BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003608
(808 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
pdb|1Z3H|B Chain B, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State
Length = 968
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/437 (22%), Positives = 187/437 (42%), Gaps = 38/437 (8%)
Query: 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81
K +E +L Q + + LL +I N LS R ++ FKNFI + W N
Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80
Query: 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY 141
+ V+ +++ I+ + +P L+VQ+GE + +I +D+P++WP LL + L + +
Sbjct: 81 NNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMV 138
Query: 142 ---GALFVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLVQI---VNPS 190
G L V + +++ F+SDE E V + F +LL + + S
Sbjct: 139 TNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS 198
Query: 191 LEVA-DLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQR 249
L + D++ ++ K+++ +IP + + N+ M +F L P +P + E
Sbjct: 199 LNILFDVLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHA 256
Query: 250 KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309
KVK ++ TR+ D+ F M + ++ NLL I
Sbjct: 257 SV--LIKVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTSIS 300
Query: 310 VGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDE 367
D + + L +L+ + + + ++ + +I+ P + + D +L+++
Sbjct: 301 NQPKY-DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED 359
Query: 368 DPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEY 427
DP EY+R+ + D + R A DF+ EL K F+ + G +Y P
Sbjct: 360 DPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP--S 416
Query: 428 KPYRQKDGALLAIGALC 444
K ++ KD + AL
Sbjct: 417 KNWKFKDLYIYLFTALA 433
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 960
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/437 (22%), Positives = 187/437 (42%), Gaps = 38/437 (8%)
Query: 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81
K +E +L Q + + LL +I N LS R ++ FKNFI + W N
Sbjct: 21 KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80
Query: 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY 141
+ V+ +++ I+ + +P L+VQ+GE + +I +D+P++WP LL + L + +
Sbjct: 81 NNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMV 138
Query: 142 ---GALFVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLVQI---VNPS 190
G L V + +++ F+SDE E V + F +LL + + S
Sbjct: 139 TNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKAS 198
Query: 191 LEVA-DLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQR 249
L + D++ ++ K+++ +IP + + N+ M +F L P +P + E
Sbjct: 199 LNILFDVLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHA 256
Query: 250 KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309
KVK ++ TR+ D+ F M + ++ NLL I
Sbjct: 257 SV--LIKVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTSIS 300
Query: 310 VGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDE 367
D + + L +L+ + + + ++ + +I+ P + + D +L+++
Sbjct: 301 NQPKY-DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFED 359
Query: 368 DPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEY 427
DP EY+R+ + D + R A DF+ EL K F+ + G +Y P
Sbjct: 360 DPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP--S 416
Query: 428 KPYRQKDGALLAIGALC 444
K ++ KD + AL
Sbjct: 417 KNWKFKDLYIYLFTALA 433
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From
The Crystal Structure And Mutagenesis Of The
Lec(Slash)egf Domains
Length = 162
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 67 AKNWAPHEPNEQQKISQVDKDMVRDHI 93
AKNWAP EPN +QK D+D V +I
Sbjct: 73 AKNWAPGEPNNRQK----DEDCVEIYI 95
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 67 AKNWAPHEPNEQQKISQVDKDMVRDHI 93
AKNWAP EPN +QK D+D V +I
Sbjct: 73 AKNWAPGEPNNRQK----DEDCVEIYI 95
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 433 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-- 489
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 389 KESGILVLGAIAEGCMQGMIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 444
Query: 490 INFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 548
++ + + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 445 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 501
Query: 549 FKLMNEVENEDLVF---TLETIVDKFGEEM 575
++ ++++L+ + T+ D G +
Sbjct: 502 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 531
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 433 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-- 489
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 376 KESGILVLGAIAEGCMQGMIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 431
Query: 490 INFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 548
++ + + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 432 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 488
Query: 549 FKLMNEVENEDLVF---TLETIVDKFGEEM 575
++ ++++L+ + T+ D G +
Sbjct: 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 518
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 433 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-- 489
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 414 KESGILVLGAIAEGCMQGMIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 469
Query: 490 INFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 548
++ + + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 470 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 526
Query: 549 FKLMNEVENEDLVF---TLETIVDKFGEEM 575
++ ++++L+ + T+ D G +
Sbjct: 527 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 556
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 433 KDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN 491
K+ +L +GA+ + Q PY EL + H+ S +R+ W +YAH
Sbjct: 414 KESGILVLGAIAEGCXQGXIPYLPEL----IPHLIQCLSDKKALVRSITCWTLSRYAHWV 469
Query: 492 FSD-QNNFRKALHS-VVSGLRDPELPVRVDSVFALRSF-VEACRDLNEIRPILPQLLDEF 548
S + + K L + ++ + D V+ + A + EAC E+ P L +LD
Sbjct: 470 VSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAFATLEEEAC---TELVPYLAYILDTL 526
Query: 549 FKLMNEVENEDLVF---TLETIVDKFGEEM 575
++ ++++L+ + T+ D G +
Sbjct: 527 VFAFSKYQHKNLLILYDAIGTLADSVGHHL 556
>pdb|3U9M|A Chain A, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|C Chain C, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|E Chain E, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|G Chain G, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
Length = 160
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 466 FPE----FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSV 521
FPE F++P ++ + + NFS+ N+FR L S+ + ++ ++ ++++
Sbjct: 4 FPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENE 63
Query: 522 FALRSFVEACRDLNEIRP--ILPQLLDEFFKLMNEVENE 558
+ + + + + + L ++L F K + V+NE
Sbjct: 64 YIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNE 102
>pdb|3V5X|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5X|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5Y|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|C Chain C, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|D Chain D, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Z|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
pdb|3V5Z|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
Length = 161
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 466 FPE----FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSV 521
FPE F++P ++ + + NFS+ N+FR L S+ + ++ ++ ++++
Sbjct: 4 FPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENE 63
Query: 522 FALRSFVEACRDLNEIRP--ILPQLLDEFFKLMNEVENE 558
+ + + + + + L ++L F K + V+NE
Sbjct: 64 YIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNE 102
>pdb|1U2Z|A Chain A, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|B Chain B, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|C Chain C, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
Length = 433
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 180 FNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNV 221
F R I NP E+ LI+ C +F S Y E K+ + P++
Sbjct: 106 FKRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,998,936
Number of Sequences: 62578
Number of extensions: 1010904
Number of successful extensions: 2211
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2196
Number of HSP's gapped (non-prelim): 26
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)