Query 003603
Match_columns 808
No_of_seqs 222 out of 767
Neff 4.5
Searched_HMMs 13730
Date Tue Mar 26 18:15:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003603.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1652-1655//hhsearch_scop/003603hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h8pc1 f.14.1.1 (C:22-78) Pot 12.0 26 0.0019 10.6 2.3 42 342-385 13-54 (57)
2 d2yvxa3 f.57.1.1 (A:276-448) M 9.6 31 0.0022 10.1 2.9 117 343-472 11-129 (173)
3 d1dxja_ d.2.1.1 (A:) Plant cla 8.5 35 0.0025 9.8 -0.1 13 328-340 109-121 (242)
4 d2baaa_ d.2.1.1 (A:) Plant cla 7.5 35 0.0026 9.7 -0.4 15 326-340 109-123 (243)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 4.0 94 0.0068 6.9 2.2 27 612-638 57-83 (103)
6 d2ccaa1 a.93.1.3 (A:26-435) Ca 3.5 1.1E+02 0.0078 6.5 0.2 20 100-119 126-146 (410)
7 d1ppaa_ a.133.1.2 (A:) Snake p 3.5 1.1E+02 0.0079 6.5 1.6 25 305-329 1-27 (121)
8 d2h9fa2 d.21.1.4 (A:187-395) H 3.3 1.2E+02 0.0085 6.3 2.0 49 385-435 133-209 (209)
9 d1dx5i1 g.3.11.1 (I:345-387) T 3.3 1.2E+02 0.0086 6.2 0.5 35 607-645 6-40 (43)
10 d1f2qa2 b.1.1.4 (A:86-174) IgE 3.2 1.2E+02 0.0088 6.2 2.2 39 604-642 40-78 (89)
No 1
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.99 E-value=26 Score=10.63 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 87889865010145740198764574210265752288999999
Q 003603 342 VFPCLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 385 (808)
Q Consensus 342 V~P~LlL~Y~GQaA~Ll~~p~~~~n~Fy~svP~~~~wP~~vlAt 385 (808)
.+-++++--++-..|+.++.. ++.-|.++|+.++|-.+-+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHEEEEEC
T ss_conf 999999999999999983589--975536450644645035431
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=9.61 E-value=31 Score=10.10 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 78898650101--4574019876457421026575228899999999999986886626479999998099862269834
Q 003603 343 FPCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHT 420 (808)
Q Consensus 343 ~P~LlL~Y~GQ--aA~Ll~~p~~~~n~Fy~svP~~~~wP~~vlAtlAaIIASQA~ISg~FSii~Qai~Lg~fPr~kIvHT 420 (808)
.|=|+++.+|+ +|+++.+-|+.-+.+- -=..|.|+ ++-++--+++|+.. ++-+++++|-.-+-..
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~---~La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~~--- 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVT---ALAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRDW--- 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTT---SCCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSSH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHCCCCHHHHHHHH-----HHHHHHHCCCCCCHHH---
T ss_conf 99999999999999999999999999999---99999999--92587639999999-----9999986034330139---
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 8855781331055899999853036881780246623201004479999999
Q 003603 421 SRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTL 472 (808)
Q Consensus 421 S~~~~GQIYIP~VNwlLmi~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L 472 (808)
-+....+..+-.+|-+.+...+.....+.....++-+-|++...+|.+.+++
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999989999961445089999999999999999999
No 3
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]}
Probab=8.50 E-value=35 Score=9.76 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=5.9
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 8874112235677
Q 003603 328 HFSVKAIQIAFTL 340 (808)
Q Consensus 328 HFg~~~Iqiaw~~ 340 (808)
++||.+|||+|-.
T Consensus 109 Y~GRG~iQLTg~~ 121 (242)
T d1dxja_ 109 YYGRGPIQLTHNY 121 (242)
T ss_dssp CCCBTTTTBCSHH
T ss_pred CCCCCCCCCCHHH
T ss_conf 2678832252567
No 4
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=7.52 E-value=35 Score=9.72 Aligned_cols=15 Identities=13% Similarity=0.188 Sum_probs=8.5
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 698874112235677
Q 003603 326 LGHFSVKAIQIAFTL 340 (808)
Q Consensus 326 lGHFg~~~Iqiaw~~ 340 (808)
-.++||.+|||+|-.
T Consensus 109 ~~Y~GRG~iQLT~~~ 123 (243)
T d2baaa_ 109 KRYYGRGPIQLSHNY 123 (243)
T ss_dssp CCCCCBTTTTBCSHH
T ss_pred CCCCCCCCCCCCCHH
T ss_conf 864678841143005
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.96 E-value=94 Score=6.89 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=21.3
Q ss_pred CCEEEEEEECCCCCCEEEEEEEEEECC
Q ss_conf 850999984588887899999874203
Q 003603 612 EERFLFRRVGPKDYHMFRCVTRYGYKD 638 (808)
Q Consensus 612 ~eR~~v~~~~~~~~~~~r~v~ryGy~d 638 (808)
+..+.+..+...+-|.|+|+|++.+..
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYLG 83 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCC
T ss_conf 999999015303395799999977699
No 6
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.55 E-value=1.1e+02 Score=6.50 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=8.9
Q ss_pred CCEEEC-CCCCCHHHHHHHHH
Q ss_conf 221651-24763589999830
Q 003603 100 LGVVYG-DMGTSPLYVYSDVF 119 (808)
Q Consensus 100 lGVVyG-DIGTSPLYv~~~~F 119 (808)
+..-|| .|.-+-|+++....
T Consensus 126 iK~ky~~~iS~ADLi~LAG~v 146 (410)
T d2ccaa1 126 VKKKYGKKLSWADLIVFAGNC 146 (410)
T ss_dssp HHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCEEECCCE
T ss_conf 887605465676603363502
No 7
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]}
Probab=3.53 E-value=1.1e+02 Score=6.49 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH--HHCCCCC
Q ss_conf 111101267865102455--4036988
Q 003603 305 AWSALGGCVLCITGAEAM--FADLGHF 329 (808)
Q Consensus 305 ~~~~LG~VvLciTG~EAL--yADlGHF 329 (808)
..+-||..+.|+||..|+ |.|-|.+
T Consensus 1 sl~qf~~MI~~~Tg~~~~~~Y~~YGCy 27 (121)
T d1ppaa_ 1 SVLELGKMILQETGKNAITSYGSYGCN 27 (121)
T ss_dssp CHHHHHHHHHHHHCSCHHHHHTTCTTT
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 978999999876488879999752877
No 8
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.33 E-value=1.2e+02 Score=6.28 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC----------------------------CCCCEEEHHHHH
Q ss_conf 999999986886626479999998099862269834885----------------------------578133105589
Q 003603 385 ALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHTSRK----------------------------RMGQIYIPVINW 435 (808)
Q Consensus 385 tlAaIIASQA~ISg~FSii~Qai~Lg~fPr~kIvHTS~~----------------------------~~GQIYIP~VNw 435 (808)
|.|--+|.-|.|.| |+.+|...-+-=..++|-|.|-. ..|+||+|.=-|
T Consensus 133 Tgav~la~Aa~ipG--Tv~~~~~~~~~~~~v~I~HPsG~~~v~~~~~~~~~~~~v~~a~v~RTARrLm~G~V~vP~~~~ 209 (209)
T d2h9fa2 133 TAAVAIGTAAAIPG--TLVNLAAGGGERSAVRFGHPSGTLRVGAEASQANGEWTVTKAIMSRSARILMEGWVRVPGDAF 209 (209)
T ss_dssp HHHHHHHHHHHSTT--SHHHHHTTSSCCSEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEECEEEEEEEEEEEETTCC
T ss_pred HHHHHHHHHHCCCC--CHHHHHCCCCCCCEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECCHHEEEEEECCCCCC
T ss_conf 77898777651689--668860378888759997699369999999736996479999999834020478897765569
No 9
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.29 E-value=1.2e+02 Score=6.23 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCHH
Q ss_conf 444898509999845888878999998742034565736
Q 003603 607 PMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKEDHH 645 (808)
Q Consensus 607 P~V~~~eR~~v~~~~~~~~~~~r~v~ryGy~d~~~~~~~ 645 (808)
|.-...-.+.-..+++ +-|||+.+-||+-.++. |+
T Consensus 6 PCf~~~CE~qCqP~~~---~~Y~CiCaeGFaP~p~~-Ph 40 (43)
T d1dx5i1 6 PCFRANCEYQCQPLDQ---TSYLCVCAEGFAPIPHE-PH 40 (43)
T ss_dssp GGGGCCCSSEEEECSS---SCEEEECCTTEEEETTE-EE
T ss_pred CCCCCCCCEEEEECCC---CCCEEEECCCCCCCCCC-CC
T ss_conf 4569974034151798---75267812665458998-66
No 10
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.21 E-value=1.2e+02 Score=6.15 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred ECCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCC
Q ss_conf 334444898509999845888878999998742034565
Q 003603 604 VPVPMVRLEERFLFRRVGPKDYHMFRCVTRYGYKDVRKE 642 (808)
Q Consensus 604 ~~vP~V~~~eR~~v~~~~~~~~~~~r~v~ryGy~d~~~~ 642 (808)
.+++.-.....+.+..+...+-|.|+|.+..++.+....
T Consensus 40 ~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~ 78 (89)
T d1f2qa2 40 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESE 78 (89)
T ss_dssp EECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred ECCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCEEEE
T ss_conf 043010222127994411406717999999688872840
Done!