Query 003605
Match_columns 808
No_of_seqs 479 out of 3301
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 17:32:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003605.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1656-1660//hhsearch_pdb/003605hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 422.9 20.6 264 408-691 40-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 420.3 18.0 264 408-691 12-291 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 416.5 19.4 258 409-686 26-303 (308)
4 4ase_A Vascular endothelial gr 1.0 1 1 409.9 18.5 275 398-691 53-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 409.0 19.3 267 405-692 32-303 (307)
6 3hmm_A TGF-beta receptor type- 1.0 1 1 393.7 18.5 274 409-690 3-298 (303)
7 4b9d_A Serine/threonine-protei 1.0 1 1 392.7 16.9 252 408-683 23-277 (350)
8 4fih_A Serine/threonine-protei 1.0 1 1 389.5 18.2 250 409-683 74-324 (346)
9 4fie_A Serine/threonine-protei 1.0 1 1 388.2 21.2 251 408-683 150-401 (423)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 386.0 20.8 259 407-692 56-319 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=422.86 Aligned_cols=264 Identities=27% Similarity=0.454 Sum_probs=222.3
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEE------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 199421145631483789999960------89789999951156123589999999976202365102773332035167
Q 003605 408 TGNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 481 (808)
Q Consensus 408 t~~f~~~~~LG~G~fG~VYkg~l~------~g~~VAVK~lk~~~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~ 481 (808)
.++|.+.+.||+|+||+||+|.+. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+..+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCCCCCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCC
Q ss_conf 88841389980112235556-----------7899999899999999999999998469993884210346815358995
Q 003605 482 LVYELIPNGSVESHLHGVDK-----------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFT 550 (808)
Q Consensus 482 LV~Ey~~~GsL~~~L~~~~~-----------~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~~ 550 (808)
+|||||++|+|.++|+.... ....++|.+++.|+.|+|+||+|||+.+ |+||||||+||||++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCCC
T ss_conf 99982799939999986075410012211245788999999999999999999984088---422666676489889996
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 20104564311354334343222124433446112202988622434007999999971-99999999999850367743
Q 003605 551 PKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWA 629 (808)
Q Consensus 551 vKI~DFGLa~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlT-G~~P~~~~~~~~~~~lv~w~ 629 (808)
+||+|||+|+.....+.....+...||+.|||||++.+..++.++|||||||+||||+| |+.||..... ..+...+
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i 273 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN---TEAIDCI 273 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH---HHHHHHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH---HHHHHHH
T ss_conf 8976660333656787530047645565665826544799996630010578999998289999999899---9999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20013422101002787899999336999999999812649789999999999999999760
Q 003605 630 RPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 691 (808)
Q Consensus 630 ~~~~~~~~~l~~ivDp~l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~Le~i~~~~ 691 (808)
. .. .....+..+...+.+|+.+||+.||++||+|.||++.|+.+.+..
T Consensus 274 ~----~g----------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 274 T----QG----------RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp H----HT----------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred H----CC----------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 8----08----------989986446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=420.33 Aligned_cols=264 Identities=26% Similarity=0.432 Sum_probs=221.7
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEE------CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 199421145631483789999960------89789999951156123589999999976202365102773332035167
Q 003605 408 TGNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 481 (808)
Q Consensus 408 t~~f~~~~~LG~G~fG~VYkg~l~------~g~~VAVK~lk~~~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~ 481 (808)
.++|.+.+.||+|+||+||+|.+. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+.+..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 88929824982078829999998776667788799999967778589999999999998589988862879995699899
Q ss_pred EEEEECCCCCCCCCCCCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCE
Q ss_conf 8884138998011223555---------6789999989999999999999999846999388421034681535899520
Q 003605 482 LVYELIPNGSVESHLHGVD---------KESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPK 552 (808)
Q Consensus 482 LV~Ey~~~GsL~~~L~~~~---------~~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~~vK 552 (808)
+|||||++|+|.++|+... .....++|.++++|+.|+|+||+|||+++ |+||||||+||||++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEE
T ss_conf 999858999689999860864211123577788999999999999999999997599---04676577638987998689
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 104564311354334343222124433446112202988622434007999999971-9999999999985036774320
Q 003605 553 VSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAWARP 631 (808)
Q Consensus 553 I~DFGLa~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlT-G~~P~~~~~~~~~~~lv~w~~~ 631 (808)
|+|||+|+.....+.........||+.|||||++.++.|+.++|||||||+||||+| |+.||..... ..+...+.
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i~- 244 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN---NEVIECIT- 244 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---HHHHHHHH-
T ss_pred ECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH---HHHHHHHH-
T ss_conf 88730010067887416647513470103889870799970366778899999998089999999899---99999998-
Q ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 013422101002787899999336999999999812649789999999999999999760
Q 003605 632 LLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 691 (808)
Q Consensus 632 ~~~~~~~l~~ivDp~l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~Le~i~~~~ 691 (808)
. ......+..+..++.+|+.+||+.||++||+|.||++.|+.+.+..
T Consensus 245 ------------~-~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 245 ------------Q-GRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp ------------H-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred ------------C-CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf ------------0-8988997414399999999976879668929999999998777639
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=416.48 Aligned_cols=258 Identities=27% Similarity=0.396 Sum_probs=215.4
Q ss_pred CCCCEEEEEEECCCEEEEEEEEE------CCCEEEEEEEECC-CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEE
Q ss_conf 99421145631483789999960------8978999995115-6123589999999976202365102773332035167
Q 003605 409 GNFDASRILGEGGFGLVYSGVLD------DGTKVAVKVLKRV-DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARC 481 (808)
Q Consensus 409 ~~f~~~~~LG~G~fG~VYkg~l~------~g~~VAVK~lk~~-~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~ 481 (808)
.++++.+.||+|+||+||+|.+. +++.||||+++.. .....++|.+|+.++++++|||||+++|+|.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 88858669135888489999985776588886999999880149689999999999998589989877364998899889
Q ss_pred EEEEECCCCCCCCCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCC
Q ss_conf 88841389980112235556------------789999989999999999999999846999388421034681535899
Q 003605 482 LVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDF 549 (808)
Q Consensus 482 LV~Ey~~~GsL~~~L~~~~~------------~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~ 549 (808)
+|||||++|+|.++|+.... ....++|..+++|+.|+|+||+|||+.+ ||||||||+||||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEECCCC
T ss_conf 999818999499999862765433332211112468999999999999999999998689---97787362306887999
Q ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCHHHHH
Q ss_conf 520104564311354334343222124433446112202988622434007999999971-9999999999985036774
Q 003605 550 TPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVDMTQPPGQENLVAW 628 (808)
Q Consensus 550 ~vKI~DFGLa~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlT-G~~P~~~~~~~~~~~lv~w 628 (808)
.+||+|||+|+.....+.....+...||+.|||||++.++.|+.++|||||||+||||+| |+.||.... ...+...
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~---~~~~~~~ 259 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS---NQDVVEM 259 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC---HHHHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHH
T ss_conf 7898876020233677740473451257765698998279999630001579999999968999999989---9999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 3200134221010027878999993369999999998126497899999999999999
Q 003605 629 ARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKL 686 (808)
Q Consensus 629 ~~~~~~~~~~l~~ivDp~l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~Le~ 686 (808)
+. .......+.++...+.+|+.+||+.+|++||+|.||++.|+.
T Consensus 260 i~--------------~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 260 IR--------------NRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp HH--------------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HH--------------CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 98--------------199899962036999999999758796579299999999985
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=409.91 Aligned_cols=275 Identities=24% Similarity=0.369 Sum_probs=224.3
Q ss_pred CCCHHHHHHHHCCCCEEEEEEECCCEEEEEEEEEC------CCEEEEEEEECCC-CHHHHHHHHHHHHHHHCC-CCCCEE
Q ss_conf 67989999881994211456314837899999608------9789999951156-123589999999976202-365102
Q 003605 398 TFSASEIEKATGNFDASRILGEGGFGLVYSGVLDD------GTKVAVKVLKRVD-QQGGREFLAEVEMLSRLH-HRNLVK 469 (808)
Q Consensus 398 ~fs~~el~~at~~f~~~~~LG~G~fG~VYkg~l~~------g~~VAVK~lk~~~-~~~~~~f~~Ei~iL~~L~-HpNIV~ 469 (808)
.+..++++...++|++.+.||+|+||+||+|.+.. ++.||||+++... ....++|.+|+++|.++. |+|||+
T Consensus 53 p~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~ 132 (353)
T 4ase_A 53 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 132 (353)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 98885517057995982098217895999999868885447759999997623586899999999999997579984877
Q ss_pred EEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 77333203-516788841389980112235556------------78999998999999999999999984699938842
Q 003605 470 LIGICIEE-QARCLVYELIPNGSVESHLHGVDK------------ESAPLGWDARLKIALGAARALAYLHEDSSPRVIHR 536 (808)
Q Consensus 470 L~g~~~~~-~~~~LV~Ey~~~GsL~~~L~~~~~------------~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHr 536 (808)
++|+|.+. +..++|||||++|+|.++|+.... ....++|..++.|+.|+|+||+|||+.+ ||||
T Consensus 133 l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHR 209 (353)
T 4ase_A 133 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHR 209 (353)
T ss_dssp EEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCS
T ss_pred EEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECC
T ss_conf 8899994697799999838989799999743566654333410110356899999999999999987676278---4357
Q ss_pred EECCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHH-CCCCCC
Q ss_conf 1034681535899520104564311354334343222124433446112202988622434007999999971-999999
Q 003605 537 DFKSSNILLEHDFTPKVSDFGLARSAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLS-GRKPVD 615 (808)
Q Consensus 537 DLKpsNILLd~~~~vKI~DFGLa~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlT-G~~P~~ 615 (808)
||||+||||++++.+||+|||+|+...........+...||+.|||||++.+..|+.++|||||||+||||+| |+.||.
T Consensus 210 DLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~ 289 (353)
T 4ase_A 210 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 289 (353)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSST
T ss_pred CCCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCC
T ss_conf 46721130579997897965432224568872032540146665698999469999755374068999999818999999
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999985036774320013422101002787899999336999999999812649789999999999999999760
Q 003605 616 MTQPPGQENLVAWARPLLTSREGLERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNEC 691 (808)
Q Consensus 616 ~~~~~~~~~lv~w~~~~~~~~~~l~~ivDp~l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~Le~i~~~~ 691 (808)
..... ..+... +........+..+..++.+++.+||+.||++||+|.||++.|+.+++..
T Consensus 290 ~~~~~--~~~~~~--------------i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 290 GVKID--EEFCRR--------------LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp TCCCS--HHHHHH--------------HHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred CCCHH--HHHHHH--------------HHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 98989--999999--------------9738988888657899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=408.97 Aligned_cols=267 Identities=27% Similarity=0.449 Sum_probs=214.4
Q ss_pred HHHHCCCCEEEEEEECCCEEEEEEEEECCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEE
Q ss_conf 9881994211456314837899999608978999995115--61235899999999762023651027733320351678
Q 003605 405 EKATGNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCL 482 (808)
Q Consensus 405 ~~at~~f~~~~~LG~G~fG~VYkg~l~~g~~VAVK~lk~~--~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~L 482 (808)
+...++|.+.+.||+|+||+||+|++. ..||||+++.. .....++|.+|++++++++|||||+++|+|.+ +..++
T Consensus 32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~i 108 (307)
T 3omv_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAI 108 (307)
T ss_dssp BCCTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEE
T ss_pred EECHHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEE
T ss_conf 874799498449820888689999989--968999997268999999999999999985899887469999978-95899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEECCCCCCCCC
Q ss_conf 88413899801122355567899999899999999999999998469993884210346815358995201045643113
Q 003605 483 VYELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSA 562 (808)
Q Consensus 483 V~Ey~~~GsL~~~L~~~~~~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~~vKI~DFGLa~~~ 562 (808)
|||||++|+|.++|+. ....++|.++++|+.|+|+||+|||+.+ |+||||||+||||++++.+||+|||+|+..
T Consensus 109 VmEy~~gGsL~~~l~~---~~~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 182 (307)
T 3omv_A 109 VTQWCEGSSLYKHLHV---QETKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVK 182 (307)
T ss_dssp EEECCSSCBHHHHHHT---SCCCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred EEECCCCCCHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEEC
T ss_conf 9974899878898752---4899999999999999999999997799---527855789978889990899441575424
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 54334343222124433446112202---988622434007999999971999999999998503677432001342210
Q 003605 563 MDEESRHISTRVMGTFGYVAPEYAMT---GHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGL 639 (808)
Q Consensus 563 ~~~~~~~~~~~~~Gt~~Y~APE~l~~---~~~s~ksDVySlGviLlELlTG~~P~~~~~~~~~~~lv~w~~~~~~~~~~l 639 (808)
.............||+.|||||++.+ +.|+.++|||||||+||||+||+.||...... ..+...+ ..
T Consensus 183 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~--~~~~~~~----~~---- 252 (307)
T 3omv_A 183 SRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR--DQIIFMV----GR---- 252 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--HHHHHHH----HT----
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHH----HC----
T ss_conf 6677640315644687724987861468998786877572899999999788998999969--9999999----65----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 10027878999993369999999998126497899999999999999997602
Q 003605 640 ERIIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNECD 692 (808)
Q Consensus 640 ~~ivDp~l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~Le~i~~~~~ 692 (808)
....+.+ ...+.++...+.+|+.+||+.+|++||+|.||++.|+.+...+.
T Consensus 253 -~~~~p~~-~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 253 -GYASPDL-SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp -TCCCCCS-TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred -CCCCCCC-CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCC
T ss_conf -8888872-00354456999999999757797689098999999999745078
No 6
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=393.73 Aligned_cols=274 Identities=23% Similarity=0.303 Sum_probs=205.4
Q ss_pred CCCCEEEEEEECCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC----CEEEEE
Q ss_conf 9942114563148378999996089789999951156123589999999976202365102773332035----167888
Q 003605 409 GNFDASRILGEGGFGLVYSGVLDDGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQ----ARCLVY 484 (808)
Q Consensus 409 ~~f~~~~~LG~G~fG~VYkg~l~~g~~VAVK~lk~~~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~----~~~LV~ 484 (808)
++|.+.+.||+|+||+||+|.+. |+.||||+++... .....+..|+..+.+++|||||+++|+|.+.+ ..+|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 58999789840899399999999-9899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCEEECCCCCCEECCCCCC
Q ss_conf 41389980112235556789999989999999999999999846-----9993884210346815358995201045643
Q 003605 485 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHED-----SSPRVIHRDFKSSNILLEHDFTPKVSDFGLA 559 (808)
Q Consensus 485 Ey~~~GsL~~~L~~~~~~~~~L~~~~~l~Ia~qiA~gL~yLH~~-----~~p~IiHrDLKpsNILLd~~~~vKI~DFGLa 559 (808)
|||++|+|.++|+. ..++|..+++|+.|+|+||+|||++ +.++|+||||||+||||+.++++||+|||+|
T Consensus 81 Ey~~~gsL~~~l~~-----~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR-----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp ECCTTCBHHHHHHH-----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred CCCCCCCHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCC
T ss_conf 17899968999975-----7999899999999999999999985240047898762467842089988997899847987
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCHHHHCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 113543343--432221244334461122029------886224340079999999719999999999985036774320
Q 003605 560 RSAMDEESR--HISTRVMGTFGYVAPEYAMTG------HLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARP 631 (808)
Q Consensus 560 ~~~~~~~~~--~~~~~~~Gt~~Y~APE~l~~~------~~s~ksDVySlGviLlELlTG~~P~~~~~~~~~~~lv~w~~~ 631 (808)
+........ .......||+.|||||++.+. .++.++|||||||+||||+||+.|+........ ....+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~-p~~~~~~~ 234 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL-PYYDLVPS 234 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCC-TTTTTSCS
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHCCCC
T ss_conf 45567777322104642466462698884565455677657067666479999999878998776652235-31002545
Q ss_pred HCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 013422101002787899999-----33699999999981264978999999999999999976
Q 003605 632 LLTSREGLERIIDPSLGNDVP-----FDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNE 690 (808)
Q Consensus 632 ~~~~~~~l~~ivDp~l~~~~~-----~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~Le~i~~~ 690 (808)
..........+.+..++...+ .+....+.+|+.+||+.||++||||.||++.|+.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 4309999998750257998876556658999999999997605975795999999999988987
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=392.72 Aligned_cols=252 Identities=22% Similarity=0.331 Sum_probs=209.1
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEE-CCCEEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEE
Q ss_conf 199421145631483789999960-8978999995115--6123589999999976202365102773332035167888
Q 003605 408 TGNFDASRILGEGGFGLVYSGVLD-DGTKVAVKVLKRV--DQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVY 484 (808)
Q Consensus 408 t~~f~~~~~LG~G~fG~VYkg~l~-~g~~VAVK~lk~~--~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~LV~ 484 (808)
.++|++.+.||+|+||+||+|... +++.||||+++.. .....+++.+|++++++|+|||||++++++.+.+..++||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEECCCCCCCCCCC
Q ss_conf 41389980112235556789999989999999999999999846999388421034681535899520104564311354
Q 003605 485 ELIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMD 564 (808)
Q Consensus 485 Ey~~~GsL~~~L~~~~~~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~~vKI~DFGLa~~~~~ 564 (808)
|||++|+|.++|+. .....+++...+.|+.|++.||+|||+++ |+||||||+||||+.++.+||+|||+|+....
T Consensus 103 Ey~~gg~L~~~i~~--~~~~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 177 (350)
T 4b9d_A 103 DYCEGGDLFKRINA--QKGVLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS 177 (350)
T ss_dssp ECCTTCBHHHHHHH--TTTCCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCH
T ss_pred ECCCCCCHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECC
T ss_conf 48899839999997--38999978999999999999999999899---15135978997987899989764652144068
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 33434322212443344611220298862243400799999997199999999999850367743200134221010027
Q 003605 565 EESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIID 644 (808)
Q Consensus 565 ~~~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlTG~~P~~~~~~~~~~~lv~w~~~~~~~~~~l~~ivD 644 (808)
. ....+..+||+.|||||++.+..|+.++|||||||+||||+||+.||..... . ........
T Consensus 178 ~--~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~---~~~~~i~~---------- 239 (350)
T 4b9d_A 178 T--VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM---K---NLVLKIIS---------- 239 (350)
T ss_dssp H--HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---H---HHHHHHHH----------
T ss_pred C--CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---H---HHHHHHHC----------
T ss_conf 8--5410145788360399998799989599999999999999978799899699---9---99999980----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 878999993369999999998126497899999999999
Q 003605 645 PSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQA 683 (808)
Q Consensus 645 p~l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~ 683 (808)
... ...+......+.+|+.+||+.||++||++.|+++.
T Consensus 240 ~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 240 GSF-PPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp TCC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCC-CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 899-99975579999999999855896679089999639
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=389.46 Aligned_cols=250 Identities=24% Similarity=0.361 Sum_probs=208.3
Q ss_pred CCCCEEEEEEECCCEEEEEEEEE-CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEEC
Q ss_conf 99421145631483789999960-89789999951156123589999999976202365102773332035167888413
Q 003605 409 GNFDASRILGEGGFGLVYSGVLD-DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYELI 487 (808)
Q Consensus 409 ~~f~~~~~LG~G~fG~VYkg~l~-~g~~VAVK~lk~~~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~LV~Ey~ 487 (808)
+.|+..+.||+|+||+||+|... +|+.||||+++.......+.+.+|+++|++++|||||++++++.+.+..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEECCCCCCCCCCCCCC
Q ss_conf 89980112235556789999989999999999999999846999388421034681535899520104564311354334
Q 003605 488 PNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEES 567 (808)
Q Consensus 488 ~~GsL~~~L~~~~~~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~~vKI~DFGLa~~~~~~~~ 567 (808)
++|+|.+++.. ..+++..+..|+.|++.||+|||+++ |+||||||+||||+.++.+||+|||+|+......
T Consensus 154 ~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 224 (346)
T 4fih_A 154 EGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 224 (346)
T ss_dssp TTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-
T ss_pred CCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 99808999871-----89899999999999999999999888---3556278899788799988990275753667887-
Q ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 34322212443344611220298862243400799999997199999999999850367743200134221010027878
Q 003605 568 RHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPSL 647 (808)
Q Consensus 568 ~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlTG~~P~~~~~~~~~~~lv~w~~~~~~~~~~l~~ivDp~l 647 (808)
...+..+||+.|||||++.+..|+.++|||||||++|||++|+.||..... ..+..... . ...+.+
T Consensus 225 -~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i~---~-------~~~~~~ 290 (346)
T 4fih_A 225 -PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---LKAMKMIR---D-------NLPPRL 290 (346)
T ss_dssp -CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH---HHHHHHHH---H-------SSCCCC
T ss_pred -CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHH---C-------CCCCCC
T ss_conf -753465627582799997799999689999999999999978799898599---99999997---1-------799988
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 999993369999999998126497899999999999
Q 003605 648 GNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQA 683 (808)
Q Consensus 648 ~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~ 683 (808)
.........+.+|+.+||..||++||++.|+++.
T Consensus 291 --~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 291 --KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp --SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred --CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf --7502299999999999867995689099999609
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=388.18 Aligned_cols=251 Identities=24% Similarity=0.360 Sum_probs=208.8
Q ss_pred HCCCCEEEEEEECCCEEEEEEEEE-CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEE
Q ss_conf 199421145631483789999960-8978999995115612358999999997620236510277333203516788841
Q 003605 408 TGNFDASRILGEGGFGLVYSGVLD-DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYEL 486 (808)
Q Consensus 408 t~~f~~~~~LG~G~fG~VYkg~l~-~g~~VAVK~lk~~~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~LV~Ey 486 (808)
.+.|+..+.||+|+||.||+|... +|+.||||+++.......+.+.+|+++|+.++|+|||++++++.+.+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 68438616962481848999999999989999998625546899999999999857998987168999989999999969
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCEECCCCCCCCCCCCC
Q ss_conf 38998011223555678999998999999999999999984699938842103468153589952010456431135433
Q 003605 487 IPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARSAMDEE 566 (808)
Q Consensus 487 ~~~GsL~~~L~~~~~~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~~vKI~DFGLa~~~~~~~ 566 (808)
|++|+|.++++. ..+++..+..|+.|++.||+|||+++ |+||||||+||||+.++.+||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~ 301 (423)
T 4fie_A 230 LEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 301 (423)
T ss_dssp CTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC
T ss_pred CCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC
T ss_conf 899828988761-----69899999999999999999999889---0446578777898589998980372654777887
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 43432221244334461122029886224340079999999719999999999985036774320013422101002787
Q 003605 567 SRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLERIIDPS 646 (808)
Q Consensus 567 ~~~~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlTG~~P~~~~~~~~~~~lv~w~~~~~~~~~~l~~ivDp~ 646 (808)
......+||+.|||||++.+..|+.++|||||||++|||++|+.||..... ..+..... . ...+.
T Consensus 302 --~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i~---~-------~~~~~ 366 (423)
T 4fie_A 302 --PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---LKAMKMIR---D-------NLPPR 366 (423)
T ss_dssp --CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH---HHHHHHHH---H-------SCCCC
T ss_pred --CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHH---C-------CCCCC
T ss_conf --643466647472799997799999689999999999999978799898699---99999997---2-------79988
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 8999993369999999998126497899999999999
Q 003605 647 LGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQA 683 (808)
Q Consensus 647 l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~ 683 (808)
+ .........+.+|+.+||..||++||++.|+++.
T Consensus 367 ~--~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 367 L--KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp C--SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred C--CCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 7--6501299999999999867895689099999609
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=386.01 Aligned_cols=259 Identities=22% Similarity=0.219 Sum_probs=211.3
Q ss_pred HHCCCCEEEEEEECCCEEEEEEEEE-CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEE
Q ss_conf 8199421145631483789999960-897899999511561235899999999762023651027733320351678884
Q 003605 407 ATGNFDASRILGEGGFGLVYSGVLD-DGTKVAVKVLKRVDQQGGREFLAEVEMLSRLHHRNLVKLIGICIEEQARCLVYE 485 (808)
Q Consensus 407 at~~f~~~~~LG~G~fG~VYkg~l~-~g~~VAVK~lk~~~~~~~~~f~~Ei~iL~~L~HpNIV~L~g~~~~~~~~~LV~E 485 (808)
..+.|...+.||+|+||.||+|+.. +|+.||||+++... .+.+|+.++++++|||||++++++.+.+..++|||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred CHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 5335176868513878099999988999899999978888-----69999999985799899939999998999999996
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCC-CCEECCCCCCCCCCC
Q ss_conf 1389980112235556789999989999999999999999846999388421034681535899-520104564311354
Q 003605 486 LIPNGSVESHLHGVDKESAPLGWDARLKIALGAARALAYLHEDSSPRVIHRDFKSSNILLEHDF-TPKVSDFGLARSAMD 564 (808)
Q Consensus 486 y~~~GsL~~~L~~~~~~~~~L~~~~~l~Ia~qiA~gL~yLH~~~~p~IiHrDLKpsNILLd~~~-~vKI~DFGLa~~~~~ 564 (808)
||++|+|.++|+. ...+++.....|+.|++.||+|||+++ |+||||||+||||+.++ .+||+|||+|+....
T Consensus 131 y~~gg~L~~~l~~----~~~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~ 203 (336)
T 4g3f_A 131 LLEGGSLGQLIKQ----MGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203 (336)
T ss_dssp CCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred CCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCC
T ss_conf 6599869999987----699999999999999999999999889---042616778879958999799962787768567
Q ss_pred CCCCC---CCCCCCCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 33434---322212443344611220298862243400799999997199999999999850367743200134221010
Q 003605 565 EESRH---ISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVILELLSGRKPVDMTQPPGQENLVAWARPLLTSREGLER 641 (808)
Q Consensus 565 ~~~~~---~~~~~~Gt~~Y~APE~l~~~~~s~ksDVySlGviLlELlTG~~P~~~~~~~~~~~lv~w~~~~~~~~~~l~~ 641 (808)
..... ......||+.|||||++.+..|+.++|||||||+||||+||+.||........... +.......
T Consensus 204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~------i~~~~~~~-- 275 (336)
T 4g3f_A 204 DGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLK------IASEPPPI-- 275 (336)
T ss_dssp ----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHH------HHHSCCGG--
T ss_pred CCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH------HHCCCCCC--
T ss_conf 8765402217854558020089998899989089999999999999978699899899999999------98089980--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 027878999993369999999998126497899999999999999997602
Q 003605 642 IIDPSLGNDVPFDSVAKVAAIASMCVQPEVQHRPFMGEVVQALKLVCNECD 692 (808)
Q Consensus 642 ivDp~l~~~~~~~~~~~l~~Li~~Cl~~dP~~RPsm~eVl~~Le~i~~~~~ 692 (808)
...+......+.+++.+||+.||++||++.|+++.|....++..
T Consensus 276 -------~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~ 319 (336)
T 4g3f_A 276 -------REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVG 319 (336)
T ss_dssp -------GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred -------HHCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf -------02586679999999999762897689599999999999975443
Done!