Query 003603
Match_columns 808
No_of_seqs 222 out of 767
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 18:10:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003603.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1652-1655//hhsearch_pdb/003603hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 1.0 1 1 26.1 13.3 60 403-470 299-359 (444)
2 4djk_A Probable glutamate/gamm 1.0 1 1 24.6 17.8 56 303-358 201-258 (511)
3 3l1l_A Arginine/agmatine antip 1.0 1 1 21.9 13.9 33 306-338 194-228 (445)
4 3hbe_X Class IV chitinase CHIA 1.0 1 1 19.8 -0.2 49 326-378 95-144 (204)
5 2bm3_A Type 2 cohesin, scaffol 1.0 1 1 19.5 0.7 11 624-634 35-45 (166)
6 3cql_A Endochitinase; glycosyl 1.0 1 1 19.3 -0.2 45 326-378 109-158 (243)
7 2cjl_A Chitinase G, secreted c 1.0 1 1 18.9 -0.8 45 326-378 89-138 (204)
8 2dkv_A Chitinase; whole struct 1.0 1 1 18.3 -0.8 34 326-367 165-203 (309)
9 2z37_A Chitinase; family 19, c 1.0 1 1 18.2 -0.8 38 326-367 110-148 (244)
10 3w3e_A Cotyledoneous yieldin-l 1.0 1 1 18.2 -0.8 43 328-378 110-157 (242)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=26.06 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=27.0
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCEEEHHHHHHHH-HHHHEEEEEECCHHHHHHHHHCCHHHHHHHHH
Q ss_conf 999998099862269834885578133105589999-98530368817802466232010044799999
Q 003603 403 IKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLM-IMCVVVVSIFQSTTDIANAYGIAEVGVMLVSS 470 (808)
Q Consensus 403 i~Qai~Lg~fPr~kIvHTS~~~~GQIYIP~VNwlLm-i~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT 470 (808)
....-+-|.+|+.- -++++ ++ |...-++. +.+++.. .+-+-+.+.+.+.++......+..
T Consensus 299 l~a~a~dg~lP~~f-~~~~~--~~----P~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 359 (444)
T 3gia_A 299 AYSLAKDGELPEFF-ERKVW--FK----STEGLYITSALGVLFA-LLFNMEGVASITSAVFMVIYLFVI 359 (444)
T ss_dssp HHHHHHHSSCCSSC-CTTSC--CS----CTHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-HCCCC--CC----CCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998779977888-47888--99----8279999999999999-985899999999999999999999
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=24.62 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3111110126786510245540369887--4112235677687889865010145740
Q 003603 303 KDAWSALGGCVLCITGAEAMFADLGHFS--VKAIQIAFTLVVFPCLLLAYMGQAAYLM 358 (808)
Q Consensus 303 ~~~~~~LG~VvLciTG~EALyADlGHFg--~~~Iqiaw~~~V~P~LlL~Y~GQaA~Ll 358 (808)
...|..+..++.+.+|-|+.-.--+... +|.+..+-..-+.-+.++-.+..-++..
T Consensus 201 ~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~ 258 (511)
T 4djk_A 201 VGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAM 258 (511)
T ss_dssp TTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 1399999999999932988888898642865430699999999999999999999970
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=21.91 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHH
Q ss_conf 1110126786510245540369887--41122356
Q 003603 306 WSALGGCVLCITGAEAMFADLGHFS--VKAIQIAF 338 (808)
Q Consensus 306 ~~~LG~VvLciTG~EALyADlGHFg--~~~Iqiaw 338 (808)
+..+..++.+.+|-|+.-.=-+... +|.+..+-
T Consensus 194 ~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~ 228 (445)
T 3l1l_A 194 QSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_dssp HHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999999749999998998508544330999
No 4
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=1.00 E-value=1 Score=19.75 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=26.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 6988741122356776878898650101457401987645-7421026575228
Q 003603 326 LGHFSVKAIQIAFTLVVFPCLLLAYMGQAAYLMKYPDSAN-RIFYDSVPDSLFW 378 (808)
Q Consensus 326 lGHFg~~~Iqiaw~~~V~P~LlL~Y~GQaA~Ll~~p~~~~-n~Fy~svP~~~~w 378 (808)
-.++||.+||++|-.==-++ =.++|+ =|+.||+.+. ||-+.......||
T Consensus 95 ~~Y~GRG~IQLTg~~NY~~~--g~~lg~--Dll~nPdlva~dp~~a~~sA~wfW 144 (204)
T 3hbe_X 95 KSYHGRGPLQLSWNYNYGAA--GKSIGF--DGLNNPEKVGQDSTISFKTAVWFW 144 (204)
T ss_dssp CCCCCBTTTTBCSHHHHHHH--HHHHTS--CTTTCGGGGGTCHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCCHHHHHHH--HHHHCC--CCCCCHHHHHHCHHHHHHHHHHHH
T ss_conf 85647885343628899999--999588--613598998548799998787654
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=1.00 E-value=1 Score=19.54 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=4.8
Q ss_pred CCCEEEEEEEE
Q ss_conf 88789999987
Q 003603 624 DYHMFRCVTRY 634 (808)
Q Consensus 624 ~~~~~r~v~ry 634 (808)
++.=|++-+.|
T Consensus 35 nfAGYQvNIKY 45 (166)
T 2bm3_A 35 NFAGFQVNIVY 45 (166)
T ss_dssp TEEEEEEEEEC
T ss_pred CCCCEEEEEEE
T ss_conf 52223798788
No 6
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A
Probab=1.00 E-value=1 Score=19.31 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 69887411223567768788986501014----57401987645-7421026575228
Q 003603 326 LGHFSVKAIQIAFTLVVFPCLLLAYMGQA----AYLMKYPDSAN-RIFYDSVPDSLFW 378 (808)
Q Consensus 326 lGHFg~~~Iqiaw~~~V~P~LlL~Y~GQa----A~Ll~~p~~~~-n~Fy~svP~~~~w 378 (808)
-.++||.+|||+|-. ||---+ .=|+.|||-+. ||-+.......||
T Consensus 109 ~~Y~GRG~IQLT~n~--------NY~~~g~~lg~dLl~nPdlva~dp~~a~~sA~WfW 158 (243)
T 3cql_A 109 KSYYGRGPIQLSWNY--------NYGPCGEALRVNLLGNPDLVATDRVISFKTALWFW 158 (243)
T ss_dssp CCCCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCGGGGGTCHHHHHHHHHHHH
T ss_pred CEEECCCCCCCCHHH--------HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHH
T ss_conf 844558732112068--------89999999597601498998428188787676665
No 7
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor}
Probab=1.00 E-value=1 Score=18.89 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 698874112235677687889865010145----7401987645-7421026575228
Q 003603 326 LGHFSVKAIQIAFTLVVFPCLLLAYMGQAA----YLMKYPDSAN-RIFYDSVPDSLFW 378 (808)
Q Consensus 326 lGHFg~~~Iqiaw~~~V~P~LlL~Y~GQaA----~Ll~~p~~~~-n~Fy~svP~~~~w 378 (808)
-.++||.+||++|-. ||---+. =|+.|||-+. ||-+.......||
T Consensus 89 ~~Y~GRG~iQLT~~~--------NY~~~g~~lg~dll~nPdlv~~dp~~a~~sA~wfW 138 (204)
T 2cjl_A 89 DKYYGRGPVQLSWNF--------NYKAAGDALGIDLLNNPDLVQNDSAVAWKTGLWYW 138 (204)
T ss_dssp TCCCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH--------HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHH
T ss_conf 450677708785787--------89999999396400499998518798898888876
No 8
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A*
Probab=1.00 E-value=1 Score=18.27 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=19.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCCCC-CCC
Q ss_conf 698874112235677687889865010145----740198764-574
Q 003603 326 LGHFSVKAIQIAFTLVVFPCLLLAYMGQAA----YLMKYPDSA-NRI 367 (808)
Q Consensus 326 lGHFg~~~Iqiaw~~~V~P~LlL~Y~GQaA----~Ll~~p~~~-~n~ 367 (808)
-.++||.+|||+|-. ||---+. =|+.|||-+ .||
T Consensus 165 ~~Y~GRG~IQLT~~~--------NY~~~g~~lg~DLl~nPdlVa~dp 203 (309)
T 2dkv_A 165 RKYYGRGPIQLSFNF--------NYGPAGRAIGVDLLSNPDLVATDA 203 (309)
T ss_dssp CCCCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCTTHHHHCH
T ss_pred CEEECCCCCCCCCHH--------HHHHHHHHHCCCCCCCHHHHHCCH
T ss_conf 744557841123326--------399999994985014989973187
No 9
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A
Probab=1.00 E-value=1 Score=18.18 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=19.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CC
Q ss_conf 6988741122356776878898650101457401987645-74
Q 003603 326 LGHFSVKAIQIAFTLVVFPCLLLAYMGQAAYLMKYPDSAN-RI 367 (808)
Q Consensus 326 lGHFg~~~Iqiaw~~~V~P~LlL~Y~GQaA~Ll~~p~~~~-n~ 367 (808)
-.++||.+|||+|-.==-++ =.++|. =|+.|||-+. ||
T Consensus 110 ~~Y~GRG~IQLT~~~NY~~~--g~~lg~--dLl~nPdlva~dp 148 (244)
T 2z37_A 110 KFYYGRGPMMLSWNYNYGPC--GRDLGL--ELLKNPDVASSDP 148 (244)
T ss_dssp CCCCCBTTTTBCSHHHHHHH--HHHHTS--CTTTCTTHHHHCH
T ss_pred CEEECCCCCCCCHHHHHHHH--HHHHCC--CCCCCHHHHHCCH
T ss_conf 73546874200137789999--999498--5014989874286
No 10
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A
Probab=1.00 E-value=1 Score=18.17 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCC-CCCCCCCCCCCHH
Q ss_conf 88741122356776878898650101457----401987645-7421026575228
Q 003603 328 HFSVKAIQIAFTLVVFPCLLLAYMGQAAY----LMKYPDSAN-RIFYDSVPDSLFW 378 (808)
Q Consensus 328 HFg~~~Iqiaw~~~V~P~LlL~Y~GQaA~----Ll~~p~~~~-n~Fy~svP~~~~w 378 (808)
++||.+|||+|-. ||---+.+ |+.||+.+. ||-+.......||
T Consensus 110 Y~GRG~IQLTg~~--------NY~~~g~~lg~Dll~nPdlva~dp~~a~~sA~wfW 157 (242)
T 3w3e_A 110 YYGRGPIQLTHNY--------NYNAAGRALGVDLINNPDLVARDAVVSFKTALWFW 157 (242)
T ss_dssp CCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHH
T ss_pred EECCCCCCCCCHH--------HHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHH
T ss_conf 4068866577378--------99999987478622598887318899999777641
Done!