Query 003606
Match_columns 808
No_of_seqs 389 out of 2178
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 3E-167 7E-172 1487.1 71.2 750 38-807 26-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 9E-141 2E-145 1264.6 64.3 654 58-803 31-757 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 4.5E-63 9.7E-68 550.5 26.8 311 88-470 55-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 2.2E-58 4.9E-63 500.0 18.9 263 73-391 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 7.7E-47 1.7E-51 412.9 22.1 242 92-395 54-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 4.7E-40 1E-44 343.4 14.5 216 432-664 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 9.7E-20 2.1E-24 155.2 6.1 70 730-800 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 95.7 0.024 5.1E-07 50.7 6.1 51 712-772 19-71 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 94.4 0.13 2.7E-06 44.5 6.6 67 712-797 5-74 (78)
10 PF12690 BsuPI: Intracellular 92.4 0.73 1.6E-05 40.4 8.0 68 714-795 2-81 (82)
11 PF14874 PapD-like: Flagellar- 86.6 4.4 9.6E-05 36.4 8.8 78 712-796 20-97 (102)
12 COG0486 ThdF Predicted GTPase 84.4 47 0.001 38.3 17.2 48 505-566 285-332 (454)
13 cd00407 Urease_beta Urease bet 79.1 2.8 6E-05 38.0 4.1 52 714-769 20-82 (101)
14 PRK13202 ureB urease subunit b 77.8 3.9 8.4E-05 37.2 4.6 52 714-769 21-83 (104)
15 PRK13203 ureB urease subunit b 77.3 3.2 6.8E-05 37.6 3.9 52 714-769 20-82 (102)
16 TIGR00192 urease_beta urease, 75.5 3.9 8.5E-05 37.0 4.0 52 714-769 20-82 (101)
17 COG1470 Predicted membrane pro 74.1 8.3 0.00018 44.0 7.0 76 712-801 284-361 (513)
18 PF06280 DUF1034: Fn3-like dom 71.6 15 0.00032 33.9 7.1 90 712-806 8-110 (112)
19 PRK13201 ureB urease subunit b 70.2 6.2 0.00013 37.4 4.1 53 713-769 19-82 (136)
20 PRK13205 ureB urease subunit b 68.4 6.9 0.00015 37.9 4.1 52 714-769 20-82 (162)
21 PF13473 Cupredoxin_1: Cupredo 68.0 15 0.00033 33.2 6.3 39 715-770 44-82 (104)
22 PRK13204 ureB urease subunit b 67.7 6.9 0.00015 38.0 4.0 52 714-769 43-105 (159)
23 PF06030 DUF916: Bacterial pro 67.2 20 0.00043 33.9 7.0 60 712-773 27-104 (121)
24 PF07385 DUF1498: Protein of u 66.5 6.6 0.00014 40.7 3.9 65 719-798 111-185 (225)
25 PF05506 DUF756: Domain of unk 65.6 21 0.00046 31.5 6.6 53 715-780 21-73 (89)
26 PRK13198 ureB urease subunit b 65.6 8.2 0.00018 37.5 4.0 52 714-769 48-110 (158)
27 COG0832 UreB Urea amidohydrola 65.6 9.3 0.0002 34.4 4.1 53 713-769 19-82 (106)
28 PF00345 PapD_N: Pili and flag 63.8 16 0.00035 34.0 5.8 55 715-772 17-73 (122)
29 PF14796 AP3B1_C: Clathrin-ada 62.2 21 0.00045 34.8 6.2 56 712-773 85-141 (145)
30 PF00927 Transglut_C: Transglu 60.0 15 0.00034 33.4 4.8 60 712-773 15-77 (107)
31 COG1470 Predicted membrane pro 58.0 37 0.0008 39.0 8.1 57 712-774 397-454 (513)
32 TIGR01756 LDH_protist lactate 57.9 7 0.00015 43.1 2.5 56 512-573 56-115 (313)
33 PRK13192 bifunctional urease s 56.8 13 0.00027 38.0 3.8 52 714-769 129-191 (208)
34 PF07610 DUF1573: Protein of u 56.0 22 0.00048 27.3 4.3 44 717-769 1-44 (45)
35 PF10087 DUF2325: Uncharacteri 54.9 84 0.0018 28.1 8.6 40 510-564 42-81 (97)
36 PF09624 DUF2393: Protein of u 53.7 37 0.0008 33.0 6.6 60 712-771 62-132 (149)
37 TIGR02695 azurin azurin. Azuri 52.4 27 0.00059 33.1 5.0 14 758-771 85-98 (125)
38 PRK13986 urease subunit alpha; 52.3 17 0.00036 37.6 3.9 52 714-769 125-187 (225)
39 PF14016 DUF4232: Protein of u 51.6 93 0.002 29.4 8.8 58 713-772 19-82 (131)
40 TIGR01759 MalateDH-SF1 malate 48.5 14 0.0003 41.0 3.0 58 512-573 75-134 (323)
41 PLN00135 malate dehydrogenase 47.5 17 0.00036 40.1 3.3 58 512-573 54-113 (309)
42 cd01338 MDH_choloroplast_like 46.4 16 0.00034 40.6 2.9 56 512-573 74-133 (322)
43 PLN00112 malate dehydrogenase 46.2 15 0.00031 42.6 2.7 58 512-574 172-232 (444)
44 PRK00286 xseA exodeoxyribonucl 46.1 87 0.0019 36.2 9.1 107 440-575 129-239 (438)
45 PRK05442 malate dehydrogenase; 45.2 18 0.00039 40.2 3.2 57 512-574 76-136 (326)
46 COG1160 Predicted GTPases [Gen 44.6 55 0.0012 37.7 6.9 46 508-566 75-120 (444)
47 TIGR00237 xseA exodeoxyribonuc 43.8 1E+02 0.0023 35.6 9.2 60 505-576 173-235 (432)
48 PRK05848 nicotinate-nucleotide 43.1 1.3E+02 0.0028 32.6 9.2 41 307-361 169-209 (273)
49 PF04744 Monooxygenase_B: Mono 43.0 50 0.0011 36.9 6.0 55 712-771 263-334 (381)
50 COG0039 Mdh Malate/lactate deh 41.6 25 0.00054 38.8 3.5 58 512-574 65-124 (313)
51 PF00056 Ldh_1_N: lactate/mala 41.3 7.3 0.00016 37.7 -0.6 55 512-573 65-123 (141)
52 TIGR01757 Malate-DH_plant mala 40.9 20 0.00043 40.7 2.7 56 512-573 116-175 (387)
53 cd00300 LDH_like L-lactate deh 40.8 21 0.00046 39.1 2.9 57 512-573 62-120 (300)
54 TIGR01772 MDH_euk_gproteo mala 40.8 31 0.00068 38.1 4.2 56 512-573 63-121 (312)
55 cd00704 MDH Malate dehydrogena 39.5 23 0.00051 39.2 3.0 58 512-573 72-131 (323)
56 cd00938 HisRS_RNA HisRS_RNA bi 39.0 67 0.0014 25.0 4.4 31 366-396 12-42 (45)
57 cd01337 MDH_glyoxysomal_mitoch 38.0 28 0.00061 38.4 3.3 55 512-573 64-122 (310)
58 PF03808 Glyco_tran_WecB: Glyc 37.9 1.3E+02 0.0029 29.9 7.9 86 450-573 49-139 (172)
59 TIGR01758 MDH_euk_cyt malate d 37.8 29 0.00063 38.5 3.4 56 512-573 71-130 (324)
60 PLN02602 lactate dehydrogenase 37.7 26 0.00056 39.4 3.0 57 512-573 101-159 (350)
61 TIGR00450 mnmE_trmE_thdF tRNA 36.7 4.8E+02 0.01 30.3 13.2 45 282-328 50-100 (442)
62 TIGR01771 L-LDH-NAD L-lactate 36.4 26 0.00055 38.5 2.6 55 512-573 60-118 (299)
63 PF02601 Exonuc_VII_L: Exonucl 33.5 1.5E+02 0.0033 32.5 8.2 107 440-575 8-122 (319)
64 cd05294 LDH-like_MDH_nadp A la 33.4 47 0.001 36.6 4.1 57 512-573 68-126 (309)
65 TIGR01763 MalateDH_bact malate 32.7 38 0.00082 37.2 3.2 53 514-573 67-123 (305)
66 cd06533 Glyco_transf_WecG_TagA 32.6 1.4E+02 0.003 29.8 7.0 40 515-573 98-137 (171)
67 PF06858 NOG1: Nucleolar GTP-b 32.0 1.5E+02 0.0033 24.3 5.7 48 510-566 6-55 (58)
68 PRK13533 7-cyano-7-deazaguanin 31.9 73 0.0016 37.5 5.5 47 313-360 75-121 (487)
69 cd01336 MDH_cytoplasmic_cytoso 31.4 44 0.00094 37.1 3.5 58 512-573 74-133 (325)
70 PF06165 Glyco_transf_36: Glyc 31.4 44 0.00095 30.9 2.9 56 653-738 31-89 (110)
71 PRK05086 malate dehydrogenase; 31.2 44 0.00096 36.8 3.4 56 512-573 65-123 (312)
72 PRK06559 nicotinate-nucleotide 31.0 3.9E+02 0.0083 29.3 10.4 50 309-372 186-236 (290)
73 cd03708 GTPBP_III Domain III o 30.9 2.8E+02 0.006 23.9 7.9 76 713-797 5-82 (87)
74 PRK00066 ldh L-lactate dehydro 30.8 41 0.0009 37.1 3.1 55 512-573 69-127 (315)
75 PF05753 TRAP_beta: Translocon 30.4 1.8E+02 0.0038 29.6 7.3 84 712-801 38-128 (181)
76 cd05291 HicDH_like L-2-hydroxy 30.0 41 0.00089 36.8 3.0 54 513-573 65-122 (306)
77 PRK10528 multifunctional acyl- 29.6 2.2E+02 0.0049 28.5 8.1 44 516-564 71-114 (191)
78 PRK06543 nicotinate-nucleotide 29.5 3.1E+02 0.0068 29.8 9.4 27 346-372 205-232 (281)
79 TIGR01334 modD putative molybd 29.2 3.1E+02 0.0067 29.8 9.3 31 345-388 199-229 (277)
80 PF11906 DUF3426: Protein of u 29.1 2.1E+02 0.0045 27.5 7.5 60 712-771 68-135 (149)
81 cd05293 LDH_1 A subgroup of L- 28.4 39 0.00084 37.3 2.4 54 513-573 68-125 (312)
82 cd05290 LDH_3 A subgroup of L- 28.1 47 0.001 36.5 3.0 55 512-573 64-124 (307)
83 TIGR03079 CH4_NH3mon_ox_B meth 28.0 1.2E+02 0.0027 33.9 6.0 55 712-771 282-353 (399)
84 TIGR00696 wecB_tagA_cpsF bacte 28.0 1.8E+02 0.0038 29.4 6.8 25 515-556 99-123 (177)
85 PF06205 GT36_AF: Glycosyltran 27.2 40 0.00086 30.0 1.8 26 745-772 59-84 (90)
86 PRK06096 molybdenum transport 26.1 2.9E+02 0.0062 30.2 8.4 29 345-386 200-228 (284)
87 TIGR01451 B_ant_repeat conserv 25.7 87 0.0019 24.9 3.3 19 712-730 12-30 (53)
88 PLN00106 malate dehydrogenase 25.0 73 0.0016 35.4 3.8 56 511-572 81-139 (323)
89 PF02421 FeoB_N: Ferrous iron 25.0 1.4E+02 0.003 29.5 5.3 37 515-566 77-113 (156)
90 PRK09918 putative fimbrial cha 24.9 1.8E+02 0.004 30.5 6.6 52 715-771 41-93 (230)
91 PF01345 DUF11: Domain of unkn 24.7 82 0.0018 26.6 3.3 19 712-730 41-59 (76)
92 PLN02303 urease 24.5 84 0.0018 39.1 4.4 52 714-769 150-212 (837)
93 PF00553 CBM_2: Cellulose bind 24.5 93 0.002 28.1 3.8 60 711-772 12-84 (101)
94 PF11611 DUF4352: Domain of un 24.3 1.1E+02 0.0024 28.0 4.4 61 712-772 36-101 (123)
95 PF02450 LCAT: Lecithin:choles 24.0 97 0.0021 35.2 4.7 61 547-607 107-175 (389)
96 cd01857 HSR1_MMR1 HSR1/MMR1. 23.9 1.7E+02 0.0037 27.7 5.7 18 508-525 3-20 (141)
97 PF05690 ThiG: Thiazole biosyn 23.3 1.2E+02 0.0025 32.2 4.6 83 278-375 136-228 (247)
98 PHA00691 hypothetical protein 23.1 81 0.0018 25.6 2.6 22 781-802 11-34 (68)
99 cd09030 DUF1425 Putative perip 23.0 2.8E+02 0.0061 24.9 6.6 58 712-771 32-89 (101)
100 cd05295 MDH_like Malate dehydr 22.7 60 0.0013 37.7 2.6 58 512-574 195-256 (452)
101 PF07233 DUF1425: Protein of u 22.4 2.4E+02 0.0053 25.2 6.0 59 712-772 24-82 (94)
102 PF00699 Urease_beta: Urease b 22.4 78 0.0017 28.8 2.7 54 712-769 17-81 (100)
103 PTZ00117 malate dehydrogenase; 22.3 67 0.0014 35.5 2.8 57 513-574 70-128 (319)
104 PF08885 GSCFA: GSCFA family; 22.2 2.6E+02 0.0056 29.9 7.1 21 507-527 92-112 (251)
105 TIGR02836 spore_IV_A stage IV 22.2 2.5E+02 0.0055 32.5 7.2 55 512-572 139-194 (492)
106 PF09851 SHOCT: Short C-termin 22.1 1.7E+02 0.0036 20.7 3.8 25 365-389 6-30 (31)
107 PRK13556 azoreductase; Provisi 21.9 2.2E+02 0.0048 29.1 6.5 39 507-556 80-118 (208)
108 PF00009 GTP_EFTU: Elongation 21.8 3E+02 0.0065 27.3 7.3 47 507-566 84-130 (188)
109 PRK11199 tyrA bifunctional cho 21.7 1.2E+03 0.025 26.3 13.1 80 420-525 71-151 (374)
110 PF01926 MMR_HSR1: 50S ribosom 21.7 1.7E+02 0.0036 26.4 5.0 46 507-566 70-115 (116)
111 PTZ00325 malate dehydrogenase; 21.6 78 0.0017 35.1 3.2 57 511-573 71-130 (321)
112 PF00703 Glyco_hydro_2: Glycos 21.5 3E+02 0.0065 24.0 6.6 64 712-781 18-81 (110)
113 TIGR03352 VI_chp_3 type VI sec 21.3 1.2E+02 0.0026 29.6 4.0 25 748-772 80-104 (146)
114 PRK13555 azoreductase; Provisi 21.0 2.1E+02 0.0047 29.5 6.1 39 507-556 80-118 (208)
115 PF02401 LYTB: LytB protein; 21.0 2.5E+02 0.0054 30.6 6.7 121 421-577 126-253 (281)
116 cd01339 LDH-like_MDH L-lactate 20.5 92 0.002 33.9 3.4 56 513-574 63-121 (300)
117 PRK13534 7-cyano-7-deazaguanin 20.4 1.4E+02 0.003 36.5 5.1 47 313-360 74-120 (639)
118 PRK15299 fimbrial chaperone pr 20.4 2.1E+02 0.0045 30.1 5.9 56 714-771 38-94 (227)
119 PF13598 DUF4139: Domain of un 20.2 2E+02 0.0044 31.4 6.1 59 712-772 242-313 (317)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=3.4e-167 Score=1487.10 Aligned_cols=750 Identities=73% Similarity=1.253 Sum_probs=654.5
Q ss_pred CCCCCCCCCCCCCCCCccCCCCCHHHHHHHHHhcCCHHHHHHhhcCCCCCCCCCCCCcchhhccccccccccCCccccc-
Q 003606 38 NKPDFPCKPPHFDSYPFCNTSLSISTRAKSLISLLTLQEKIQQLSDNASAIPRLGIPAYEWWSESLHGIASNGPGVNFN- 116 (808)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ll~~mtleEKv~ql~~~~~~~~rlgip~~~~~~~~~~gi~~~~~g~~~~- 116 (808)
..++|+|++++...+||||++++.++|+++||++||||||++||.+.+.+++|||||.+.||+|++||++..++|+++.
T Consensus 26 ~~~~~~c~~~~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~g~~~~~ 105 (779)
T PLN03080 26 AHPQFPCKPPTFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGPGVSFNS 105 (779)
T ss_pred CCCCcCCCCccccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCCcccccc
Confidence 3578999987778899999999999999999999999999999999899999999999999999999998888888775
Q ss_pred CCCCccCcCchHHHHHhhcCHHHHHHHHHHHHHHHHHhhccCCCCceeeccccccCCCCCCCCCCCCCCCChHHHHHHHH
Q 003606 117 GTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTFWAPNINIFRDPRWGRGQETPGEDPMVVSAYAV 196 (808)
Q Consensus 117 ~~~~~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~g~~~laP~~di~r~p~~gr~~esfgeDP~l~~~~a~ 196 (808)
+.+..+|.||++|++|||||++|++++|+++|+|+|+++|.|..|+++|+|++||.|||||||++|||||||+|+++|+.
T Consensus 106 g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~ 185 (779)
T PLN03080 106 GPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSV 185 (779)
T ss_pred CCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHH
Confidence 33457899999999999999999999999999999999776655777899999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeeccccccCccccCCccceecccccCHhHHhhccC
Q 003606 197 EFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQ 276 (808)
Q Consensus 197 a~v~Glq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~v~a~~KHF~g~~~~~~~~~~r~~~~~~~~~~~l~e~~l 276 (808)
|||+|||+.+... . |. +. ..++.+|+||+||||||+++.+.++.|..+++.+++++|+|+||
T Consensus 186 a~V~GlQ~~~~~~--~------------~~---~~-~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl 247 (779)
T PLN03080 186 EFVKGFQGGKWKK--V------------RD---DG-EDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQ 247 (779)
T ss_pred HHHHHhcCCCccc--c------------cc---cc-cCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhh
Confidence 9999999852100 0 00 00 01133499999999999999877788998999999999999999
Q ss_pred hhHHHHHHcCCcceEEeecCccCCcccccCHHHHHHHHhhcCCCeEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCC
Q 003606 277 PPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMD 356 (808)
Q Consensus 277 ~PF~~~i~~g~~~~vM~sy~~vng~pa~~s~~ll~~LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D 356 (808)
+||++||++|.+++||||||++||+|||.|++||++||+||||+|+|||||++|..+...|+++.+.+|++++||+||+|
T Consensus 248 ~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~LR~ewGF~G~VvSD~~a~~~~~~~~~~~~~~~ea~~~Al~AG~D 327 (779)
T PLN03080 248 PPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQKARDEWGFQGYITSDCDAVATIFEYQTYTKSPEDAVADVLKAGMD 327 (779)
T ss_pred HHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHHHHHHhCcCCeEecchHHHHHhhhcccccCCHHHHHHHHHHcCCC
Confidence 99999999998879999999999999999999997799999999999999999999998888888899999999999999
Q ss_pred ccCCccchHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhhhc
Q 003606 357 INCGTCMLRHTQSAIDKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLK 436 (808)
Q Consensus 357 ~~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~~~~~~~~v~~~~h~~lA~eaA~eSiVLLK 436 (808)
|+|+..+.+.|.+||++|+|++++||+||+|||++|+++|+|+.+|...+|.++....+++++|+++|+|+|++||||||
T Consensus 328 l~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLK 407 (779)
T PLN03080 328 INCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLK 407 (779)
T ss_pred cccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEe
Confidence 99988778899999999999999999999999999999999995443344555556778899999999999999999999
Q ss_pred cCCCcccCcCCCCCeEEEEccccccccccCCCcccCCCCcccHHHHHHhhhcceEEecCCCCCCCCCcccHHHHHHHhhc
Q 003606 437 NDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKTHYASGCHDVPCNSDAGFHEAVRIAKK 516 (808)
Q Consensus 437 N~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~sg~~~~~~t~l~gl~~~~~~v~y~~g~~~~~~~~~~~~~~a~~~a~~ 516 (808)
|++++|||++.+.+||+||||+|+....++|+|++.+++.+|++++|+++..++.|..||....+.+...+++|+++|++
T Consensus 408 N~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~ 487 (779)
T PLN03080 408 NDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKR 487 (779)
T ss_pred cCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhcc
Confidence 99999999976567999999999998888899999889999999999998877889999875554445678999999999
Q ss_pred CCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCcccccccccccCccEEEEecCCChhhH
Q 003606 517 ADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGA 596 (808)
Q Consensus 517 aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l~~~~~~~~v~AIL~a~~pG~e~g 596 (808)
||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.+.++++||||+|||||++|
T Consensus 488 aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG 567 (779)
T PLN03080 488 ADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGG 567 (779)
T ss_pred CCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccch
Confidence 99999999999889999999999999999999999999875678999999999999999876678999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCceeCCCCCCCCCCCCCCcCcCCCCCCCCCcccccCCCcceecccccCCCCcccccccCcccc
Q 003606 597 KALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFGHGLSYTNYSYKFLSAPSEL 676 (808)
Q Consensus 597 ~AiAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~lypFGyGLSYTtF~ys~l~~~~~~ 676 (808)
+|+||||||++|||||||+||||+++.++|+++++++++...+|||++||||+.+|+||||||||||||+|+++++++..
T Consensus 568 ~AiAdvLfG~vnPsGkLPvT~~p~~~~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~ 647 (779)
T PLN03080 568 QALAEIIFGDYNPGGRLPMTWYPESFTAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKL 647 (779)
T ss_pred hhhHHHHcCCCCCCCcCeeeecccccccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccc
Confidence 99999999999999999999999989999999888877666678999999999999999999999999999998754322
Q ss_pred ccccccccCCCccccccc-C-CCC-cccccccccccccceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccc
Q 003606 677 TISASLKAGSDKNILQQT-G-SRL-DYVHIDEVTSCTSLRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGF 753 (808)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF 753 (808)
++......... ..+.. . ... ...++.+...|++..++|+|+|||||+++|+||||||+++|.++..+|.|+|+||
T Consensus 648 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF 725 (779)
T PLN03080 648 SLSRSSVQDSI--SRKPLLQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGF 725 (779)
T ss_pred ccccccccccc--ccccccccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCc
Confidence 22100000000 00000 0 000 0000000012333369999999999999999999999999988778999999999
Q ss_pred cccccCCCCEEEEEEEeCCCCCceeEcCCCCEEecCeeEEEEEecCCceEEEEe
Q 003606 754 DRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILPLGNHVLMVGELRHSLTIET 807 (808)
Q Consensus 754 ~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~~s~~~~~~~ 807 (808)
+||+|+||||++|+|+|+++++|++||++++|++|+|+|+|+||+++|+++|++
T Consensus 726 ~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 726 DRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred EeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 999999999999999999756899999999999999999999999999999985
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=8.6e-141 Score=1264.58 Aligned_cols=654 Identities=29% Similarity=0.496 Sum_probs=559.6
Q ss_pred CCCHHHHHHHHHhcCCHHHHHHhhcCCC-----C---------------------------------CCCCCCCCcchhh
Q 003606 58 SLSISTRAKSLISLLTLQEKIQQLSDNA-----S---------------------------------AIPRLGIPAYEWW 99 (808)
Q Consensus 58 ~~~~~~r~~~ll~~mtleEKv~ql~~~~-----~---------------------------------~~~rlgip~~~~~ 99 (808)
+.+.++|+++||++||||||++||++.. . ..+|+|||.+ +.
T Consensus 31 ~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~ 109 (765)
T PRK15098 31 PEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FA 109 (765)
T ss_pred CcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EE
Confidence 3478999999999999999999998521 0 0357788887 56
Q ss_pred ccccccccccCCcccccCCCCccCcCchHHHHHhhcCHHHHHHHHHHHHHHHHHhhccCCCCcee-eccccccCCCCCCC
Q 003606 100 SESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWG 178 (808)
Q Consensus 100 ~~~~~gi~~~~~g~~~~~~~~~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~g~~~-laP~~di~r~p~~g 178 (808)
.|++||. .|.||++++||||||+++++++|+++|+|+|++ |+|+ |||++||.|||+||
T Consensus 110 ~D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~g 168 (765)
T PRK15098 110 YDVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRWG 168 (765)
T ss_pred EeCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCcc
Confidence 6777663 478999999999999999999999999999999 8888 99999999999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhccCCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeeccccccCccccCCcc
Q 003606 179 RGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYDLEKWGNFS 258 (808)
Q Consensus 179 r~~esfgeDP~l~~~~a~a~v~Glq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~v~a~~KHF~g~~~~~~~~~~ 258 (808)
|++|||||||+++++|+.|||+|||+.+.. ...+|++|+|||||||... .+
T Consensus 169 r~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~--------------------------~~~gV~a~~KHFpG~g~~~---~~ 219 (765)
T PRK15098 169 RASEGFGEDTYLTSIMGKTMVKAMQGKSPA--------------------------DRYSVMTSVKHFALYGAVE---GG 219 (765)
T ss_pred ccccCcCCCHHHHHHHHHHHHHHHcCCCCC--------------------------CCCCEEEECcEEeCCCCcc---cC
Confidence 999999999999999999999999986210 0112999999999999542 23
Q ss_pred ceecccccCHhHHhhccChhHHHHHHcCCcceEEeecCccCCcccccCHHHHHH-HHhhcCCCeEEEcchhhHhhhhhcc
Q 003606 259 RYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQK-ARNEWGFKGYITSDCDAVATIFEYQ 337 (808)
Q Consensus 259 r~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~~vM~sy~~vng~pa~~s~~ll~~-LR~e~gf~G~VvSD~~~~~~~~~~~ 337 (808)
|...++.+++++|+|.||+||+++|++|.. +||||||.+||+|||+|+++|++ ||+||||+|+|||||++|..+.. |
T Consensus 220 ~~~~~~~~~~~~l~e~~l~PF~~ai~ag~~-~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~ 297 (765)
T PRK15098 220 RDYNTVDMSPQRMFNDYLPPYKAGLDAGSG-GVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-H 297 (765)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHHHHhCCC-EEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-c
Confidence 444457789999999999999999998855 99999999999999999999999 99999999999999999998874 6
Q ss_pred ccCCCHHHHHHHHHHcCCCccCCcc-chHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhcccCCCCCCCCC--CC-CCCC
Q 003606 338 NYTKTHEDSAAGVLKAGMDINCGTC-MLRHTQSAIDKGKVQEKDIDRALLNLFSVQLRLGLFNGDPRKGKY--GK-LGPD 413 (808)
Q Consensus 338 ~~~~~~~~a~~~al~AG~D~~~~~~-~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~~p~~~~~--~~-~~~~ 413 (808)
++..+.+|++++||+||+||+|.+. +.+.|.+||++|++++++||+||+|||++|+++|||+ +|+...- .. ....
T Consensus 298 ~~~~~~~ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~ 376 (765)
T PRK15098 298 GVAADPEDAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDT 376 (765)
T ss_pred ccCCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCcccccccccccccc
Confidence 7777889999999999999999754 3457999999999999999999999999999999999 5532100 00 0112
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhccCCCcccCcCCCCCeEEEEccccccccccCCCcc--cCCCCcccHHHHHHhhhc---
Q 003606 414 DVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYT--GIPCSPKSLLRGLEAYVS--- 488 (808)
Q Consensus 414 ~v~~~~h~~lA~eaA~eSiVLLKN~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~s--g~~~~~~t~l~gl~~~~~--- 488 (808)
.+.+++|+++|+++|++|||||||++++|||++. +||+||||+++....++|+|+ +.+.+.+|+++||+++..
T Consensus 377 ~~~~~~~~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~ 454 (765)
T PRK15098 377 NAESRLHRKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKA 454 (765)
T ss_pred ccCCHHHHHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCc
Confidence 3457899999999999999999999999999853 699999999998776678775 456778999999999764
Q ss_pred ceEEecCCCCCCC-------------------CCcccHHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHH
Q 003606 489 KTHYASGCHDVPC-------------------NSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSL 549 (808)
Q Consensus 489 ~v~y~~g~~~~~~-------------------~~~~~~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~L 549 (808)
++.|..||+.... .....+++|+++|++||+|||++|.+...++|+.||.+|.||+.|.+|
T Consensus 455 ~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~L 534 (765)
T PRK15098 455 KVLYAKGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDL 534 (765)
T ss_pred eEEEecccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHH
Confidence 4788888853211 113457889999999999999999988889999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEeCCCcccccccccccCccEEEEecCCChhhHHHHHHHHhCCCCCCCCCCceeCCCCCCCCCCCC
Q 003606 550 VTSVARTSKRPVILVLTGGGPLDVSFAEADSQISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMND 629 (808)
Q Consensus 550 I~~v~~~~~kpvVVVl~~g~P~~l~~~~~~~~v~AIL~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~ 629 (808)
|++|++. ++|||||+++|+|++|+|+. ++++|||++||||+++|+|+||||||++|||||||+|| |++..|+|.++
T Consensus 535 i~~v~~~-~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~~~~P~~~ 610 (765)
T PRK15098 535 IAALKAT-GKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSVGQIPVYY 610 (765)
T ss_pred HHHHHHh-CcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCCCcCcccc
Confidence 9999998 89999999999999999874 48999999999999999999999999999999999997 88899999764
Q ss_pred CCcCc---CCCCCCCCCcccccCC--CcceecccccCCCCcccccccCccccccccccccCCCcccccccCCCCcccccc
Q 003606 630 MNMRA---DSSRQYPGRSYRFYTG--TQVYGFGHGLSYTNYSYKFLSAPSELTISASLKAGSDKNILQQTGSRLDYVHID 704 (808)
Q Consensus 630 ~~~~~---~~~~~~~g~~Yr~~~~--~~lypFGyGLSYTtF~ys~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (808)
..... ..+..+.+.+||||+. +|+||||||||||+|+|+++++.... ..
T Consensus 611 ~~~~~~~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~~~------------------------~~-- 664 (765)
T PRK15098 611 NHLNTGRPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSSPT------------------------MK-- 664 (765)
T ss_pred ccCCCCCccccCcccccccceeccCCCccccccCCCCCccEEeeccEecccc------------------------cc--
Confidence 32211 1111112225899986 49999999999999999999832100 00
Q ss_pred cccccccceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEcCCCC
Q 003606 705 EVTSCTSLRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGR 784 (808)
Q Consensus 705 ~~~~~~~~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~ 784 (808)
. ++.++|+|+|||||+++|+||||||+++|.++..+|.|+|+||+||+|+|||+++|+|+|+. ++|++||.+++
T Consensus 665 -~----~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~ 738 (765)
T PRK15098 665 -R----DGKVTASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMK 738 (765)
T ss_pred -C----CCeEEEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCc
Confidence 0 15799999999999999999999999999998889999999999999999999999999998 68999999999
Q ss_pred EEecCeeEEEEEecCCceE
Q 003606 785 RILPLGNHVLMVGELRHSL 803 (808)
Q Consensus 785 ~~~~~G~y~i~vG~~s~~~ 803 (808)
|++|+|+|+|+||.||+++
T Consensus 739 ~~~e~G~y~v~vG~ss~d~ 757 (765)
T PRK15098 739 YVAEPGKFNVFIGLDSARV 757 (765)
T ss_pred EEEeCceEEEEEECCCCcc
Confidence 9999999999999999864
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-63 Score=550.45 Aligned_cols=311 Identities=34% Similarity=0.562 Sum_probs=266.0
Q ss_pred CCCCCCCcchhhccccccccccCCcccccCCCCccCcCchHHHHHhhcCHHHHHHHHHHHHHHHHHhhccCCCCcee-ec
Q 003606 88 IPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTF-WA 166 (808)
Q Consensus 88 ~~rlgip~~~~~~~~~~gi~~~~~g~~~~~~~~~~t~fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~g~~~-la 166 (808)
..|++||.+ +..|..||.. ++...++|.||+++++||+||+++++++|+++|+|+|++ |+|+ ||
T Consensus 55 ~~r~~ipll-i~~D~egG~v--------~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fA 119 (397)
T COG1472 55 EARLGIPLL-IAIDQEGGRV--------QRLREGFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFA 119 (397)
T ss_pred hhccCCCeE-EEEecCCCee--------eeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCcccc
Confidence 358889988 4566666554 332225899999999999999999999999999999999 8888 99
Q ss_pred cccccCCCCCCCCCCCC-CCCChHHHHHHHHHHHhhccCCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeecc
Q 003606 167 PNINIFRDPRWGRGQET-PGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKH 245 (808)
Q Consensus 167 P~~di~r~p~~gr~~es-fgeDP~l~~~~a~a~v~Glq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~v~a~~KH 245 (808)
||+||.|||+|||.+|+ |||||++++.|+.|||+|||+. | |++|+||
T Consensus 120 PvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~----------------------------g----v~at~KH 167 (397)
T COG1472 120 PVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA----------------------------G----VAATIKH 167 (397)
T ss_pred ceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC----------------------------C----ceeeecc
Confidence 99999999999988877 9999999999999999999998 6 9999999
Q ss_pred ccccCccccCCccceecccccCHhHHhhccChhHHHHHHcCC--cceEEeecCccCCcccccCHHHHHH-HHhhcCCCeE
Q 003606 246 LIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGK--ASCIMCSYNQVNGVPACLRGDLFQK-ARNEWGFKGY 322 (808)
Q Consensus 246 F~g~~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~~i~~g~--~~~vM~sy~~vng~pa~~s~~ll~~-LR~e~gf~G~ 322 (808)
|||||....+ +.-.+..++++.|+|.|+.||+.+++.+. +.++|++||.+||.|||.|+++|++ ||++|||+|+
T Consensus 168 FpGhG~~~~d---sh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ 244 (397)
T COG1472 168 FPGHGAVEGD---SHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGV 244 (397)
T ss_pred ccCCCCCcCC---cccccCCCChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeE
Confidence 9999854322 22222678999999999999999999995 6799999999999999999999999 9999999999
Q ss_pred EEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCccCCcc-chH-HHHHHHHcCCccHHHHHHHHHHHHHHHHHhcccCC
Q 003606 323 ITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCGTC-MLR-HTQSAIDKGKVQEKDIDRALLNLFSVQLRLGLFNG 400 (808)
Q Consensus 323 VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~~~-~~~-~l~~av~~g~i~~~~id~av~Ril~~k~~~Glf~~ 400 (808)
|||||++|.++...| .+..+++..+++||+||+|.+. ... .+..+...+ ++++++|++++|||++|+++|+|+
T Consensus 245 ViSD~~~m~~~~~~~---g~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~- 319 (397)
T COG1472 245 VISDDLSMKAIAAAH---GSAADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE- 319 (397)
T ss_pred EEeecchhHHHHHhc---cCHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-
Confidence 999999999876643 4567788889999999998644 332 333334444 999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhhhccCCCcccCcCCCCCeEEEEccccccccccCCCcc
Q 003606 401 DPRKGKYGKLGPDDVCTSEHKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYT 470 (808)
Q Consensus 401 ~p~~~~~~~~~~~~v~~~~h~~lA~eaA~eSiVLLKN~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~s 470 (808)
+|+ . .+|++++++++++|+|||||+..+|||+ .+.++|+|+||+++.. . |+|+
T Consensus 320 ~~~----~---------~~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 320 NPY----S---------SEHRALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred CCC----c---------hhhHHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 653 2 1899999999999999999998999999 4457999999999987 5 6665
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2.2e-58 Score=499.97 Aligned_cols=263 Identities=32% Similarity=0.533 Sum_probs=212.1
Q ss_pred CHHHHHHhhcCC----------------------------CCCCCCCCCCcchhhccccccccccCCcccccCCCCccCc
Q 003606 73 TLQEKIQQLSDN----------------------------ASAIPRLGIPAYEWWSESLHGIASNGPGVNFNGTVSSVTS 124 (808)
Q Consensus 73 tleEKv~ql~~~----------------------------~~~~~rlgip~~~~~~~~~~gi~~~~~g~~~~~~~~~~t~ 124 (808)
|||||++||++. ....+++|||.+ +..|++||+... .....|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~--------~~~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR--------LGGGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS--------TTTTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec--------CCCcCcc
Confidence 899999999831 124678999988 578888887531 1113699
Q ss_pred CchHHHHHhhcCHHHHHHHHHHHHHHHHHhhccCCCCcee-eccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcc
Q 003606 125 FPQVLVSAASFNRSLWSNIGSAVAVEARAMYNLGQAGLTF-WAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQ 203 (808)
Q Consensus 125 fP~~~~laAt~d~~l~~~~g~~~~~E~ra~~~~g~~g~~~-laP~~di~r~p~~gr~~esfgeDP~l~~~~a~a~v~Glq 203 (808)
||+++++|||||+++++++|..+|+|++++ |+|+ |||++||.|+|+|||+.|||||||+++++|+.|||+|+|
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q 145 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQ 145 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999 8888 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeeccccccC-ccccCCccceecccccCHhHHhhccChhHHHH
Q 003606 204 GENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCKHLIAYD-LEKWGNFSRYSFNAMITEQDTEDTFQPPFRSC 282 (808)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~v~a~~KHF~g~~-~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~~ 282 (808)
+. | |++|+||||||+ .++|. ......+++++|+|.||+||+.+
T Consensus 146 ~~----------------------------g----v~~~~KHFpG~~~~d~~~----~~~~~~~~~~~l~~~~l~pF~~~ 189 (299)
T PF00933_consen 146 GA----------------------------G----VAATAKHFPGHGAQDSHR----DLPSVDVSERELREIDLPPFRAA 189 (299)
T ss_dssp CT----------------------------T----SEEEEEEETTGGCSCTTT----TTEEEE--HHHHHHTTSHHHHHH
T ss_pred cc----------------------------c----cccccccccccccccccc----ccceecCCcccccchhcccchhc
Confidence 98 6 999999999973 44443 33345679999999999999999
Q ss_pred H-HcCCcceEEeecCccCCcccccCHHHHHH-HHhhcCCCeEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCccCC
Q 003606 283 I-EQGKASCIMCSYNQVNGVPACLRGDLFQK-ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCG 360 (808)
Q Consensus 283 i-~~g~~~~vM~sy~~vng~pa~~s~~ll~~-LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~ 360 (808)
| ++| +.+|||||+.+|++|+|+|+.++++ ||+||||+|+|||||++|+++...+ +..+++++||+||+||+|.
T Consensus 190 i~~ag-~~~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~~~~~~~al~AG~D~~l~ 264 (299)
T PF00933_consen 190 IKDAG-ADAVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----SIEEAAVRALNAGCDMLLV 264 (299)
T ss_dssp HHHTT--SEEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----THHHHHHHHHHHT-SBEES
T ss_pred ccccc-cceeeeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhcc----ccchHHHHHHhCccCeeCC
Confidence 9 556 4599999999999999999999999 9999999999999999999987633 3779999999999999987
Q ss_pred ccc----hHHHHHHHHcCCccHHHHHHHHHHHHHH
Q 003606 361 TCM----LRHTQSAIDKGKVQEKDIDRALLNLFSV 391 (808)
Q Consensus 361 ~~~----~~~l~~av~~g~i~~~~id~av~Ril~~ 391 (808)
+.. .+.|.++|++|.++++|||+||+|||++
T Consensus 265 ~~~~~~~~~~l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 265 CNDPDDDIDALVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp SSSHHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 543 3789999999999999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=7.7e-47 Score=412.91 Aligned_cols=242 Identities=22% Similarity=0.232 Sum_probs=199.7
Q ss_pred CCCcchhhccccccccccCCcccccCCCCccCcCchHHHHHhhcC------HHHHHHHHHHHHHHHHHhhccCCCCcee-
Q 003606 92 GIPAYEWWSESLHGIASNGPGVNFNGTVSSVTSFPQVLVSAASFN------RSLWSNIGSAVAVEARAMYNLGQAGLTF- 164 (808)
Q Consensus 92 gip~~~~~~~~~~gi~~~~~g~~~~~~~~~~t~fP~~~~laAt~d------~~l~~~~g~~~~~E~ra~~~~g~~g~~~- 164 (808)
++|.+ +..|..|| ++++...++|.||+++++||||| +++++++|+++|+|+|++ |+|+
T Consensus 54 ~~pll-i~iD~EgG--------~v~rl~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~ 118 (337)
T PRK05337 54 RPPLL-IAVDQEGG--------RVQRFREGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLS 118 (337)
T ss_pred CCCCE-EEEecCCC--------EeeecCCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCcc
Confidence 46776 45555555 43443446899999999999999 999999999999999999 7788
Q ss_pred eccccccCCCCCCCCCCCCCCCChHHHHHHHHHHHhhccCCCCCCCCCCCCcccccceeeccCCCCCCCCCccceeeeec
Q 003606 165 WAPNINIFRDPRWGRGQETPGEDPMVVSAYAVEFVKSFQGENWKSDDGGIGFGFREKRVLKGFGEESDRGDELMLSACCK 244 (808)
Q Consensus 165 laP~~di~r~p~~gr~~esfgeDP~l~~~~a~a~v~Glq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~v~a~~K 244 (808)
|+||+||.++++| |+.|+|||||+++++|+.|||+|||+. | |++|+|
T Consensus 119 ~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~----------------------------g----v~~~~K 165 (337)
T PRK05337 119 FAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA----------------------------G----MAATGK 165 (337)
T ss_pred ccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC----------------------------C----CEEEec
Confidence 9999999965554 889999999999999999999999988 6 999999
Q ss_pred cccccCccccCCccceecccccCHhHHhhccChhHHHHHHcCCcceEEee---cCccCCcccccCHHHHHH-HHhhcCCC
Q 003606 245 HLIAYDLEKWGNFSRYSFNAMITEQDTEDTFQPPFRSCIEQGKASCIMCS---YNQVNGVPACLRGDLFQK-ARNEWGFK 320 (808)
Q Consensus 245 HF~g~~~~~~~~~~r~~~~~~~~~~~l~e~~l~PF~~~i~~g~~~~vM~s---y~~vng~pa~~s~~ll~~-LR~e~gf~ 320 (808)
||||||.+..+.|..... ...+.++|++.||+||+.+|++| +.+|||| |+.+|++|||+|++++++ ||+||||+
T Consensus 166 HFpG~G~~~~dsh~~~~~-~~~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~ 243 (337)
T PRK05337 166 HFPGHGAVEADSHVETPV-DERPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFD 243 (337)
T ss_pred ccCCCCCCcCCCCCCCCC-CCCCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCC
Confidence 999999764433332221 22466799999999999999999 4599999 899999999999999999 99999999
Q ss_pred eEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCccCCccc---hHHHHHHHHcCCccHHHHHHHHHHHHHHHHHh
Q 003606 321 GYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCGTCM---LRHTQSAIDKGKVQEKDIDRALLNLFSVQLRL 395 (808)
Q Consensus 321 G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~~~~---~~~l~~av~~g~i~~~~id~av~Ril~~k~~~ 395 (808)
|+|||||++|.++.. ..+.++++++|++||+||+|.+.. ...+.+++.. +.+.+|+++++.+.
T Consensus 244 G~ViSD~l~m~a~~~----~~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 244 GVIFSDDLSMEGAAV----AGDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred EEEEecchhhhhhhh----cCCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 999999999987532 457889999999999999876443 3445555543 77888898887663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=4.7e-40 Score=343.37 Aligned_cols=216 Identities=38% Similarity=0.632 Sum_probs=159.1
Q ss_pred hhhhccCCCcccCcCCCCCeEEEEccccccccccCCCccc-CCCCcccHHHHHHhhhcce--EEecCCCCCCCCCcccHH
Q 003606 432 IVLLKNDKKFLPLNKNAVSSLAIIGPLVNNISQMGGGYTG-IPCSPKSLLRGLEAYVSKT--HYASGCHDVPCNSDAGFH 508 (808)
Q Consensus 432 iVLLKN~~~~LPL~~~~~~kIaViGp~a~~~~~~~G~~sg-~~~~~~t~l~gl~~~~~~v--~y~~g~~~~~~~~~~~~~ 508 (808)
||||||++++|||++.+. ||+|+|+.+.....++|+++. .+.+..+++++|++++... .+..++.. ..+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGDA--VDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCCC--CCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeeccc--cccccchH
Confidence 799999999999998643 999999999987665555543 4556789999999987642 22222211 12456788
Q ss_pred HHHHHhhcCCEEEEEEecCCCCcccc--------CCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCccccccccccc
Q 003606 509 EAVRIAKKADFVIVVAGLDLTQETED--------RDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFAEADS 580 (808)
Q Consensus 509 ~a~~~a~~aD~vIv~vG~~~~~e~Eg--------~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l~~~~~~~ 580 (808)
++++.++++|+|||++|. .++|+ .||.++.||..|.+||+++++. ++|+|||+++++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~-~~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAA-GKKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHH-HSCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHh-cCCeEEEEecCCccccHHHH--h
Confidence 999999999999999992 23444 6999999999999999999999 68999999999999997765 4
Q ss_pred CccEEEEecCCChhhHHHHHHHHhCCCCCCCCCCceeCCCCCCCCCCCCCCcCcCCCCCCCCCcccccCCCcceeccccc
Q 003606 581 QISSILWIGYPGEAGAKALAEIIFGDFNPGGRLPMTWYPESFTKVPMNDMNMRADSSRQYPGRSYRFYTGTQVYGFGHGL 660 (808)
Q Consensus 581 ~v~AIL~a~~pG~e~g~AiAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~lypFGyGL 660 (808)
+++|||++|++|+++++|+||||||++|||||||+|| |++..++|.++... ..+++|++....++|||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~~~~p~~~~~~-------~~~~~~~~~~~~~~~~fG~GL 223 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSMEDIPAYYNYG-------MYGRTYDYDSGPPLYPFGYGL 223 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSGGGTTTTTTTS--------THCCHHHHTTSESB-TT--B
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCChhhCCCccccc-------ccCcccccCCCCccCcCCCCC
Confidence 8999999999999999999999999999999999998 88888888643211 123467777888999999999
Q ss_pred CCCC
Q 003606 661 SYTN 664 (808)
Q Consensus 661 SYTt 664 (808)
|||+
T Consensus 224 syt~ 227 (227)
T PF01915_consen 224 SYTY 227 (227)
T ss_dssp -TT-
T ss_pred EeeC
Confidence 9996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.79 E-value=9.7e-20 Score=155.15 Aligned_cols=70 Identities=36% Similarity=0.586 Sum_probs=60.7
Q ss_pred eeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEcCC-CCEEecCeeEEEEEecCC
Q 003606 730 HVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKH-GRRILPLGNHVLMVGELR 800 (808)
Q Consensus 730 eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~~s 800 (808)
||||||+++|.++..+|.|+|+||+||+|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999998889999999999999999999999999998 689999998 789999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=95.71 E-value=0.024 Score=50.74 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=36.8
Q ss_pred ceEEEEEEEEeCCCCC-cceeEEEEEecCCCCCCCchhhhcccccc-ccCCCCEEEEEEEeCC
Q 003606 712 LRFHVQISVTNAGDVD-GSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVDP 772 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~-G~eVvQlYv~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 772 (808)
+.++++++|+|.|... +.-.|++|+..... +-..| .|+|||+++++|++..
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~----------~~~~i~~L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLDGNSV----------STVTIPSLAPGESETVTFTWTP 71 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEETTEEE----------EEEEESEB-TTEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEECCcee----------ccEEECCcCCCcEEEEEEEEEe
Confidence 5799999999999874 66678888754311 44555 6999999999999986
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.40 E-value=0.13 Score=44.48 Aligned_cols=67 Identities=22% Similarity=0.202 Sum_probs=37.3
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCC--CCchhhhcccccc-ccCCCCEEEEEEEeCCCCCceeEcCCCCEEec
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQ--GTPEKQLIGFDRV-HTVAKGSKEISFGVDPCEQLSIANKHGRRILP 788 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~--~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~ 788 (808)
+.++++++|+|.|..+-. -+.|=+..|..=. ..|. ++ .|+|||+++++|.|.+-+ -.+
T Consensus 5 ~~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~-------~~~~l~pG~s~~~~~~V~vp~-----------~a~ 65 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA-------SVPSLPPGESVTVTFTVTVPA-----------DAA 65 (78)
T ss_dssp EEEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE-------EE--B-TTSEEEEEEEEEE-T-----------T--
T ss_pred CEEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc-------ccccCCCCCEEEEEEEEECCC-----------CCC
Confidence 578999999999966533 2444445554311 1222 22 799999999999998743 134
Q ss_pred CeeEEEEEe
Q 003606 789 LGNHVLMVG 797 (808)
Q Consensus 789 ~G~y~i~vG 797 (808)
+|+|.|.+-
T Consensus 66 ~G~y~v~~~ 74 (78)
T PF10633_consen 66 PGTYTVTVT 74 (78)
T ss_dssp SEEEEEEEE
T ss_pred CceEEEEEE
Confidence 788887663
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=92.38 E-value=0.73 Score=40.43 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=34.1
Q ss_pred EEEEEEEEeCCCCC------cceeEEEEEecCCCC------CCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEcC
Q 003606 714 FHVQISVTNAGDVD------GSHVVMLFARVPKVS------QGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANK 781 (808)
Q Consensus 714 ~~vsv~VtNtG~~~------G~eVvQlYv~~~~~~------~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 781 (808)
+.++++|+|+++.+ .-.-.-+.|.++... ..+. =...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~--FtQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKM--FTQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCch--hhheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 56788888887632 111233444444432 1122 133455678999999999999997 4454
Q ss_pred CCCEEecCeeEEEE
Q 003606 782 HGRRILPLGNHVLM 795 (808)
Q Consensus 782 ~~~~~~~~G~y~i~ 795 (808)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999875
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=86.64 E-value=4.4 Score=36.45 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=49.3
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEcCCCCEEecCee
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILPLGN 791 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 791 (808)
...+.+++|+|+|....+- -++.+... .... -..+..-.|+||++.++++++.+......++..-.-..+.|.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f----~v~~~~~~-~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~ 92 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARF----RVRQPESL-SSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGS 92 (102)
T ss_pred CEEEEEEEEEECCCCCEEE----EEEeCCcC-CCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeE
Confidence 4678999999999887543 33334311 0111 112345569999999999999943456666544334566777
Q ss_pred EEEEE
Q 003606 792 HVLMV 796 (808)
Q Consensus 792 y~i~v 796 (808)
+.|-|
T Consensus 93 ~~i~v 97 (102)
T PF14874_consen 93 FEIPV 97 (102)
T ss_pred EEEEE
Confidence 76655
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=84.36 E-value=47 Score=38.33 Aligned_cols=48 Identities=27% Similarity=0.492 Sum_probs=34.2
Q ss_pred ccHHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEe
Q 003606 505 AGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 566 (808)
Q Consensus 505 ~~~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~ 566 (808)
.+++.+.+.+++||.|++++-... .++....++++ .... ++|+++|++
T Consensus 285 iGIeRs~~~i~~ADlvL~v~D~~~------------~~~~~d~~~~~-~~~~-~~~~i~v~N 332 (454)
T COG0486 285 IGIERAKKAIEEADLVLFVLDASQ------------PLDKEDLALIE-LLPK-KKPIIVVLN 332 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCC------------CCchhhHHHHH-hccc-CCCEEEEEe
Confidence 357788899999999999985321 14555666777 3333 689999987
No 13
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=79.13 E-value=2.8 Score=37.96 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=29.8
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCC----CCCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKV----SQGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+++ +|+=-+..-. ...-....=.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 46899999999987 6653222111 111111111122 2456789999999874
No 14
>PRK13202 ureB urease subunit beta; Reviewed
Probab=77.81 E-value=3.9 Score=37.15 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=29.7
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCCCC----CCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
-+++++|+|||+++ +|+=-+..-..+ .-....=.|+ .-|..+|||+++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 46899999999987 665322211111 0011111111 2456799999999874
No 15
>PRK13203 ureB urease subunit beta; Reviewed
Probab=77.33 E-value=3.2 Score=37.63 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=29.7
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCCC----CCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+|+ +|+=-+..-.. ..--...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999987 66633321111 11111111121 2356789999999874
No 16
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=75.51 E-value=3.9 Score=36.98 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=29.7
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCC----CCCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKV----SQGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+|+ +|+=-+..-. ...--...=.|+ .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999987 6653222111 111111111122 3456899999999874
No 17
>COG1470 Predicted membrane protein [Function unknown]
Probab=74.09 E-value=8.3 Score=44.05 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=46.0
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEe-cCCC-CCCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEcCCCCEEecC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFAR-VPKV-SQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILPL 789 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~-~~~~-~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~ 789 (808)
.++.++|++.|.|+-+-+ .-|=++ .|.. ...--.-+ -.-.||.|.|||+++|++++.+.. -.+|
T Consensus 284 ~t~sf~V~IeN~g~~~d~--y~Le~~g~pe~w~~~Fteg~-~~vt~vkL~~gE~kdvtleV~ps~-----------na~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQDDE--YALELSGLPEGWTAEFTEGE-LRVTSVKLKPGEEKDVTLEVYPSL-----------NATP 349 (513)
T ss_pred CceEEEEEEccCCCCCce--eEEEeccCCCCcceEEeeCc-eEEEEEEecCCCceEEEEEEecCC-----------CCCC
Confidence 578899999999964432 222222 2221 10000000 112567899999999999998842 2457
Q ss_pred eeEEEEEecCCc
Q 003606 790 GNHVLMVGELRH 801 (808)
Q Consensus 790 G~y~i~vG~~s~ 801 (808)
|+|.+.|-.++.
T Consensus 350 G~Ynv~I~A~s~ 361 (513)
T COG1470 350 GTYNVTITASSS 361 (513)
T ss_pred CceeEEEEEecc
Confidence 888877766554
No 18
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=71.61 E-value=15 Score=33.90 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=45.2
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEE-Ee--cC--CCC--CCCc-h----hhhccccccccCCCCEEEEEEEeCCCCCceeE
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLF-AR--VP--KVS--QGTP-E----KQLIGFDRVHTVAKGSKEISFGVDPCEQLSIA 779 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlY-v~--~~--~~~--~~~P-~----k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~ 779 (808)
...+.+++++|.|+.+=..-+... +. .. ... ...+ . .....=.++.|+||++++|+++++..+.+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~~~~-- 85 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPSGLD-- 85 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--GGGH--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehhcCC--
Confidence 357899999999986655444333 11 11 111 0011 1 122222456799999999999999833222
Q ss_pred cCCCCEEecCeeEEEEEecCCc-eEEEE
Q 003606 780 NKHGRRILPLGNHVLMVGELRH-SLTIE 806 (808)
Q Consensus 780 d~~~~~~~~~G~y~i~vG~~s~-~~~~~ 806 (808)
+..+ .+++ -|..+-+.... +++|.
T Consensus 86 ~~~~-~~~e--G~I~~~~~~~~~~lsIP 110 (112)
T PF06280_consen 86 ASNG-PFYE--GFITFKSSDGEPDLSIP 110 (112)
T ss_dssp HTT--EEEE--EEEEEESSTTSEEEEEE
T ss_pred cccC-CEEE--EEEEEEcCCCCEEEEee
Confidence 1222 2332 46666666665 67764
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=70.25 E-value=6.2 Score=37.42 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=30.6
Q ss_pred eEEEEEEEEeCCCCCcceeEEEEEecCCC----CCCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 713 RFHVQISVTNAGDVDGSHVVMLFARVPKV----SQGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 713 ~~~vsv~VtNtG~~~G~eVvQlYv~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
.=+++++|+|||+|+ +|+=-+..-. ...--...=.|| .-|..+|||+++|++.
T Consensus 19 r~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 19 HPETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CCEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 346899999999987 6653222111 111111111122 2466899999999984
No 20
>PRK13205 ureB urease subunit beta; Reviewed
Probab=68.35 E-value=6.9 Score=37.89 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=30.6
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCCC----CCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+++ +|+=-+..-.. ..-....=.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999987 66633221111 11111111222 2466899999999985
No 21
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=68.01 E-value=15 Score=33.24 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=21.8
Q ss_pred EEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEe
Q 003606 715 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGV 770 (808)
Q Consensus 715 ~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l 770 (808)
.|+++++|.|... .+ +.+.. .+ ....|.||++++++|+-
T Consensus 44 ~v~l~~~N~~~~~-h~---~~i~~------------~~-~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HE---FVIPD------------LG-ISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEEEEE-SSS--EE---EEEGG------------GT-EEEEE-TT-EEEEEEEE
T ss_pred eEEEEEEECCCCc-EE---EEECC------------Cc-eEEEECCCCEEEEEEcC
Confidence 4678889998775 22 22221 12 23569999999999843
No 22
>PRK13204 ureB urease subunit beta; Reviewed
Probab=67.72 E-value=6.9 Score=37.97 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCC----CCCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKV----SQGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=.++++|+|||+|+ +|+=-+..-. ...-....=.|| .-|..+|||+++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 45899999999987 6653222111 111111111122 2456899999999984
No 23
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=67.21 E-value=20 Score=33.90 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=37.9
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCC-----------------CCCCchhhhccccc-cccCCCCEEEEEEEeCCC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKV-----------------SQGTPEKQLIGFDR-VHTVAKGSKEISFGVDPC 773 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~-----------------~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~~ 773 (808)
...+++++|+|+++-.- .+++++..-.. +...+..+|....+ |.|+|+|+++|+|+|..-
T Consensus 27 q~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEcC
Confidence 46778889999876433 34444432211 11124445555544 589999999999999863
No 24
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=66.46 E-value=6.6 Score=40.71 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=34.1
Q ss_pred EEEeCCCCCcceeEEEEEecCCCCC--CCc--------hhhhccccccccCCCCEEEEEEEeCCCCCceeEcCCCCEEec
Q 003606 719 SVTNAGDVDGSHVVMLFARVPKVSQ--GTP--------EKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILP 788 (808)
Q Consensus 719 ~VtNtG~~~G~eVvQlYv~~~~~~~--~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~ 788 (808)
++-|.|. |.-+++||.+.+.... ..| .+.+....++.|.||||-| |.+. +-.+ |+.+
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT----L~Pg--~yH~-----Fw~e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT----LPPG--IYHW-----FWGE 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE----E-TT--EEEE-----EEE-
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe----eCCC--Ceee-----EEec
Confidence 3456653 7888888988765432 123 3467889999999999866 6663 2111 3455
Q ss_pred CeeEEEEEec
Q 003606 789 LGNHVLMVGE 798 (808)
Q Consensus 789 ~G~y~i~vG~ 798 (808)
+|. ++||-
T Consensus 178 ~g~--vLigE 185 (225)
T PF07385_consen 178 GGD--VLIGE 185 (225)
T ss_dssp TTS--EEEEE
T ss_pred CCC--EEEEe
Confidence 555 66664
No 25
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=65.60 E-value=21 Score=31.46 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEc
Q 003606 715 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIAN 780 (808)
Q Consensus 715 ~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d 780 (808)
.+.++++|.| +..+.+-|.+.......| .++.|+||++.++.+.+.. .-.+||
T Consensus 21 ~l~l~l~N~g----~~~~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~--s~gwYD 73 (89)
T PF05506_consen 21 NLRLTLSNPG----SAAVTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA--SGGWYD 73 (89)
T ss_pred EEEEEEEeCC----CCcEEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC--CCCcEE
Confidence 6889999985 444555555422221123 6778999999999999953 245565
No 26
>PRK13198 ureB urease subunit beta; Reviewed
Probab=65.56 E-value=8.2 Score=37.45 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCC----CCCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKV----SQGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+|+ +|+=-+..-. ...-....=.|| .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 46899999999987 6653222111 111111111222 2466899999999984
No 27
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=65.56 E-value=9.3 Score=34.45 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=29.3
Q ss_pred eEEEEEEEEeCCCCCcceeEEEEEec---C-CCCCCCchhhhcc-------ccccccCCCCEEEEEEE
Q 003606 713 RFHVQISVTNAGDVDGSHVVMLFARV---P-KVSQGTPEKQLIG-------FDRVHTVAKGSKEISFG 769 (808)
Q Consensus 713 ~~~vsv~VtNtG~~~G~eVvQlYv~~---~-~~~~~~P~k~L~g-------F~kv~L~pGes~~V~~~ 769 (808)
.-+++++|.|||+|. +|+=-+. . +....--...-.| =.-|..+||+.|+|++-
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 456888899999986 5542211 1 1111000001111 13467899999999973
No 28
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=63.85 E-value=16 Score=34.05 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCCCcceeEEEEEecCCC-CCCCchhhhcccccc-ccCCCCEEEEEEEeCC
Q 003606 715 HVQISVTNAGDVDGSHVVMLFARVPKV-SQGTPEKQLIGFDRV-HTVAKGSKEISFGVDP 772 (808)
Q Consensus 715 ~vsv~VtNtG~~~G~eVvQlYv~~~~~-~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 772 (808)
..+++|+|+|+ -.-.+|+.+..... ....+...|.=+=.+ .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57999999998 56678999887211 112333445555555 599999999999 543
No 29
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=62.19 E-value=21 Score=34.85 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=43.6
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccc-cCCCCEEEEEEEeCCC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVH-TVAKGSKEISFGVDPC 773 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~~ 773 (808)
.-+.|.++.+|+++. ++--+-+..+.- ..-.++++|.++. |+||++.++.+-|+-+
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k~l---~~g~~i~~F~~I~~L~pg~s~t~~lgIDF~ 141 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEKKL---PAGMRIHEFPEIESLEPGASVTVSLGIDFN 141 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCCCC---CCCcEeeccCcccccCCCCeEEEEEEEecc
Confidence 357899999999874 555567766542 2335899999996 9999999999999864
No 30
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=60.02 E-value=15 Score=33.37 Aligned_cols=60 Identities=18% Similarity=0.103 Sum_probs=35.9
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEe---cCCCCCCCchhhhccccccccCCCCEEEEEEEeCCC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFAR---VPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPC 773 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~---~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~ 773 (808)
..++|+++++|..+..-+. |++.+. -.+++.. .....+-...+.|+|||++++++.+.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~-~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLT-RDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTE-EEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcc-cccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 4699999999999887444 233332 1222221 1223444555679999999999999873
No 31
>COG1470 Predicted membrane protein [Function unknown]
Probab=58.03 E-value=37 Score=39.02 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=39.1
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhcccccc-ccCCCCEEEEEEEeCCCC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVDPCE 774 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~ 774 (808)
+..++.+.|.|+|..+=+. +-|=+..|.. . ..+.-.+ ++ .|+|||+++|++++..-+
T Consensus 397 ee~~i~i~I~NsGna~Ltd-Ikl~v~~Pqg-W---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~ 454 (513)
T COG1470 397 EEKTIRISIENSGNAPLTD-IKLTVNGPQG-W---EIEVDES-TIPSLEPGESKTVSLTITVPE 454 (513)
T ss_pred ccceEEEEEEecCCCccce-eeEEecCCcc-c---eEEECcc-cccccCCCCcceEEEEEEcCC
Confidence 3567899999999766555 4455666654 1 1234444 55 599999999999998643
No 32
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=57.85 E-value=7 Score=43.14 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=33.7
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++- ..- .++++++.+. .+|-++|++.++|+|+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~N~~I~~~i~~~i~~~-a~~~~ivivvtNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLL--TKNTPIFKATGEALSEY-AKPTVKVLVIGNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHhh-CCCCeEEEEeCCchHH
Confidence 46789999999998642 3566675432 122 3445556666 4453333344689977
No 33
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=56.78 E-value=13 Score=37.99 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=29.6
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCCC----CCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+|+ +|+=-+..-.. ..-..+.=.|| .-|..+|||+++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 45899999999987 66532221111 11111111222 2356789999999874
No 34
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=56.00 E-value=22 Score=27.27 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=26.0
Q ss_pred EEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEE
Q 003606 717 QISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFG 769 (808)
Q Consensus 717 sv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~ 769 (808)
+++++|+|+.. |.+..-..+=. =-...+.|-.|+|||+.+++++
T Consensus 1 ~F~~~N~g~~~------L~I~~v~tsCg---Ct~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP------LVITDVQTSCG---CTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc------EEEEEeeEccC---CEEeeCCcceECCCCEEEEEEE
Confidence 36889998654 33433322210 0122345656999999998875
No 35
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=54.95 E-value=84 Score=28.09 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEE
Q 003606 510 AVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILV 564 (808)
Q Consensus 510 a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVV 564 (808)
..+..+++|+||++++.- ...-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 345778999999988632 2345567888888878888765
No 36
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=53.69 E-value=37 Score=32.97 Aligned_cols=60 Identities=23% Similarity=0.149 Sum_probs=37.0
Q ss_pred ceEEEEEEEEeCCCCCccee-EE--EEEec-CCCC-CCCchhhhcccccc------ccCCCCEEEEEEEeC
Q 003606 712 LRFHVQISVTNAGDVDGSHV-VM--LFARV-PKVS-QGTPEKQLIGFDRV------HTVAKGSKEISFGVD 771 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eV-vQ--lYv~~-~~~~-~~~P~k~L~gF~kv------~L~pGes~~V~~~l~ 771 (808)
+.+-|..+|||+|+++=+++ ++ ++-.. .... ...=..++.+|.+- .|+|||++.-++.++
T Consensus 62 ~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~ 132 (149)
T PF09624_consen 62 ESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFP 132 (149)
T ss_pred cEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEec
Confidence 67999999999999876663 11 22111 1111 11223455556322 299999999999887
No 37
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=52.37 E-value=27 Score=33.13 Aligned_cols=14 Identities=14% Similarity=0.257 Sum_probs=13.0
Q ss_pred cCCCCEEEEEEEeC
Q 003606 758 TVAKGSKEISFGVD 771 (808)
Q Consensus 758 L~pGes~~V~~~l~ 771 (808)
|.|||+.+|+|+.+
T Consensus 85 iggGes~svtF~~~ 98 (125)
T TIGR02695 85 IGGGEKTSVTFDVS 98 (125)
T ss_pred cCCCceEEEEEECC
Confidence 79999999999986
No 38
>PRK13986 urease subunit alpha; Provisional
Probab=52.25 E-value=17 Score=37.58 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=29.7
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCCC----CCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKVS----QGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+|+ +|+=-+..-.. ..--...=.|| .-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46899999999987 66532221111 10011111122 2466899999999884
No 39
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=51.56 E-value=93 Score=29.43 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=39.0
Q ss_pred eEEEEEEEEeCCCC----CcceeEEEEEecCCCC-CC-CchhhhccccccccCCCCEEEEEEEeCC
Q 003606 713 RFHVQISVTNAGDV----DGSHVVMLFARVPKVS-QG-TPEKQLIGFDRVHTVAKGSKEISFGVDP 772 (808)
Q Consensus 713 ~~~vsv~VtNtG~~----~G~eVvQlYv~~~~~~-~~-~P~k~L~gF~kv~L~pGes~~V~~~l~~ 772 (808)
.-.+.|++||+|+. .|-=-|++. +.... +. ...++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 44799999999975 677667766 22222 11 2222333456788999999999988875
No 40
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=48.53 E-value=14 Score=40.96 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChh--hHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++--... -.++++++.+.+.++.|+++. ++|+|+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 56789999999998642 45667754321111 134555666663336666655 589977
No 41
>PLN00135 malate dehydrogenase
Probab=47.54 E-value=17 Score=40.15 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=35.0
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCh--hhHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG--QQMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++---. --.++++++.+.+++..++++. ++|+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHH
Confidence 56789999999998653 3455665432111 1134555666622456666555 589987
No 42
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.38 E-value=16 Score=40.56 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++ -..- .++.+++.+.+.+..++++. ++|+|+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHH
Confidence 56789999999998643 356666543 1222 34445555552235555544 689977
No 43
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=46.23 E-value=15 Score=42.61 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=34.9
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh--HHHHHHHHH-hCCCCEEEEEeCCCccccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ--MSLVTSVAR-TSKRPVILVLTGGGPLDVS 574 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~LI~~v~~-~~~kpvVVVl~~g~P~~l~ 574 (808)
+..++||+||++.|... ++|.+|.++--...+ .++.+++.+ . +++.+|++. ++|+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl~~N~~I~k~i~~~I~~~a-~p~~ivIVV-sNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLLDINGQIFAEQGKALNEVA-SRNVKVIVV-GNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEc-CCcHHHH
Confidence 46789999999988642 456677543211111 344455555 3 455665554 6899873
No 44
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=46.05 E-value=87 Score=36.18 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=57.2
Q ss_pred CcccCcCCCCCeEEEEccccccccccCCCcccCCCCcccHHHHHHhhhcc--eEEecCCCCCCCCCcccHHHHHHHhhc-
Q 003606 440 KFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSK--THYASGCHDVPCNSDAGFHEAVRIAKK- 516 (808)
Q Consensus 440 ~~LPL~~~~~~kIaViGp~a~~~~~~~G~~sg~~~~~~t~l~gl~~~~~~--v~y~~g~~~~~~~~~~~~~~a~~~a~~- 516 (808)
.-||.-+ ++|+||-...... +..++..++.+.+. +.+.+ +..-.......+.+|++.+..
T Consensus 129 ~~lP~~p---~~I~viTs~~gAa-------------~~D~~~~~~~r~p~~~~~~~~-~~vQG~~A~~~i~~al~~~~~~ 191 (438)
T PRK00286 129 KPLPFFP---KRIGVITSPTGAA-------------IRDILTVLRRRFPLVEVIIYP-TLVQGEGAAASIVAAIERANAR 191 (438)
T ss_pred CCCCCCC---CEEEEEeCCccHH-------------HHHHHHHHHhcCCCCeEEEec-CcCcCccHHHHHHHHHHHhcCC
Confidence 3466554 6999987432211 22455555555542 22211 111111123445566666655
Q ss_pred -CCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCcccccc
Q 003606 517 -ADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSF 575 (808)
Q Consensus 517 -aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l~~ 575 (808)
.|++|++=|. +...+|. +=++.++++++++. ..|||.= .|.=.|.+-
T Consensus 192 ~~Dviii~RGG--------GS~eDL~-~Fn~e~v~~ai~~~-~~Pvis~--IGHE~D~tl 239 (438)
T PRK00286 192 GEDVLIVARGG--------GSLEDLW-AFNDEAVARAIAAS-RIPVISA--VGHETDFTI 239 (438)
T ss_pred CCCEEEEecCC--------CCHHHhh-ccCcHHHHHHHHcC-CCCEEEe--ccCCCCccH
Confidence 5999976552 2233432 44678899999887 7887653 365555543
No 45
>PRK05442 malate dehydrogenase; Provisional
Probab=45.24 E-value=18 Score=40.17 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=34.4
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDVS 574 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l~ 574 (808)
+..++||+||++.|.. ..+|.+|.++- ..- .++++++.+.+++..++++. ++|+|+.
T Consensus 76 ~~~~daDiVVitaG~~---~k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARP---RGPGMERKDLL--EANGAIFTAQGKALNEVAARDVKVLVV-GNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCC---CCCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHH
Confidence 5678999999998854 23566775432 222 34445555542344555544 5899873
No 46
>COG1160 Predicted GTPases [General function prediction only]
Probab=44.65 E-value=55 Score=37.70 Aligned_cols=46 Identities=26% Similarity=0.435 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEe
Q 003606 508 HEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 566 (808)
Q Consensus 508 ~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~ 566 (808)
+++..++..||++|+++... +| +.....++.+-|... +||+|+|++
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~G-------it~~D~~ia~~Lr~~-~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----EG-------ITPADEEIAKILRRS-KKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----CC-------CCHHHHHHHHHHHhc-CCCEEEEEE
Confidence 45667889999999998522 22 345556666666654 799999998
No 47
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=43.81 E-value=1e+02 Score=35.59 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=36.1
Q ss_pred ccHHHHHHHhhc---CCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCccccccc
Q 003606 505 AGFHEAVRIAKK---ADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSFA 576 (808)
Q Consensus 505 ~~~~~a~~~a~~---aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l~~~ 576 (808)
..+..|++.+.. .|++||+=|. +...+| ++=++..+++++++. ..|||.- .|.=.|.+-.
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL-~~Fn~e~~~rai~~~-~~Pvis~--iGHe~D~ti~ 235 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRGG--------GSLEDL-WSFNDEKVARAIFLS-KIPIISA--VGHETDFTIS 235 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCC--------CCHHHh-hhcCcHHHHHHHHcC-CCCEEEe--cCcCCCccHH
Confidence 345555554443 6999986552 222333 234678899999876 7787653 3666665533
No 48
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.14 E-value=1.3e+02 Score=32.62 Aligned_cols=41 Identities=29% Similarity=0.503 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCeEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCccCCc
Q 003606 307 GDLFQKARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCGT 361 (808)
Q Consensus 307 ~~ll~~LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~~ 361 (808)
...+..+|....|.=.|+.++. +.+| +..|+++|.|++|-.
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~-------------tlee-a~~A~~~GaDiI~LD 209 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECE-------------SLEE-AKNAMNAGADIVMCD 209 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeC-------------CHHH-HHHHHHcCCCEEEEC
Confidence 3445558899988666777764 3334 567899999999753
No 49
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=43.00 E-value=50 Score=36.88 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=29.9
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEE------EecCCCC-----CCCchhhhccc------cccccCCCCEEEEEEEeC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLF------ARVPKVS-----QGTPEKQLIGF------DRVHTVAKGSKEISFGVD 771 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlY------v~~~~~~-----~~~P~k~L~gF------~kv~L~pGes~~V~~~l~ 771 (808)
.+++++++|||.|+- .|+|= ++..+.. ...|. +|.+- ..--|+|||++++++++.
T Consensus 263 R~l~~~l~VtN~g~~----pv~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDS----PVRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred cEEEEEEEEEcCCCC----ceEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 689999999999864 34431 1222221 11233 55554 222499999999999984
No 50
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=41.61 E-value=25 Score=38.76 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=36.3
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCC--hhhHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLP--GQQMSLVTSVARTSKRPVILVLTGGGPLDVS 574 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp--~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l~ 574 (808)
+..++||+||++.|.+. .+|.+|.+|--- .--.++.+++.+. +++.++++. ++|+++.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEe-cCcHHHH
Confidence 46789999999998653 566677554211 1124556666666 445555544 6799873
No 51
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=41.28 E-value=7.3 Score=37.67 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHH----HHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMS----LVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~----LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++- ....+ +.+++.+. +++.++++. .+|+++
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~-~p~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKY-APDAIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHH-STTSEEEE--SSSHHH
T ss_pred cccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHh-CCccEEEEe-CCcHHH
Confidence 35689999999888542 4555665432 22333 44455555 344444444 679986
No 52
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=40.89 E-value=20 Score=40.75 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhH----HHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQM----SLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..+++|+||++.|... .+|.+|.++- ..-. ++.+++.+.+++..|+++ .++|+|+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~iviV-VsNPvDv 175 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADLL--DINGQIFADQGKALNAVASKNCKVLV-VGNPCNT 175 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEEE-cCCcHHH
Confidence 56789999999988642 3556665432 2223 334445553234555544 4689987
No 53
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=40.82 E-value=21 Score=39.06 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=35.4
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCh--hhHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG--QQMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++..-. --.++.+++.+. +++.++++. ++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~-sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVV-SNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc-cChHHH
Confidence 46789999999998653 3566775443211 123455566666 455665544 689976
No 54
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=40.82 E-value=31 Score=38.06 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=34.1
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh---HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ---MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q---~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++ |+.+- .+..+++.+. +++.++++. .+|+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~-~p~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAES-CPKAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHh-CCCeEEEEe-cCchhh
Confidence 46789999999999643 356666543 22211 3444555565 455554444 679984
No 55
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.51 E-value=23 Score=39.23 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChh--hHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..+++|+||++.|... .+|.+|.++-.-.. -.++.+++.+.+++..++++. ++|+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 56789999999998642 35566654321111 134455555553355665555 689986
No 56
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=39.00 E-value=67 Score=24.96 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=26.2
Q ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHHHhc
Q 003606 366 HTQSAIDKGKVQEKDIDRALLNLFSVQLRLG 396 (808)
Q Consensus 366 ~l~~av~~g~i~~~~id~av~Ril~~k~~~G 396 (808)
..+..++...-+.+.|+.+|..+|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 3445567778889999999999999999987
No 57
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.04 E-value=28 Score=38.37 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=34.0
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..+++|+||++.|... .+|.+|.++- ..- .+.++++.+. ++..++++. .+|+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~-~p~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDLF--NINAGIVRDLATAVAKA-CPKALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEc-cCchhh
Confidence 56789999999999653 3455665431 122 3445556666 455555544 679976
No 58
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.90 E-value=1.3e+02 Score=29.89 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=45.3
Q ss_pred CeEEEEccccccccccCCCcccCCCCcccHHHHHHhhhcceEEe---cCCCCCCCCCcccHHHHHHHh--hcCCEEEEEE
Q 003606 450 SSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKTHYA---SGCHDVPCNSDAGFHEAVRIA--KKADFVIVVA 524 (808)
Q Consensus 450 ~kIaViGp~a~~~~~~~G~~sg~~~~~~t~l~gl~~~~~~v~y~---~g~~~~~~~~~~~~~~a~~~a--~~aD~vIv~v 524 (808)
.+|+++|..... .....+-|++..+.+... .|.- +....++.++.+ .++|+++|.+
T Consensus 49 ~~ifllG~~~~~--------------~~~~~~~l~~~yP~l~ivg~~~g~f-----~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 49 KRIFLLGGSEEV--------------LEKAAANLRRRYPGLRIVGYHHGYF-----DEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred CeEEEEeCCHHH--------------HHHHHHHHHHHCCCeEEEEecCCCC-----ChhhHHHHHHHHHHcCCCEEEEEC
Confidence 589999953321 123344555555543322 2221 223334444443 3578888777
Q ss_pred ecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 525 GLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 525 G~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
|. +.|+.++.+.....+.+ |++..|+.++.
T Consensus 110 G~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~ 139 (172)
T PF03808_consen 110 GA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF 139 (172)
T ss_pred CC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence 73 25778888877663433 33444555544
No 59
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=37.83 E-value=29 Score=38.52 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=33.5
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhH----HHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQM----SLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..+++|+||+..|... .++.+|.++- ..-. ++++++.+.+++..|+++. ++|+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~ll--~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDLL--SKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 46789999999998643 2444554321 2222 3445555552355666655 579987
No 60
>PLN02602 lactate dehydrogenase
Probab=37.66 E-value=26 Score=39.36 Aligned_cols=57 Identities=25% Similarity=0.429 Sum_probs=34.5
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh--HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ--MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++-.-..+ .++++++.+. +.+.++++. .+|+++
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivv-tNPvdv 159 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIV-SNPVDV 159 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCchHH
Confidence 34789999999998643 356667544221111 2445556565 455665555 579976
No 61
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=36.69 E-value=4.8e+02 Score=30.28 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=30.4
Q ss_pred HHHcCCcceEEeecCccCC-----cccccCHHHHHH-HHhhcCCCeEEEcchh
Q 003606 282 CIEQGKASCIMCSYNQVNG-----VPACLRGDLFQK-ARNEWGFKGYITSDCD 328 (808)
Q Consensus 282 ~i~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~-LR~e~gf~G~VvSD~~ 328 (808)
.|+++.+ ..|.+-+.+.| ..++-++.+++. |..=+.+ |.-..+-+
T Consensus 50 ~iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R~A~pG 100 (442)
T TIGR00450 50 CKDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GARLAQPG 100 (442)
T ss_pred EeeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCeEcCCc
Confidence 3556655 88999888877 478899998888 6644332 54444444
No 62
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=36.42 E-value=26 Score=38.46 Aligned_cols=55 Identities=27% Similarity=0.481 Sum_probs=34.3
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++- ..- .++++++.+. +++.++++. ++|+++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dll--~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLELV--GRNVRIMKSIVPEVVKS-GFDGIFLVA-TNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEe-CCHHHH
Confidence 46789999999998643 3566775431 222 3445566665 555665544 679876
No 63
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.46 E-value=1.5e+02 Score=32.51 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=56.5
Q ss_pred CcccCcCCCCCeEEEEccccccccccCCCcccCCCCcccHHHHHHhhhcc--eEEecCCCCCCCCCcccHHHHHHHhh--
Q 003606 440 KFLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSK--THYASGCHDVPCNSDAGFHEAVRIAK-- 515 (808)
Q Consensus 440 ~~LPL~~~~~~kIaViGp~a~~~~~~~G~~sg~~~~~~t~l~gl~~~~~~--v~y~~g~~~~~~~~~~~~~~a~~~a~-- 515 (808)
.-||.-+ ++|+||.+-.... +..++..++.+.+. +.+.+ +..-+......+-+|.+.+.
T Consensus 8 ~~lP~~p---~~I~vITs~~gAa-------------~~D~~~~~~~r~~~~~~~~~p-~~vQG~~A~~~I~~al~~~~~~ 70 (319)
T PF02601_consen 8 KPLPKFP---KRIAVITSPTGAA-------------IQDFLRTLKRRNPIVEIILYP-ASVQGEGAAASIVSALRKANEM 70 (319)
T ss_pred CCCCCCC---CEEEEEeCCchHH-------------HHHHHHHHHHhCCCcEEEEEe-ccccccchHHHHHHHHHHHHhc
Confidence 4456544 6999997432111 23455556665542 22111 11111122344555655553
Q ss_pred ----cCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCcccccc
Q 003606 516 ----KADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDVSF 575 (808)
Q Consensus 516 ----~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l~~ 575 (808)
..|++|++=|. +...+|. +=+...+++++++. ..|||.= .|.=.|.+-
T Consensus 71 ~~~~~~Dviii~RGG--------Gs~eDL~-~FN~e~varai~~~-~~Pvisa--IGHe~D~ti 122 (319)
T PF02601_consen 71 GQADDFDVIIIIRGG--------GSIEDLW-AFNDEEVARAIAAS-PIPVISA--IGHETDFTI 122 (319)
T ss_pred cccccccEEEEecCC--------CChHHhc-ccChHHHHHHHHhC-CCCEEEe--cCCCCCchH
Confidence 46888876552 2222332 33678899999887 7886643 365555543
No 64
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=33.39 E-value=47 Score=36.56 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCh--hhHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG--QQMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+.+++||+||+++|.+. .++.+|.++-.-. --.+.++++.+. ++..++++. ++|+++
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~-~~~~~viv~-~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEF-APDTKILVV-TNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-CCchHH
Confidence 34789999999998653 3455554321000 113344455555 344454444 579876
No 65
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=32.67 E-value=38 Score=37.23 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=31.3
Q ss_pred hhcCCEEEEEEecCCCCccccCCCCCCCCChhhHH----HHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 514 AKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMS----LVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 514 a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~----LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
++.+|+||+++|.+. .++.+|.++ -....+ .++++.+. +++.++++. .+|+++
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~l--~~~N~~iv~~i~~~I~~~-~p~~~iIv~-tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSREDL--LSMNAGIVREVTGRIMEH-SPNPIIVVV-SNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCcHHH
Confidence 588999999999653 234445332 222333 44455555 445555444 669887
No 66
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.61 E-value=1.4e+02 Score=29.79 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=25.7
Q ss_pred hcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 515 KKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 515 ~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
..+|+|+|.+|. +.|+.++.+..+.. +.-|++..|+.++.
T Consensus 98 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~l--~~~v~~~vG~~~d~ 137 (171)
T cd06533 98 SGADILFVGLGA-----------------PKQELWIARHKDRL--PVPVAIGVGGSFDF 137 (171)
T ss_pred cCCCEEEEECCC-----------------CHHHHHHHHHHHHC--CCCEEEEeceeeEe
Confidence 458999998874 25888998887773 23333344555543
No 67
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=32.00 E-value=1.5e+02 Score=24.33 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHhhc-CCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhC-CCCEEEEEe
Q 003606 510 AVRIAKK-ADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTS-KRPVILVLT 566 (808)
Q Consensus 510 a~~~a~~-aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~-~kpvVVVl~ 566 (808)
|+.+.+. +++|++++-.. ..+ |. -.++|..|.+++.... ++|+|+|++
T Consensus 6 ai~AL~hL~~~ilfi~D~S-e~C--Gy------sie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPS-EQC--GY------SIEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT--TT--SS-------HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHhhcceEEEEEcCC-CCC--CC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3444444 57777766321 111 22 1468999999998885 689999876
No 68
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=31.91 E-value=73 Score=37.45 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=35.2
Q ss_pred HHhhcCCCeEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCccCC
Q 003606 313 ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCG 360 (808)
Q Consensus 313 LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~ 360 (808)
|++=+||+|.|+||.++.+... ......++++.+.---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s-~g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLV-YGDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEE-cCCccCCHHHHHHHHHHhCCCEEeE
Confidence 9999999999999999865432 2224567877666555679999874
No 69
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.41 E-value=44 Score=37.12 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=32.8
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh--HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ--MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..+++|+||++.|... .++.+|.++.-.... .++.+.+.+.+++..++++. ++|+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 55689999999998643 234555432211111 33445555553345665555 579976
No 70
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=31.41 E-value=44 Score=30.86 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=32.5
Q ss_pred ceecccccCCCCccccc--ccCccccccccccccCCCcccccccCCCCcccccccccccccceEE-EEEEEEeCCCCCcc
Q 003606 653 VYGFGHGLSYTNYSYKF--LSAPSELTISASLKAGSDKNILQQTGSRLDYVHIDEVTSCTSLRFH-VQISVTNAGDVDGS 729 (808)
Q Consensus 653 lypFGyGLSYTtF~ys~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vsv~VtNtG~~~G~ 729 (808)
.|-.-||+.||.|.... +..+..+.|+ . . +.++ ..++|+|+|+..=.
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~~~~~v~V~---------------------~----~-----~~vEi~~l~l~N~~~~~r~ 80 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIETELTVFVP---------------------P----D-----DPVEIRRLRLTNTSNRPRR 80 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEEEEEEEE-----------------------T----T-----SSEEEEEEEEEE-SSS-EE
T ss_pred cEEEEECCCeEEEEEEeCCEEEEEEEEEc---------------------C----C-----CCEEEEEEEEEECcCCcEE
Confidence 58889999999997654 3322222222 0 1 1233 58999999988766
Q ss_pred eeEEEEEec
Q 003606 730 HVVMLFARV 738 (808)
Q Consensus 730 eVvQlYv~~ 738 (808)
=-+=-|+..
T Consensus 81 L~vtsy~E~ 89 (110)
T PF06165_consen 81 LSVTSYAEW 89 (110)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 555555543
No 71
>PRK05086 malate dehydrogenase; Provisional
Probab=31.19 E-value=44 Score=36.82 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCCh---hhHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG---QQMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~---~q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+.++++|+||+++|... .++.+|.++ |.. .-.++++++.+. +.+.+|+ +..+|+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~-~~~~ivi-vvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKT-CPKACIG-IITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHh-CCCeEEE-EccCchHH
Confidence 45578999999999643 234455443 122 234566677776 4445544 44679964
No 72
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.04 E-value=3.9e+02 Score=29.31 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCeEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCccCCccc-hHHHHHHHH
Q 003606 309 LFQKARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCGTCM-LRHTQSAID 372 (808)
Q Consensus 309 ll~~LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~~~~-~~~l~~av~ 372 (808)
.+..+|....|.--|.--. .+. |-+.+|+.+|.|++|-..+ .+.+.++++
T Consensus 186 av~~~r~~~~~~~kIeVEv-------------~tl-eea~~a~~agaDiImLDnmspe~l~~av~ 236 (290)
T PRK06559 186 AIAQARAYAPFVKMVEVEV-------------ESL-AAAEEAAAAGADIIMLDNMSLEQIEQAIT 236 (290)
T ss_pred HHHHHHHhCCCCCeEEEEC-------------CCH-HHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 3444777777643222222 233 3367899999999986443 345555554
No 73
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=30.86 E-value=2.8e+02 Score=23.86 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=44.7
Q ss_pred eEEEEEEEEe--CCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEcCCCCEEecCe
Q 003606 713 RFHVQISVTN--AGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANKHGRRILPLG 790 (808)
Q Consensus 713 ~~~vsv~VtN--tG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 790 (808)
.+++++.+-| +.=..|.. .++|++...... -.+.+. .-.|.||++..|+|.+.. +.+ +.+..|++++..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~-~~l~~~t~~~~~--~i~~i~---~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQ-ATVHIGSIRQTA--RIVSID---KDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCCE-eEEEEcCCEEEE--EEEecc---HhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC
Confidence 4666666666 22334444 556666443211 011111 246899999999999643 345 4455677778777
Q ss_pred eEEEEEe
Q 003606 791 NHVLMVG 797 (808)
Q Consensus 791 ~y~i~vG 797 (808)
.++-+|
T Consensus 77 -~tva~G 82 (87)
T cd03708 77 -RTKGVG 82 (87)
T ss_pred -CcEEEE
Confidence 566666
No 74
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=30.77 E-value=41 Score=37.10 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=33.1
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+|.++- ..- .++++++.+. +.+.++++. ++|.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dll--~~N~~i~~~i~~~i~~~-~~~~~vivv-sNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDLV--EKNLKIFKSIVGEVMAS-GFDGIFLVA-SNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEc-cCcHHH
Confidence 45689999999998643 3566665431 122 2345555555 444554444 689876
No 75
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.36 E-value=1.8e+02 Score=29.56 Aligned_cols=84 Identities=17% Similarity=0.054 Sum_probs=49.0
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEE-ecCCCCCCCchhhhccc--ccc-ccCCCCEEEEEEEeCCCCCceeEcCCCC---
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFA-RVPKVSQGTPEKQLIGF--DRV-HTVAKGSKEISFGVDPCEQLSIANKHGR--- 784 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv-~~~~~~~~~P~k~L~gF--~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~--- 784 (808)
..++|+++|.|.|+-+-..|. |.= +.|...- .-..|- .+. .|+||++.+-++.|.+. ...+++-...
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~-l~D~~fp~~~F----~lvsG~~s~~~~~i~pg~~vsh~~vv~p~-~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVK-LTDDSFPPEDF----ELVSGSLSASWERIPPGENVSHSYVVRPK-KSGYFNFTPAVVT 111 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEE-EECCCCCcccc----EeccCceEEEEEEECCCCeEEEEEEEeee-eeEEEEccCEEEE
Confidence 579999999999987665543 332 2221110 111221 122 59999999999999984 4666665433
Q ss_pred EEecCeeEEEEEecCCc
Q 003606 785 RILPLGNHVLMVGELRH 801 (808)
Q Consensus 785 ~~~~~G~y~i~vG~~s~ 801 (808)
+..+.|.=.+.++.++.
T Consensus 112 Y~~~~~~~~~~~a~Ss~ 128 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSSP 128 (181)
T ss_pred EECCCCCceeEEEEecC
Confidence 23344444455554443
No 76
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=30.00 E-value=41 Score=36.83 Aligned_cols=54 Identities=28% Similarity=0.440 Sum_probs=32.5
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 513 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 513 ~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
.++++|++|++.|... .+|.+|.++- ..- .++.+++.+. +...++++. ++|+++
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dll--~~N~~i~~~~~~~i~~~-~~~~~vivv-sNP~d~ 122 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDLL--EKNAKIMKSIVPKIKAS-GFDGIFLVA-SNPVDV 122 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHh-CCCeEEEEe-cChHHH
Confidence 4689999999998643 3566665431 222 2344455555 445554444 689976
No 77
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=29.64 E-value=2.2e+02 Score=28.49 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=24.2
Q ss_pred cCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEE
Q 003606 516 KADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILV 564 (808)
Q Consensus 516 ~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVV 564 (808)
+.|+||+.+|.+.... +.+.. .+-.+..++|+.+.+. +..+|++
T Consensus 71 ~pd~Vii~~GtND~~~--~~~~~--~~~~~l~~li~~~~~~-~~~~ill 114 (191)
T PRK10528 71 QPRWVLVELGGNDGLR--GFPPQ--QTEQTLRQIIQDVKAA-NAQPLLM 114 (191)
T ss_pred CCCEEEEEeccCcCcc--CCCHH--HHHHHHHHHHHHHHHc-CCCEEEE
Confidence 6799999999764321 11110 0112345677777665 5554443
No 78
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.49 E-value=3.1e+02 Score=29.83 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCccCCccc-hHHHHHHHH
Q 003606 346 SAAGVLKAGMDINCGTCM-LRHTQSAID 372 (808)
Q Consensus 346 a~~~al~AG~D~~~~~~~-~~~l~~av~ 372 (808)
.+.+|+++|.|++|-..+ .+.+.++|+
T Consensus 205 e~~ea~~~gaDiImLDn~s~e~l~~av~ 232 (281)
T PRK06543 205 QIEPVLAAGVDTIMLDNFSLDDLREGVE 232 (281)
T ss_pred HHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 356789999999986443 344555444
No 79
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=29.17 E-value=3.1e+02 Score=29.83 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCCccCCccchHHHHHHHHcCCccHHHHHHHHHHH
Q 003606 345 DSAAGVLKAGMDINCGTCMLRHTQSAIDKGKVQEKDIDRALLNL 388 (808)
Q Consensus 345 ~a~~~al~AG~D~~~~~~~~~~l~~av~~g~i~~~~id~av~Ri 388 (808)
|.+.+++++|.|++|-. ..+.+.+.++++++
T Consensus 199 eea~ea~~~GaDiI~lD-------------n~~~e~l~~~v~~l 229 (277)
T TIGR01334 199 EQALTVLQASPDILQLD-------------KFTPQQLHHLHERL 229 (277)
T ss_pred HHHHHHHHcCcCEEEEC-------------CCCHHHHHHHHHHH
Confidence 44678999999999854 34455666666544
No 80
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=29.10 E-value=2.1e+02 Score=27.52 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=40.4
Q ss_pred ceEEEEEEEEeCCCCCcce-eEEEEEecCCCC-----CCCchhhhccc--cccccCCCCEEEEEEEeC
Q 003606 712 LRFHVQISVTNAGDVDGSH-VVMLFARVPKVS-----QGTPEKQLIGF--DRVHTVAKGSKEISFGVD 771 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~e-VvQlYv~~~~~~-----~~~P~k~L~gF--~kv~L~pGes~~V~~~l~ 771 (808)
+.+.|+.+++|+++.+=.- .+++-+.+.... .-.|..-|..- .+..|+||++.++++.+.
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~ 135 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLE 135 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEee
Confidence 6799999999999865433 455555555442 22454444433 244599999999999887
No 81
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.44 E-value=39 Score=37.28 Aligned_cols=54 Identities=22% Similarity=0.457 Sum_probs=33.2
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 513 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 513 ~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
..++||+||++.|.... +|.+|.++ -..- .++++++.+. +.+.++++. ++|+++
T Consensus 68 ~~~~adivvitaG~~~k---~g~~R~dl--l~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~ 125 (312)
T cd05293 68 VTANSKVVIVTAGARQN---EGESRLDL--VQRNVDIFKGIIPKLVKY-SPNAILLVV-SNPVDI 125 (312)
T ss_pred HhCCCCEEEECCCCCCC---CCCCHHHH--HHHHHHHHHHHHHHHHHh-CCCcEEEEc-cChHHH
Confidence 47899999999986532 45666443 1222 3445556666 455555544 579976
No 82
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.09 E-value=47 Score=36.54 Aligned_cols=55 Identities=18% Similarity=0.476 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEecCCCCccccCC--CCCCCCChhhH----HHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRD--RVSLLLPGQQM----SLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~D--r~~l~Lp~~q~----~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
+..++||+||++.|... .+|.+ |.++ -..-. ++++++.+. +.+.++++. .+|+|+
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dl--l~~N~~I~~~i~~~i~~~-~p~~i~ivv-sNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDL--AQTNAKIIREIMGNITKV-TKEAVIILI-TNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHH--HHHHHHHHHHHHHHHHHh-CCCeEEEEe-cCcHHH
Confidence 56789999999998643 23444 3332 22233 344555555 455555444 679987
No 83
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=28.04 E-value=1.2e+02 Score=33.87 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=32.3
Q ss_pred ceEEEEEEEEeCCCCCcceeEEE------EEecCCC------CCCCchhhhcc--cc---ccccCCCCEEEEEEEeC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVML------FARVPKV------SQGTPEKQLIG--FD---RVHTVAKGSKEISFGVD 771 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQl------Yv~~~~~------~~~~P~k~L~g--F~---kv~L~pGes~~V~~~l~ 771 (808)
..++++++|||.|+-+ |.| =++..++ ...-|. +|.+ -. ...|+|||+++|+++..
T Consensus 282 R~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 282 RALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred cEEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 5799999999998643 222 0111111 112333 3322 21 22499999999999875
No 84
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=27.95 E-value=1.8e+02 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=17.4
Q ss_pred hcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHh
Q 003606 515 KKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVART 556 (808)
Q Consensus 515 ~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~ 556 (808)
..+|+++|.+|. +.|+.++.+....
T Consensus 99 s~~dil~VglG~-----------------PkQE~~~~~~~~~ 123 (177)
T TIGR00696 99 SGAGIVFVGLGC-----------------PKQEIWMRNHRHL 123 (177)
T ss_pred cCCCEEEEEcCC-----------------cHhHHHHHHhHHh
Confidence 457888888773 2577788777555
No 85
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=27.20 E-value=40 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=17.5
Q ss_pred CchhhhccccccccCCCCEEEEEEEeCC
Q 003606 745 TPEKQLIGFDRVHTVAKGSKEISFGVDP 772 (808)
Q Consensus 745 ~P~k~L~gF~kv~L~pGes~~V~~~l~~ 772 (808)
.|.-.|+ .+|.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 4655555 3788999999999998754
No 86
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=26.11 E-value=2.9e+02 Score=30.19 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCCccCCccchHHHHHHHHcCCccHHHHHHHHH
Q 003606 345 DSAAGVLKAGMDINCGTCMLRHTQSAIDKGKVQEKDIDRALL 386 (808)
Q Consensus 345 ~a~~~al~AG~D~~~~~~~~~~l~~av~~g~i~~~~id~av~ 386 (808)
|-+.+|+++|.|++|-.. .+.+.+.+++.
T Consensus 200 eqa~ea~~agaDiI~LDn-------------~~~e~l~~av~ 228 (284)
T PRK06096 200 KEAIAALRAQPDVLQLDK-------------FSPQQATEIAQ 228 (284)
T ss_pred HHHHHHHHcCCCEEEECC-------------CCHHHHHHHHH
Confidence 346789999999998643 34566666665
No 87
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=25.72 E-value=87 Score=24.91 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.0
Q ss_pred ceEEEEEEEEeCCCCCcce
Q 003606 712 LRFHVQISVTNAGDVDGSH 730 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~e 730 (808)
+.++.+++|+|+|......
T Consensus 12 d~v~Yti~v~N~g~~~a~~ 30 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATN 30 (53)
T ss_pred CEEEEEEEEEECCCCceEe
Confidence 6899999999999876543
No 88
>PLN00106 malate dehydrogenase
Probab=24.99 E-value=73 Score=35.37 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=34.1
Q ss_pred HHHhhcCCEEEEEEecCCCCccccCCCCCCCCChh---hHHHHHHHHHhCCCCEEEEEeCCCccc
Q 003606 511 VRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ---QMSLVTSVARTSKRPVILVLTGGGPLD 572 (808)
Q Consensus 511 ~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~---q~~LI~~v~~~~~kpvVVVl~~g~P~~ 572 (808)
.+..+++|+||++.|... .++.+|.++ |+.+ =.++++++.+. +.+.||++. .+|++
T Consensus 81 ~~~l~~aDiVVitAG~~~---~~g~~R~dl-l~~N~~i~~~i~~~i~~~-~p~aivivv-SNPvD 139 (323)
T PLN00106 81 GDALKGADLVIIPAGVPR---KPGMTRDDL-FNINAGIVKTLCEAVAKH-CPNALVNII-SNPVN 139 (323)
T ss_pred HHHcCCCCEEEEeCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEEEe-CCCcc
Confidence 456789999999998643 234555433 2221 13455666666 555555544 67997
No 89
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=24.96 E-value=1.4e+02 Score=29.52 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=28.5
Q ss_pred hcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEe
Q 003606 515 KKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 566 (808)
Q Consensus 515 ~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~ 566 (808)
.+.|++|+++-.. + .+....|..++.+. ++|+|+|++
T Consensus 77 ~~~D~ii~VvDa~-----------~---l~r~l~l~~ql~e~-g~P~vvvlN 113 (156)
T PF02421_consen 77 EKPDLIIVVVDAT-----------N---LERNLYLTLQLLEL-GIPVVVVLN 113 (156)
T ss_dssp TSSSEEEEEEEGG-----------G---HHHHHHHHHHHHHT-TSSEEEEEE
T ss_pred cCCCEEEEECCCC-----------C---HHHHHHHHHHHHHc-CCCEEEEEe
Confidence 5799999988421 1 23456788899888 899999998
No 90
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=24.91 E-value=1.8e+02 Score=30.50 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=32.9
Q ss_pred EEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhcccc-ccccCCCCEEEEEEEeC
Q 003606 715 HVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFD-RVHTVAKGSKEISFGVD 771 (808)
Q Consensus 715 ~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~-kv~L~pGes~~V~~~l~ 771 (808)
.++++|+|+|+. .-.+|..+.+..... ...+.-.= -..|+||+++.|.+-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~---~~~fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDK---SKLLLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCC---CCCEEEcCCeEEECCCCceEEEEEEC
Confidence 478889999975 478888886543221 11111111 23589999999987643
No 91
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.74 E-value=82 Score=26.62 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=16.5
Q ss_pred ceEEEEEEEEeCCCCCcce
Q 003606 712 LRFHVQISVTNAGDVDGSH 730 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~e 730 (808)
+.++.+++|+|+|...-..
T Consensus 41 d~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CEEEEEEEEEECCCCeeEe
Confidence 6899999999999888555
No 92
>PLN02303 urease
Probab=24.53 E-value=84 Score=39.08 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCCCC----CCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKVSQ----GTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~----~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
=+++++|+|||+|+ +|+=-+..-..+ .--...=.|| .-|..+|||+++|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 35899999999987 666332211111 1111111222 2467899999999985
No 93
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=24.47 E-value=93 Score=28.13 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=33.7
Q ss_pred cceEEEEEEEEeCCCCC------------cceeEEEEEecCCCCCCCchhhhcccccc-ccCCCCEEEEEEEeCC
Q 003606 711 SLRFHVQISVTNAGDVD------------GSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVDP 772 (808)
Q Consensus 711 ~~~~~vsv~VtNtG~~~------------G~eVvQlYv~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 772 (808)
++.++..|+|+|+|+.+ |.++.+++-.....+ ... -.+++-.=- .|+||++.++.|....
T Consensus 12 ~~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~-g~~-~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 12 GGGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQS-GNT-VTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SSEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEE-TTE-EEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEec-CCE-EEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 35688999999999865 333333331111001 111 133322222 5888999888887764
No 94
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=24.31 E-value=1.1e+02 Score=27.96 Aligned_cols=61 Identities=11% Similarity=-0.063 Sum_probs=29.5
Q ss_pred ceEEEEEEEEeCCCCCcce-eEEEEEecCCCCCCCchhhhcc----ccccccCCCCEEEEEEEeCC
Q 003606 712 LRFHVQISVTNAGDVDGSH-VVMLFARVPKVSQGTPEKQLIG----FDRVHTVAKGSKEISFGVDP 772 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~e-VvQlYv~~~~~~~~~P~k~L~g----F~kv~L~pGes~~V~~~l~~ 772 (808)
..+.|.|+|+|+|+-+-.- ..+..+.+.....-.+....-. +--..|+||++.+..+-+..
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 5789999999998754432 1234444444332222221111 34457999999987765543
No 95
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=24.05 E-value=97 Score=35.23 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCCEEEEEeC-CCccccccccc-------ccCccEEEEecCCChhhHHHHHHHHhCCC
Q 003606 547 MSLVTSVARTSKRPVILVLTG-GGPLDVSFAEA-------DSQISSILWIGYPGEAGAKALAEIIFGDF 607 (808)
Q Consensus 547 ~~LI~~v~~~~~kpvVVVl~~-g~P~~l~~~~~-------~~~v~AIL~a~~pG~e~g~AiAdVL~G~~ 607 (808)
.++|+++.+.+++||++|.+| |+++...++.. ...|+++|...-|=.-+.+|+..+++|+.
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~~ 175 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGDN 175 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhhh
Confidence 456777766668899999987 55655432221 14688888877665556789999999983
No 96
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=23.88 E-value=1.7e+02 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=14.6
Q ss_pred HHHHHHhhcCCEEEEEEe
Q 003606 508 HEAVRIAKKADFVIVVAG 525 (808)
Q Consensus 508 ~~a~~~a~~aD~vIv~vG 525 (808)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999999884
No 97
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=23.34 E-value=1.2e+02 Score=32.16 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=53.0
Q ss_pred hHHHHHHcCCcceEEeecCccCCcccccCHHHHHHHHhhcCCCeEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCc
Q 003606 278 PFRSCIEQGKASCIMCSYNQVNGVPACLRGDLFQKARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDI 357 (808)
Q Consensus 278 PF~~~i~~g~~~~vM~sy~~vng~pa~~s~~ll~~LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~ 357 (808)
-.+++.+.|+. +||+--.-|.-----.|++.|..+|++. +=-||-|.+- .++.+ ++.|++-|+|=
T Consensus 136 ~akrL~d~Gca-avMPlgsPIGSg~Gi~n~~~l~~i~~~~--~vPvIvDAGi-----------G~pSd-aa~AMElG~da 200 (247)
T PF05690_consen 136 LAKRLEDAGCA-AVMPLGSPIGSGRGIQNPYNLRIIIERA--DVPVIVDAGI-----------GTPSD-AAQAMELGADA 200 (247)
T ss_dssp HHHHHHHTT-S-EBEEBSSSTTT---SSTHHHHHHHHHHG--SSSBEEES--------------SHHH-HHHHHHTT-SE
T ss_pred HHHHHHHCCCC-EEEecccccccCcCCCCHHHHHHHHHhc--CCcEEEeCCC-----------CCHHH-HHHHHHcCCce
Confidence 45678888987 9999777774222345788887788887 5567778751 23334 56799999998
Q ss_pred cCCc----------cchHHHHHHHHcCC
Q 003606 358 NCGT----------CMLRHTQSAIDKGK 375 (808)
Q Consensus 358 ~~~~----------~~~~~l~~av~~g~ 375 (808)
++.. .+...+..||+.|+
T Consensus 201 VLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 201 VLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred eehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 8742 23456666776664
No 98
>PHA00691 hypothetical protein
Probab=23.12 E-value=81 Score=25.55 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.1
Q ss_pred CCCC-EEec-CeeEEEEEecCCce
Q 003606 781 KHGR-RILP-LGNHVLMVGELRHS 802 (808)
Q Consensus 781 ~~~~-~~~~-~G~y~i~vG~~s~~ 802 (808)
++|+ |+++ .|.|+++|....|+
T Consensus 11 ENGr~WVL~K~~~Y~V~vSG~THS 34 (68)
T PHA00691 11 ENGRVWVLKKSDSYTVFVSGVTHS 34 (68)
T ss_pred cCCeEEEEEeCCcEEEEEeccccc
Confidence 4555 7887 89999999986664
No 99
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=22.96 E-value=2.8e+02 Score=24.94 Aligned_cols=58 Identities=7% Similarity=-0.039 Sum_probs=40.7
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVD 771 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~ 771 (808)
+..++++.|+|+.+.+-.=-=.+|==+..+=...|. ...++.+.|.++|+.+|+..-+
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap 89 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAP 89 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcC
Confidence 578999999999875544434444445544322333 5788999999999999887655
No 100
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.67 E-value=60 Score=37.72 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEEecCCCCccccCCCCCCCCChhh----HHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003606 512 RIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQ----MSLVTSVARTSKRPVILVLTGGGPLDVS 574 (808)
Q Consensus 512 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~LI~~v~~~~~kpvVVVl~~g~P~~l~ 574 (808)
+..++||+||++.|... .+|.+|.++- ..- .+..++|.+.+++.+=|+++..+|+++.
T Consensus 195 ea~~daDvvIitag~pr---k~G~~R~DLL--~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~ 256 (452)
T cd05295 195 VAFKDAHVIVLLDDFLI---KEGEDLEGCI--RSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLK 256 (452)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHH
Confidence 56789999999888542 4566775532 111 2334444444331122233334798763
No 101
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=22.40 E-value=2.4e+02 Score=25.18 Aligned_cols=59 Identities=8% Similarity=-0.036 Sum_probs=34.4
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeCC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDP 772 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 772 (808)
+..+++++++|+.+.+-.=--.+|==+..+-...|. ...++++.|.++|+.+|+..-+-
T Consensus 24 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 24 GLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 688999999999877765555555555554322232 25789999999999999886653
No 102
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=22.37 E-value=78 Score=28.83 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=26.8
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCC----CCCCchhhhccc-------cccccCCCCEEEEEEE
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKV----SQGTPEKQLIGF-------DRVHTVAKGSKEISFG 769 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~----~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 769 (808)
+.=+++++|+|||+++ +|+=-+..-. ...-....=.|+ .-|..+|||+++|++.
T Consensus 17 gr~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 3457899999999987 6663221111 111111111122 2456889999999873
No 103
>PTZ00117 malate dehydrogenase; Provisional
Probab=22.28 E-value=67 Score=35.52 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=34.5
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCChh--hHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003606 513 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ--QMSLVTSVARTSKRPVILVLTGGGPLDVS 574 (808)
Q Consensus 513 ~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~--q~~LI~~v~~~~~kpvVVVl~~g~P~~l~ 574 (808)
.+++||+||+++|.. ..++.+|.++--+.. -.++.+++.+. +++.++++. .+|+++.
T Consensus 70 ~l~~ADiVVitag~~---~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivv-sNP~di~ 128 (319)
T PTZ00117 70 DIKDSDVVVITAGVQ---RKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICV-TNPLDCM 128 (319)
T ss_pred HhCCCCEEEECCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe-cChHHHH
Confidence 568999999998753 234555644322111 24566666666 455655554 5698763
No 104
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=22.19 E-value=2.6e+02 Score=29.94 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCEEEEEEecC
Q 003606 507 FHEAVRIAKKADFVIVVAGLD 527 (808)
Q Consensus 507 ~~~a~~~a~~aD~vIv~vG~~ 527 (808)
+++..+.+++||++|+.+|..
T Consensus 92 l~~~~~~l~~ad~~iiTLGta 112 (251)
T PF08885_consen 92 LEEVREALEEADVFIITLGTA 112 (251)
T ss_pred HHHHHHHHHhCCEEEEeCCcH
Confidence 456677889999999999964
No 105
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=22.17 E-value=2.5e+02 Score=32.52 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=37.7
Q ss_pred HHhh-cCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCccc
Q 003606 512 RIAK-KADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLD 572 (808)
Q Consensus 512 ~~a~-~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~ 572 (808)
+.+. .+|+.||++. +.+. -+..|.+ .-..+.++|+++.+. +||.|+|+++..|+.
T Consensus 139 kVI~dhstIgivVtT-Dgsi--~dI~Re~--y~~aEe~~i~eLk~~-~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 139 KVIQEHSTIGVVVTT-DGTI--TDIPRED--YVEAEERVIEELKEL-NKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHhcCcEEEEEEc-CCCc--ccccccc--chHHHHHHHHHHHhc-CCCEEEEEECcCCCC
Confidence 3455 7999998873 2111 0122332 245678899999988 899999999998874
No 106
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.07 E-value=1.7e+02 Score=20.70 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCccHHHHHHHHHHHH
Q 003606 365 RHTQSAIDKGKVQEKDIDRALLNLF 389 (808)
Q Consensus 365 ~~l~~av~~g~i~~~~id~av~Ril 389 (808)
..|.+..++|.|+++...+.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5678889999999999999998887
No 107
>PRK13556 azoreductase; Provisional
Probab=21.91 E-value=2.2e+02 Score=29.08 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHh
Q 003606 507 FHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVART 556 (808)
Q Consensus 507 ~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~ 556 (808)
.++..+..+.||.+|++.= .+ ++..|..=..+|+.+...
T Consensus 80 ~~~~~~~l~~AD~iVi~~P--~y---------n~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFP--LW---------NFTIPAVLHTYIDYLNRA 118 (208)
T ss_pred HHHHHHHHHHCCEEEEecc--cc---------ccCCcHHHHHHHHHHhcC
Confidence 3445577889999998652 11 456777667788888754
No 108
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=21.77 E-value=3e+02 Score=27.33 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEe
Q 003606 507 FHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 566 (808)
Q Consensus 507 ~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~ 566 (808)
..+....++.+|.+|+++... +| +.....+.++.+... +.|+|||++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~~~~-~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKILREL-GIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHHHHT-T-SEEEEEE
T ss_pred eecccceecccccceeeeecc-----cc-------ccccccccccccccc-ccceEEeee
Confidence 455666788999999999632 12 233446677777666 789888887
No 109
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=21.72 E-value=1.2e+03 Score=26.32 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhhhccCCCcccCcCCCCCeEEEEc-cccccccccCCCcccCCCCcccHHHHHHhhhcceEEecCCCC
Q 003606 420 HKKLALDAARQGIVLLKNDKKFLPLNKNAVSSLAIIG-PLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKTHYASGCHD 498 (808)
Q Consensus 420 h~~lA~eaA~eSiVLLKN~~~~LPL~~~~~~kIaViG-p~a~~~~~~~G~~sg~~~~~~t~l~gl~~~~~~v~y~~g~~~ 498 (808)
-+.+-+.+-.+|+- ++.+.++-++.+. .++|+||| ... .| .++...|++....+... +.+
T Consensus 71 ~~~i~~~i~~~s~~-~q~~~~~~~~~~~-~~~I~IiGG~Gl------mG---------~slA~~l~~~G~~V~~~-d~~- 131 (374)
T PRK11199 71 IEDVLRRVMRESYS-SENDKGFKTLNPD-LRPVVIVGGKGQ------LG---------RLFAKMLTLSGYQVRIL-EQD- 131 (374)
T ss_pred HHHHHHHHHHHHHH-HhHHhcccccCcc-cceEEEEcCCCh------hh---------HHHHHHHHHCCCeEEEe-CCC-
Confidence 45566777777764 4445456566653 47999998 321 11 13444555432222111 110
Q ss_pred CCCCCcccHHHHHHHhhcCCEEEEEEe
Q 003606 499 VPCNSDAGFHEAVRIAKKADFVIVVAG 525 (808)
Q Consensus 499 ~~~~~~~~~~~a~~~a~~aD~vIv~vG 525 (808)
......+.++++|+||+++-
T Consensus 132 -------~~~~~~~~~~~aDlVilavP 151 (374)
T PRK11199 132 -------DWDRAEDILADAGMVIVSVP 151 (374)
T ss_pred -------cchhHHHHHhcCCEEEEeCc
Confidence 11233456778999999873
No 110
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=21.68 E-value=1.7e+02 Score=26.44 Aligned_cols=46 Identities=22% Similarity=0.415 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEe
Q 003606 507 FHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLT 566 (808)
Q Consensus 507 ~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~ 566 (808)
+..+.+.++.+|++|+++-.+. .+.....++++.+. . ++|+++|++
T Consensus 70 ~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~-~-~~~~i~v~N 115 (116)
T PF01926_consen 70 IRKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK-N-KKPIILVLN 115 (116)
T ss_dssp HHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH-T-TSEEEEEEE
T ss_pred HHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh-c-CCCEEEEEc
Confidence 3346666788999999985321 11234567888885 4 789999875
No 111
>PTZ00325 malate dehydrogenase; Provisional
Probab=21.59 E-value=78 Score=35.11 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=34.7
Q ss_pred HHHhhcCCEEEEEEecCCCCccccCCCCCCCCCh---hhHHHHHHHHHhCCCCEEEEEeCCCcccc
Q 003606 511 VRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPG---QQMSLVTSVARTSKRPVILVLTGGGPLDV 573 (808)
Q Consensus 511 ~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~---~q~~LI~~v~~~~~kpvVVVl~~g~P~~l 573 (808)
.+..+++|+||+++|... .++.+|.++ |.. .-.++++++.+. +.+-||++ +.+|++.
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~-~~~~iviv-~SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASS-APKAIVGI-VSNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEEE-ecCcHHH
Confidence 356789999999998643 234455443 222 234566677776 54455444 4668876
No 112
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=21.50 E-value=3e+02 Score=24.05 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=40.9
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhccccccccCCCCEEEEEEEeCCCCCceeEcC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRVHTVAKGSKEISFGVDPCEQLSIANK 781 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~ 781 (808)
..++|.+++.|.+....+-.+++.+.......... .-..+.+..++...+.++++. .....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVT-----QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEE-----EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEE-----eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 46777778899999999889999988775543111 223334666666665444444 24677876
No 113
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=21.28 E-value=1.2e+02 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.8
Q ss_pred hhhccccccccCCCCEEEEEEEeCC
Q 003606 748 KQLIGFDRVHTVAKGSKEISFGVDP 772 (808)
Q Consensus 748 k~L~gF~kv~L~pGes~~V~~~l~~ 772 (808)
..|.+-+++.|.|||++++++.++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 4677788889999999999999986
No 114
>PRK13555 azoreductase; Provisional
Probab=21.04 E-value=2.1e+02 Score=29.51 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHh
Q 003606 507 FHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVART 556 (808)
Q Consensus 507 ~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~ 556 (808)
..+..+..+.||.+|++.= . + ++.+|..=..+|+.|...
T Consensus 80 ~~~~~~~~~~AD~lvi~~P--~-~--------n~~~Pa~LK~~iD~v~~~ 118 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFP--L-W--------NFTVPAPLITYISYLSQA 118 (208)
T ss_pred HHHHHHHHHHcCEEEEEcC--c-c--------cccchHHHHHHHHHHhcC
Confidence 3455677889999997652 1 1 455677667777777643
No 115
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=20.96 E-value=2.5e+02 Score=30.62 Aligned_cols=121 Identities=12% Similarity=0.247 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhhhccCCC--cccCcCCCCCeEEEEccccccccccCCCcccCCCCcccHHHHHHhhhcceE---EecC
Q 003606 421 KKLALDAARQGIVLLKNDKK--FLPLNKNAVSSLAIIGPLVNNISQMGGGYTGIPCSPKSLLRGLEAYVSKTH---YASG 495 (808)
Q Consensus 421 ~~lA~eaA~eSiVLLKN~~~--~LPL~~~~~~kIaViGp~a~~~~~~~G~~sg~~~~~~t~l~gl~~~~~~v~---y~~g 495 (808)
+.+.-.+..+...++++... -||+.. .++++++.....+. ..+..+.+.|++.+++.. +..-
T Consensus 126 ~gi~g~~~~~~~~vv~~~~~~~~l~~~~--~~kv~vvsQTT~~~-----------~~~~~i~~~l~~~~~~~~~~~~nTI 192 (281)
T PF02401_consen 126 IGILGYAPEEKAIVVESPEDVEKLPISD--PKKVAVVSQTTQSV-----------EKFEEIVEALKKRFPELEGPVFNTI 192 (281)
T ss_dssp HHHHCCHHTS-EEEESSHHHHHHGGGSS--TTCEEEEE-TTS-H-----------HHHHHHHHHHHHHSTCEE-SCC-S-
T ss_pred EEecccccCCceEEeCChhhhcccCCCC--CCeEEEEEeecccH-----------HHHHHHHHHHHHhCccccCCCCCCC
Confidence 33333333345556655432 356553 36899986321111 012345677777777644 2112
Q ss_pred CCCCCCCCcccHHHHHHHhhcCCEEEEEEecCCCCccccCCCCCCCCChhhHHHHHHHHHhCCCCEEEEEeCCCcccc--
Q 003606 496 CHDVPCNSDAGFHEAVRIAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQQMSLVTSVARTSKRPVILVLTGGGPLDV-- 573 (808)
Q Consensus 496 ~~~~~~~~~~~~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~LI~~v~~~~~kpvVVVl~~g~P~~l-- 573 (808)
|. .+..-.+++.++++..|++||+-|.+ ..+-.+|.+-..+. ++|+..| .++=++
T Consensus 193 C~----aT~~RQ~a~~~La~~vD~miVIGg~~---------------SsNT~kL~eia~~~-~~~t~~I---e~~~el~~ 249 (281)
T PF02401_consen 193 CY----ATQNRQEAARELAKEVDAMIVIGGKN---------------SSNTRKLAEIAKEH-GKPTYHI---ETADELDP 249 (281)
T ss_dssp -C----HHHHHHHHHHHHHCCSSEEEEES-TT----------------HHHHHHHHHHHHC-TTCEEEE---SSGGG--H
T ss_pred CH----hHHHHHHHHHHHHhhCCEEEEecCCC---------------CccHHHHHHHHHHh-CCCEEEe---CCccccCH
Confidence 21 12233456678889999888765533 23455666544444 6777765 335455
Q ss_pred cccc
Q 003606 574 SFAE 577 (808)
Q Consensus 574 ~~~~ 577 (808)
.|+.
T Consensus 250 ~~l~ 253 (281)
T PF02401_consen 250 EWLK 253 (281)
T ss_dssp HHHT
T ss_pred hHhC
Confidence 4554
No 116
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=20.46 E-value=92 Score=33.93 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=32.8
Q ss_pred HhhcCCEEEEEEecCCCCccccCCCCCCCCChh---hHHHHHHHHHhCCCCEEEEEeCCCccccc
Q 003606 513 IAKKADFVIVVAGLDLTQETEDRDRVSLLLPGQ---QMSLVTSVARTSKRPVILVLTGGGPLDVS 574 (808)
Q Consensus 513 ~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~---q~~LI~~v~~~~~kpvVVVl~~g~P~~l~ 574 (808)
.+++||+||+++|... .++.+|.++ ++.+ -.++++++.+. +++-++++. .+|+++.
T Consensus 63 ~l~dADiVIit~g~p~---~~~~~r~e~-~~~n~~i~~~i~~~i~~~-~p~~~iIv~-sNP~di~ 121 (300)
T cd01339 63 DIAGSDVVVITAGIPR---KPGMSRDDL-LGTNAKIVKEVAENIKKY-APNAIVIVV-TNPLDVM 121 (300)
T ss_pred HhCCCCEEEEecCCCC---CcCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEEEe-cCcHHHH
Confidence 4689999999998653 234444321 1111 13455566666 455555555 5798774
No 117
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=20.43 E-value=1.4e+02 Score=36.47 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHhhcCCCeEEEcchhhHhhhhhccccCCCHHHHHHHHHHcCCCccCC
Q 003606 313 ARNEWGFKGYITSDCDAVATIFEYQNYTKTHEDSAAGVLKAGMDINCG 360 (808)
Q Consensus 313 LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~ 360 (808)
|.+=+||+|.|+||.++.+.+.- .....++++.+.---.-|.|+.|.
T Consensus 74 lH~f~~w~g~ilTDSGgfQv~s~-g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 74 IHSLIGFDGPIMTDSGSFQLSVY-GDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred hHHHhCCCCCeEecCCceeeeec-CccccCHHHHHHHHHHhCCCEEEE
Confidence 99999999999999998664432 224567877665555679999874
No 118
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=20.35 E-value=2.1e+02 Score=30.08 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=34.7
Q ss_pred EEEEEEEEeCCCCCcceeEEEEEecCCCCCCCchhhhcccccc-ccCCCCEEEEEEEeC
Q 003606 714 FHVQISVTNAGDVDGSHVVMLFARVPKVSQGTPEKQLIGFDRV-HTVAKGSKEISFGVD 771 (808)
Q Consensus 714 ~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~ 771 (808)
=.++++|+|+|+. .-.+|..+.+.......+...+.-.=-+ .|+||+++.+.|-..
T Consensus 38 ~~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 38 KDASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred cEEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 3578999999975 6899998875321110111112222223 489999999997654
No 119
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.16 E-value=2e+02 Score=31.36 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=37.0
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEEEecCCCCC-------CCch----hhhcccc--ccccCCCCEEEEEEEeCC
Q 003606 712 LRFHVQISVTNAGDVDGSHVVMLFARVPKVSQ-------GTPE----KQLIGFD--RVHTVAKGSKEISFGVDP 772 (808)
Q Consensus 712 ~~~~vsv~VtNtG~~~G~eVvQlYv~~~~~~~-------~~P~----k~L~gF~--kv~L~pGes~~V~~~l~~ 772 (808)
.....+++|+|..+.+=+ |+|.=+.|.+.. ..|. ..-.|.- ++.|+|||+++++|....
T Consensus 242 ~~~~~~itv~N~~~~~v~--v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 242 RTYEYTITVRNNKDEPVT--VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEV 313 (317)
T ss_pred EEEEEEEEEECCCCCCEE--EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEE
Confidence 357789999999855544 666666666541 1111 2233322 346899999999888754
Done!