BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003606
(808 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 190/787 (24%), Positives = 312/787 (39%), Gaps = 206/787 (26%)
Query: 64 RAKSLISLLTLQEKIQQL-------------------SDNASAIPRLGIPAYEWWSESLH 104
+ ++S LTL+EK++ + + +PR+G+PA+
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-------- 54
Query: 105 GIASNGP-GVNFNGTVSS------VTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNL 157
+ ++GP G+ N T + T+FP ++ A+++NR L +G A+ E R Y +
Sbjct: 55 -VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 158 GQAGLTFWAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFG 217
AP +NI R+P GR E EDP++ A FVK Q + G+G
Sbjct: 113 D----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-------GVG-- 159
Query: 218 FREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQP 277
AC KH +A + E +R + +++E+ + +
Sbjct: 160 -----------------------ACIKHFVANNQET----NRMVVDTIVSERALREIYLR 192
Query: 278 PFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGYITSDCDAVATIFEY 336
F +++ K +M +YN++NG L +K R EWGF+G++ SD A
Sbjct: 193 GFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYA------- 245
Query: 337 QNYTKTHEDSAAGVLKAGMD-INCGTCMLRHTQ---------SAIDKGKVQEKDIDRALL 386
D+ LKAG D I G +T+ A+ +GK+ E+ +D +
Sbjct: 246 -------GDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVR 298
Query: 387 NLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNK 446
N+ V L N K PD +H K+A +A +G+VLL+N++ LPL++
Sbjct: 299 NILKV-----LVNAPSFKNYRYSNKPD---LEKHAKVAYEAGAEGVVLLRNEEA-LPLSE 349
Query: 447 NAVSSLAIIGPLVNNISQMGGGYTGIPCSPK---SLLRGL---------------EAYVS 488
N S +A+ G I + GG P+ S+L G+ E Y+
Sbjct: 350 N--SKIALFG--TGQIETIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIK 405
Query: 489 KTHYASGCH------------DVPCN--SDAGFHEAVRIAKKADFVIVVAGLDLTQETED 534
K +P N S+ H ++AKK D ++V ++ E D
Sbjct: 406 KMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIH---KLAKKNDVAVIVIS-RISGEGYD 461
Query: 535 RDRVS--LLLPGQQMSLVTSVAR---TSKRPVILVLTGGGPLDVSFAEADSQISSILWIG 589
R V L + L+ +V+R + VI++L G P++V + IL +
Sbjct: 462 RKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEV--VSWRDLVDGILLVW 519
Query: 590 YPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQ--------YP 641
G+ + +A+++ G NP G+LP T +P ++ VP + Q Y
Sbjct: 520 QAGQETGRIVADVLTGRINPSGKLPTT-FPRDYSDVPSWTFPGEPKDNPQKVVYEEDIYV 578
Query: 642 GRSYRFYTGTQV---YGFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRL 698
G YR+Y V Y FG+GLSYT + Y SD N+
Sbjct: 579 G--YRYYDTFGVEPAYEFGYGLSYTTFEY------------------SDLNV-------- 610
Query: 699 DYVHIDEVTSCTSLRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHT 758
S VQ + N G G V ++ + PK P ++L F +
Sbjct: 611 ---------SFDGETLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRL 661
Query: 759 VAKGSKE 765
+ G E
Sbjct: 662 LNPGESE 668
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 189/787 (24%), Positives = 311/787 (39%), Gaps = 206/787 (26%)
Query: 64 RAKSLISLLTLQEKIQQL-------------------SDNASAIPRLGIPAYEWWSESLH 104
+ ++S LTL+EK++ + + +PR+G+PA+
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-------- 54
Query: 105 GIASNGP-GVNFNGTVSS------VTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNL 157
+ ++GP G+ N T + T+FP ++ A+++NR L +G A+ E R Y +
Sbjct: 55 -VLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 158 GQAGLTFWAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFG 217
AP +NI R+P GR E EDP++ A FVK Q + G+G
Sbjct: 113 D----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQ-------GVG-- 159
Query: 218 FREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQP 277
AC KH +A + E +R + +++E+ + +
Sbjct: 160 -----------------------ACIKHFVANNQET----NRMVVDTIVSERALREIYLR 192
Query: 278 PFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGYITSDCDAVATIFEY 336
F +++ K +M +YN++NG L +K R EWGF+G++ S A
Sbjct: 193 GFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSAWYA------- 245
Query: 337 QNYTKTHEDSAAGVLKAGMD-INCGTCMLRHTQ---------SAIDKGKVQEKDIDRALL 386
D+ LKAG D I G +T+ A+ +GK+ E+ +D +
Sbjct: 246 -------GDNPVEQLKAGNDLIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVR 298
Query: 387 NLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNK 446
N+ V L N K PD +H K+A +A +G+VLL+N++ LPL++
Sbjct: 299 NILKV-----LVNAPSFKNYRYSNKPD---LEKHAKVAYEAGAEGVVLLRNEEA-LPLSE 349
Query: 447 NAVSSLAIIGPLVNNISQMGGGYTGIPCSPK---SLLRGL---------------EAYVS 488
N S +A+ G I + GG P+ S+L G+ E Y+
Sbjct: 350 N--SKIALFG--TGQIETIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIK 405
Query: 489 KTHYASGCH------------DVPCN--SDAGFHEAVRIAKKADFVIVVAGLDLTQETED 534
K +P N S+ H ++AKK D ++V ++ E D
Sbjct: 406 KMRETEEYKPRRDSWGTIIKPKLPENFLSEKEIH---KLAKKNDVAVIVIS-RISGEGYD 461
Query: 535 RDRVS--LLLPGQQMSLVTSVAR---TSKRPVILVLTGGGPLDVSFAEADSQISSILWIG 589
R V L + L+ +V+R + VI++L G P++V + IL +
Sbjct: 462 RKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLNIGSPVEV--VSWRDLVDGILLVW 519
Query: 590 YPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQ--------YP 641
G+ + +A+++ G NP G+LP T +P ++ VP + Q Y
Sbjct: 520 QAGQETGRIVADVLTGRINPSGKLPTT-FPRDYSDVPSWTFPGEPKDNPQKVVYEEDIYV 578
Query: 642 GRSYRFYTGTQV---YGFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRL 698
G YR+Y V Y FG+GLSYT + Y SD N+
Sbjct: 579 G--YRYYDTFGVEPAYEFGYGLSYTTFEY------------------SDLNV-------- 610
Query: 699 DYVHIDEVTSCTSLRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHT 758
S VQ + N G G V ++ + PK P ++L F +
Sbjct: 611 ---------SFDGETLRVQYRIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRL 661
Query: 759 VAKGSKE 765
+ G E
Sbjct: 662 LNPGESE 668
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 162/637 (25%), Positives = 264/637 (41%), Gaps = 114/637 (17%)
Query: 50 DSYPFCNTSLSISTRAKSLISLLTLQEKIQQLS-------------DN--------ASAI 88
D + + + + R L+ +TL EKI Q++ DN ++
Sbjct: 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSV 60
Query: 89 PRLGIPAYEWWS----------------ESLHGIASNGPGVNFNGTVSSVTSFPQVLVSA 132
PR G A EW ++GI + V+ V T FP +
Sbjct: 61 PRKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDA----VHGQNNVYGATIFPHNVGLG 116
Query: 133 ASFNRSLWSNIGSAVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVV 191
A+ + L IG A A+E RA G+ + +AP I + RDPRWGR E+ ED +V
Sbjct: 117 ATRDPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV 170
Query: 192 SAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDL 251
+ E + QG+ K G+ F + +V +AC KH +
Sbjct: 171 QSM-TELIPGLQGDVPKDFTSGMPFVAGKNKV----------------AACAKHFVGDGG 213
Query: 252 EKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQ 311
G N +I + + P +++ +++G S +M SY+ NGV DL
Sbjct: 214 TVDGINEN---NTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVT 269
Query: 312 K-ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDI----NCGTCMLRH 366
++ FKG++ SD + + I ++ A+ + AG+D+ N +
Sbjct: 270 GYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKAS--ILAGLDMIMVPNKYQQFISI 327
Query: 367 TQSAIDKGKVQEKDIDRALLNLFSVQLRLGLFN---GDPRKGKYGKLGPDDVCTSEHKKL 423
++ G + ID A+ + V+ +GLF DP + +LG EH+ L
Sbjct: 328 LTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE--QLG-----KQEHRDL 380
Query: 424 ALDAARQGIVLLKN-----DKKFLPLNKNAVSSLAIIGPLVNNISQMGGGY-------TG 471
A +AAR+ +VLLKN D LPL K A + + G +N+ GG+ TG
Sbjct: 381 AREAARKSLVLLKNGKTSTDAPLLPLPKKA-PKILVAGSHADNLGYQCGGWTIEWQGDTG 439
Query: 472 IPCSPKSLLRGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQE 531
++L ++A V + N DA F ++ + + IV G E
Sbjct: 440 RTTVGTTILEAVKAAVDPSTVVVFAE----NPDAEFVKSGGFS----YAIVAVGEHPYTE 491
Query: 532 TEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYP 591
T+ D ++L +P +S V +V + +L+ G P+ V A S W+ P
Sbjct: 492 TKG-DNLNLTIPEPGLSTVQAVCGGVRCATVLI--SGRPVVVQPLLAASDALVAAWL--P 546
Query: 592 GEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMN 628
G G + + + +FGDF GRLP TW+ +S ++PMN
Sbjct: 547 GSEG-QGVTDALFGDFGFTGRLPRTWF-KSVDQLPMN 581
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 162/637 (25%), Positives = 264/637 (41%), Gaps = 114/637 (17%)
Query: 50 DSYPFCNTSLSISTRAKSLISLLTLQEKIQQLS-------------DN--------ASAI 88
D + + + + R L+ +TL EKI Q++ DN ++
Sbjct: 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSV 60
Query: 89 PRLGIPAYEWWS----------------ESLHGIASNGPGVNFNGTVSSVTSFPQVLVSA 132
PR G A EW ++GI + V+ V T FP +
Sbjct: 61 PRKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDA----VHGQNNVYGATIFPHNVGLG 116
Query: 133 ASFNRSLWSNIGSAVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVV 191
A+ + L IG A A+E RA G+ + +AP I + RDPRWGR E+ ED +V
Sbjct: 117 ATRDPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV 170
Query: 192 SAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDL 251
+ E + QG+ K G+ F + +V +AC KH +
Sbjct: 171 QSM-TELIPGLQGDVPKDFTSGMPFVAGKNKV----------------AACAKHFVGDGG 213
Query: 252 EKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQ 311
G N +I + + P +++ +++G S +M SY+ NGV DL
Sbjct: 214 TVDGINEN---NTIINREGLMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVT 269
Query: 312 K-ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDI----NCGTCMLRH 366
++ FKG++ SD + + I ++ A+ + AG+D+ N +
Sbjct: 270 GYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKAS--ILAGLDMIMVPNKYQQFISI 327
Query: 367 TQSAIDKGKVQEKDIDRALLNLFSVQLRLGLFN---GDPRKGKYGKLGPDDVCTSEHKKL 423
++ G + ID A+ + V+ +GLF DP + +LG EH+ L
Sbjct: 328 LTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE--QLG-----KQEHRDL 380
Query: 424 ALDAARQGIVLLKN-----DKKFLPLNKNAVSSLAIIGPLVNNISQMGGGY-------TG 471
A +AAR+ +VLLKN D LPL K A + + G +N+ GG+ TG
Sbjct: 381 AREAARKSLVLLKNGKTSTDAPLLPLPKKA-PKILVAGSHADNLGYQCGGWTIEWQGDTG 439
Query: 472 IPCSPKSLLRGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQE 531
++L ++A V + N DA F ++ + + IV G E
Sbjct: 440 RTTVGTTILEAVKAAVDPSTVVVFAE----NPDAEFVKSGGFS----YAIVAVGEHPYTE 491
Query: 532 TEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYP 591
T+ D ++L +P +S V +V + +L+ G P+ V A S W+ P
Sbjct: 492 TKG-DNLNLTIPEPGLSTVQAVCGGVRCATVLI--SGRPVVVQPLLAASDALVAAWL--P 546
Query: 592 GEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMN 628
G G + + + +FGDF GRLP TW+ +S ++PMN
Sbjct: 547 GSEG-QGVTDALFGDFGFTGRLPRTWF-KSVDQLPMN 581
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 150/623 (24%), Positives = 251/623 (40%), Gaps = 77/623 (12%)
Query: 204 GENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFN 263
G NW+ GFG G+ + + + A KH I + E +R + +
Sbjct: 125 GRNWE------GFGVDPYLTGIAMGQTINGIQSVGVQATAKHYILNEQE----LNRETIS 174
Query: 264 AMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGY 322
+ ++ + + PF ++ AS +MCSYN+VN AC Q +++ GF GY
Sbjct: 175 SNPDDRTLHELYTWPFADAVQANVAS-VMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGY 233
Query: 323 ITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCGTCMLRHT-QSAIDKGKVQEKDI 381
+ +D +A Q+ T +S + G D N + +A++ +V +
Sbjct: 234 VMTDWNA-------QHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRV 286
Query: 382 DRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKF 441
D + + + G + Y HK AR GIVLLKND
Sbjct: 287 DDMVTRILAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANI 341
Query: 442 LPLNKNA----VSSLAIIGPLVNNI----------SQMGGGYTGIPCSPKSLLRGLEAYV 487
LPL K A V S AIIG N +G G+ + + +A
Sbjct: 342 LPLKKPASIAVVGSAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAIN 401
Query: 488 SKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLD-----LTQETEDRDRVSLLL 542
++ + G N+D A+ D IV D +T E DR +L
Sbjct: 402 TRAS-SQGTQVTLSNTD-NTSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDP 459
Query: 543 PGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEI 602
+LV +VA + VI+V+ G + + A Q+ +++W G P + AL ++
Sbjct: 460 WHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDV 518
Query: 603 IFGDFNPGGRLPMTWYPESFTKVPMNDMNMR-----ADSSRQYPGRSYRFYTGTQV---Y 654
++GD +P G+L T K P ND N R +DS + Y+ + + Y
Sbjct: 519 LWGDVSPSGKLVYT-----IAKSP-NDYNTRIVSGGSDSFSEGLFIDYKHFDDANITPRY 572
Query: 655 GFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRF 714
FG+GLSYT ++Y S L++ ++ K+G + G + ++ VT
Sbjct: 573 EFGYGLSYTKFNY------SRLSVLSTAKSGPATGAVVPGGPSDLFQNVATVT------- 619
Query: 715 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCE 774
+ + N+G V G+ V L+ P + TP KQL GF +++ S +F + +
Sbjct: 620 ---VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIRRRD 676
Query: 775 QLSIANKHGRRILPLGNHVLMVG 797
+ ++P G+ + VG
Sbjct: 677 LSYWDTASQKWVVPSGSFGISVG 699
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 150/623 (24%), Positives = 251/623 (40%), Gaps = 77/623 (12%)
Query: 204 GENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFN 263
G NW+ GFG G+ + + + A KH I + E +R + +
Sbjct: 124 GRNWE------GFGVDPYLTGIAMGQTINGIQSVGVQATAKHYILNEQE----LNRETIS 173
Query: 264 AMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGY 322
+ ++ + + PF ++ AS +MCSYN+VN AC Q +++ GF GY
Sbjct: 174 SNPDDRTLHELYTWPFADAVQANVAS-VMCSYNKVNTTWACEDQYTLQTVLKDQLGFPGY 232
Query: 323 ITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCGTCMLRHT-QSAIDKGKVQEKDI 381
+ +D +A Q+ T +S + G D N + +A++ +V +
Sbjct: 233 VMTDWNA-------QHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRV 285
Query: 382 DRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKF 441
D + + + G + Y HK AR GIVLLKND
Sbjct: 286 DDMVTRILAAWYLTGQ-----DQAGYPSFNISRNVQGNHKTNVRAIARDGIVLLKNDANI 340
Query: 442 LPLNKNA----VSSLAIIGPLVNNI----------SQMGGGYTGIPCSPKSLLRGLEAYV 487
LPL K A V S AIIG N +G G+ + + +A
Sbjct: 341 LPLKKPASIAVVGSAAIIGNHARNSPSCNDKGCDDGALGMGWGSGAVNYPYFVAPYDAIN 400
Query: 488 SKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLD-----LTQETEDRDRVSLLL 542
++ + G N+D A+ D IV D +T E DR +L
Sbjct: 401 TRAS-SQGTQVTLSNTD-NTSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDP 458
Query: 543 PGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEI 602
+LV +VA + VI+V+ G + + A Q+ +++W G P + AL ++
Sbjct: 459 WHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVKAVVWAGLPSQESGNALVDV 517
Query: 603 IFGDFNPGGRLPMTWYPESFTKVPMNDMNMR-----ADSSRQYPGRSYRFYTGTQV---Y 654
++GD +P G+L T K P ND N R +DS + Y+ + + Y
Sbjct: 518 LWGDVSPSGKLVYT-----IAKSP-NDYNTRIVSGGSDSFSEGLFIDYKHFDDANITPRY 571
Query: 655 GFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRF 714
FG+GLSYT ++Y S L++ ++ K+G + G + ++ VT
Sbjct: 572 EFGYGLSYTKFNY------SRLSVLSTAKSGPATGAVVPGGPSDLFQNVATVT------- 618
Query: 715 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCE 774
+ + N+G V G+ V L+ P + TP KQL GF +++ S +F + +
Sbjct: 619 ---VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQSGTATFNIRRRD 675
Query: 775 QLSIANKHGRRILPLGNHVLMVG 797
+ ++P G+ + VG
Sbjct: 676 LSYWDTASQKWVVPSGSFGISVG 698
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 148/607 (24%), Positives = 244/607 (40%), Gaps = 116/607 (19%)
Query: 86 SAIPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGS 145
S + + IP W ++++HG + V T FP + A+ + L IG
Sbjct: 96 STLDGIAIPTV-WGTDAMHG----------HSNVYGATLFPHNIGLGAARDTDLIKRIGQ 144
Query: 146 AVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQG 204
A A E A G+ + +AP + + RD RWGR E+ EDP +V YA E V QG
Sbjct: 145 ATAKEVAA------TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQG 198
Query: 205 ENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNA 264
+ +G F LKG S+R A KH + + G R N
Sbjct: 199 D--------VGADF-----LKG----SNR------IATAKHFVGDGGTERG-VDR--GNT 232
Query: 265 MITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGD---LFQKARNEWGFKG 321
+I E+ D + S I QG S +M S+N NG + GD L +N+ GF G
Sbjct: 233 LIDEKGLRDIHSAGYFSAINQGVQS-VMASFNSWNG--KRVHGDKHLLTDVLKNQLGFDG 289
Query: 322 YITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDI----NCGTCMLRHTQSAIDKGKVQ 377
++ SD +A ++ + A + AG+D+ +T + G +
Sbjct: 290 FVVSDWNA------HKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIA 343
Query: 378 EKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKN 437
E I+ A+ ++R G+F + P + +EH+ LA +A R+ +VLLKN
Sbjct: 344 ESRINDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKN 403
Query: 438 DKKFLPLNKNAVSSLAIIGPLVNNISQMGGGY-----------TGIPCSPKSLLRGLEAY 486
++ LP+ A S + + G N I+ GG+ + P + S+ GL++
Sbjct: 404 NESILPI--KASSRILVAGKGANAINMQAGGWSVSWQGTDNTNSDFP-NATSIFSGLQSQ 460
Query: 487 VSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQET-EDRDRVSLLLPGQ 545
V+K E+ K D IVV G + E D + + +
Sbjct: 461 VTK-----------AGGKITLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETK 509
Query: 546 QMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFG 605
+ + PV+ V G PL V+ S W+ PG G + +A+++
Sbjct: 510 HALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL--PGSEG-EGVADVLLT 566
Query: 606 D------FNPGGRLPMTW--YPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFG 657
+ F+ G+L +W Y + FT + +ND + ++ +G
Sbjct: 567 NKQGKTQFDFTGKLSFSWPKYDDQFT-LNLNDADYDP------------------LFAYG 607
Query: 658 HGLSYTN 664
+GL+Y +
Sbjct: 608 YGLTYQD 614
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 148/607 (24%), Positives = 244/607 (40%), Gaps = 116/607 (19%)
Query: 86 SAIPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGS 145
S + + IP W ++++HG + V T FP + A+ + L IG
Sbjct: 96 STLDGIAIPTV-WGTDAMHG----------HSNVYGATLFPHNIGLGAARDTDLIKRIGQ 144
Query: 146 AVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQG 204
A A E A G+ + +AP + + RD RWGR E+ EDP +V YA E V QG
Sbjct: 145 ATAKEVAA------TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQG 198
Query: 205 ENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNA 264
+ +G F LKG S+R A KH + + G R N
Sbjct: 199 D--------VGADF-----LKG----SNR------IATAKHFVGDGGTERG-VDR--GNT 232
Query: 265 MITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGD---LFQKARNEWGFKG 321
+I E+ D + S I QG S +M S+N NG + GD L +N+ GF G
Sbjct: 233 LIDEKGLRDIHSAGYFSAINQGVQS-VMASFNSWNG--KRVHGDKHLLTDVLKNQLGFDG 289
Query: 322 YITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDI----NCGTCMLRHTQSAIDKGKVQ 377
++ SD +A ++ + A + AG+D+ +T + G +
Sbjct: 290 FVVSDWNA------HKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFYHNTVKQVKAGVIA 343
Query: 378 EKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKN 437
E I+ A+ ++R G+F + P + +EH+ LA +A R+ +VLLKN
Sbjct: 344 ESRINDAVRRFLRAKIRWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKN 403
Query: 438 DKKFLPLNKNAVSSLAIIGPLVNNISQMGGGY-----------TGIPCSPKSLLRGLEAY 486
++ LP+ A S + + G N I+ GG+ + P + S+ GL++
Sbjct: 404 NESILPI--KASSRILVAGKGANAINMQAGGWSVSWQGTDNTNSDFP-NATSIFSGLQSQ 460
Query: 487 VSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQET-EDRDRVSLLLPGQ 545
V+K E+ K D IVV G + E D + + +
Sbjct: 461 VTK-----------AGGKITLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETK 509
Query: 546 QMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFG 605
+ + PV+ V G PL V+ S W+ PG G + +A+++
Sbjct: 510 HALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL--PGSEG-EGVADVLLT 566
Query: 606 D------FNPGGRLPMTW--YPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFG 657
+ F+ G+L +W Y + FT + +ND + ++ +G
Sbjct: 567 NKQGKTQFDFTGKLSFSWPKYDDQFT-LNLNDADYDP------------------LFAYG 607
Query: 658 HGLSYTN 664
+GL+Y +
Sbjct: 608 YGLTYQD 614
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 109/419 (26%), Positives = 173/419 (41%), Gaps = 85/419 (20%)
Query: 58 SLSISTRAKSLISLLTLQEKI----------QQLSDNASAIPRLGIPAYEWWSESLHGIA 107
++ ++RA L++ +TL EKI +Q +PRLGIP A
Sbjct: 47 NVQYTSRAAELVAQMTLDEKISFVHWALDPDRQNVGYLPGVPRLGIPELR---------A 97
Query: 108 SNGP-GVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWA 166
++GP G+ G + T+ P + A++F+ ++ + G + + RA+ G
Sbjct: 98 ADGPNGIRLVG--QTATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMVLG----- 150
Query: 167 PNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKG 226
P +N R P GR ET EDP+V S AV +K QG
Sbjct: 151 PMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQGAG-------------------- 190
Query: 227 FGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQG 286
L KH A + E +R+S NA + EQ + P F + + G
Sbjct: 191 ------------LMTTAKHFAANNQEN----NRFSVNANVDEQTLREIEFPAFEASSKAG 234
Query: 287 KASCIMCSYNQVNGVPACLRGDLFQKA-RNEWGFKGYITSD------CDAVATIFEYQNY 339
AS MC+YN +NG P+C +L R +WGF+G++ SD DA+ + +
Sbjct: 235 AAS-FMCAYNGLNGKPSCGNDELLNNVLRTQWGFQGWVMSDWLATPGTDAITKGLDQEMG 293
Query: 340 TKTHEDSAAGVLKAGMDINCGTCMLRHTQSAIDKGKVQEKDIDRALLNLFSVQLRLGLFN 399
+ D + G ++A+ G V E + R+ + + GL
Sbjct: 294 VELPGD-----VPKGEPSPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLL 348
Query: 400 GDPR-KGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGP 457
P + + K G V +K+A G VLL+N+ + LPL +A S+A+IGP
Sbjct: 349 ATPAPRPERDKAGAQAVS----RKVA----ENGAVLLRNEGQALPLAGDAGKSIAVIGP 399
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 64/277 (23%)
Query: 511 VRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGP 570
V+ A+KA +V A D TE DR +L LPG Q L+++VA + ++++ TG
Sbjct: 560 VKSARKARTAVVFAYDD---GTEGVDRPNLSLPGTQDKLISAVADANPNTIVVLNTGSSV 616
Query: 571 LDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDM 630
L S+ ++L + YPG+AGA+A A +++GD NP G+L + +P + +
Sbjct: 617 LMPWL----SKTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAA------ENQ 665
Query: 631 NMRADSSRQYPG------------RSYRFYTGTQV---YGFGHGLSYTNYSYKFLSAPSE 675
+ A YPG YR++ V + FGHGLSYT+++ SAP+
Sbjct: 666 HAVAGDPTSYPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQ---SAPT- 721
Query: 676 LTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVTNAGDVDGSHVVMLF 735
V ++ V ++V N+G G VV +
Sbjct: 722 ------------------------------VVRTSTGGLKVTVTVRNSGKRAGQEVVQAY 751
Query: 736 -ARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVD 771
P V+ +K+L+G+ +V A +K ++ VD
Sbjct: 752 LGASPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNVD 788
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/420 (25%), Positives = 164/420 (39%), Gaps = 88/420 (20%)
Query: 66 KSLISLLTLQEKIQQLSD----NASAIPRLGIPAYEWWSESLHGIASNGP----GVNFNG 117
+ L+S L EKI LS + I RLGIPA S+GP G F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR---------VSDGPNGIRGTKFFD 57
Query: 118 TVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRW 177
V S FP A++F+R L G +A E+ + + P N+ R P
Sbjct: 58 GVPS-GCFPNGTGLASTFDRDLLETAGKLMAKES-----IAKNAAVILGPTTNMQRGPLG 111
Query: 178 GRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDEL 237
GRG E+ EDP + VK QGE
Sbjct: 112 GRGFESFSEDPYLAGMATSSVVKGMQGEG------------------------------- 140
Query: 238 MLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQ 297
++A KH + DLE R+S N++++E+ + + PFR ++ CIM +YN+
Sbjct: 141 -IAATVKHFVCNDLED----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNK 195
Query: 298 VNGVPACLRGD--LFQKARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGM 355
VNG C + L R+EW + G + SD + YT A +K G+
Sbjct: 196 VNG-EHCSQSKKLLIDILRDEWKWDGMLMSDW--------FGTYT------TAAAIKNGL 240
Query: 356 DINCGTCMLRHTQSAI-----DKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKL 410
DI T++ + + ++ +D+D + + + + + K +
Sbjct: 241 DIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKM---IKFVVDNLEKTGIVEN 297
Query: 411 GPDDVC--TSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGG 468
GP+ T E L A IVLLKN LPL K ++ +IGP + GGG
Sbjct: 298 GPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKE--DNIIVIGPNAKAKTSSGGG 355
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 130/306 (42%), Gaps = 50/306 (16%)
Query: 501 CNSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRP 560
+ D A +A K D +++ GL+ ETE DR ++ LP + LV +V + +
Sbjct: 558 IDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNT 617
Query: 561 VILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPE 620
VI V G P++ + E D+ W Y G A+A++++GD P G+L ++W P
Sbjct: 618 VI-VNQSGTPVEFPWLE-DANALVQAW--YGGNELGNAIADVLYGDVVPNGKLSLSW-PF 672
Query: 621 SFTKVPMNDMNMRADSSRQYPGRS----YRFYTGTQ---VYGFGHGLSYTNYSYKFLSAP 673
P +N + + R G YR+Y Q + FG+GLSYT +
Sbjct: 673 KLQDNPAF-LNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTF-------- 723
Query: 674 SELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVTNAGD-VDGSHVV 732
EL IS K DK + + V N GD GS VV
Sbjct: 724 -ELDIS-DFKVTDDK-------------------------IAISVDVKNTGDKFAGSEVV 756
Query: 733 MLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKH-GRRILPLGN 791
++ P K+L GF++VH K ++ ++ + +S N+ G+ + G
Sbjct: 757 QVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGE 816
Query: 792 HVLMVG 797
+++ VG
Sbjct: 817 YLVSVG 822
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 156/409 (38%), Gaps = 88/409 (21%)
Query: 66 KSLISLLTLQEKIQQLSD----NASAIPRLGIPAYEWWSESLHGIASNGP----GVNFNG 117
+ L+S L EKI LS + I RLGIPA S+GP G F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR---------VSDGPNGIRGTKFFD 57
Query: 118 TVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRW 177
V S FP A++F+R L G A E+ + + P N R P
Sbjct: 58 GVPS-GCFPNGTGLASTFDRDLLETAGKLXAKES-----IAKNAAVILGPTTNXQRGPLG 111
Query: 178 GRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDEL 237
GRG E+ EDP + VK QGE
Sbjct: 112 GRGFESFSEDPYLAGXATSSVVKGXQGEG------------------------------- 140
Query: 238 MLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQ 297
++A KH + DLE R+S N++++E+ + + PFR ++ CI +YN+
Sbjct: 141 -IAATVKHFVCNDLED----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNK 195
Query: 298 VNGVPACLRGD--LFQKARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGM 355
VNG C + L R+EW + G + SD + YT A +K G+
Sbjct: 196 VNG-EHCSQSKKLLIDILRDEWKWDGXLXSDW--------FGTYT------TAAAIKNGL 240
Query: 356 DINCGTCMLRHTQSAI-----DKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKL 410
DI T++ + + ++ +D+D + + + + K +
Sbjct: 241 DIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLK---XIKFVVDNLEKTGIVEN 297
Query: 411 GPDDVC--TSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGP 457
GP+ T E L A IVLLKN LPL K ++ +IGP
Sbjct: 298 GPESTSNNTKETSDLLRKIAADSIVLLKNKNNILPLKKE--DNIIVIGP 344
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 129/306 (42%), Gaps = 50/306 (16%)
Query: 501 CNSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRP 560
+ D A +A K D +++ GL+ ETE DR + LP + LV +V + +
Sbjct: 558 IDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKANPNT 617
Query: 561 VILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPE 620
VI V G P++ + E D+ W Y G A+A++++GD P G+L ++W P
Sbjct: 618 VI-VNQSGTPVEFPWLE-DANALVQAW--YGGNELGNAIADVLYGDVVPNGKLSLSW-PF 672
Query: 621 SFTKVPMNDMNMRADSSRQYPGRS----YRFYTGTQ---VYGFGHGLSYTNYSYKFLSAP 673
P +N + + R G YR+Y Q + FG+GLSYT +
Sbjct: 673 KLQDNPAF-LNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTF-------- 723
Query: 674 SELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFHVQISVTNAGD-VDGSHVV 732
EL IS K DK + + V N GD GS VV
Sbjct: 724 -ELDIS-DFKVTDDK-------------------------IAISVDVKNTGDKFAGSEVV 756
Query: 733 MLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKH-GRRILPLGN 791
++ P K+L GF++VH K ++ ++ + +S N+ G+ + G
Sbjct: 757 QVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGE 816
Query: 792 HVLMVG 797
+++ VG
Sbjct: 817 YLVSVG 822
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 150/390 (38%), Gaps = 80/390 (20%)
Query: 278 PFRSCIEQGKASCIMCSYNQ------------VNG----VPACLRGDLFQKA-RNEWGFK 320
PF+ I+ G A +M ++ Q ++G VPA L + R E GF
Sbjct: 254 PFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFN 312
Query: 321 GYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDIN---CGTCMLRHTQ--------- 368
G I +D + I ++ E++ +KAG+DI L+ Q
Sbjct: 313 GVIVTDALNMKAIADHFG----QEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQAL 368
Query: 369 -SAIDKGKVQEKDIDRALLNLFSVQLRLGLF---NGDPRKGKYGKLGPDDVCTSEHKKLA 424
A+ G + E+ I+ ++ + S++++ G++ N D K K K V + +H K
Sbjct: 369 KEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAK-KIVGSKQHLKAE 427
Query: 425 LDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGI----PCSPKSLL 480
A + + +LKN++ LP S + I+ P + + + P SL
Sbjct: 428 KKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSL- 486
Query: 481 RGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVI----------VVAGLDLTQ 530
SK ++AS HE + K+AD++I VV +
Sbjct: 487 -------SKMNFASQVFKTE-------HE--KQVKEADYIITGSYVVKNDPVVNDGVIDD 530
Query: 531 ETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVS-FAEADSQISSILWIG 589
D + + + P V A +P +L ++ P D + F EA + I+ + G
Sbjct: 531 TISDSSKWATVFP----RAVMKAALQHNKPFVL-MSLRNPYDAANFEEAKALIAVYGFKG 585
Query: 590 YPG----EAGAKALAEIIFGDFNPGGRLPM 615
Y + A IFG P G LP+
Sbjct: 586 YANGRYLQPNIPAGVMAIFGQAKPKGTLPV 615
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 87/390 (22%), Positives = 150/390 (38%), Gaps = 80/390 (20%)
Query: 278 PFRSCIEQGKASCIMCSYNQ------------VNG----VPACLRGDLFQKA-RNEWGFK 320
PF+ I+ G A +M ++ Q ++G VPA L + R E GF
Sbjct: 228 PFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFN 286
Query: 321 GYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDIN---CGTCMLRHTQ--------- 368
G I ++ + I ++ E++ +KAG+DI L+ Q
Sbjct: 287 GVIVTNALNMKAIADHFG----QEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQAL 342
Query: 369 -SAIDKGKVQEKDIDRALLNLFSVQLRLGLF---NGDPRKGKYGKLGPDDVCTSEHKKLA 424
A+ G + E+ I+ ++ + S++++ G++ N D K K K V + +H K
Sbjct: 343 KEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAK-KIVGSKQHLKAE 401
Query: 425 LDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGI----PCSPKSLL 480
A + + +LKN++ LP S + I+ P + + + P SL
Sbjct: 402 KKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSL- 460
Query: 481 RGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVI----------VVAGLDLTQ 530
SK ++AS HE + K+AD++I VV +
Sbjct: 461 -------SKMNFASQVFKTE-------HE--KQVKEADYIITGSYVVKNDPVVNDGVIDD 504
Query: 531 ETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVS-FAEADSQISSILWIG 589
D + + + P V A +P +L ++ P D + F EA + I+ + G
Sbjct: 505 TISDSSKWATVFP----RAVMKAALQHNKPFVL-MSLRNPYDAANFEEAKALIAVYGFKG 559
Query: 590 YPG----EAGAKALAEIIFGDFNPGGRLPM 615
Y + A IFG P G LP+
Sbjct: 560 YANGRYLQPNIPAGVMAIFGQAKPKGTLPV 589
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 87/390 (22%), Positives = 150/390 (38%), Gaps = 80/390 (20%)
Query: 278 PFRSCIEQGKASCIMCSYNQ------------VNG----VPACLRGDLFQKA-RNEWGFK 320
PF+ I+ G A +M ++ Q ++G VPA L + R E GF
Sbjct: 258 PFQKAIDAG-ADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFN 316
Query: 321 GYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDIN---CGTCMLRHTQ--------- 368
G I ++ + I ++ E++ +KAG+DI L+ Q
Sbjct: 317 GVIVTNALNMKAIADHFG----QEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQAL 372
Query: 369 -SAIDKGKVQEKDIDRALLNLFSVQLRLGLF---NGDPRKGKYGKLGPDDVCTSEHKKLA 424
A+ G + E+ I+ ++ + S++++ G++ N D K K K V + +H K
Sbjct: 373 KEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAK-KIVGSKQHLKAE 431
Query: 425 LDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGI----PCSPKSLL 480
A + + +LKN++ LP S + I+ P + + + P SL
Sbjct: 432 KKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSL- 490
Query: 481 RGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKKADFVI----------VVAGLDLTQ 530
SK ++AS HE + K+AD++I VV +
Sbjct: 491 -------SKMNFASQVFKTE-------HE--KQVKEADYIITGSYVVKNDPVVNDGVIDD 534
Query: 531 ETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVS-FAEADSQISSILWIG 589
D + + + P V A +P +L ++ P D + F EA + I+ + G
Sbjct: 535 TISDSSKWATVFP----RAVMKAALQHNKPFVL-MSLRNPYDAANFEEAKALIAVYGFKG 589
Query: 590 YPG----EAGAKALAEIIFGDFNPGGRLPM 615
Y + A IFG P G LP+
Sbjct: 590 YANGRYLQPNIPAGVMAIFGQAKPKGTLPV 619
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain
pdb|3LTL|B Chain B, Crystal Structure Of Human Big1 Sec7 Domain
Length = 211
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 395 LGLFNGDPRKG-----KYGKLG--PDDVCTSEHKKLALDAARQGIVLLKNDK 439
+ LFN P++G + G LG P+D+ H++ LD+ + G L NDK
Sbjct: 26 IDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDK 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,287,653
Number of Sequences: 62578
Number of extensions: 1043250
Number of successful extensions: 2187
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2119
Number of HSP's gapped (non-prelim): 34
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)