Query 003602
Match_columns 808
No_of_seqs 244 out of 1646
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 17:52:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003602.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1652-1655//hhsearch_pdb/003602hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnc_A Ribonucleoside-diphosph 1.0 1 1 1771.2 67.8 789 1-808 1-792 (792)
2 3k8t_A Ribonucleoside-diphosph 1.0 1 1 1748.6 57.9 760 1-775 1-760 (888)
3 2wgh_A Ribonucleoside-diphosph 1.0 1 1 1506.0 58.8 671 75-764 2-672 (676)
4 2xap_A Ribonucleoside-diphosph 1.0 1 1 1502.1 56.0 703 1-769 5-743 (761)
5 1peq_A Ribonucleoside-diphosph 1.0 1 1 1328.0 43.6 632 68-765 10-701 (714)
6 3o0q_A Ribonucleoside-diphosph 1.0 1 1 1283.3 50.0 577 131-766 3-637 (644)
7 1l1l_A Ribonucleoside triphosp 1.0 1 1 917.6 31.0 511 127-765 11-685 (739)
8 1dq3_A Endonuclease; PI-PFUI, 1.0 1 1 68.8 -12.8 68 248-316 1-68 (454)
9 1h7b_A Anaerobic ribonucleotid 1.0 1 1 27.6 17.5 251 386-751 250-531 (605)
10 3rk6_A Polyadenylate-binding p 1.0 1 1 15.6 3.2 66 15-84 20-85 (234)
No 1
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=1.00 E-value=1 Score=1771.17 Aligned_cols=789 Identities=68% Similarity=1.153 Sum_probs=760.6
Q ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 94880299253138678999999988039998768796999987002999998899999999998523399986999999
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (808)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~a~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~r 80 (808)
|+|+||||++|||+++||+++|+|+|+||+.++||+++|+.++..+++|||||+||++++|++|++|+++||||+++|||
T Consensus 1 ~~v~kr~G~~e~~~~~ki~~~i~~~~~gl~~~~v~~~~i~~~~~~~~~~gitt~el~~~~~~~a~~~~~~~pdy~~~AaR 80 (792)
T 3hnc_A 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLAAETAATLTTKHPDYAILAAR 80 (792)
T ss_dssp -------------CHHHHHHHHHTTCTTSCTTTCCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHGGGTCTHHHHHHHH
T ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 94894699454368999999999996467855679999999998534699998999999999999865539878999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998878741322599999997612102875557662699999981999966520135689881559999986335349
Q 003602 81 IVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (808)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~~ 160 (808)
|++++|||++.++|++.+.++|+++++++|+..+++++++++++++|+++|++.|+|+||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~rD~~f~y~g~~~L~~rYllk~~ 160 (792)
T 3hnc_A 81 IAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN 160 (792)
T ss_dssp HHHHHHHHTSCSCHHHHHHHHHSCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHHCCGGGGGGSCHHHHHHHHHHTSCEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999998887788999999877751455342376899999999999997758443348986899999961562529
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 93048989999999835215896899999999862926436620014688887666632101248987889999999999
Q 003602 161 GKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240 (808)
Q Consensus 161 g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (808)
|+++|+||+||||||++++.++++++++||++||+++|+||||||+|+||+++|||||||+++.+||++||+++++++++
T Consensus 161 g~~~E~pq~~~~rVA~~l~~~~~~~a~~~y~~ls~~~f~~aTPtl~NaGt~~~qlsSCFl~~v~~Dsl~~I~~~~~~~a~ 240 (792)
T 3hnc_A 161 GKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDTLKQCAL 240 (792)
T ss_dssp TEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98615799999999988600269999999999971770469826643899888777434137788669999999999999
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99742975211102237997335788865675327999999999975189743563177326986548999994230584
Q 003602 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK 320 (808)
Q Consensus 241 i~k~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~ 320 (808)
++|+|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+|||++|+||.|+||++|||||++||++|+++|+
T Consensus 241 isk~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~R~GA~~vyL~~wHpDI~eFl~~K~~~g~ 320 (792)
T 3hnc_A 241 ISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGK 320 (792)
T ss_dssp HHHTTCEEEEECTTSCCTTCEETTTTEECCCSHHHHHHHHHHHHHCCCC------CEEEEECTTBTTHHHHTTSCC----
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98717975674101377788366889888985219998889999998089854663478955888349999997420570
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 21111234200224989899987399678866799998600022279999999987194038982899999999998961
Q 003602 321 EEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400 (808)
Q Consensus 321 e~~r~~~l~~sv~i~D~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~et 400 (808)
+++|++++|+||||||+||+||++|++|+||+|+++|+|+++||++|+++|++||++|..+++|+||+||++|++++|+|
T Consensus 321 e~~r~~~l~~sv~ipD~Fm~~v~~d~~w~Lf~P~~~p~L~~~yg~ef~~~Y~~~e~~g~~~k~v~AreLw~~I~~~~~et 400 (792)
T 3hnc_A 321 EEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTET 400 (792)
T ss_dssp -----CCEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHTTCCSEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHEECHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 76767647000022999999998599778767544762887752688999999986797306866999999999999996
Q ss_pred CCCCEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97512520347631797888824420598323347899963122416667013442119887888875445579998777
Q 003602 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480 (808)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~s~~~e~~~CnL~sInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (808)
|+|||+|+|+||++||+++.|+|++||||+||+||++++++++|||+||||++|+.. +..|
T Consensus 401 G~P~i~f~D~~N~~~~~~~~G~I~~SNlC~EI~~~~~~~e~~vCNLgSiNL~~~v~~-------------------~~~f 461 (792)
T 3hnc_A 401 GTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS-------------------EHTY 461 (792)
T ss_dssp SCSEEEEHHHHHHTCTTGGGCCCCCCCSSSCCCCCCBTTBCEEECEEEEEGGGGBCT-------------------TSCB
T ss_pred CCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECHHCCHHHHHCC-------------------CCCC
T ss_conf 898143455687468887678389863714536789998642463212019988366-------------------6786
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98899999999999999998408997799999861049802225049999998299999899999999999999999999
Q 003602 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALR 560 (808)
Q Consensus 481 D~e~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~s~ea~~l~~~i~e~i~~~a~~ 560 (808)
||+.|+++|+++||+||+|||.+.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++
T Consensus 462 D~~~l~~~v~~avr~Ld~vID~~~yP~~~~~~~~~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~ 541 (792)
T 3hnc_A 462 DFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALE 541 (792)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999727883499999988706120068789999997699879999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 99999998199999989967668877655578999826479899999732875542002599954010048975222355
Q 003602 561 TSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (808)
Q Consensus 561 aS~~LAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~t~gieP~~ 640 (808)
||++||+|+|+||.|++|+|++|++|||.|+..|+..+||++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 542 aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiAPTgS~S~i~g~t~gIEP~~ 621 (792)
T 3hnc_A 542 ASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYT 621 (792)
T ss_dssp HHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCTTSCHHHHHHHHHHHCCSCSCCBCCCCCHHHHHHHTCCCTTCCCS
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCH
T ss_conf 99999998598988777822135542333047845665499999999873665301205577504788708987528352
Q ss_pred CCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHCCCHHHHHHHHHHHCCC
Q ss_conf 44156771357337747678999998599908886333326995013699986788602000026969999999983773
Q 003602 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720 (808)
Q Consensus 641 ~~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsi~~~~~ip~~~k~~f~tA~ei~~~~~i~~~a~~Q~~ 720 (808)
+++|+|++.+|+|.++|++|+++|+++|+|+++++++|+.++||+|++|.+|++++++|+|||||+|+++|+|+|++|||
T Consensus 622 s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~i~~lp~~~~~~y~tA~eI~~~~~I~m~A~~Q~~ 701 (792)
T 3hnc_A 622 SNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAF 701 (792)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTTCTTSCHHHHHHTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 17999985058458647999999997499939999999864997136767997798884059738999999999997675
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-C-C-CCCHHHHHCCCCCC
Q ss_conf 3246400474089996689999999998299638999458532222012222000025999-8-8-96034321034566
Q 003602 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSVLKENPK-V-T-DDDDAKMAQMVCSL 797 (808)
Q Consensus 721 vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~ 797 (808)
||||||+|||+++++.++|.++|++|||+||||++||+|+++++++++|||+....+...+ + . .......++++|++
T Consensus 702 IDqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (792)
T 3hnc_A 702 IDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEEKERNTAAMVCSL 781 (792)
T ss_dssp CSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC---------------------------------------
T ss_pred CHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33011454635899999999999999984898689985163001003310653431245555420013455301021778
Q ss_pred CCCCCCCCCCC
Q ss_conf 77663356899
Q 003602 798 TNREECMACGS 808 (808)
Q Consensus 798 ~~~~~c~~c~~ 808 (808)
+|+|.||+|||
T Consensus 782 ~~~~~c~~c~~ 792 (792)
T 3hnc_A 782 ENRDECLMCGS 792 (792)
T ss_dssp -----------
T ss_pred CCCCCCCCCCC
T ss_conf 99400222479
No 2
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=1.00 E-value=1 Score=1748.65 Aligned_cols=760 Identities=65% Similarity=1.131 Sum_probs=739.4
Q ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 94880299253138678999999988039998768796999987002999998899999999998523399986999999
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAAR 80 (808)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~a~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~r 80 (808)
|+|+||||++|||+++||+++|+|+|+||+.++||+.+|+.++..+++|||||+||++++|++|++|+.+||||+++|||
T Consensus 1 ~~V~krdG~~e~~~~~ki~~~i~~~~~gl~~~~v~~~~i~~~~~~~~~~gitt~el~~~~i~~a~~~~~~~Pdy~~~AaR 80 (888)
T 3k8t_A 1 MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAAR 80 (888)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEECCCCEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 94892699654468999999999997156756779999999999754699988999999999999735218778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99998878741322599999997612102875557662699999981999966520135689881559999986335349
Q 003602 81 IVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ 160 (808)
Q Consensus 81 l~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~~ 160 (808)
|++++|||++.++|++++.++|+|++.++|+..+++++++|+++++|+++|++.|+|+||+.|+|+|+++|+++||+|.+
T Consensus 81 l~~~~l~k~~~~~f~~~~~~~~~~~~~~~g~~~~li~~~~~~~~~~~~~~L~~~i~~~RD~~f~y~g~~~L~~rYllk~~ 160 (888)
T 3k8t_A 81 IAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFKTLERSYLLRIN 160 (888)
T ss_dssp ---------CCCCHHHHHHHHHTCEETTTTEECCSSCHHHHHHHHHTHHHHHTTCCGGGGGGSCHHHHHHHHHHTSCEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999987655378999998740430554343477899999999999997747211468986889999863454649
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 93048989999999835215896899999999862926436620014688887666632101248987889999999999
Q 003602 161 GKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDTLKECAI 240 (808)
Q Consensus 161 g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~ 240 (808)
|+++|+||+||||||++|+.++++++++||++||+++|+||||||+|+||+++|||||||+++.+||++||+++++++++
T Consensus 161 g~~~E~pq~~~mRVA~~la~~~~~~a~~fY~~ms~~~f~paTPtL~NAGt~~~qlsSCFll~~~~DSl~gI~~~~~~~a~ 240 (888)
T 3k8t_A 161 GQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLFNAGTPKPQMSSCFLVAMKEDSIEGIYDTLKECAL 240 (888)
T ss_dssp TEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98702899999999998662369999999999970881259866534899988777533247787518999999999999
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99742975211102237997335788865675327999999999975189743563177326986548999994230584
Q 003602 241 ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGK 320 (808)
Q Consensus 241 i~k~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~ 320 (808)
++|+|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+|||++|+||+|+||++|||||++||++|+++|+
T Consensus 241 isK~GGGiG~~~s~iR~~Gs~I~g~~g~ssG~Vpfmkv~d~~~~~v~QgG~~RrGA~~vyL~vwHpDI~eFL~~K~~~g~ 320 (888)
T 3k8t_A 241 ISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGK 320 (888)
T ss_dssp HHTTCCEEEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHHHCCTTC---CCCEEEEECTTBTTHHHHTTTTCSSSC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 99847876313455377878046889877986009998999999998089853663468855887109999998651481
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf 21111234200224989899987399678866799998600022279999999987194038982899999999998961
Q 003602 321 EEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIET 400 (808)
Q Consensus 321 e~~r~~~l~~sv~i~D~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~et 400 (808)
+++|++++|+||||||+||+||++|++|+||+|+++|+|+++||++|+++|++||+++.. ++|+||+||++|++++|+|
T Consensus 321 e~~R~~~l~~sV~IpD~FMe~V~~d~~w~Lf~P~~~p~L~d~yG~eFe~~Y~~ye~~g~~-k~V~AreLw~~I~~~~~et 399 (888)
T 3k8t_A 321 EEIRARDLFPALWIPDLFMKRVEENGTWTLFSPTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTET 399 (888)
T ss_dssp STTCCTTEEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCHHHHHHHHHHHHHTTCS-EEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCEEEEEECHHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHCCCE-EEEEHHHHHHHHHHHHHHH
T ss_conf 656464172121109999999866998798566457507665146899999999865971-4877999999999999984
Q ss_pred CCCCEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97512520347631797888824420598323347899963122416667013442119887888875445579998777
Q 003602 401 GTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYF 480 (808)
Q Consensus 401 G~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~s~~~e~~~CnL~sInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~f 480 (808)
|+|||+|+|+||++||+++.|+|++||||+||+||+.++++++|||+||||++|+..+. ......|
T Consensus 400 G~P~i~f~D~iNr~n~~~~~G~I~~SNlC~EI~~~~~~~e~avCNLgSINL~~fv~~~~--------------~~~~~~f 465 (888)
T 3k8t_A 400 GTPFVVYKDACNRKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSE--------------DGKTSTY 465 (888)
T ss_dssp SCCEEEEHHHHHHTCTTTTTCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGGGGBC-------------------CCCCB
T ss_pred CCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCC--------------CCCCCCC
T ss_conf 89858862677726998667818884366664677899971388327853999962203--------------4554667
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98899999999999999998408997799999861049802225049999998299999899999999999999999999
Q 003602 481 DFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALR 560 (808)
Q Consensus 481 D~e~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~s~ea~~l~~~i~e~i~~~a~~ 560 (808)
||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++
T Consensus 466 D~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~I~~~A~~ 545 (888)
T 3k8t_A 466 NFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASME 545 (888)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998725883799999977369723249999999997799879999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 99999998199999989967668877655578999826479899999732875542002599954010048975222355
Q 003602 561 TSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYT 640 (808)
Q Consensus 561 aS~~LAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~t~gieP~~ 640 (808)
||++||+|+|+||.|++|+|++|+|++|.|+..|+..+||++||++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 546 AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~~p~~~~dW~~Lre~I~k~GlRNs~llAiAPTgSiS~I~g~s~sIEP~f 625 (888)
T 3k8t_A 546 ASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVT 625 (888)
T ss_dssp HHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCCSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCS
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCHHHCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCH
T ss_conf 99999998588988777810146641222037861220499999999762854304637899503777338776427351
Q ss_pred CCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHCCCHHHHHHHHHHHCCC
Q ss_conf 44156771357337747678999998599908886333326995013699986788602000026969999999983773
Q 003602 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCY 720 (808)
Q Consensus 641 ~~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsi~~~~~ip~~~k~~f~tA~ei~~~~~i~~~a~~Q~~ 720 (808)
+++|.|++.+|+|+++|++|+++|+++|+|++++++.|+.++|++|.+|.+|++++++|+|||||+|+++|+|+|++|||
T Consensus 626 s~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~ip~lp~~~k~~f~tA~eI~~~~~I~m~A~~Q~~ 705 (888)
T 3k8t_A 626 SNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVY 705 (888)
T ss_dssp CSBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTTCCTTCTTSCHHHHHHTCCGGGSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 14676433057504427999999997499809999999863996605877997898984217508999999999997675
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 3246400474089996689999999998299638999458532222012222000
Q 003602 721 IDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADAIKFTVDTSV 775 (808)
Q Consensus 721 vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~~~~~~~~~~~ 775 (808)
||||||+|||+++++.++|.++|++||++||||+|||+|+++++++++|||+...
T Consensus 706 IDQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a~~~~~~t~~~~~ 760 (888)
T 3k8t_A 706 IDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKI 760 (888)
T ss_dssp CSSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC--------------
T ss_pred CHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCHHH
T ss_conf 3311146475699999999999999998389867998317523322301245888
No 3
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=1505.96 Aligned_cols=671 Identities=70% Similarity=1.188 Sum_probs=654.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999998878741322599999997612102875557662699999981999966520135689881559999986
Q 003602 75 ASLAARIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFKTLERS 154 (808)
Q Consensus 75 ~~~A~rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~ 154 (808)
+++||||++++|||++.++|++.+..+++++++++|++.+++++++|++++++.++|++.|+|+||+.|+|+|+++|+++
T Consensus 2 ~~~aarl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~i~~~rd~~f~~~g~~~l~~~ 81 (676)
T 2wgh_A 2 AILAARIAVSNLHKETKKVFSDVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERS 81 (676)
T ss_dssp --CHHHHHHHHHHHTSCSCHHHHHHHHHHCBCTTTCCBCCSSCHHHHHHHHHTHHHHHHTCCGGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 49999999999999977656588999999853201441543077899999999999998858021378888899999964
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 33534993048989999999835215896899999999862926436620014688887666632101248987889999
Q 003602 155 YLLKVQGKVVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGIYDT 234 (808)
Q Consensus 155 Yl~k~~g~~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I~~~ 234 (808)
|++|.+|+++|+||++|||||++++..+++++++||++|++++|+||||||+|+||+++||+||||+++.+||++||+++
T Consensus 82 Yllk~~g~~~E~pq~~~~RVA~~la~~~~~~a~~~y~~ls~~~f~patPtl~naGt~~~qlssCfl~~v~~Dsl~gI~~~ 161 (676)
T 2wgh_A 82 YLLKINGKVAERPQHMLMRVSVGIHKEDIDAAIETYNLLSERWFTHASPTLFNAGTNRPQLSSCFLLSMKDDSIEGIYDT 161 (676)
T ss_dssp TSCEETTEECCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHHTTSSSCCCCCEEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 04466997257999999999998713379999999999981985367467763788888777727626776517899999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 99999999742975211102237997335788865675327999999999975189743563177326986548999994
Q 003602 235 LKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDL 314 (808)
Q Consensus 235 ~~~~a~i~k~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ga~~vyl~~wH~DI~~Fl~~ 314 (808)
++++++++|.|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+|||++||||.|+||++|||||++||++
T Consensus 162 ~~~~a~i~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG~~RrGA~~~~l~~~HpDI~eFl~~ 241 (676)
T 2wgh_A 162 LKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDL 241 (676)
T ss_dssp HHHHHHHHHTTCEEEEECTTSCCTTCEEGGGTEECCCHHHHHHHHHHHHHHSCSTTSSCCCCEEEEECTTBTTHHHHTTT
T ss_pred HHHHHHHHHCCCCCEECCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99999997328975121100368998136889878994369999999999998468844775369867987169999986
Q ss_pred HHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
Q ss_conf 23058421111234200224989899987399678866799998600022279999999987194038982899999999
Q 003602 315 RKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEIL 394 (808)
Q Consensus 315 K~~~g~e~~r~~~l~~sv~i~D~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~ 394 (808)
|+++|++++|++++|+||||||+||+||++|++|+||+|+++|+|+++||++|+++|.++++++..+++|+||+||++|+
T Consensus 242 K~~~g~e~~r~~~l~~sv~i~D~Fm~~v~~d~~w~L~~P~~~~~l~~~yg~~f~~~Y~~~~~~~~~~k~v~Ar~L~~~I~ 321 (676)
T 2wgh_A 242 KKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAII 321 (676)
T ss_dssp TCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEEEBCTTTSTTGGGCCTHHHHHHHHHHHHTTCCSEEEEHHHHHHHHH
T ss_pred HCCCCCHHHHHHHCCHHHCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 13366266656534023213999999998499759978544653666514489999999986796126866999999999
Q ss_pred HHHHHHCCCCEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99896197512520347631797888824420598323347899963122416667013442119887888875445579
Q 003602 395 KSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRG 474 (808)
Q Consensus 395 ~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~s~~~e~~~CnL~sInL~~~v~~~~~~~~~~~~~~~g~~~ 474 (808)
+++|+||+|||+|+|+||++||+++.|+|++||||+||+||+.++|+++|||+||||++|+..
T Consensus 322 ~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~SNpC~EI~~~~~~~e~~~CNL~SiNL~~~v~~----------------- 384 (676)
T 2wgh_A 322 ESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS----------------- 384 (676)
T ss_dssp HHHHHHSCCEEEEHHHHHHTCTTGGGCCCCCCCTTSCCCCCCBTTBCEEECEEEEEGGGGBCT-----------------
T ss_pred HHHHHHCCCEEEECHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHCC-----------------
T ss_conf 999997898588504345348877778078514650312668788645786243319999533-----------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99877798899999999999999998408997799999861049802225049999998299999899999999999999
Q 003602 475 SKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETI 554 (808)
Q Consensus 475 ~~~~~fD~e~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~s~ea~~l~~~i~e~i 554 (808)
++.|||+.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++++++|||.|
T Consensus 385 --~~~~D~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i 462 (676)
T 2wgh_A 385 --EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETI 462 (676)
T ss_dssp --TSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf --578898999999999999999999668873799999987179716619999999997799889999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 99999999999998199999989967668877655578999826479899999732875542002599954010048975
Q 003602 555 YYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNE 634 (808)
Q Consensus 555 ~~~a~~aS~~LAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~t~ 634 (808)
+|+|++||++||+|+|+||.|++|+|++|++++|.|...|+..+||++||++|++||+|||+++|||||||||+|+|+|+
T Consensus 463 ~~~A~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiaPTgTiS~i~g~s~ 542 (676)
T 2wgh_A 463 YYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNE 542 (676)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTTCCCCSSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCC
T ss_conf 99999999999997398866655824316751235406897144299999999985872010242268755553138887
Q ss_pred CCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHCCCHHHHHHHH
Q ss_conf 22235544156771357337747678999998599908886333326995013699986788602000026969999999
Q 003602 635 CFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMA 714 (808)
Q Consensus 635 gieP~~~~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsi~~~~~ip~~~k~~f~tA~ei~~~~~i~~~ 714 (808)
||||+|+++|+|++.+|+|+++|++|+++|+++|+|+++++++|+.++|+++.+|.+|++++++|+|||||+|+++|+|+
T Consensus 543 gIeP~~s~~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~~p~lp~~~~~~f~tA~ei~~~~~i~~~ 622 (676)
T 2wgh_A 543 SIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMA 622 (676)
T ss_dssp TTCCCCCSBC---------CCBCHHHHHHHHHHTC-------------CCCTTCSSSCHHHHHHTCCTTSSCHHHHHHHH
T ss_pred CCCCCCCHHEEEECCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCHHHCCHHHHHHHH
T ss_conf 22705210315762567335237899999998399849999999864993714777997899882788648999999999
Q ss_pred HHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 98377332464004740899966899999999982996389994585322
Q 003602 715 VDRGCYIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764 (808)
Q Consensus 715 a~~Q~~vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (808)
|++|||||||||+|||+++++.++|.++|++||++||||++||||++.-.
T Consensus 623 a~~Q~~iDqsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~~~ 672 (676)
T 2wgh_A 623 AERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672 (676)
T ss_dssp HHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC---
T ss_pred HHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 99677776666437864999999999999999981997799999874234
No 4
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=1.00 E-value=1 Score=1502.12 Aligned_cols=703 Identities=29% Similarity=0.486 Sum_probs=659.0
Q ss_pred CEEEECCCCEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCHHHHHH
Q ss_conf 948802992531386789999999880399987687969999870029999988999999999985233-9998699999
Q 003602 1 MYVVKRDGKQEAVHFDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTT-NHPDYASLAA 79 (808)
Q Consensus 1 ~~V~KrdG~~e~~~~~ki~~~i~~a~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~-~~p~y~~~A~ 79 (808)
|+|+||||++|||+++||+++|+|||+||+ .+|+..|+.++..+++|||||+|||+++|++|+++++ ++|||+++||
T Consensus 5 ~~v~krdG~~e~~~~~ki~~~i~~~~~~l~--~~~~~~~~~~~~~~~~~~~tt~ei~~~~~~~a~~~~~~~~p~~~~~Aa 82 (761)
T 2xap_A 5 LLVTKRDGSTERINLDKIHRVLDWAAEGLH--NVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAA 82 (761)
T ss_dssp CEEECSSSCEEECCHHHHHHHHHHHHTTCS--SCCHHHHHHHHHTTCCTTEEHHHHHHHHHHHHHHTCCSSSTTHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 389967995525789999999999970577--899999999998514699999999999999999855823867799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9999988787413225999999976121028755576626999-999819999665201356898815599999863353
Q 003602 80 RIVVSNLHKNTKKSFSETIKDMYNHYNERSGLKAPLIADDVYD-IIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLK 158 (808)
Q Consensus 80 rl~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k 158 (808)
||++++|||++.++|.. ..+++++. ..+..++++.++++ |+.+++++|++.|+|+||+.|+|+|+++|+++|++|
T Consensus 83 rl~~~~l~k~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~l~~~i~~~rd~~~~~~g~~~l~~rYllk 158 (761)
T 2xap_A 83 RLAIFHLRKKAYGQFEP--PALYDHVV--KMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQ 158 (761)
T ss_dssp HHHHHHHHHHHHSSSSC--CCHHHHHH--HHHHTTSSCTHHHHHSCHHHHHHHHHHCCGGGGGGCCHHHHHHHHHHTSCB
T ss_pred HHHHHHHHHHHHCCCCH--HHHHHHHH--HHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999999997634676--77999999--887312113788864369999999966461114788878999998545874
Q ss_pred C--CCCCCCCHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 4--99304898999999983521589-----6899999999862926436620014688887666632101248987889
Q 003602 159 V--QGKVVERPQHMLMRVAVGIHKDD-----IDSAIKTYHMMSQRWFTHASPTLFNAGTPRAQLSSCFLVCMKDDSIEGI 231 (808)
Q Consensus 159 ~--~g~~~E~pq~~~~rvA~~l~~~~-----~~~~~~~y~~ls~~~~~~atP~l~naGt~~~~lsSCfl~~~~~Ds~~~I 231 (808)
. +|+++|+||++|||||++++..+ .+++++||++|++++|+||||||+|+|++++||+||||+++ +||++||
T Consensus 159 ~~~~g~~~E~pq~~~~RVA~~la~~e~~~~~~~~a~~fy~~ls~~~~~patPtl~naGt~~~qlssCFl~~v-~Dsle~I 237 (761)
T 2xap_A 159 NRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIEC-GDSLDSI 237 (761)
T ss_dssp CTTTCCBCCCHHHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHHTTSEECCHHHHHHTTSSCCCCCCEEEEEC-CSSHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCEEEEECC-CCCHHHH
T ss_conf 499995532899999999999853086101799999999999819867886545417888887620898428-8977899
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH
Q ss_conf 99999999999742975211102237997335788865675327999999999975189743563177326986548999
Q 003602 232 YDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEF 311 (808)
Q Consensus 232 ~~~~~~~a~i~k~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ga~~vyl~~wH~DI~~F 311 (808)
++++++++++++.|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||.|+||++|||||++|
T Consensus 238 ~~~~~~~~~~~s~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG-~RrGA~~vyL~~~HpDI~eF 316 (761)
T 2xap_A 238 NATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGG-VRGGAATLFYPMWHLEVESL 316 (761)
T ss_dssp HHHHHHHHHHHTTTCEEEEECTTSCCTTCC------CCSCHHHHHHHHHHHHTTTSTTS-SSSCEEEEEEETTBTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCHHHHH
T ss_conf 99999999998638925011000078988278988868881779999999999997069-75776247855888049999
Q ss_pred HHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHH---CHHHHHHHHHHHHCCC-EEEEEEHH
Q ss_conf 9942305842111123420022498989998739967886679999860002---2279999999987194-03898289
Q 003602 312 LDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCW---GTEFERLYTKYEKEGK-AKKVVQAQ 387 (808)
Q Consensus 312 l~~K~~~g~e~~r~~~l~~sv~i~D~Fm~rv~~~~~w~Lf~P~~~~~L~~~~---g~eF~~~Y~~~e~~~~-~~~~v~Ar 387 (808)
|++|+++|+++.|++++|+||||||+||+||++|++|+||+|+++|+|++.| |++|+++|.+|++++. .+++|+||
T Consensus 317 l~~K~~~g~e~~r~~~l~~~v~i~D~Fm~~v~~d~~w~Lf~P~~~~~l~~~~~~~~~~f~~~Y~~~~~~~~i~~~~v~Ar 396 (761)
T 2xap_A 317 LVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAV 396 (761)
T ss_dssp HTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHHTCEEEEBCGGGSTTHHHHHHHCHHHHHHHHHHHHHCTTSCCEEEEHH
T ss_pred HHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 99703367504456526640166999999998199759888543410211010015799999999985788136775199
Q ss_pred HHHHHHHHHHHHHCCCCEEEHHHHHHHCCC-CCCCCEEEECCCCCCCCCCCC--------CCCEEEECCCCCHHHHHHHC
Q ss_conf 999999999896197512520347631797-888824420598323347899--------96312241666701344211
Q 003602 388 NLWFEILKSQIETGTPYMLFKDTCNKKSNQ-QNLGTIKSSNLCTEVIQYTSP--------TETAVCNLASIALPRYVREM 458 (808)
Q Consensus 388 ~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~-~~~G~I~~sNlC~EI~~~s~~--------~e~~~CnL~sInL~~~v~~~ 458 (808)
+||++|++++|+||+|||+|+|+||+++|+ ++.|+|++||||+||+|++.| +|+++|||+||||++|+
T Consensus 397 ~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~~g~I~~SNlC~Ei~l~~~p~~~~~~~~ge~~~CNL~SiNL~~~~--- 473 (761)
T 2xap_A 397 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIN--- 473 (761)
T ss_dssp HHHHHHHHHHHHHSCEEEEETTHHHHSSSBCTTTSCBCCCCTTSCCCCBCBCCSSTTCTTCBCEECEEEEEETTTCS---
T ss_pred HHHHHHHHHHHHHCCCEEEECHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEHHHHC---
T ss_conf 99999999999749853872287773597666668077126441234567752000245675133140132299952---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCC
Q ss_conf 98878888754455799987779889999999999999999840899779999986104980222504999999829999
Q 003602 459 GVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPF 538 (808)
Q Consensus 459 ~~~~~~~~~~~~g~~~~~~~~fD~e~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y 538 (808)
||++|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|
T Consensus 474 ----------------------d~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~gi~Y 531 (761)
T 2xap_A 474 ----------------------NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRY 531 (761)
T ss_dssp ----------------------SGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCCEEEEEECHHHHHHHTTCCS
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCC
T ss_conf ----------------------8999999999999999998982367729999999854763667510999999869987
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCHHHHHHHHHHCCC
Q ss_conf 9899999999999999999999999999981999999899676688776555789------9982647989999973287
Q 003602 539 DSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVN------PSDRWDWGGLRDMISKNGV 612 (808)
Q Consensus 539 ~s~ea~~l~~~i~e~i~~~a~~aS~~LAkE~G~~~~f~~S~~~~G~l~~d~~~~~------~~~~~dW~~Lr~~i~~~G~ 612 (808)
+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|++++|.|... ++..+||++||++|++||+
T Consensus 532 ~S~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~~~~~~~~~~~dW~~Lr~~i~~~G~ 611 (761)
T 2xap_A 532 SDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGL 611 (761)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGGGGTCCCCCCSCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999999999868798877784533774332455555530373025529999999998486
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 55420025999540100489752223554415677135733774767899999859990888633332699501369998
Q 003602 613 RNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIP 692 (808)
Q Consensus 613 RNs~l~AiaPT~stS~i~g~t~gieP~~~~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsi~~~~~ip 692 (808)
|||+++|||||||||+|+|+|+||||+|+++|.|+...|.+..++|.+
T Consensus 612 RNs~l~aiAPTgTiS~i~g~s~gIeP~~~~~~~r~~~~G~~~~~~p~~-------------------------------- 659 (761)
T 2xap_A 612 RNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDY-------------------------------- 659 (761)
T ss_dssp SCSCCBCBCCCSHHHHHTTCCCTTCCCSSSEEEECCTTSCEEEECTTH--------------------------------
T ss_pred CCCEEEECCCCCCEEEECCCCCEECCCCCCEEEEECCCCCEEEECCCH--------------------------------
T ss_conf 211145348886544203778722505464246751368422207788--------------------------------
Q ss_pred HHHHHHHHCHHCCC-HHHHHHHHHHHCCCCCCCCCEEEEECC-------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 67886020000269-699999999837733246400474089-------9966899999999982996389994585322
Q 003602 693 EELKAIYKTVWEIK-QKTLVDMAVDRGCYIDHSQSLNIHMDQ-------PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAA 764 (808)
Q Consensus 693 ~~~k~~f~tA~ei~-~~~~i~~~a~~Q~~vDqsiS~tl~~~~-------~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~ 764 (808)
++++++|+|||||+ |+++|+|+|++|||||||||+|||+++ .+.+++..+|++||++|||| +||+|+++++
T Consensus 660 ~~l~~~y~ta~ei~~~~~~i~m~A~~Q~~iDqsiS~tl~~~~~~~~~~~~t~~dl~~~y~~Awk~GlKT-~Yy~rsr~~~ 738 (761)
T 2xap_A 660 EHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYXQNTRDGA 738 (761)
T ss_dssp HHHTTTCCCGGGCSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCEEHHHHHHHHHHHHHTTCCE-ECCEEECCC-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCE-ECCCCCCCHH
T ss_conf 998998768971667899999999976766234264587777433567889999999999999819888-7778772002
Q ss_pred CCCCC
Q ss_conf 22012
Q 003602 765 DAIKF 769 (808)
Q Consensus 765 ~~~~~ 769 (808)
...+-
T Consensus 739 ~~~~~ 743 (761)
T 2xap_A 739 EDAQD 743 (761)
T ss_dssp -----
T ss_pred HHCCC
T ss_conf 21240
No 5
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=1.00 E-value=1 Score=1328.03 Aligned_cols=632 Identities=25% Similarity=0.418 Sum_probs=572.0
Q ss_pred CCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCHHHHH-HHHHHHHHHH
Q ss_conf 339998699999999998--878741322599999997612102875------------5576626999-9998199996
Q 003602 68 TTNHPDYASLAARIVVSN--LHKNTKKSFSETIKDMYNHYNERSGLK------------APLIADDVYD-IIMKNAARLD 132 (808)
Q Consensus 68 ~~~~p~y~~~A~rl~~~~--l~k~~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~-~~~~~~~~l~ 132 (808)
...+|||..+|+||.+.+ +++++.++|+.+...+++|++++++.+ .++|+.++++ |..++++++.
T Consensus 10 ~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~~~~~~y~~~~l~~~~ 89 (714)
T 1peq_A 10 MQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLF 89 (714)
T ss_dssp SCCCCCHHHHHHGGGCCCTTSCCCTHHHHHHHHHHHHHTHHHHBCCCSCHHHHHHHHHHTTSBCHHHHTTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHH
T ss_conf 56898899999878332567864351019999999998652404678888999998871675468989755899999998
Q ss_pred HHHCCCCCCCC-CHHHHHHHHHHHCCCC-CCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCC
Q ss_conf 65201356898-8155999998633534-993-04898999999983521589689999999986292643662001468
Q 003602 133 SEIIYDRDFDY-DYFGFKTLERSYLLKV-QGK-VVERPQHMLMRVAVGIHKDDIDSAIKTYHMMSQRWFTHASPTLFNAG 209 (808)
Q Consensus 133 ~~i~~~rd~~~-~y~g~~~l~~~Yl~k~-~g~-~~E~pq~~~~rvA~~l~~~~~~~~~~~y~~ls~~~~~~atP~l~naG 209 (808)
..+. ++|+.| +|+|+++|+++|++|. +|+ ++|+||+++||||++++..+.+++++||++|++++|+||||||+|+|
T Consensus 90 ~~~~-~~~~~f~~y~g~~~l~~~Y~lk~~~g~~~~E~~~~~~~rvA~~la~~~~~~a~~~y~~ls~~~f~patPtl~NaG 168 (714)
T 1peq_A 90 EHAH-ASGFRFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPTFLNCG 168 (714)
T ss_dssp HHHH-HSCCCCSSHHHHHHHHHHTSCBCTTSSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSEEECHHHHHHTT
T ss_pred HHHH-HCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 5666-327877765899999987065169999884789999999999974578899999999998288666873554077
Q ss_pred CCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 888-7666632101248987889999999999997429752111022379973357888656753279999999999751
Q 003602 210 TPR-AQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQ 288 (808)
Q Consensus 210 t~~-~~lsSCfl~~~~~Ds~~~I~~~~~~~a~i~k~ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~q 288 (808)
++. +||+||||+++ +||++||+++++++++++|.|||||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+|
T Consensus 169 t~~~~qlssCFl~~v-~Dsle~I~~~~~~~a~l~k~gGGvG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~Q 247 (714)
T 1peq_A 169 KQQRGELVSCFLLRI-EDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVIPVMKMLEDAFSYANQ 247 (714)
T ss_dssp BSSCCCSCCCEEECC-CSSHHHHHHHHHHHHHHHTTTCEEEEECTTSCCTTCCBTTBSSCCCCSHHHHHHHHHHHHHC--
T ss_pred CCCCCCCCCEECCCC-CCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 787777552236778-9877789999999999985389706740234678773567788788746899999999999861
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHCHH--
Q ss_conf 897435631773269865489999942305842111123420022498989998739967886679999860002227--
Q 003602 289 GGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTE-- 366 (808)
Q Consensus 289 gG~~R~ga~~vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~i~D~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~e-- 366 (808)
|| +||||.|+||++|||||++||++|+++|++++|++++|+||||||+||+||++|++|+||+|+++ .++||.+
T Consensus 248 gG-~RrGA~~vyL~~~HpDI~eFl~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~Lf~P~~~---~~~~G~~~~ 323 (714)
T 1peq_A 248 LG-ARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDI---QRRYGKPFG 323 (714)
T ss_dssp -----CCEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEEECHHHH---HHHHSSCGG
T ss_pred CC-CCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCC---HHHCCCCCC
T ss_conf 68-66784148836887169999997013651455566511442549999999986997063577532---443286400
Q ss_pred ---HHHHHHHHHHCCC-EEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC--
Q ss_conf ---9999999987194-0389828999999999989619751252034763179788882442059832334789996--
Q 003602 367 ---FERLYTKYEKEGK-AKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTE-- 440 (808)
Q Consensus 367 ---F~~~Y~~~e~~~~-~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~s~~~e-- 440 (808)
|++.|++++.++. .+++|+||+||++|++++|+||+|||+|+|+||++||++ |+|++||||+||+|+++|++
T Consensus 324 ~~~~~~~Y~~~~~~~~i~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~--g~I~~SNlC~EI~~~~~p~~~~ 401 (714)
T 1peq_A 324 DIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRINMSNLCSEILQVNSASRYD 401 (714)
T ss_dssp GSCHHHHHHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCSS--SCCCCCCTTSCCCCCCCCCEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCCCC--CEEEECCCCCCEECCCCCCCCC
T ss_conf 13368999999757871467860999999999999996897598736666349988--7365057652000357754345
Q ss_pred ----------CEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CHHH
Q ss_conf ----------31224166670134421198878888754455799987779889999999999999999840899-7799
Q 003602 441 ----------TAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYY-PVET 509 (808)
Q Consensus 441 ----------~~~CnL~sInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~l~~~v~~avr~LD~vid~~~~-p~~~ 509 (808)
.++|||+||||++|++. ++|+++|+++||+||+|||.+.| |+|+
T Consensus 402 ~~~~~~~~G~~~~CNL~SiNL~~~v~~-------------------------~~l~~~v~~avr~Ld~Vid~~~~~~~p~ 456 (714)
T 1peq_A 402 DNLDYTHIGHDISCNLGSLNIAHVMDS-------------------------PDIGRTVETAIRGLTAVSDMSHIRSVPS 456 (714)
T ss_dssp TTSCEEECCCCEECEEEEEEHHHHHTC-------------------------SCHHHHHHHHHHHHHHHHHTCCCTTCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCH-------------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 554324568867633263338975587-------------------------8899999999999999876423688799
Q ss_pred HHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 9998610498022250499999982999998999999999999999999999999999819-999998996766887765
Q 003602 510 ARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREG-PYETYHGSPVSKGILQPD 588 (808)
Q Consensus 510 ~~~~~~~~R~IGiGv~Glad~L~~~gi~y~s~ea~~l~~~i~e~i~~~a~~aS~~LAkE~G-~~~~f~~S~~~~G~l~~d 588 (808)
++++++++|+||||+|||||+|+++|++|+|+||++|+++|||.|+|+|++||++||+|+| +||.|++|+|++|++ ||
T Consensus 457 ~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~ 535 (714)
T 1peq_A 457 IAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FT 535 (714)
T ss_dssp HHHHHHHHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HH
T ss_pred HHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCH-HH
T ss_conf 99998824870771878999999769987999999999999999999999999999998499875656583423544-55
Q ss_pred CC-------------------CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECC
Q ss_conf 55-------------------78999826479899999732875542002599954010048975222355441567713
Q 003602 589 MW-------------------GVNPSDRWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVL 649 (808)
Q Consensus 589 ~~-------------------~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~t~gieP~~~~~y~r~~~ 649 (808)
.| +..++..+||++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|++.
T Consensus 536 ~~~~~~~~p~~~~v~~l~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s~~~~r~~~ 615 (714)
T 1peq_A 536 QYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEG 615 (714)
T ss_dssp HHHSSCCSCSSHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCS
T ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHCCCCCCCCCCCCCEEEEECC
T ss_conf 31442337430788887664277775254199999999984870301356358875054258887416453422577626
Q ss_pred C-CCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHCCCHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 5-733774767899999859990888633332699501369998678860200002696999999998377332464004
Q 003602 650 S-GEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLN 728 (808)
Q Consensus 650 ~-G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsi~~~~~ip~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t 728 (808)
. |++.+++++ +|++++++|+|||||+|+++|+|+|++|||||||||+|
T Consensus 616 ~~g~~~~~~p~-------------------------------l~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~iDqsiS~t 664 (714)
T 1peq_A 616 KTGRVYYPAPF-------------------------------MTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLT 664 (714)
T ss_dssp TTSCEEEECTT-------------------------------CCTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCC
T ss_pred CCCCEEEECCC-------------------------------CCHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 57707875776-------------------------------43335765086864999999999999767562246635
Q ss_pred EEECC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 74089-99668999999999829963899945853222
Q 003602 729 IHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAAD 765 (808)
Q Consensus 729 l~~~~-~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~ 765 (808)
+|+++ .+.++|.++|++||++|||| +||+|+++.+.
T Consensus 665 l~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~rs~~~~~ 701 (714)
T 1peq_A 665 LFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLAL 701 (714)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECCC--
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCE-EEECCCCCCCC
T ss_conf 88689999999999999999959988-99825643444
No 6
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=1.00 E-value=1 Score=1283.28 Aligned_cols=577 Identities=28% Similarity=0.429 Sum_probs=541.8
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCC-CHHHHHHHHHHHHCCCC---------------HHHHHHHHHHH
Q ss_conf 9665201356898815599999863353-4993048-98999999983521589---------------68999999998
Q 003602 131 LDSEIIYDRDFDYDYFGFKTLERSYLLK-VQGKVVE-RPQHMLMRVAVGIHKDD---------------IDSAIKTYHMM 193 (808)
Q Consensus 131 l~~~i~~~rd~~~~y~g~~~l~~~Yl~k-~~g~~~E-~pq~~~~rvA~~l~~~~---------------~~~~~~~y~~l 193 (808)
+..+|+|.||..|+|+|+++|.+||++| .+|+++| +||++|||||++++..+ .+++++||++|
T Consensus 3 ~~~~~~~~~d~~~s~~a~~~l~~rYllk~~~g~~~E~spq~~~~RVA~~la~~e~~~~~~~~~~~~~~~~~~~~~fy~~l 82 (644)
T 3o0q_A 3 LSDLISRWIDVEPSKNAQIILRDRYFMKDLDGNYLETKWEDVARRVARVVATAELLNPSYKKNEKLDRIKEWEDIFFRVL 82 (644)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTSCBCTTSCBSCCSHHHHHHHHHHHHHGGGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45543304778979999999999508328999975489999999999999864244442000011013799999999999
Q ss_pred HCCCEECCCCCCCCCCC---------C------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 62926436620014688---------8------------------87666632101248987889999999999997429
Q 003602 194 SQRWFTHASPTLFNAGT---------P------------------RAQLSSCFLVCMKDDSIEGIYDTLKECAIISKSAG 246 (808)
Q Consensus 194 s~~~~~~atP~l~naGt---------~------------------~~~lsSCfl~~~~~Ds~~~I~~~~~~~a~i~k~gg 246 (808)
++++|+||||||+|+|+ + ++|||||||+++ +||++||+++++++++++|+||
T Consensus 83 s~~~f~patPtl~NaGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qlssCFl~~v-~Dsl~~I~~~~~~~a~i~k~GG 161 (644)
T 3o0q_A 83 KARLFIPNSPTLFNAGLGVKHDLLWKPIDQMTLEDYEEIYRSRNHLHMLSACFVVPV-GDSIEEIFEAVKEYALITKVGG 161 (644)
T ss_dssp HTTSEEECHHHHHHTTTTSCHHHHSSCGGGCCHHHHHHHHHHCCTTCCCCCEEECCC-CSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCEECCCHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 809873488676458887643434577021022100000124446777613594388-9888999999999999986089
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH-CCCCCCCC
Q ss_conf 75211102237997335788865675327999999999975189743563177326986548999994230-58421111
Q 003602 247 GIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKN-HGKEEHRA 325 (808)
Q Consensus 247 GvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ga~~vyl~~wH~DI~~Fl~~K~~-~g~e~~r~ 325 (808)
|||+|+|+|||+|++|+|++|+|||||||||+||+++.+|+||| +||||.|+||++|||||++||++|++ .|+ .|.
T Consensus 162 GiG~~~s~iR~~Gs~I~g~~g~ssG~vpfmk~~d~~~~~v~QgG-~RrGA~~~yL~~~HpDI~eFl~~K~~n~g~--~~~ 238 (644)
T 3o0q_A 162 GVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVVKQGS-RRRGALMGILNINHPDIEEFIDAKKENTGE--AVL 238 (644)
T ss_dssp EEEEECTTSCCTTCEETTTTEECCCHHHHHHHHHHHHTTCEETT-TEECCEEEEEETTSTTHHHHHTCC---------CC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCE
T ss_conf 73120034489988024568846885109999999999997079-655505799648984799999983436675--434
Q ss_pred CCCCEECCCC---HHHHHHHHCCCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCC
Q ss_conf 2342002249---8989998739967886679999860002227999999998719403898289999999999896197
Q 003602 326 RDLFYALWVP---DLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEGKAKKVVQAQNLWFEILKSQIETGT 402 (808)
Q Consensus 326 ~~l~~sv~i~---D~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~~~~~~v~Ar~l~~~I~~~~~etG~ 402 (808)
+++|++|+|| |+||+||++|++|+||+|. |..+++|+||+||++|++++|+||+
T Consensus 239 ~~~n~sv~i~~~pD~Fm~~v~~d~~w~L~~P~-----------------------g~~~~~v~Ar~L~~~I~~~~~etG~ 295 (644)
T 3o0q_A 239 NFFNLSVGFPMDKKEILKLYEEDGELELSHPR-----------------------STIRKKVKIRELFRKIATNAWKSGD 295 (644)
T ss_dssp TTEEEEEECCSCHHHHHHHHHTTCEEEECCTT-----------------------CCCCEEEEHHHHHHHHHHHHHHHSC
T ss_pred EECCEEEEECCCHHHHHHHHHCCCCEEEECCC-----------------------CCEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 63213577278889999999749986968899-----------------------9653226199999999999999789
Q ss_pred CCEEEHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 51252034763179788882442059832334789996312241666701344211988788887544557999877798
Q 003602 403 PYMLFKDTCNKKSNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALPRYVREMGVPMESHPSKLVGSRGSKNRYFDF 482 (808)
Q Consensus 403 P~i~f~D~~Nr~~~~~~~G~I~~sNlC~EI~~~s~~~e~~~CnL~sInL~~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~ 482 (808)
|||+|+|+||++||+++.|+|++||||+||++++ .++|||+||||++|+.+ +.|||
T Consensus 296 Pgi~f~D~~N~~~~~~~~g~I~~SNlC~Ei~l~~----~~~CNLgSiNL~~~v~~--------------------~~fD~ 351 (644)
T 3o0q_A 296 PGLAFLGEMNKYYPLYPHRKINSTNPCGEIGLSD----YEACNLGSIDVAKFYNN--------------------GFVDL 351 (644)
T ss_dssp CEEECHHHHHHTCTTTTTSCEEEECTTSCCEEET----TCEEEEEEEEGGGGEET--------------------TEECH
T ss_pred CEEEEHHHHHHCCCCCCCCCEEECCCCCCCCCCC----CCCEEHHHHHHHHHHCC--------------------CCCCH
T ss_conf 8499826677569875677266336766312589----98567099889998545--------------------88799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999840899779999986104980222504999999829999989999999999999999999999
Q 003602 483 EKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTS 562 (808)
Q Consensus 483 e~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~~~gi~y~s~ea~~l~~~i~e~i~~~a~~aS 562 (808)
++|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||||+|+++|++|+|+||++++++|||.|+|+|++||
T Consensus 352 ~~l~~~v~~avr~LD~VId~~~~P~~~~~~~~~~~R~IGLGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS 431 (644)
T 3o0q_A 352 EALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTS 431 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCEEEEEECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999961447679999998613765506377999999769887999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 9999981999999899676--688776555789998264798999997--328755420025999540100489752223
Q 003602 563 SEIAAREGPYETYHGSPVS--KGILQPDMWGVNPSDRWDWGGLRDMIS--KNGVRNSLLVAPMPTASTSQILGNNECFEP 638 (808)
Q Consensus 563 ~~LAkE~G~~~~f~~S~~~--~G~l~~d~~~~~~~~~~dW~~Lr~~i~--~~G~RNs~l~AiaPT~stS~i~g~t~gieP 638 (808)
++||+|+|+||.|++|+|+ +|+++++.|. ..+|++||++|+ +||+|||+++|||||||||+|+|+|+||||
T Consensus 432 ~eLA~e~G~f~~f~~s~~~~~~g~~~~~~~~-----~~~W~~Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP 506 (644)
T 3o0q_A 432 YELGKEKGNFPLLEISRYRTEDNFVPFAMGM-----SNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEP 506 (644)
T ss_dssp HHHHHHHCCCTTGGGSHHHHSSSCCSSCCCS-----CTTHHHHHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCCCCCCC-----CCCHHHHHHHHHHCCCCCEEHHEECCCCCCCHHHHCCCCCCCCC
T ss_conf 9999986899775668001148841136443-----11389999998751147300000214888660221388776460
Q ss_pred CCCCEEEEECC--CCC---EEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHCCCHHHHHHH
Q ss_conf 55441567713--573---3774767899999859990888633332699501369998678860200002696999999
Q 003602 639 YTSNIYSRRVL--SGE---FVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDM 713 (808)
Q Consensus 639 ~~~~~y~r~~~--~G~---~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gsi~~~~~ip~~~k~~f~tA~ei~~~~~i~~ 713 (808)
+|+++|.|++. +|+ |.++|++|+++|+++ |++++++.|. .+|+++++|.+|++++++|+|||||+|+++|+|
T Consensus 507 ~~s~~y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~~~i~-~~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m 583 (644)
T 3o0q_A 507 NFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIEKELI-EKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLM 583 (644)
T ss_dssp CSCSEEEEC---------CEEEECHHHHHHSCHH--HHHHHHHHHH-HHSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCEEEECHHHHHHHHHH--CCHHHHHHHH-HCCCCCCCCCCCHHHHHHCCCHHHCCHHHHHHH
T ss_conf 5232588972036787221266678999999986--4499999998-569834666689778867051975999999999
Q ss_pred HHHHCCCCCCCCCEEEEECC-CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
Q ss_conf 99837733246400474089-996689999999998299638999458532222
Q 003602 714 AVDRGCYIDHSQSLNIHMDQ-PNFGKLTSLHFHAWLRGLKTGMYYLRSRAAADA 766 (808)
Q Consensus 714 ~a~~Q~~vDqsiS~tl~~~~-~~~~~i~~~~~~Awk~GlKt~~YY~r~~~~~~~ 766 (808)
+|++|||||||||+|||+++ ++.++|.++|++||+.||||++||....+..+.
T Consensus 584 ~A~~Q~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~t~YR~gs~~~qv 637 (644)
T 3o0q_A 584 QDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQV 637 (644)
T ss_dssp HHHHHTTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEEEEEETTCC----
T ss_pred HHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 999776240306552656899999999999999999689889998899864353
No 7
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=1.00 E-value=1 Score=917.56 Aligned_cols=511 Identities=18% Similarity=0.226 Sum_probs=428.1
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHCCCC---------------HHHHHHHH
Q ss_conf 199996652013568988155999998633534-99304898999999983521589---------------68999999
Q 003602 127 NAARLDSEIIYDRDFDYDYFGFKTLERSYLLKV-QGKVVERPQHMLMRVAVGIHKDD---------------IDSAIKTY 190 (808)
Q Consensus 127 ~~~~l~~~i~~~rd~~~~y~g~~~l~~~Yl~k~-~g~~~E~pq~~~~rvA~~l~~~~---------------~~~~~~~y 190 (808)
.+++++..|.+.+|. +|..+++++|++|. +|++.|+||+++||||++++... .+++++||
T Consensus 11 f~~~~~~~~~p~~~~----~g~~~~~r~Y~~~~~~g~~~E~~~e~~~RVa~g~~~~~~~~~~~~~~~~~~~~~~~a~~~y 86 (739)
T 1l1l_A 11 FIDRVKASVKPHWGK----LGWVTYKRTYARWLPEKGRSENWDETVKRVVEGNINLDPRLQDSPSLELKQSLTEEAERLY 86 (739)
T ss_dssp HHHHHHHHCCCCCCT----THHHHHHTTTCCEETTTTEECCHHHHHHHHHHHHHTTCGGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCH----HHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999840767999676----5799998505047799996358999999999999864022035532121024699999999
Q ss_pred HHHHCCCEECCCCCCCCCCCCC----C-CCCCCCCCCCC-----------------------------------------
Q ss_conf 9986292643662001468888----7-66663210124-----------------------------------------
Q 003602 191 HMMSQRWFTHASPTLFNAGTPR----A-QLSSCFLVCMK----------------------------------------- 224 (808)
Q Consensus 191 ~~ls~~~~~~atP~l~naGt~~----~-~lsSCfl~~~~----------------------------------------- 224 (808)
++|++++|+||||||+|+||+. + ||+|||++++.
T Consensus 87 ~~m~~~~~~pa~ptL~naGt~~~~~~~~~l~sCf~~~v~~~~~~Ds~~~~~~l~~~~~~~~~~f~~i~~~~~~GgGvG~~ 166 (739)
T 1l1l_A 87 KLIYGLGATPSGRNLWISGTDYQRRTGDSLNNCWFVAIRPQKYGDSKIVPSYLGKQEKAVSMPFSFLFDELMKGGGVGFS 166 (739)
T ss_dssp HHHHTTSEEECHHHHHHTTSHHHHTSTTTTCCEEEEECSCEECCSCSCCCTTSCSSCEETTHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCEECCCHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf 99983973246827762688765567872110387202654455421122222211123223489999999608877622
Q ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHHHHHH------
Q ss_conf ------------------------------------------------------89878899999999999974------
Q 003602 225 ------------------------------------------------------DDSIEGIYDTLKECAIISKS------ 244 (808)
Q Consensus 225 ------------------------------------------------------~Ds~~~I~~~~~~~a~i~k~------ 244 (808)
+||++||++++. ++++++
T Consensus 167 ~~~~~i~~lp~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~DS~eGi~~~~~--ali~~~~~~~~~ 244 (739)
T 1l1l_A 167 VARSNISQIPRVDFAIDLQLVVDETSESYDASVKVGAVGKNELVQDADSIYYRLPDTREGWVLANA--LLIDLHFAQTNP 244 (739)
T ss_dssp CCHHHHTTSCCCCCCCEEEEECCTTSTTHHHHHHTTCBCTTTCCCCTTCEEEECCSSHHHHHHHHH--HHHHTTSGGGCT
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEEECCCCHHHHHHHHH--HHHHHHHCCCCC
T ss_conf 152200017864444320354135542211011135556233024666304545886557999999--999974124555
Q ss_pred --CCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH------------------------HHHHHHCCCCCCCCEE
Q ss_conf --29752111022379973357888656753279999999------------------------9997518974356317
Q 003602 245 --AGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDT------------------------ARYVDQGGGKRKGAFA 298 (808)
Q Consensus 245 --ggGvG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~------------------------~~~v~qgG~~R~ga~~ 298 (808)
+||||+|+|+|||+|++|+|++|+|||||||||+|+++ +.+|+||| +||||.|
T Consensus 245 ~~~gGiG~~~S~IRp~Gs~Ikg~~G~ssG~vpf~k~~~~~~~i~~~~~g~~l~~~d~~di~~~i~~~V~QGG-~RrGA~m 323 (739)
T 1l1l_A 245 DRKQKLILDLSDIRPYGAEIHGFGGTASGPMPLISMLLDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGN-VRRSAEL 323 (739)
T ss_dssp TCCCEEEEECTTSCCTTCBCTTSSSBCCCSHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHTTC-----CEE
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEE
T ss_conf 678835874243588988257889858881779999999998764300333443002235677778886079-6566337
Q ss_pred EECCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHCHHHHHHHHHHHHCC
Q ss_conf 73269865489999942305842111123420022498989998739967886679999860002227999999998719
Q 003602 299 VYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGLWSLFCPNEAPGLADCWGTEFERLYTKYEKEG 378 (808)
Q Consensus 299 vyl~~wH~DI~~Fl~~K~~~g~e~~r~~~l~~sv~i~D~Fm~rv~~~~~w~Lf~P~~~~~L~~~~g~eF~~~Y~~~e~~~ 378 (808)
+|| ||||++||++|++.|+.+..-+.+|+||+|||+||+
T Consensus 324 ~~l---~pDi~eFi~~K~~~g~~~~~~~~~n~Sv~v~D~Fm~-------------------------------------- 362 (739)
T 1l1l_A 324 ALG---SNDDQDFISMKQDQEKLMHHRWASNNSVAVDSAFSG-------------------------------------- 362 (739)
T ss_dssp EEE---ETTCHHHHHGGGCHHHHHHTGGGEEEEEEECTTCCC--------------------------------------
T ss_pred EEE---CCCHHHHHHHCCCCCHHHCCCCCCCCEEEECHHHHH--------------------------------------
T ss_conf 997---836899998572201111221125733564789999--------------------------------------
Q ss_pred CEEEEEEHHHHHHHHHHHHHHHCCCCEEEHHHHHHH------CCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCHH
Q ss_conf 403898289999999999896197512520347631------79788882442059832334789996312241666701
Q 003602 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKK------SNQQNLGTIKSSNLCTEVIQYTSPTETAVCNLASIALP 452 (808)
Q Consensus 379 ~~~~~v~Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~------~~~~~~G~I~~sNlC~EI~~~s~~~e~~~CnL~sInL~ 452 (808)
|.+|++++|+||+||++|+|+||++ +|+++.|+|++||||+||+|++ .++|||+|||
T Consensus 363 -----------~~~I~~~~~etGePgi~f~D~~N~~~~~~~~~~~~~~g~I~~SNpC~EI~l~~----~~~CNL~Sin-- 425 (739)
T 1l1l_A 363 -----------YQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLAN----GEPCNLFEVF-- 425 (739)
T ss_dssp -----------HHHHHHHHHHHSCCEEEEHHHHHHCSSGGGCCCTTTTTTEEEECTTCCSEEET----TCBCCEEEEC--
T ss_pred -----------HHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCCCCCCCEEECCCCEEEECCC----CCCCCHHHHH--
T ss_conf -----------99999999870898067225443125433457755576178548660241146----7733505443--
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEECCHHHHHHH
Q ss_conf 34421198878888754455799987779889999999999999999840899779999986104980222504999999
Q 003602 453 RYVREMGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532 (808)
Q Consensus 453 ~~v~~~~~~~~~~~~~~~g~~~~~~~~fD~e~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~IGiGv~Glad~L~ 532 (808)
.|+.. .|||+ |+++++++||+||+| |++.||+|+++++++++|+||||+|||||+|+
T Consensus 426 ~~v~~---------------------~~d~~-l~~~v~~avr~LdnV-d~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~ 482 (739)
T 1l1l_A 426 PLIAE---------------------EQGWD-LQEVFALAARYAKRV-TFSPYDWEISREIIQKNRRIGISMSGIQDWLL 482 (739)
T ss_dssp HHHHH---------------------HTTCC-HHHHHHHHHHHHHHH-TTSCCSCHHHHHHHHHHCCCEEEECSHHHHHH
T ss_pred HHCCC---------------------CCCHH-HHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 11034---------------------43277-999999999997762-53047709999999857932325665999999
Q ss_pred -HCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -829999----98999999999999999999999999999819999998996--76688776555789998264798999
Q 003602 533 -LLGMPF----DSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSP--VSKGILQPDMWGVNPSDRWDWGGLRD 605 (808)
Q Consensus 533 -~~gi~y----~s~ea~~l~~~i~e~i~~~a~~aS~~LAkE~G~~~~f~~S~--~~~G~l~~d~~~~~~~~~~dW~~Lr~ 605 (808)
++|++| +|.+|. +| +|+|++|.|+++. +.++++.. ....+|+.
T Consensus 483 ~~~gi~Y~~~y~s~~a~-------------------el-~e~g~~~~~~~~~~~~~~~~~~~-------~~~~~w~~--- 532 (739)
T 1l1l_A 483 TRLGNRVVTGFKDDFDP-------------------ET-HEAIKVPVYDKRAIKMVDQLYKA-------VVKADQDY--- 532 (739)
T ss_dssp HHHSSCSEEEEEEEECT-------------------TT-CCEEEEEEECHHHHHHHHHHHHH-------HHHHHHHH---
T ss_pred HHHCCCCCCCCCCHHHH-------------------HH-HHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHHH---
T ss_conf 98098732000478889-------------------97-65347654588899999999998-------89999998---
Q ss_pred HHHHCCCCCC-CCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHHHHHCCCCC
Q ss_conf 9973287554-200259995401004897522235544156771357337747678999998599908886333326995
Q 003602 606 MISKNGVRNS-LLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKNKIIYDDGS 684 (808)
Q Consensus 606 ~i~~~G~RNs-~l~AiaPT~stS~i~g~t~gieP~~~~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~Gs 684 (808)
++++|+||+ ++||||||||+|+|+|+|+||||+|+++|.|++ +|..+|++ +++|+++|+|.++ .++.++|+
T Consensus 533 -~~~~G~rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~---~~~~~n~~-~~~l~~~g~~~~~---~i~~~~g~ 604 (739)
T 1l1l_A 533 -SKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI---RFQDSDPL-LPALKACGYRTEA---DIYTENTT 604 (739)
T ss_dssp -HHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE---EEETTCTH-HHHHHHTTCEEEE---CSSSTTEE
T ss_pred -HHHHCCCCHHHEEEECCCCCHHHHCCCCCCCCCCCEEEEEEEE---EECCCCHH-HHHHHHCCCCCHH---HHHHCCCC
T ss_conf -9971877731257878983077753888732523021578986---52036658-9999973999367---77625885
Q ss_pred CCCCCC-CCHHHHHHHHCHHCCCHHHHHHHHHHHCC-CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 013699-98678860200002696999999998377-3324640047408999668999999999829963899945853
Q 003602 685 VQKIPQ-IPEELKAIYKTVWEIKQKTLVDMAVDRGC-YIDHSQSLNIHMDQPNFGKLTSLHFHAWLRGLKTGMYYLRSRA 762 (808)
Q Consensus 685 i~~~~~-ip~~~k~~f~tA~ei~~~~~i~~~a~~Q~-~vDqsiS~tl~~~~~~~~~i~~~~~~Awk~GlKt~~YY~r~~~ 762 (808)
++.+|. .|++++.+|+|||||+|+++|+|+|++|| |||||||+|||++++..++|.++ ++||+.|||| +||+|+.+
T Consensus 605 v~~ip~~~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~Ti~~~~~~~~~l~~l-~~awk~GlK~-~yylR~~~ 682 (739)
T 1l1l_A 605 CVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVESL-LRQYRFITKS-TSLLPYFG 682 (739)
T ss_dssp EEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHHH-HHHTTTTCSE-EEEEECCC
T ss_pred EEECCCCCCHHHHHHCCCHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHCCCE-EEEECCCC
T ss_conf 452565572446655265975899999999999663662354401688678669999999-9999837768-99966887
Q ss_pred CCC
Q ss_conf 222
Q 003602 763 AAD 765 (808)
Q Consensus 763 ~~~ 765 (808)
++-
T Consensus 683 ~t~ 685 (739)
T 1l1l_A 683 GSL 685 (739)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 530
No 8
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=1.00 E-value=1 Score=68.81 Aligned_cols=68 Identities=4% Similarity=-0.105 Sum_probs=62.5
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 521110223799733578886567532799999999997518974356317732698654899999423
Q 003602 248 IGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRK 316 (808)
Q Consensus 248 vG~~~s~iR~~Gs~I~g~~g~ssG~vp~lk~~~~~~~~v~qgG~~R~ga~~vyl~~wH~DI~~Fl~~K~ 316 (808)
+|.++|.|||+|+.+.++.+.++|+++|+++++.+...+.|+| .|+|+.++.+..+|||+.+|+..|.
T Consensus 1 C~~~~s~i~~~~~~~~~~~~i~~g~~~~~~i~~~v~~~i~~~g-~~~~~~~~~V~s~d~d~~k~i~~kv 68 (454)
T 1dq3_A 1 CIDGKAKIIFENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWG-IDVSNVPIYVKSFDPESKRVVKGKV 68 (454)
T ss_dssp CEETTCEEEEESSSCEEEEEHHHHHHHHGGGCEEEETTTTEEE-EECTTSCCEEEEEETTTTEEEEEEE
T ss_pred CCCCCCEEEEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHCC-CEECCCCEEEEEECCCCCEEEEEEE
T ss_conf 9988767999089705024303452313546667777787429-3726876799997077787999675
No 9
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=1.00 E-value=1 Score=27.63 Aligned_cols=251 Identities=13% Similarity=0.110 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEHHHHHHHCC-C---CCCC-CEE---EECCCCCCCCCCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 8999999999989619751252034763179-7---8888-244---205983233478999631224166670134421
Q 003602 386 AQNLWFEILKSQIETGTPYMLFKDTCNKKSN-Q---QNLG-TIK---SSNLCTEVIQYTSPTETAVCNLASIALPRYVRE 457 (808)
Q Consensus 386 Ar~l~~~I~~~~~etG~P~i~f~D~~Nr~~~-~---~~~G-~I~---~sNlC~EI~~~s~~~e~~~CnL~sInL~~~v~~ 457 (808)
-.+|++..+++.....-|..++.|..-...+ . ...| +-. ..|..++-... -.++....+|||++.--.
T Consensus 250 n~dl~~~a~~~~ak~~fpn~~~~d~~~~~~g~~~~~~~MgCR~~l~~~~~~~g~~~~~----g~Gn~gvvTINLpRia~~ 325 (605)
T 1h7b_A 250 NYDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEILD----GRNNLGVVTLNLPRIALD 325 (605)
T ss_dssp THHHHHHHHHHHHHHSCCEEEEHHHHHHHHCCSSCCCCBTTTBCCCCCBCTTSCBCCT----TCBEEEEEEEEHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCHHCCHHHHHCCCCCCCC----CCCEEEEEEEEHHHHHHH
T ss_conf 3899999999867733675231033212488644112102211020344224786762----544121078437889977
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC------CCH--------------HHHHHHHHCC
Q ss_conf 19887888875445579998777988999999999999999984089------977--------------9999986104
Q 003602 458 MGVPMESHPSKLVGSRGSKNRYFDFEKLAEVTGIVTENLNKIIDVNY------YPV--------------ETARRSNLRH 517 (808)
Q Consensus 458 ~~~~~~~~~~~~~g~~~~~~~~fD~e~l~~~v~~avr~LD~vid~~~------~p~--------------~~~~~~~~~~ 517 (808)
.+ ..+ ..+...| |+.|.+.+.++.+.|..=.+.-. .|. +++...-+..
T Consensus 326 ~~----------~~a-~gd~~~F-~~~Ld~~l~l~~~~L~~r~~~l~~~~~~~~p~L~~~G~~~~~l~~~d~i~~~~~~~ 393 (605)
T 1h7b_A 326 SY----------IGT-QFNEQKF-VELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNG 393 (605)
T ss_dssp TE----------ETT-EECHHHH-HHHHHHHHHHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBSHHHHTTT
T ss_pred HC----------CCC-CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHCCC
T ss_conf 41----------011-6879999-99999999999999999999998741047833431740103568764078886168
Q ss_pred C-CCEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9-802225049999998299999899999999999999999999999999981999999899676688776555789998
Q 003602 518 R-PIGIGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALRTSSEIAAREGPYETYHGSPVSKGILQPDMWGVNPSD 596 (808)
Q Consensus 518 R-~IGiGv~Glad~L~~~gi~y~s~ea~~l~~~i~e~i~~~a~~aS~~LAkE~G~~~~f~~S~~~~G~l~~d~~~~~~~~ 596 (808)
| .+.||+.||+.++. +. |.+|+.+|.++|...+.+.+ +|.|--=..+.+ |..
T Consensus 394 ~~t~tiG~iGL~E~~~-l~-------a~~f~~~Il~~m~~~~~~~~----~e~g~~~~l~aT---------------PAE 446 (605)
T 1h7b_A 394 RSSVSLGYIGIHELNI-LV-------GRDIGREILTKMNAHLKQWT----ERTGFAFSLYST---------------PAE 446 (605)
T ss_dssp TSEEEEEEECHHHHHH-HH-------TSCCHHHHHHHHHHHHHHHH----HHHCCEEEEECC---------------CCT
T ss_pred CCCEEEEHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHH----HHHCCCEEEEEC---------------CCC
T ss_conf 8405542778999999-99-------99999999999999999999----987980267855---------------445
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCCCCCHHHHH
Q ss_conf 26479899999732875542002599954010048975222355441567713573377476789999985999088863
Q 003602 597 RWDWGGLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPIIKN 676 (808)
Q Consensus 597 ~~dW~~Lr~~i~~~G~RNs~l~AiaPT~stS~i~g~t~gieP~~~~~y~r~~~~G~~~~vn~~l~~~l~~~g~~~~~~~~ 676 (808)
-.--.-.+.+-+++|. |.|+|. .|.|.|-
T Consensus 447 s~~~Rfa~~D~k~fG~----------------i~g~td--~~YYTNS--------------------------------- 475 (605)
T 1h7b_A 447 NLCYRFCKLDTEKYGS----------------VKDVTD--KGWYTNS--------------------------------- 475 (605)
T ss_dssp THHHHHHHHHHHHHCC----------------CTTTTS--SSSCCCT---------------------------------
T ss_pred CHHHHHHHHHHHHCCC----------------CCCCCC--CCCCCCC---------------------------------
T ss_conf 3889999999997598----------------679888--8877799---------------------------------
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHCHHCCCHHHHHHHHHHHCCCCCCCCCEEEEECCC--CHHHHHHHHHHHHHCCC
Q ss_conf 3332699501369998678860200002696999999998377332464004740899--96689999999998299
Q 003602 677 KIIYDDGSVQKIPQIPEELKAIYKTVWEIKQKTLVDMAVDRGCYIDHSQSLNIHMDQP--NFGKLTSLHFHAWLRGL 751 (808)
Q Consensus 677 ~i~~~~Gsi~~~~~ip~~~k~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~--~~~~i~~~~~~Awk~Gl 751 (808)
.+ +| ...++++-+.|+..+..|++..-+...-+++++. +.+.+.++..++.+ |+
T Consensus 476 ---------~h---ip--------V~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~~~~n~~a~~~lv~~~~~-~i 531 (605)
T 1h7b_A 476 ---------FH---VS--------VEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ-HL 531 (605)
T ss_dssp ---------TC---CC--------TTSCCCHHHHHHHHGGGGGTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH-HC
T ss_pred ---------EE---EC--------CCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH-CC
T ss_conf ---------87---61--------79999989999842532440387159999738987999999999999984-89
No 10
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=15.56 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 6789999999880399987687969999870029999988999999999985233999869999999999
Q 003602 15 FDKITARLKKLSYGLSIEHCDPVLVSQKVCTGVYKGVTTSQLDELAAETAAAMTTNHPDYASLAARIVVS 84 (808)
Q Consensus 15 ~~ki~~~i~~a~~~l~~~~v~~~~i~~~~~~~~~~~itt~ei~~~~~~~a~~~~~~~p~y~~~A~rl~~~ 84 (808)
..+++..+++.....+ +.+.+..++...+..++++.+.-..+|+.--+++...|.|..+.|+|...
T Consensus 20 ~r~v~~iLNkLT~~p~----~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~ 85 (234)
T 3rk6_A 20 SEYVQDFLNHLTEQPG----SFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNY 85 (234)
T ss_dssp HHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999997468865----18999999999984379989999999999999998681328999999999
Done!