AADAIKFTVDTSV 775 (808)
Q Consensus 763 ~~~~~~~~~~~~~ 775 (808)
--+..-+-|.++.
T Consensus 454 ~vrvtgy~~~~s~ 466 (509)
T PRK10977 454 LVRVTGYMVKLSD 466 (509)
T ss_pred eEEEEeEEeeHHH
Confidence 6666666664443
No 44
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=97.35 E-value=0.0021 Score=75.95 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=121.2
Q ss_pred eHHHHHHHHHHHHHhhCCcceeehhhHhhhCCCCCCCceeeecCCcccccCCC---------CCcceeeecc--ccChhh
Q 003602 385 QAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTS---------PTETAVCNLA--SIALPR 453 (808)
Q Consensus 385 ~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~~~---------~~e~~~CNL~--SInL~~ 453 (808)
+..+||+..+++..+.|.|++.+...-....+. |+-..+... ......+|++ |||||+
T Consensus 224 ~~~~l~~~a~k~~~~~~~p~~~~~~~~~~~~~M-----------cCR~~l~~~~~~~~~~~~~~~~~~GnigvVTINLPR 292 (546)
T PF13597_consen 224 PNYDLFELAAKCGAKRFYPDFNSDLDPDDVRSM-----------CCRLRLSLNELGNGGGLFGSGDGTGNIGVVTINLPR 292 (546)
T ss_dssp TTHHHHHHHHHHHHHHS--EEEEHHHHHH---B-----------TTTB-----B-TTS-B-----TT-BEEEEEEEEHHH
T ss_pred chHHHHHHHHHHhHHhCCCCeecCCCCcceecc-----------ccccccChhhhccCCcceeccccccceeEEEecHHH
Confidence 567899999999999999999755532222111 111110000 0112345555 899999
Q ss_pred hhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHhhccCCceeecchHHHHHH
Q 003602 454 YVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTE-NLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532 (808)
Q Consensus 454 ~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr-~Ld~vId~~~yp~~~~~~~~~~~R~iGlGv~Glad~L~ 532 (808)
..-.. .++..| |.+|.+. ..+.| .+.+.++.+.||+-.......++-..-||+.||++++.
T Consensus 293 iA~~a----------------~~d~~~-f~~L~~~-~~~~r~~i~~~~~~~~~P~~~~~~~~~~~~~~tIG~iGL~Ea~~ 354 (546)
T PF13597_consen 293 IAYEA----------------KGDEDF-FEELDKL-MLAKRKVIKKLLEAGLYPFTKQYLWRLKNHFSTIGIIGLNEALQ 354 (546)
T ss_dssp HHHTT----------------EE-HHH-HHHHHHH-HHHHHHHHHHHHHGGG-HHHHTST-SHTTTTSEEEEE-HHHHHH
T ss_pred HHHHh----------------CCcHHH-HHHHHHH-HHHHHHHHHhhccCCcCchhHhhHhhhcCeeEeecHHHHHHHHH
Confidence 87541 011111 4555443 23333 56667778888875544434566778999999999998
Q ss_pred HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHHHHHHHhcC
Q 003602 533 LLGMP-FDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNG 611 (808)
Q Consensus 533 ~~gi~-y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G 611 (808)
.+|-. .+++||.+|+.+|.++|...+.+.+ +|.|
T Consensus 355 ~~g~~~~~~~~~~~f~~~Vl~~m~~~~~~~~----~e~g----------------------------------------- 389 (546)
T PF13597_consen 355 NFGGKHHESPEGREFALKVLEHMRDKADEFQ----EETG----------------------------------------- 389 (546)
T ss_dssp HH---------TS--HHHHHHHHHHHHHHHH----HHHS-----------------------------------------
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHH----HHHC-----------------------------------------
Confidence 87776 4789999999999999998776544 4434
Q ss_pred CccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCCcccccCCC
Q 003602 612 VRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQI 691 (808)
Q Consensus 612 ~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~i~~l 691 (808)
+.-+ +--.|++|+|.-+ ...|.++ |+-+ +.-.+.+.. + +
T Consensus 390 ~~f~--le~TPAEs~~~rf-----------------------------ak~D~~~-g~i~----~~~yytNs~--h---~ 428 (546)
T PF13597_consen 390 LLFN--LEATPAESLCYRF-----------------------------AKLDKEK-GIIT----DRDYYTNSF--H---L 428 (546)
T ss_dssp -EEE--EEE---TTHHHHH-----------------------------HHHHHHH----T----TTSS---TT-------
T ss_pred CCEE--EEECchhHHHHHH-----------------------------HHHHHhc-CCcC----CCCcccCCE--E---c
Confidence 3222 2224555553310 1111111 2110 000000100 1 1
Q ss_pred ChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHHHHHHHHH
Q 003602 692 PEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWL 748 (808)
Q Consensus 692 p~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~~~~~Awk 748 (808)
| .-.++++.+-|+..+..|++..-+--.-+++++ ++.+.+.++..+|.+
T Consensus 429 p--------v~~~~~~~ek~~~E~~~~~~~~GG~I~hv~l~e~~n~~al~~lv~~~~~ 478 (546)
T PF13597_consen 429 P--------VDEDIDPFEKIDLEAPFQKLYTGGHIFHVELGEKPNPEALEKLVRYAME 478 (546)
T ss_dssp ---------TTS---HHHHHHHHHHHHTTSTTB--EEEE----T-HHHHHHHHHHHHH
T ss_pred C--------CCCCCCHHHHHHhhcccccccCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1 123467777888999999999999999999986 566788888888887
No 45
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.25 E-value=0.0098 Score=70.97 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=77.2
Q ss_pred cceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHhcCCCCHHHHHH
Q 003602 440 ETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTE-------NLNKIIDVNYYPVETARR 512 (808)
Q Consensus 440 e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr-------~Ld~vId~~~yp~~~~~~ 512 (808)
-+++++--||||++..-.. .+...| |+.|.+.+.++.+ .|...+..+.+|+-...-
T Consensus 347 ~tGSigVVTINLPRia~~a----------------~~~~~F-~e~Ld~~lela~~~l~~~R~~l~~~~~~~~~P~~~~~~ 409 (623)
T PRK08271 347 NTGSINVITINLPRIAQEA----------------RDRDDF-LEILRERVDKIHKYQLAYREIMEERIAAGMLPLYDAGF 409 (623)
T ss_pred ccCCcceEEccHHHHHHHc----------------CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhh
Confidence 3556777799999987531 011112 4667777766654 355566778888766443
Q ss_pred HhhccCCceeecchHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 003602 513 SNLRHRPIGIGVQGLADTFILLGMP-FDSTEAQQLNKDIFETIYYHALRTS 562 (808)
Q Consensus 513 ~~~~~R~iGlGv~Glad~L~~~gi~-y~S~ea~~l~~~i~e~i~~~A~~aS 562 (808)
...+..-+-||+.||+.++..+|.. .+++|+.+|+.+|.++|...+.+.+
T Consensus 410 ~~l~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~f~~~il~~mr~~~~~~~ 460 (623)
T PRK08271 410 ISLDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQEVLKVIYEANEKAS 460 (623)
T ss_pred cccccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445899999999999999988 7899999999999999999887766
No 46
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=97.22 E-value=0.00065 Score=65.72 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=53.9
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcC----CCCCHHHHHHHHHHHHHhhccCCCChHHH
Q 003602 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVY----KGVTTSQLDELAAETAAAMTTNHPDYASL 77 (808)
Q Consensus 2 ~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~----~~itt~ei~~~~~~~a~~~~~~~p~y~~~ 77 (808)
.|+|+||++||||.+||..-|..||+.-+...-..+.++..+...|. ..|++.+|-+++.+....+ ++=.|-..
T Consensus 50 ~ViKkdG~re~Fdr~Kl~~gl~~Ac~KRpVs~e~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~L~~l--D~VAYVRF 127 (147)
T TIGR00244 50 TVIKQDGVREPFNREKLLRGMVRACEKRPVSFDDLEHAINHIEAQLRAQGEREVPSELIGQMVMQYLKKL--DEVAYIRF 127 (147)
T ss_pred EEEcCCCCCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhhc--Ccchhhhh
Confidence 59999999999999999999999999866222223345666666664 3689999999888765444 33355444
Q ss_pred H
Q 003602 78 A 78 (808)
Q Consensus 78 A 78 (808)
|
T Consensus 128 A 128 (147)
T TIGR00244 128 A 128 (147)
T ss_pred h
Confidence 4
No 47
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=96.94 E-value=0.0032 Score=60.90 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=53.9
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCC----CCCHHHHHHHHHHHHHhhccCCCChHHH
Q 003602 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYK----GVTTSQLDELAAETAAAMTTNHPDYASL 77 (808)
Q Consensus 2 ~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~----~itt~ei~~~~~~~a~~~~~~~p~y~~~ 77 (808)
.|||+||++||||.+||..-+..||+.-+...-..+.++..+..+|.. .|++.+|-+++.+....+ ++=.|-..
T Consensus 50 ~VvKkdg~Re~F~r~Kl~~gl~~A~~KRpVs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~VM~~Lk~l--D~VAYvRF 127 (156)
T COG1327 50 IVVKKDGRREPFDREKLRRGLIRACEKRPVSSEQIEEAVSHIERQLRSSGEREVPSKEIGELVMEELKKL--DEVAYVRF 127 (156)
T ss_pred eEECcCCCcCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhc--chhhhhhh
Confidence 489999999999999999999999998763222233455666666643 588999998888766544 33344444
Q ss_pred H
Q 003602 78 A 78 (808)
Q Consensus 78 A 78 (808)
|
T Consensus 128 A 128 (156)
T COG1327 128 A 128 (156)
T ss_pred h
Confidence 3
No 48
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.64 E-value=0.14 Score=61.38 Aligned_cols=202 Identities=17% Similarity=0.143 Sum_probs=114.7
Q ss_pred eeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHH---H----HHhc--CCCCHHHHHHH
Q 003602 443 VCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLN---K----IIDV--NYYPVETARRS 513 (808)
Q Consensus 443 ~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld---~----vId~--~~yp~~~~~~~ 513 (808)
++.--||||++.--.. ..+...| |+.|.+.+.++.+.|. . .++. ..||.-...-.
T Consensus 335 nigVVTINLPRIa~~a---------------~gd~~~F-~~~Ld~~lela~~~L~~kr~~~~~~~~~~~~l~P~~~~~l~ 398 (625)
T PRK08579 335 SVNVTTVNLPRIALEA---------------RGDDDKF-WELYEERLELVRITLDWFRERYVKLLKTYPEMYSMIKEYLE 398 (625)
T ss_pred ceeeEeccHHHHHHHh---------------CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHhch
Confidence 4444599999986430 0011112 4667777777766665 2 3333 45665221111
Q ss_pred hh-ccCCceeecchHHHHHHH-cCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccC
Q 003602 514 NL-RHRPIGIGVQGLADTFIL-LGMP--------FDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKG 583 (808)
Q Consensus 514 ~~-~~R~iGlGv~Glad~L~~-~gi~--------y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G 583 (808)
.. ++.-.-||+.||+.++.. .|.. -++++|.+++.+|.++|...+.+.+ +|.|--=+.+.+|.
T Consensus 399 ~~~~~~~~tIG~iGl~E~~~~~~G~~~~~~~~~~~~~~~~~~~~~~il~~mr~~~~~~~----~etg~~~nle~TPA--- 471 (625)
T PRK08579 399 EFPSSHFNTIGIIGLPEAAAIYLGEPKLWTEGSRRDWLEAAELMKKMVEFAVEKAREWM----KETGTPWNVEEVPG--- 471 (625)
T ss_pred hhhhCCEEEEEeehHHHHHHHHcCCCcccccCChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEEEccc---
Confidence 12 333479999999998765 6643 4567899999999999988776544 44553112222221
Q ss_pred CCCccccCCCCCCcccHHHHHHHHHhcCCccccccccCCCcchhhccCCCc-cccccccceeeEEcccCceEEeChHHHH
Q 003602 584 ILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNE-CFEPYTSNIYSRRVLSGEFVVVNKHLLH 662 (808)
Q Consensus 584 ~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~G~s~-gieP~~s~~y~R~~~~G~~~~vn~~l~~ 662 (808)
...--.-.|.|-+++|.- +. .++ +--|++.|-|.
T Consensus 472 ------------Es~~~Rfak~D~~~fg~i--------~~--------~~~~~~~~yYTNS~~----------------- 506 (625)
T PRK08579 472 ------------ESAAAKLAIKDLKLFPEL--------RE--------YLSDPENPIYSTSIA----------------- 506 (625)
T ss_pred ------------chHHHHHHHHHHHHcCCC--------cc--------cccCCCCCceeCcee-----------------
Confidence 000011223344566621 10 110 00133332211
Q ss_pred HHHHcCCCcHHHhhhhhccCCcccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC-CChhHHHH
Q 003602 663 DLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ-PNFGKLTS 741 (808)
Q Consensus 663 ~L~~~g~~~~~~~~~i~~~~Gsv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~-~~~~~l~~ 741 (808)
| + ..++++.+-|+..+..|++..-+--.-+++.+ ++.+.+.+
T Consensus 507 -----------------------------p-----v---~~~i~~~eki~~e~~~~~~~~GG~i~hi~l~E~pn~~al~~ 549 (625)
T PRK08579 507 -----------------------------P-----Y---YGPLELWDRIEIEEKVQQEFTGGVMMHIFLGEEPDPEALAK 549 (625)
T ss_pred -----------------------------e-----C---CCCCCHHHHHHhhccccccccCceEEEEEeCCCCCHHHHHH
Confidence 0 1 13466777889999999999998888888876 66778888
Q ss_pred HHHHHHHc
Q 003602 742 LHFHAWLR 749 (808)
Q Consensus 742 ~~~~Awk~ 749 (808)
+..++.+.
T Consensus 550 lv~~~~~~ 557 (625)
T PRK08579 550 LTKRIMNT 557 (625)
T ss_pred HHHHHHhc
Confidence 88888553
No 49
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=95.37 E-value=0.036 Score=69.54 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=46.4
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCC--------cCHHhHHHHHHhhcC------CCCCHHHHHHHHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEH--------CDPVLVSQKVCTGVY------KGVTTSQLDELAAETA 64 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~--------v~~~~i~~~~~~~~~------~~itt~ei~~~~~~~a 64 (808)
|.||||||++++||.+||..+|.+|...++... -....+..+|...+. +.++.+|||+++.++.
T Consensus 34 ~~VIKRDG~~v~Fd~~KI~~AI~KA~~av~~~~~~~~~~~~~~~~~l~~~V~~~l~~~~~~~~~vsVEeIQD~VE~~L 111 (965)
T PRK07207 34 YKVIRRNGSVVPFEPSKIAVAMTKAFLAVEGGQAAASARVRETVEQLTEQVVRALVRRRPSGGTFHIEDIQDQVELAL 111 (965)
T ss_pred eEEEecCCccCCCCHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999876542100 112345555555443 2699999999877665
No 50
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=94.83 E-value=0.41 Score=57.02 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=78.6
Q ss_pred CcceeeeccccChhhhhhhcCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH----HHHHHHHhcCCCCHHHHHHHh
Q 003602 439 TETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVT----ENLNKIIDVNYYPVETARRSN 514 (808)
Q Consensus 439 ~e~~~CNL~SInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~av----r~Ld~vId~~~yp~~~~~~~~ 514 (808)
.-+++++--+|||++..-.. . |++++-++++-+. ..|...++.+.||+-......
T Consensus 319 ~~tGSigVVTINLPRia~~a-------------------~--~L~~~l~la~~~L~~kr~~l~~~~~~g~~P~~~~~~~~ 377 (586)
T TIGR02827 319 VATGSINVITINMNRLVQDS-------------------R--DLAHEVEKIHKYQVAYRELMKEYLAAGLLPLYDAGFIT 377 (586)
T ss_pred CcccccceEEecHHHHHHHh-------------------C--CHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHhhhcc
Confidence 34667778899999987531 1 2444444443322 256667777889987665544
Q ss_pred hccCCceeecchHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003602 515 LRHRPIGIGVQGLADTFILLGMP-FDSTEAQQLNKDIFETIYYHALRTSSEIAAREGP 571 (808)
Q Consensus 515 ~~~R~iGlGv~Glad~L~~~gi~-y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~ 571 (808)
.+..-.-||+.||+.++..+|.. -+|+||.+|+.+|.++|+..+.+.+ +|.|-
T Consensus 378 ~~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~fa~~vl~~mr~~~~~~~----~etG~ 431 (586)
T TIGR02827 378 LDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQNVLKVIYEANQKAY----HEYGF 431 (586)
T ss_pred cccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence 45566899999999999888987 5799999999999999999888666 55663
No 51
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=93.94 E-value=0.16 Score=64.47 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=45.1
Q ss_pred CeEEecCCceeecChHHHHHHHHHHHccCCCCC----c---C---H----HhHHHHHHhhcC--CCCCHHHHHHHHHHHH
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEH----C---D---P----VLVSQKVCTGVY--KGVTTSQLDELAAETA 64 (808)
Q Consensus 1 ~~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~----v---~---~----~~i~~~~~~~~~--~~itt~ei~~~~~~~a 64 (808)
|+|+||||+.++||.+||..+|++|...+.... . + . ..++..+...+. ..+++++||+....+.
T Consensus 9 ~~ViKRDG~~v~Fd~~KI~~AI~kA~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~i~~~~~vsVEeIQDmVE~~L 88 (1046)
T PRK12365 9 YTIVKRNGMFVPFNQNRIFQALEAAFRDTRSLEDHSPLPEDLESSIRSITHQVVKEVVQKITEGQVVTVERIQDMVESQL 88 (1046)
T ss_pred eEEEecCCccCCCCHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999876542100 0 0 1 234445555443 2699999999887665
No 52
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=88.01 E-value=17 Score=41.85 Aligned_cols=263 Identities=16% Similarity=0.172 Sum_probs=164.3
Q ss_pred EEEeHHHHHHHHHHHHHhhCCcceeehhhHhhhCC-CCCCCceeeecCCcccccCCCCCcceeeeccccChhhhhhhcCC
Q 003602 382 KVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSN-QQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGV 460 (808)
Q Consensus 382 ~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~Nr~~~-~~~~G~I~~sNlC~EI~~~~~~~e~~~CNL~SInL~~~v~~~~~ 460 (808)
..+...++...-++++.+++.|-+.+- .+++..- ....|.+.|=| .+.- --+...|.-+||.......
T Consensus 173 ~~~Tpdd~~~~A~~~~l~csKP~faN~-~~~~~~~~~~~ygIvSCYN----~Lp~----~GGa~TLvRlnL~~vA~~a-- 241 (487)
T PF11230_consen 173 PEITPDDFAEQAIENILECSKPHFANH-PMHRKDFGEGDYGIVSCYN----SLPL----GGGAYTLVRLNLKEVAKRA-- 241 (487)
T ss_pred CCCCcHHHHHHHHHHHHhcCCchhcCC-HhHHHhcCCCCeeEEEecc----cccc----CCcchhhhhhhHHHHHHHc--
Confidence 466788999999999999999999753 2333321 12345444444 3211 1345778889999886541
Q ss_pred CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCC----HHHHHHHhhccCCce-eecchHHHH
Q 003602 461 PMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDV-----NYYP----VETARRSNLRHRPIG-IGVQGLADT 530 (808)
Q Consensus 461 ~~~~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~vId~-----~~yp----~~~~~~~~~~~R~iG-lGv~Glad~ 530 (808)
.+...|=-+.|-+.+..+.+++|.=|+. ++|. +.|- -.++.|=.| -|+.|||+.
T Consensus 242 --------------~~~~dF~~~~LP~~~~~~~~~md~R~~flvEeS~FFessFLvkEG--lI~~~rF~~MFGi~GlAEa 305 (487)
T PF11230_consen 242 --------------KDIEDFLNNVLPYYCDLMLEYMDARIRFLVEESNFFESSFLVKEG--LIERDRFTPMFGIVGLAEA 305 (487)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcc--ccchhhcchHhHHHHHHHH
Confidence 1111132356778888888888876642 3332 2221 123445555 499999986
Q ss_pred ----HHHcCC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCCCCccccCCCCCCcccHHHH
Q 003602 531 ----FILLGM--PFD-STEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGL 603 (808)
Q Consensus 531 ----L~~~gi--~y~-S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~L 603 (808)
|.+.|. .|+ |++|-+|..+|++.|... .+. +| .+|+.|+
T Consensus 306 VN~Ll~~eg~~~~yG~~~~An~Lg~~I~~~l~~~--------V~~---~~----~~y~~~~------------------- 351 (487)
T PF11230_consen 306 VNILLEKEGKEERYGHDEEANELGVRIMEKLAEI--------VKS---HP----VKYCEGT------------------- 351 (487)
T ss_pred HHHHHhccCCccccCCChHHHHHHHHHHHHHHHH--------Hhc---CC----Ccccccc-------------------
Confidence 333344 786 789999999999876542 221 11 2232221
Q ss_pred HHHHHhcCCccccccccCCCcchhhccCCCccccccccceeeEEcccCceEEeChHHHHHHHHcCCCcHHHhhhhhccCC
Q 003602 604 RDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDG 683 (808)
Q Consensus 604 r~~i~~~G~RNs~l~AiaPT~stS~i~G~s~gieP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~G 683 (808)
.| ...|-|. .| +|.=.|+|+|+.=+ .|
T Consensus 352 ------~g--r~lLHAQ--vG-i~~D~~~TPG~RIp----------~G-------------------------------- 378 (487)
T PF11230_consen 352 ------GG--RFLLHAQ--VG-ISSDKGVTPGVRIP----------YG-------------------------------- 378 (487)
T ss_pred ------CC--EEEEEec--cC-ccccCCCCCCCcCc----------CC--------------------------------
Confidence 01 1122222 12 34446777764311 01
Q ss_pred cccccCCCChHHHhhhhchhccChHHHHHHHHHhCCccccccceeEeeCC---CChhHHHHHHHHHHHcCCceEEEEecC
Q 003602 684 SVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQ---PNFGKLTSLHFHAWLRGLKTGMYYLRS 760 (808)
Q Consensus 684 sv~~i~~lp~~~k~~y~tA~ei~~~~~i~~~a~~Q~~vDQs~S~nl~~~~---~~~~~l~~~~~~Awk~GlKt~~YY~r~ 760 (808)
-|-++-+||...|...+|-..++|=-+-+++ .+++-+.++..=|.+.|.+=.+.|.-.
T Consensus 379 -------------------~EP~~~~hl~~~A~~H~yfpsGi~DIf~~d~T~k~NP~A~ldi~kGAf~~G~Ryfs~y~~~ 439 (487)
T PF11230_consen 379 -------------------EEPDLVDHLQASAPFHKYFPSGIGDIFTFDETVKNNPEALLDICKGAFSLGMRYFSAYVSD 439 (487)
T ss_pred -------------------CCCCHHHHHHHhcccccCCCCCcccccccchhhHhCHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 1224566888899999999999997666664 356788899999999999999999888
Q ss_pred ccccccccccccccccc
Q 003602 761 RAAADAIKFTVDTSVLK 777 (808)
Q Consensus 761 ~~~~~~~~~~~~~~~~~ 777 (808)
..--+..-+-|.++.+.
T Consensus 440 sDlVRVTGYlVK~Sdie 456 (487)
T PF11230_consen 440 SDLVRVTGYLVKRSDIE 456 (487)
T ss_pred CceEEEeeeeehhhhHH
Confidence 77777777777766544
No 53
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=69.68 E-value=10 Score=46.21 Aligned_cols=150 Identities=24% Similarity=0.228 Sum_probs=82.6
Q ss_pred HHHHHHHhh-CCcceeehhhHhhhCCCCCCCcee-----eecCCcccccCCCCCcceeeecc--ccChhhhhhhcCCCCC
Q 003602 392 EILKSQIET-GTPYMLFKDTCNKKSNQQNLGTIK-----SSNLCTEVIQYTSPTETAVCNLA--SIALPRYVREMGVPME 463 (808)
Q Consensus 392 ~I~~~~~et-G~P~i~f~D~~Nr~~~~~~~G~I~-----~sNlC~EI~~~~~~~e~~~CNL~--SInL~~~v~~~~~~~~ 463 (808)
.|.+.+.+. |.||.....+.-..- -.|.+. .|+|+......-.......+||+ +||||+.--..
T Consensus 348 ~i~~~a~~~~~~~~~~n~l~~D~~~---~~g~~~~~MgCR~~l~~~~~~~~~~~~~~~gn~~vvTlNLPRiA~~a----- 419 (700)
T COG1328 348 DLFQLAAAKFGKRYFPNMLNYDWVV---LTGTFKNAMGCRTFLSGNETGDGEGDTLGTGNLGVVTLNLPRIALEA----- 419 (700)
T ss_pred HHHHHHHHhcCCccccchhhhhhhh---cCCCcceecchhhcccccccCCcccccccccceeeEEEeccHHHHHh-----
Confidence 444444444 888876443321110 112222 24455544433222334567776 89999986431
Q ss_pred CCCCcccccCCCCCCCCCHHHHHHHHHHHHHHHHHH-------HhcC-CCCH-H----------HHHHHhhccCCceeec
Q 003602 464 SHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKI-------IDVN-YYPV-E----------TARRSNLRHRPIGIGV 524 (808)
Q Consensus 464 ~~~~~~~g~~~~~~~~fD~e~L~~~v~~avr~Ld~v-------Id~~-~yp~-~----------~~~~~~~~~R~iGlGv 524 (808)
..+...| |+.|++.+.++...|.-- +.-+ .|+. . -+.......-.+.+|.
T Consensus 420 ----------~gD~~kf-~e~l~~~lei~keaL~~r~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~s~g~ 488 (700)
T COG1328 420 ----------KGDDDKF-FEILHERLEIAKEALLIRRERLKELIAKNALYMVGALGGRLNQEFDGSTIFRNGRATISLGF 488 (700)
T ss_pred ----------cCChhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccccccccchhhhhccccceEEEee
Confidence 0011112 466666666665554433 2222 1111 0 1112223445689999
Q ss_pred chHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 003602 525 QGLADTFILLGM--PFDSTEAQQLNKDIFETIYYHALR 560 (808)
Q Consensus 525 ~Glad~L~~~gi--~y~S~ea~~l~~~i~e~i~~~A~~ 560 (808)
.|++.++..+.- -++|+||..+..++.+.|+.++.+
T Consensus 489 igl~E~l~~~~g~~~~~~~ea~~~~~~iv~~~~~~~~~ 526 (700)
T COG1328 489 IGLNEMLKYLTGEHLHESEEAKKFGIKIVEYIREYADK 526 (700)
T ss_pred cchHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999988543 236999999999999999987764
No 54
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=56.10 E-value=24 Score=30.52 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHccCCCCCcCHHhHHHHHHhhcCCCCCHHHHHHHH
Q 003602 14 HFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELA 60 (808)
Q Consensus 14 ~~~ki~~~i~~~~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~ 60 (808)
|++.+++.....-.+ |++.+|...=..-+.+||+.+|++.++
T Consensus 14 ~~e~vk~~F~~~~~~-----Vs~~EI~~~Eq~Li~eG~~~eeiq~LC 55 (71)
T PF04282_consen 14 DPEEVKEEFKKLFSD-----VSASEISAAEQELIQEGMPVEEIQKLC 55 (71)
T ss_pred CHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 678888888877655 677777655444456999999999875
No 55
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=40.31 E-value=62 Score=27.67 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003602 540 STEAQQLNKDIFETIYYHALRTSSEIAAREGP 571 (808)
Q Consensus 540 S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~ 571 (808)
++++.++.-+|++..-...+..||.|||.||.
T Consensus 19 d~~vee~Ll~laddFv~~v~~~ac~lAKhR~s 50 (68)
T PF03847_consen 19 DPDVEELLLELADDFVDDVVSFACRLAKHRKS 50 (68)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 47889999999999999999999999999985
No 56
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=40.08 E-value=96 Score=38.18 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=41.8
Q ss_pred eEEecCCceeecChHHHHHHHHHHHccCCCCCcCH---H----hHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003602 2 YVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDP---V----LVSQKVCTGVYKGVTTSQLDELAAETA 64 (808)
Q Consensus 2 ~v~KrdG~~e~~~~~ki~~~i~~~~~~l~~~~v~~---~----~i~~~~~~~~~~~itt~ei~~~~~~~a 64 (808)
.|+||||+..+||..||..+|..+.+-.+. .|+ . .|.+++.. +...+...++|..+...-
T Consensus 4 ~vikrDg~~~~fd~~~i~~ai~~a~~~~~~--~d~~~~~~~~~~i~~~i~~-~~~~~~i~~iq~~ve~~l 70 (700)
T COG1328 4 VVIKRDGRVAEFDRNKIINAVRKAAKEIES--FDIAKALIRATGVDEEVAR-IAREVEIEEIQLLVEYLL 70 (700)
T ss_pred eeEeeccccccchHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhh-HhhhhhHHHHHHHHHHHH
Confidence 589999999999999999999999876542 231 1 23334433 455666777777665544
No 57
>PRK15329 chaperone protein SicP; Provisional
Probab=34.72 E-value=43 Score=32.58 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=26.4
Q ss_pred EEeHHHHHHHHH---HHHHhhCCcceeehhhH
Q 003602 383 VVQAQNLWFEIL---KSQIETGTPYMLFKDTC 411 (808)
Q Consensus 383 ~v~Ar~L~~~I~---~~~~etG~P~i~f~D~~ 411 (808)
.+.+.++|++++ ....+.|.|.+.|.|..
T Consensus 57 ~~~~~~i~~~~l~~N~~l~e~g~g~l~y~e~~ 88 (138)
T PRK15329 57 PVAGDSIWRQILVINLELAENGEGTLAYIDAA 88 (138)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCceEEEcccC
Confidence 566899999999 89999999999999876
No 58
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=32.53 E-value=95 Score=26.66 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 003602 539 DSTEAQQLNKDIFETIYYHALRTSSEIAAREGP 571 (808)
Q Consensus 539 ~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G~ 571 (808)
=+++|.++..++.|.......+.|++|||.+|.
T Consensus 20 ~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~ 52 (72)
T cd07981 20 LDPDVEELLLEIADDFVDDVVEDACRLAKHRKS 52 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999999999999985
No 59
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=27.79 E-value=54 Score=35.22 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=54.5
Q ss_pred eecchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCCCCccccCCCCCCcccH
Q 003602 522 IGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREG-PYETYHGSPVSKGILQPDMWGVNPSDRWDW 600 (808)
Q Consensus 522 lGv~Glad~L~~~gi~y~S~ea~~l~~~i~e~i~~~A~~aS~eLAke~G-~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW 600 (808)
+|.-||+.+|..+++..==+.. |=....|...| ++.|||.| ||-.|++-+|... .|.|-. -.+|
T Consensus 53 l~~e~l~~~l~e~~i~llIDAT----HPyAa~iS~Na----~~aake~gipy~r~eRP~~~~~---gd~~~~----V~d~ 117 (257)
T COG2099 53 LGAEGLAAFLREEGIDLLIDAT----HPYAARISQNA----ARAAKETGIPYLRLERPPWAPN---GDNWIE----VADI 117 (257)
T ss_pred CCHHHHHHHHHHcCCCEEEECC----ChHHHHHHHHH----HHHHHHhCCcEEEEECCccccC---CCceEE----ecCH
Confidence 7889999999999987622222 22233334433 46799999 8999999999763 344432 2479
Q ss_pred HHHHHHHHhcCCcccccc
Q 003602 601 GGLRDMISKNGVRNSLLV 618 (808)
Q Consensus 601 ~~Lr~~i~~~G~RNs~l~ 618 (808)
+++-+.+++.| |+-.++
T Consensus 118 ~ea~~~~~~~~-~rVflt 134 (257)
T COG2099 118 EEAAEAAKQLG-RRVFLT 134 (257)
T ss_pred HHHHHHHhccC-CcEEEe
Confidence 99988888887 444443
No 60
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=20.75 E-value=1.4e+02 Score=25.57 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=12.7
Q ss_pred cchHHHHHHHcCCCC
Q 003602 524 VQGLADTFILLGMPF 538 (808)
Q Consensus 524 v~Glad~L~~~gi~y 538 (808)
.+-|||+|.+.|+||
T Consensus 4 ATdlAD~LVr~GipF 18 (70)
T PF14698_consen 4 ATDLADYLVRKGIPF 18 (70)
T ss_dssp HHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHcCCCH
Confidence 467999999999999
Done!