Query 003608
Match_columns 808
No_of_seqs 212 out of 1708
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 8E-132 2E-136 1068.9 80.7 803 1-807 1-810 (1010)
2 COG5656 SXM1 Importin, protein 100.0 2.8E-97 6E-102 772.2 66.7 797 3-807 2-811 (970)
3 KOG1992 Nuclear export recepto 100.0 1.4E-77 3E-82 633.2 62.1 742 2-787 3-783 (960)
4 KOG1993 Nuclear transport rece 100.0 8.1E-71 1.8E-75 578.8 54.6 756 6-807 2-822 (978)
5 KOG2274 Predicted importin 9 [ 100.0 4E-60 8.6E-65 506.2 53.6 738 1-807 1-790 (1005)
6 KOG2023 Nuclear transport rece 100.0 2.1E-54 4.6E-59 446.6 42.1 719 3-805 12-825 (885)
7 KOG2171 Karyopherin (importin) 100.0 6.8E-51 1.5E-55 450.5 55.6 668 1-778 1-694 (1075)
8 COG5657 CSE1 CAS/CSE protein i 100.0 8.3E-48 1.8E-52 413.8 53.3 730 1-789 1-771 (947)
9 PF08506 Cse1: Cse1; InterPro 100.0 2.9E-42 6.3E-47 359.9 24.7 349 150-524 1-370 (370)
10 KOG1241 Karyopherin (importin) 100.0 5.6E-38 1.2E-42 331.1 50.0 686 5-776 2-732 (859)
11 COG5215 KAP95 Karyopherin (imp 100.0 2.8E-33 6E-38 285.6 51.4 687 1-775 1-731 (858)
12 KOG2022 Nuclear transport rece 99.9 5.1E-21 1.1E-25 206.6 60.9 637 3-683 6-751 (982)
13 COG5101 CRM1 Importin beta-rel 99.9 5.9E-20 1.3E-24 190.5 45.4 543 2-570 12-649 (1053)
14 PF03378 CAS_CSE1: CAS/CSE pro 99.9 3.3E-22 7.1E-27 213.7 21.5 260 533-807 16-283 (435)
15 KOG2021 Nuclear mRNA export fa 99.8 2.1E-14 4.6E-19 152.9 54.2 503 4-552 3-585 (980)
16 KOG2171 Karyopherin (importin) 99.8 1.6E-12 3.6E-17 146.6 57.0 515 15-647 48-615 (1075)
17 KOG2081 Nuclear transport regu 99.7 5.3E-13 1.1E-17 139.6 40.1 498 22-584 2-552 (559)
18 KOG2023 Nuclear transport rece 99.6 1.4E-11 3E-16 130.2 36.3 358 429-802 368-780 (885)
19 KOG1241 Karyopherin (importin) 99.5 3.6E-09 7.9E-14 114.2 50.8 675 18-794 51-855 (859)
20 KOG2020 Nuclear transport rece 99.5 1.3E-09 2.8E-14 126.1 41.4 172 4-184 10-199 (1041)
21 PF03810 IBN_N: Importin-beta 99.4 8.2E-13 1.8E-17 107.1 8.0 75 24-98 1-76 (77)
22 COG5215 KAP95 Karyopherin (imp 99.3 1.9E-06 4.1E-11 90.5 48.7 374 382-779 378-839 (858)
23 KOG1824 TATA-binding protein-i 99.2 1E-05 2.2E-10 90.1 53.4 611 8-714 9-729 (1233)
24 KOG1824 TATA-binding protein-i 98.9 0.00031 6.6E-09 78.8 45.9 520 80-687 167-743 (1233)
25 KOG1991 Nuclear transport rece 98.8 0.00045 9.7E-09 78.3 45.5 195 560-778 523-737 (1010)
26 PF08389 Xpo1: Exportin 1-like 98.8 3.4E-08 7.4E-13 91.7 10.6 130 101-235 1-137 (148)
27 KOG0213 Splicing factor 3b, su 98.3 0.00089 1.9E-08 73.1 28.4 249 501-777 717-970 (1172)
28 KOG0212 Uncharacterized conser 98.2 0.00028 6E-09 74.8 21.2 364 383-779 13-389 (675)
29 KOG0915 Uncharacterized conser 98.0 0.0031 6.7E-08 74.7 28.0 297 428-778 969-1288(1702)
30 KOG1410 Nuclear transport rece 98.0 0.039 8.4E-07 60.2 46.0 145 1-155 1-160 (1082)
31 KOG1242 Protein containing ada 98.0 0.0042 9.1E-08 67.5 25.7 236 496-760 212-449 (569)
32 PF01602 Adaptin_N: Adaptin N 97.9 0.079 1.7E-06 60.6 41.0 503 4-665 7-522 (526)
33 PTZ00429 beta-adaptin; Provisi 97.9 0.092 2E-06 61.0 42.3 140 11-153 39-209 (746)
34 PLN03200 cellulose synthase-in 97.8 0.25 5.3E-06 63.0 43.8 307 429-756 459-812 (2102)
35 PF10508 Proteasom_PSMB: Prote 97.7 0.011 2.5E-07 66.2 24.4 222 464-706 81-318 (503)
36 KOG1020 Sister chromatid cohes 97.6 0.089 1.9E-06 63.0 31.3 350 429-803 829-1260(1692)
37 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.0002 4.3E-09 59.7 7.3 79 477-557 3-82 (97)
38 KOG1248 Uncharacterized conser 97.6 0.083 1.8E-06 61.9 30.2 198 385-588 712-918 (1176)
39 PTZ00429 beta-adaptin; Provisi 97.6 0.088 1.9E-06 61.2 30.0 92 428-531 117-210 (746)
40 KOG1242 Protein containing ada 97.6 0.12 2.5E-06 56.7 28.9 363 386-779 33-427 (569)
41 PF01602 Adaptin_N: Adaptin N 97.6 0.01 2.2E-07 67.9 23.0 204 428-668 91-297 (526)
42 KOG0166 Karyopherin (importin) 97.5 0.0056 1.2E-07 66.1 18.6 260 429-708 123-394 (514)
43 KOG1060 Vesicle coat complex A 97.4 0.043 9.3E-07 61.2 22.9 92 428-531 120-211 (968)
44 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0007 1.5E-08 56.5 6.5 92 432-528 2-95 (97)
45 KOG0166 Karyopherin (importin) 97.2 0.0031 6.8E-08 68.0 12.3 223 428-669 164-395 (514)
46 KOG1943 Beta-tubulin folding c 97.1 0.87 1.9E-05 53.2 34.7 66 84-153 337-410 (1133)
47 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00041 8.9E-09 51.5 2.5 54 474-527 1-55 (55)
48 KOG1059 Vesicle coat complex A 97.0 0.035 7.5E-07 61.2 17.5 178 464-667 148-328 (877)
49 PF05918 API5: Apoptosis inhib 97.0 0.36 7.9E-06 53.5 25.2 189 471-686 33-227 (556)
50 PF10508 Proteasom_PSMB: Prote 97.0 0.19 4.1E-06 56.6 23.7 371 390-795 58-463 (503)
51 KOG0212 Uncharacterized conser 96.9 0.38 8.3E-06 52.0 24.0 73 494-568 78-152 (675)
52 KOG1992 Nuclear export recepto 96.9 1.1 2.5E-05 50.7 49.5 245 467-740 505-779 (960)
53 COG5181 HSH155 U2 snRNP splice 96.9 0.14 3.1E-06 55.5 20.1 216 499-733 520-740 (975)
54 PLN03200 cellulose synthase-in 96.8 0.087 1.9E-06 66.8 20.8 332 429-793 417-763 (2102)
55 PF12717 Cnd1: non-SMC mitotic 96.8 0.017 3.7E-07 55.0 11.6 151 430-592 2-157 (178)
56 PF12719 Cnd3: Nuclear condens 96.6 0.13 2.8E-06 53.6 17.5 175 456-648 23-207 (298)
57 PF03378 CAS_CSE1: CAS/CSE pro 96.5 0.077 1.7E-06 57.9 16.0 202 572-795 17-230 (435)
58 PF14500 MMS19_N: Dos2-interac 96.5 0.13 2.8E-06 52.1 16.3 242 465-732 4-258 (262)
59 PF12460 MMS19_C: RNAPII trans 96.4 0.96 2.1E-05 49.7 24.2 281 389-685 116-413 (415)
60 cd00020 ARM Armadillo/beta-cat 96.4 0.0036 7.8E-08 55.2 4.0 99 428-528 19-119 (120)
61 KOG0915 Uncharacterized conser 96.4 0.38 8.2E-06 58.0 21.0 197 383-588 970-1179(1702)
62 KOG1061 Vesicle coat complex A 96.3 0.17 3.6E-06 56.9 16.6 148 428-587 98-245 (734)
63 PF12348 CLASP_N: CLASP N term 96.2 0.16 3.4E-06 50.7 15.0 137 428-572 19-163 (228)
64 PF08167 RIX1: rRNA processing 96.0 0.054 1.2E-06 50.7 10.0 125 464-588 29-162 (165)
65 COG5181 HSH155 U2 snRNP splice 96.0 1.4 3E-05 48.3 21.0 192 386-592 297-493 (975)
66 COG5064 SRP1 Karyopherin (impo 95.8 0.27 5.9E-06 49.6 14.0 120 429-555 170-297 (526)
67 KOG1058 Vesicle coat complex C 95.8 3.5 7.5E-05 46.5 23.5 81 462-550 101-181 (948)
68 KOG1240 Protein kinase contain 95.7 0.38 8.2E-06 56.7 16.8 279 385-712 438-750 (1431)
69 PF13513 HEAT_EZ: HEAT-like re 95.7 0.0073 1.6E-07 44.7 2.4 55 430-487 1-55 (55)
70 PF12348 CLASP_N: CLASP N term 95.7 0.22 4.8E-06 49.7 13.7 166 382-558 19-192 (228)
71 PRK09687 putative lyase; Provi 95.5 0.089 1.9E-06 54.0 10.1 115 384-527 105-219 (280)
72 KOG1062 Vesicle coat complex A 95.4 6.3 0.00014 45.0 24.2 105 428-546 82-186 (866)
73 KOG1993 Nuclear transport rece 95.4 3.8 8.2E-05 46.6 22.2 234 457-710 523-772 (978)
74 PF02985 HEAT: HEAT repeat; I 95.4 0.014 3E-07 37.1 2.4 30 501-530 1-30 (31)
75 KOG1248 Uncharacterized conser 95.3 9.1 0.0002 45.8 54.9 284 474-778 630-922 (1176)
76 KOG1058 Vesicle coat complex C 95.2 2.5 5.5E-05 47.6 20.1 148 368-546 110-286 (948)
77 KOG2022 Nuclear transport rece 95.2 8.1 0.00018 44.6 25.6 217 499-733 503-755 (982)
78 PRK09687 putative lyase; Provi 95.0 0.17 3.7E-06 51.9 10.5 151 384-569 68-218 (280)
79 PF13646 HEAT_2: HEAT repeats; 94.7 0.074 1.6E-06 43.7 5.8 76 428-525 12-88 (88)
80 COG5096 Vesicle coat complex, 94.4 13 0.00027 43.3 29.4 144 429-588 68-211 (757)
81 PF08767 CRM1_C: CRM1 C termin 94.3 6.3 0.00014 41.4 20.3 122 539-669 67-196 (319)
82 cd00020 ARM Armadillo/beta-cat 93.8 0.045 9.8E-07 48.0 2.8 85 469-555 16-103 (120)
83 PF04826 Arm_2: Armadillo-like 93.8 0.59 1.3E-05 47.0 10.9 179 471-668 24-206 (254)
84 KOG1060 Vesicle coat complex A 93.8 15 0.00033 42.0 22.8 176 384-587 49-227 (968)
85 KOG1062 Vesicle coat complex A 93.8 16 0.00034 41.9 37.1 168 9-181 36-233 (866)
86 COG5656 SXM1 Importin, protein 93.7 15 0.00033 41.7 45.5 156 616-778 561-737 (970)
87 PF05004 IFRD: Interferon-rela 93.6 7.7 0.00017 40.5 19.1 206 316-553 57-283 (309)
88 KOG0213 Splicing factor 3b, su 93.5 17 0.00036 41.3 54.6 489 6-577 365-920 (1172)
89 PF05004 IFRD: Interferon-rela 93.4 9.1 0.0002 40.0 19.3 189 498-695 41-245 (309)
90 KOG4224 Armadillo repeat prote 93.3 0.39 8.5E-06 48.9 8.5 184 468-668 216-406 (550)
91 KOG0414 Chromosome condensatio 93.3 6.5 0.00014 46.9 19.2 138 386-532 291-431 (1251)
92 PF10521 DUF2454: Protein of u 93.2 11 0.00024 38.8 19.4 162 478-649 98-276 (282)
93 KOG0211 Protein phosphatase 2A 93.2 22 0.00047 41.7 30.4 407 15-530 248-665 (759)
94 KOG4653 Uncharacterized conser 93.1 6 0.00013 45.5 17.9 188 499-707 726-918 (982)
95 KOG1240 Protein kinase contain 92.9 3.8 8.3E-05 48.8 16.5 58 474-532 437-494 (1431)
96 PF10274 ParcG: Parkin co-regu 92.8 0.38 8.3E-06 45.0 7.2 89 498-587 36-130 (183)
97 PF04826 Arm_2: Armadillo-like 92.5 2.4 5.2E-05 42.7 13.0 133 428-568 25-159 (254)
98 PF13646 HEAT_2: HEAT repeats; 92.0 0.059 1.3E-06 44.3 0.8 49 470-527 10-58 (88)
99 PF12460 MMS19_C: RNAPII trans 91.1 27 0.00059 38.3 31.4 74 476-551 339-414 (415)
100 PF12717 Cnd1: non-SMC mitotic 91.1 2.8 6E-05 39.9 11.2 107 17-137 1-112 (178)
101 COG5096 Vesicle coat complex, 91.1 36 0.00078 39.7 24.3 104 428-548 104-209 (757)
102 KOG1020 Sister chromatid cohes 90.9 50 0.0011 41.0 38.4 135 93-269 821-959 (1692)
103 PF14500 MMS19_N: Dos2-interac 90.7 13 0.00028 37.7 16.1 218 428-667 11-237 (262)
104 PF05804 KAP: Kinesin-associat 90.2 14 0.0003 43.1 17.4 334 431-800 264-610 (708)
105 COG5240 SEC21 Vesicle coat com 90.0 35 0.00075 37.7 32.6 56 472-528 499-554 (898)
106 PF10363 DUF2435: Protein of u 90.0 1.8 3.8E-05 35.8 7.5 75 500-577 3-80 (92)
107 KOG1059 Vesicle coat complex A 89.7 42 0.00091 38.2 29.6 74 51-138 157-230 (877)
108 PF05536 Neurochondrin: Neuroc 89.5 14 0.00031 41.9 16.9 243 501-760 6-266 (543)
109 KOG0946 ER-Golgi vesicle-tethe 89.5 24 0.00052 40.5 17.7 213 499-728 21-262 (970)
110 PF12719 Cnd3: Nuclear condens 89.2 14 0.00031 38.4 15.7 166 11-181 34-207 (298)
111 KOG2274 Predicted importin 9 [ 89.1 52 0.0011 38.5 49.1 235 435-688 469-718 (1005)
112 KOG2160 Armadillo/beta-catenin 88.5 15 0.00033 38.1 14.5 102 428-532 95-199 (342)
113 KOG2956 CLIP-associating prote 88.2 20 0.00043 38.6 15.3 185 384-585 301-494 (516)
114 KOG4653 Uncharacterized conser 88.0 44 0.00095 38.9 18.7 181 467-669 734-920 (982)
115 PF08167 RIX1: rRNA processing 88.0 6.8 0.00015 36.6 11.0 132 406-552 23-164 (165)
116 KOG0211 Protein phosphatase 2A 87.9 63 0.0014 38.0 25.0 389 365-805 274-675 (759)
117 PF04510 DUF577: Family of unk 87.2 14 0.00031 34.1 12.0 62 88-150 3-69 (174)
118 PRK13800 putative oxidoreducta 87.1 2.3 5.1E-05 51.7 9.3 50 469-527 816-865 (897)
119 PF02985 HEAT: HEAT repeat; I 86.8 1.3 2.8E-05 28.0 3.8 29 410-446 2-30 (31)
120 KOG2956 CLIP-associating prote 86.7 22 0.00047 38.3 14.6 164 496-679 325-491 (516)
121 PF11865 DUF3385: Domain of un 86.1 8.7 0.00019 35.7 10.5 127 407-557 9-142 (160)
122 PF10363 DUF2435: Protein of u 85.5 2 4.4E-05 35.5 5.3 65 467-531 10-74 (92)
123 PF10521 DUF2454: Protein of u 85.2 17 0.00037 37.5 13.2 159 428-588 87-272 (282)
124 PF05918 API5: Apoptosis inhib 84.6 21 0.00046 40.0 14.2 69 471-543 70-138 (556)
125 KOG0168 Putative ubiquitin fus 84.1 28 0.00062 40.3 14.8 76 498-574 209-289 (1051)
126 KOG1077 Vesicle coat complex A 83.5 88 0.0019 35.7 27.7 131 383-554 382-513 (938)
127 PF01603 B56: Protein phosphat 83.4 36 0.00077 37.2 15.4 162 387-558 150-312 (409)
128 PF01603 B56: Protein phosphat 82.9 11 0.00023 41.3 11.1 95 614-713 275-376 (409)
129 PF08064 UME: UME (NUC010) dom 82.9 6.4 0.00014 33.7 7.5 88 499-588 10-103 (107)
130 smart00802 UME Domain in UVSB 81.9 10 0.00022 32.4 8.2 89 497-587 8-102 (107)
131 KOG1525 Sister chromatid cohes 81.2 1.5E+02 0.0032 37.3 20.4 60 743-803 276-335 (1266)
132 PF08161 NUC173: NUC173 domain 80.5 19 0.00042 34.7 10.7 94 557-665 17-125 (198)
133 PF00514 Arm: Armadillo/beta-c 80.1 1.9 4.2E-05 29.3 2.8 29 500-528 12-40 (41)
134 COG5098 Chromosome condensatio 79.9 1.2E+02 0.0025 34.7 20.8 138 382-530 275-416 (1128)
135 COG5116 RPN2 26S proteasome re 79.6 9.7 0.00021 41.7 8.9 115 429-560 565-679 (926)
136 KOG2021 Nuclear mRNA export fa 78.7 1.3E+02 0.0029 34.7 33.9 78 514-596 711-791 (980)
137 KOG0946 ER-Golgi vesicle-tethe 77.9 1.4E+02 0.0031 34.6 17.4 137 386-555 39-178 (970)
138 PRK13800 putative oxidoreducta 77.6 3.6 7.8E-05 50.1 5.9 78 428-526 819-896 (897)
139 PF13251 DUF4042: Domain of un 77.2 66 0.0014 30.5 12.9 122 509-669 49-176 (182)
140 PF05536 Neurochondrin: Neuroc 76.7 1.4E+02 0.0031 34.0 18.6 150 638-792 98-256 (543)
141 COG5064 SRP1 Karyopherin (impo 76.5 4.6 0.0001 41.1 5.2 129 430-564 130-264 (526)
142 PF05804 KAP: Kinesin-associat 76.2 1.7E+02 0.0036 34.5 21.9 248 429-709 344-609 (708)
143 KOG1077 Vesicle coat complex A 75.3 1.6E+02 0.0035 33.8 23.2 144 430-586 303-450 (938)
144 COG5240 SEC21 Vesicle coat com 75.3 1.4E+02 0.0031 33.2 29.2 343 352-736 162-538 (898)
145 PF03224 V-ATPase_H_N: V-ATPas 75.2 60 0.0013 34.0 13.6 163 35-208 54-226 (312)
146 PF08064 UME: UME (NUC010) dom 75.0 26 0.00057 29.9 8.8 53 611-670 32-86 (107)
147 KOG2213 Apoptosis inhibitor 5/ 74.2 1E+02 0.0022 32.7 14.0 72 473-555 37-108 (460)
148 KOG1061 Vesicle coat complex A 74.0 1E+02 0.0022 35.6 15.2 98 463-569 89-186 (734)
149 PF08767 CRM1_C: CRM1 C termin 73.7 17 0.00037 38.1 9.0 161 613-779 46-226 (319)
150 KOG2933 Uncharacterized conser 73.6 20 0.00044 36.4 8.7 134 384-530 102-235 (334)
151 PF04821 TIMELESS: Timeless pr 73.2 93 0.002 31.7 13.9 152 636-796 43-207 (266)
152 KOG4524 Uncharacterized conser 73.0 2.1E+02 0.0046 34.2 21.5 128 669-800 838-976 (1014)
153 KOG2062 26S proteasome regulat 72.7 35 0.00077 38.9 11.1 138 428-587 531-671 (929)
154 KOG2259 Uncharacterized conser 72.6 1.8E+02 0.0039 33.2 23.1 95 428-530 210-311 (823)
155 KOG2032 Uncharacterized conser 72.2 1.6E+02 0.0034 32.3 15.8 91 496-588 254-349 (533)
156 KOG2549 Transcription initiati 72.1 33 0.00072 37.8 10.5 103 317-446 262-371 (576)
157 KOG2085 Serine/threonine prote 71.8 62 0.0013 34.4 12.0 94 614-712 319-419 (457)
158 PF03224 V-ATPase_H_N: V-ATPas 70.8 1.2E+02 0.0027 31.7 14.7 126 402-552 70-200 (312)
159 KOG2025 Chromosome condensatio 70.8 2E+02 0.0044 33.1 23.4 69 463-531 88-157 (892)
160 PF11865 DUF3385: Domain of un 70.7 23 0.00051 32.8 8.2 143 637-792 9-152 (160)
161 KOG1078 Vesicle coat complex C 70.7 2.1E+02 0.0046 33.3 30.4 129 383-530 405-533 (865)
162 KOG2160 Armadillo/beta-catenin 70.4 62 0.0014 33.8 11.7 176 476-667 99-282 (342)
163 KOG4413 26S proteasome regulat 69.6 1.4E+02 0.003 30.7 15.9 59 497-556 79-141 (524)
164 PF07571 DUF1546: Protein of u 69.6 12 0.00026 31.0 5.3 59 382-446 18-79 (92)
165 KOG1943 Beta-tubulin folding c 69.6 2.6E+02 0.0057 33.9 42.5 138 384-530 355-501 (1133)
166 KOG2062 26S proteasome regulat 69.1 27 0.00058 39.8 9.2 114 429-559 568-681 (929)
167 cd08050 TAF6 TATA Binding Prot 68.5 37 0.00079 36.1 10.1 103 316-445 231-340 (343)
168 PF08506 Cse1: Cse1; InterPro 66.9 1.9E+02 0.0041 31.1 23.6 233 384-652 110-360 (370)
169 KOG1967 DNA repair/transcripti 66.4 22 0.00049 41.5 8.2 90 497-588 906-1002(1030)
170 PF13001 Ecm29: Proteasome sta 65.4 69 0.0015 36.2 12.1 82 6-99 25-113 (501)
171 KOG0392 SNF2 family DNA-depend 65.3 38 0.00083 41.1 10.0 170 387-570 750-926 (1549)
172 KOG3961 Uncharacterized conser 65.1 63 0.0014 31.0 9.5 88 498-587 112-205 (262)
173 PF10274 ParcG: Parkin co-regu 65.0 85 0.0018 29.7 10.5 62 613-676 57-118 (183)
174 smart00802 UME Domain in UVSB 64.5 62 0.0013 27.6 8.7 77 536-627 4-87 (107)
175 PF10350 DUF2428: Putative dea 63.9 1.4E+02 0.003 30.2 12.9 123 429-552 110-249 (255)
176 PF08569 Mo25: Mo25-like; Int 63.5 1.4E+02 0.0031 31.4 13.2 140 49-208 87-237 (335)
177 KOG0168 Putative ubiquitin fus 62.7 3.2E+02 0.0069 32.3 19.8 157 465-636 216-377 (1051)
178 COG5218 YCG1 Chromosome conden 62.1 31 0.00066 38.2 7.8 90 428-522 103-192 (885)
179 KOG1967 DNA repair/transcripti 61.2 27 0.00058 40.9 7.6 141 635-780 864-1008(1030)
180 KOG1822 Uncharacterized conser 59.9 5.1E+02 0.011 33.8 24.5 116 456-573 872-992 (2067)
181 PF08389 Xpo1: Exportin 1-like 58.4 57 0.0012 29.4 8.4 47 474-524 100-148 (148)
182 COG5218 YCG1 Chromosome conden 58.3 1.6E+02 0.0034 33.1 12.2 74 456-531 88-163 (885)
183 KOG4524 Uncharacterized conser 58.2 4E+02 0.0087 32.0 18.4 116 435-555 567-686 (1014)
184 KOG2025 Chromosome condensatio 58.0 66 0.0014 36.7 9.6 91 428-524 97-188 (892)
185 TIGR02270 conserved hypothetic 57.0 36 0.00079 37.0 7.7 77 428-527 129-205 (410)
186 KOG1851 Uncharacterized conser 56.2 2E+02 0.0044 36.3 13.9 151 34-207 1524-1679(1710)
187 COG5116 RPN2 26S proteasome re 56.1 1.5E+02 0.0032 33.0 11.6 149 412-588 520-669 (926)
188 PF00514 Arm: Armadillo/beta-c 54.3 34 0.00073 23.0 4.6 25 93-117 17-41 (41)
189 smart00185 ARM Armadillo/beta- 54.1 9.6 0.00021 25.4 1.8 28 501-528 13-40 (41)
190 KOG4535 HEAT and armadillo rep 53.9 86 0.0019 34.0 9.3 123 385-524 470-598 (728)
191 PLN03076 ARF guanine nucleotid 53.3 6.8E+02 0.015 33.2 31.5 97 51-154 1150-1255(1780)
192 KOG2549 Transcription initiati 52.8 2.2E+02 0.0047 31.8 12.3 71 574-650 281-351 (576)
193 KOG2259 Uncharacterized conser 52.6 3.9E+02 0.0084 30.7 14.2 55 474-531 387-441 (823)
194 PF01465 GRIP: GRIP domain; I 51.2 34 0.00074 24.0 4.1 35 84-118 3-37 (46)
195 KOG4500 Rho/Rac GTPase guanine 50.9 3.1E+02 0.0066 29.7 12.6 33 499-531 86-118 (604)
196 PF12231 Rif1_N: Rap1-interact 49.5 3.7E+02 0.0079 29.0 24.4 246 406-668 37-304 (372)
197 PF14664 RICTOR_N: Rapamycin-i 48.9 70 0.0015 34.4 8.2 107 691-805 38-145 (371)
198 cd08050 TAF6 TATA Binding Prot 48.6 1.2E+02 0.0026 32.3 9.8 103 673-780 205-322 (343)
199 PF12054 DUF3535: Domain of un 47.9 3.7E+02 0.008 29.7 13.8 96 429-529 100-197 (441)
200 PF13925 Katanin_con80: con80 47.7 2.4E+02 0.0051 26.3 12.3 53 100-155 41-101 (164)
201 PF11698 V-ATPase_H_C: V-ATPas 46.3 57 0.0012 28.4 5.6 75 37-120 44-118 (119)
202 PF14225 MOR2-PAG1_C: Cell mor 46.0 3.4E+02 0.0073 27.6 13.5 143 498-669 109-256 (262)
203 KOG0889 Histone acetyltransfer 43.9 2.6E+02 0.0055 38.8 13.0 231 496-753 543-794 (3550)
204 PF04388 Hamartin: Hamartin pr 43.7 6.1E+02 0.013 29.9 15.8 150 502-686 6-156 (668)
205 KOG4692 Predicted E3 ubiquitin 42.9 74 0.0016 32.7 6.6 102 693-801 239-348 (489)
206 KOG2137 Protein kinase [Signal 41.9 4.5E+02 0.0098 30.5 13.1 87 613-706 369-457 (700)
207 smart00755 Grip golgin-97, Ran 41.9 52 0.0011 23.1 3.9 34 85-119 3-36 (46)
208 KOG0392 SNF2 family DNA-depend 41.6 8.1E+02 0.018 30.7 16.6 78 474-555 143-220 (1549)
209 KOG1820 Microtubule-associated 41.5 5.1E+02 0.011 31.1 14.1 185 496-704 249-440 (815)
210 smart00638 LPD_N Lipoprotein N 41.2 1.7E+02 0.0038 33.7 10.6 101 428-539 409-517 (574)
211 PF09324 DUF1981: Domain of un 41.0 1.4E+02 0.003 24.3 6.9 51 98-148 28-84 (86)
212 PF04388 Hamartin: Hamartin pr 40.7 2.2E+02 0.0048 33.4 11.1 78 474-553 82-162 (668)
213 PF14668 RICTOR_V: Rapamycin-i 38.9 78 0.0017 24.9 4.9 55 432-490 3-59 (73)
214 PF08146 BP28CT: BP28CT (NUC21 38.6 2.6E+02 0.0056 25.7 9.1 76 516-592 37-119 (153)
215 KOG3036 Protein involved in ce 37.7 4.3E+02 0.0093 26.4 12.5 114 85-208 113-246 (293)
216 KOG4224 Armadillo repeat prote 36.6 53 0.0011 34.2 4.6 88 471-558 178-266 (550)
217 PF03130 HEAT_PBS: PBS lyase H 36.1 22 0.00047 21.6 1.1 14 476-489 1-14 (27)
218 PF07571 DUF1546: Protein of u 35.8 1.8E+02 0.0038 24.1 6.9 54 51-113 19-72 (92)
219 smart00567 EZ_HEAT E-Z type HE 35.7 47 0.001 20.5 2.7 14 475-488 2-15 (30)
220 PF12765 Cohesin_HEAT: HEAT re 35.6 33 0.00072 23.5 2.1 27 498-524 16-42 (42)
221 PF14225 MOR2-PAG1_C: Cell mor 35.6 3.2E+02 0.007 27.7 10.1 74 497-573 185-258 (262)
222 PF08713 DNA_alkylation: DNA a 35.2 1.6E+02 0.0035 28.5 8.0 98 428-543 98-196 (213)
223 KOG1820 Microtubule-associated 34.5 6E+02 0.013 30.5 13.3 139 428-574 307-448 (815)
224 PF04118 Dopey_N: Dopey, N-ter 34.3 5.6E+02 0.012 26.7 16.8 88 499-587 53-144 (307)
225 PF13251 DUF4042: Domain of un 34.0 4.2E+02 0.0091 25.2 10.5 143 386-531 2-176 (182)
226 KOG1293 Proteins containing ar 33.9 75 0.0016 35.9 5.5 60 469-531 470-535 (678)
227 cd03572 ENTH_epsin_related ENT 33.2 1.3E+02 0.0027 26.5 5.8 46 486-531 24-69 (122)
228 PF14911 MMS22L_C: S-phase gen 31.3 6.9E+02 0.015 26.8 20.9 239 464-712 73-334 (373)
229 PHA01351 putative minor struct 31.2 5.9E+02 0.013 29.3 11.6 27 751-777 213-239 (1070)
230 cd03568 VHS_STAM VHS domain fa 31.1 85 0.0018 28.5 4.6 70 722-793 35-106 (144)
231 KOG2933 Uncharacterized conser 30.9 1.6E+02 0.0034 30.3 6.7 100 428-531 100-201 (334)
232 PF12612 TFCD_C: Tubulin foldi 30.8 4.3E+02 0.0094 25.3 9.8 152 494-673 1-192 (193)
233 KOG1525 Sister chromatid cohes 30.7 1.2E+03 0.027 29.6 18.6 76 728-807 186-261 (1266)
234 PF12333 Ipi1_N: Rix1 complex 29.9 97 0.0021 26.2 4.5 57 497-555 8-65 (102)
235 PF12783 Sec7_N: Guanine nucle 29.6 4E+02 0.0086 24.7 9.2 62 744-806 91-154 (168)
236 KOG2137 Protein kinase [Signal 29.6 5.7E+02 0.012 29.7 11.4 114 396-528 376-495 (700)
237 PF01347 Vitellogenin_N: Lipop 29.1 69 0.0015 37.4 4.8 94 429-531 448-555 (618)
238 cd00256 VATPase_H VATPase_H, r 29.0 8.1E+02 0.018 26.9 25.9 113 35-153 52-174 (429)
239 PF12830 Nipped-B_C: Sister ch 28.6 1.6E+02 0.0035 28.1 6.4 65 5-71 9-78 (187)
240 smart00145 PI3Ka Phosphoinosit 28.1 78 0.0017 30.1 4.0 59 477-548 61-119 (184)
241 cd03569 VHS_Hrs_Vps27p VHS dom 28.0 1.2E+02 0.0025 27.6 5.0 69 723-793 40-110 (142)
242 PF12830 Nipped-B_C: Sister ch 28.0 5.3E+02 0.012 24.5 10.7 81 468-553 16-96 (187)
243 cd07064 AlkD_like_1 A new stru 27.8 2.7E+02 0.0059 27.1 7.9 129 386-543 62-191 (208)
244 KOG1517 Guanine nucleotide bin 27.6 2.4E+02 0.0053 34.1 8.3 136 386-530 573-733 (1387)
245 PF13001 Ecm29: Proteasome sta 27.6 4.2E+02 0.0091 29.9 10.4 132 392-531 302-445 (501)
246 PF10193 Telomere_reg-2: Telom 27.3 2E+02 0.0044 24.8 6.1 67 513-579 18-89 (114)
247 KOG1048 Neural adherens juncti 27.3 1.8E+02 0.0039 33.8 7.2 104 470-574 243-350 (717)
248 cd00872 PI3Ka_I Phosphoinositi 26.9 77 0.0017 29.7 3.7 59 477-548 56-114 (171)
249 PF11698 V-ATPase_H_C: V-ATPas 26.8 1.4E+02 0.003 26.0 4.9 94 384-487 20-113 (119)
250 PF08569 Mo25: Mo25-like; Int 26.6 1.8E+02 0.0039 30.7 6.8 65 467-532 216-286 (335)
251 KOG2611 Neurochondrin/leucine- 26.5 9E+02 0.02 26.7 15.5 151 605-760 122-279 (698)
252 KOG4500 Rho/Rac GTPase guanine 26.5 6.3E+02 0.014 27.5 10.4 54 499-554 314-367 (604)
253 PLN03076 ARF guanine nucleotid 26.5 1.7E+03 0.036 29.8 26.8 147 542-688 1346-1512(1780)
254 PF14911 MMS22L_C: S-phase gen 26.3 6.4E+02 0.014 27.1 10.7 55 478-532 229-290 (373)
255 KOG1517 Guanine nucleotide bin 26.3 86 0.0019 37.6 4.6 97 429-531 570-673 (1387)
256 smart00288 VHS Domain present 26.3 2.5E+02 0.0054 25.0 6.8 37 496-532 33-69 (133)
257 cd03567 VHS_GGA VHS domain fam 26.1 1.2E+02 0.0026 27.4 4.6 68 724-793 38-112 (139)
258 cd03561 VHS VHS domain family; 25.0 4.1E+02 0.0089 23.6 8.0 56 497-554 34-91 (133)
259 cd03569 VHS_Hrs_Vps27p VHS dom 24.6 3.7E+02 0.0081 24.3 7.6 36 497-532 38-73 (142)
260 cd03567 VHS_GGA VHS domain fam 24.3 4.2E+02 0.009 23.9 7.8 36 497-532 35-70 (139)
261 PF11864 DUF3384: Domain of un 24.1 1E+03 0.022 26.5 25.8 378 387-808 7-419 (464)
262 smart00638 LPD_N Lipoprotein N 23.7 2.7E+02 0.0059 32.1 8.3 123 386-526 413-542 (574)
263 PF04118 Dopey_N: Dopey, N-ter 23.0 8.7E+02 0.019 25.3 16.9 34 101-134 2-35 (307)
264 KOG2085 Serine/threonine prote 23.0 9.8E+02 0.021 25.9 11.3 120 432-557 235-355 (457)
265 cd00870 PI3Ka_III Phosphoinosi 22.8 1E+02 0.0023 28.7 3.8 59 477-548 63-121 (166)
266 COG5095 TAF6 Transcription ini 22.3 8.6E+02 0.019 25.0 10.2 134 641-778 185-339 (450)
267 PF12397 U3snoRNP10: U3 small 22.0 5.2E+02 0.011 22.3 9.0 120 403-545 1-121 (121)
268 COG1413 FOG: HEAT repeat [Ener 21.5 3E+02 0.0065 28.9 7.6 80 429-530 56-136 (335)
269 cd03568 VHS_STAM VHS domain fa 21.4 3.1E+02 0.0066 24.9 6.4 56 497-554 34-91 (144)
270 KOG2149 Uncharacterized conser 21.4 7E+02 0.015 26.8 9.7 122 465-587 63-188 (393)
271 PF04336 DUF479: Protein of un 21.2 4.3E+02 0.0092 22.4 6.9 49 65-121 4-52 (106)
272 KOG4413 26S proteasome regulat 21.1 9.5E+02 0.021 25.0 17.4 62 469-530 91-158 (524)
273 KOG2081 Nuclear transport regu 21.0 1.2E+03 0.027 26.3 21.3 167 609-796 367-535 (559)
274 cd00864 PI3Ka Phosphoinositide 20.9 1.2E+02 0.0027 27.7 3.8 59 477-548 56-114 (152)
275 PF00790 VHS: VHS domain; Int 20.8 4.1E+02 0.0088 23.9 7.1 57 496-554 38-96 (140)
276 cd00869 PI3Ka_II Phosphoinosit 20.6 1.3E+02 0.0027 28.2 3.8 59 477-548 56-114 (169)
277 KOG3036 Protein involved in ce 20.4 7.1E+02 0.015 24.9 8.7 95 317-442 94-194 (293)
278 smart00288 VHS Domain present 20.4 1.9E+02 0.0041 25.8 4.8 71 721-793 34-107 (133)
279 PF08623 TIP120: TATA-binding 20.2 1.8E+02 0.0039 27.2 4.7 74 476-553 43-116 (169)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-132 Score=1068.93 Aligned_cols=803 Identities=47% Similarity=0.802 Sum_probs=768.9
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCC-CcCC
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ 79 (808)
Q Consensus 1 Md~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~-~~~~ 79 (808)
||.+.+.+++.+|+++|++.|+.||++|+|++++|||...|++|+.+.+.+.+|||+|+|+|||+|.++|+.++. ..+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998742 1356
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHccc
Q 003608 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (808)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~ 156 (808)
.+++++|..||++++..+...+..+|.++..|+..|.+.|||++||++++.+...++++ .+++||.||++++|.|+|
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999998 589999999999999999
Q ss_pred CCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003608 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (808)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 236 (808)
|+.+.|.++..++..+||.+++++..++..+ +..+.+++++++|+|++++++++|..+.+.+.|..||++|+++++++
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~--s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rp 238 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLSQE--SYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRP 238 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998765 35678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003608 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (808)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (808)
+|.++++.|+++|..++|||||||++++++|+++|||+|++..+++++|++.|..++++.+++.++++++..+++.|+++
T Consensus 239 vP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~ 318 (1010)
T KOG1991|consen 239 VPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSD 318 (1010)
T ss_pred CChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 99888889999999999999999999999999999999998889999999999999999999999999988666889999
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHH
Q 003608 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE 396 (808)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~ 396 (808)
+++.+++.|+..+++++.+|+.++||+..++..+|||.|+++++|+|.|++||.||+|+..|.++|.+||+.+|.+++..
T Consensus 319 rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~ 398 (1010)
T KOG1991|consen 319 RVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT 398 (1010)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcch
Q 003608 397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476 (808)
Q Consensus 397 l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~l 476 (808)
++.++|+++++.+++|+.+.+.++..++.++.+.+.+|||++++|++++.+.++.+|+.+++.|+.++|.|+|+++..++
T Consensus 399 ~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L 478 (1010)
T KOG1991|consen 399 LVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL 478 (1010)
T ss_pred HHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH
Confidence 99999999999999999999999888766668999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHhHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhh
Q 003608 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE 554 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~ll~~l~~ll~~ 554 (808)
|+||||++++|++..|+++..+.++++...++|. |++.|||+.|+.||+.|+.+++ .++.++|++|++|+.+++++++
T Consensus 479 rarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 479 RARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 8899999999999999999876 4577999999999999999999
Q ss_pred hchhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003608 555 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ 634 (808)
Q Consensus 555 ~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~ 634 (808)
+++|.+..+|+.+|..|+++++|||.+++++|..+|++++++++++.+.++++.+.+.|+++++++++.++++.|+++.+
T Consensus 559 ~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 559 VENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred cchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999998755444456789999999999999999999999999999
Q ss_pred HHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCccccc
Q 003608 635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL 714 (808)
Q Consensus 635 ~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l 714 (808)
+++.++|++.++++++..+|+++++++...+...++.++|.||+++|.+++++.+++.+|+.++++.|+||+.+|...++
T Consensus 639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~ 718 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL 718 (1010)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhh-chhhHHHHHHHHHHH
Q 003608 715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVVS 793 (808)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~-~~~~~~~~~~~~~i~ 793 (808)
+++.|++.+++++++++.++..+++|+..|++|++.++++|+|.++.++|.++..++.|+.. .+++.+++.+++|++
T Consensus 719 --s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvi 796 (1010)
T KOG1991|consen 719 --SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVI 796 (1010)
T ss_pred --ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 78899999999999999988888999899999999999999999999999999999999998 689999999999999
Q ss_pred HhHhhChHHHHHhh
Q 003608 794 FHERANSDLSIIVI 807 (808)
Q Consensus 794 ~~~~~n~~~~~~~~ 807 (808)
+|+||||.+|+++|
T Consensus 797 nalyynP~ltL~iL 810 (1010)
T KOG1991|consen 797 NALYYNPKLTLGIL 810 (1010)
T ss_pred HHHHcCcHHHHHHH
Confidence 99999999999986
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-97 Score=772.21 Aligned_cols=797 Identities=23% Similarity=0.410 Sum_probs=716.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCC-CcCCCC
Q 003608 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQKI 81 (808)
Q Consensus 3 ~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~-~~~~~l 81 (808)
.+.++|++.+|+++|++.|+.||++|++++++|||..+|++++.+.+.+..+|+.|+|||||+|.+.|+...+ ..++-.
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~De 81 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADE 81 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcc
Confidence 4789999999999999999999999999999999999999999998899999999999999999999998321 112224
Q ss_pred ChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCC-CCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHcccC
Q 003608 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK 157 (808)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~ 157 (808)
+++.|+.++++++..+..++...|+.+..++..|...||| +.|| +++...+++.++ .++.||.|+.+++|.|++|
T Consensus 82 k~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRwk 160 (970)
T COG5656 82 KSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRWK 160 (970)
T ss_pred cHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhhh
Confidence 4556666667777766788999999999999999999999 8999 999999999988 6899999999999999998
Q ss_pred CcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCC
Q 003608 158 SDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV 237 (808)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~ 237 (808)
.++.|..+..+..+.||.+.++...+...+ +..+.+++.+++|+|++.+++++|.++...+.+..|++.++.+++.|+
T Consensus 161 ~ndeq~di~~li~alfpile~~g~nl~s~~--ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 161 YNDEQVDILMLITALFPILEKVGGNLESQG--NYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred ccchHhhHHHHHHHhhHHHHHHhhccccCC--chhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 877777888899999999999988776533 245789999999999999999999999888999999999999999999
Q ss_pred CCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh-CCcccCH
Q 003608 238 PSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR-VGGYLPD 316 (808)
Q Consensus 238 ~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 316 (808)
|.+.+..|++.|..++|.|||||++-.++|+++||+++.+.. .+..|...|.. ..|.++..+++.++.-. ++.|++|
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~-~y~~f~~~f~t-~vp~il~tffkqie~wgqgqLWlsd 316 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKK-SYLSFYITFMT-RVPMILATFFKQIEEWGQGQLWLSD 316 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCeecch
Confidence 988777899999999999999999999999999998765433 45667777766 67899999999887744 4568999
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHH
Q 003608 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE 396 (808)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~ 396 (808)
..++....|+..|+..+.+|+.++||+.-++.++|+|.++++++++|.||+||+||+++..|.+++.+++..+|..++..
T Consensus 317 ~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~ 396 (970)
T COG5656 317 IELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLII 396 (970)
T ss_pred HHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcch
Q 003608 397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476 (808)
Q Consensus 397 l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~l 476 (808)
+..++++.+++.++.|+...+.++..+|.+.++.+..|||++.++++..-+++..+....++.|+.++|.|.++++..++
T Consensus 397 ~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL 476 (970)
T COG5656 397 SKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFL 476 (970)
T ss_pred HhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccch
Confidence 99999999999999999999988877776667899999999999999997777777777899999999999999999999
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhc
Q 003608 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 556 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~ 556 (808)
|+|||.+++.+ +..|++...+.++++...+||++++.+|++.|+.|++.|+.+....+.++.++|++|+.|+.+.++.+
T Consensus 477 ~Srace~is~~-eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe 555 (970)
T COG5656 477 KSRACEFISTI-EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE 555 (970)
T ss_pred HHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc
Confidence 99999999999 45788888899999999999999999999999999999998877889999999999999999999999
Q ss_pred hhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCC----CChhHHHHHHHHHHHHHHHHhhcCChHHH
Q 003608 557 NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDA----DDPGALAAVGCLRAISTILESVSRLPHLF 632 (808)
Q Consensus 557 ~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~----~~~~~~~~~~~l~~i~~li~~~~~~~~~~ 632 (808)
.+.+..+|+++|+.|++++.||+++++..|+.+|+++...-.++++| .+|+.+.+.|+++++.+++.+++..|.++
T Consensus 556 iD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vL 635 (970)
T COG5656 556 IDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVL 635 (970)
T ss_pred chHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 99999999999999999999999999999999999987643322211 25789999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhH-HhhhhhhhhhhhhhhccCcc
Q 003608 633 VQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWA-IDFFPNILVPLDNYISRGTA 711 (808)
Q Consensus 633 ~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~-~~~~~~~~~~L~~~i~~~~~ 711 (808)
..++..++|++..++.++..+|+.++++++...+..++.+.|.+|.+|+.+.+++.+.+ .+|+.+....+++|+.+|+.
T Consensus 636 k~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 636 KYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999986544 59999999999999999999
Q ss_pred cccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC-cccchHHHHHHHHHHHhh-chhhHHHHHHH
Q 003608 712 HFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRR-AEKSYLKCLLV 789 (808)
Q Consensus 712 ~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~~~l~~il~~~~~~l~~-~~~~~~~~~~~ 789 (808)
+|. +++.|.+.++++..+.+.++.....|...+|++++.++++++++ .+.|+|-+++.+-..+.. .+.+..++.++
T Consensus 716 ef~--~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~al 793 (970)
T COG5656 716 EFM--DAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYAL 793 (970)
T ss_pred ccc--cccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccccccchhhhHH
Confidence 988 67899999999999999876554467889999999999999997 788999888888766654 35668888999
Q ss_pred HHHHHhHhhChHHHHHhh
Q 003608 790 QVVSFHERANSDLSIIVI 807 (808)
Q Consensus 790 ~~i~~~~~~n~~~~~~~~ 807 (808)
+++++|++++|..|+|+|
T Consensus 794 eliinnli~~P~eTLqiL 811 (970)
T COG5656 794 ELIINNLILRPKETLQIL 811 (970)
T ss_pred HHHHHHHhcChHHHHHHH
Confidence 999999999999999986
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-77 Score=633.16 Aligned_cols=742 Identities=21% Similarity=0.346 Sum_probs=628.1
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCC
Q 003608 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (808)
Q Consensus 2 d~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l 81 (808)
|+++|.+.|+++++||+++|+.||+.|++++.+++|...+++++.+.+.|..+|..|+++|||+|+++|....+. +..+
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~-~~~i 81 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS-PIKI 81 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC-cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999986653 5689
Q ss_pred ChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHccc--
Q 003608 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF-- 156 (808)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~-- 156 (808)
.+++|+.||..++.+|.+++..|+.|++.+++.|+++|||++||+|+++++..++++ ...+.|.+-+.++|+|++
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef 161 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF 161 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999999999999999999999988 467888999999999985
Q ss_pred CCcCCcchHHHHHHHHhHHHHHHHHHHhcc---cCCCh----hHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003608 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQI---VNPSL----EVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229 (808)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~---~~~~~----~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (808)
|+++...+++..+..+-.++..+|.+.... ..++. ....++.+++|+|++++.+++|++++ ++++.||+.|
T Consensus 162 rSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFE--dnm~~wM~~F 239 (960)
T KOG1992|consen 162 RSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFE--DNMKTWMGAF 239 (960)
T ss_pred ccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHH--hhHHHHHHHH
Confidence 666666777778877777777777665422 11221 24577889999999999999999998 7999999999
Q ss_pred HHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003608 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309 (808)
Q Consensus 230 ~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~ 309 (808)
++.++...|.. ..|++ +..-+.++|..+|++++.+.++|.+ + +.+++|.|++..|+++...+
T Consensus 240 ~k~l~~~~p~l--e~~~e--e~~~l~~lka~ICEi~~LY~~kYeE------e--------f~~fl~~fv~~~W~LL~~~s 301 (960)
T KOG1992|consen 240 HKLLTYDNPLL--ESDEE--EATVLDKLKAQICEIFNLYATKYEE------E--------FQPFLPDFVTATWNLLVSTS 301 (960)
T ss_pred HHHHhccCccc--ccCcc--cccHHHHHHHHHHHHHHHHHHhhHH------H--------HHhhHHHHHHHHHHHHHhcC
Confidence 99999877732 22332 2445678999999999999888742 2 24578899999999997754
Q ss_pred CCcccCHHHHHHHHHHHHhhcCCchhhhhch--hhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHH
Q 003608 310 VGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPR 387 (808)
Q Consensus 310 ~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~--~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r 387 (808)
.. ...|-++..+++|++.+++.+.+...+. ..+.++++.+++|++.++++|+|.+||||.||+|++.++. |.+|+|
T Consensus 302 ~~-~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGs-DvdTRR 379 (960)
T KOG1992|consen 302 PD-TKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGS-DVDTRR 379 (960)
T ss_pred CC-ccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccC-CcchhH
Confidence 32 3357899999999999988776655664 3588999999999999999999999999999999998864 789999
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhh-------cCCcchHHHHHH
Q 003608 388 TASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK-------QTEPYKSELERM 460 (808)
Q Consensus 388 ~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~-------~~~~~~~~l~~~ 460 (808)
.+|.++++.|++++...+.+.+...++..+++|..+|. .||+.||.+++++.++|-.-. ..++ ..++..|
T Consensus 380 R~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS--~nWk~kd~aiyL~talaik~~t~~~Gvtstn~-lvdv~~F 456 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPS--GNWKKKDRAIYLVTALAIKGQTAKHGVTSTNE-LVDVVDF 456 (960)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCC--ccccccchhhhhhHHHHhhcchhhcceeeccc-cccHHHH
Confidence 99999999999999888888888999999999988885 599999999999999986632 2333 2367788
Q ss_pred HhhcccccccC----CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc----
Q 003608 461 LVQHVFPEFSS----PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---- 532 (808)
Q Consensus 461 l~~~v~~~l~~----~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~---- 532 (808)
+.+.++|+|.+ ++|+||+.++..+--|.... .++++-.+++.++..|..+..+|..+||.|++.++..++
T Consensus 457 f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql--~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~ 534 (960)
T KOG1992|consen 457 FANQILPDLLSPNVNEFPILKADAIKYIYTFRNQL--GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNA 534 (960)
T ss_pred HHHHhhHHhccCccccccchhhcccceeeeecccC--ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccc
Confidence 99999999985 47999999999985555433 347899999999999998889999999999999986553
Q ss_pred ---cccccccchHHHHHHHHHHhhhh---chhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 003608 533 ---DLNEIRPILPQLLDEFFKLMNEV---ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 606 (808)
Q Consensus 533 ---~~~~l~p~l~~ll~~l~~ll~~~---~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 606 (808)
.++.+.||+..++..|++.++.. +++.++.++..++....+.+.|+++.++.+|.+..++..+ || .
T Consensus 535 ~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~K----NP----s 606 (960)
T KOG1992|consen 535 KIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSK----NP----S 606 (960)
T ss_pred cccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhc----CC----C
Confidence 46788999999999999777543 4555888888888888899999999999999986666544 44 2
Q ss_pred hHHHHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC-CCCChhhhhhHHHHH
Q 003608 607 GALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMM 684 (808)
Q Consensus 607 ~~~~~~~~l~~i~~li~~~~-~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~-~~~~p~l~~~~~~l~ 684 (808)
++.+-++++|+++-+++..+ .+|....+++..++|+++.++.+|..+|+++++++++.++..+ +++++..+.+||.+.
T Consensus 607 ~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 607 NPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred CchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 45678899999999999875 4778888999999999999999999999999999999999865 568889999999876
Q ss_pred HHhhhh-HHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC-cc
Q 003608 685 EALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VD 762 (808)
Q Consensus 685 ~~~~~~-~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~ 762 (808)
.=- -| ..++++.++++|.+|+..|+..+.+. +.+..|++++.+++.++..+. +++.|+..++..++.. ++
T Consensus 687 sp~-lW~r~gNipalvrLl~aflk~g~~~~~~~---~~l~~iLGifqkLiaSka~Dh----~GF~LLn~i~~~~~~~~~~ 758 (960)
T KOG1992|consen 687 SPN-LWKRSGNIPALVRLLQAFLKTGSQIVEAA---DKLSGILGIFQKLIASKANDH----HGFYLLNTIIESIPPNELA 758 (960)
T ss_pred CHH-HHhhcCCcHHHHHHHHHHHhcCchhhccc---ccchhHHHHHHHHhcCcccch----hHHHHHHHHHhcCCHhhhh
Confidence 442 12 46689999999999999999987743 558889999999998877665 6999999999999876 89
Q ss_pred cchHHHHHHHHHHHhhchhhHHHHH
Q 003608 763 HWVEPYLRITVERLRRAEKSYLKCL 787 (808)
Q Consensus 763 ~~l~~il~~~~~~l~~~~~~~~~~~ 787 (808)
||+.+|+..+++|++++++..|...
T Consensus 759 py~k~i~~llf~RlqnskT~kf~k~ 783 (960)
T KOG1992|consen 759 PYMKQIFGLLFQRLQNSKTEKFVKS 783 (960)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHH
Confidence 9999999999999998765544433
No 4
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-71 Score=578.85 Aligned_cols=756 Identities=19% Similarity=0.264 Sum_probs=567.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhH
Q 003608 6 LALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (808)
Q Consensus 6 l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~ 85 (808)
++++|+++.|||..++|.||++|++|+++|||...|..|..+++.+..+|++|+|+|||.|.+||++.. ...+|+|+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~---~~sl~~EE 78 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNT---KMSLPPEE 78 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCC---cccCCHHH
Confidence 679999999999999999999999999999999999999999999999999999999999999999753 46799999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh-------hHHHHHHHHHHHHHHcccCC
Q 003608 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEFKS 158 (808)
Q Consensus 86 k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-------~~~~~L~~L~~i~~~~~~~~ 158 (808)
|+.||.+++..+.++++++..|.|.++++|||.|||.+||+|++++.+.+++. ..+++|.+|+.++|.+.++|
T Consensus 79 K~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~R 158 (978)
T KOG1993|consen 79 KDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKR 158 (978)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999886 36999999999999998866
Q ss_pred -cCCcchHHHHHHHHhHHHHHHHHHH--------hcccCCC--hhHHHHHHHHHHHhHHhhhhcCCcccCC--hhhHHHH
Q 003608 159 -DEERTPVYRIVEETFHHLLNIFNRL--------VQIVNPS--LEVADLIKLICKIFWSSIYLEIPKQLLD--PNVFNAW 225 (808)
Q Consensus 159 -~~~~~~~~~~~~~~~p~l~~~~~~~--------~~~~~~~--~~~~~~~~~~lk~~~~~~~~~~p~~~~~--~~~~~~~ 225 (808)
..+|+.|.+..+.+++.+..+.-+. ..++.+. ..+.+....++|.+|.++..+..+...+ .+.+..+
T Consensus 159 L~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F 238 (978)
T KOG1993|consen 159 LLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQF 238 (978)
T ss_pred HhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHH
Confidence 6678888888888888554433221 1111111 2345667789999999887654322111 1222333
Q ss_pred HHHHHHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCC-----ChhhHHHHHHHHHHhHHHHHHH
Q 003608 226 MILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQ-----NPENRAFAQMFQKNYAGKILEC 300 (808)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~-----~~~~~~f~~~f~~~~~~~~~~~ 300 (808)
+..-...+-.... ...+. -+ ...+.|.-+...+.+..++++. |... .+-..+|+-.++....+. +.
T Consensus 239 ~e~~~~~~~~~~s---~~~~~-vk-~di~ek~~i~l~K~l~~l~~rh--pfsF~~~~~~~~~l~f~~~yIf~~~~~-l~- 309 (978)
T KOG1993|consen 239 LELHQRKLLSSLS---TGTQS-VK-SDILEKFCIKLMKVLAFLFNRH--PFSFSFYSPCPVKLEFSIDYIFDEYDF-LG- 309 (978)
T ss_pred HHHHHHHHHhhcc---cccch-hh-hHHHHHHHHHHHHHHHHHhcCC--Ccccccccccceeeehhhhhhhcccch-hc-
Confidence 3221111111111 01111 00 0000111122334444455442 2110 011111222111100000 00
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhhcCC-------------------chhh-----hhc-hhhHHHHHHHHHhhcc
Q 003608 301 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISK-------------------NSMY-----NLL-QPRLDVLLFEIVFPLM 355 (808)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~-------------------~~~~-----~~~-~~~l~~li~~li~~~l 355 (808)
.. ......-++...+|+..+..++.. ..+. +.+ .+.+..++..++.+|+
T Consensus 310 -----~~-~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~Yf 383 (978)
T KOG1993|consen 310 -----QI-SGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYF 383 (978)
T ss_pred -----cc-ccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 00 000001123333333333321110 0000 111 3457889999999999
Q ss_pred cCChhhHhhhhcCHHHHHHHhccc-ccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCC-CCCcchhhH
Q 003608 356 CFNDNDQKLWDEDPHEYVRKGYDI-IEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETP-VEYKPYRQK 433 (808)
Q Consensus 356 ~l~~~d~e~w~~Dp~efv~~~~d~-~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~-~~~~~~~~~ 433 (808)
.+|++|.|+|.+||++|+.++..+ + .|+.|+||+.++..+.+.+++-.+++++..+.+..+...-.+ .+.++...|
T Consensus 384 lLt~~eLEeW~~dPE~~~~Eq~~~dw--ey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~K 461 (978)
T KOG1993|consen 384 LLTEEELEEWTQDPEGWVLEQSGGDW--EYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLK 461 (978)
T ss_pred hcCHHHHHHHhcChHHhhhhcccccc--eeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHH
Confidence 999999999999999999987642 3 388999999999999999999888888888877655431111 223467899
Q ss_pred HHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCC---cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 003608 434 DGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPV---GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (808)
Q Consensus 434 ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~---~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~ 510 (808)
||++.++|..++++.+.-| +..|+.+.++|++...+ .++|+|.+|.+|+|.+..++ .+....+|.++++.++
T Consensus 462 DAiYaa~g~~a~~l~~~~d----F~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~-~e~k~l~Y~a~lnLL~ 536 (978)
T KOG1993|consen 462 DAIYAAFGLAAYELSNILD----FDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQK-LELKPLLYCAFLNLLQ 536 (978)
T ss_pred HHHHHHHHHHHHHHHhcCC----HHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheech-HhHHHHHHHHHHHhcC
Confidence 9999999999999988654 66889999999998543 58999999999999986643 3678899999999999
Q ss_pred CC-CCchHHhHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhccccccchHHHHHH
Q 003608 511 DP-ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGEEMAPYALGLCQ 584 (808)
Q Consensus 511 ~~-~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~ll~~l~~ll~~~~~~~----l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (808)
|. |.+|+++|+.+++..+++++ .++.+.||++.+...+++++..++..+ +..+|++++++.++.|.||+..+++
T Consensus 537 d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq 616 (978)
T KOG1993|consen 537 DQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQ 616 (978)
T ss_pred ccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 87 89999999999999999998 889999999999999999998875532 7899999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccC---hhhHHHHHHHH
Q 003608 585 NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD---GQEVFEEVLEI 661 (808)
Q Consensus 585 ~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~---~~~~~e~~l~l 661 (808)
.+.. +|+..+. .++.++.++.++.+++.+++..+..+. +.++|+|+.+.++. ...+.||++++
T Consensus 617 ~lp~----LWe~s~~-------e~lLr~alL~~L~~lV~alg~qS~~~~---~fL~pVIel~~D~~sP~hv~L~EDgmeL 682 (978)
T KOG1993|consen 617 YLPL----LWEESEE-------EPLLRCALLATLRNLVNALGAQSFEFY---PFLYPVIELSTDPSSPEHVYLLEDGMEL 682 (978)
T ss_pred HHHH----HHhhhcc-------CcHHHHHHHHHHHHHHHHhccCCccch---HHHHHHHHHhcCCCCCceeehhhhHHHH
Confidence 8886 7776542 257899999999999999987665443 88999999999864 34789999999
Q ss_pred HHHhhhcCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCC
Q 003608 662 VSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 741 (808)
Q Consensus 662 l~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~ 741 (808)
|..++.+++.++|++..+||.+...++. .++.++.++.++++|+..+...|++ .|.+.+++.+.+.+.+-+ +.
T Consensus 683 W~~~L~n~~~l~p~ll~L~p~l~~~iE~-ste~L~t~l~Ii~sYilLd~~~fl~----~y~~~i~k~~~~~l~dvr--~e 755 (978)
T KOG1993|consen 683 WLTTLMNSQKLTPELLLLFPHLLYIIEQ-STENLPTVLMIISSYILLDNTVFLN----DYAFGIFKKLNDLLDDVR--NE 755 (978)
T ss_pred HHHHHhcccccCHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhccHHHHH----HHHHHHHHHHHHHHHHhh--HH
Confidence 9999999999999999999999999854 7999999999999999999888997 799999999999996433 33
Q ss_pred ccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhh-chhhHHHHHHHHHHHHhHhhChHHHHHhh
Q 003608 742 DIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVVSFHERANSDLSIIVI 807 (808)
Q Consensus 742 ~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~-~~~~~~~~~~~~~i~~~~~~n~~~~~~~~ 807 (808)
....++++++.+++.-+---.-+.+++++.++..+.. .+.+++....+.|+.+..+-||...+.++
T Consensus 756 gl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvl 822 (978)
T KOG1993|consen 756 GLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVL 822 (978)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHH
Confidence 3566788888888874411112566677777777654 57899999999999999999999988764
No 5
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=4e-60 Score=506.20 Aligned_cols=738 Identities=18% Similarity=0.285 Sum_probs=554.9
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCC-C-cC
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-N-EQ 78 (808)
Q Consensus 1 Md~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~-~-~~ 78 (808)
|+.+.+..+|.+++|||+++|.+||.+|++++.++||..+|.+++.++..+.+.||.|.|.||++|.+||+...+ + .+
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 567889999999999999999999999999999999999999999999889999999999999999999998765 3 34
Q ss_pred CCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHcc
Q 003608 79 QKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 155 (808)
Q Consensus 79 ~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~ 155 (808)
...+++.|..||+.|++.+.+++++||+..+++|+.||+.|||++||++++.+..+++++ .+|++|++|.++..+.-
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 448899999999999999999999999999999999999999999999999999999966 68999999999998751
Q ss_pred cCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCC----c-----ccCChhhHHHHH
Q 003608 156 FKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIP----K-----QLLDPNVFNAWM 226 (808)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p----~-----~~~~~~~~~~~~ 226 (808)
-+++..+.+...|.+..+|...... +. .........|.|+++..+--+ . .+. .+.+.+||
T Consensus 161 ------~ee~~~~~~~~l~~m~~~f~~~~~~---s~-~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~-s~~l~~~~ 229 (1005)
T KOG2274|consen 161 ------VEEMFFVGPVSLAEMYRIFALTIVY---SI-ITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFL-SQILNQFM 229 (1005)
T ss_pred ------HHHHhcccccchhhhhhhhhhcccc---ch-hHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1122233444566666666543221 11 111122225677766532100 0 000 13455566
Q ss_pred HHHHHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 003608 227 ILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLN 306 (808)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~ 306 (808)
..+...++.. +++ .|..+..++++++.+++.|.+ ...+ ++-.++..+|+.++
T Consensus 230 ~~l~h~l~~~--------~g~------~~~~~~eilk~~t~l~~nfp~--~~~~------------~~~~~~~~vw~~~~ 281 (1005)
T KOG2274|consen 230 DILEHPLQRN--------DGS------DFSLRMEILKCLTQLVENFPS--LINP------------FMMGMFSIVWQTLE 281 (1005)
T ss_pred HHHhhhhccc--------ccc------hHHHHHHHHHHHHHHHHhhHH--hhhH------------HHHhhhhHHHHHHH
Confidence 6555555442 211 256778899999999988743 2222 22223333444332
Q ss_pred hh------------h---C-------CcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhh
Q 003608 307 RI------------R---V-------GGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKL 364 (808)
Q Consensus 307 ~~------------~---~-------~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~ 364 (808)
+. . . ..+..+.++.+.++|++++++.....+-++..+.+++..++ -|++++++.++.
T Consensus 282 ~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~ 360 (1005)
T KOG2274|consen 282 KILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEV 360 (1005)
T ss_pred HHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHH
Confidence 20 0 0 01123578899999999999988888888778888888876 589999999999
Q ss_pred hhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCC--CCCCcchhhHHHHHHHHHH
Q 003608 365 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDET--PVEYKPYRQKDGALLAIGA 442 (808)
Q Consensus 365 w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~--~~~~~~~~~~ea~l~~lg~ 442 (808)
|..||++|+.++++. ++.|.++.+++..+...+|...+.++.+.....++...++ .++..+|+..++++.+.+.
T Consensus 361 w~sD~~~fV~dEd~~----~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~ 436 (1005)
T KOG2274|consen 361 WTSDVNQFVADEDDG----YTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAES 436 (1005)
T ss_pred HhccHHHhhccCCCC----chhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhh
Confidence 999999999987653 7889999999999999999888888887755555432211 1223589999999999988
Q ss_pred HHHHhhcCCcchHHHHHHHhhccccccc-CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHhH
Q 003608 443 LCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDS 520 (808)
Q Consensus 443 ~a~~l~~~~~~~~~l~~~l~~~v~~~l~-~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~-~~~~~V~~~A 520 (808)
...+ +..++.-..+...+...+. +..|++-.||+|++++|++...-+++.+..++...++.+. +..++++..|
T Consensus 437 ~~~~-----~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a 511 (1005)
T KOG2274|consen 437 VRID-----DANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISA 511 (1005)
T ss_pred cccC-----cchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHH
Confidence 7622 1222222333333433443 4568888899999999987643466788889999998886 5667899999
Q ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhcc--ccccch-HHHHHHHHHHHHHHHHhcc
Q 003608 521 VFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG--EEMAPY-ALGLCQNLAAAFWRCMNTA 597 (808)
Q Consensus 521 ~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~--~~i~p~-~~~l~~~L~~~~~~~~~~~ 597 (808)
++++..+| ....+.|++|.+++.|.++..+.+.+.+..+|+++...++ .+.+-- -..++......|.+ .
T Consensus 512 ~~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k----~ 583 (1005)
T KOG2274|consen 512 VRAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK----Y 583 (1005)
T ss_pred HHHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH----h
Confidence 99999988 3789999999999999999999888887666666654432 221111 11122222222322 2
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccCh----hhHHHHHHHHHHHhhhcCC-CC
Q 003608 598 EADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG----QEVFEEVLEIVSYMTFFSP-TI 672 (808)
Q Consensus 598 ~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~----~~~~e~~l~ll~~~~~~~~-~~ 672 (808)
.+|| ......-+++..+++ ..++++++.++++|.+-.+++.+. .....-++++++.++++.+ ++
T Consensus 584 s~DP-------~V~~~~qd~f~el~q----~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 584 SEDP-------QVASLAQDLFEELLQ----IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred cCCc-------hHHHHHHHHHHHHHH----HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 3344 223333444444444 456788899999999999998654 5788999999999999874 45
Q ss_pred Chhh-hhhHHHHHHH-hhhhHHhhhhhhhhhhhhhhccCcccccccCCch--HHHHHHHHHHHHhcCCCCCCCccCchhH
Q 003608 673 SLEM-WSLWPLMMEA-LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPD--YQQSLWSMVSSIMADKNLEDGDIEPAPK 748 (808)
Q Consensus 673 ~p~l-~~~~~~l~~~-~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~--~~~~l~~~~~~~l~~~~~~~~~~~~a~~ 748 (808)
+..+ -..||.++++ +++++-+.++..-++|.+|+..+++++++|++.+ .++.++++++++|+ +..+++.+.++|+
T Consensus 653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd-p~~sds~a~~VG~ 731 (1005)
T KOG2274|consen 653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD-PETSDSAAAFVGP 731 (1005)
T ss_pred cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC-CccchhHHHHHhH
Confidence 5544 4789999999 5677888999999999999999999999997754 36699999999995 6678888889999
Q ss_pred HHHHHHHHcCcCcccchHHHHHHHHHHHhhchhhHHHHHHHHHHHHhHhhChHHHHHhh
Q 003608 749 LIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVI 807 (808)
Q Consensus 749 ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~~~~i~~~~~~n~~~~~~~~ 807 (808)
++..++.+++..++|-++.|+.+++.|++..++..+.+.++-|++--.+-++..+++||
T Consensus 732 lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL 790 (1005)
T KOG2274|consen 732 LVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFL 790 (1005)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-54 Score=446.63 Aligned_cols=719 Identities=18% Similarity=0.247 Sum_probs=529.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhc-CcChhhHHHHHHHHHHHHhhccCCCCCCcCCCC
Q 003608 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDN-NCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (808)
Q Consensus 3 ~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~-~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l 81 (808)
++|+.++|+.+.|||+++|+.+..+|.|+...|+|..+|..|+.+. +.+..+|.+|+.+|||.|+.+|.. +
T Consensus 12 l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~--------~ 83 (885)
T KOG2023|consen 12 LQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNS--------I 83 (885)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccC--------C
Confidence 5789999999999999999999999999999999999999999864 568899999999999999999997 8
Q ss_pred ChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHcccC-
Q 003608 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK- 157 (808)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~- 157 (808)
+.+.+.+||+..+.++.++++.||...+.+|+.|+...+-..||+++|.+.+++.++ ..+||+.+|.+||++-...
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL 163 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH
Confidence 889999999999999999999999999999999999999999999999999999988 5699999999999975321
Q ss_pred -CcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003608 158 -SDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (808)
Q Consensus 158 -~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 236 (808)
++-.-++++ .+.|.+++++.+. +.+++..+++|++..+. ..+ +.+-.-+..|+..+-..
T Consensus 164 ds~~~~rpl~----~mipkfl~f~~h~---------spkiRs~A~~cvNq~i~-~~~------qal~~~iD~Fle~lFal 223 (885)
T KOG2023|consen 164 DSDVLTRPLN----IMIPKFLQFFKHP---------SPKIRSHAVGCVNQFII-IQT------QALYVHIDKFLEILFAL 223 (885)
T ss_pred hhhcccCchH----HhHHHHHHHHhCC---------ChhHHHHHHhhhhheee-cCc------HHHHHHHHHHHHHHHHH
Confidence 121223443 4567777777642 36788889999876542 112 22223333344333221
Q ss_pred CCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003608 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (808)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (808)
+.|++. .++|.+++.+.-+.+. .|..+ .++++.+++.+++... ...+
T Consensus 224 ------anD~~~-------eVRk~vC~alv~Llev--r~dkl------------~phl~~IveyML~~tq------d~dE 270 (885)
T KOG2023|consen 224 ------ANDEDP-------EVRKNVCRALVFLLEV--RPDKL------------VPHLDNIVEYMLQRTQ------DVDE 270 (885)
T ss_pred ------ccCCCH-------HHHHHHHHHHHHHHHh--cHHhc------------ccchHHHHHHHHHHcc------Ccch
Confidence 233332 5778899988877765 23222 2245667777665432 2356
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHH-HH-------HH--------------
Q 003608 317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPH-EY-------VR-------------- 374 (808)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~-ef-------v~-------------- 374 (808)
++...+.|||.+..+.+-....+.|++..++..+ ...|.++++|+-..+++.+ ++ ++
T Consensus 271 ~VALEACEFwla~aeqpi~~~~L~p~l~kliPvL-l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~ 349 (885)
T KOG2023|consen 271 NVALEACEFWLALAEQPICKEVLQPYLDKLIPVL-LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGED 349 (885)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHH-HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccc
Confidence 7899999999999999988888999999998865 4889999999877762222 11 11
Q ss_pred --Hh---cc--ccc---ccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHH
Q 003608 375 --KG---YD--IIE---DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC 444 (808)
Q Consensus 375 --~~---~d--~~~---d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a 444 (808)
++ +| +.+ ..|+.|+|++..|+.++..+|+++++.+++++.+.|.+ ++|+.|||+..++|++|
T Consensus 350 ~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--------~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 350 ADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--------EEWKVREAGVLALGAIA 421 (885)
T ss_pred cccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--------chhhhhhhhHHHHHHHH
Confidence 00 01 001 13899999999999999999999999999999998875 58999999999999999
Q ss_pred HHhhc-CCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHhHH
Q 003608 445 DKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSV 521 (808)
Q Consensus 445 ~~l~~-~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~V~~~A~ 521 (808)
+++.+ ..++...+ ..++++.|.+..|.+|..+||++|+|+.|.+..+ +++.++++.++..+-|.+..|+.+||
T Consensus 422 EGcM~g~~p~LpeL----ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAc 497 (885)
T KOG2023|consen 422 EGCMQGFVPHLPEL----IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAAC 497 (885)
T ss_pred HHHhhhcccchHHH----HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence 99877 33444333 3455667888999999999999999999876554 78999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccchHHHHHHHHHHhhhhc--------------------------------------------h
Q 003608 522 FALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE--------------------------------------------N 557 (808)
Q Consensus 522 ~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~--------------------------------------------~ 557 (808)
+|+..+-++ ..+.+.||+..|++.|...++.+. +
T Consensus 498 sAfAtleE~--A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~ 575 (885)
T KOG2023|consen 498 SAFATLEEE--AGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS 575 (885)
T ss_pred HHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc
Confidence 999999888 478999999999999987665421 0
Q ss_pred h----hHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHh---cccCCC-CCCChhHHHHHHHHHHHHHHHHhhcCCh
Q 003608 558 E----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMN---TAEADE-DADDPGALAAVGCLRAISTILESVSRLP 629 (808)
Q Consensus 558 ~----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~---~~~~d~-~~~~~~~~~~~~~l~~i~~li~~~~~~~ 629 (808)
+ .+..++++++..++..+.||+..+.+..+..+.+..+ ....++ .+.+|+.. ..-.++.++.++++++.+-
T Consensus 576 DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdf-iI~sLDL~SGLaegLg~~i 654 (885)
T KOG2023|consen 576 DKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDF-IIVSLDLLSGLAEGLGSHI 654 (885)
T ss_pred cchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcce-EEEeHHHHhHHHHHhhhch
Confidence 1 1677889999999999999999988887765543322 111122 12234432 2245889999999998755
Q ss_pred HHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC-CCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhh-hc
Q 003608 630 HLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNY-IS 707 (808)
Q Consensus 630 ~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~-~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~-i~ 707 (808)
+-+. ...-+..++-.|++.+..+..+.++.+++.+.+.+ ..+-|.+-.++|.+..-+.........+..-.+.-. +.
T Consensus 655 e~Lv-a~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k 733 (885)
T KOG2023|consen 655 EPLV-AQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALK 733 (885)
T ss_pred HHHh-hhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHH
Confidence 4321 12447888899998888999999999999999876 567777777777665333222122222222222211 22
Q ss_pred cCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhhchhhHHHHH
Q 003608 708 RGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCL 787 (808)
Q Consensus 708 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~ 787 (808)
.|.+ ...|+..++.-+--.++.+.....-....+-.++.+...+|..++|+++.++.-.+.++++-.+.+-|-.
T Consensus 734 ~g~~------~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~s 807 (885)
T KOG2023|consen 734 MGLK------MKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKES 807 (885)
T ss_pred hchh------hhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHH
Confidence 2222 2256666666555555544322222234556677888888999999999999999999987555555555
Q ss_pred HHHHHHHhHhhChHHHHH
Q 003608 788 LVQVVSFHERANSDLSII 805 (808)
Q Consensus 788 ~~~~i~~~~~~n~~~~~~ 805 (808)
.+-.+|..+--||....+
T Consensus 808 AFrG~c~mi~vNp~~vv~ 825 (885)
T KOG2023|consen 808 AFRGLCNMINVNPSGVVS 825 (885)
T ss_pred HHHHHHHheeeCchhhhh
Confidence 556667777777776554
No 7
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-51 Score=450.49 Aligned_cols=668 Identities=18% Similarity=0.286 Sum_probs=474.2
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCC
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (808)
Q Consensus 1 Md~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~ 80 (808)
||.+++.|++++.+||||++|++||+.|+....++.-...|.+++.+ +.++++||+|+|.+|+.+.++|+.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~-------- 71 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSR-------- 71 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhc--------
Confidence 88999999999999999999999999999766665677888888876 558999999999999999999997
Q ss_pred CChhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHccc
Q 003608 81 ISQVDKDMVRDHILVFV-AQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (808)
Q Consensus 81 l~~e~k~~ir~~ll~~l-~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~ 156 (808)
+++|.|+.||+.|+.++ .++.+.||+++|.+|+.||+.+.|++||+|++.+++..+|+ ..+.|+++|..+...+.
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~- 150 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG- 150 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc-
Confidence 99999999999999987 68899999999999999999999999999999999999988 46889999999987652
Q ss_pred CCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 003608 157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236 (808)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~ 236 (808)
+. ...+++.++.+|.+.++.++ ..++..+++.+.....+ ++..-...+.+...+|.++.+++..
T Consensus 151 ---~~-------~~~~~~~l~~lf~q~~~d~s-----~~vr~~a~rA~~a~~~~-~~~~~~~~~~~~~llP~~l~vl~~~ 214 (1075)
T KOG2171|consen 151 ---NT-------LQPHLDDLLRLFSQTMTDPS-----SPVRVAAVRALGAFAEY-LENNKSEVDKFRDLLPSLLNVLQEV 214 (1075)
T ss_pred ---cc-------cchhHHHHHHHHHHhccCCc-----chHHHHHHHHHHHHHHH-hccchHHHHHHHHHhHHHHHHhHhh
Confidence 11 12367778888888876443 22666677777654432 1100011256666777777777654
Q ss_pred CCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 003608 237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD 316 (808)
Q Consensus 237 ~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (808)
++ .+|+ +.-+.+++.+..+.+.. |+ ++++++..+++..+++..+ ..+.+
T Consensus 215 i~----~~d~---------~~a~~~l~~l~El~e~~--pk------------~l~~~l~~ii~~~l~Ia~n----~~l~~ 263 (1075)
T KOG2171|consen 215 IQ----DGDD---------DAAKSALEALIELLESE--PK------------LLRPHLSQIIQFSLEIAKN----KELEN 263 (1075)
T ss_pred hh----ccch---------HHHHHHHHHHHHHHhhc--hH------------HHHHHHHHHHHHHHHHhhc----ccccH
Confidence 32 2222 12256888888888763 33 3455667778888877754 35688
Q ss_pred HHHHHHHHHHHhhcCCchhh-hhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003608 317 RVTNLILQYLSNSISKNSMY-NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (808)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~-~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~ 395 (808)
.+++.+++|+.++.+.++.. +...+...+++..++ . ++++.+ +| +||...++.+.+|..++...|.+.++
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l-~--~mte~~-----~D-~ew~~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLL-A--MMTEEE-----DD-DEWSNEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHH-H--hcCCcc-----cc-hhhccccccccccccCcHHHHHHHHH
Confidence 99999999999998874322 222222334433322 2 233332 12 45554433222345778889999999
Q ss_pred HHHHhcc-cchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCc
Q 003608 396 ELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVG 474 (808)
Q Consensus 396 ~l~~~~~-~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~ 474 (808)
.++.+.| +.+++++++++.+++++ .+|+.|.|++++++++++|+.+. +..++++++ +.|++.|++|||
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S--------~~w~~R~AaL~Als~i~EGc~~~--m~~~l~~Il-~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQS--------TEWKERHAALLALSVIAEGCSDV--MIGNLPKIL-PIVLNGLNDPHP 403 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHcccHHH--HHHHHHHHH-HHHHhhcCCCCH
Confidence 9999985 78899999999999876 59999999999999999999874 344677765 578999999999
Q ss_pred chhhHHHHHHHhhhccccCCh---hHHHHHHHHHHhcCCCC-CCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 003608 475 HLRAKAAWVAGQYAHINFSDQ---NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (808)
Q Consensus 475 ~lr~~a~~~l~~~~~~~~~~~---~~~~~~~~~ll~~l~~~-~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ 550 (808)
+||.+||.++||++. .|.+. .++..+.++++..+.++ +++|+.+|+.|+-+|.+.+ .++.+.||++.+|+..+.
T Consensus 404 rVr~AA~naigQ~st-dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMST-DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-DKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred HHHHHHHHHHHhhhh-hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999987 34433 35667777888888875 5689999999999999998 599999999999997666
Q ss_pred Hhhhhch----hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc
Q 003608 551 LMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS 626 (808)
Q Consensus 551 ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~ 626 (808)
.+.+.+. +.++.+|.+++...++.+.||.+.++..|.+ .+.+..+ .|....+...++|++.+..+++
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~----~L~n~~~-----~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN----FLQNADD-----KDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH----HHhCCCc-----hhhHHHHhhHHHHHHHHHHHhh
Confidence 6654333 3478899999999999999999999998886 4443331 1345678888999999999998
Q ss_pred CChHHHHHHHhhHHHHHHHHcc---cChhhHHHHHHHHHHHhhh-cCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhh
Q 003608 627 RLPHLFVQIEPTLLPIMRRMLT---TDGQEVFEEVLEIVSYMTF-FSPTISLEMWSLWPLMMEALADWAIDFFPNILVPL 702 (808)
Q Consensus 627 ~~~~~~~~~~~~~~p~i~~~l~---~~~~~~~e~~l~ll~~~~~-~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L 702 (808)
+.+ +....+.++.++...-. .+.....++.+..|..+.+ ..+.+.|.+..++|.+++.
T Consensus 553 ke~--F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~t---------------- 614 (1075)
T KOG2171|consen 553 KEK--FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKT---------------- 614 (1075)
T ss_pred hhh--hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHh----------------
Confidence 522 22222333332222211 1122345555555555554 2344455544444444444
Q ss_pred hhhhccCccccccc-------CCchHHHHHHHHHHH-HhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHH
Q 003608 703 DNYISRGTAHFLTC-------KEPDYQQSLWSMVSS-IMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVE 774 (808)
Q Consensus 703 ~~~i~~~~~~~l~~-------~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~ 774 (808)
....|+...-+ ++....+.+ ..-.+ .++-.+..-.++..|+..+..+...+++.+.||+.+.+...+.
T Consensus 615 ---a~~~p~~~~~d~~d~e~~~~~~~~e~~-~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~ 690 (1075)
T KOG2171|consen 615 ---ARLDPDVALSDEEDEEEEQDLDGWEVV-ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVP 690 (1075)
T ss_pred ---hccCCcccCcCchhhhhccccccchhh-ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 33333322211 000111111 11011 1221122222356789999999999999999999999997777
Q ss_pred HHhh
Q 003608 775 RLRR 778 (808)
Q Consensus 775 ~l~~ 778 (808)
.+.-
T Consensus 691 ~l~f 694 (1075)
T KOG2171|consen 691 LLKF 694 (1075)
T ss_pred HHHh
Confidence 7654
No 8
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=8.3e-48 Score=413.84 Aligned_cols=730 Identities=18% Similarity=0.229 Sum_probs=498.4
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCC
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (808)
Q Consensus 1 Md~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~ 80 (808)
|+..+....+..+.|+|+..++.||+.|+||++++||...|.+|..+.+.+.++|+.|+|+|||+|++||++.. ...
T Consensus 1 M~~~~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~---~~~ 77 (947)
T COG5657 1 MEDLPVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREEN---GNS 77 (947)
T ss_pred CCchHHHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhc---ccC
Confidence 77677777888999999999999999999999999999999999999888999999999999999999999643 245
Q ss_pred CChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHcccC
Q 003608 81 ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFK 157 (808)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~ 157 (808)
+.++++..||+.++.++.+.++.+.-|.|.|++.||+.|||++||+|++++.+.+++. ...+.|.+++.++|+++ +
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r-~ 156 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR-R 156 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh-h
Confidence 6667788999999999999999999999999999999999999999999999999986 56899999999999986 2
Q ss_pred CcCCcchHHHHHHHHhHHHHHHHHHHhcccC------CC-hhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHH
Q 003608 158 SDEERTPVYRIVEETFHHLLNIFNRLVQIVN------PS-LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFL 230 (808)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~------~~-~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 230 (808)
....++.|.++.+.+.+.+.++.-+....++ .+ .....+....+|.|+....++.|++++ ++++.||..|.
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfE--d~l~~~m~~F~ 234 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFE--DNLDKFMEHFC 234 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHH--HHHHHHHHHHH
Confidence 2333455667777776666665543322111 01 122333344556666666678887776 78999999999
Q ss_pred HHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhC
Q 003608 231 NVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRV 310 (808)
Q Consensus 231 ~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~ 310 (808)
+.++...|. ...| +.+.....++|..++.+++.+-.+|.. . +..+.-.+++.+|+.++...
T Consensus 235 klls~~~~~--lq~~--~le~~~~~~l~~~i~e~f~ly~t~yp~-------------~-it~li~dfv~~vw~~lttit- 295 (947)
T COG5657 235 KLLSYSNPV--LQKD--CLEDCVYFKLKGSICEIFNLYTTKYPE-------------V-ITYLIYDFVEIVWNLLTTIT- 295 (947)
T ss_pred HHHhhcchh--hhhh--hcccceeeeecccHHHHHHHHhhccHH-------------H-hhHHHHHHHHHHHHHHHhhc-
Confidence 999864331 1111 111134568888889988888777642 1 12234567888899887753
Q ss_pred CcccCHHHHHHHHHHHHhhcC--Cchhhhhchh----hHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccC
Q 003608 311 GGYLPDRVTNLILQYLSNSIS--KNSMYNLLQP----RLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLY 384 (808)
Q Consensus 311 ~~~~~~~~~~~~l~fl~~~~~--~~~~~~~~~~----~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~ 384 (808)
+++.-|.++..++.++....+ .+.+.+.+.+ .+..++..++.|++.+.++|+|.|++||.||+++...... ..
T Consensus 296 ~~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dy-e~ 374 (947)
T COG5657 296 RPYIRDYLVSKSLTVLINVIKYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDY-EV 374 (947)
T ss_pred CccccchhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccc-hh
Confidence 346678889899999998887 5666665544 5678889999999999999999999999999997665321 36
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhc
Q 003608 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH 464 (808)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~ 464 (808)
..|.++.+.+....+.+++-..+.+...+. +....|......+.+++++...|...+.+... .++..++.+.
T Consensus 375 ~vr~~~~~~l~~~f~~~~~i~~~~~~~~ie----~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~----~~~v~~~~~~ 446 (947)
T COG5657 375 NVRPCIENELKDLFDVFGRIAVGHELTVIE----SEATTPNILDEARQLFAAYASFGLGVEAVNRM----VDFVKFLGSI 446 (947)
T ss_pred hhhHHHHHHHHHHHHHHhhHhHHHHHHHHH----HHhcCchHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHh
Confidence 679999999999999888544555555444 43334532346788889888888665555442 3456778888
Q ss_pred ccccccCC----Cc-chhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCC-CCchHHhHHHHHHHHHHhcc-ccc
Q 003608 465 VFPEFSSP----VG-HLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACR-DLN 535 (808)
Q Consensus 465 v~~~l~~~----~~-~lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~ll~~l~~~-~~~V~~~A~~al~~~~~~~~-~~~ 535 (808)
..|++.++ ++ ++|+|+..++..+.... +.+ +.---.++..+..+.+. +..+-.+...|-...+++++ ...
T Consensus 447 ~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~-~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~ 525 (947)
T COG5657 447 IYPDLLSPNEIIHLRILRSRIAYILTFRNQLD-SSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC 525 (947)
T ss_pred cCccccCcccCceeEEehhccchheechhhhh-hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc
Confidence 88988764 33 45666666666655432 222 11111122233333322 33344455556666666654 222
Q ss_pred ccccchHHHHHHHHHHhhhhch----hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHH
Q 003608 536 EIRPILPQLLDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAA 611 (808)
Q Consensus 536 ~l~p~l~~ll~~l~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~ 611 (808)
...+.+++++-.+.+++...+. +.++.+++.++..-++.+.|.+.++++.|.+ +|.....|| ..+.+.
T Consensus 526 ~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~----lv~~~~knp----s~p~~~ 597 (947)
T COG5657 526 SKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDN----LVEINAKNP----SNPQFA 597 (947)
T ss_pred cccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHH----HHHHHccCC----ccHHHH
Confidence 3444555555555555554433 3378889999999999999999999988886 555444455 245567
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChh-hHHHHHHHHHHHhhhcCCCCChhhhh-hHHHHHHHhhh
Q 003608 612 VGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFSPTISLEMWS-LWPLMMEALAD 689 (808)
Q Consensus 612 ~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~-~~~e~~l~ll~~~~~~~~~~~p~l~~-~~~~l~~~~~~ 689 (808)
++.++.++.++..... +.+...|.+...+.+... -+-|++.++|+.+++....++...-. .+|.+.+.+.+
T Consensus 598 h~~fe~I~al~~~~~~-------~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q 670 (947)
T COG5657 598 HYTFEDIGALVFLKSG-------MCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQ 670 (947)
T ss_pred HHHHHHHHHHHHhhhc-------ccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhc
Confidence 7888888888765432 224455555555554422 33466666666666543333332222 24444444321
Q ss_pred --hHHh------hhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC-
Q 003608 690 --WAID------FFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ- 760 (808)
Q Consensus 690 --~~~~------~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~- 760 (808)
.+.+ .+..+...+++.+..+++.|-+ .+.+.++.++++.+..+. .+ ..|......+..+..+
T Consensus 671 ~~~~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~----s~~~~vL~i~~~ll~~e~-~~----~~~f~~~~~v~~l~~~~ 741 (947)
T COG5657 671 PSLATELLPTKLEILKSYRLLDNPILTTGYIFKS----SGFQPVLGILQYLLGSEP-HD----ALCFLNLTVVETLYLEN 741 (947)
T ss_pred ccCchHHHHHHHHHHHHHHHHHhhhhcccccccc----cchhhhHHHHHHHHhcch-HH----HHHHhhHHHHHHhHHHH
Confidence 1222 3344455566666666665442 567788889999996543 33 3555556666655544
Q ss_pred -cccchHHHHHHHHHHHhhchhhHHHHHHH
Q 003608 761 -VDHWVEPYLRITVERLRRAEKSYLKCLLV 789 (808)
Q Consensus 761 -~~~~l~~il~~~~~~l~~~~~~~~~~~~~ 789 (808)
..+++..|.-.+++++++.++..+...++
T Consensus 742 i~~~~v~~i~~lll~rl~ns~~~r~v~~~i 771 (947)
T COG5657 742 IYEPYVNLIFVLLLSRLKNSKTERFVIKII 771 (947)
T ss_pred HHhhcHHHHHHHHHHHhhcccchHHHHHhh
Confidence 67899999999999998876555544443
No 9
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=2.9e-42 Score=359.92 Aligned_cols=349 Identities=26% Similarity=0.435 Sum_probs=271.3
Q ss_pred HHHHccc--CCcCCcchHHHHHHHHhHHHHHHHHHHhcc---cCCC----hhHHHHHHHHHHHhHHhhhhcCCcccCChh
Q 003608 150 LSRKYEF--KSDEERTPVYRIVEETFHHLLNIFNRLVQI---VNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPN 220 (808)
Q Consensus 150 i~~~~~~--~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~---~~~~----~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~ 220 (808)
|+|+|++ ++++...+++.+++.+..+++.++....+. ...+ ....+++++++|||++++.+++|++++ +
T Consensus 1 ifkr~r~~~~s~~l~~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~fe--d 78 (370)
T PF08506_consen 1 IFKRYRYQFRSDELYTEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFFE--D 78 (370)
T ss_dssp HHGGGTTS---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHHH--H
T ss_pred CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHHH--H
Confidence 5777775 566667788888888888888888765422 1111 235677899999999999999999886 7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHH
Q 003608 221 VFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 300 (808)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~ 300 (808)
++..||+.|..+|..+.|... ..|++ +..+++++|+|++++++++.++|.+ +.+++++.|++.
T Consensus 79 ~l~~wm~~f~~~L~~~~p~l~-~~d~~--e~~~l~kvK~~i~~~~~ly~~kY~e--------------~f~~~l~~fv~~ 141 (370)
T PF08506_consen 79 NLSEWMEIFHKYLTYPNPALE-EDDDD--EPGLLEKVKAWICENLNLYAEKYEE--------------EFEPFLPTFVQA 141 (370)
T ss_dssp THHHHHHHHHHHHH--SGGG--TT-SS--S--HHHHHHHHHHHHHHHHHHH-HH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccC-CCCcc--cccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 899999999999998876432 22222 3457899999999999999998742 234578889999
Q ss_pred HHHHHHhhhCCcccCHHHHHHHHHHHHhhcCCchhhhhc--hhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcc
Q 003608 301 HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYD 378 (808)
Q Consensus 301 ~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~--~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d 378 (808)
+|+++.+...+ +..|.++..+++|++++++.+.....+ ++++.+|++++|+|+|+++++|+|.||+||.||+|++.|
T Consensus 142 vw~lL~~~~~~-~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e 220 (370)
T PF08506_consen 142 VWNLLTKISQQ-PKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLE 220 (370)
T ss_dssp HHHHHTC--SS-GGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSC
T ss_pred HHHHHHHhhhc-ccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcc
Confidence 99999774433 346899999999999988776554455 578999999999999999999999999999999999988
Q ss_pred cccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhc-------CC
Q 003608 379 IIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ-------TE 451 (808)
Q Consensus 379 ~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~-------~~ 451 (808)
+ +|.+|+|.+|.+++..+++++++.+.+.+.+++++.+++|.++|. .+|+.||+|++++|+++..... .+
T Consensus 221 ~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~--~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~ 297 (370)
T PF08506_consen 221 G-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPS--NNWRSKDGALYLIGALASKGSTTKSGVTQTN 297 (370)
T ss_dssp S-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT--T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-
T ss_pred c-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCc--ccHHHHHHHHHHHHHHHhhhccccCCccccc
Confidence 6 578999999999999999999999999999999999998877664 5999999999999999987632 11
Q ss_pred cchHHHHHHHhhccccccc---CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHH
Q 003608 452 PYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFAL 524 (808)
Q Consensus 452 ~~~~~l~~~l~~~v~~~l~---~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al 524 (808)
+ ..++++|+.++|.|+|+ +.+|++|++||+++..|.... +.+.+..+++.++++|++++.+|+.+||.|+
T Consensus 298 ~-~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l--~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 298 E-LVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL--PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp T-TS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred c-cccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2 23789999999999998 468999999999999998864 5578899999999999999999999999886
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-38 Score=331.12 Aligned_cols=686 Identities=16% Similarity=0.234 Sum_probs=447.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCC---CcCC
Q 003608 5 SLALILQGALSPNPEERKAAEHSLNQFQY--TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP---NEQQ 79 (808)
Q Consensus 5 ~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~--~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~---~~~~ 79 (808)
++.++|..++|||+++|++||++|++++. -|+|...|.+++.+.+.+...|.+|++.|||.+...-...+. ..|.
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 45688889999999999999999999975 489999999999999899999999999999999765443221 2466
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCC-CCChhHHHHHHHHhchh-h---HHHHHHHHHHHHHHc
Q 003608 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-Q---VYGALFVLRILSRKY 154 (808)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~-~---~~~~L~~L~~i~~~~ 154 (808)
.++.|.|++||.+++..|..+.+..++..+.|++.||..+.| ++||+|+..+.....++ . ..++|.++..+|++.
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999999999999999 78999999999998776 2 378899999999875
Q ss_pred ccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCc-ccCChhhHHHHHHHHHHHh
Q 003608 155 EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QLLDPNVFNAWMILFLNVL 233 (808)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~l 233 (808)
. ++ .+... .-..|..++.-.... ..+..++..++++++.+.-. .. .|.++..-.-+| ++.
T Consensus 162 ~---pe---vl~~~---sN~iLtaIv~gmrk~----e~s~~vRLaa~~aL~nsLef--~~~nF~~E~ern~iM----qvv 222 (859)
T KOG1241|consen 162 D---PE---VLEQQ---SNDILTAIVQGMRKE----ETSAAVRLAALNALYNSLEF--TKANFNNEMERNYIM----QVV 222 (859)
T ss_pred C---HH---HHHHH---HhHHHHHHHhhcccc----CCchhHHHHHHHHHHHHHHH--HHHhhccHhhhceee----eee
Confidence 3 11 22222 222333333322221 12355677888888765421 11 111111111112 222
Q ss_pred cCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHH-HHHHHHHHHHhhhCCc
Q 003608 234 ERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK-ILECHLNLLNRIRVGG 312 (808)
Q Consensus 234 ~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~-~~~~~~~~l~~~~~~~ 312 (808)
... .+..|. +++..++.||.++...|-. |...|+.+ ++...+.-+.
T Consensus 223 cEa----tq~~d~---------~i~~aa~~ClvkIm~LyY~--------------~m~~yM~~alfaitl~amk------ 269 (859)
T KOG1241|consen 223 CEA----TQSPDE---------EIQVAAFQCLVKIMSLYYE--------------FMEPYMEQALFAITLAAMK------ 269 (859)
T ss_pred eec----ccCCcH---------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHc------
Confidence 110 111222 5667789999999887631 22222211 2222222221
Q ss_pred ccCHHHHHHHHHHHHhhcCCchh-----hhh----chh---h-HHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhccc
Q 003608 313 YLPDRVTNLILQYLSNSISKNSM-----YNL----LQP---R-LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDI 379 (808)
Q Consensus 313 ~~~~~~~~~~l~fl~~~~~~~~~-----~~~----~~~---~-l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~ 379 (808)
...|++..+++|||+++++..-- -+. .-| + ...-+.. +.|.+ ++... +.++|+
T Consensus 270 s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~-v~P~L------l~~L~-------kqde~~ 335 (859)
T KOG1241|consen 270 SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD-VVPVL------LELLT-------KQDEDD 335 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH-hhHHH------HHHHH-------hCCCCc
Confidence 24689999999999987653210 000 011 0 1111111 11211 11111 111122
Q ss_pred ccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHH
Q 003608 380 IEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 459 (808)
Q Consensus 380 ~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~ 459 (808)
.+|.|+|.++|+.+|.-+++..|+++++.+++|+.+.+++ ++|+.||++.+++|++-++-.... ...-+.+
T Consensus 336 d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~--------pdwr~reaavmAFGSIl~gp~~~~-Lt~iV~q 406 (859)
T KOG1241|consen 336 DDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQN--------PDWRNREAAVMAFGSILEGPEPDK-LTPIVIQ 406 (859)
T ss_pred ccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCC--------cchhhhhHHHHHHHhhhcCCchhh-hhHHHhh
Confidence 2456999999999999999999999999999999998875 699999999999999987743211 1111112
Q ss_pred HHhhcccccccCCCcchhhHHHHHHHhhhcccc---CChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc----
Q 003608 460 MLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF---SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---- 532 (808)
Q Consensus 460 ~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~---- 532 (808)
.+ +.++....++.-++|..+.|++|+.++... .+++++...++.++..|+| .+.|...+|+|+..+.+.+.
T Consensus 407 al-p~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 407 AL-PSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred hh-HHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhcc
Confidence 21 223334457788999999999999987542 2347899999999999987 56789999999999997763
Q ss_pred ---cccccccchHHHHHHHHHHhhhhc-hh-----hHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCC
Q 003608 533 ---DLNEIRPILPQLLDEFFKLMNEVE-NE-----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDA 603 (808)
Q Consensus 533 ---~~~~l~p~l~~ll~~l~~ll~~~~-~~-----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~ 603 (808)
..+...|+.+.|++.|++.....+ ++ ....+|..+|....+...|....+......-+.+.++....+.+|
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~d 564 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLAD 564 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 122455899999999999887654 33 267888888888877766655544443333233334321111110
Q ss_pred CChhHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHccc-ChhhHHHHHHHHHHHhhhcC-CCCChhhhhhH
Q 003608 604 DDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTT-DGQEVFEEVLEIVSYMTFFS-PTISLEMWSLW 680 (808)
Q Consensus 604 ~~~~~~~~~~~l~~i~~li~~~~~-~~~~~~~~~~~~~p~i~~~l~~-~~~~~~e~~l~ll~~~~~~~-~~~~p~l~~~~ 680 (808)
.....-..+-+..++..+++.++. .+++- +.++-.+-.+++. .+.-..|++|--++.++.+. +.+...+..+.
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~----d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~ 640 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKVGSDIREVS----DQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK 640 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccchhHH----HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 001112334567788888888764 23333 4555555555554 45566788887777777643 45555555555
Q ss_pred HHHHHHhhh-hHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCc
Q 003608 681 PLMMEALAD-WAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG 759 (808)
Q Consensus 681 ~~l~~~~~~-~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~ 759 (808)
|-+..-+.+ ....+....+.++....+-=.+.|+ .|...+++.+-+.|+++..+.+-+..+....+.|..+.+.
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~-----py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~ 715 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDIL-----PYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA 715 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH
Confidence 555444421 1122222222222222221123455 7888888888889988887777677889999999999999
Q ss_pred CcccchHHHHHHHHHHH
Q 003608 760 QVDHWVEPYLRITVERL 776 (808)
Q Consensus 760 ~~~~~l~~il~~~~~~l 776 (808)
++.+|+..++..+-+.=
T Consensus 716 ~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 716 DFEPYLEMVMPLLQQAS 732 (859)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88888888776554443
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.8e-33 Score=285.60 Aligned_cols=687 Identities=15% Similarity=0.181 Sum_probs=429.9
Q ss_pred CChHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCC-C-
Q 003608 1 MDLPSLALILQG-ALSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHE-P- 75 (808)
Q Consensus 1 Md~~~l~~~l~~-~ls~d~~~r~~Ae~~L~~~~~~--p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~-~- 75 (808)
|...+..++.++ .+|||+++|..||.+|.++++. ..|...|.+.+++.+..+.+|..|++.|||.+..+-.... +
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 666677766665 6999999999999999999864 3678889999999888999999999999999986544322 1
Q ss_pred -CcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCC-CCChhHHHHHHHHhchh----hHHHHHHHHHH
Q 003608 76 -NEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLRI 149 (808)
Q Consensus 76 -~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~----~~~~~L~~L~~ 149 (808)
..|..++.|.|++||...+++|.++.+.+.+..+..++.||+.+.| +.||+|+..++.....+ ....+|.++..
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 2466799999999999999999999999999999999999999999 68999999999988765 34677888888
Q ss_pred HHHHcccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003608 150 LSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229 (808)
Q Consensus 150 i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (808)
.|+.-. + + .++...--.+..++.-...++ ....++..++|++....-. .-..+..++.-.-+|+..
T Consensus 161 ~ces~~---P---e---~li~~sN~il~aiv~ga~k~e----t~~avRLaaL~aL~dsl~f-v~~nf~~E~erNy~mqvv 226 (858)
T COG5215 161 HCESEA---P---E---DLIQMSNVILFAIVMGALKNE----TTSAVRLAALKALMDSLMF-VQGNFCYEEERNYFMQVV 226 (858)
T ss_pred HhhccC---H---H---HHHHHhhHHHHHHHHhhcccC----chHHHHHHHHHHHHHHHHH-HHHhhcchhhhchhheee
Confidence 887421 1 1 233333344455554443322 2456788899998763211 011112222222233322
Q ss_pred HHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003608 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIR 309 (808)
Q Consensus 230 ~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~ 309 (808)
..+ .+..|+ .+...++.|++++..-|-+ | ++.+++..+-.+....
T Consensus 227 cea--------tq~~d~---------e~q~aafgCl~kim~LyY~--------------f----m~~ymE~aL~alt~~~ 271 (858)
T COG5215 227 CEA--------TQGNDE---------ELQHAAFGCLNKIMMLYYK--------------F----MQSYMENALAALTGRF 271 (858)
T ss_pred ehh--------ccCCcH---------HHHHHHHHHHHHHHHHHHH--------------H----HHHHHHHHHHHHHHHH
Confidence 211 112232 3556788999998876521 1 2223332222221110
Q ss_pred CCcccCHHHHHHHHHHHHhhcCCchhhhh----c-----hhh------HHHHHHHHHhhcccCChhhHhhhhcCHHHHHH
Q 003608 310 VGGYLPDRVTNLILQYLSNSISKNSMYNL----L-----QPR------LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVR 374 (808)
Q Consensus 310 ~~~~~~~~~~~~~l~fl~~~~~~~~~~~~----~-----~~~------l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~ 374 (808)
-+...|++..++.|||+++++..---.. + .+| ...++..++ .. .+ +
T Consensus 272 -mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL-~L----------L~-------~ 332 (858)
T COG5215 272 -MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELL-SL----------LE-------K 332 (858)
T ss_pred -hcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHH-HH----------HH-------h
Confidence 0123689999999999988764311100 0 000 112222211 11 11 1
Q ss_pred HhcccccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcch
Q 003608 375 KGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYK 454 (808)
Q Consensus 375 ~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~ 454 (808)
...|..+|.|++..+|..+|.-..+..|+.++.++++|+.+.+.+ ++|..||++.+++|++-++-.+. ..
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~--------~~w~nreaavmAfGSvm~gp~~~--~l 402 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS--------ESWANREAAVMAFGSVMHGPCED--CL 402 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC--------chhhhHHHHHHHhhhhhcCccHH--HH
Confidence 112223467999999999999999999999999999999988864 69999999999999987762220 11
Q ss_pred H-HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 455 S-ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 455 ~-~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
. -+.+.+ +-+..+.+++.-+++.++.||+|+.+++. ..+..++....++.+..+.| .+.+....+++..++.++
T Consensus 403 T~~V~qal-p~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 403 TKIVPQAL-PGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDH 480 (858)
T ss_pred HhhHHhhh-HHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHh
Confidence 1 111211 22333344677899999999999998753 22336788888888888876 345677888999999987
Q ss_pred cc-----cccccccchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhccc--
Q 003608 531 CR-----DLNEIRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAE-- 598 (808)
Q Consensus 531 ~~-----~~~~l~p~l~~ll~~l~~ll~~~~~~~-----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~-- 598 (808)
.. -+.-+.++-+.|++.|.+..+...+|. +..+|++++....+.+.|....+......-+-+.++..+
T Consensus 481 ~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~ 560 (858)
T COG5215 481 IAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI 560 (858)
T ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 53 244567888999999998877665553 678899999888887777555544433332222221111
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccC-hhhHHHHHHHHHHHhhhcC-CCCChhh
Q 003608 599 ADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFS-PTISLEM 676 (808)
Q Consensus 599 ~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~-~~~~~e~~l~ll~~~~~~~-~~~~p~l 676 (808)
-+-.|.-...-..+.++..+..+++.-+.+- ...+..++.++-.+++.. ..-..++.+--++.+..+. ..+....
T Consensus 561 l~~eD~~~~~elqSN~~~vl~aiir~~~~~i---e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~ 637 (858)
T COG5215 561 LATEDQLLVEELQSNYIGVLEAIIRTRRRDI---EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA 637 (858)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc---ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000011123445566666666544321 123345555555555543 2233345554444443211 2222223
Q ss_pred hhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHH
Q 003608 677 WSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQN 756 (808)
Q Consensus 677 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~ 756 (808)
-.+.|.+.+.++..+.......+.++......=.+.|. .|...+++.+.+.++++.....-...+..+.+.|..+
T Consensus 638 ~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~-----~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 638 SKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN-----IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 33344444444333334444444444333332123344 6778888888888887665444456678899999999
Q ss_pred cCcCcccchHHHHHHHHHH
Q 003608 757 CKGQVDHWVEPYLRITVER 775 (808)
Q Consensus 757 ~~~~~~~~l~~il~~~~~~ 775 (808)
.+..+.+|+..|+....+.
T Consensus 713 iga~F~~YL~~im~L~qqa 731 (858)
T COG5215 713 IGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 9988889998886654443
No 12
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.1e-21 Score=206.55 Aligned_cols=637 Identities=14% Similarity=0.181 Sum_probs=397.2
Q ss_pred hHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCC
Q 003608 3 LPSLALILQGALSP-NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (808)
Q Consensus 3 ~~~l~~~l~~~ls~-d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l 81 (808)
..++++++..++++ +.+....++++|.+++..|.-|..-..++... ....+|.++|+.|.-+|+++|.+ +
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~-k~~evqyFGAltL~~ki~~~~e~--------~ 76 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPD-KSSEVQYFGALTLHDKINTRWEE--------C 76 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCC-chhHHHHHhHHHHHHHHHhhhcc--------C
Confidence 46788889999986 78888899999999999998888777787654 45577999999999999999997 9
Q ss_pred ChhHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh-------h--HHHHHHHHHH
Q 003608 82 SQVDKDMVRDHILVFVA---QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-------Q--VYGALFVLRI 149 (808)
Q Consensus 82 ~~e~k~~ir~~ll~~l~---~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-------~--~~~~L~~L~~ 149 (808)
++++...++..++..+. ..++.|-++++..++..+-+.-|+.||+.+.+++..++.+ . ....|..|..
T Consensus 77 ~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~ 156 (982)
T KOG2022|consen 77 PANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSF 156 (982)
T ss_pred ChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhcc
Confidence 99999999999998772 3567788999999999999999999999999999999874 1 1222334433
Q ss_pred HHHHcccC------CcCCcchHHHHHHHHhHHHHHHHHHHhcccCCCh---hHHHHHHHHHHHhHHhhh-hcCCcccCCh
Q 003608 150 LSRKYEFK------SDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSL---EVADLIKLICKIFWSSIY-LEIPKQLLDP 219 (808)
Q Consensus 150 i~~~~~~~------~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~---~~~~~~~~~lk~~~~~~~-~~~p~~~~~~ 219 (808)
+-.+++.. +..-|.++.......++ ++...+..+.++. ...-....+++|+..++. ...|.
T Consensus 157 ~p~e~q~~~l~~t~~~~l~~eLak~~~~v~~----l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~----- 227 (982)
T KOG2022|consen 157 MPAEFQHVTLPLTRRSVLRGELAKFSENVIS----LLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG----- 227 (982)
T ss_pred CcHhhhhccchhHHHHHHHHHHHHHHHHHhH----HHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc-----
Confidence 33333321 11122233333333344 3344444333332 223445678899988775 34442
Q ss_pred hhHHHHHHHHHHHhcCCCCCCC-------------CCCCh------------hhhhhc---cchHHHHHHHHHHHHHHHH
Q 003608 220 NVFNAWMILFLNVLERPVPSEG-------------EPADP------------EQRKSW---GWWKVKKWTVHILNRLYTR 271 (808)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~-------------~~~d~------------~~~~~~---~~~~~k~~~~~~l~~l~~~ 271 (808)
.....|....+..+........ ...|+ ..+..+ -+|+.-.|.+.-.++....
T Consensus 228 ~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~ 307 (982)
T KOG2022|consen 228 MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQE 307 (982)
T ss_pred ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345565555555542111000 00110 000001 1122222333333333333
Q ss_pred hCCCCCCChhhHHHHH---HHHHHhHHHHHHHH------------HHHHH-hh-hCCcc-cCHHHHHHHHHHHHhhcCC-
Q 003608 272 FGDLKLQNPENRAFAQ---MFQKNYAGKILECH------------LNLLN-RI-RVGGY-LPDRVTNLILQYLSNSISK- 332 (808)
Q Consensus 272 ~~~~~~~~~~~~~f~~---~f~~~~~~~~~~~~------------~~~l~-~~-~~~~~-~~~~~~~~~l~fl~~~~~~- 332 (808)
+.+++...++-..|.. .+..+++|..+... .+.+. .+ ..|.| +.+.+-...+.||.+....
T Consensus 308 ~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei 387 (982)
T KOG2022|consen 308 EENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEI 387 (982)
T ss_pred HhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHH
Confidence 3333321222222332 22345556555544 11111 11 12333 4556677889999875321
Q ss_pred --------chhhhhch-hhHHHHHHHHHhhcccC-ChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHHhcc
Q 003608 333 --------NSMYNLLQ-PRLDVLLFEIVFPLMCF-NDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG 402 (808)
Q Consensus 333 --------~~~~~~~~-~~l~~li~~li~~~l~l-~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~ 402 (808)
+...+.++ +-+..+++..+ |.+.+ +++....|+.|.-| .+.+.|..-.+++...-..+|
T Consensus 388 ~~~~~e~~~~~~~i~~~qIy~qlvei~l-~K~~~Ps~e~~~~W~S~s~e----------~F~~YR~diSD~~~~~Y~ilg 456 (982)
T KOG2022|consen 388 MQTINETQQIKKQILSQQIYAQLVEILL-KKLALPSKEIWLSWSSDSRE----------QFESYRKDISDLLMSSYSILG 456 (982)
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHH-HHhcCCCHHHhccCCcchHH----------HHHHHHHHHHHHHHHHHHHHh
Confidence 11112233 55666666555 55554 55666677765422 234568888888888888888
Q ss_pred cchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc--CCCcchhhHH
Q 003608 403 KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVGHLRAKA 480 (808)
Q Consensus 403 ~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~--~~~~~lr~~a 480 (808)
+..+..+.+-+.+++...... +..|...|++++.+.++++.+.... ...+...+.. .+... .++|-+-+.+
T Consensus 457 d~ll~~L~~~l~q~~aa~d~~---p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~--~asik~S~~n~ql~~Ts 529 (982)
T KOG2022|consen 457 DGLLDFLIDTLEQALAAGDED---PDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFET--SASIKLSAPNPQLLSTS 529 (982)
T ss_pred HHHHHHHHHHHHHhhhccCCC---chHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHh--ccccccccCChhHHHHH
Confidence 777766666666666654333 3579999999999999999987753 2345555432 22322 3478888999
Q ss_pred HHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch---
Q 003608 481 AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN--- 557 (808)
Q Consensus 481 ~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~--- 557 (808)
.-++|.++.|.-.+|-++...++.+++.|+.+. -...|..+++++|+.| ++.+.||+.+++..+-..++....
T Consensus 530 s~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C--~~~L~py~d~~~a~~~e~l~~~~~~~S 605 (982)
T KOG2022|consen 530 SDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETC--PESLDPYADQFSAVCYEVLNKSNAKDS 605 (982)
T ss_pred HHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhh--hhhCchHHHHHHHHHHHHhcccccCch
Confidence 999999998865566788999999999997443 4567888899999998 799999999999999988876422
Q ss_pred --hhHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC------
Q 003608 558 --EDLVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL------ 628 (808)
Q Consensus 558 --~~l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~------ 628 (808)
..++..++.++.+.. +++..|...+++.+.+.+...+..+.+++ ++.+...-.+.+++++..++...
T Consensus 606 ~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~----e~~l~~~~~l~~iS~LftSL~~~~~~~d~ 681 (982)
T KOG2022|consen 606 DRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQ----ENHLRIAFQLNTISALFTSLINKKDIIDT 681 (982)
T ss_pred HHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence 226777777777776 44555888888777765555444333232 34444455688899998887321
Q ss_pred --h--H-------HHHHHHhhHHHHHHHHccc--ChhhHHHHHHHHHHHhhhc-CCCC-ChhhhhhHHHH
Q 003608 629 --P--H-------LFVQIEPTLLPIMRRMLTT--DGQEVFEEVLEIVSYMTFF-SPTI-SLEMWSLWPLM 683 (808)
Q Consensus 629 --~--~-------~~~~~~~~~~p~i~~~l~~--~~~~~~e~~l~ll~~~~~~-~~~~-~p~l~~~~~~l 683 (808)
| + ...++...++|+++++++- ...++.|-++.++..-++. .+++ .|.+.++++-+
T Consensus 682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi 751 (982)
T KOG2022|consen 682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFI 751 (982)
T ss_pred cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence 0 0 2235667889999998863 3346666666555433332 1334 34444555444
No 13
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.91 E-value=5.9e-20 Score=190.50 Aligned_cols=543 Identities=13% Similarity=0.186 Sum_probs=312.1
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCC
Q 003608 2 DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (808)
Q Consensus 2 d~~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l 81 (808)
|.+-+-++.+..+.||...++||++-|.+++..|+.|...-.|+.+. ..++.+..|...|...|++.|+- +
T Consensus 12 diallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S-~~pqskyiALs~LdklIttkWkl--------l 82 (1053)
T COG5101 12 DIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNS-KLPQSKYIALSLLDKLITTKWKL--------L 82 (1053)
T ss_pred CHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcc-cCcchhhhHHHHHHHHHHhhhhh--------C
Confidence 45567778888899999999999999999999999999988888764 46689999999999999999994 9
Q ss_pred ChhHHHHHHHHHHHHHh--cCChHHH-------HHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh-hH-HHHHHHHHHH
Q 003608 82 SQVDKDMVRDHILVFVA--QVPPLLR-------VQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-QV-YGALFVLRIL 150 (808)
Q Consensus 82 ~~e~k~~ir~~ll~~l~--~~~~~i~-------~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-~~-~~~L~~L~~i 150 (808)
|++.|..||.-+++.+. +++.++| +.+-.++..|++.|||.+||+++|++++..+.+ .+ ++.|.+|+.+
T Consensus 83 p~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLklL 162 (1053)
T COG5101 83 PEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLL 162 (1053)
T ss_pred CcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHHHh
Confidence 99999999999999874 3444444 567778899999999999999999999988776 33 4455555555
Q ss_pred HHHcccCCcCC-----cchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcC------C----cc
Q 003608 151 SRKYEFKSDEE-----RTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI------P----KQ 215 (808)
Q Consensus 151 ~~~~~~~~~~~-----~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~------p----~~ 215 (808)
.++.-.-+.++ ...++.-+..-||.++.++.+.+..+..+ ...+...-.+-+|-.++.++. - ..
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~-SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~~ 241 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDE-SLIEATLESLLRFLEWIPLDYIFETNIIELVLEH 241 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Confidence 44321112221 12234445556777778887777654311 011111111222222211100 0 00
Q ss_pred cCC-hhhHHHHHHHHHHHhcCC-CCCCCCCCChhhhhhccchHHH----HHHHH-HHHHHHHHhCCCCCCChhhHHHHHH
Q 003608 216 LLD-PNVFNAWMILFLNVLERP-VPSEGEPADPEQRKSWGWWKVK----KWTVH-ILNRLYTRFGDLKLQNPENRAFAQM 288 (808)
Q Consensus 216 ~~~-~~~~~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~k----~~~~~-~l~~l~~~~~~~~~~~~~~~~f~~~ 288 (808)
+.+ ++.-..-+..+..+...- .| +.+++-+|.......+- ....+ .-.++.+.||+....+..+ ...
T Consensus 242 f~s~pd~r~~tl~CLtEi~~L~~~p---q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~F---vq~ 315 (1053)
T COG5101 242 FNSMPDTRVATLSCLTEIVDLGRHP---QENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIF---VQK 315 (1053)
T ss_pred hccCCchhHHHHHHHHHHHhhccCc---ccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHH---HHH
Confidence 000 000011112222222110 12 11222222111111110 00000 0123455665543222221 111
Q ss_pred HHHHhHHHHHHHHHHHHHhhh--------C------CcccCHHHHHHHHHHHHhhcCC-------------chhh-----
Q 003608 289 FQKNYAGKILECHLNLLNRIR--------V------GGYLPDRVTNLILQYLSNSISK-------------NSMY----- 336 (808)
Q Consensus 289 f~~~~~~~~~~~~~~~l~~~~--------~------~~~~~~~~~~~~l~fl~~~~~~-------------~~~~----- 336 (808)
. ..++..+...+...++... . .+-...++..-++++|...+.. .+..
T Consensus 316 L-A~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~ 394 (1053)
T COG5101 316 L-AQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVG 394 (1053)
T ss_pred H-HHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhcccc
Confidence 0 1122223333333332210 0 0111346778889999765431 0100
Q ss_pred -------------hhchhh-HHHHHHH---HHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHH
Q 003608 337 -------------NLLQPR-LDVLLFE---IVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVR 399 (808)
Q Consensus 337 -------------~~~~~~-l~~li~~---li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~ 399 (808)
.-++.| +..++.+ +++-+| ..+|+.-.-++|..|-+|+...++ |....-.+...++..+..
T Consensus 395 s~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienM-vrPEEVliVendegEivRefvket-DtI~lYksmRevLvyLth 472 (1053)
T COG5101 395 SQAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENM-VRPEEVLIVENDEGEIVREFVKET-DTIELYKSMREVLVYLTH 472 (1053)
T ss_pred chhccCCcchhcccchHHHHHHHHHHHHHHHHHHcC-CCcceEEEEECCCcHHHHHHhccc-cHhHHHHHHhhHHHHHhh
Confidence 001122 3344433 233443 567777777888888888865443 344555666677777655
Q ss_pred hcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhc----ccccccCCCcc
Q 003608 400 KRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQH----VFPEFSSPVGH 475 (808)
Q Consensus 400 ~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~----v~~~l~~~~~~ 475 (808)
-.-.++-....+-+...+. +...+|.......+|+|++++.+.+... +.-+.+.++.. ......+....
T Consensus 473 L~v~Dte~~mi~Klarq~d------g~EWsw~nlNtLcWAIGSISGamsE~~E-krF~VnviKdLL~LcemKrgKdnKAV 545 (1053)
T COG5101 473 LIVDDTEKYMIGKLARQLD------GKEWSWNNLNTLCWAIGSISGAMSEVNE-KRFFVNVIKDLLALCEMKRGKDNKAV 545 (1053)
T ss_pred hhhhhHHHHHHHHHHHHhc------CCccchhhHhHHHHHHhcccchhhhHHH-HHHHHHHHHHHHHHHHHhhcCCcchh
Confidence 4323332223332222221 1236799999999999999999876432 11122222211 11112244568
Q ss_pred hhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc------cccccccchHHHHHHHH
Q 003608 476 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRPILPQLLDEFF 549 (808)
Q Consensus 476 lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~------~~~~l~p~l~~ll~~l~ 549 (808)
+.+..++++|||..+.-.+-.++..++..++..|+.....|+..||.++-.+...|+ ....-.|++..++..+-
T Consensus 546 vASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ 625 (1053)
T COG5101 546 VASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLP 625 (1053)
T ss_pred hecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhh
Confidence 888999999999875422336899999999999998888999999999999999985 23344688888888877
Q ss_pred HHhhhhchhh---HHHHHHHHHHh
Q 003608 550 KLMNEVENED---LVFTLETIVDK 570 (808)
Q Consensus 550 ~ll~~~~~~~---l~~~l~~iv~~ 570 (808)
+...+.+... ...+++-++..
T Consensus 626 ktT~dL~pqQ~htfYeAcg~vIse 649 (1053)
T COG5101 626 KTTGDLEPQQKHTFYEACGMVISE 649 (1053)
T ss_pred hhcccCChHHHhHHHHHHhHHHhc
Confidence 7665554433 44555555543
No 14
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.89 E-value=3.3e-22 Score=213.72 Aligned_cols=260 Identities=19% Similarity=0.329 Sum_probs=206.4
Q ss_pred cccccccchHHHHHHHHHHhhh---hchhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHH
Q 003608 533 DLNEIRPILPQLLDEFFKLMNE---VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (808)
Q Consensus 533 ~~~~l~p~l~~ll~~l~~ll~~---~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~ 609 (808)
.++.+.|++++++.+|+.++.. .++|.++.++..++..+++.+.|++..++++|..++..+.+ || .++.
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~k----NP----snP~ 87 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSK----NP----SNPR 87 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHT----S-------HH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh----CC----CCcc
Confidence 5788999999999999999976 46677999999999999999999999999999987766655 44 3678
Q ss_pred HHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCC--CCChhhhhhHHHHHHH
Q 003608 610 AAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP--TISLEMWSLWPLMMEA 686 (808)
Q Consensus 610 ~~~~~l~~i~~li~~~~-~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~--~~~p~l~~~~~~l~~~ 686 (808)
+.++++|+++.+++..+ .+++...++|+.++|.+..++++|..+|++++|++++.++...+ ++++.++++||.++.-
T Consensus 88 FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p 167 (435)
T PF03378_consen 88 FNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSP 167 (435)
T ss_dssp HHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSG
T ss_pred hhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCc
Confidence 89999999999999865 57778889999999999999999999999999999999999765 8888999999988765
Q ss_pred hhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC-cccch
Q 003608 687 LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWV 765 (808)
Q Consensus 687 ~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~~~l 765 (808)
---...++++.+.++|.+|+.+++..+.+. +.++.++.++++++.++..+ ..|++|++.++.++|.+ +.+|+
T Consensus 168 ~lWe~~gniPalvrLL~a~i~k~~~~i~~~---~~l~~iLgvFQkLi~sk~~D----~~gF~LL~~iv~~~p~~~l~~yl 240 (435)
T PF03378_consen 168 ALWERRGNIPALVRLLQAYIKKDPSFIVAN---NQLEPILGVFQKLIASKAND----HYGFDLLESIVENLPPEALEPYL 240 (435)
T ss_dssp GGGGSTTTHHHHHHHHHHHHHHHGGG-------S-CHHHHHHHHHHHT-TTCH----HHHHHHHHHHHHHS-HHHHGGGH
T ss_pred chhccCCCcCcHHHHHHHHHHhCchhhcch---hhHHHHHHHHHHHHCCCCcc----hHHHHHHHHHHHHCCHHHHHHHH
Confidence 311245689999999999999999998753 78999999999999877644 36999999999999986 89999
Q ss_pred HHHHHHHHHHHhhch-hhHHHHHHHHHHHHhHhhChHHHHHhh
Q 003608 766 EPYLRITVERLRRAE-KSYLKCLLVQVVSFHERANSDLSIIVI 807 (808)
Q Consensus 766 ~~il~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~n~~~~~~~~ 807 (808)
+.|+..+++||++.+ +++.+..+.-+-+.+..|+|...++.+
T Consensus 241 ~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~i 283 (435)
T PF03378_consen 241 KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTI 283 (435)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999865 555555554445566777888777654
No 15
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.1e-14 Score=152.90 Aligned_cols=503 Identities=14% Similarity=0.214 Sum_probs=286.4
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCC
Q 003608 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (808)
Q Consensus 4 ~~l~~~l~~~ls~--d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l 81 (808)
+.+.|++.++..| |++.|+||-+.+++++.+|+.|..+.+++.+.+.++.+|..+...|-..++..+++ .
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne--------~ 74 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNE--------A 74 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhcc--------C
Confidence 4677888888875 89999999999999999999999999999987788999999999999999877775 7
Q ss_pred ChhHHHHHHHHHHHHHh-----c----CChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh-h---HHHHHHHHH
Q 003608 82 SQVDKDMVRDHILVFVA-----Q----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGALFVLR 148 (808)
Q Consensus 82 ~~e~k~~ir~~ll~~l~-----~----~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-~---~~~~L~~L~ 148 (808)
+..+.+.||..+...+. . .+.-|+++++.+++.+.-.+||..||.++.++...++-+ + +.-=+++|.
T Consensus 75 nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvll 154 (980)
T KOG2021|consen 75 NLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLL 154 (980)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 77899999999998762 2 256799999999999999999999999999999998766 2 222344444
Q ss_pred HHHHHcc---c-CCcC-Cc--chHHHHH-HHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhh-hcCCcccCCh
Q 003608 149 ILSRKYE---F-KSDE-ER--TPVYRIV-EETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIPKQLLDP 219 (808)
Q Consensus 149 ~i~~~~~---~-~~~~-~~--~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~-~~~p~~~~~~ 219 (808)
.|=.+.. + ++++ .+ ..+++.+ ++..|.+.+.|.+.+....+.. ...+...++.|++++++ .++.- ..|+
T Consensus 155 aIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~-npgl~~~cLdc~g~fVSWIdInL-IaNd 232 (980)
T KOG2021|consen 155 AIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIV-NPGLINSCLDCIGSFVSWIDINL-IAND 232 (980)
T ss_pred HhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHhhhhhhhh-hhch
Confidence 4433332 1 2221 11 1233333 4467888888877665322211 13455667777766543 22211 0111
Q ss_pred h-------------hHHHHHHHHHHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHH
Q 003608 220 N-------------VFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFA 286 (808)
Q Consensus 220 ~-------------~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~ 286 (808)
. .-..-.+.++.+++... |+ ..|.+ .+..++...+.||.......+-.+|+
T Consensus 233 ~f~nLLy~fl~ieelR~aac~cilaiVsKkM-------kP-------~dKL~--lln~L~q~l~lfg~~s~dq~~d~df~ 296 (980)
T KOG2021|consen 233 YFLNLLYKFLNIEELRIAACNCILAIVSKKM-------KP-------MDKLA--LLNMLNQTLELFGYHSADQMDDLDFW 296 (980)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-------Ch-------hHHHH--HHHHHHHHHHHHhhhccccccCchHH
Confidence 1 00111122222332211 11 11111 22222222222211100000111222
Q ss_pred HHHHHH--------------------------hHHH---HHHHHHHHHHhhhCCcccCHHHHHHHHHHHHhhcCCchhhh
Q 003608 287 QMFQKN--------------------------YAGK---ILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYN 337 (808)
Q Consensus 287 ~~f~~~--------------------------~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~ 337 (808)
+++.+- .... .+..+++.+.. .....+.+++-.+..++...=+.+....
T Consensus 297 e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~--e~ddit~~ifpFlsdyl~~LKkl~~ls~ 374 (980)
T KOG2021|consen 297 ESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNN--EFDDITAKIFPFLSDYLAFLKKLKALSS 374 (980)
T ss_pred HHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 222110 0000 11111111111 0000111222222333332211121222
Q ss_pred hchhhHHHHHHHHHhhcccCChhhHhhhhcC-HHHHHHHhcccccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 003608 338 LLQPRLDVLLFEIVFPLMCFNDNDQKLWDED-PHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGI 416 (808)
Q Consensus 338 ~~~~~l~~li~~li~~~l~l~~~d~e~w~~D-p~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~ 416 (808)
.-+.++..++.. ++..+++ ++...|.+| +.. |+.+.....|+-=-.+++++...-++ .++..+.+.
T Consensus 375 ~qk~~l~~illa-i~kqicy--demy~nddn~tg~------EeEa~f~e~RkkLk~fqdti~~idps----l~l~~Ir~s 441 (980)
T KOG2021|consen 375 PQKVPLHKILLA-IFKQICY--DEMYFNDDNVTGD------EEEAFFEEVRKKLKNFQDTIVVIDPS----LFLNNIRQS 441 (980)
T ss_pred hhhccHHHHHHH-HHHHHhc--cHHhhcccCCCCc------hHHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHH
Confidence 223456666654 3455555 334456555 221 00011234566555555655543332 334455555
Q ss_pred hcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCC------cc-----hHHHHHHHhhcccccccCCCcchhhHHHHHHH
Q 003608 417 FKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE------PY-----KSELERMLVQHVFPEFSSPVGHLRAKAAWVAG 485 (808)
Q Consensus 417 l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~------~~-----~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~ 485 (808)
+++...+.. +.+|...|.|++.+-.++++++... +. ..+++.++.+.- ....+|+.++---+-.+-
T Consensus 442 lS~al~ns~-e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq--v~~h~h~lVqLlfmE~iv 518 (980)
T KOG2021|consen 442 LSAALMNSK-EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ--VLAHDHELVQLLFMELIV 518 (980)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc--cccCCchHHHHHHHHHHH
Confidence 544333322 2589999999999999999986421 11 113333333211 123578888888888888
Q ss_pred hhhccccCChhHHHHHHHHHHhc--CCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003608 486 QYAHINFSDQNNFRKALHSVVSG--LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (808)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~ll~~--l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll 552 (808)
+|..+.-.++++.+.++.+.+.. |++.+..||..|..-+.+|+... +..+.||++.+++.+-.++
T Consensus 519 RY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL--kkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 519 RYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL--KKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 88764322334556666666543 55678889999999999999874 7889999999999999998
No 16
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.6e-12 Score=146.57 Aligned_cols=515 Identities=17% Similarity=0.197 Sum_probs=310.6
Q ss_pred CCCHHHHHHHHHHHHHhh-----cCC-----ChHHHHHHHHHhcCcChhhHHH----HHHHHHHHHhhccCCCCCCcCCC
Q 003608 15 SPNPEERKAAEHSLNQFQ-----YTP-----QHLVRLLQIIVDNNCDLSVRQV----ASIHFKNFIAKNWAPHEPNEQQK 80 (808)
Q Consensus 15 s~d~~~r~~Ae~~L~~~~-----~~p-----~f~~~L~~i~~~~~~~~~vR~~----A~i~lKn~i~~~W~~~~~~~~~~ 80 (808)
++|+++|+-|--.++.+- +-+ .--..|+.++.+ +....||.. .|-..||-+...|.
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~-E~~~~vr~k~~dviAeia~~~l~e~WP--------- 117 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS-ETEPSVRHKLADVIAEIARNDLPEKWP--------- 117 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccccchH---------
Confidence 488889988866665543 211 233456666665 335567653 45556666655555
Q ss_pred CChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCCh----hHHHHHHHHhchh--hH-HHHHHHHHHHHHH
Q 003608 81 ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWP----HLLDWVKHNLQDQ--QV-YGALFVLRILSRK 153 (808)
Q Consensus 81 l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp----~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~ 153 (808)
.+-+.|+++..+++...|-..-.+++.+.. .+++.-. ++.+-+.+.++++ .+ ..+++++..++..
T Consensus 118 -------ell~~L~q~~~S~~~~~rE~al~il~s~~~-~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~ 189 (1075)
T KOG2171|consen 118 -------ELLQFLFQSTKSPNPSLRESALLILSSLPE-TFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEY 189 (1075)
T ss_pred -------HHHHHHHHHhcCCCcchhHHHHHHHHhhhh-hhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 466778888889999999988888888775 4665555 4555555555544 33 5567888888775
Q ss_pred cccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHh
Q 003608 154 YEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVL 233 (808)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l 233 (808)
.+ ++. ..-..+..+.|.+++++...+..++ ......++++|..+... .|+.+. +.+...+++.+.+.
T Consensus 190 ~~----~~~-~~~~~~~~llP~~l~vl~~~i~~~d-----~~~a~~~l~~l~El~e~-~pk~l~--~~l~~ii~~~l~Ia 256 (1075)
T KOG2171|consen 190 LE----NNK-SEVDKFRDLLPSLLNVLQEVIQDGD-----DDAAKSALEALIELLES-EPKLLR--PHLSQIIQFSLEIA 256 (1075)
T ss_pred hc----cch-HHHHHHHHHhHHHHHHhHhhhhccc-----hHHHHHHHHHHHHHHhh-chHHHH--HHHHHHHHHHHHHh
Confidence 43 111 1223455678888888888776543 22345556666554322 243333 56666677777766
Q ss_pred cCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhh-hC--
Q 003608 234 ERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRI-RV-- 310 (808)
Q Consensus 234 ~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~-~~-- 310 (808)
... ..|+ ..|..++.++..+.+. .|...+ . ..++.+.++..++..+... ..
T Consensus 257 ~n~------~l~~---------~~R~~ALe~ivs~~e~--Ap~~~k----~-----~~~~~~~lv~~~l~~mte~~~D~e 310 (1075)
T KOG2171|consen 257 KNK------ELEN---------SIRHLALEFLVSLSEY--APAMCK----K-----LALLGHTLVPVLLAMMTEEEDDDE 310 (1075)
T ss_pred hcc------cccH---------HHHHHHHHHHHHHHHh--hHHHhh----h-----chhhhccHHHHHHHhcCCcccchh
Confidence 531 2232 3445677777766553 222110 0 0112333333333332110 00
Q ss_pred ----------CcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccc
Q 003608 311 ----------GGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDII 380 (808)
Q Consensus 311 ----------~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~ 380 (808)
....+.....++++.+.....-+. +-|.+.+.+...+ .
T Consensus 311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~----v~p~~~~~l~~~l----------------------------~ 358 (1075)
T KOG2171|consen 311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ----VLPPLFEALEAML----------------------------Q 358 (1075)
T ss_pred hccccccccccccCcHHHHHHHHHHHHhcCChhh----ehHHHHHHHHHHh----------------------------c
Confidence 001234567778888876554322 1122111111111 0
Q ss_pred cccCCHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHH
Q 003608 381 EDLYSPRTASMDFVSELVRKRGK---ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (808)
Q Consensus 381 ~d~~s~r~~a~~ll~~l~~~~~~---~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l 457 (808)
...|.-|.+|.-.|..+.+.-++ +.++.+++.+...++. +..+.|.||+.++|.++..+.. .+
T Consensus 359 S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D--------phprVr~AA~naigQ~stdl~p------~i 424 (1075)
T KOG2171|consen 359 STEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND--------PHPRVRYAALNAIGQMSTDLQP------EI 424 (1075)
T ss_pred CCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC--------CCHHHHHHHHHHHHhhhhhhcH------HH
Confidence 12467899998888888765443 3456666666655543 4789999999999999877543 33
Q ss_pred HHHHhhcccccc----cC-CCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcC-CCCCCchHHhHHHHHHHHHH
Q 003608 458 ERMLVQHVFPEF----SS-PVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVE 529 (808)
Q Consensus 458 ~~~l~~~v~~~l----~~-~~~~lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~ll~~l-~~~~~~V~~~A~~al~~~~~ 529 (808)
.......+.|.| .+ .++.++..|+-++-.|++...++. .++..+++..+..| ++..+.|+..++.||....+
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 343444444443 23 478888888877777765432222 45666666444344 45677799999999999999
Q ss_pred hcccccccccchHHHHHHHHHHhhhhchhh-------HHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHhcccCCC
Q 003608 530 ACRDLNEIRPILPQLLDEFFKLMNEVENED-------LVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADE 601 (808)
Q Consensus 530 ~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~-------l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~ 601 (808)
.. .+.|.||.+.+|..|.+.+++.+.++ .+.+++.+..+.| +.+.|++.++++.+.. .- .+..+
T Consensus 505 AA--~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~----~~-~~~~~- 576 (1075)
T KOG2171|consen 505 AA--QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLE----LQ-GSDQD- 576 (1075)
T ss_pred HH--hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHh----hc-ccchh-
Confidence 85 79999999999999999999887543 2455555666655 8899999999988775 21 11111
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHc
Q 003608 602 DADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRML 647 (808)
Q Consensus 602 ~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l 647 (808)
+....+.+.+...+.+.+.++++ +.++-+.++|.+....
T Consensus 577 ----~dd~~~sy~~~~warmc~ilg~~---F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 577 ----DDDPLRSYMIAFWARMCRILGDD---FAPFLPVVMPPLLKTA 615 (1075)
T ss_pred ----hccccHHHHHHHHHHHHHHhchh---hHhHHHHHhHHHHHhh
Confidence 11224567888888888888854 3345566666655543
No 17
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.3e-13 Score=139.65 Aligned_cols=498 Identities=16% Similarity=0.235 Sum_probs=291.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHh---
Q 003608 22 KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA--- 98 (808)
Q Consensus 22 ~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~--- 98 (808)
..|..+|.++++.+..|..+-+++... .+.....+|+..+|++|++.... +|+.+....|+.++..+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~-~~~~~~~FaaqTlr~Ki~~~F~~--------Lp~~~~~slrdsl~thl~~l~ 72 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQK-CDVEALLFAAQTLRNKIQYDFSE--------LPPLTHASLRDSLITHLKELH 72 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHhhHHh--------cCcchhHHHHHHHHHHHHHHH
Confidence 468899999999999999988888764 79999999999999999999885 999999999998888763
Q ss_pred cCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh--hHHHHHHHHHHHHHHcccC-C---cCCcchHHHHHHHH
Q 003608 99 QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYEFK-S---DEERTPVYRIVEET 172 (808)
Q Consensus 99 ~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~i~~~~~~~-~---~~~~~~~~~~~~~~ 172 (808)
+.++.+++|++.+++.+|-+ +| +|.+.++++++..++. .+..-|.+|.-+-++.+.. + ..-|..+..-...-
T Consensus 73 ~~~~~i~tQL~vavA~Lal~-~~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~ 150 (559)
T KOG2081|consen 73 DHPDVIRTQLAVAVAALALH-MP-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQ 150 (559)
T ss_pred hCCchHHHHHHHHHHHHHHH-hH-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHh
Confidence 34449999999999999976 45 8999888988888766 3333333343333333221 1 11223333333333
Q ss_pred hHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhh-cCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhhhhh
Q 003608 173 FHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYL-EIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKS 251 (808)
Q Consensus 173 ~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~ 251 (808)
.+.++..+..+++..+ ......+..++|||.++... .+|.... ....+.+......++.. .. +.+..+
T Consensus 151 ~~~~L~~l~~lLe~~~--l~~~~~l~~Vl~~l~SWl~~~~~~~d~v--~a~~pLi~l~F~sl~~~---~l-he~At~--- 219 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSD--LKSSDDLEQVLRCLGSWLRLHVFPPDQV--LASFPLITLAFRSLSDD---EL-HEEATE--- 219 (559)
T ss_pred HHHHHHHHHHHHhhcC--CChhhHHHHHHHHHhhhhhhccCCHHHH--HhhhHHHHHHHHHcccc---hh-hHHHHH---
Confidence 4555556666665433 12355678889999988762 3332111 11112333333333310 00 000000
Q ss_pred ccchHHHHHHHHHHHHHHHH----------hCCCCCC-----------Chh-hHHHHHHHHHH---h-------HHHHHH
Q 003608 252 WGWWKVKKWTVHILNRLYTR----------FGDLKLQ-----------NPE-NRAFAQMFQKN---Y-------AGKILE 299 (808)
Q Consensus 252 ~~~~~~k~~~~~~l~~l~~~----------~~~~~~~-----------~~~-~~~f~~~f~~~---~-------~~~~~~ 299 (808)
.++..++....+ |..+... +.+ ....+..|.+- | ...++.
T Consensus 220 --------cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~ 291 (559)
T KOG2081|consen 220 --------CICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLR 291 (559)
T ss_pred --------HHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchh
Confidence 011111111000 0000000 000 11112222110 0 001111
Q ss_pred HHHHHHHhhhCCcccCHHHHHHHHHHHHhhcC------CchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHH
Q 003608 300 CHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS------KNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYV 373 (808)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~------~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv 373 (808)
.+-.++..+.. ...+++...+-||....+ ....+..++|++..++.-+. +..++.+ |.+..-++-
T Consensus 292 ~vellLl~~~h---~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~-~h~qlp~-~~~~l~Ee~---- 362 (559)
T KOG2081|consen 292 IVELLLLVAGH---NDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLK-RHVQLPP-DQFDLPEEE---- 362 (559)
T ss_pred HHHHHHHhccC---CchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHH-HHccCCC-ccccCccch----
Confidence 11111211111 134788889999987644 23445677888888887544 6666655 222221111
Q ss_pred HHhcccccccCCHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCc
Q 003608 374 RKGYDIIEDLYSPRTASMDFVSELVRKRGKE-NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP 452 (808)
Q Consensus 374 ~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~-~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~ 452 (808)
+++...|...++++.++.--.|+. ++... ...+.+ ++..|...||+++.+..++..+....+
T Consensus 363 -------~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~----~~~l~e------~~~~We~~EAaLF~l~~~~~~~~~~e~ 425 (559)
T KOG2081|consen 363 -------SEFFEFRLKVGDVLKDVAFIIGSDECLKQM----YIRLKE------NNASWEEVEAALFILRAVAKNVSPEEN 425 (559)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHhCcHHHHHHH----HHHHcc------CCCchHHHHHHHHHHHHHhccCCcccc
Confidence 233446888899999998887753 33222 223322 135899999999999999988765321
Q ss_pred chHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc
Q 003608 453 YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 453 ~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (808)
..++..+.. +. .+..+.| +|+.++..+|.|++|.-++++.+..+...+...++... ....|+.|+..++..+
T Consensus 426 --~i~pevl~~-i~-nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c- 497 (559)
T KOG2081|consen 426 --TIMPEVLKL-IC-NLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC- 497 (559)
T ss_pred --chHHHHHHH-Hh-CCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH-
Confidence 223343332 21 1222334 99999999999999976677888999999998887654 7888889999999887
Q ss_pred cccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhcc-ccccchHHHHHH
Q 003608 533 DLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG-EEMAPYALGLCQ 584 (808)
Q Consensus 533 ~~~~l~p~l~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~-~~i~p~~~~l~~ 584 (808)
.....+.++.+..-...+.+...+++ +...++.++.+.. +++.+...+++.
T Consensus 498 -~~~~~~l~~~~~~l~~~l~~~~~~~e~a~l~~~~s~i~~~lp~~k~~~~~~el~~ 552 (559)
T KOG2081|consen 498 -RVQMTCLIPSLLELIRSLDSTQINEEAACLLQGISLIISNLPAHKAKIALEELCE 552 (559)
T ss_pred -HHHhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHhhhhHHHHHHhh
Confidence 56666666666655544444332222 4555566666654 344444444443
No 18
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.4e-11 Score=130.20 Aligned_cols=358 Identities=15% Similarity=0.140 Sum_probs=237.9
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC-ChhHHHHHHHHHHh
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS-DQNNFRKALHSVVS 507 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~-~~~~~~~~~~~ll~ 507 (808)
+|..|...-.+++.++..+.+. ..+.+-++|+. .|.++.=.+|-++...+|..++--.+ -..+++.+++.+++
T Consensus 368 dWNLRkCSAAaLDVLanvf~~e--lL~~l~PlLk~----~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~ 441 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDE--LLPILLPLLKE----HLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS 441 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHH--HHHHHHHHHHH----HcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 4999988888999888776542 22233344433 33344557899999999999873211 12578999999999
Q ss_pred cCCCCCCchHHhHHHHHHHHHHhcc---cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchHHHHHH
Q 003608 508 GLRDPELPVRVDSVFALRSFVEACR---DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQ 584 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~---~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (808)
+|.|..+.||.-+|++|.++....- ..+.++|.+..++..++.--+.+ .|....+..++.+..++++.||...+.+
T Consensus 442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~V-QEAAcsAfAtleE~A~~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKV-QEAACSAFATLEEEAGEELVPYLEYILD 520 (885)
T ss_pred HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 9999999999999999999975431 22344444444444433322221 2346667777777778888888888888
Q ss_pred HHHHHHHHHHhcc------------------cCCCC----------------CCChhHHHHHHHHHHHHHHHHhhcCCh-
Q 003608 585 NLAAAFWRCMNTA------------------EADED----------------ADDPGALAAVGCLRAISTILESVSRLP- 629 (808)
Q Consensus 585 ~L~~~~~~~~~~~------------------~~d~~----------------~~~~~~~~~~~~l~~i~~li~~~~~~~- 629 (808)
.|+.+|.++-..+ -+++. .|+|+.++ -+++|++.+..++++.-
T Consensus 521 ~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf--PLLEClSsia~AL~~gF~ 598 (885)
T KOG2023|consen 521 QLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF--PLLECLSSIASALGVGFL 598 (885)
T ss_pred HHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH--HHHHHHHHHHHHHhcccc
Confidence 7776664431110 00000 12345544 58999999999997521
Q ss_pred HHHHHHHhhHHHHHHHHccc------------ChhhHHHHHHHHHHHhhhcC-CCCChhhh--hhHHHHHHHhhhhHHhh
Q 003608 630 HLFVQIEPTLLPIMRRMLTT------------DGQEVFEEVLEIVSYMTFFS-PTISLEMW--SLWPLMMEALADWAIDF 694 (808)
Q Consensus 630 ~~~~~~~~~~~p~i~~~l~~------------~~~~~~e~~l~ll~~~~~~~-~~~~p~l~--~~~~~l~~~~~~~~~~~ 694 (808)
.......++.+.+++++++. ...+|+--++++++.+++.. ..+.|.+. .+...++.|+.+.-.++
T Consensus 599 P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peV 678 (885)
T KOG2023|consen 599 PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEV 678 (885)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHH
Confidence 11122336666777766541 12378888999999998864 34444433 46777888887767888
Q ss_pred hhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHH
Q 003608 695 FPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVE 774 (808)
Q Consensus 695 ~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~ 774 (808)
.++.+.+|..+.....+.+. .++...+.++..-++... .+.++.|+..++.+..+++....+++++++..++.
T Consensus 679 RQS~FALLGDltk~c~~~v~-----p~~~~fl~~lg~Nl~~~~--isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~ 751 (885)
T KOG2023|consen 679 RQSAFALLGDLTKACFEHVI-----PNLADFLPILGANLNPEN--ISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLIT 751 (885)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHhhcCChhh--chHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH
Confidence 99999999888888777766 677777777776664433 34468899999999999999999999999999999
Q ss_pred HHhhch-hhHHHHHHHHHHHHhHhhChHH
Q 003608 775 RLRRAE-KSYLKCLLVQVVSFHERANSDL 802 (808)
Q Consensus 775 ~l~~~~-~~~~~~~~~~~i~~~~~~n~~~ 802 (808)
-++.+. .+.+.-..--+|-.-=+++|+.
T Consensus 752 iin~~~~~~tllENtAITIGrLg~~~Pe~ 780 (885)
T KOG2023|consen 752 IINRQNTPKTLLENTAITIGRLGYICPEE 780 (885)
T ss_pred HhcccCchHHHHHhhhhhhhhhhccCHHh
Confidence 888653 3333333233344444455543
No 19
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.6e-09 Score=114.22 Aligned_cols=675 Identities=14% Similarity=0.190 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHHhh--cCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCc------------CCCCCh
Q 003608 18 PEERKAAEHSLNQFQ--YTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNE------------QQKISQ 83 (808)
Q Consensus 18 ~~~r~~Ae~~L~~~~--~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~------------~~~l~~ 83 (808)
...|..|--+||.-- +.|.--..+.+--. +.+.++|. +.|+.+.+.-....++. -..+|.
T Consensus 51 ~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl--~l~~e~re----qVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~ 124 (859)
T KOG1241|consen 51 DVARMAAGLQLKNSLTAKDPERKQQYQQRWL--QLPAEIRE----QVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQ 124 (859)
T ss_pred HHHHHHHhHHHhhhhccCCHHHHHHHHHHHH--cCCHHHHH----HHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCch
Confidence 457888888888643 34443332222222 35566665 45666665555322110 124666
Q ss_pred hHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhhCCC----CChhHHHHHHHHhchh----h-HHHHHHHHHH---H
Q 003608 84 VDKDMVRDHILVFVAQ-VPPLLRVQLGECLKTIIHADYPE----QWPHLLDWVKHNLQDQ----Q-VYGALFVLRI---L 150 (808)
Q Consensus 84 e~k~~ir~~ll~~l~~-~~~~i~~~~~~~i~~Ia~~d~p~----~Wp~ll~~l~~~l~s~----~-~~~~L~~L~~---i 150 (808)
..-..+-..+.....+ +...++.....+++.|...--|+ +-.+.+..|++-.... . ...|+.+|+- +
T Consensus 125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef 204 (859)
T KOG1241|consen 125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEF 204 (859)
T ss_pred hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHH
Confidence 6666666666666643 44479999999999988765564 3445555666655443 2 2344444433 3
Q ss_pred HH-HcccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHH
Q 003608 151 SR-KYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229 (808)
Q Consensus 151 ~~-~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~ 229 (808)
.+ .|. .+..|.. ++. .. ++ ..+.+ -.+++..++.|+..+.... -+.+..+|..-
T Consensus 205 ~~~nF~--~E~ern~---iMq----vv---cE-atq~~-----d~~i~~aa~~ClvkIm~Ly-------Y~~m~~yM~~a 259 (859)
T KOG1241|consen 205 TKANFN--NEMERNY---IMQ----VV---CE-ATQSP-----DEEIQVAAFQCLVKIMSLY-------YEFMEPYMEQA 259 (859)
T ss_pred HHHhhc--cHhhhce---eee----ee---ee-cccCC-----cHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 33 221 1222221 111 11 11 11111 1455666666765543210 13444555431
Q ss_pred H--HHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCC--CCCChhhHHHHHHHHHHhHHHHHHHHHHHH
Q 003608 230 L--NVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDL--KLQNPENRAFAQMFQKNYAGKILECHLNLL 305 (808)
Q Consensus 230 ~--~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~--~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l 305 (808)
+ -.+..-- ...|+-......+|.. ++.-=..+...|+.. +...|. +.+|-+.-++.++..+++.+
T Consensus 260 lfaitl~amk----s~~deValQaiEFWst---iceEEiD~~~e~~e~~d~~~~p~----~~~fa~~a~~~v~P~Ll~~L 328 (859)
T KOG1241|consen 260 LFAITLAAMK----SDNDEVALQAIEFWST---ICEEEIDLAIEYGEAVDQGLPPS----SKYFARQALQDVVPVLLELL 328 (859)
T ss_pred HHHHHHHHHc----CCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCch----hhHHHHHHHhHhhHHHHHHH
Confidence 1 1222110 0112111112233331 222112232233221 111222 22344444556666677777
Q ss_pred Hhhh----CCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhccccc
Q 003608 306 NRIR----VGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIE 381 (808)
Q Consensus 306 ~~~~----~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~ 381 (808)
.+.. ...|.+.+...-|+..+.+++... |+++++ | |+.+... .
T Consensus 329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~------------Iv~~Vl-~------------------Fiee~i~--~ 375 (859)
T KOG1241|consen 329 TKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD------------IVPHVL-P------------------FIEENIQ--N 375 (859)
T ss_pred HhCCCCcccccCcHHHHHHHHHHHHHHHhccc------------chhhhH-H------------------HHHHhcC--C
Confidence 6532 233555577778888888887643 223322 3 2222221 1
Q ss_pred ccCCHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHH
Q 003608 382 DLYSPRTASMDFVSELVRKRGKENLQ----KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (808)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~~~~~~~----~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l 457 (808)
+.|-.|.+|.-.+..+.+......+. ..++.+...+.. +....|+++-+.+|.+++.+.+...-..++
T Consensus 376 pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D--------~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l 447 (859)
T KOG1241|consen 376 PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD--------PSLWVKDTAAWTLGRIADFLPEAIINQELL 447 (859)
T ss_pred cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC--------chhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence 24667888887777777665433222 222333333321 233444999999999999987632212222
Q ss_pred HHHHhhcccccccCCCcchhhHHHHHHHhhhccc----cCC----h--hHHHHHHHHHHhcCC--C-CCCchHHhHHHHH
Q 003608 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN----FSD----Q--NNFRKALHSVVSGLR--D-PELPVRVDSVFAL 524 (808)
Q Consensus 458 ~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~----~~~----~--~~~~~~~~~ll~~l~--~-~~~~V~~~A~~al 524 (808)
.+.+ ..++..| ..+|++...+||.+--+++.. ..+ + .++..++..++..-+ | .+.-.|.+|-.||
T Consensus 448 ~~~l-~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 448 QSKL-SALLEGL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred hHHH-HHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 2322 2222233 467999999999998776421 111 1 245666666665532 2 3456899999999
Q ss_pred HHHHHhcccccccc----cchHHHHHHHHHHhhh-----hch------h-hHHHHHHHHHHhccccccchHHHHHHHHHH
Q 003608 525 RSFVEACRDLNEIR----PILPQLLDEFFKLMNE-----VEN------E-DLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 525 ~~~~~~~~~~~~l~----p~l~~ll~~l~~ll~~-----~~~------~-~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
..++..+ ++... .....++.+|-+.++. .+- . -+..+|+.++++++.++.+++..++..+..
T Consensus 526 mElIk~s--t~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflr 603 (859)
T KOG1241|consen 526 MELIKNS--TDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLR 603 (859)
T ss_pred HHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 9999886 34433 3444555555555541 111 1 167889999999999998888888776554
Q ss_pred HHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccCh-----------------
Q 003608 589 AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG----------------- 651 (808)
Q Consensus 589 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~----------------- 651 (808)
+++.... .....-.+-++++++.+++..- .+..+.+.|++...+++..
T Consensus 604 ----i~~s~~s--------~~v~e~a~laV~tl~~~Lg~~F---~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r 668 (859)
T KOG1241|consen 604 ----IFESKRS--------AVVHEEAFLAVSTLAESLGKGF---AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR 668 (859)
T ss_pred ----HHcCCcc--------ccchHHHHHHHHHHHHHHhHhH---HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 5544111 1112245667788888887543 4455889999988885421
Q ss_pred ---hhHHHHHHHHHHHhhhcC------CCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhc--cCccc--------
Q 003608 652 ---QEVFEEVLEIVSYMTFFS------PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYIS--RGTAH-------- 712 (808)
Q Consensus 652 ---~~~~e~~l~ll~~~~~~~------~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~--~~~~~-------- 712 (808)
.++..++=.+++.+++.. ..+.|.+...|..|.-.++.+...|+..+++.|.+--. .++..
T Consensus 669 aL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd 748 (859)
T KOG1241|consen 669 ALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVD 748 (859)
T ss_pred HHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHH
Confidence 145555556666665531 46778888889888877777667788877777665331 11100
Q ss_pred ------------cccc-C-------CchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcc-cchH-HHHH
Q 003608 713 ------------FLTC-K-------EPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVD-HWVE-PYLR 770 (808)
Q Consensus 713 ------------~l~~-~-------~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~-~~l~-~il~ 770 (808)
++++ + ..+|+..+++++.++-..+..++.-...+..+++.+...+|+.+. -+++ +.+.
T Consensus 749 ~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~ 828 (859)
T KOG1241|consen 749 ELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLDEDWIK 828 (859)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcchHHHH
Confidence 0000 0 126788888888888776666555456778999999999997632 2333 3334
Q ss_pred HHHHH---HhhchhhHHHHHHHHHHHH
Q 003608 771 ITVER---LRRAEKSYLKCLLVQVVSF 794 (808)
Q Consensus 771 ~~~~~---l~~~~~~~~~~~~~~~i~~ 794 (808)
..+++ ....+++....|..+.+=.
T Consensus 829 ~~L~~~~k~~~~~tK~~A~wa~e~ikr 855 (859)
T KOG1241|consen 829 DFLNEGRKSSTQKTKDLARWATEEIKR 855 (859)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 34433 3334677777777776543
No 20
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.3e-09 Score=126.09 Aligned_cols=172 Identities=17% Similarity=0.331 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCC
Q 003608 4 PSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (808)
Q Consensus 4 ~~l~~~l~~~ls~--d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l 81 (808)
.++.+++..+++| ++..|.+|.+.+.+++..|+-+...-.|+... ....+|.+|..+|-+.|+.+|+. +
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s-~~~~~k~f~Lqlle~vik~~W~~--------~ 80 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLS-TNPILKYFALQLLENVIKFRWNS--------L 80 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhcc-CCchhheeeHHHHHHHHHHhccc--------C
Confidence 4577777777775 68899999999999999999888777788764 46789999999999999999997 9
Q ss_pred ChhHHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh--hHHHHHHHHHHH
Q 003608 82 SQVDKDMVRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRIL 150 (808)
Q Consensus 82 ~~e~k~~ir~~ll~~l~~---------~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~i 150 (808)
|.++|..+|..++..+.. +.+.++.+++.++..|++.|||+.||++++++.+....+ ....++.+++.+
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLL 160 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHH
Confidence 999999999999988631 245688999999999999999999999999999998776 234455555555
Q ss_pred HHHcc-cCCcC---Cc-chHHHHHHHHhHHHHHHHHHHh
Q 003608 151 SRKYE-FKSDE---ER-TPVYRIVEETFHHLLNIFNRLV 184 (808)
Q Consensus 151 ~~~~~-~~~~~---~~-~~~~~~~~~~~p~l~~~~~~~~ 184 (808)
.+++- +.+.. .+ ..++..+...|..+.+++....
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~ 199 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIK 199 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55442 11111 11 2234444445666666666543
No 21
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.40 E-value=8.2e-13 Score=107.09 Aligned_cols=75 Identities=36% Similarity=0.602 Sum_probs=65.9
Q ss_pred HHHHHHHhhcC-CChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHh
Q 003608 24 AEHSLNQFQYT-PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVA 98 (808)
Q Consensus 24 Ae~~L~~~~~~-p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~ 98 (808)
||++|++++++ |||+.+|++++.+++.+..+|++|+++|||.|+++|+......+..+|+++|..||+.|+++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 9999999999988888999999999999999999999321112334999999999999999874
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.29 E-value=1.9e-06 Score=90.49 Aligned_cols=374 Identities=14% Similarity=0.162 Sum_probs=220.8
Q ss_pred ccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003608 382 DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (808)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l 461 (808)
+.|-.|.+|.-.+..+.+...+..+.++.+-....+....+. ...-.|+.+-+++|.+++++.+..+-..++....
T Consensus 378 ~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D----~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 378 ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD----SCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc----ceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 356778888877887776655544433333111111111111 2345677777789999999876322122333332
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccC---C-hhHHHHHHHHHHhcCC------CCCCchHHhHHHHHHHHHHhc
Q 003608 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---D-QNNFRKALHSVVSGLR------DPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 462 ~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~---~-~~~~~~~~~~ll~~l~------~~~~~V~~~A~~al~~~~~~~ 531 (808)
...++ .+ -.+|++...++|..-.+.++..+ . +..+...|+.++..|- +.+.-.|.++..||.+++.-+
T Consensus 454 sa~li-Gl-~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 454 SASLI-GL-MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred HHHHh-hh-hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 22111 12 25799999999998877664311 1 2345556666655541 344557889999999999876
Q ss_pred ccccccccchHH----HHHHHHHHhhhhc----------hh----hHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q 003608 532 RDLNEIRPILPQ----LLDEFFKLMNEVE----------NE----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRC 593 (808)
Q Consensus 532 ~~~~~l~p~l~~----ll~~l~~ll~~~~----------~~----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~ 593 (808)
++.+.+.+.. ++.+|-..++..+ .+ .+..++++++.+.+..+.|..+.++..+ .|+
T Consensus 532 --~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf----~r~ 605 (858)
T COG5215 532 --PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELF----IRI 605 (858)
T ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH----HHH
Confidence 4444443333 3333333332111 11 2578899999999999999887777644 456
Q ss_pred HhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccCh-------------------hhH
Q 003608 594 MNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-------------------QEV 654 (808)
Q Consensus 594 ~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~-------------------~~~ 654 (808)
++.. ++ .....-++-+|+.+..++++.-+ +..+.+.|++...++... .+|
T Consensus 606 les~--~~------t~~~~dV~~aIsal~~sl~e~Fe---~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df 674 (858)
T COG5215 606 LEST--KP------TTAFGDVYTAISALSTSLEERFE---QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDF 674 (858)
T ss_pred Hhcc--CC------chhhhHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhH
Confidence 6643 22 12234567888888888875444 445889999888885311 145
Q ss_pred HHHHHHHHHHhhhc------CCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhh------------------------
Q 003608 655 FEEVLEIVSYMTFF------SPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDN------------------------ 704 (808)
Q Consensus 655 ~e~~l~ll~~~~~~------~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~------------------------ 704 (808)
..++=.+++.+++- ...+.|.+...|..|.-.++.....|+..++.++..
T Consensus 675 ~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v 754 (858)
T COG5215 675 NIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLV 754 (858)
T ss_pred HHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHH
Confidence 55555555655542 146678888888888777665555666665544333
Q ss_pred ---hhccCccccccc--CCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC-cc-----cchHHHHHHHH
Q 003608 705 ---YISRGTAHFLTC--KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VD-----HWVEPYLRITV 773 (808)
Q Consensus 705 ---~i~~~~~~~l~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~-----~~l~~il~~~~ 773 (808)
|+-.+... .+. .-.+|+..+|+.+..+-.+++.+++....+..|++.+...+|.. +. +|+.+++....
T Consensus 755 ~~ayVgI~~~~-~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpkgelk~~~~~dWv~d~l~~~~ 833 (858)
T COG5215 755 NCAYVGIGDSS-KNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPKGELKFGLDEDWVKDFLYGMM 833 (858)
T ss_pred HHHHHHhhhhh-hhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCCcchhhccchHHHHHHHHHHH
Confidence 32222110 000 00157777777777666666665554457789999999998853 43 46667777777
Q ss_pred HHHhhc
Q 003608 774 ERLRRA 779 (808)
Q Consensus 774 ~~l~~~ 779 (808)
+++.++
T Consensus 834 ~ki~sq 839 (858)
T COG5215 834 KKISSQ 839 (858)
T ss_pred HHhhhh
Confidence 766654
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.24 E-value=1e-05 Score=90.05 Aligned_cols=611 Identities=13% Similarity=0.158 Sum_probs=320.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-Hhhc---------CCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCc
Q 003608 8 LILQGALSPNPEERKAAEHSLN-QFQY---------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNE 77 (808)
Q Consensus 8 ~~l~~~ls~d~~~r~~Ae~~L~-~~~~---------~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~ 77 (808)
++++...|+|.+-|==|..-|. ++++ .+.....+++.+.+ .+.+|+.+|.=.+--.+++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D--~ngEVQnlAVKClg~lvsK--------- 77 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED--KNGEVQNLAVKCLGPLVSK--------- 77 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHhh---------
Confidence 7888888999998888866554 4442 35567788888876 3567888887666555532
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCC----CCChhHHHHHHHHhchh-----h----HHHHH
Q 003608 78 QQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP----EQWPHLLDWVKHNLQDQ-----Q----VYGAL 144 (808)
Q Consensus 78 ~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p----~~Wp~ll~~l~~~l~s~-----~----~~~~L 144 (808)
++++.-..+-++|...+.+...+.|---+..+......--| .--|+.++.+.+.+.+. . ..-+|
T Consensus 78 ---vke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~l 154 (1233)
T KOG1824|consen 78 ---VKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVL 154 (1233)
T ss_pred ---chHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 77788888999999887666555554334333333333323 23355555555555443 1 13345
Q ss_pred HHHHHHHHHcccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHH
Q 003608 145 FVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNA 224 (808)
Q Consensus 145 ~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~ 224 (808)
..+..+..+|.. +++.+.+.++....-.++. ....+++.++-++.++..+. + .+.+..
T Consensus 155 Dil~d~lsr~g~-----------ll~~fh~~il~~l~~ql~s-----~R~aVrKkai~~l~~la~~~-~-----~~ly~~ 212 (1233)
T KOG1824|consen 155 DILADVLSRFGT-----------LLPNFHLSILKCLLPQLQS-----PRLAVRKKAITALGHLASSC-N-----RDLYVE 212 (1233)
T ss_pred HHHHHHHHhhcc-----------cCcchHHHHHHHHhhcccC-----hHHHHHHHHHHHHHHHHHhc-C-----HHHHHH
Confidence 555555555432 2333333333333222221 23567888888887765431 2 244555
Q ss_pred HHHHHHHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHH
Q 003608 225 WMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNL 304 (808)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~ 304 (808)
.++.++.-|..+ .... .+ +..++++..+...-|... ..+++.++..+.+.
T Consensus 213 li~~Ll~~L~~~-------~q~~--------~~-rt~Iq~l~~i~r~ag~r~--------------~~h~~~ivp~v~~y 262 (1233)
T KOG1824|consen 213 LIEHLLKGLSNR-------TQMS--------AT-RTYIQCLAAICRQAGHRF--------------GSHLDKIVPLVADY 262 (1233)
T ss_pred HHHHHHhccCCC-------CchH--------HH-HHHHHHHHHHHHHhcchh--------------hcccchhhHHHHHH
Confidence 566555555432 1111 12 234566776665544321 11223333333332
Q ss_pred HHhhhCCcccCHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCCh--------hhHhhhhcCHHHHH--H
Q 003608 305 LNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFND--------NDQKLWDEDPHEYV--R 374 (808)
Q Consensus 305 l~~~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~--------~d~e~w~~Dp~efv--~ 374 (808)
.... ...+|+++.++++-+..++..-+ +-+.|+.++++.. ++.|+.+.+ ++.+.+.+|-+++- .
T Consensus 263 ~~~~---e~~dDELrE~~lQale~fl~rcp--~ei~p~~pei~~l-~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~d 336 (1233)
T KOG1824|consen 263 CNKI---EEDDDELREYCLQALESFLRRCP--KEILPHVPEIINL-CLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDD 336 (1233)
T ss_pred hccc---ccCcHHHHHHHHHHHHHHHHhCh--hhhcccchHHHHH-HHHHhccCCCCCCCCccchhhhhhhccccchhcc
Confidence 2211 12467788877777666554322 3455666666554 335554332 22222322222221 1
Q ss_pred HhcccccccCCHHHHHHHHHHHHHHhcccchHH-----------------------HHHHHHHHHhcccCC------C--
Q 003608 375 KGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ-----------------------KFIQFIVGIFKRYDE------T-- 423 (808)
Q Consensus 375 ~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~-----------------------~il~~i~~~l~~~~~------~-- 423 (808)
+..|+.+-.|-+|.+|+.++..+...+.+ .++ .++....+.+.+... .
T Consensus 337 eYsDDeD~SWkVRRaAaKcl~a~IsSR~E-~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d 415 (1233)
T KOG1824|consen 337 EYSDDEDMSWKVRRAAAKCLEAVISSRLE-MLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADND 415 (1233)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhccHH-HHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCch
Confidence 11122112488999999999987655432 111 122222222222110 0
Q ss_pred ---CC--CCcchhhHHHHHHHHHHHHHHhhcCC-c-chH---HHHHHHhhcccccc----------------cC--CCcc
Q 003608 424 ---PV--EYKPYRQKDGALLAIGALCDKLKQTE-P-YKS---ELERMLVQHVFPEF----------------SS--PVGH 475 (808)
Q Consensus 424 ---~~--~~~~~~~~ea~l~~lg~~a~~l~~~~-~-~~~---~l~~~l~~~v~~~l----------------~~--~~~~ 475 (808)
.+ ...-|..++...+++.++..+++++. + ... .+..++ .+.|.. ++ ....
T Consensus 416 ~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli--~~lp~~l~~~~~slvpgI~~~l~DkSsss~ 493 (1233)
T KOG1824|consen 416 AMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELI--NVLPGALAQHIPSLVPGIIYSLNDKSSSSN 493 (1233)
T ss_pred hhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHH--HhCcchhhhcccccchhhhhhcCCccchHH
Confidence 00 01248889999999999999987532 1 111 111111 122321 11 1223
Q ss_pred hhhHHHHHHH-hhhccc---cCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc-----cccccccchHHHHH
Q 003608 476 LRAKAAWVAG-QYAHIN---FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-----DLNEIRPILPQLLD 546 (808)
Q Consensus 476 lr~~a~~~l~-~~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~-----~~~~l~p~l~~ll~ 546 (808)
++--++-++. ....+. |+ .+...+.+.++.+..++-..|...|......++.... ..-...||+.+++.
T Consensus 494 ~ki~~L~fl~~~L~s~~p~~fh--p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~ 571 (1233)
T KOG1824|consen 494 LKIDALVFLYSALISHPPEVFH--PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD 571 (1233)
T ss_pred HHHHHHHHHHHHHhcCChhhcc--cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH
Confidence 4444444442 222221 21 3566667777777788877788888888788776543 22567889999998
Q ss_pred HHHHHhhhhchh-----hHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHH
Q 003608 547 EFFKLMNEVENE-----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621 (808)
Q Consensus 547 ~l~~ll~~~~~~-----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~l 621 (808)
..++.+...+.+ ....+|+.++..|++...-..+.+...++. -++ ++ +++...+.+++.|
T Consensus 572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~e----Rl~----nE-------iTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 572 CTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLE----RLG----NE-------ITRLTAVKALTLI 636 (1233)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHh----ch-------hHHHHHHHHHHHH
Confidence 888887655443 377889999999998766666655555443 232 11 3455667777777
Q ss_pred HHhhcC-C-hHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhh-cCCCCChhhh-hhHHHHHHHhhhhHHhhhhh
Q 003608 622 LESVSR-L-PHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF-FSPTISLEMW-SLWPLMMEALADWAIDFFPN 697 (808)
Q Consensus 622 i~~~~~-~-~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~-~~~~~~p~l~-~~~~~l~~~~~~~~~~~~~~ 697 (808)
+.+.-. + .++. ..++|.+..-+....-.+.-..+..+..++. ++..+++.+. .++..+..++.+.+.-.-+.
T Consensus 637 a~S~l~i~l~~~l----~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~ 712 (1233)
T KOG1824|consen 637 AMSPLDIDLSPVL----TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQL 712 (1233)
T ss_pred HhccceeehhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 776422 1 2222 2334433333333223333444455555544 2456666544 34445555543333333344
Q ss_pred hhhhhhhhhccCccccc
Q 003608 698 ILVPLDNYISRGTAHFL 714 (808)
Q Consensus 698 ~~~~L~~~i~~~~~~~l 714 (808)
.+.+|.......|..++
T Consensus 713 a~~~L~tl~~~~ps~l~ 729 (1233)
T KOG1824|consen 713 AVAFLTTLAIIQPSSLL 729 (1233)
T ss_pred HHHHHHHHHhcccHHHH
Confidence 44444444444444333
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.88 E-value=0.00031 Score=78.76 Aligned_cols=520 Identities=14% Similarity=0.167 Sum_probs=280.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh----hHHHHHHHHHHHHHHcc
Q 003608 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ----QVYGALFVLRILSRKYE 155 (808)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~----~~~~~L~~L~~i~~~~~ 155 (808)
.+++ -...|-..++..+.++-..||+..+.+++.++..---+-+.++++.+..-+.++ .+..-..||.++++.-.
T Consensus 167 ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 167 LLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred cCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 3444 333444444444556667899999999999998653356778888888877665 45667789999998644
Q ss_pred cCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcC
Q 003608 156 FKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 235 (808)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 235 (808)
++.+. -.+.+.|.+.+.++..-. + -.+.+..++..+..+... -|.... +.....++.+++.++.
T Consensus 246 ~r~~~-------h~~~ivp~v~~y~~~~e~-~-----dDELrE~~lQale~fl~r-cp~ei~--p~~pei~~l~l~yisY 309 (1233)
T KOG1824|consen 246 HRFGS-------HLDKIVPLVADYCNKIEE-D-----DDELREYCLQALESFLRR-CPKEIL--PHVPEIINLCLSYISY 309 (1233)
T ss_pred chhhc-------ccchhhHHHHHHhccccc-C-----cHHHHHHHHHHHHHHHHh-Chhhhc--ccchHHHHHHHHHhcc
Confidence 33222 233456777776655411 1 235566666666554431 232221 3445567777888876
Q ss_pred CCCCC-CCCCCh----------hh------hhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHH--
Q 003608 236 PVPSE-GEPADP----------EQ------RKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK-- 296 (808)
Q Consensus 236 ~~~~~-~~~~d~----------~~------~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~-- 296 (808)
+.+-. ...+|+ ++ .+..-=||+++.+.+++..++..- .|+ ...|.....|.
T Consensus 310 DPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR-------~E~---L~~~~q~l~p~lI 379 (1233)
T KOG1824|consen 310 DPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR-------LEM---LPDFYQTLGPALI 379 (1233)
T ss_pred CCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc-------HHH---HHHHHHHhCHHHH
Confidence 52211 010111 00 011234899999999998776431 111 01111111121
Q ss_pred -------------HHHHHHHHHHhhhC-Cccc--CHHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChh
Q 003608 297 -------------ILECHLNLLNRIRV-GGYL--PDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDN 360 (808)
Q Consensus 297 -------------~~~~~~~~l~~~~~-~~~~--~~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~ 360 (808)
+++.+...+.++.. .++. .|.... ...+.-...++.....++.. +-+.
T Consensus 380 ~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~---------~g~~s~~~~L~~~~~~iVka-i~~q------ 443 (1233)
T KOG1824|consen 380 SRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ---------GGTPSDLSMLSDQVPLIVKA-IQKQ------ 443 (1233)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc---------cCCccchHHHHhhhHHHHHH-HHHH------
Confidence 22222222222110 0000 010000 00111111222222222221 1111
Q ss_pred hHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHHhcccchHH---HHHHHHHHHhcccCCCCCCCcchhhHHHHH
Q 003608 361 DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ---KFIQFIVGIFKRYDETPVEYKPYRQKDGAL 437 (808)
Q Consensus 361 d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~---~il~~i~~~l~~~~~~~~~~~~~~~~ea~l 437 (808)
++ ++.---|..+..+|.++...+++...+ .+++-|.-.++..+ +.+-..+++.-
T Consensus 444 ------------lr------~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkS-----sss~~ki~~L~ 500 (1233)
T KOG1824|consen 444 ------------LR------EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKS-----SSSNLKIDALV 500 (1233)
T ss_pred ------------Hh------hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCcc-----chHHHHHHHHH
Confidence 11 111225777888888888877653332 33333333333321 23567888888
Q ss_pred HHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccc--------cCChhHHHHHHHHHHhcC
Q 003608 438 LAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--------FSDQNNFRKALHSVVSGL 509 (808)
Q Consensus 438 ~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~--------~~~~~~~~~~~~~ll~~l 509 (808)
+..+.+..+-.+. |...+ +.+.+.+.-...++.+-+.+-|+.+.++|.++. |....+..+++...++.|
T Consensus 501 fl~~~L~s~~p~~--fhp~~-~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL 577 (1233)
T KOG1824|consen 501 FLYSALISHPPEV--FHPHL-SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRL 577 (1233)
T ss_pred HHHHHHhcCChhh--cccch-hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHH
Confidence 8888777653331 11111 222222222334667788899999999997642 222257899999999988
Q ss_pred C--CCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh-chhhHHHHHHHHHHh-ccccccchHHHHHHH
Q 003608 510 R--DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV-ENEDLVFTLETIVDK-FGEEMAPYALGLCQN 585 (808)
Q Consensus 510 ~--~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~-~~~~l~~~l~~iv~~-~~~~i~p~~~~l~~~ 585 (808)
. |.|.-||..|..++..++... .+.+...++.++..+++-+++- .--..+.++..|+.. ..=...|....+...
T Consensus 578 ~a~d~DqeVkeraIscmgq~i~~f--gD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~ 655 (1233)
T KOG1824|consen 578 KATDSDQEVKERAISCMGQIIANF--GDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPE 655 (1233)
T ss_pred hcccccHHHHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHH
Confidence 5 567789999999999999885 5888888888888888766542 111345555555533 223456777777777
Q ss_pred HHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCCh--HHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHH
Q 003608 586 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLP--HLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVS 663 (808)
Q Consensus 586 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~--~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~ 663 (808)
+.+ |++-.. .-.+...+.++..++...+.+- +.+..+-..+.|+|... .-+..+.++.+++
T Consensus 656 l~~-flrK~~------------r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises----dlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 656 LAS-FLRKNQ------------RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES----DLHVTQLAVAFLT 718 (1233)
T ss_pred HHH-HHHHHH------------HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHH
Confidence 775 333211 1234567888888888765432 23333333344444332 3467788888888
Q ss_pred HhhhcCCC-CChhhhhhHHHHHHHh
Q 003608 664 YMTFFSPT-ISLEMWSLWPLMMEAL 687 (808)
Q Consensus 664 ~~~~~~~~-~~p~l~~~~~~l~~~~ 687 (808)
.+....+. +......+.+.+..++
T Consensus 719 tl~~~~ps~l~~~~~~iL~~ii~ll 743 (1233)
T KOG1824|consen 719 TLAIIQPSSLLKISNPILDEIIRLL 743 (1233)
T ss_pred HHHhcccHHHHHHhhhhHHHHHHHh
Confidence 88754321 1222234455555554
No 25
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00045 Score=78.28 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcc---ccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC-----ChHH
Q 003608 560 LVFTLETIVDKFG---EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-----LPHL 631 (808)
Q Consensus 560 l~~~l~~iv~~~~---~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~-----~~~~ 631 (808)
...+|++++.... +.++|+.+.+++.|.. +.++-+.| -+-.++.+++...++ .++.
T Consensus 523 AalALq~fI~~~~~~~e~~~~hvp~~mq~lL~----L~ne~End------------~Lt~vme~iV~~fseElsPfA~eL 586 (1010)
T KOG1991|consen 523 AALALQSFISNQEQADEKVSAHVPPIMQELLK----LSNEVEND------------DLTNVMEKIVCKFSEELSPFAVEL 586 (1010)
T ss_pred HHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH----HHHhcchh------------HHHHHHHHHHHHHHHhhchhHHHH
Confidence 4567888887654 4588998888887775 55443322 134455566655533 2244
Q ss_pred HHHHHhhHHHHHHHHcccC--hhhHHHHHHHHHH---HhhhcCCCCChhhhhh----HHHHHHHhhhhHHhhhhhhhhhh
Q 003608 632 FVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVS---YMTFFSPTISLEMWSL----WPLMMEALADWAIDFFPNILVPL 702 (808)
Q Consensus 632 ~~~~~~~~~p~i~~~l~~~--~~~~~e~~l~ll~---~~~~~~~~~~p~l~~~----~~~l~~~~~~~~~~~~~~~~~~L 702 (808)
+.++.+.++.+++..-..+ +.+=.=.|..+++ +++..-...+.-+.++ +|.+-.++.++..|+...++.++
T Consensus 587 ~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 587 CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444444444311111 1111112223333 3332222222233333 44444445677889999999999
Q ss_pred hhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCc--cc-chHHHHHHHHHHHhh
Q 003608 703 DNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQV--DH-WVEPYLRITVERLRR 778 (808)
Q Consensus 703 ~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~--~~-~l~~il~~~~~~l~~ 778 (808)
.++-...++. - .-+..+++++.+++..... ++ ......++..++..-.+.+ .| |+..++..+-..+.+
T Consensus 667 ~~~t~~~~~I-s-----p~mW~ll~li~e~~~~~~~-dy-f~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~ 737 (1010)
T KOG1991|consen 667 SSLTFLSKEI-S-----PIMWGLLELILEVFQDDGI-DY-FTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTS 737 (1010)
T ss_pred hhhhhhhccc-C-----HHHHHHHHHHHHHHhhhhH-HH-HHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcC
Confidence 8876666543 2 4566677777666653321 11 1123334444444433332 23 444455554444544
No 26
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.79 E-value=3.4e-08 Score=91.73 Aligned_cols=130 Identities=24% Similarity=0.424 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh--hHHHHHHHHHHHHHHcc-cCC----cCCcchHHHHHHHHh
Q 003608 101 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRILSRKYE-FKS----DEERTPVYRIVEETF 173 (808)
Q Consensus 101 ~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~i~~~~~-~~~----~~~~~~~~~~~~~~~ 173 (808)
++.|++++|.+++.|+.+|||++||++++++++.++++ ....+|.+|..+.+++. +.+ .+.|..+...+...+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999886 56778888888888775 221 223556777777778
Q ss_pred HHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcC
Q 003608 174 HHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 235 (808)
Q Consensus 174 p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 235 (808)
|.+++++.+.++..... ...++...+++|+.+++..--++.+.+ ..+++.+.++++.
T Consensus 81 ~~i~~~l~~~l~~~~~~-~~~~~~~~~L~~l~s~i~~~~~~~i~~----~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 81 PDILEILSQILSQSSSE-ANEELVKAALKCLKSWISWIPIELIIN----SNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHHHCHC-CHHHHHHHHHHHHHHHTTTS-HHHHHS----SSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHHHhCCHHHhcc----HHHHHHHHHHcCC
Confidence 88888888877643211 125678889999998775211222221 1256666676643
No 27
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.29 E-value=0.00089 Score=73.14 Aligned_cols=249 Identities=16% Similarity=0.228 Sum_probs=144.9
Q ss_pred HHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccc-cchHHHHHHHHHHhhhhchhh--HHHHHHHHHHhccccccc
Q 003608 501 ALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR-PILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEEMAP 577 (808)
Q Consensus 501 ~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~-p~l~~ll~~l~~ll~~~~~~~--l~~~l~~iv~~~~~~i~p 577 (808)
++..++.-+.|...+-|...+.++.+++.... ...+. ..-+.++..++..+++.+.++ ++..++.++..++..+.|
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg-~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kp 795 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLG-AADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKP 795 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccc-cccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhcccc
Confidence 34444444556666677777777777776653 23333 234567777777777665543 567889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHH
Q 003608 578 YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEE 657 (808)
Q Consensus 578 ~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~ 657 (808)
|.++++.... +++ ++.. +..+....+.++.+...++...+ ..+...+=-++.+.+..+..+.+..
T Consensus 796 ylpqi~stiL---~rL-nnks---------a~vRqqaadlis~la~Vlktc~e--e~~m~~lGvvLyEylgeeypEvLgs 860 (1172)
T KOG0213|consen 796 YLPQICSTIL---WRL-NNKS---------AKVRQQAADLISSLAKVLKTCGE--EKLMGHLGVVLYEYLGEEYPEVLGS 860 (1172)
T ss_pred chHHHHHHHH---HHh-cCCC---------hhHHHHHHHHHHHHHHHHHhccH--HHHHHHhhHHHHHhcCcccHHHHHH
Confidence 9999997654 333 2211 12344556666666655543222 0111223333444444455566677
Q ss_pred HHHHHHHhhhcC--CCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcC
Q 003608 658 VLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD 735 (808)
Q Consensus 658 ~l~ll~~~~~~~--~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~ 735 (808)
.+.-+..+.... ....|-...++|.+..++.+--.-...+++.++......||+.+-. .+++...|+++.-+-..
T Consensus 861 ILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a---REWMRIcfeLlelLkah 937 (1172)
T KOG0213|consen 861 ILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA---REWMRICFELLELLKAH 937 (1172)
T ss_pred HHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH---HHHHHHHHHHHHHHHHH
Confidence 776666666532 3455556777888877775544446677788888888888885332 26777777776655432
Q ss_pred CCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHh
Q 003608 736 KNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLR 777 (808)
Q Consensus 736 ~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~ 777 (808)
++-- +..|..-++.|....|. ++++..+++.|.
T Consensus 938 kK~i---RRaa~nTfG~IakaIGP------qdVLatLlnnLk 970 (1172)
T KOG0213|consen 938 KKEI---RRAAVNTFGYIAKAIGP------QDVLATLLNNLK 970 (1172)
T ss_pred HHHH---HHHHHhhhhHHHHhcCH------HHHHHHHHhcch
Confidence 2110 12344444445544443 234445555554
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00028 Score=74.85 Aligned_cols=364 Identities=16% Similarity=0.190 Sum_probs=207.0
Q ss_pred cCCHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003608 383 LYSPRTASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (808)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~-~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l 461 (808)
.|..|++|+--++.+++.+ .+.-...+-.+|.+....+..++.. ..+.|++..+.+.+-++..+. ...+++++
T Consensus 13 lYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~----n~rkGgLiGlAA~~iaLg~~~--~~Y~~~iv 86 (675)
T KOG0212|consen 13 LYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHA----NMRKGGLIGLAAVAIALGIKD--AGYLEKIV 86 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccc----ccccchHHHHHHHHHHhcccc--HHHHHHhh
Confidence 4778999988888888765 3333445555555566665544432 233399999988887775532 11334443
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccccccccc
Q 003608 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (808)
Q Consensus 462 ~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p 539 (808)
.+ |++.+++++..+|+-||-.+=..++.. +.. .++..++..+.+...|++..|| .++.-+.+++.+.-....-.=
T Consensus 87 ~P-v~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 87 PP-VLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTESASTF 163 (675)
T ss_pred HH-HHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcccccccc
Confidence 33 556677888999999998875555432 121 4688889998888888888888 566777777765431111122
Q ss_pred chHHHHHHHHHHhhhhchhh---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 003608 540 ILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (808)
Q Consensus 540 ~l~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (808)
.++.+++-|-.-+...+... ++.-+..+-..-.-++..|.+++...|.+ .++ |+ ... .+.-+=.
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~----~Ls----D~----s~e-Vr~~~~t 230 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN----MLS----DS----SDE-VRTLTDT 230 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH----Hhc----CC----cHH-HHHHHHH
Confidence 34455544443333333222 33333333333333455566777666664 222 22 111 1223345
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC-CCCChhhhhhHHHHHHHhhhhH----
Q 003608 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWA---- 691 (808)
Q Consensus 617 ~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~-~~~~p~l~~~~~~l~~~~~~~~---- 691 (808)
+++..+..+.+.|..+. .+...+++..-++.........++--+..+++-. +.+-+..-.++..+++++.+..
T Consensus 231 ~l~~fL~eI~s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHHHHHhcCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 67788888877775431 1233333333333333344456665566666633 4445555566666666653221
Q ss_pred Hhhhhhhhhhhhhhhc--cCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHH
Q 003608 692 IDFFPNILVPLDNYIS--RGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYL 769 (808)
Q Consensus 692 ~~~~~~~~~~L~~~i~--~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il 769 (808)
.++-+..-..+...+. .+.++ + .+ ..+++...+.+.++.. + -+.++.+-+..+..+.|+++.-+..+|.
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~~~-i-----d~-~~ii~vl~~~l~~~~~-~-tri~~L~Wi~~l~~~~p~ql~~h~~~if 379 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLKEE-I-----DY-GSIIEVLTKYLSDDRE-E-TRIAVLNWIILLYHKAPGQLLVHNDSIF 379 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhccc-c-----ch-HHHHHHHHHHhhcchH-H-HHHHHHHHHHHHHhhCcchhhhhccHHH
Confidence 1111111111111111 11111 2 23 3556888888875432 2 2577889999999999999988999999
Q ss_pred HHHHHHHhhc
Q 003608 770 RITVERLRRA 779 (808)
Q Consensus 770 ~~~~~~l~~~ 779 (808)
..++..|.+.
T Consensus 380 ~tLL~tLsd~ 389 (675)
T KOG0212|consen 380 LTLLKTLSDR 389 (675)
T ss_pred HHHHHhhcCc
Confidence 9998888764
No 29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.0031 Score=74.68 Aligned_cols=297 Identities=13% Similarity=0.215 Sum_probs=172.3
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc----CCCcchhhHHHHHHHhhhcccc--CC--hhHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS----SPVGHLRAKAAWVAGQYAHINF--SD--QNNFR 499 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~----~~~~~lr~~a~~~l~~~~~~~~--~~--~~~~~ 499 (808)
..|.-|-||-+.+|.++..-.+ .+++++.+ ++|-|- +|++-++.+-. - -|....- +. .+++.
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~------kl~p~l~k-LIPrLyRY~yDP~~~Vq~aM~-s--IW~~Li~D~k~~vd~y~n 1038 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGE------KLEPYLKK-LIPRLYRYQYDPDKKVQDAMT-S--IWNALITDSKKVVDEYLN 1038 (1702)
T ss_pred chhhcccchhhchHHHHHHHHH------hhhhHHHH-hhHHHhhhccCCcHHHHHHHH-H--HHHHhccChHHHHHHHHH
Confidence 5799999999999999987533 45566654 445442 66666665332 1 1221221 11 27899
Q ss_pred HHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh------hHHHHHHHHHHhccc
Q 003608 500 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE------DLVFTLETIVDKFGE 573 (808)
Q Consensus 500 ~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~------~l~~~l~~iv~~~~~ 573 (808)
.+++-++..|.+..=+||+++|.||..+++..+ .+.+...+|.+...++..+++.... -...+++.++.+..+
T Consensus 1039 eIl~eLL~~lt~kewRVReasclAL~dLl~g~~-~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1039 EILDELLVNLTSKEWRVREASCLALADLLQGRP-FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999888999999999999998863 7788889999999999999876432 256778888777665
Q ss_pred cccc-hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChh
Q 003608 574 EMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (808)
Q Consensus 574 ~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~ 652 (808)
-..+ -+.+.+..+.+. +|+...... -+. .+...+.++.+++++-+. ......+.+.|.+..++..-..
T Consensus 1118 ~~~~~~~~~~l~~iLPf---Ll~~gims~----v~e-vr~~si~tl~dl~Kssg~---~lkP~~~~LIp~ll~~~s~lE~ 1186 (1702)
T KOG0915|consen 1118 VTNGAKGKEALDIILPF---LLDEGIMSK----VNE-VRRFSIGTLMDLAKSSGK---ELKPHFPKLIPLLLNAYSELEP 1186 (1702)
T ss_pred cCCcccHHHHHHHHHHH---HhccCcccc----hHH-HHHHHHHHHHHHHHhchh---hhcchhhHHHHHHHHHccccch
Confidence 4333 233344333332 444433211 111 233567777777776542 2233335666666666543111
Q ss_pred hHHHH--------HHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHH
Q 003608 653 EVFEE--------VLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQS 724 (808)
Q Consensus 653 ~~~e~--------~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 724 (808)
-.+.+ .-+-+...=.+...-+| +++.++-.+.+--..++. +.+..
T Consensus 1187 ~vLnYls~r~~~~e~ealDt~R~s~akssp-----------------------mmeTi~~ci~~iD~~vLe----elip~ 1239 (1702)
T KOG0915|consen 1187 QVLNYLSLRLINIETEALDTLRASAAKSSP-----------------------MMETINKCINYIDISVLE----ELIPR 1239 (1702)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhcCCc-----------------------HHHHHHHHHHhhhHHHHH----HHHHH
Confidence 11110 00000000000001111 222222222221122232 34444
Q ss_pred HHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhh
Q 003608 725 LWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (808)
Q Consensus 725 l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~ 778 (808)
+.+.....++-++ +..++..+..+..+++.++.||.+..+.++++.+.+
T Consensus 1240 l~el~R~sVgl~T-----kvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1240 LTELVRGSVGLGT-----KVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD 1288 (1702)
T ss_pred HHHHHhccCCCCc-----chhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc
Confidence 4444444433221 234667777888888888899999999998888876
No 30
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.039 Score=60.23 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=114.8
Q ss_pred CC-hHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcC
Q 003608 1 MD-LPSLALILQGAL-SPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (808)
Q Consensus 1 Md-~~~l~~~l~~~l-s~d~~~r~~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~ 78 (808)
|+ +.+|+.+....+ +.|+..|.+||..|.++..+|++.+.+.-++.+.+ .+--..+|+..|-+.+.++=
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs-~pYs~mlAst~L~Klvs~~t-------- 71 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGS-YPYSQMLASTCLMKLVSRKT-------- 71 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHcCCC--------
Confidence 55 567777777655 48999999999999999999999999888887755 44567778888877776543
Q ss_pred CCCChhHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHhhhCCC------CChhHHHHHHHHhchh---hHHHHHH
Q 003608 79 QKISQVDKDMVRDHILVFVAQV----PPLLRVQLGECLKTIIHADYPE------QWPHLLDWVKHNLQDQ---QVYGALF 145 (808)
Q Consensus 79 ~~l~~e~k~~ir~~ll~~l~~~----~~~i~~~~~~~i~~Ia~~d~p~------~Wp~ll~~l~~~l~s~---~~~~~L~ 145 (808)
.+|-++|-.||+-+++.+... .+-+...++..+++|-+..|-+ .+-+.+.++...++.+ .-..|+.
T Consensus 72 -~lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~ 150 (1082)
T KOG1410|consen 72 -PLPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQ 150 (1082)
T ss_pred -CCcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHH
Confidence 399999999999999999653 2456788999999999988762 2457888888888766 3456788
Q ss_pred HHHHHHHHcc
Q 003608 146 VLRILSRKYE 155 (808)
Q Consensus 146 ~L~~i~~~~~ 155 (808)
.|.+++.+..
T Consensus 151 iLsqLvqemN 160 (1082)
T KOG1410|consen 151 ILSQLVQEMN 160 (1082)
T ss_pred HHHHHHHHhh
Confidence 9999998774
No 31
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.0042 Score=67.52 Aligned_cols=236 Identities=14% Similarity=0.167 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccc
Q 003608 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEM 575 (808)
Q Consensus 496 ~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i 575 (808)
.+..++++.++.+..|....||..|..|.+.+.+.. ....++-.++.++..+..- .--+....+..+++++......+
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~-~~~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL-SAYAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc-CcchhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHH
Confidence 478999999999999988899999999999988765 3666777788888877765 22233346777777777666666
Q ss_pred cchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHH
Q 003608 576 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 655 (808)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~ 655 (808)
.-++++++..+.+.+ |++ ++..+..-.+|+..+...+ +++++ +.++|.+-.++.+. ....
T Consensus 290 s~~lp~iiP~lsevl---~DT----------~~evr~a~~~~l~~~~svi-dN~dI-----~~~ip~Lld~l~dp-~~~~ 349 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVL---WDT----------KPEVRKAGIETLLKFGSVI-DNPDI-----QKIIPTLLDALADP-SCYT 349 (569)
T ss_pred HHHHhHhhHHHHHHH---ccC----------CHHHHHHHHHHHHHHHHhh-ccHHH-----HHHHHHHHHHhcCc-ccch
Confidence 667777777776622 322 2223445566766665544 45653 56788888888543 3345
Q ss_pred HHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhcc--CcccccccCCchHHHHHHHHHHHHh
Q 003608 656 EEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR--GTAHFLTCKEPDYQQSLWSMVSSIM 733 (808)
Q Consensus 656 e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~--~~~~~l~~~~~~~~~~l~~~~~~~l 733 (808)
+++++.+....+..---.|.+--+.|.+.+-+.+-+.+.-.....+++|.... ++..+. .|+..++.-+.+.+
T Consensus 350 ~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la-----pfl~~Llp~lk~~~ 424 (569)
T KOG1242|consen 350 PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA-----PFLPSLLPGLKENL 424 (569)
T ss_pred HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh-----hhHHHHhhHHHHHh
Confidence 56666665554433223466767777777777655566667777777776664 455544 78888888888888
Q ss_pred cCCCCCCCccCchhHHHHHHHHHcCcC
Q 003608 734 ADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (808)
Q Consensus 734 ~~~~~~~~~~~~a~~ll~~ii~~~~~~ 760 (808)
.+. ..+ .+..+.+.++.+++..+..
T Consensus 425 ~d~-~PE-vR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 425 DDA-VPE-VRAVAARALGALLERLGEV 449 (569)
T ss_pred cCC-Chh-HHHHHHHHHHHHHHHHHhh
Confidence 654 233 2456778888888888765
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.92 E-value=0.079 Score=60.58 Aligned_cols=503 Identities=16% Similarity=0.195 Sum_probs=264.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC---C-ChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCC
Q 003608 4 PSLALILQGALSPNPEERKAAEHSLNQFQYT---P-QHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (808)
Q Consensus 4 ~~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~---p-~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~ 79 (808)
+++.+++...- .|...++.|=..|-.+... . .+.....+.+. +.+...|.++-+++.... .
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~----~-------- 71 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYL----H-------- 71 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHT----T--------
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHh----h--------
Confidence 45566666554 5666777777777665421 1 12233334443 457889999988885554 3
Q ss_pred CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh--hH-HHHHHHHHHHHHHccc
Q 003608 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEF 156 (808)
Q Consensus 80 ~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~~~~ 156 (808)
-+++.--.+-+.+.+-+.++++.+|...-.+++.|.. |+-.+.+++.+.+.+.++ .+ ..|+.++..+++...
T Consensus 72 -~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p- 146 (526)
T PF01602_consen 72 -EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP- 146 (526)
T ss_dssp -TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-
T ss_pred -cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-
Confidence 2334445566666677778899999766667666664 456788999999999877 33 667888889888642
Q ss_pred CCcCCcchHHHHHHH-HhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcC
Q 003608 157 KSDEERTPVYRIVEE-TFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLER 235 (808)
Q Consensus 157 ~~~~~~~~~~~~~~~-~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 235 (808)
+ .++. ++|.+.+ ++.+.+ ..++..++.++..+ . .-|+... ..+......+.+.+..
T Consensus 147 ---~-------~~~~~~~~~l~~----lL~d~~-----~~V~~~a~~~l~~i-~-~~~~~~~--~~~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 147 ---D-------LVEDELIPKLKQ----LLSDKD-----PSVVSAALSLLSEI-K-CNDDSYK--SLIPKLIRILCQLLSD 203 (526)
T ss_dssp ---C-------CHHGGHHHHHHH----HTTHSS-----HHHHHHHHHHHHHH-H-CTHHHHT--THHHHHHHHHHHHHTC
T ss_pred ---H-------HHHHHHHHHHhh----hccCCc-----chhHHHHHHHHHHH-c-cCcchhh--hhHHHHHHHhhhcccc
Confidence 1 1212 2444443 333222 34556666777665 1 0111101 2334444444444422
Q ss_pred CCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccC
Q 003608 236 PVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLP 315 (808)
Q Consensus 236 ~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (808)
+ + ||..+ .+++ ++.+|... .++.. .+ ..+++.+...+.. .+
T Consensus 204 ~--------~-------~~~q~--~il~----~l~~~~~~---~~~~~-------~~--~~~i~~l~~~l~s------~~ 244 (526)
T PF01602_consen 204 P--------D-------PWLQI--KILR----LLRRYAPM---EPEDA-------DK--NRIIEPLLNLLQS------SS 244 (526)
T ss_dssp C--------S-------HHHHH--HHHH----HHTTSTSS---SHHHH-------HH--HHHHHHHHHHHHH------HH
T ss_pred c--------c-------hHHHH--HHHH----HHHhcccC---Chhhh-------hH--HHHHHHHHHHhhc------cc
Confidence 1 1 22222 1333 33343221 11100 00 1244444444432 24
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003608 316 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (808)
Q Consensus 316 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~ 395 (808)
..++..+...+..+...+.. +..++..++ ..+. ......|..+.+.+.
T Consensus 245 ~~V~~e~~~~i~~l~~~~~~-------~~~~~~~L~-~lL~------------------------s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPSPEL-------LQKAINPLI-KLLS------------------------SSDPNVRYIALDSLS 292 (526)
T ss_dssp HHHHHHHHHHHHHHSSSHHH-------HHHHHHHHH-HHHT------------------------SSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcchHH-------HHhhHHHHH-HHhh------------------------cccchhehhHHHHHH
Confidence 56677777777655443321 111222111 1110 011236677777777
Q ss_pred HHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-CCCc
Q 003608 396 ELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVG 474 (808)
Q Consensus 396 ~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~-~~~~ 474 (808)
.++...+..+.. .......+.. +.+...|.-++.++..++..- ++..++. .+...+. .+++
T Consensus 293 ~l~~~~~~~v~~--~~~~~~~l~~-------~~d~~Ir~~~l~lL~~l~~~~--------n~~~Il~-eL~~~l~~~~d~ 354 (526)
T PF01602_consen 293 QLAQSNPPAVFN--QSLILFFLLY-------DDDPSIRKKALDLLYKLANES--------NVKEILD-ELLKYLSELSDP 354 (526)
T ss_dssp HHCCHCHHHHGT--HHHHHHHHHC-------SSSHHHHHHHHHHHHHH--HH--------HHHHHHH-HHHHHHHHC--H
T ss_pred Hhhcccchhhhh--hhhhhheecC-------CCChhHHHHHHHHHhhccccc--------chhhHHH-HHHHHHHhccch
Confidence 777665322211 1111222321 135556777777777766531 1222211 1222232 2345
Q ss_pred chhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 003608 475 HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (808)
Q Consensus 475 ~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~ 554 (808)
-+|..++..++..+... +.....+++.+++.+......+...+...+..++... +.. -..++..++..+.+
T Consensus 355 ~~~~~~i~~I~~la~~~---~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~---~~~---~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKF---PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN---PEL---REKILKKLIELLED 425 (526)
T ss_dssp HHHHHHHHHHHHHHHHH---GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS---TTT---HHHHHHHHHHHHTS
T ss_pred hhhhhHHHHHHHHHhcc---CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC---hhh---hHHHHHHHHHHHHH
Confidence 58888999998887632 2234666777777776666667888888899988764 222 23457777777777
Q ss_pred hchhhHHHHHHHHHHhccccccc--hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHH
Q 003608 555 VENEDLVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF 632 (808)
Q Consensus 555 ~~~~~l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~ 632 (808)
.+.+.+..++--++..+++.+.. .+.++...+.+ .+. ++ ....+..++.++..+....... +..
T Consensus 426 ~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~----~~~----~~-----~~~vk~~ilt~~~Kl~~~~~~~-~~~ 491 (526)
T PF01602_consen 426 ISSPEALAAAIWILGEYGELIENTESAPDILRSLIE----NFI----EE-----SPEVKLQILTALAKLFKRNPEN-EVQ 491 (526)
T ss_dssp SSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHH----HHT----TS-----HHHHHHHHHHHHHHHHHHSCST-THH
T ss_pred hhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHH----hhc----cc-----cHHHHHHHHHHHHHHHhhCCch-hhH
Confidence 66556555555555555544433 45555555544 222 11 1235567777777777654321 111
Q ss_pred HHHHhhHHHHHHHHcc--cChhhHHHHHHHHHHHh
Q 003608 633 VQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSYM 665 (808)
Q Consensus 633 ~~~~~~~~p~i~~~l~--~~~~~~~e~~l~ll~~~ 665 (808)
+.+.+.+..... ..+.+..+.+...+.-+
T Consensus 492 ----~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 492 ----NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ----HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 345555555555 44667788887777654
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=97.91 E-value=0.092 Score=61.02 Aligned_cols=140 Identities=12% Similarity=0.074 Sum_probs=82.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhc-CCC---hHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCC--------------
Q 003608 11 QGALSPNPEERKAAEHSLNQFQY-TPQ---HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAP-------------- 72 (808)
Q Consensus 11 ~~~ls~d~~~r~~Ae~~L~~~~~-~p~---f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~-------------- 72 (808)
...-|+|...|+.|=+.+-.... --+ ........+. +.+..+|.+.-+++.++-+.+=..
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~--S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d 116 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAP--STDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTN 116 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCC
Confidence 33346677777777666654432 112 2222223332 347889999888888875533220
Q ss_pred CCC-------Cc-CCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCCh--hHHHHHHHHhchh---h
Q 003608 73 HEP-------NE-QQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWP--HLLDWVKHNLQDQ---Q 139 (808)
Q Consensus 73 ~~~-------~~-~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp--~ll~~l~~~l~s~---~ 139 (808)
.++ +. ...-.++--..+-..+.+++.+.++-||+..+.|+.+|.+.+ |+.-+ ++++.+.+++.++ -
T Consensus 117 ~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~V 195 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVV 195 (746)
T ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccH
Confidence 000 00 011123334445555566677889999999999999998754 54322 3556666667655 3
Q ss_pred HHHHHHHHHHHHHH
Q 003608 140 VYGALFVLRILSRK 153 (808)
Q Consensus 140 ~~~~L~~L~~i~~~ 153 (808)
+.+|+.+|.++.+.
T Consensus 196 v~nAl~aL~eI~~~ 209 (746)
T PTZ00429 196 ASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHHHHh
Confidence 57888899998764
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.81 E-value=0.25 Score=62.96 Aligned_cols=307 Identities=12% Similarity=0.116 Sum_probs=154.6
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCc-c--hHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCC-hhHH--HHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEP-Y--KSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD-QNNF--RKAL 502 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~-~--~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~-~~~~--~~~~ 502 (808)
+-..++.++.+++.++.+-.+... . ..-++. +...|.++++-+|..|+|+++..+... .+ .... ..++
T Consensus 459 s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~-----LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aGAI 532 (2102)
T PLN03200 459 SEQQQEYAVALLAILTDEVDESKWAITAAGGIPP-----LVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAGAV 532 (2102)
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCCCH
Confidence 456778888999988754322100 0 001212 222456778899999999999988632 11 1122 2568
Q ss_pred HHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch-----------HHHHHHHHHHhhhhchhh-------HHHHH
Q 003608 503 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-----------PQLLDEFFKLMNEVENED-------LVFTL 564 (808)
Q Consensus 503 ~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l-----------~~ll~~l~~ll~~~~~~~-------l~~~l 564 (808)
+.+++.|.+.+..++..|+.||.+++...+ .+.+.+++ ...+..+..+++..+.++ -...+
T Consensus 533 ppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 533 PALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 888999988888899999999999986542 22221111 001111111111000000 00111
Q ss_pred HHHHHhcc---ccccchHHHHHHHH----------------HHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhh
Q 003608 565 ETIVDKFG---EEMAPYALGLCQNL----------------AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV 625 (808)
Q Consensus 565 ~~iv~~~~---~~i~p~~~~l~~~L----------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~ 625 (808)
..++.-.. +.+...+..++..+ +..+..++..+. . + .+.....+++.+....
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~--~----~---v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT--E----A---VATQSARALAALSRSI 682 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--h----H---HHHHHHHHHHHHHhCC
Confidence 11111111 11111111111111 111122222111 0 1 2223455566666543
Q ss_pred cCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChhh-hhhHHHHHHHhhhhHHhhhhhhhhhhhh
Q 003608 626 SRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM-WSLWPLMMEALADWAIDFFPNILVPLDN 704 (808)
Q Consensus 626 ~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~l-~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 704 (808)
.+ .+...-+...++|.+-..+...+.+..+.++..+.+++.......... ....|.+.+++.++....-.+....|..
T Consensus 683 ~~-~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~ 761 (2102)
T PLN03200 683 KE-NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQ 761 (2102)
T ss_pred CH-HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 22 222222455577778888877788999999999999987653221111 2457888888876666667777777777
Q ss_pred hhccCcc-cccccCCchHHHHH--HHHHHHHhcCCCCCCCccCchhHHHHHHHHH
Q 003608 705 YISRGTA-HFLTCKEPDYQQSL--WSMVSSIMADKNLEDGDIEPAPKLIEVVFQN 756 (808)
Q Consensus 705 ~i~~~~~-~~l~~~~~~~~~~l--~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~ 756 (808)
....++. +.+. .+++.. +.-+..+|.....+..+...|...+..+.+.
T Consensus 762 L~~~~~~~~~~~----~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 762 LLKHFPVDDVLK----DSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHhCCChhHHHH----HHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 6666542 2121 222221 1223344544333333223356666666663
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.67 E-value=0.011 Score=66.24 Aligned_cols=222 Identities=18% Similarity=0.230 Sum_probs=124.4
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccccc-ccccc
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN-EIRPI 540 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~-~l~p~ 540 (808)
.+...|.++++.+|.-+++.+++.....-...+. -..+++.++.++.+++..|...|+.+|..++......+ .+.+.
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~ 160 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSN 160 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcc
Confidence 3444677899999999999999986532100111 25688999999999999999999999999997642111 11222
Q ss_pred hHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchHHHHHHH--HHHHHHHHHhcccCCCCCCChhHHHHHHHHHHH
Q 003608 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQN--LAAAFWRCMNTAEADEDADDPGALAAVGCLRAI 618 (808)
Q Consensus 541 l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~--L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i 618 (808)
++..|..++.+.+...-..+++.++...+.. |...+.+.. +.+.+.+-++. | | .+....+++++
T Consensus 161 ---~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~~~~~sgll~~ll~eL~~---d-----D-iLvqlnalell 226 (503)
T PF10508_consen 161 ---LLSKLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAEAVVNSGLLDLLLKELDS---D-----D-ILVQLNALELL 226 (503)
T ss_pred ---hHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHHHHHhccHHHHHHHHhcC---c-----c-HHHHHHHHHHH
Confidence 2666666666644444567777777665421 222222221 33322222221 1 2 35566788888
Q ss_pred HHHHHhhcCChHHHHHH-HhhHHHHHHHHcccCh-----hh-HHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHH----h
Q 003608 619 STILESVSRLPHLFVQI-EPTLLPIMRRMLTTDG-----QE-VFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEA----L 687 (808)
Q Consensus 619 ~~li~~~~~~~~~~~~~-~~~~~p~i~~~l~~~~-----~~-~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~----~ 687 (808)
+.+... +....-+ ...+++.+...+.... .. ++...+.+.+.+.... ++.+...+|.+.+. +
T Consensus 227 ~~La~~----~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~---~~~v~~~~p~~~~~l~~~~ 299 (503)
T PF10508_consen 227 SELAET----PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS---PQEVLELYPAFLERLFSML 299 (503)
T ss_pred HHHHcC----hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHh
Confidence 888762 2222222 3446666666665321 12 3455556666665432 22334455555443 3
Q ss_pred hhhHHhhhhhhhhhhhhhh
Q 003608 688 ADWAIDFFPNILVPLDNYI 706 (808)
Q Consensus 688 ~~~~~~~~~~~~~~L~~~i 706 (808)
++.+.......+..+....
T Consensus 300 ~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 300 ESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred CCCChhHHHHHHHHHHHHh
Confidence 3334444444555555443
No 36
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.65 E-value=0.089 Score=63.02 Aligned_cols=350 Identities=15% Similarity=0.164 Sum_probs=195.4
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~ 508 (808)
....|--|+.+++.+.+.=+..- .... .+.-|-.-+++++..||-+|+-++|+|.-. .++...++|..+.+.
T Consensus 829 ~ialRtkAlKclS~ive~Dp~vL-~~~d----vq~~Vh~R~~DssasVREAaldLvGrfvl~---~~e~~~qyY~~i~er 900 (1692)
T KOG1020|consen 829 AIALRTKALKCLSMIVEADPSVL-SRPD----VQEAVHGRLNDSSASVREAALDLVGRFVLS---IPELIFQYYDQIIER 900 (1692)
T ss_pred hHHHHHHHHHHHHHHHhcChHhh-cCHH----HHHHHHHhhccchhHHHHHHHHHHhhhhhc---cHHHHHHHHHHHHhh
Confidence 56788889999998876521100 0111 122244456788999999999999998642 567889999999999
Q ss_pred CCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh--HH-------------------------
Q 003608 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED--LV------------------------- 561 (808)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~--l~------------------------- 561 (808)
+.|+...||-.+.+-++.+|++- |-++.+.+.+.+++..++.|+ +-
T Consensus 901 IlDtgvsVRKRvIKIlrdic~e~-------pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~ 973 (1692)
T KOG1020|consen 901 ILDTGVSVRKRVIKILRDICEET-------PDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKA 973 (1692)
T ss_pred cCCCchhHHHHHHHHHHHHHHhC-------CChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHH
Confidence 99999999999999999999874 233344444444444332211 00
Q ss_pred ----------------------HHHHHHHHh-----ccccccchHHHHHHHHHHHHH-----HHHhcccCCCCCCChhHH
Q 003608 562 ----------------------FTLETIVDK-----FGEEMAPYALGLCQNLAAAFW-----RCMNTAEADEDADDPGAL 609 (808)
Q Consensus 562 ----------------------~~l~~iv~~-----~~~~i~p~~~~l~~~L~~~~~-----~~~~~~~~d~~~~~~~~~ 609 (808)
..+..++.. ....+.|.+...+.+...... ++.+-..++..++.
T Consensus 974 ~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~---- 1049 (1692)
T KOG1020|consen 974 RKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEE---- 1049 (1692)
T ss_pred HhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhccc----
Confidence 011111111 112233433333332222111 11111100110011
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHccc-ChhhHHHHHHHHHHHhhhcCCCCChhh-hhhHHHHHHH
Q 003608 610 AAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTT-DGQEVFEEVLEIVSYMTFFSPTISLEM-WSLWPLMMEA 686 (808)
Q Consensus 610 ~~~~~l~~i~~li~~~~~~~~~~~-~~~~~~~p~i~~~l~~-~~~~~~e~~l~ll~~~~~~~~~~~p~l-~~~~~~l~~~ 686 (808)
.....+.+++++..-....|..+. .....+.|++..-... +...|..+..+++..++-.-+.++..+ ..+=..+++.
T Consensus 1050 ~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1050 SEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred chhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 123456677777665556676665 5667788888776443 455889999999998875444444443 3444555666
Q ss_pred hhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcC-C-C-CCCCccC------chhHHHHHHHHHc
Q 003608 687 LADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMAD-K-N-LEDGDIE------PAPKLIEVVFQNC 757 (808)
Q Consensus 687 ~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~-~-~-~~~~~~~------~a~~ll~~ii~~~ 757 (808)
+-..+.-.+.++++++.+.+.+-.. +...+..+++.+.+.+.. + . .+..+.. -...+++.+.++.
T Consensus 1130 i~k~g~a~V~~~vsCl~sl~~k~~~------~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryf 1203 (1692)
T KOG1020|consen 1130 IVKMGMATVVEAVSCLGSLATKRTD------GAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYF 1203 (1692)
T ss_pred HHhcchHHHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhc
Confidence 5555667778888888776654322 225677777777777752 1 1 1221111 1234556666653
Q ss_pred CcC--------cccchHHHHHHHHHHH---hhchhhHHHHHHHHHHHHhHhhChHHH
Q 003608 758 KGQ--------VDHWVEPYLRITVERL---RRAEKSYLKCLLVQVVSFHERANSDLS 803 (808)
Q Consensus 758 ~~~--------~~~~l~~il~~~~~~l---~~~~~~~~~~~~~~~i~~~~~~n~~~~ 803 (808)
.-. .......+...++.-| ...+.+.+|..++.-.-.....+|...
T Consensus 1204 df~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~ 1260 (1692)
T KOG1020|consen 1204 DFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLF 1260 (1692)
T ss_pred cCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhh
Confidence 311 1111223333333333 334457777777666555555555543
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.62 E-value=0.0002 Score=59.75 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=65.5
Q ss_pred hhHHHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 003608 477 RAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~ 555 (808)
|..+++.++..+...-+ -.+++..+++.++.++.|++..||.+||.||-+++... ++.+.++++++++.|++++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 56777777776543211 23789999999999999999999999999999999875 6888899999999999999876
Q ss_pred ch
Q 003608 556 EN 557 (808)
Q Consensus 556 ~~ 557 (808)
+.
T Consensus 81 d~ 82 (97)
T PF12755_consen 81 DE 82 (97)
T ss_pred ch
Confidence 44
No 38
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.083 Score=61.90 Aligned_cols=198 Identities=17% Similarity=0.222 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCC-cchHHHHHHHhh
Q 003608 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PYKSELERMLVQ 463 (808)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~-~~~~~l~~~l~~ 463 (808)
..|..+..++..+.+..+.+....+...|.+++-... ..+...-+....+|..+|.+.......+ +-...+..|+..
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~K--e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~ 789 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLK--EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSI 789 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcc--cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence 3566677888888888776666666677777764431 1111234566777777776444433322 213356666643
Q ss_pred cccccccCCCcchhhHHHHHHHhh----hccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccccccccc
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQY----AHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP 539 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p 539 (808)
|.+.+....+.++++.+..++.. .++ -+.+.+..+++.+..+|.+...-++.+|...+..++... ....+.|
T Consensus 790 -Isagl~gd~~~~~as~Ivai~~il~e~~~~--ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~-pe~~l~~ 865 (1176)
T KOG1248|consen 790 -ISAGLVGDSTRVVASDIVAITHILQEFKNI--LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF-PEECLSP 865 (1176)
T ss_pred -HHhhhcccHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-CHHHHhh
Confidence 44444455566666645444432 222 245789999999999999988889999999999999886 3678899
Q ss_pred chHHHHHHHHHHhhhhchhh---HHHHHHHHHHhcc-ccccchHHHHHHHHHH
Q 003608 540 ILPQLLDEFFKLMNEVENED---LVFTLETIVDKFG-EEMAPYALGLCQNLAA 588 (808)
Q Consensus 540 ~l~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~ 588 (808)
+++++|..++.+..+..... +-..++.++++|| +++.+++++.-..+..
T Consensus 866 ~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~ 918 (1176)
T KOG1248|consen 866 HLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLT 918 (1176)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHH
Confidence 99999999999888754433 6678899999998 4566777765555444
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=97.57 E-value=0.088 Score=61.19 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=65.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSV 505 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~--~~~~~~~l 505 (808)
.|...|--|+..++++... .+-+.+...+...+.+++|+||..|+.++.+.... +++. -..+++.+
T Consensus 117 ~Np~IRaLALRtLs~Ir~~---------~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~---~pelv~~~~~~~~L 184 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVS---------SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD---DMQLFYQQDFKKDL 184 (746)
T ss_pred CCHHHHHHHHHHHHcCCcH---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---CcccccccchHHHH
Confidence 4788999999999876432 12222333445567789999999999999996542 2222 12345556
Q ss_pred HhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 506 VSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 506 l~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
...|.|+++.|...|..+|..+.+..
T Consensus 185 ~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 185 VELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 66688999999999999999997653
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.12 Score=56.73 Aligned_cols=363 Identities=14% Similarity=0.219 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcc-hHHHHHHHhhc
Q 003608 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY-KSELERMLVQH 464 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~-~~~l~~~l~~~ 464 (808)
+|....+.........|++.+..+++.-.+.+++. .+-..|++.....|..+.++....+- ...++.+
T Consensus 33 v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-------~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~---- 101 (569)
T KOG1242|consen 33 VRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-------HNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEIL---- 101 (569)
T ss_pred hHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-------hhHHHhhhhHHHHHHHHHhccccCcchhHHHHHH----
Confidence 44444444455555566665555665555565542 26689999999999999998653221 1223332
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHH
Q 003608 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (808)
Q Consensus 465 v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~l 544 (808)
+..+..|.+.+|+...-|+.-+.-. .+. .--..+.+.+.+++......=|..|+.++..+..... ...+.+ ..+
T Consensus 102 -~~~~~tps~~~q~~~~~~l~~~~~~-~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-i~~~~~--~~~ 175 (569)
T KOG1242|consen 102 -LEELDTPSKSVQRAVSTCLPPLVVL-SKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-IESLKE--FGF 175 (569)
T ss_pred -HHhcCCCcHHHHHHHHHHhhhHHHH-hhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH-Hhhhhh--hhH
Confidence 3345667888998888888665421 111 1234555666666665555667788888888887642 333333 245
Q ss_pred HHHHHHHhhhhch----hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhccc-------------CCCC-----
Q 003608 545 LDEFFKLMNEVEN----EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAE-------------ADED----- 602 (808)
Q Consensus 545 l~~l~~ll~~~~~----~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~-------------~d~~----- 602 (808)
+..+...++.-++ +...-+.......+|....||...+...+...|....+... -++.
T Consensus 176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~l 255 (569)
T KOG1242|consen 176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLL 255 (569)
T ss_pred HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHh
Confidence 5555555543221 12333445555666777777777766666554422111000 0000
Q ss_pred -------CCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChh
Q 003608 603 -------ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLE 675 (808)
Q Consensus 603 -------~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~ 675 (808)
-.+.++......++.++.+... .|.......+.++|.+..++.+-..+..+.+...+..+.... -.|.
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~---ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi--dN~d 330 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADC---APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI--DNPD 330 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHh---chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh--ccHH
Confidence 0001222233344444433322 233444455778888888886555566666655554443211 1355
Q ss_pred hhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHH
Q 003608 676 MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQ 755 (808)
Q Consensus 676 l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~ 755 (808)
+..+.|.+.+++.+ ..-+.++++..| +..+|+..-++.-+..+.-++.+-+.....+-. ..++.++.-+..
T Consensus 331 I~~~ip~Lld~l~d-p~~~~~e~~~~L------~~ttFV~~V~~psLalmvpiL~R~l~eRst~~k--r~t~~IidNm~~ 401 (569)
T KOG1242|consen 331 IQKIIPTLLDALAD-PSCYTPECLDSL------GATTFVAEVDAPSLALMVPILKRGLAERSTSIK--RKTAIIIDNMCK 401 (569)
T ss_pred HHHHHHHHHHHhcC-cccchHHHHHhh------cceeeeeeecchhHHHHHHHHHHHHhhccchhh--hhHHHHHHHHHH
Confidence 67778888888743 222455544433 445566544556777888888888864332221 345555555555
Q ss_pred HcC--cCcccchHHHHHHHHHHHhhc
Q 003608 756 NCK--GQVDHWVEPYLRITVERLRRA 779 (808)
Q Consensus 756 ~~~--~~~~~~l~~il~~~~~~l~~~ 779 (808)
-.. ..++||++.+++.+=..+.+.
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~ 427 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDA 427 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCC
Confidence 442 236667766666555555443
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.56 E-value=0.01 Score=67.85 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=119.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHH-HHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRK-ALHSVV 506 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~-~~~~ll 506 (808)
+|...+-.|+.+++.++.. .+-+-+.+.|...+.+++|++|..|+.++.++... .++.... +++.+.
T Consensus 91 ~n~~~~~lAL~~l~~i~~~---------~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~---~p~~~~~~~~~~l~ 158 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIRTP---------EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRK---DPDLVEDELIPKLK 158 (526)
T ss_dssp SSHHHHHHHHHHHHHH-SH---------HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CHCCHHGGHHHHHH
T ss_pred CCHHHHHHHHhhhhhhccc---------chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHh
Confidence 4778999999999987732 12222344456667789999999999999998653 3444455 788899
Q ss_pred hcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchH--HHHHH
Q 003608 507 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYA--LGLCQ 584 (808)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~--~~l~~ 584 (808)
+.+.|+++.|+..|+.++..+ .. .++...+.++.++..+.+++...+.-....+++.+....... .... ..+++
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i-~~--~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-~~~~~~~~~i~ 234 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEI-KC--NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-PEDADKNRIIE 234 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHH-HC--THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-HHHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHH-cc--CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-hhhhhHHHHHH
Confidence 999999999999999999988 22 123333777788888777765443322333344333222211 1111 23333
Q ss_pred HHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHH
Q 003608 585 NLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSY 664 (808)
Q Consensus 585 ~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~ 664 (808)
.+.. .++.. . ..-.++++..++.. ...+. +...+.+.+...+........--+++.+..
T Consensus 235 ~l~~----~l~s~---------~---~~V~~e~~~~i~~l-~~~~~----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 235 PLLN----LLQSS---------S---PSVVYEAIRLIIKL-SPSPE----LLQKAINPLIKLLSSSDPNVRYIALDSLSQ 293 (526)
T ss_dssp HHHH----HHHHH---------H---HHHHHHHHHHHHHH-SSSHH----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHH----Hhhcc---------c---cHHHHHHHHHHHHh-hcchH----HHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence 3332 33211 0 11245666655533 33333 335566666666665444455556666666
Q ss_pred hhhc
Q 003608 665 MTFF 668 (808)
Q Consensus 665 ~~~~ 668 (808)
+...
T Consensus 294 l~~~ 297 (526)
T PF01602_consen 294 LAQS 297 (526)
T ss_dssp HCCH
T ss_pred hhcc
Confidence 6543
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0056 Score=66.14 Aligned_cols=260 Identities=16% Similarity=0.202 Sum_probs=153.2
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCc-c-hHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccc--cCChhHHHHHHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEP-Y-KSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHS 504 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~-~-~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~--~~~~~~~~~~~~~ 504 (808)
+...+.-+-+++..+|.+-.+... + ...-.+.|. ..+.+++.-++..|.|.+|.++... +++.-.-..+++.
T Consensus 123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi----~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~p 198 (514)
T KOG0166|consen 123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI----QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDP 198 (514)
T ss_pred ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH----HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHH
Confidence 456677777788888877544211 0 011112222 2456899999999999999997531 2222234556677
Q ss_pred HHhcCCCCCC-chHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhc---cccccc-hH
Q 003608 505 VVSGLRDPEL-PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKF---GEEMAP-YA 579 (808)
Q Consensus 505 ll~~l~~~~~-~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~---~~~i~p-~~ 579 (808)
++..+..++. .....+.++|.++|..++..+.+ ..+.++++.|..++...+.+.+.++.-++..-. .+.+.- .-
T Consensus 199 Ll~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 199 LLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7777765443 56668999999999987422222 356788888999998887776666555444222 222110 01
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHccc-ChhhHHHHH
Q 003608 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT-DGQEVFEEV 658 (808)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~-~~~~~~e~~ 658 (808)
..++.+|+. ++...+. ......+.++++|+..- +.+...-+-...+|.+..++.+ +....-.++
T Consensus 278 ~gvv~~LV~----lL~~~~~---------~v~~PaLRaiGNIvtG~--d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 278 AGVVPRLVD----LLGHSSP---------KVVTPALRAIGNIVTGS--DEQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred ccchHHHHH----HHcCCCc---------ccccHHHhhccceeecc--HHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 123344443 4443221 12234677777765442 2233333557788999999884 444567788
Q ss_pred HHHHHHhhhcCC-CCChhh-hhhHHHHHHHhhhhHHhhhhhhhhhhhhhhcc
Q 003608 659 LEIVSYMTFFSP-TISLEM-WSLWPLMMEALADWAIDFFPNILVPLDNYISR 708 (808)
Q Consensus 659 l~ll~~~~~~~~-~~~p~l-~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~ 708 (808)
+=.++++....+ ++..-+ -.++|.+++++...+++.-.+..=.+.|....
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 888888876432 222212 26788898888765555555544444444333
No 43
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.043 Score=61.15 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=67.8
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
+|...|-.|+.+++++--.+ +.++..-.|.....++.|++|..|...+-+..+. +++...++...+=.
T Consensus 120 pN~LiRasALRvlSsIRvp~---------IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL---d~e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRVPM---------IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL---DPEQKDQLEEVIKK 187 (968)
T ss_pred CcHHHHHHHHHHHHhcchhh---------HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC---ChhhHHHHHHHHHH
Confidence 47789999999998764321 2233333344455688999999999999887654 33444577777777
Q ss_pred cCCCCCCchHHhHHHHHHHHHHhc
Q 003608 508 GLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
.|.|.++.|--+|+.|+..+|.+.
T Consensus 188 LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 188 LLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred HhcCCCCcchhHHHHHHHHhchhH
Confidence 888999999999999999998663
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.29 E-value=0.0007 Score=56.50 Aligned_cols=92 Identities=17% Similarity=0.242 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcC
Q 003608 432 QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGL 509 (808)
Q Consensus 432 ~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~ll~~l 509 (808)
.|.|++.++++++.++.+. ....++.++. .|+..++++++.+|..||-.+...++.. +.. .++.+++..+...+
T Consensus 2 ~R~ggli~Laa~ai~l~~~--~~~~l~~Il~-pVL~~~~D~d~rVRy~AcEaL~ni~k~~-~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD--ISKYLDEILP-PVLKCFDDQDSRVRYYACEALYNISKVA-RGEILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHh--HHHHHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 5889999999999998764 3334444443 4566788999999999999999987642 232 57899999999999
Q ss_pred CCCCCchHHhHHHHHHHHH
Q 003608 510 RDPELPVRVDSVFALRSFV 528 (808)
Q Consensus 510 ~~~~~~V~~~A~~al~~~~ 528 (808)
.|+++.||..| ..|.+++
T Consensus 78 ~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 78 ADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred cCCchhHHHHH-HHHHHHh
Confidence 99999999666 5555544
No 45
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0031 Score=68.02 Aligned_cols=223 Identities=14% Similarity=0.211 Sum_probs=129.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchH---HHHHHHhhcccccccCCCc-chhhHHHHHHHhhhccc-cCCh-hHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKS---ELERMLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHIN-FSDQ-NNFRKA 501 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~---~l~~~l~~~v~~~l~~~~~-~lr~~a~~~l~~~~~~~-~~~~-~~~~~~ 501 (808)
.+-..+|-+.+++|.++.....-.++.- -+.+++ ..++.+.+ .+.+.+.|+++.++... ..++ +....+
T Consensus 164 ~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl-----~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 164 PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL-----RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH-----HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 3568999999999999977544222211 112222 22334444 57888999999998765 2233 668999
Q ss_pred HHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch-HHHHHHHHHHhhhhchhhHHHHHHHHHHh-cc-ccccch
Q 003608 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLLDEFFKLMNEVENEDLVFTLETIVDK-FG-EEMAPY 578 (808)
Q Consensus 502 ~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l-~~ll~~l~~ll~~~~~~~l~~~l~~iv~~-~~-~~i~p~ 578 (808)
++.+..++.+.|.-|...||+|+..+.+.. .+.+.-.+ -.++.+|..++...+.....-+|.++... .| +.-+..
T Consensus 239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~--ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 239 LPALLRLLHSTDEEVLTDACWALSYLTDGS--NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence 999999999988889999999999998875 34433322 23566666777765544333333333221 11 111110
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHH
Q 003608 579 ALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEV 658 (808)
Q Consensus 579 ~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~ 658 (808)
+ +-..+...+..+...... + . .+..+.=++++|.. +...++-.-+..-++|.+..+++....+.--++
T Consensus 317 v--i~~~~L~~l~~ll~~s~~------~-~-ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 317 V--INSGALPVLSNLLSSSPK------E-S-IKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA 384 (514)
T ss_pred H--HhcChHHHHHHHhccCcc------h-h-HHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence 0 001112223334332111 1 1 12223344555543 222233333456799999999987777777777
Q ss_pred HHHHHHhhhcC
Q 003608 659 LEIVSYMTFFS 669 (808)
Q Consensus 659 l~ll~~~~~~~ 669 (808)
.=.+++++..+
T Consensus 385 awaIsN~ts~g 395 (514)
T KOG0166|consen 385 AWAISNLTSSG 395 (514)
T ss_pred HHHHHhhcccC
Confidence 77777776543
No 46
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.87 Score=53.23 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhc---hh-----hHHHHHHHHHHHHHH
Q 003608 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQ---DQ-----QVYGALFVLRILSRK 153 (808)
Q Consensus 84 e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~---s~-----~~~~~L~~L~~i~~~ 153 (808)
+--+.+-+.|++++.+.+..||-..|--+++|+.+. | ++|.++.+...- ++ ..||++.+|.++..+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 345677888888889999999999999999999986 4 445444443321 22 579999999998863
No 47
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.05 E-value=0.00041 Score=51.51 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=43.3
Q ss_pred cchhhHHHHHHHhhhccccC-ChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHH
Q 003608 474 GHLRAKAAWVAGQYAHINFS-DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (808)
Q Consensus 474 ~~lr~~a~~~l~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~ 527 (808)
|.+|..|+|++|..++.... -..+...+++.++..|+|++..||..|+.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 45899999999997653211 1257899999999999988889999999999764
No 48
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.035 Score=61.24 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=108.7
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
.|+..+++.-|++|-+|+.++=+... +=|+.+...++.+.+.|.|+++.|+.+|+..++.+.... +....|..|.
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFL---kYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn--PknyL~LAP~ 222 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFL---KYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN--PQNYLQLAPL 222 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHH---hhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC--CcccccccHH
Confidence 34446678889999999988744221 224678999999999999999999999999999998774 6666677776
Q ss_pred HHHHHHHHhhhhchh-hHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 003608 544 LLDEFFKLMNEVENE-DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 622 (808)
Q Consensus 544 ll~~l~~ll~~~~~~-~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li 622 (808)
+.. ++-+.++. -+..++. -|+ .++|+-|.+-..|...+.+++++. .+.+-+.+|+.+++
T Consensus 223 ffk----llttSsNNWmLIKiiK----LF~-aLtplEPRLgKKLieplt~li~sT-----------~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 223 FYK----LLVTSSNNWVLIKLLK----LFA-ALTPLEPRLGKKLIEPITELMEST-----------VAMSLLYECVNTVV 282 (877)
T ss_pred HHH----HHhccCCCeehHHHHH----HHh-hccccCchhhhhhhhHHHHHHHhh-----------HHHHHHHHHHHHhe
Confidence 554 44433332 2333333 332 366777777777777666676531 12345688888888
Q ss_pred Hh-h-cCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhh
Q 003608 623 ES-V-SRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF 667 (808)
Q Consensus 623 ~~-~-~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~ 667 (808)
.. + ...|+...+ .+.++.-+...++..+..+-=-++-.++-++.
T Consensus 283 a~s~s~g~~d~~as-iqLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 283 AVSMSSGMSDHSAS-IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred eehhccCCCCcHHH-HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 65 2 112222221 24445555555544333222223334444443
No 49
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.98 E-value=0.36 Score=53.49 Aligned_cols=189 Identities=11% Similarity=0.097 Sum_probs=105.9
Q ss_pred CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 003608 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (808)
Q Consensus 471 ~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ 550 (808)
.+.+-.+.=|.-+|.+|-.. -|++-...+.+++....|.+..||..|..+|-.+|.+.+ .+++.+.+.|.+
T Consensus 33 kg~~k~K~Laaq~I~kffk~---FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~------~~v~kvaDvL~Q 103 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKH---FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP------EHVSKVADVLVQ 103 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH------HHHhHHHHHHHH
Confidence 34677888899999998763 356789999999999999999999999999999997631 467788888889
Q ss_pred HhhhhchhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChH
Q 003608 551 LMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPH 630 (808)
Q Consensus 551 ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~ 630 (808)
+++.-+..++..+=.+++..+.-+-.--...++.+ +......| ...+..++..|..=+..+...--
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~-------i~~~~~~d-------e~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQ-------IESSKSGD-------EQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------HH---HS--------HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-------HHhcccCc-------hHHHHHHHHHHHHHHhhCcHHHh
Confidence 99876555555554555554443211122222222 22111111 12445566666655555532100
Q ss_pred H-HHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCC-----CCChhhhhhHHHHHHH
Q 003608 631 L-FVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-----TISLEMWSLWPLMMEA 686 (808)
Q Consensus 631 ~-~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~-----~~~p~l~~~~~~l~~~ 686 (808)
. -..++..+...|..+++. +..+=+.++-.++...+ .-.+...++++.+.+.
T Consensus 170 ~p~~E~e~~i~~~ikkvL~D----VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQ 227 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQD----VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQ 227 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT------HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHH
Confidence 0 024678888889999852 22233333333333322 2234456777766654
No 50
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.96 E-value=0.19 Score=56.56 Aligned_cols=371 Identities=14% Similarity=0.164 Sum_probs=191.8
Q ss_pred HHHHHHHHHHhc-ccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccc
Q 003608 390 SMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPE 468 (808)
Q Consensus 390 a~~ll~~l~~~~-~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~ 468 (808)
+.++|..+.+.. +....+.+.+++...|.. ++...|.-++..++.++.+-........+ ..++ ..|+..
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h--------~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~-~~i~~~ 127 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLTH--------PSPKVRRLALKQLGRIARHSEGAAQLLVD-NELL-PLIIQC 127 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHH-HHHHHH
Confidence 446677777654 445566677777777764 36789999999998876542210000000 0111 224445
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCChhHHHHH-----HHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 469 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-----LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 469 l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~-----~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
+.+++.-+...|+.++..+++.. ..+..+ ...+.+.+..++..+|..+...+..++... +....++..
T Consensus 128 L~~~d~~Va~~A~~~L~~l~~~~----~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S---~~~~~~~~~ 200 (503)
T PF10508_consen 128 LRDPDLSVAKAAIKALKKLASHP----EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS---PEAAEAVVN 200 (503)
T ss_pred HcCCcHHHHHHHHHHHHHHhCCc----hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC---HHHHHHHHh
Confidence 66788888999999998887642 122333 566666665556678888888888887653 333344443
Q ss_pred --HHHHHHHHhhhhchhhH--HHHHHHHHHhc-cccccchHHH--HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 003608 544 --LLDEFFKLMNEVENEDL--VFTLETIVDKF-GEEMAPYALG--LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (808)
Q Consensus 544 --ll~~l~~ll~~~~~~~l--~~~l~~iv~~~-~~~i~p~~~~--l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (808)
+++.++..+.. .|.+ ..+++.+.+.. .++-..|..+ +++.|. +.+.....|| .-..+...+.+.
T Consensus 201 sgll~~ll~eL~~--dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~----~~l~~~~~dp---~~~~~~l~g~~~ 271 (503)
T PF10508_consen 201 SGLLDLLLKELDS--DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLS----NLLQDSEEDP---RLSSLLLPGRMK 271 (503)
T ss_pred ccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHH----HHHhccccCC---cccchhhhhHHH
Confidence 77766666655 2222 23333333322 2222222222 333333 3444433333 123344455666
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC-------CCCChhhhhhHHHHHHHhhh
Q 003608 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-------PTISLEMWSLWPLMMEALAD 689 (808)
Q Consensus 617 ~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~-------~~~~p~l~~~~~~l~~~~~~ 689 (808)
..+++... .|.......+.++..+...++..+....+-|++-++.+-... ..-++.+...+..+.....+
T Consensus 272 f~g~la~~---~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~ 348 (503)
T PF10508_consen 272 FFGNLARV---SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS 348 (503)
T ss_pred HHHHHHhc---ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence 66665544 233232333556655666666667777788888887665322 11133333333333333322
Q ss_pred hHHhhhhhhhhhhhhhhccCcccccccCCc---hHHHHHHH---------HHHHHhcCCCCCCCccCchhHHHHHHHHHc
Q 003608 690 WAIDFFPNILVPLDNYISRGTAHFLTCKEP---DYQQSLWS---------MVSSIMADKNLEDGDIEPAPKLIEVVFQNC 757 (808)
Q Consensus 690 ~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~---~~~~~l~~---------~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~ 757 (808)
...+.--.++..+.+.+..+++. .+. ...+..|+ ++..+++.| ++|- +..+.+++..+..+-
T Consensus 349 ~~~~lk~r~l~al~~il~~~~~~----~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~el-r~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 349 GSTELKLRALHALASILTSGTDR----QDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPEL-RCAAYRLLQALAAQP 422 (503)
T ss_pred CchHHHHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHH-HHHHHHHHHHHhcCH
Confidence 22333444455555555444331 000 11111111 233333333 2222 456778888887775
Q ss_pred CcC-cccchHHHHHHHHHHHhh--chhhHHHHHHHHHHHHh
Q 003608 758 KGQ-VDHWVEPYLRITVERLRR--AEKSYLKCLLVQVVSFH 795 (808)
Q Consensus 758 ~~~-~~~~l~~il~~~~~~l~~--~~~~~~~~~~~~~i~~~ 795 (808)
.+. .----++++..++.|-.. +..++.|--++..+..+
T Consensus 423 Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 423 WGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 443 122335677777666543 34566665666666533
No 51
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.38 Score=51.97 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh--hHHHHHHHHH
Q 003608 494 DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE--DLVFTLETIV 568 (808)
Q Consensus 494 ~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~--~l~~~l~~iv 568 (808)
+..+.+.+++-++.|++|++..||.+||.++-+++... +..+.+|.+.+...++++....+.. .....+..++
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~--k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLi 152 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA--KGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLI 152 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh--ccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHH
Confidence 44589999999999999999999999999999999885 7888899999999999998765432 2344444443
No 52
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=1.1 Score=50.71 Aligned_cols=245 Identities=11% Similarity=0.168 Sum_probs=147.2
Q ss_pred ccccCCCcchhhHHHHHHHhhhcc-------ccCCh---hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccc
Q 003608 467 PEFSSPVGHLRAKAAWVAGQYAHI-------NFSDQ---NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536 (808)
Q Consensus 467 ~~l~~~~~~lr~~a~~~l~~~~~~-------~~~~~---~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~ 536 (808)
..|..+.+.|..-|..++-+.-.. .|..+ .+...++..++..++-+...=-.+-.+|+-+.+... ++.
T Consensus 505 ~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~--~~~ 582 (960)
T KOG1992|consen 505 RFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL--QSA 582 (960)
T ss_pred HhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC--HHh
Confidence 345566777777777777665321 23222 244667777777776555555668899999999874 788
Q ss_pred cccchHHHHHHHHHHhhhhch----h----hHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhH
Q 003608 537 IRPILPQLLDEFFKLMNEVEN----E----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 608 (808)
Q Consensus 537 l~p~l~~ll~~l~~ll~~~~~----~----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 608 (808)
+.|+.+.++..|.++..++.. . .+.++++.++...++.=..-...+...|...|..+..+. -.
T Consensus 583 i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD---------I~ 653 (960)
T KOG1992|consen 583 IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED---------IQ 653 (960)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 889999999999998876521 1 266677777766554321133345556665566655431 12
Q ss_pred HHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHccc---ChhhHHHHHHHHHHHhhhcCCC-CC--hhhhhhHH
Q 003608 609 LAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTT---DGQEVFEEVLEIVSYMTFFSPT-IS--LEMWSLWP 681 (808)
Q Consensus 609 ~~~~~~l~~i~~li~~~~~-~~~~~~~~~~~~~p~i~~~l~~---~~~~~~e~~l~ll~~~~~~~~~-~~--p~l~~~~~ 681 (808)
-+..+.+..++-++...+. .| +.+.|++..++++ +..+-+.....++..+++...+ +. ..+-.+++
T Consensus 654 EfiPYvfQlla~lve~~~~~ip-------~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLG 726 (960)
T KOG1992|consen 654 EFIPYVFQLLAVLVEHSSGTIP-------DSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILG 726 (960)
T ss_pred HHHHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHH
Confidence 2556889999988887543 33 4566666667765 3345677888888888886532 22 11223333
Q ss_pred HHHHHhh-----hhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCC
Q 003608 682 LMMEALA-----DWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLED 740 (808)
Q Consensus 682 ~l~~~~~-----~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~ 740 (808)
.+-+++. ..|++.+..+++.+. +..+. +|+..|+..+-+-+++++.+.
T Consensus 727 ifqkLiaSka~Dh~GF~LLn~i~~~~~------~~~~~-----py~k~i~~llf~RlqnskT~k 779 (960)
T KOG1992|consen 727 IFQKLIASKANDHHGFYLLNTIIESIP------PNELA-----PYMKQIFGLLFQRLQNSKTEK 779 (960)
T ss_pred HHHHHhcCcccchhHHHHHHHHHhcCC------Hhhhh-----HHHHHHHHHHHHHHhccCcHH
Confidence 3333332 335555555544432 23222 677777766655565554443
No 53
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.86 E-value=0.14 Score=55.47 Aligned_cols=216 Identities=10% Similarity=0.124 Sum_probs=115.2
Q ss_pred HHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccccccccc-chHHHHHHHHHHhhhhchhh--HHHHHHHHHHhccccc
Q 003608 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-ILPQLLDEFFKLMNEVENED--LVFTLETIVDKFGEEM 575 (808)
Q Consensus 499 ~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p-~l~~ll~~l~~ll~~~~~~~--l~~~l~~iv~~~~~~i 575 (808)
..+...+++.+.|+..+-|..++.+..+.+.... ...+.. .-..++..++..+++.+.+. ++.+.+++....+-..
T Consensus 520 ~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg-~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~ 598 (975)
T COG5181 520 PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLG-RLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRG 598 (975)
T ss_pred hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcc-cccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhcc
Confidence 4566677777788777788888888888876653 233332 23446666666666654432 4455555555555556
Q ss_pred cchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHH
Q 003608 576 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 655 (808)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~ 655 (808)
.||...+++.... .+.+.. | +...-+..+...+..+++++++... +. .+=-++.+.+..+..+.+
T Consensus 599 kp~l~~ivStiL~----~L~~k~--p----~vR~~aadl~~sl~~vlk~c~e~~~-l~----klg~iLyE~lge~ypEvL 663 (975)
T COG5181 599 KPHLSMIVSTILK----LLRSKP--P----DVRIRAADLMGSLAKVLKACGETKE-LA----KLGNILYENLGEDYPEVL 663 (975)
T ss_pred CcchHHHHHHHHH----HhcCCC--c----cHHHHHHHHHHHHHHHHHhcchHHH-HH----HHhHHHHHhcCcccHHHH
Confidence 6888877776554 444322 2 2222233344455555555554221 11 122223333334444556
Q ss_pred HHHHHHHHHhhhcC--CCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHh
Q 003608 656 EEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIM 733 (808)
Q Consensus 656 e~~l~ll~~~~~~~--~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l 733 (808)
...+.-++.+.... .+..|-..+++|.+..++.+--.....+.+.++.-....+|+.+- -.+++...|+.+.-+-
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~---~rEWMRIcfeLvd~Lk 740 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG---VREWMRICFELVDSLK 740 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC---HHHHHHHHHHHHHHHH
Confidence 66665555554421 344455566666666666432223444455555555556666322 1256666666655444
No 54
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.79 E-value=0.087 Score=66.78 Aligned_cols=332 Identities=11% Similarity=0.033 Sum_probs=181.8
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHH-HHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSEL-ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSV 505 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l-~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~l 505 (808)
+-..++.+..++..++.+-.+. ...+ ..-..+.++..|.++++-+|..|+|+++..+...-.+. -.-...++.+
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~---~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGL---WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHH---HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 3467777777887777441110 0000 00001122234556778899999999999875321000 0124678899
Q ss_pred HhcCCCCCCchHHhHHHHHHHHHHhcccccccccchH--HHHHHHHHHhhhhchhh---HHHHHHHHHHhccccccchHH
Q 003608 506 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP--QLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYAL 580 (808)
Q Consensus 506 l~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~--~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~ 580 (808)
++.|.+++..++..|++||.+++.+. +..+..+. ..+..|+++++..+.+. ...+|..++.....+.
T Consensus 494 V~LL~s~~~~iqeeAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~----- 565 (2102)
T PLN03200 494 VQLLETGSQKAKEDSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT----- 565 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH-----
Confidence 99998888899999999999998642 33333331 35555666676554433 4555555554433221
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHH-HHHhhHHHHHHHHcccChhhHHHHHH
Q 003608 581 GLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFV-QIEPTLLPIMRRMLTTDGQEVFEEVL 659 (808)
Q Consensus 581 ~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~-~~~~~~~p~i~~~l~~~~~~~~e~~l 659 (808)
+..++. ++.. +++ + ....+++.++.++.....+..... ......+|.+...++++...-.+++.
T Consensus 566 --I~~Lv~----LLls--dd~-----~--~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa 630 (2102)
T PLN03200 566 --ISQLTA----LLLG--DLP-----E--SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAA 630 (2102)
T ss_pred --HHHHHH----HhcC--CCh-----h--HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHH
Confidence 122332 3321 111 1 233568888888765543221111 11245788999999888889999999
Q ss_pred HHHHHhhhcCCCCChh--hhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHH-HHHHHHHHhcCC
Q 003608 660 EIVSYMTFFSPTISLE--MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQS-LWSMVSSIMADK 736 (808)
Q Consensus 660 ~ll~~~~~~~~~~~p~--l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~-l~~~~~~~l~~~ 736 (808)
.++..+....+..... .-...|.++.++...+.+...+....|.+...-+.+.-. ..+++. +...+.+++..+
T Consensus 631 ~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~----~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 631 SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK----VSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH----HHHHHcCCHHHHHHHHhCC
Confidence 9999998755443222 235788888888766677777777777776653322100 011111 233344555432
Q ss_pred CCCCCccCchhHHHHHHHHHcCcCcccch-HHHHHHHHHHHhhc--hhhHHHHHHHHHHH
Q 003608 737 NLEDGDIEPAPKLIEVVFQNCKGQVDHWV-EPYLRITVERLRRA--EKSYLKCLLVQVVS 793 (808)
Q Consensus 737 ~~~~~~~~~a~~ll~~ii~~~~~~~~~~l-~~il~~~~~~l~~~--~~~~~~~~~~~~i~ 793 (808)
. ..-...+...+..++....+. ..+. ..++..++..|+.. +.+.-..+.+.-++
T Consensus 707 d--~~v~e~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 707 S--IEVAEQAVCALANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred C--hHHHHHHHHHHHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 1 111234555556555543322 1111 23455566666542 23344444443343
No 55
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.76 E-value=0.017 Score=55.01 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 003608 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 509 (808)
Q Consensus 430 ~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l 509 (808)
+..|-.++.++|-++-..+ .-+++++ +.+...|++++|.+|..|+.++++.....+- ..-..++..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~------~~ve~~~-~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP------NLVEPYL-PNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc------HHHHhHH-HHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--eehhhhhHHHHHHH
Confidence 4566777778886665432 2344544 3455678899999999999999997542211 12345556777788
Q ss_pred CCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh-----hchhhHHHHHHHHHHhccccccchHHHHHH
Q 003608 510 RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-----VENEDLVFTLETIVDKFGEEMAPYALGLCQ 584 (808)
Q Consensus 510 ~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~-----~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (808)
.|+++.||..|...+..+.... .++.+...+++++..+-...+. .+.+.....+..+...+.+ ......+++
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~-~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~ 149 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKR-NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVE 149 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHH
Confidence 9999999999999999998774 3677777888877766654432 2333456667777777663 134456666
Q ss_pred HHHHHHHH
Q 003608 585 NLAAAFWR 592 (808)
Q Consensus 585 ~L~~~~~~ 592 (808)
.|++-+..
T Consensus 150 kl~~~~~~ 157 (178)
T PF12717_consen 150 KLCQRFLN 157 (178)
T ss_pred HHHHHHHH
Confidence 66664443
No 56
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.56 E-value=0.13 Score=53.64 Aligned_cols=175 Identities=14% Similarity=0.193 Sum_probs=110.3
Q ss_pred HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccccc
Q 003608 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLN 535 (808)
Q Consensus 456 ~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~ 535 (808)
.++.++.+.|.|.+.++++-+|.+|+.|+|-++-. +.+...+.+..+...++..+..|+..|..++-.++-... .+
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll---d~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g-~~ 98 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL---DKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG-ID 98 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ch
Confidence 45688888889999999999999999999999854 334566667777777754577899999999988876542 22
Q ss_pred ccc--------cchHHHHHHHHHHhhhhchhhHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHhcccCCCCCCCh
Q 003608 536 EIR--------PILPQLLDEFFKLMNEVENEDLVFTLETIVDKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDP 606 (808)
Q Consensus 536 ~l~--------p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~ 606 (808)
.+. .....+++.+.+.+...+.+-...+.+.+++-+ .+.+.+ -+.++..|+- .|=+....+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll----~yF~p~t~~----- 168 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLL----LYFNPSTED----- 168 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHH----HHcCcccCC-----
Confidence 222 234567777777777654444455566666654 333433 3455555543 332222111
Q ss_pred hHHHHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHHcc
Q 003608 607 GALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRMLT 648 (808)
Q Consensus 607 ~~~~~~~~l~~i~~li~~~~-~~~~~~~~~~~~~~p~i~~~l~ 648 (808)
+. .+-++++-.+.... .+++.-..+++.+.|.+..+.+
T Consensus 169 ~~----~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 169 NQ----RLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred cH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 23455555555442 3444445566777888777765
No 57
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.52 E-value=0.077 Score=57.86 Aligned_cols=202 Identities=16% Similarity=0.229 Sum_probs=121.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHhhHHHHHHHHcccC
Q 003608 572 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-LPHLFVQIEPTLLPIMRRMLTTD 650 (808)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~-~~~~~~~~~~~~~p~i~~~l~~~ 650 (808)
++++.|++.++.++|.. +++.....| +. ++..|+-+++..+++ ..+....+.+.+..++..+..++
T Consensus 17 ~~di~p~~~~ll~~Lf~----~i~~~~s~E-----Ne----ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP 83 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFA----LIEKPGSAE-----NE----YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP 83 (435)
T ss_dssp GGGTTCCHHHHHHHHHH----HHHTT-STC------H----HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-
T ss_pred HHHhhhhHHHHHHHHHH----HHhcCCCcc-----ch----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999999999987 444322111 22 466777777766654 23445556677777777777654
Q ss_pred -hhhHHHHHHHHHHHhhhcCCCCChh-----hhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCc-ccccccCCchHHH
Q 003608 651 -GQEVFEEVLEIVSYMTFFSPTISLE-----MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGT-AHFLTCKEPDYQQ 723 (808)
Q Consensus 651 -~~~~~e~~l~ll~~~~~~~~~~~p~-----l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~-~~~l~~~~~~~~~ 723 (808)
...|--+.|+-++.++++...-.|. --.+||.+..++.++-.++.+-++.+|-..+...+ +.+- +.|.+
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p----~~y~~ 159 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP----DAYKQ 159 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S------TTTGG
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc----HHHHH
Confidence 4578888999999999875443343 45789999999988888899988888887777766 2221 13333
Q ss_pred HHHHHHHHHhcCCCCCCC-ccC-chhHHHHHHHHHcCcCc--ccchHHHHHHHHHHHhhchhhHHHHHHHHHHHHh
Q 003608 724 SLWSMVSSIMADKNLEDG-DIE-PAPKLIEVVFQNCKGQV--DHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFH 795 (808)
Q Consensus 724 ~l~~~~~~~l~~~~~~~~-~~~-~a~~ll~~ii~~~~~~~--~~~l~~il~~~~~~l~~~~~~~~~~~~~~~i~~~ 795 (808)
.+ .-++. +...+. +.. ...+++.+++.+.+..+ ...+.+++...=+-+.++.+....-.+++.|+..
T Consensus 160 L~----~~Ll~-p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~ 230 (435)
T PF03378_consen 160 LF----PPLLS-PALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVEN 230 (435)
T ss_dssp GH----HHHTS-GGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred HH----HHHcC-cchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH
Confidence 32 23332 232222 222 34579999999988774 3688888887644444443333322345554443
No 58
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.50 E-value=0.13 Score=52.06 Aligned_cols=242 Identities=13% Similarity=0.122 Sum_probs=130.7
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccC---ChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch
Q 003608 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (808)
Q Consensus 465 v~~~l~~~~~~lr~~a~~~l~~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (808)
+.+.|+++++..|++|+.+++..-+-..+ +.+...-++....+.+.|.. .-..|..++..+.... ..-....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~--~~~~~l~gl~~L~~~~---~~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA--CVQPALKGLLALVKMK---NFSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh--hHHHHHHHHHHHHhCc---CCChhhH
Confidence 45667888999999999999876442211 22446777788888885543 2334477777777443 2222235
Q ss_pred HHHHHHHHHHhhhh---ch--hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHH
Q 003608 542 PQLLDEFFKLMNEV---EN--EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLR 616 (808)
Q Consensus 542 ~~ll~~l~~ll~~~---~~--~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 616 (808)
..+++.+++-.+-. .. -.....+..+++.+.+.+.....+.+..+++ .++ ++.|| .+ ...+++
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~----~~~-gEkDP----Rn---Ll~~F~ 146 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQ----LID-GEKDP----RN---LLLSFK 146 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHH----Hhc-cCCCH----HH---HHHHHH
Confidence 56666665432211 11 1267788888888877665555555554443 544 23344 22 234566
Q ss_pred HHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccCh-h--h-HHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhHH
Q 003608 617 AISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-Q--E-VFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAI 692 (808)
Q Consensus 617 ~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~-~--~-~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~ 692 (808)
.+..++....- ++....+.+.+..++=-.+.+.. . . -.++--.-+...+..++.+.| ..+|.+++.+.+...
T Consensus 147 l~~~i~~~~~~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~---~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 147 LLKVILQEFDI-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP---FAFPLLLEKLDSTSP 222 (262)
T ss_pred HHHHHHHhccc-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH---HHHHHHHHHHcCCCc
Confidence 66666665542 22222222333322222233321 1 1 123333334444433333333 468888888865544
Q ss_pred hhhhhhhhhhhhhhc-cCcccccccCCchHHHHHHHHHHHH
Q 003608 693 DFFPNILVPLDNYIS-RGTAHFLTCKEPDYQQSLWSMVSSI 732 (808)
Q Consensus 693 ~~~~~~~~~L~~~i~-~~~~~~l~~~~~~~~~~l~~~~~~~ 732 (808)
....+.+..|...+. +|++.+. +|...+++.++.-
T Consensus 223 ~~K~D~L~tL~~c~~~y~~~~~~-----~~~~~iw~~lk~E 258 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYGADSLS-----PHWSTIWNALKFE 258 (262)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHH-----HHHHHHHHHHHHH
Confidence 444555555544444 4666655 7788887766543
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.44 E-value=0.96 Score=49.66 Aligned_cols=281 Identities=19% Similarity=0.267 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhcc-cCCCCCC-Ccc---hhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 389 ASMDFVSELVRKRGKENLQKFIQFIVGIFKR-YDETPVE-YKP---YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 389 ~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~-~~~~~~~-~~~---~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
.+++++..++.+.+.+.=+.+++-+...+.. ....|.. ..+ +..+.......+.++ ++.+...+. +...++..
T Consensus 116 ~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~-~l~~~~~~~-~~~~ll~~ 193 (415)
T PF12460_consen 116 LLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILC-SLRKDVSLP-DLEELLQS 193 (415)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHH-cCCcccCcc-CHHHHHHH
Confidence 3556677777766543333344433333321 0001111 011 233333333333333 444432221 33344433
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC-CCCCCchHHhHHHHHHHHHHhcccccccccchH
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l-~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~ 542 (808)
.+--..+..++..|..++.+++-... ++.+.+.+..++......+ ...+...+..+...+-.+....-.+. .|...
T Consensus 194 l~~~~~~~~~~~~~~~~~~~la~LvN-K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~--~~~~~ 270 (415)
T PF12460_consen 194 LLNLALSSEDEFSRLAALQLLASLVN-KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG--HPLAT 270 (415)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC--CchHH
Confidence 22112334568899999999988765 3445556778888887777 33344455555555544433221111 26677
Q ss_pred HHHHHHHHHhhhhchh-hHHHHHHHHHHh--------ccccccc-hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHH
Q 003608 543 QLLDEFFKLMNEVENE-DLVFTLETIVDK--------FGEEMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAV 612 (808)
Q Consensus 543 ~ll~~l~~ll~~~~~~-~l~~~l~~iv~~--------~~~~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~ 612 (808)
.+++.++.+++..+.. .+...++.++.- ....+.+ |-..+...+++.+.+..+... + + .+.
T Consensus 271 ~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~-----~---~k~ 341 (415)
T PF12460_consen 271 ELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-D-----E---IKS 341 (415)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-h-----h---hHH
Confidence 8888888888764322 244555555432 1233555 444455555544444333221 1 1 344
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC-CCCChhhhhhHHHHHH
Q 003608 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMME 685 (808)
Q Consensus 613 ~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~-~~~~p~l~~~~~~l~~ 685 (808)
..+.+++.+++.+. .+++..--+.++|++-..++-++.+....+++.+..++... ..+.+.+..+.|.+++
T Consensus 342 ~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 342 NYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 67889999998875 35555555789999999998888888999999999998755 3335555566665554
No 60
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.37 E-value=0.0036 Score=55.19 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=66.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChh-HH-HHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN-NF-RKALHSV 505 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~-~~-~~~~~~l 505 (808)
.+|..++.++.+++.++....+... .-+..-..+.+.+.++++++.++..++|++++++.......+ .. ..+++.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l 96 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQ--AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL 96 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHH
Confidence 3689999999999999865221100 001100112233345567899999999999999864311112 22 2368889
Q ss_pred HhcCCCCCCchHHhHHHHHHHHH
Q 003608 506 VSGLRDPELPVRVDSVFALRSFV 528 (808)
Q Consensus 506 l~~l~~~~~~V~~~A~~al~~~~ 528 (808)
++.+++.+..++..|+.+|.+++
T Consensus 97 ~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 97 VNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh
Confidence 99998888889999999999886
No 61
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.38 Score=58.03 Aligned_cols=197 Identities=15% Similarity=0.174 Sum_probs=106.5
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q 003608 383 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (808)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~ 462 (808)
.|+.|..|+-=+..+++.-|++. ++.+..+...|-.|.-.| +.+.+.|-..+=+.+-..-++.. -..+...+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl-~p~l~kLIPrLyRY~yDP----~~~Vq~aM~sIW~~Li~D~k~~v--d~y~neIl~ 1042 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKL-EPYLKKLIPRLYRYQYDP----DKKVQDAMTSIWNALITDSKKVV--DEYLNEILD 1042 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhh-hhHHHHhhHHHhhhccCC----cHHHHHHHHHHHHHhccChHHHH--HHHHHHHHH
Confidence 46666666655667766555433 333333333444554443 45566654444443322111110 011222222
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhcc-ccCC-hhHHHHHHHHHHhcCCCCCCchHHhHHHH---HHHHHHhccccccc
Q 003608 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHI-NFSD-QNNFRKALHSVVSGLRDPELPVRVDSVFA---LRSFVEACRDLNEI 537 (808)
Q Consensus 463 ~~v~~~l~~~~~~lr~~a~~~l~~~~~~-~~~~-~~~~~~~~~~ll~~l~~~~~~V~~~A~~a---l~~~~~~~~~~~~l 537 (808)
. +++.+.+..=++|-++|..+...-.- .+.. .+.++++...++..++|-...||.+|-.+ +..+|-...+...-
T Consensus 1043 e-LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1043 E-LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNG 1121 (1702)
T ss_pred H-HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 2 33445556668999999999887432 2111 16688999999999988666788866554 44444221111111
Q ss_pred ccchHHHHHHHHHHh------hhhchh--hHHHHHHHHHHhccccccchHHHHHHHHHH
Q 003608 538 RPILPQLLDEFFKLM------NEVENE--DLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 538 ~p~l~~ll~~l~~ll------~~~~~~--~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
.-..+++..++..+ ++++.- .-..++..++...+..+.||.+.++..|..
T Consensus 1122 -~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1122 -AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN 1179 (1702)
T ss_pred -ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH
Confidence 11233444444332 222211 145667778888899999999999887765
No 62
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.17 Score=56.92 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=96.8
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
.+|..|--|+..+|++.-. .+...+..-+...+++.+|++|..|..++..+.... .+...-..++..+-.
T Consensus 98 ~np~iR~lAlrtm~~l~v~---------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~~~~~~~gl~~~L~~ 167 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVD---------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-PDLVEDSGLVDALKD 167 (734)
T ss_pred CCHHHHHHHhhceeeEeeh---------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-hhhccccchhHHHHH
Confidence 5899999999888876422 111222233444577899999999999998886542 111223455566666
Q ss_pred cCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchHHHHHHHHH
Q 003608 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLA 587 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 587 (808)
.+.|+++.|-..|..|+..+.+... .........+++..++..+++.+.=.-..+++++.....+.-.+ +.++++.+.
T Consensus 168 ll~D~~p~VVAnAlaaL~eI~e~~~-~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e-a~~i~~r~~ 245 (734)
T KOG1061|consen 168 LLSDSNPMVVANALAALSEIHESHP-SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE-AEDICERLT 245 (734)
T ss_pred HhcCCCchHHHHHHHHHHHHHHhCC-CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh-HHHHHHHhh
Confidence 6668888888899999999887742 23455566788888888888765445666677776665433222 444555444
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.16 E-value=0.16 Score=50.75 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=78.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHh---hcccccccCCCcchhhHHHHHHHhhhccccCC-hhHHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV---QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD-QNNFRKALH 503 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~---~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~-~~~~~~~~~ 503 (808)
.+|..|..++.-+..+..+-.. .+....+.+.+. ..+...+++....+...||.+++.++...-.. ..+...+++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~-~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~ 97 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAP-EDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLP 97 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCc-cccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 5899999999988888766411 112223333333 22333455566788899999999887532111 246888999
Q ss_pred HHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHH-HHHHHHHhhhhchh---hHHHHHHHHHHhcc
Q 003608 504 SVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL-LDEFFKLMNEVENE---DLVFTLETIVDKFG 572 (808)
Q Consensus 504 ~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~l-l~~l~~ll~~~~~~---~l~~~l~~iv~~~~ 572 (808)
.++..+.++...++..|..+|..++..+. +.+.+ +..+....++-+.. .....+..++...+
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS-------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS--------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC-------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 99999999888999999999999998762 23344 33333334332222 24555666666666
No 64
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.01 E-value=0.054 Score=50.69 Aligned_cols=125 Identities=15% Similarity=0.195 Sum_probs=93.9
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccc-cCC-hhHHHHHHHHHHhcCCCCC-CchHHhHHHHHHHHHHhcc-----ccc
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSD-QNNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEACR-----DLN 535 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~-~~~-~~~~~~~~~~ll~~l~~~~-~~V~~~A~~al~~~~~~~~-----~~~ 535 (808)
.+...++++++.-|..++.+++...+.. +.- .+....-+..+++.|+.++ +.+...|+.++..++..-. .++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 3556677777888888888777665432 100 1446777888888887654 4588899999999987643 466
Q ss_pred ccccchHHHHHHHHHHhhh-hchhhHHHHHHHHHHhccccccchHHHHHHHHHH
Q 003608 536 EIRPILPQLLDEFFKLMNE-VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 536 ~l~p~l~~ll~~l~~ll~~-~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
...|.++.+++.++++++. ...+..+.++..++..+..-+.||...+-..+..
T Consensus 109 i~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred HhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 7889999999999999984 2345688889999999999999999887766654
No 65
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.97 E-value=1.4 Score=48.28 Aligned_cols=192 Identities=15% Similarity=0.202 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcc
Q 003608 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v 465 (808)
+|..........++++|- +.+++++...-.+ -++|..|.+++.+...++.-+.-. ...++.+++ ..+
T Consensus 297 VRnvt~ra~~vva~algv---~~llpfl~a~c~S-------rkSw~aRhTgiri~qqI~~llG~s--~l~hl~~l~-~ci 363 (975)
T COG5181 297 VRNVTGRAVGVVADALGV---EELLPFLEALCGS-------RKSWEARHTGIRIAQQICELLGRS--RLSHLGPLL-KCI 363 (975)
T ss_pred HHHHHHHHHHHHHHhhCc---HHHHHHHHHHhcC-------ccchhhhchhhHHHHHHHHHhCcc--HHhhhhhHH-HHH
Confidence 344444455666666653 3445555544433 258999999999999999876432 122333433 223
Q ss_pred cccccCCCcchhhHHHHHHHhhhcccc-CChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHH
Q 003608 466 FPEFSSPVGHLRAKAAWVAGQYAHINF-SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544 (808)
Q Consensus 466 ~~~l~~~~~~lr~~a~~~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~l 544 (808)
.-.+.+.+.++|--+...++..++... ---+.+..++.-+-+..+..--.+-.+=..|...++... ++++...+-...
T Consensus 364 ~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm-~peYa~h~tre~ 442 (975)
T COG5181 364 SKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLM-SPEYACHDTREH 442 (975)
T ss_pred HHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccC-ChHhhhhhHHHH
Confidence 334567788999888888888876431 011445555555555543221112223333444444332 467777788899
Q ss_pred HHHHHHHhhhhchhh--HHHHHHHHHHhccccccc--hHHHHHHHHHHHHHH
Q 003608 545 LDEFFKLMNEVENED--LVFTLETIVDKFGEEMAP--YALGLCQNLAAAFWR 592 (808)
Q Consensus 545 l~~l~~ll~~~~~~~--l~~~l~~iv~~~~~~i~p--~~~~l~~~L~~~~~~ 592 (808)
++.++..++..+.+- .+.++..++...+ .++| +..++...+.+.||+
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~-~~tp~~lr~~v~pefF~~fw~ 493 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVG-TDTPWKLRDQVSPEFFSPFWR 493 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccC-CCCHHHHHHhhcHHhhchHHH
Confidence 999999888765442 2333333443332 2444 344455555555554
No 66
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=95.79 E-value=0.27 Score=49.56 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchH---HHHHHHhhcccccccC--CCcchhhHHHHHHHhhhccccCCh--hHHHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKS---ELERMLVQHVFPEFSS--PVGHLRAKAAWVAGQYAHINFSDQ--NNFRKA 501 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~---~l~~~l~~~v~~~l~~--~~~~lr~~a~~~l~~~~~~~~~~~--~~~~~~ 501 (808)
+-..+|-+.+++|.+|..-....+|.- -++++| ..+.+ .|.-+-+.+-|+++..+.-.-.+| ....+.
T Consensus 170 ~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL-----~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqa 244 (526)
T COG5064 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL-----GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQA 244 (526)
T ss_pred hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH-----HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHH
Confidence 457899999999999876443223211 123332 12223 344667889999999976431122 467888
Q ss_pred HHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchH-HHHHHHHHHhhhh
Q 003608 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP-QLLDEFFKLMNEV 555 (808)
Q Consensus 502 ~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~-~ll~~l~~ll~~~ 555 (808)
++.+.+.+...++-|-.-||+|+..+.+.. .+.+...+. .+..+|..++.+.
T Consensus 245 lpiL~KLiys~D~evlvDA~WAiSYlsDg~--~E~i~avld~g~~~RLvElLs~~ 297 (526)
T COG5064 245 LPILAKLIYSRDPEVLVDACWAISYLSDGP--NEKIQAVLDVGIPGRLVELLSHE 297 (526)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhccCc--HHHHHHHHhcCCcHHHHHHhcCc
Confidence 999998887777778899999999988764 344443332 2455566666653
No 67
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=3.5 Score=46.53 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=69.2
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch
Q 003608 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (808)
Q Consensus 462 ~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (808)
.+.+..+|++|+-++|+..+.++ +..+++|.+.++++.+..||...+.=||-.|..|+-.+... .+.+.|-.
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFL-----ckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~---~~~L~pDa 172 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFL-----CKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN---FEHLIPDA 172 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhh-----hhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh---hhhhcCCh
Confidence 44566678889999999999999 44457899999999999999998888999999999998876 57888899
Q ss_pred HHHHHHHHH
Q 003608 542 PQLLDEFFK 550 (808)
Q Consensus 542 ~~ll~~l~~ 550 (808)
|+++...+.
T Consensus 173 peLi~~fL~ 181 (948)
T KOG1058|consen 173 PELIESFLL 181 (948)
T ss_pred HHHHHHHHH
Confidence 999988764
No 68
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.74 E-value=0.38 Score=56.66 Aligned_cols=279 Identities=16% Similarity=0.241 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 385 SPRTASMDFVSELVRKRGK-ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~-~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
.-|..|..+|..++....+ ..+.-+++|+..+++. .....|-+|+..+..+-.-.++.++.. ..++..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~D--------s~a~Vra~Al~Tlt~~L~~Vr~~~~~d---aniF~e 506 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMD--------SEADVRATALETLTELLALVRDIPPSD---ANIFPE 506 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcC--------chHHHHHHHHHHHHHHHhhccCCCccc---chhhHh
Confidence 3567888899998887754 4467788888877764 245677777777766555555543322 244566
Q ss_pred ccccccc----C-CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc-CCCCCCchHHhHHHHHHHHHHhccccccc
Q 003608 464 HVFPEFS----S-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG-LRDPELPVRVDSVFALRSFVEACRDLNEI 537 (808)
Q Consensus 464 ~v~~~l~----~-~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~V~~~A~~al~~~~~~~~~~~~l 537 (808)
+++|.|+ + ...++|....-++++++....+ ++......-... +++++.- . . .....
T Consensus 507 YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r---Fle~~q~~~~~g~~n~~nse---t----------~--~~~~~ 568 (1431)
T KOG1240|consen 507 YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR---FLELTQELRQAGMLNDPNSE---T----------A--PEQNY 568 (1431)
T ss_pred hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---HHHHHHHHHhcccccCcccc---c----------c--ccccc
Confidence 6777765 3 4568898888899998864311 111111111111 2333211 0 0 01111
Q ss_pred ccchHHHHHHHH----HHhhhhch---hhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHH
Q 003608 538 RPILPQLLDEFF----KLMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALA 610 (808)
Q Consensus 538 ~p~l~~ll~~l~----~ll~~~~~---~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~ 610 (808)
..++..+.+..- .++...+. ..++..|.-++..||.+=.. +-|..+|+. |++ |. | +.+
T Consensus 569 ~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN--D~iLshLiT-fLN-------Dk----D-w~L 633 (1431)
T KOG1240|consen 569 NTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN--DVILSHLIT-FLN-------DK----D-WRL 633 (1431)
T ss_pred chHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc--cchHHHHHH-Hhc-------Cc----c-HHH
Confidence 112222222211 22222111 12444444455556543111 124456663 333 22 1 457
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCC-----------CC-----Ch
Q 003608 611 AVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSP-----------TI-----SL 674 (808)
Q Consensus 611 ~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~-----------~~-----~p 674 (808)
++..++.|..+.--++.. +.+++++|++...+....+..+..++..++.+++..- .+ -|
T Consensus 634 R~aFfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 634 RGAFFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHHHHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc
Confidence 788899988776555542 3568999999999987777788999999999987541 11 22
Q ss_pred hhh---hhHHHHHHHhhhh-HHhhhhhhhhhhhhhhccCccc
Q 003608 675 EMW---SLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAH 712 (808)
Q Consensus 675 ~l~---~~~~~l~~~~~~~-~~~~~~~~~~~L~~~i~~~~~~ 712 (808)
..| ..+..|+....++ ..|.--.+++++..|+..+..+
T Consensus 709 N~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~ 750 (1431)
T KOG1240|consen 709 NLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQ 750 (1431)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhh
Confidence 233 1222223222221 3444445677788887766544
No 69
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.73 E-value=0.0073 Score=44.71 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhh
Q 003608 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQY 487 (808)
Q Consensus 430 ~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~ 487 (808)
|..|++++.++|.++....+. ....+... ...+.+.|+++++-+|..|+|++|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~~~~~~-~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQPYLPEL-LPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHHHHHHH-HHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 789999999999877654432 11122232 23345667788889999999999863
No 70
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.68 E-value=0.22 Score=49.72 Aligned_cols=166 Identities=14% Similarity=0.197 Sum_probs=96.7
Q ss_pred ccCCHHHHHHHHHHHHHHhc-ccchHHHHHHHHH---HHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHH
Q 003608 382 DLYSPRTASMDFVSELVRKR-GKENLQKFIQFIV---GIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSEL 457 (808)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~-~~~~~~~il~~i~---~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l 457 (808)
+.|+.|..|..-|..++... +....+.+.+.+. ..+..... +.+-..--.++.+++.++..+... +...+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~----d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~~ 92 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS----DLRSKVSKTACQLLSDLARQLGSH--FEPYA 92 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-----HH---HHHHHHHHHHHHHHHHGGG--GHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhHh--HHHHH
Confidence 35888999999999998766 2333333444333 22222111 123455666777888888887663 33333
Q ss_pred HHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHH-HHHHHhcCCCCCCchHHhHHHHHHHHHHhcc-ccc
Q 003608 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA-LHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLN 535 (808)
Q Consensus 458 ~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~-~~~ 535 (808)
+.++ +.++..+.++..++|.+|.-++..+.+.. + +...+ ...+...+++.++.||..++..+..++.... ...
T Consensus 93 ~~~l-~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~--~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 93 DILL-PPLLKKLGDSKKFIREAANNALDAIIESC--S--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHH-HHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHH-HHHHHHHccccHHHHHHHHHHHHHHHHHC--C--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 3332 33444556778899999999998887643 1 22444 6777777888899999999999999998874 235
Q ss_pred cccc--chHHHHHHHHHHhhhhchh
Q 003608 536 EIRP--ILPQLLDEFFKLMNEVENE 558 (808)
Q Consensus 536 ~l~p--~l~~ll~~l~~ll~~~~~~ 558 (808)
.+.. .++.+.+.+..++++.+.+
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~ 192 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPE 192 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHH
Confidence 5544 3578888888888876554
No 71
>PRK09687 putative lyase; Provisional
Probab=95.50 E-value=0.089 Score=54.00 Aligned_cols=115 Identities=14% Similarity=0.166 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
+.+|.+|...|..+...-.. -.+...+.+...+.. .+|..|.++..++|.+... .-++.
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~~D--------~~~~VR~~a~~aLg~~~~~--------~ai~~---- 163 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPL-YSPKIVEQSQITAFD--------KSTNVRFAVAFALSVINDE--------AAIPL---- 163 (280)
T ss_pred HHHHHHHHHHHhcccccccc-cchHHHHHHHHHhhC--------CCHHHHHHHHHHHhccCCH--------HHHHH----
Confidence 45777777777666432111 112223322233322 4899999999999865421 11222
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHH
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~ 527 (808)
+++.+.++++.+|..|.+.+|++.. .+ +.+.+.++..+.|++..||..|+.+|..+
T Consensus 164 -L~~~L~d~~~~VR~~A~~aLg~~~~---~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 164 -LINLLKDPNGDVRNWAAFALNSNKY---DN----PDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred -HHHHhcCCCHHHHHHHHHHHhcCCC---CC----HHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3335667888999999999999732 12 35677788888999999999999999874
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=6.3 Score=45.00 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=79.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
.+...|.-+|.+...+=+ +.. ++--++.+.+..+|++++.++.+-|+..+|+.+ ++|..+.+.+-+-.
T Consensus 82 ~~f~dKRiGYLaamLlLd---E~q----dvllLltNslknDL~s~nq~vVglAL~alg~i~-----s~EmardlapeVe~ 149 (866)
T KOG1062|consen 82 DNFLDKRIGYLAAMLLLD---ERQ----DLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC-----SPEMARDLAPEVER 149 (866)
T ss_pred CCchHHHHHHHHHHHHhc---cch----HHHHHHHHHHHhhccCCCeeehHHHHHHhhccC-----CHHHhHHhhHHHHH
Confidence 478888888877765433 222 344556777788999999999999999998865 45778888888888
Q ss_pred cCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHH
Q 003608 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLD 546 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~ 546 (808)
.|+.+++-||-.|+.|..+|+... ++...-|++..-+
T Consensus 150 Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~~~~~~ 186 (866)
T KOG1062|consen 150 LLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFVIAFRK 186 (866)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhhHHHHH
Confidence 888888899999999999999874 4554444444433
No 73
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=3.8 Score=46.59 Aligned_cols=234 Identities=18% Similarity=0.214 Sum_probs=127.9
Q ss_pred HHHHHhhcccccccCC-CcchhhHHHHHHHhhh-ccccCCh---hHHHHHHHHHHhcCCC-CCCchHHhHHHHHHHHHHh
Q 003608 457 LERMLVQHVFPEFSSP-VGHLRAKAAWVAGQYA-HINFSDQ---NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 457 l~~~l~~~v~~~l~~~-~~~lr~~a~~~l~~~~-~~~~~~~---~~~~~~~~~ll~~l~~-~~~~V~~~A~~al~~~~~~ 530 (808)
..+.+-......+++. +..+|-.+..++--.. +|.|+.+ .+++.++..+.+.+.. +..--|.+-...+..++..
T Consensus 523 ~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r 602 (978)
T KOG1993|consen 523 LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIER 602 (978)
T ss_pred HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3344434445566665 5566666666554433 3566554 4566777777776653 1222466777888888877
Q ss_pred cccccccccchHHHHHHHHHHhhhhchhh-----HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHHHhcccCCCC
Q 003608 531 CRDLNEIRPILPQLLDEFFKLMNEVENED-----LVFTLETIVDKFGEE---MAPYALGLCQNLAAAFWRCMNTAEADED 602 (808)
Q Consensus 531 ~~~~~~l~p~l~~ll~~l~~ll~~~~~~~-----l~~~l~~iv~~~~~~---i~p~~~~l~~~L~~~~~~~~~~~~~d~~ 602 (808)
. .+.+.||...+++-+-.+=.+.+.+. +..+|..+|...|.. +-|++..+++.-+ |++
T Consensus 603 ~--~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~------------D~~ 668 (978)
T KOG1993|consen 603 V--SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST------------DPS 668 (978)
T ss_pred H--HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc------------CCC
Confidence 4 78888999998887666666655554 567788888888754 4444444333211 221
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCC--ChhhhhhH
Q 003608 603 ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTI--SLEMWSLW 680 (808)
Q Consensus 603 ~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~--~p~l~~~~ 680 (808)
. ++...+..--.+.-.+.+.....-++-+..+.+.+.|.|+.. .+-...+++++.+.+--..+. ......+|
T Consensus 669 s-P~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~s-----te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~ 742 (978)
T KOG1993|consen 669 S-PEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQS-----TENLPTVLMIISSYILLDNTVFLNDYAFGIF 742 (978)
T ss_pred C-CceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 1 111111111123333333333332333333445555555544 344566777776654322111 22223455
Q ss_pred HHHHHHhhhhHHhhhhhhhhhhhhhhccCc
Q 003608 681 PLMMEALADWAIDFFPNILVPLDNYISRGT 710 (808)
Q Consensus 681 ~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~ 710 (808)
..+.+.+++-..+-++.++++++..+...|
T Consensus 743 k~~~~~l~dvr~egl~avLkiveili~t~~ 772 (978)
T KOG1993|consen 743 KKLNDLLDDVRNEGLQAVLKIVEILIKTNP 772 (978)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhH
Confidence 555666655566677778888777766554
No 74
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.38 E-value=0.014 Score=37.13 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 501 ALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 501 ~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
+++.+++.++|++..||.+|+.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999875
No 75
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=9.1 Score=45.81 Aligned_cols=284 Identities=11% Similarity=0.099 Sum_probs=170.7
Q ss_pred cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC-CCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003608 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (808)
Q Consensus 474 ~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l-~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll 552 (808)
++.+.+-+-.+-..+.+. ++.....++ -+.... +..+..||..|-.-|..++...........++..+.+.+..-+
T Consensus 630 ~~~~~slLdl~~~~a~~~--~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~ 706 (1176)
T KOG1248|consen 630 SFKTLSLLDLLIALAPVQ--TESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSF 706 (1176)
T ss_pred hHHHHHHHHHHHhhhccc--cchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 456666666655555432 333445555 333333 3346679999999999988763333445567777777777777
Q ss_pred hhhchhh---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhh--cC
Q 003608 553 NEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESV--SR 627 (808)
Q Consensus 553 ~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~--~~ 627 (808)
+....-. -..++..+++-.+.+..-+.+..+ ...++.. + ..|. .....+..++-.|+.+-.+. +.
T Consensus 707 qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I---~EvIL~~-K--e~n~----~aR~~Af~lL~~i~~i~~~~d~g~ 776 (1176)
T KOG1248|consen 707 QSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI---PEVILSL-K--EVNV----KARRNAFALLVFIGAIQSSLDDGN 776 (1176)
T ss_pred hccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH---HHHHHhc-c--cccH----HHHhhHHHHHHHHHHHHhhhcccc
Confidence 7655433 567777777777633332222222 2222222 1 1111 12233445555555433333 33
Q ss_pred ChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhh-cCCCC-ChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhh
Q 003608 628 LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF-FSPTI-SLEMWSLWPLMMEALADWAIDFFPNILVPLDNY 705 (808)
Q Consensus 628 ~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~-~~~~~-~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~ 705 (808)
+| . ....+-++++|...+-.+........+--++.+++ ...-+ ++.+.+++..+.-.+.+...+.....+..+..+
T Consensus 777 e~-~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvl 854 (1176)
T KOG1248|consen 777 EP-A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVL 854 (1176)
T ss_pred cc-h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44 1 12235566777766666665554442333344444 33333 455677888888778776777888899999999
Q ss_pred hccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC-cccchHHHHHHHHHHHhh
Q 003608 706 ISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRR 778 (808)
Q Consensus 706 i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~-~~~~l~~il~~~~~~l~~ 778 (808)
++.-|+..+. ++.+.++.-+.++..+.+ ...+..+..|++.+++.++.+ +.+++|.-...+++++..
T Consensus 855 v~~~pe~~l~----~~~~~LL~sll~ls~d~k--~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK 922 (1176)
T KOG1248|consen 855 VYKFPEECLS----PHLEELLPSLLALSHDHK--IKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRK 922 (1176)
T ss_pred HHcCCHHHHh----hhHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHH
Confidence 9999999886 566666666666554322 222456789999999999976 788999877777777754
No 76
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=2.5 Score=47.57 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=80.2
Q ss_pred CHHHHHHHhcccccccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHh
Q 003608 368 DPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL 447 (808)
Q Consensus 368 Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l 447 (808)
-|+||+|. .+ +.-+|+-...+.++++++.+.++|... +.-.|.-|+++++.+....
T Consensus 110 HPNEyiRG--------~T--------LRFLckLkE~ELlepl~p~IracleHr--------hsYVRrNAilaifsIyk~~ 165 (948)
T KOG1058|consen 110 HPNEYIRG--------ST--------LRFLCKLKEPELLEPLMPSIRACLEHR--------HSYVRRNAILAIFSIYKNF 165 (948)
T ss_pred CchHhhcc--------hh--------hhhhhhcCcHHHhhhhHHHHHHHHhCc--------chhhhhhhheeehhHHhhh
Confidence 69999873 22 445666666688899999999888652 3345555555666665442
Q ss_pred hc-CCcchHHHHHHHhhcccccccCC---Cc------chhhHHHHHHHhh-hcc------------------ccCChhHH
Q 003608 448 KQ-TEPYKSELERMLVQHVFPEFSSP---VG------HLRAKAAWVAGQY-AHI------------------NFSDQNNF 498 (808)
Q Consensus 448 ~~-~~~~~~~l~~~l~~~v~~~l~~~---~~------~lr~~a~~~l~~~-~~~------------------~~~~~~~~ 498 (808)
.. .++ .+.++..++..+..+. +. .=+.||+..++.- ..+ ...++..-
T Consensus 166 ~~L~pD----apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 166 EHLIPD----APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred hhhcCC----hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 11 112 2233333322222110 11 1123443333221 111 01233445
Q ss_pred HHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHH
Q 003608 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLD 546 (808)
Q Consensus 499 ~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~ 546 (808)
...++.+.+.|++++..|+..|+.+|.++..+ +..+++-...+++
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~ 286 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYID 286 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHH
Confidence 56677777788877888999998888887655 4555544444444
No 77
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=8.1 Score=44.62 Aligned_cols=217 Identities=14% Similarity=0.193 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCC-----CCCCchHHhHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhcc
Q 003608 499 RKALHSVVSGLR-----DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG 572 (808)
Q Consensus 499 ~~~~~~ll~~l~-----~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~ 572 (808)
...++.+++..- ..++..-.++...+..+++-.. .+..+-|+++-+++.|- +.-.+......+..+.+.+.
T Consensus 503 ~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh---~sk~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 503 STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH---NSKESEQAISTLKTLCETCP 579 (982)
T ss_pred hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc---CchHHHHHHHHHHHHHHhhh
Confidence 344555555542 1233344456666666654322 46667777777766653 22223346667999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhc--CChHHHHHHHhhHHHHHHHHcccC
Q 003608 573 EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVS--RLPHLFVQIEPTLLPIMRRMLTTD 650 (808)
Q Consensus 573 ~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~--~~~~~~~~~~~~~~p~i~~~l~~~ 650 (808)
+++.||+..++..+-..+.+ ... +...+..+..+++-++..++ +.+.-..++..-++.-++.++.++
T Consensus 580 ~~L~py~d~~~a~~~e~l~~----~~~-------~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~ 648 (982)
T KOG2022|consen 580 ESLDPYADQFSAVCYEVLNK----SNA-------KDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPG 648 (982)
T ss_pred hhCchHHHHHHHHHHHHhcc----ccc-------CchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998776652222 111 11234467788888877765 222223333344444455555543
Q ss_pred hh---hHHHHHHHH------HHHhhhcCCCC---------Ch--------hhhhhHHHHHHHhhhh--HHhhhhhhhhhh
Q 003608 651 GQ---EVFEEVLEI------VSYMTFFSPTI---------SL--------EMWSLWPLMMEALADW--AIDFFPNILVPL 702 (808)
Q Consensus 651 ~~---~~~e~~l~l------l~~~~~~~~~~---------~p--------~l~~~~~~l~~~~~~~--~~~~~~~~~~~L 702 (808)
.. .-...++++ .++++...+.+ +| .+.+++|.+-++...| ..++++..+.+.
T Consensus 649 i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~ 728 (982)
T KOG2022|consen 649 IDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIM 728 (982)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 32 112223322 22222211100 11 1224444444443222 344555555554
Q ss_pred hhhhccCcccccccCCchHHHHHHHHHHHHh
Q 003608 703 DNYISRGTAHFLTCKEPDYQQSLWSMVSSIM 733 (808)
Q Consensus 703 ~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l 733 (808)
..-+.-..+.|.+ .++..++.++.+..
T Consensus 729 ~~~v~~~~~sF~~----p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 729 VKGVRSLLTSFPE----PMLPSLCPFIVRFL 755 (982)
T ss_pred Hhccccccccchh----hhHHHHHHHHHHhc
Confidence 4434433333543 67888888887744
No 78
>PRK09687 putative lyase; Provisional
Probab=95.03 E-value=0.17 Score=51.90 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
...|..|...|..+-.... .....++.+...+.+ .++|..|.++..++|.++..-.. ... ..+ .
T Consensus 68 ~~vR~~A~~aLg~lg~~~~--~~~~a~~~L~~l~~~-------D~d~~VR~~A~~aLG~~~~~~~~---~~~---~a~-~ 131 (280)
T PRK09687 68 PIERDIGADILSQLGMAKR--CQDNVFNILNNLALE-------DKSACVRASAINATGHRCKKNPL---YSP---KIV-E 131 (280)
T ss_pred HHHHHHHHHHHHhcCCCcc--chHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhcccccccc---cch---HHH-H
Confidence 3467778777777643211 012233444444322 25789999999999987532111 111 111 1
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
.+.+.+.++++.+|..+.+.+|++.. ...++.++..+.|++.-||..|+.||..+-.. -+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~~~---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~----------~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVIND---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD----------NPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhccCC---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC----------CHH
Confidence 12234557789999999999987542 34678888999998889999999999987211 224
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHH
Q 003608 544 LLDEFFKLMNEVENEDLVFTLETIVD 569 (808)
Q Consensus 544 ll~~l~~ll~~~~~~~l~~~l~~iv~ 569 (808)
+.+.|..+++..+.+.-..++..+..
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 55556666665444444455555544
No 79
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.74 E-value=0.074 Score=43.75 Aligned_cols=76 Identities=24% Similarity=0.233 Sum_probs=54.5
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
++|..|..++.++|.+... ...+.|.. .++++++.+|..|++.+|++++ ...++.+..
T Consensus 12 ~~~~vr~~a~~~L~~~~~~---------~~~~~L~~----~l~d~~~~vr~~a~~aL~~i~~---------~~~~~~L~~ 69 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDP---------EAIPALIE----LLKDEDPMVRRAAARALGRIGD---------PEAIPALIK 69 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHH---------HHHHHHHH----HHTSSSHHHHHHHHHHHHCCHH---------HHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCH---------hHHHHHHH----HHcCCCHHHHHHHHHHHHHhCC---------HHHHHHHHH
Confidence 5899999999999943221 22333333 4468899999999999998753 445667777
Q ss_pred cCCC-CCCchHHhHHHHHH
Q 003608 508 GLRD-PELPVRVDSVFALR 525 (808)
Q Consensus 508 ~l~~-~~~~V~~~A~~al~ 525 (808)
.+.+ ++..||..|+.||.
T Consensus 70 ~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhcC
Confidence 7765 45668999998874
No 80
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.44 E-value=13 Score=43.25 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=99.2
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~ 508 (808)
|...|.-+++=+-..+.. .| +..-+..+.+..+++++++.+|+.|+.++|... .++....+++.+.++
T Consensus 68 d~ElKrL~ylYl~~yak~----~P---~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~-----~~el~~~~~~~ik~~ 135 (757)
T COG5096 68 DVELKRLLYLYLERYAKL----KP---ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR-----VKELLGNIIDPIKKL 135 (757)
T ss_pred CHHHHHHHHHHHHHHhcc----CH---HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHH
Confidence 566666666555544432 12 233334456777899999999999999997643 457899999999999
Q ss_pred CCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchHHHHHHHHHH
Q 003608 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
++|++.-||-.|+.|+..+.+.. ++.+..- ..+..+-.++.+.+..-+..++-++.....+...+|....+..+.+
T Consensus 136 l~d~~ayVRk~Aalav~kly~ld--~~l~~~~--g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~ 211 (757)
T COG5096 136 LTDPHAYVRKTAALAVAKLYRLD--KDLYHEL--GLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQ 211 (757)
T ss_pred ccCCcHHHHHHHHHHHHHHHhcC--Hhhhhcc--cHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhh
Confidence 99999999999999999998764 2332221 1233333445555555577778777777666677787777766554
No 81
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.34 E-value=6.3 Score=41.37 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHHh----hhhchhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHH
Q 003608 539 PILPQLLDEFFKLM----NEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGC 614 (808)
Q Consensus 539 p~l~~ll~~l~~ll----~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 614 (808)
.++|++++.++.-. ..+...++..++.+++.++++.+.|+.+.+...+..+-...+.+... +.+-.+...
T Consensus 67 ~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~------~yPe~r~~f 140 (319)
T PF08767_consen 67 NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFE------EYPEHRVNF 140 (319)
T ss_dssp HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSS------SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh------hChHHHHHH
Confidence 34555555444333 33444568999999999999999999999999988877776653221 233345567
Q ss_pred HHHHHHHHHhhcCChHHHHHH----HhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC
Q 003608 615 LRAISTILESVSRLPHLFVQI----EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS 669 (808)
Q Consensus 615 l~~i~~li~~~~~~~~~~~~~----~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~ 669 (808)
+..+..+++..- +.+.++ ...++..+...+.+...+..+.++.++..++.+.
T Consensus 141 f~LL~~i~~~~f---~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~ 196 (319)
T PF08767_consen 141 FKLLRAINEHCF---PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNV 196 (319)
T ss_dssp HHHHHHHHHHHT---HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhH---HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 777777776542 222222 1344555566666777899999999999888754
No 82
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.85 E-value=0.045 Score=48.01 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=58.2
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCC-hhHHH-HHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch-HHHH
Q 003608 469 FSSPVGHLRAKAAWVAGQYAHINFSD-QNNFR-KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL-PQLL 545 (808)
Q Consensus 469 l~~~~~~lr~~a~~~l~~~~~~~~~~-~~~~~-~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l-~~ll 545 (808)
+.++++.+|..++++++.++...... ..... .+++.+++.|++++..|+..|+.+|.+++.... .....+. ..++
T Consensus 16 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~l 93 (120)
T cd00020 16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE--DNKLIVLEAGGV 93 (120)
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--HHHHHHHHCCCh
Confidence 44567899999999999988642001 12333 788899999998888999999999999987642 1111111 2356
Q ss_pred HHHHHHhhhh
Q 003608 546 DEFFKLMNEV 555 (808)
Q Consensus 546 ~~l~~ll~~~ 555 (808)
..+.++++..
T Consensus 94 ~~l~~~l~~~ 103 (120)
T cd00020 94 PKLVNLLDSS 103 (120)
T ss_pred HHHHHHHhcC
Confidence 6666666654
No 83
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.84 E-value=0.59 Score=46.98 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=102.0
Q ss_pred CCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHH
Q 003608 471 SPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (808)
Q Consensus 471 ~~~~~lr~~a~~~l~~~~~~~~~~~~~--~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l 548 (808)
+.+|+++.+|+..+|..+.+.+ +++. -...++.+.+.|.++++.||..|..|+.++....+....++.|++.+++..
T Consensus 24 t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~ 102 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET 102 (254)
T ss_pred CCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 4689999999999999876543 2322 345788888999999999999999999999766555667778888877765
Q ss_pred HHHhhhhchhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC
Q 003608 549 FKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL 628 (808)
Q Consensus 549 ~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~ 628 (808)
... ..+++.=...+..+..- . +++....++...+..+.+++..+. . .....++.++. .+.++
T Consensus 103 ~s~--~lns~~Q~agLrlL~nL-t--v~~~~~~~l~~~i~~ll~LL~~G~--~-------~~k~~vLk~L~----nLS~n 164 (254)
T PF04826_consen 103 VSS--PLNSEVQLAGLRLLTNL-T--VTNDYHHMLANYIPDLLSLLSSGS--E-------KTKVQVLKVLV----NLSEN 164 (254)
T ss_pred hcC--CCCCHHHHHHHHHHHcc-C--CCcchhhhHHhhHHHHHHHHHcCC--h-------HHHHHHHHHHH----HhccC
Confidence 442 11121112222222211 0 112111222222223445665422 1 12333444443 34455
Q ss_pred hHHHHHH-HhhHHHHHHHHcccC-hhhHHHHHHHHHHHhhhc
Q 003608 629 PHLFVQI-EPTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFF 668 (808)
Q Consensus 629 ~~~~~~~-~~~~~p~i~~~l~~~-~~~~~e~~l~ll~~~~~~ 668 (808)
|.....+ ...+.+-+...++.+ ..+.+-.++.+..++.++
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 6543322 233445555566543 456777777777766543
No 84
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=15 Score=41.95 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
++.+.-|..-|..+.-+ |+. ++.+++.+.....+ +|...|.-++.-+-.-|+. ..+.. +-+ .+
T Consensus 49 d~~KleAmKRIia~iA~-G~d-vS~~Fp~VVKNVas--------kn~EVKkLVyvYLlrYAEe---qpdLA--LLS--In 111 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAK-GKD-VSLLFPAVVKNVAS--------KNIEVKKLVYVYLLRYAEE---QPDLA--LLS--IN 111 (968)
T ss_pred cHHHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHhhc--------cCHHHHHHHHHHHHHHhhc---CCCce--eee--HH
Confidence 34444455555554433 333 34455543333322 3556666655544444443 22210 000 12
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
.+...|.++++.+|+.|+.+++-.. -+-..+-++-++-++..|+.+-||-.||.||..+-+.. ..-.+ +
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIR-----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd---~e~k~---q 180 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIR-----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD---PEQKD---Q 180 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcc-----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC---hhhHH---H
Confidence 2333577899999999999986543 22234556666667788999999999999999987653 22222 4
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHHhcccc---ccchHHHHHHHHH
Q 003608 544 LLDEFFKLMNEVENEDLVFTLETIVDKFGEE---MAPYALGLCQNLA 587 (808)
Q Consensus 544 ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~---i~p~~~~l~~~L~ 587 (808)
+++.+-.++..-+.-.+-.++.++-+.+.++ |-++...+|+.|.
T Consensus 181 L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~ 227 (968)
T KOG1060|consen 181 LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLP 227 (968)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhcc
Confidence 4554445555543332333333333333332 4456666666554
No 85
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=16 Score=41.94 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=97.2
Q ss_pred HHHHhcC---CCHHHHHHHHHHHHH--hhcCCC-hH-HHHHHHHHhcCc-ChhhHHHHH-----------HHHHHHHhhc
Q 003608 9 ILQGALS---PNPEERKAAEHSLNQ--FQYTPQ-HL-VRLLQIIVDNNC-DLSVRQVAS-----------IHFKNFIAKN 69 (808)
Q Consensus 9 ~l~~~ls---~d~~~r~~Ae~~L~~--~~~~p~-f~-~~L~~i~~~~~~-~~~vR~~A~-----------i~lKn~i~~~ 69 (808)
.+.+++. .|+.-|++.-+.|-- +-..|. |. ..++.++.++.. +-.+-.+|+ +++-|.+++.
T Consensus 36 ~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknD 115 (866)
T KOG1062|consen 36 AIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKND 115 (866)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Confidence 4555554 345566666666653 335553 54 356677776553 333444444 4567888888
Q ss_pred cCCCCCC--------cCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh--h
Q 003608 70 WAPHEPN--------EQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--Q 139 (808)
Q Consensus 70 W~~~~~~--------~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~ 139 (808)
-+.+... .....++|--.-+--.+-+.+...++.||++.+.|..++.+.. |+.-..+++.-.+++.+. .
T Consensus 116 L~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hG 194 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHG 194 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCc
Confidence 7765421 1123444432222233334567899999999999999999875 555555555555566554 3
Q ss_pred -HHHHHHHHHHHHHHcccCCcCCcchHHHHHHHHhHHHHHHHH
Q 003608 140 -VYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFN 181 (808)
Q Consensus 140 -~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~ 181 (808)
..+++..+.++|+.- .+.-..++.+.+.++-.|.++..
T Consensus 195 VL~~~l~l~~e~c~~~----~~~l~~fr~l~~~lV~iLk~l~~ 233 (866)
T KOG1062|consen 195 VLIAGLHLITELCKIS----PDALSYFRDLVPSLVKILKQLTN 233 (866)
T ss_pred eeeeHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777888888752 33333455555555444444433
No 86
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=15 Score=41.68 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=84.4
Q ss_pred HHHHHHHHhhcC-----ChHHHHHHHhhHHHHHHHHcccChh------hHHHHHHHHHH---HhhhcCCCCChhh----h
Q 003608 616 RAISTILESVSR-----LPHLFVQIEPTLLPIMRRMLTTDGQ------EVFEEVLEIVS---YMTFFSPTISLEM----W 677 (808)
Q Consensus 616 ~~i~~li~~~~~-----~~~~~~~~~~~~~p~i~~~l~~~~~------~~~e~~l~ll~---~~~~~~~~~~p~l----~ 677 (808)
.++..++....+ .++...++.+.++.+....+++... |--=-+..+++ +++-+....+.-+ .
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~ 640 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV 640 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 344445554432 3566677777777777777765311 11112233333 3332222322222 2
Q ss_pred hhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHc
Q 003608 678 SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 757 (808)
Q Consensus 678 ~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~ 757 (808)
.++|.+-=++.+.-.|+-+++++++++|.....+. - +.+..+++++.+++.++..-++ ...+...+..++.+-
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI-~-----pimwgi~Ell~~~l~~~~t~~y-~ee~~~al~nfityG 713 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFMSKEI-E-----PIMWGIFELLLNLLIDEITAVY-SEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHh-h-----hhhhHHHHHHHhcccccchhhh-HHHHHHHHHHHHHhC
Confidence 45555544455667889999999999986654432 1 5677888888888754321121 234667778888876
Q ss_pred CcCc--cc-chHHHHHHHHHHHhh
Q 003608 758 KGQV--DH-WVEPYLRITVERLRR 778 (808)
Q Consensus 758 ~~~~--~~-~l~~il~~~~~~l~~ 778 (808)
+.++ ++ |...+.......+.+
T Consensus 714 ~~ef~~~~~y~~i~~eI~~~~l~s 737 (970)
T COG5656 714 KTEFMDAGIYGSICSEISKLCLCS 737 (970)
T ss_pred ccccccccchhHHHHHHHHHHHcc
Confidence 5553 23 333333344444444
No 87
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.59 E-value=7.7 Score=40.49 Aligned_cols=206 Identities=14% Similarity=0.127 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003608 316 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (808)
Q Consensus 316 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~ 395 (808)
.+.+..+|+-+..++........+..+...++..+. ..+.=.. + .-+..|..++.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~-k~lkkg~---------~---------------~E~~lA~~~l~ 111 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALL-KSLKKGK---------S---------------EEQALAARALA 111 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHhccCC---------H---------------HHHHHHHHHHH
Confidence 456667777776666555555555555555555433 2221000 0 01234555566
Q ss_pred HHHHhcc-----cchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcC-Ccch---HHHHHHHhhccc
Q 003608 396 ELVRKRG-----KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT-EPYK---SELERMLVQHVF 466 (808)
Q Consensus 396 ~l~~~~~-----~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~-~~~~---~~l~~~l~~~v~ 466 (808)
-++-..| .+++..+.+.+.+.+... ....+.|-+++.++|.++...... .... ..++.++.. ..
T Consensus 112 Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~------s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~-~~ 184 (309)
T PF05004_consen 112 LLALTLGAGEDSEEIFEELKPVLKRILTDS------SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLL-SI 184 (309)
T ss_pred HHhhhcCCCccHHHHHHHHHHHHHHHHhCC------ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-Hh
Confidence 6655544 244555556565665542 135677889999999887654332 1222 223322221 11
Q ss_pred cccc--------CCCcchhhHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc--cc
Q 003608 467 PEFS--------SPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR--DL 534 (808)
Q Consensus 467 ~~l~--------~~~~~lr~~a~~~l~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~--~~ 534 (808)
+... .+.+-+...|+-.-|-........ .......++.+...|.+++.-||++|..+|.-+.+... ..
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~ 264 (309)
T PF05004_consen 185 LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEE 264 (309)
T ss_pred cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 1111 123456666654444444322110 14567788999999998899999999999998887643 11
Q ss_pred cccccchHHHHHHHHHHhh
Q 003608 535 NEIRPILPQLLDEFFKLMN 553 (808)
Q Consensus 535 ~~l~p~l~~ll~~l~~ll~ 553 (808)
+...+..+.+++.+-.+..
T Consensus 265 ~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 265 DFLYEDMEELLEQLRELAT 283 (309)
T ss_pred cccccCHHHHHHHHHHHHH
Confidence 2223444444444444443
No 88
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.46 E-value=17 Score=41.30 Aligned_cols=489 Identities=14% Similarity=0.155 Sum_probs=239.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC---hHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCC-------
Q 003608 6 LALILQGALSPNPEERKAAEHSLNQFQYTPQ---HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP------- 75 (808)
Q Consensus 6 l~~~l~~~ls~d~~~r~~Ae~~L~~~~~~p~---f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~------- 75 (808)
+...|-..-++.+..|+.|-.+|..=...-| .+..++-++.+.+.+.+-|.+-.=.+-+.+-+--.-...
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILv 444 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV 444 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEE
Confidence 4455556667788899999888875443322 223334456677777788876655544444332211100
Q ss_pred -CcCCCCChhHHHH-----HHHHHHH---------HHh----cCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhc
Q 003608 76 -NEQQKISQVDKDM-----VRDHILV---------FVA----QVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQ 136 (808)
Q Consensus 76 -~~~~~l~~e~k~~-----ir~~ll~---------~l~----~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~ 136 (808)
-.+..+.++-+.. |-.+|.. .+. +.+.-||+..+.+++.+|..- .-|.|++.+-...+
T Consensus 445 Viepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gip~llpfLkavc~ 521 (1172)
T KOG0213|consen 445 VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GIPALLPFLKAVCG 521 (1172)
T ss_pred EeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHHhc
Confidence 0123344443322 2222322 111 246789999999999999875 57899999999887
Q ss_pred hh----hHHHHHHHHHHHHHHcccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcC
Q 003608 137 DQ----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI 212 (808)
Q Consensus 137 s~----~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~ 212 (808)
|. ..|.+..+..+|+.-.. . .+++ ++..+..+..+.+.... +..-.+..+++..+... .-
T Consensus 522 SkkSwqaRhTgIkivqqIail~G----c------svlp-hl~~lv~ii~~gl~De~--qkVR~itAlalsalaea---a~ 585 (1172)
T KOG0213|consen 522 SKKSWQARHTGIKIVQQIAILSG----C------SVLP-HLKPLVKIIEHGLKDEQ--QKVRTITALALSALAEA---AT 585 (1172)
T ss_pred cccchhhhchhhHHHHHHHHHhc----c------hhhh-hhHHHHHHHHHhhcccc--hhhhhHHHHHHHHHHHh---cC
Confidence 76 35888888888875321 1 1222 33455566666654321 11111222222222211 11
Q ss_pred CcccCChhhHHHHHH---------------HHHHHhcCCCCCCCCCCChhhhhhccchHHHHHHHHHHHHHHHHhCCCCC
Q 003608 213 PKQLLDPNVFNAWMI---------------LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKL 277 (808)
Q Consensus 213 p~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~ 277 (808)
|-. .+.|...+. .|++.+...+| -.|++.. .-..-+++..+...|++|.
T Consensus 586 Pyg---ie~fDsVlkpLwkgir~hrgk~laafLkAigylip----lmd~eya--------~yyTrevmlil~rEf~sPD- 649 (1172)
T KOG0213|consen 586 PYG---IEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIP----LMDAEYA--------SYYTREVMLILIREFGSPD- 649 (1172)
T ss_pred Ccc---hHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccc----cccHHHH--------HHhHHHHHHHHHHhhCCCh-
Confidence 211 123333322 33333333332 1122110 0011122333444455542
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHHHHHhhh--CCcccCHHHHHH-HHHHHHhhcCCchhhhhchhhHHHHHHHHHhhc
Q 003608 278 QNPENRAFAQMFQKNYAGKILECHLNLLNRIR--VGGYLPDRVTNL-ILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPL 354 (808)
Q Consensus 278 ~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~-~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~ 354 (808)
++.++ ++--+++.+-.+. +..|+-.+++.. ...||..=+. .-++++.+++...+--.
T Consensus 650 --eemkk------------ivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA------~drr~ykqlv~ttv~ia 709 (1172)
T KOG0213|consen 650 --EEMKK------------IVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMA------LDRRNYKQLVDTTVEIA 709 (1172)
T ss_pred --HHHHH------------HHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhh------ccccchhhHHHHHHHHH
Confidence 22211 1111122211110 111222232222 2233332110 00122222222211000
Q ss_pred ccCChh-----hHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHhcccCCCC
Q 003608 355 MCFNDN-----DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK-----ENLQKFIQFIVGIFKRYDETP 424 (808)
Q Consensus 355 l~l~~~-----d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~-----~~~~~il~~i~~~l~~~~~~~ 424 (808)
-.+..+ -+..+.+||+. .|+-...++..+....|. ...+.++.-+.-.++.. .
T Consensus 710 ~KvG~~~~v~R~v~~lkde~e~--------------yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeq---t 772 (1172)
T KOG0213|consen 710 AKVGSDPIVSRVVLDLKDEPEQ--------------YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQ---T 772 (1172)
T ss_pred HHhCchHHHHHHhhhhccccHH--------------HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhc---c
Confidence 000000 01122233333 455566666666665543 22233333333344431 1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhc-CCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC--ChhHHHHH
Q 003608 425 VEYKPYRQKDGALLAIGALCDKLKQ-TEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS--DQNNFRKA 501 (808)
Q Consensus 425 ~~~~~~~~~ea~l~~lg~~a~~l~~-~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~--~~~~~~~~ 501 (808)
. .--..+..+|.++..+.. .++|.. + +...++-.|+++.|-+|-+|+.++|..+.+.-. .+..+..+
T Consensus 773 t------~d~vml~gfg~V~~~lg~r~kpylp---q-i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l 842 (1172)
T KOG0213|consen 773 T------EDSVMLLGFGTVVNALGGRVKPYLP---Q-ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL 842 (1172)
T ss_pred c------chhhhhhhHHHHHHHHhhccccchH---H-HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 1 111345677777777654 334443 2 344566678899999999999999999864311 12344545
Q ss_pred HHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhccccccc
Q 003608 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAP 577 (808)
Q Consensus 502 ~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p 577 (808)
=..+...|....+-|--+-..|++.+++... -....|=+..++..|..++++-... .-...++.|+.+..+.+.+
T Consensus 843 GvvLyEylgeeypEvLgsILgAikaI~nvig-m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a 920 (1172)
T KOG0213|consen 843 GVVLYEYLGEEYPEVLGSILGAIKAIVNVIG-MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA 920 (1172)
T ss_pred hHHHHHhcCcccHHHHHHHHHHHHHHHHhcc-ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH
Confidence 5556677876666666677777777776652 4556677888888888888754332 3456677777776665543
No 89
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.45 E-value=9.1 Score=39.97 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhcccc
Q 003608 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEE 574 (808)
Q Consensus 498 ~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~ 574 (808)
+..-+...+..+.+.....|..|..++...+......+.+......++..+.+.++....++ ...++.-++-.+|..
T Consensus 41 ~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 41 LEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 34445555666666667789999999999987655567777888999999999998765544 235566666665521
Q ss_pred ccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHH-HHcc-----
Q 003608 575 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMR-RMLT----- 648 (808)
Q Consensus 575 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~-~~l~----- 648 (808)
.-..+++..+.+.+.+++..... ..-.+..++.+++-+.-..+..++.+..+.+.+=-++. .+.+
T Consensus 121 --~~~~ei~~~~~~~L~~~l~d~s~-------~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~ 191 (309)
T PF05004_consen 121 --EDSEEIFEELKPVLKRILTDSSA-------SPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNA 191 (309)
T ss_pred --ccHHHHHHHHHHHHHHHHhCCcc-------chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 22345555555555556553221 12234567777765544444444433211111111111 1111
Q ss_pred -----cChhhHHHHHHHHHHHhhhcCCC--CChhhhhhHHHHHHHhhhhHHhhh
Q 003608 649 -----TDGQEVFEEVLEIVSYMTFFSPT--ISLEMWSLWPLMMEALADWAIDFF 695 (808)
Q Consensus 649 -----~~~~~~~e~~l~ll~~~~~~~~~--~~p~l~~~~~~l~~~~~~~~~~~~ 695 (808)
++...+.-.+++-|+.++-..+. +...+...+|.+..++.+.+.++.
T Consensus 192 ~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 192 PVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVR 245 (309)
T ss_pred ccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 12346889999999988854432 333334567777777765545543
No 90
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=0.39 Score=48.93 Aligned_cols=184 Identities=13% Similarity=0.105 Sum_probs=101.2
Q ss_pred cccCCCcchhhHHHHHHHhhhccc-cCC--hhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchH-H
Q 003608 468 EFSSPVGHLRAKAAWVAGQYAHIN-FSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP-Q 543 (808)
Q Consensus 468 ~l~~~~~~lr~~a~~~l~~~~~~~-~~~--~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~-~ 543 (808)
.+.+.++-+|.+++..+|..+--. -+. .+.-+.+++.+++.+.+++..|+..|..||.++..+- ++..|... .
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt---~Yq~eiv~ag 292 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT---EYQREIVEAG 292 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc---hhhhHHHhcC
Confidence 455678899999999999875211 000 0223568999999999999999999999999998663 33333322 1
Q ss_pred HHHHHHHHhhhhchhhHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHH
Q 003608 544 LLDEFFKLMNEVENEDLVFTLETIVDKFG---EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 620 (808)
Q Consensus 544 ll~~l~~ll~~~~~~~l~~~l~~iv~~~~---~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ 620 (808)
-+..+.++++..--..+..-+.+| .+.+ -+-.+.+.. .....+.+++...+ ++ + ......+++.+
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCI-rnisihplNe~lI~da---gfl~pLVrlL~~~d-nE----e---iqchAvstLrn 360 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACI-RNISIHPLNEVLIADA---GFLRPLVRLLRAGD-NE----E---IQCHAVSTLRN 360 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHH-hhcccccCcccceecc---cchhHHHHHHhcCC-ch----h---hhhhHHHHHHH
Confidence 344555666543222222222222 1111 111111111 11112223443222 22 1 23345778888
Q ss_pred HHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhc
Q 003608 621 ILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 668 (808)
Q Consensus 621 li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~ 668 (808)
+..+-+.+...+ .+...+|.+...+-.....+.++.-..+..+..+
T Consensus 361 LAasse~n~~~i--~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 361 LAASSEHNVSVI--RESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred HhhhhhhhhHHH--hhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 877655443322 3466777777666555556777666666666543
No 91
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.31 E-value=6.5 Score=46.89 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcC---CcchHHHHHHHh
Q 003608 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT---EPYKSELERMLV 462 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~---~~~~~~l~~~l~ 462 (808)
....-..+|..++...++-+++.+-.++. .+. ..+...|.+.+-++|.+....... .+....+..-+.
T Consensus 291 g~k~v~~fL~elS~~~P~l~~~~l~~lv~-lld--------~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~l 361 (1251)
T KOG0414|consen 291 GPKIVGNFLVELSERVPKLMLRQLTLLVD-LLD--------SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELL 361 (1251)
T ss_pred chhhHHHHHHHHHHHhHHHHHHHHHHHHH-hcC--------CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 33445667888887776654443333332 332 257899999999999876553221 111122222122
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc
Q 003608 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 463 ~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (808)
..+...+.+-++++|.+++.+..+.....-.+......++..++..+.|.+..||..|+.-+..++...+
T Consensus 362 e~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 362 ELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 2333345577899999999999887664433446789999999999999999999999999999998753
No 92
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.16 E-value=11 Score=38.79 Aligned_cols=162 Identities=12% Similarity=0.189 Sum_probs=84.9
Q ss_pred hHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccc---ccc--chHHHHHHHHHHh
Q 003608 478 AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE---IRP--ILPQLLDEFFKLM 552 (808)
Q Consensus 478 ~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~---l~p--~l~~ll~~l~~ll 552 (808)
....|++.+-.+.. .-.+++.-+++.++..++|.++.+|..+|..+..+++... ... ++. ..+-+-+.+..++
T Consensus 98 ~~l~w~v~~~~~~~-~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~-~~~~~~L~~tGl~~v~~~al~~~L 175 (282)
T PF10521_consen 98 HVLSWIVLSQLDRP-WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP-AAEWDILRRTGLFSVFEDALFPCL 175 (282)
T ss_pred HHHHHHHHhcCCcc-hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC-hhhhHHHHHcChHHHHHHHHHHHh
Confidence 34577776222211 0125788999999999999999999999999999999764 222 222 2333333333333
Q ss_pred h---hh-c-hh--h----HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHH
Q 003608 553 N---EV-E-NE--D----LVFTLETIVDKF-GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIST 620 (808)
Q Consensus 553 ~---~~-~-~~--~----l~~~l~~iv~~~-~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~ 620 (808)
- .. . .+ . ...++-.++... .+.=.++...+...+.+.++.-+.....- .........++.+..
T Consensus 176 ~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~-----~~~~l~~~ll~~l~~ 250 (282)
T PF10521_consen 176 YYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSF-----SYPRLRTVLLQQLPP 250 (282)
T ss_pred hcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceecccc-----CchhHHHHHHHHHHH
Confidence 2 21 1 11 1 223333343322 22222344444444433222222221110 012234567777888
Q ss_pred HHHhhcCChHHHHHHHhhHHHHHHHHccc
Q 003608 621 ILESVSRLPHLFVQIEPTLLPIMRRMLTT 649 (808)
Q Consensus 621 li~~~~~~~~~~~~~~~~~~p~i~~~l~~ 649 (808)
+++.+|...-. .-+.++|++..++++
T Consensus 251 ~i~~lGi~~~~---hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 251 IIDELGISSVK---HLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHhccHHHH---HHHHHHHHHHHHhcC
Confidence 88877753322 236677777776654
No 93
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.16 E-value=22 Score=41.70 Aligned_cols=407 Identities=17% Similarity=0.158 Sum_probs=204.4
Q ss_pred CCCHHHHHHHHHHHHHhhc-------CCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHH
Q 003608 15 SPNPEERKAAEHSLNQFQY-------TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKD 87 (808)
Q Consensus 15 s~d~~~r~~Ae~~L~~~~~-------~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~ 87 (808)
..++.+|+.+...+-.+.+ ..+....+.++..+. ...||.+|.=.+ ..+-...+. +.+...
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Dd--qdsVr~~a~~~~-~~l~~l~~~---------~~d~~~ 315 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDD--QDSVREAAVESL-VSLLDLLDD---------DDDVVK 315 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcc--hhhHHHHHHHHH-HHHHHhcCC---------chhhhh
Confidence 3557788888877765542 123445555565543 357888664333 333333332 115677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCC-CCChhHHHHHHHHhchh--hHHHHHHH-HHHHHHHcccCCcCCcc
Q 003608 88 MVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ--QVYGALFV-LRILSRKYEFKSDEERT 163 (808)
Q Consensus 88 ~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~--~~~~~L~~-L~~i~~~~~~~~~~~~~ 163 (808)
.+-+.+++...+++..+|...+.....+.+.--| ..|+++.+.....+... ..+.+... ..++....+ .+.+.
T Consensus 316 ~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~---~~~~~ 392 (759)
T KOG0211|consen 316 SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN---ASCYP 392 (759)
T ss_pred hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC---ccccc
Confidence 7788888888888889998888888888877667 56999999888888766 22222211 112222111 11110
Q ss_pred hHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCC
Q 003608 164 PVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEP 243 (808)
Q Consensus 164 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (808)
....+..+|.+..++.+. + ..++.......... ....| .+..+....+.+...++..
T Consensus 393 --~i~~~~ilp~~~~lv~d~------~---~~vr~a~a~~~~~~-~p~~~----k~~ti~~llp~~~~~l~de------- 449 (759)
T KOG0211|consen 393 --NIPDSSILPEVQVLVLDN------A---LHVRSALASVITGL-SPILP----KERTISELLPLLIGNLKDE------- 449 (759)
T ss_pred --ccchhhhhHHHHHHHhcc------c---chHHHHHhcccccc-CccCC----cCcCccccChhhhhhcchh-------
Confidence 011223456555444321 1 11111111111000 00011 1122233333333332211
Q ss_pred CChhhhhhccchHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCHHHHHHHH
Q 003608 244 ADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLIL 323 (808)
Q Consensus 244 ~d~~~~~~~~~~~~k~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 323 (808)
+. .++-.+.+.+..+-....... .....+..+..+... .+...-+++..++
T Consensus 450 -~~---------~V~lnli~~ls~~~~v~~v~g-----------------~~~~s~slLp~i~el--~~d~~wRvr~ail 500 (759)
T KOG0211|consen 450 -DP---------IVRLNLIDKLSLLEEVNDVIG-----------------ISTVSNSLLPAIVEL--AEDLLWRVRLAIL 500 (759)
T ss_pred -hH---------HHHHhhHHHHHHHHhccCccc-----------------chhhhhhhhhhhhhh--ccchhHHHHHHHH
Confidence 10 111111111111111100000 000111111111110 0111345666666
Q ss_pred HHHHhhcCCchhhhhchhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHHhccc
Q 003608 324 QYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGK 403 (808)
Q Consensus 324 ~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~ 403 (808)
+++........ ...+.+.+.+++ ..|.. +-.++.|.+|...+..++..+|.
T Consensus 501 ~~ip~la~q~~-~~~~~~~~~~l~---------------~~~l~-------------d~v~~Ir~~aa~~l~~l~~~~G~ 551 (759)
T KOG0211|consen 501 EYIPQLALQLG-VEFFDEKLAELL---------------RTWLP-------------DHVYSIREAAARNLPALVETFGS 551 (759)
T ss_pred HHHHHHHHhhh-hHHhhHHHHHHH---------------Hhhhh-------------hhHHHHHHHHHHHhHHHHHHhCc
Confidence 66655443221 112222222211 12211 12477899999999999999984
Q ss_pred chHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHH
Q 003608 404 ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWV 483 (808)
Q Consensus 404 ~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~ 483 (808)
+-. ....+.+.+.... ..+|..|-+.++++..+++.+.+.. +..++-+.+. ....++.|-+|-.++..
T Consensus 552 ~w~--~~~~i~k~L~~~~-----q~~y~~R~t~l~si~~la~v~g~ei-~~~~Llp~~~----~l~~D~vanVR~nvak~ 619 (759)
T KOG0211|consen 552 EWA--RLEEIPKLLAMDL-----QDNYLVRMTTLFSIHELAEVLGQEI-TCEDLLPVFL----DLVKDPVANVRINVAKH 619 (759)
T ss_pred chh--HHHhhHHHHHHhc-----CcccchhhHHHHHHHHHHHHhccHH-HHHHHhHHHH----HhccCCchhhhhhHHHH
Confidence 321 1122223332211 1379999999999999998876521 1222323222 23447888999999999
Q ss_pred HHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 484 AGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 484 l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
+-.+.... ..+..-..++++....-.|++.-||+.|..|+..+...
T Consensus 620 L~~i~~~L-~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 620 LPKILKLL-DESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 98887654 22233455666666666688888999999999887544
No 94
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=6 Score=45.48 Aligned_cols=188 Identities=12% Similarity=0.156 Sum_probs=117.2
Q ss_pred HHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHH---HHHHhccccc
Q 003608 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLE---TIVDKFGEEM 575 (808)
Q Consensus 499 ~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~---~iv~~~~~~i 575 (808)
.+.++..+..+.|+.+++|.+|...+..+++..+ ..-.-....++...+..+.+-++=....++. ++++.+.+.+
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~--~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRK--KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcc--hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 4457888888999999999999999999998642 2222244567777777666544433556666 6677777766
Q ss_pred cchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHH
Q 003608 576 APYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVF 655 (808)
Q Consensus 576 ~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~ 655 (808)
.| .|...+.. +..... .+..+ .+=+++..++++.|+ .+....+.+...+...+..+...+.
T Consensus 804 l~-------dL~e~Y~s---~k~k~~---~d~~l---kVGEai~k~~qa~Ge---l~~~y~~~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 804 LP-------DLSEEYLS---EKKKLQ---TDYRL---KVGEAILKVAQALGE---LVFKYKAVLINTFLSGVREPDHEFR 864 (982)
T ss_pred HH-------HHHHHHHh---cccCCC---cccee---hHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHhcCCchHHHH
Confidence 55 23221211 111110 12222 233889999999885 3333445566666666665666788
Q ss_pred HHHHHHHHHhhhc-CCCCChhhhhhHHHHHHHhhhhHH-hhhhhhhhhhhhhhc
Q 003608 656 EEVLEIVSYMTFF-SPTISLEMWSLWPLMMEALADWAI-DFFPNILVPLDNYIS 707 (808)
Q Consensus 656 e~~l~ll~~~~~~-~~~~~p~l~~~~~~l~~~~~~~~~-~~~~~~~~~L~~~i~ 707 (808)
-.++..++.+.+. ...++..+.+.+..+..+...++. -...+.+.++...+.
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 8888888888763 456777777888888777644333 334455555554443
No 95
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.85 E-value=3.8 Score=48.76 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=46.6
Q ss_pred cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc
Q 003608 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 474 ~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (808)
+-.|..|+.++..++.+. .++..+..+++.++.++.|+...||..|..+|..++....
T Consensus 437 ~~tK~~ALeLl~~lS~~i-~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr 494 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYI-DDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR 494 (1431)
T ss_pred chhHHHHHHHHHHHhhhc-chHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence 345667777777777654 3456789999999999999999999999999999987643
No 96
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=92.84 E-value=0.38 Score=44.97 Aligned_cols=89 Identities=27% Similarity=0.428 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhH---HHHHHHH---HHhc
Q 003608 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL---VFTLETI---VDKF 571 (808)
Q Consensus 498 ~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l---~~~l~~i---v~~~ 571 (808)
+..+++.++..|.+.+.+-+..|..++..+++.. ..+.+.|.+|+++..+-..+++-+.+.. +.+|..+ -...
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 5788999999999888889999999999999883 4788999999999999999998776654 4555555 3456
Q ss_pred cccccchHHHHHHHHH
Q 003608 572 GEEMAPYALGLCQNLA 587 (808)
Q Consensus 572 ~~~i~p~~~~l~~~L~ 587 (808)
|+.+.||..++...+.
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8889999988887665
No 97
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.52 E-value=2.4 Score=42.68 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=80.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
.+...++.++.++|..+..-... ++..++.. ...+...+++++|-+|.+|++++..++... .+....+..++.+++
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq-~~Ir~~Gg--i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~Ik~~i~~Vc~ 100 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQ-DIIRDLGG--ISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQIKMYIPQVCE 100 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHH-HHHHHcCC--HHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHHHH
Confidence 47889999999999877542111 11111111 112334566789999999999999887532 344445556666665
Q ss_pred cCC-C-CCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHH
Q 003608 508 GLR-D-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIV 568 (808)
Q Consensus 508 ~l~-~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv 568 (808)
.+. + -+..++.++.++|.++.-.......+..+ +..++.++...+...-..++..++
T Consensus 101 ~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~----i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 101 ETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANY----IPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred HHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhh----HHHHHHHHHcCChHHHHHHHHHHH
Confidence 433 2 25679999999998885332223444444 555666777655544456666544
No 98
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.03 E-value=0.059 Score=44.35 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=40.9
Q ss_pred cCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHH
Q 003608 470 SSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (808)
Q Consensus 470 ~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~ 527 (808)
+++++.+|..|++++|++.+ ..+++.++..++|+++.||..|+.||..+
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 57889999999999996532 35677777777899999999999999976
No 99
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.11 E-value=27 Score=38.32 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=59.7
Q ss_pred hhhHHHHHHHhhhccccCCh--hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHH
Q 003608 476 LRAKAAWVAGQYAHINFSDQ--NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKL 551 (808)
Q Consensus 476 lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~l 551 (808)
.|...+..++..-+...+.. ..+..++|.+++.|+-++..|+.++..++..++++. ++.+.+|+..++..|+++
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEHLSSLIPRLLKL 414 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHhc
Confidence 66666667766655442221 568999999999998788889999999999999985 799999999999998875
No 100
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.10 E-value=2.8 Score=39.86 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHhh-cCCCh----HHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHH
Q 003608 17 NPEERKAAEHSLNQFQ-YTPQH----LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRD 91 (808)
Q Consensus 17 d~~~r~~Ae~~L~~~~-~~p~f----~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~ 91 (808)
|+.+|..|=-.+..+- +.|+. ...+...+.+ .++.||..|.+.|.+.+...+-+ .|..+=.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D--~~~~VR~~al~~Ls~Li~~d~ik------------~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRD--EDPLVRKTALLVLSHLILEDMIK------------VKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCcee------------ehhhhhH
Confidence 4667777777777664 56764 3455555544 46899999999999999886664 2334445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhch
Q 003608 92 HILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD 137 (808)
Q Consensus 92 ~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s 137 (808)
.++.++.++++.||.....++..+...-.|+.-.+.+++++..+++
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 5667778999999999999999999987787777777777777655
No 101
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.10 E-value=36 Score=39.68 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=67.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHH--HHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKA--LHSV 505 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~--~~~l 505 (808)
.|...|-.|+..++.+... .+ +++++ .-|...++++|+++|+.|+.+++.+-+. ++++.... ....
T Consensus 104 ~N~~iR~~AlR~ls~l~~~-----el---~~~~~-~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l 171 (757)
T COG5096 104 PNEEIRGFALRTLSLLRVK-----EL---LGNII-DPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDIL 171 (757)
T ss_pred CCHHHHHHHHHHHHhcChH-----HH---HHHHH-HHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHH
Confidence 4789999999999976543 11 22322 2344567899999999999999987653 23333333 3333
Q ss_pred HhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHH
Q 003608 506 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (808)
Q Consensus 506 l~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l 548 (808)
-..+.|+++.|...|..++..+.++ ...+|.......+
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i~~e-----~a~~~~~~~~~~i 209 (757)
T COG5096 172 KELVADSDPIVIANALASLAEIDPE-----LAHGYSLEVILRI 209 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHhchh-----hhhhHHHHHHHHh
Confidence 3445688999998998888877644 3344444444433
No 102
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.91 E-value=50 Score=41.03 Aligned_cols=135 Identities=21% Similarity=0.278 Sum_probs=86.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhhCC-CCChhHHHHHHHHhchh--hH-HHHHHHHHHHHHHcccCCcCCcchHHHH
Q 003608 93 ILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRI 168 (808)
Q Consensus 93 ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~~~~~~~~~~~~~~~~ 168 (808)
++..+.++...+|+..-.|++.|+..|-- -.-|+.-..+-+.+.++ .+ ++|+..+..++-.+ ++.
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-----------~e~ 889 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-----------PEL 889 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-----------HHH
Confidence 44555677789999999999999998832 45677877887777666 44 77777776666322 123
Q ss_pred HHHHhHHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCCCCCCCCCCChhh
Q 003608 169 VEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQ 248 (808)
Q Consensus 169 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~ 248 (808)
+.+++..+- .... +....+++.++||++.... +. +.|......+..+|.+- .|++.
T Consensus 890 ~~qyY~~i~---erIl------DtgvsVRKRvIKIlrdic~-e~-------pdf~~i~~~cakmlrRv-------~DEEg 945 (1692)
T KOG1020|consen 890 IFQYYDQII---ERIL------DTGVSVRKRVIKILRDICE-ET-------PDFSKIVDMCAKMLRRV-------NDEEG 945 (1692)
T ss_pred HHHHHHHHH---hhcC------CCchhHHHHHHHHHHHHHH-hC-------CChhhHHHHHHHHHHHh-------ccchh
Confidence 333333221 1211 2236689999999998642 22 34566677778888762 34332
Q ss_pred hhhccchHHHHHHHHHHHHHH
Q 003608 249 RKSWGWWKVKKWTVHILNRLY 269 (808)
Q Consensus 249 ~~~~~~~~~k~~~~~~l~~l~ 269 (808)
.+++.+++.+.++.
T Consensus 946 -------~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 946 -------NIKKLVRETFLKLW 959 (1692)
T ss_pred -------HHHHHHHHHHHHHh
Confidence 47788888887775
No 103
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.75 E-value=13 Score=37.74 Aligned_cols=218 Identities=14% Similarity=0.215 Sum_probs=123.9
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhh--HHHHHHHhhhccccCChhHHHHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRA--KAAWVAGQYAHINFSDQNNFRKALHSV 505 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~--~a~~~l~~~~~~~~~~~~~~~~~~~~l 505 (808)
+++..|.-++..++.+-+.+....=-..++ ++|..+...-+.+ ++-++. +++..+-+... + +.+....+++.+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev-~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~~~--~-~~~~~~~i~~~l 85 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEV-QVLLDFFCSRLDD-HACVQPALKGLLALVKMKN--F-SPESAVKILRSL 85 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHH-HHHHHHHHHHhcc-HhhHHHHHHHHHHHHhCcC--C-ChhhHHHHHHHH
Confidence 588999999999998888876421011222 3333333333433 333332 33333333222 1 234577888888
Q ss_pred HhcCCCC--CCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhccccccchH
Q 003608 506 VSGLRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGEEMAPYA 579 (808)
Q Consensus 506 l~~l~~~--~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~----l~~~l~~iv~~~~~~i~p~~ 579 (808)
++..+.+ ....|...-.-+..++++. .+.+...-+.++..++++++.-.... ....+..++..+. +.+++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~ 161 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFA 161 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhH
Confidence 8766533 3458888888889888874 56667777888888888876432222 3344555666665 35666
Q ss_pred HHHHHHHHHHHHHH-HhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHH
Q 003608 580 LGLCQNLAAAFWRC-MNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEV 658 (808)
Q Consensus 580 ~~l~~~L~~~~~~~-~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~ 658 (808)
.++...+.- +.-+ .....+|| . .+++..+-..+. ..+..+| .+.+..+|.+..-+.......-.|+
T Consensus 162 e~lFd~~~c-YFPI~F~pp~~dp----~-~IT~edLk~~L~---~cl~s~~----~fa~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 162 EDLFDVFSC-YFPITFRPPPNDP----Y-GITREDLKRALR---NCLSSTP----LFAPFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred HHHHHHhhh-eeeeeeeCCCCCC----C-CCCHHHHHHHHH---HHhcCcH----hhHHHHHHHHHHHHcCCCcHHHHHH
Confidence 666654432 1111 12222232 1 122222222222 2222333 2347889998888887777777888
Q ss_pred HHHHHHhhh
Q 003608 659 LEIVSYMTF 667 (808)
Q Consensus 659 l~ll~~~~~ 667 (808)
++.+...+.
T Consensus 229 L~tL~~c~~ 237 (262)
T PF14500_consen 229 LQTLKACIE 237 (262)
T ss_pred HHHHHHHHH
Confidence 888887765
No 104
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=90.16 E-value=14 Score=43.06 Aligned_cols=334 Identities=11% Similarity=0.069 Sum_probs=153.2
Q ss_pred hhHHHHHHHHHHHHHHhhcCC-cchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChh-HHHHHHHHHHhc
Q 003608 431 RQKDGALLAIGALCDKLKQTE-PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQN-NFRKALHSVVSG 508 (808)
Q Consensus 431 ~~~ea~l~~lg~~a~~l~~~~-~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~-~~~~~~~~ll~~ 508 (808)
.....+++++..+|+...-.. ..+..+.++|.. .|..++.-+..-+..++.+.+-+...... .-..+++.+...
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~----~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVK----CLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHH----HHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 344577777888877643211 011122233333 23445555666677777776633211111 245677888888
Q ss_pred CCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-HHHHHHHHHH--hccccccchHHHHHHH
Q 003608 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVD--KFGEEMAPYALGLCQN 585 (808)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~-l~~~l~~iv~--~~~~~i~p~~~~l~~~ 585 (808)
+.+++..++..|..+|.++..+...+..+.. ..+++.|..+++..+... ...++..+.. ..+..+ .+- +.++.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f-~~T-dcIp~ 415 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMF-AYT-DCIPQ 415 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHH-hhc-chHHH
Confidence 8877777888899998888765432222221 114445555665433222 2222222211 111111 111 22333
Q ss_pred HHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHH-H-hhHHHHHHHHcccChhhHHHHHHHHHH
Q 003608 586 LAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-E-PTLLPIMRRMLTTDGQEVFEEVLEIVS 663 (808)
Q Consensus 586 L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~-~-~~~~p~i~~~l~~~~~~~~e~~l~ll~ 663 (808)
+++ .+....+++ .. .+.+.-++ .+..++....-+ + +.+-.++...++... .-.+.++.
T Consensus 416 L~~----~Ll~~~~~~-----v~------~eliaL~i-NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIR 475 (708)
T PF05804_consen 416 LMQ----MLLENSEEE-----VQ------LELIALLI-NLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIR 475 (708)
T ss_pred HHH----HHHhCCCcc-----cc------HHHHHHHH-HHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHH
Confidence 333 222211111 00 11122111 111122111111 1 223333333333221 22345666
Q ss_pred HhhhcCCCCChhhhhhHHHHHHHhh-hhHHhhhhhhhhhhhhhhccC--cccccccCCchHHHHHHHHHHHHhcCCCCCC
Q 003608 664 YMTFFSPTISLEMWSLWPLMMEALA-DWAIDFFPNILVPLDNYISRG--TAHFLTCKEPDYQQSLWSMVSSIMADKNLED 740 (808)
Q Consensus 664 ~~~~~~~~~~p~l~~~~~~l~~~~~-~~~~~~~~~~~~~L~~~i~~~--~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~ 740 (808)
++..+.++....+....+.+++++. ..+.++.-+++.+|.|.-..+ ...+++ + ..++..+.+.|.+...++
T Consensus 476 NiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~--~----~~llp~L~~~L~~g~~~d 549 (708)
T PF05804_consen 476 NISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQ--E----YNLLPWLKDLLKPGASED 549 (708)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHH--h----CCHHHHHHHHhCCCCCCh
Confidence 6666554333333344444555543 235667777777777764432 222331 1 123445556665443333
Q ss_pred CccCchhHHHHHHHHHcCcCcccchH--HHHHHHHHHHhhc-hhhHHHHHHHHHHHHhHhhCh
Q 003608 741 GDIEPAPKLIEVVFQNCKGQVDHWVE--PYLRITVERLRRA-EKSYLKCLLVQVVSFHERANS 800 (808)
Q Consensus 741 ~~~~~a~~ll~~ii~~~~~~~~~~l~--~il~~~~~~l~~~-~~~~~~~~~~~~i~~~~~~n~ 800 (808)
.-...+..+++.+.. ....++.+. +++..++.-|+.+ ++.++-..++.++-..+.+++
T Consensus 550 Dl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 550 DLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH
Confidence 211222233332221 222445544 6778888888764 577777777777777777754
No 105
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.97 E-value=35 Score=37.70 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=44.1
Q ss_pred CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHH
Q 003608 472 PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (808)
Q Consensus 472 ~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~ 528 (808)
.+.++|++|..++++|+--. .++-..+.+..++-.|++|.+.-||..|..+++.+=
T Consensus 499 EN~ivRsaAv~aLskf~ln~-~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNI-SDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hhhHHHHHHHHHHHHhccCc-cccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 46789999999999998422 233335667777778899999999999999998875
No 106
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.95 E-value=1.8 Score=35.80 Aligned_cols=75 Identities=27% Similarity=0.468 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhcccccc
Q 003608 500 KALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMA 576 (808)
Q Consensus 500 ~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~i~ 576 (808)
..++.++..++|+.+|||..|...|.+++... ..-...++.++..++..+++.++=- ....+..++..+.+.+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~---~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESK---SEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcC---CcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHH
Confidence 45677788889999999999999999999875 2334457788888877777643322 34445555666655443
Q ss_pred c
Q 003608 577 P 577 (808)
Q Consensus 577 p 577 (808)
|
T Consensus 80 ~ 80 (92)
T PF10363_consen 80 P 80 (92)
T ss_pred H
Confidence 3
No 107
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.68 E-value=42 Score=38.22 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=46.6
Q ss_pred ChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHH
Q 003608 51 DLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDW 130 (808)
Q Consensus 51 ~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~ 130 (808)
-+.+|.=|...+-+..-+| |+.-|..+. .|.+-|.++|+.|.++.-.+|-.+|+.+ |..+=.|=|.
T Consensus 157 kpYvRKkAIl~lykvFLkY------------PeAlr~~Fp-rL~EkLeDpDp~V~SAAV~VICELArKn-PknyL~LAP~ 222 (877)
T KOG1059|consen 157 KPYVRKKAILLLYKVFLKY------------PEALRPCFP-RLVEKLEDPDPSVVSAAVSVICELARKN-PQNYLQLAPL 222 (877)
T ss_pred chHHHHHHHHHHHHHHHhh------------hHhHhhhHH-HHHHhccCCCchHHHHHHHHHHHHHhhC-CcccccccHH
Confidence 3467777765555544443 232333332 2445566788888888888888888865 7777667777
Q ss_pred HHHHhchh
Q 003608 131 VKHNLQDQ 138 (808)
Q Consensus 131 l~~~l~s~ 138 (808)
++.++.++
T Consensus 223 ffkllttS 230 (877)
T KOG1059|consen 223 FYKLLVTS 230 (877)
T ss_pred HHHHHhcc
Confidence 77776554
No 108
>PF05536 Neurochondrin: Neurochondrin
Probab=89.53 E-value=14 Score=41.88 Aligned_cols=243 Identities=14% Similarity=0.179 Sum_probs=131.4
Q ss_pred HHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc-----cccccccchHHHHHHHHHHhhhhc---hhhH----HHHHHHHH
Q 003608 501 ALHSVVSGLRDPELPVRVDSVFALRSFVEACR-----DLNEIRPILPQLLDEFFKLMNEVE---NEDL----VFTLETIV 568 (808)
Q Consensus 501 ~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~-----~~~~l~p~l~~ll~~l~~ll~~~~---~~~l----~~~l~~iv 568 (808)
.++.+++.|+..+..=|..|..-+.++++..+ .+..+...-+.++.+|+.--...+ .... +.++.++.
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 34455555554444456666666677766532 011223334566776665433211 1121 23333333
Q ss_pred HhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcc
Q 003608 569 DKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLT 648 (808)
Q Consensus 569 ~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~ 648 (808)
. .+++.. -++++..++ .+.+++....+ .-...-+++|+..++ +-.+.+..+ ++...+|.+..++.
T Consensus 86 ~--~~~~a~-~~~~~~~IP-~Lle~l~~~s~--------~~~v~dalqcL~~Ia-s~~~G~~aL--l~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 86 R--DPELAS-SPQMVSRIP-LLLEILSSSSD--------LETVDDALQCLLAIA-SSPEGAKAL--LESGAVPALCEIIP 150 (543)
T ss_pred C--Chhhhc-CHHHHHHHH-HHHHHHHcCCc--------hhHHHHHHHHHHHHH-cCcHhHHHH--HhcCCHHHHHHHHH
Confidence 2 233332 134444443 34445543221 113346778887776 322222222 33456666666664
Q ss_pred cChhhHHHHHHHHHHHhhhcCC-----CCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCccc-ccccCCchHH
Q 003608 649 TDGQEVFEEVLEIVSYMTFFSP-----TISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH-FLTCKEPDYQ 722 (808)
Q Consensus 649 ~~~~~~~e~~l~ll~~~~~~~~-----~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~-~l~~~~~~~~ 722 (808)
+ .....|.++.+|..++.... .-...+..+.+.+.+.+......---+.+..|.+|+...+.. .....++.+.
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 4 45668999999998876542 122334455565655553221112234467777777766311 1112566899
Q ss_pred HHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC
Q 003608 723 QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ 760 (808)
Q Consensus 723 ~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~ 760 (808)
..+...+..+++++ .....+..+..+...++..+|.+
T Consensus 230 ~~l~~gl~~iL~sr-~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 230 SDLRKGLRDILQSR-LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhChH
Confidence 99999999999754 45555778899999999998864
No 109
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.49 E-value=24 Score=40.49 Aligned_cols=213 Identities=12% Similarity=0.175 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCC-CCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh--hchhhHHHHHHHHHHhccccc
Q 003608 499 RKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE--VENEDLVFTLETIVDKFGEEM 575 (808)
Q Consensus 499 ~~~~~~ll~~l~~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~--~~~~~l~~~l~~iv~~~~~~i 575 (808)
...++.++..+.+ .=+-=|-.|+.+|+.|..... ......-++++++. ++. .+.+.+..+|+++...+..+=
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR-~~Vga~Gmk~li~v----L~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYR-EEVGAQGMKPLIQV----LQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH-HHHHHcccHHHHHH----HhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 3444444444432 222237799999999988752 23333344444443 332 234456677777765543210
Q ss_pred c------c-hHHHHHHHH----------HHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHh
Q 003608 576 A------P-YALGLCQNL----------AAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLP-HLFVQIEP 637 (808)
Q Consensus 576 ~------p-~~~~l~~~L----------~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~-~~~~~~~~ 637 (808)
. + ...++-..+ +..++..|+.. |. ..+-+.++.++.++..-+..- .+.. ..+
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--------DF-~VR~~aIqLlsalls~r~~e~q~~ll-~~P 165 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--------DF-HVRLYAIQLLSALLSCRPTELQDALL-VSP 165 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--------ch-hhhhHHHHHHHHHHhcCCHHHHHHHH-HCc
Confidence 0 0 111211111 12233334321 11 133455677777765432111 1110 112
Q ss_pred hHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChh--hhhhHHHHHHHhhh----hHHhhhhhhhhhhhhhhccC--
Q 003608 638 TLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLE--MWSLWPLMMEALAD----WAIDFFPNILVPLDNYISRG-- 709 (808)
Q Consensus 638 ~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~--l~~~~~~l~~~~~~----~~~~~~~~~~~~L~~~i~~~-- 709 (808)
.-+..+...+....+....+++-++..+++.++.+... +-.+|..++++++. +|--++.+++-++++.+.+.
T Consensus 166 ~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 166 MGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred hhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence 22222333333333456789999999999877766554 34789999999853 22336788888888887754
Q ss_pred cccccccCCchHHHHHHHH
Q 003608 710 TAHFLTCKEPDYQQSLWSM 728 (808)
Q Consensus 710 ~~~~l~~~~~~~~~~l~~~ 728 (808)
.+.|+ ...+|++.+.++
T Consensus 246 NQ~~F--rE~~~i~rL~kl 262 (970)
T KOG0946|consen 246 NQNFF--REGSYIPRLLKL 262 (970)
T ss_pred hhhHH--hccccHHHHHhh
Confidence 22333 223677776543
No 110
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.20 E-value=14 Score=38.38 Aligned_cols=166 Identities=18% Similarity=0.156 Sum_probs=106.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhc-----CCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhH
Q 003608 11 QGALSPNPEERKAAEHSLNQFQY-----TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVD 85 (808)
Q Consensus 11 ~~~ls~d~~~r~~Ae~~L~~~~~-----~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~ 85 (808)
-+..++|+.+|..|=+-|.-+.- ...+...+.+.+.. + +..+|-.|.-.+=..+..|=...-......-.+..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 36778999999999988886541 22466667777743 4 78888888666555555442211000000012334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHHhchh---hHHHHHHHHHHHHHHcccCCcCCc
Q 003608 86 KDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKSDEER 162 (808)
Q Consensus 86 k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~~~~~ 162 (808)
...+-+.+.+.+.+.+..++...++.++++.-.+--..||+++..++-..=++ .....-+||..++..|.+.+.+.+
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q 191 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQ 191 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHH
Confidence 56777888888877788999999999999998876555799999888766554 223445688888888876443222
Q ss_pred chHHHHHHHHhHHHHHHHH
Q 003608 163 TPVYRIVEETFHHLLNIFN 181 (808)
Q Consensus 163 ~~~~~~~~~~~p~l~~~~~ 181 (808)
+ .+...+.|.+..++.
T Consensus 192 ~---~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 192 E---RLAEAFLPTLRTLSN 207 (298)
T ss_pred H---HHHHHHHHHHHHHHh
Confidence 2 233344555555444
No 111
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.11 E-value=52 Score=38.54 Aligned_cols=235 Identities=13% Similarity=0.156 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCC
Q 003608 435 GALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE 513 (808)
Q Consensus 435 a~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~-~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 513 (808)
.++.+++..++...... ++.+-+.+..+..+. +..+.+|.+|+..+..|++... -.+..+.++.++++...+.+
T Consensus 469 Ra~~~i~~fs~~~~~~~----~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~~~p~ild~L~qlas~~s 543 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINP----QLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLSLQPMILDGLLQLASKSS 543 (1005)
T ss_pred HHHHHHHHHHhhhccch----hHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccccchHHHHHHHHHccccc
Confidence 66667776655533322 222222222233333 4567888888888877775321 12567888888888876655
Q ss_pred CchHHhHHHHHHHHHHhcc-ccccccc-chHHHHHHHHHHhhhhchhhHHHHHHHHHHhc---cccccchHHHHHHHHHH
Q 003608 514 LPVRVDSVFALRSFVEACR-DLNEIRP-ILPQLLDEFFKLMNEVENEDLVFTLETIVDKF---GEEMAPYALGLCQNLAA 588 (808)
Q Consensus 514 ~~V~~~A~~al~~~~~~~~-~~~~l~p-~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~---~~~i~p~~~~l~~~L~~ 588 (808)
.-|-..-..||...|.-.. ....... ..|.++...+...+.. .+....+.+++.. .+.-.|+...++..+++
T Consensus 544 ~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP---~V~~~~qd~f~el~q~~~~~g~m~e~~iPslis 620 (1005)
T KOG2274|consen 544 DEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP---QVASLAQDLFEELLQIAANYGPMQERLIPSLIS 620 (1005)
T ss_pred HHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 5566666777777775432 2222222 2233333333222221 2333333332221 12334555555555544
Q ss_pred HHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHc-ccChhhHHHHHHHHHHHhhh
Q 003608 589 AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRML-TTDGQEVFEEVLEIVSYMTF 667 (808)
Q Consensus 589 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l-~~~~~~~~e~~l~ll~~~~~ 667 (808)
+++.+.+.. ..-...-.++.++++++.-.. +.-..+..+++|.+..|. ..++.+.+.-+-+++..++.
T Consensus 621 ----il~~~~~~~-----~~~l~~~aidvLttvvr~tp~--pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 621 ----VLQLNADKA-----PAGLCAIAIDVLTTVLRNTPS--PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred ----HHcCccccc-----CchhhHHHHHHHHHHHhcCCC--CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 554433111 011223457788888877532 233345577777777665 44666777777777777776
Q ss_pred cC--------CCCChhhhhhHHHHHHHhh
Q 003608 668 FS--------PTISLEMWSLWPLMMEALA 688 (808)
Q Consensus 668 ~~--------~~~~p~l~~~~~~l~~~~~ 688 (808)
.. ..-.-.+|.++..+..++.
T Consensus 690 ~~~eq~~t~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 690 VTLEQLLTWHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred cCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence 52 1111227888887777764
No 112
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=15 Score=38.09 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=69.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH--HHHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN--FRKALHSV 505 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~--~~~~~~~l 505 (808)
.+...++.++.-+....+.+...+++. .+..+ .. ++..++++++-||..|.|++|..+.-..+.++. =...++.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~-~~ggl-~~-ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLI-SLGGL-VP-LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHh-hccCH-HH-HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 478999999999998888876554432 22222 22 222677889999999999999987643222211 11245555
Q ss_pred HhcCC-CCCCchHHhHHHHHHHHHHhcc
Q 003608 506 VSGLR-DPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 506 l~~l~-~~~~~V~~~A~~al~~~~~~~~ 532 (808)
+..+. +.+..+|..|..|+..++++.+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCc
Confidence 55554 4566799999999999998853
No 113
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.19 E-value=20 Score=38.60 Aligned_cols=185 Identities=15% Similarity=0.180 Sum_probs=111.3
Q ss_pred CCHHHHHHH-HHHHHHHh-cc--cchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHH
Q 003608 384 YSPRTASMD-FVSELVRK-RG--KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELER 459 (808)
Q Consensus 384 ~s~r~~a~~-ll~~l~~~-~~--~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~ 459 (808)
-+-|..|.. +...+++. ++ ++.+..|+..+.+.+... .+...|.-|+..++-+...-... +.+.-+-
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-------~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ 371 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-------EDEIIKKLALRVLREMLTNQPAR--LFDSTEI 371 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-------hhhHHHHHHHHHHHHHHHhchHh--hhchHHH
Confidence 345555654 55555442 22 345666777777777652 46788888999888776553221 1111111
Q ss_pred HHhhcccccccCCCc-chhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccc
Q 003608 460 MLVQHVFPEFSSPVG-HLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR 538 (808)
Q Consensus 460 ~l~~~v~~~l~~~~~-~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~ 538 (808)
.+.. ++..-.+.++ .+|.++=-|+.-.+.+. +......+-+.++. .+.+.-+.+...+.++++.. ..+.+.
T Consensus 372 ai~K-~Leaa~ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l-~~EeL~ 443 (516)
T KOG2956|consen 372 AICK-VLEAAKDSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERL-SAEELL 443 (516)
T ss_pred HHHH-HHHHHhCCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhc-CHHHHH
Confidence 1222 2222334444 44444433333334432 21222333333332 45556667777999999887 488899
Q ss_pred cchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhcc-ccccchHHHHHHH
Q 003608 539 PILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFG-EEMAPYALGLCQN 585 (808)
Q Consensus 539 p~l~~ll~~l~~ll~~~~~~---~l~~~l~~iv~~~~-~~i~p~~~~l~~~ 585 (808)
+.++.++..+++..+..++. ..+.+|=+++.+.| +++.||...+...
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 99999999999888776554 47788888888888 8999999887753
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.02 E-value=44 Score=38.94 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=114.0
Q ss_pred ccccCCCcchhhHHHHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHH
Q 003608 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (808)
Q Consensus 467 ~~l~~~~~~lr~~a~~~l~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll 545 (808)
..+.++.+-+|+.++..+..+.+-..+.+ .....++...+..+.|.+.=|.+.|..++..+|+.. ++.+ +|.+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--~e~i---l~dL~ 808 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--PEDI---LPDLS 808 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--chhh---HHHHH
Confidence 35667788899999999999876322222 567899999999999999999999999999999874 3333 44555
Q ss_pred HHHHHHhhhhchhh---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHH
Q 003608 546 DEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTIL 622 (808)
Q Consensus 546 ~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li 622 (808)
+.+...-+....+. +-.++..++.+.|+-+..|...+. +.|++... || |. .++.+.+..++.++
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li----~tfl~gvr----ep----d~-~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLI----NTFLSGVR----EP----DH-EFRASSLANLGQLC 875 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHH----HHHHHhcC----Cc----hH-HHHHhHHHHHHHHH
Confidence 54444333332333 456777778888877666666444 34555433 33 22 24556677777777
Q ss_pred HhhcC-ChHHHHHHHhhHHHHHHHHcccChh-hHHHHHHHHHHHhhhcC
Q 003608 623 ESVSR-LPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS 669 (808)
Q Consensus 623 ~~~~~-~~~~~~~~~~~~~p~i~~~l~~~~~-~~~e~~l~ll~~~~~~~ 669 (808)
+...- -++.+ ..+...|-.+...++. -....|..++..+++..
T Consensus 876 q~~a~~vsd~~----~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 876 QLLAFQVSDFF----HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHhhhhhHHH----HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 76531 12222 2222233333334433 44567777777777654
No 115
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.97 E-value=6.8 Score=36.62 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHh-hcCCcchHHHHHHHhhcccccccCC-CcchhhHHHHH
Q 003608 406 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKL-KQTEPYKSELERMLVQHVFPEFSSP-VGHLRAKAAWV 483 (808)
Q Consensus 406 ~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l-~~~~~~~~~l~~~l~~~v~~~l~~~-~~~lr~~a~~~ 483 (808)
+.....-+.+.+++ .++..|-+++.+++...+.. .+. +..+-..|+.. ++..++.+ .+.++..++-+
T Consensus 23 l~~l~~ri~~LL~s--------~~~~~rw~G~~Ll~~~~~~~~~e~--l~~~~~~W~~~-Ll~~L~~~~~~~~~~~ai~~ 91 (165)
T PF08167_consen 23 LHKLVTRINSLLQS--------KSAYSRWAGLCLLKVTVEQCSWEI--LLSHGSQWLRA-LLSILEKPDPPSVLEAAIIT 91 (165)
T ss_pred HHHHHHHHHHHhCC--------CChhhHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHH
Confidence 33444445555553 35677888999999888776 221 22344555543 45556544 45678888888
Q ss_pred HHhhhccccCCh--------hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003608 484 AGQYAHINFSDQ--------NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (808)
Q Consensus 484 l~~~~~~~~~~~--------~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll 552 (808)
++..-...-..+ ..+..+++.+++.+++ ..+...+..+|..++... +..++||...+=..+..++
T Consensus 92 L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~--ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 92 LTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH--PTTFRPFANKIESALLSLL 164 (165)
T ss_pred HHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC--CccccchHHHHHHHHHHHh
Confidence 887643221111 3577788888887765 457789999999999874 7899999988877776654
No 116
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=87.90 E-value=63 Score=38.01 Aligned_cols=389 Identities=11% Similarity=0.029 Sum_probs=184.7
Q ss_pred hhcCHHHHHHHhcccccccCCHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHH
Q 003608 365 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKE--NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGA 442 (808)
Q Consensus 365 w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~--~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~ 442 (808)
+...+..|+.-..| |.+++|-+|.+-+..+...+... +...+.+-+.+... ..+|+.++..--....
T Consensus 274 ~s~v~~~~~~L~~D---dqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~--------d~~~~v~~~~~~~~~~ 342 (759)
T KOG0211|consen 274 KSEVLPTLIQLLRD---DQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVE--------DGSWRVSYMVADKFSE 342 (759)
T ss_pred HhhccHHHhhhhhc---chhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhc--------ChhHHHHHHHhhhhhh
Confidence 34444555443333 34789999999999998887543 22222222222222 2578888877777766
Q ss_pred HHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccC----ChhHHHHHHHHHHhcCCCCCCchHH
Q 003608 443 LCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS----DQNNFRKALHSVVSGLRDPELPVRV 518 (808)
Q Consensus 443 ~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~----~~~~~~~~~~~ll~~l~~~~~~V~~ 518 (808)
++..+.. .....+..+.... .+.+...-.|..+..=.+.+..+. + ..-....+++.+-....|.+..||.
T Consensus 343 L~~~~~~-~~~~~~~~~~~~~----l~~~~~~e~r~a~a~~~~~l~~~l-~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~ 416 (759)
T KOG0211|consen 343 LSSAVGP-SATRTQLVPPVSN----LLKDEEWEVRYAIAKKVQKLACYL-NASCYPNIPDSSILPEVQVLVLDNALHVRS 416 (759)
T ss_pred HHHHhcc-ccCcccchhhHHH----HhcchhhhhhHHhhcchHHHhhhc-CcccccccchhhhhHHHHHHHhcccchHHH
Confidence 6666544 1111121121211 122333334444433334443321 1 1112455577777777888888998
Q ss_pred hHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHH---HHHHHhcc-ccccchHHHHHHHHHHHHHHHH
Q 003608 519 DSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTL---ETIVDKFG-EEMAPYALGLCQNLAAAFWRCM 594 (808)
Q Consensus 519 ~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l---~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~ 594 (808)
+.+.-+............+.+.+|..+.. ++....+.....+ .......+ ..+.-+...+...++. +
T Consensus 417 a~a~~~~~~~p~~~k~~ti~~llp~~~~~----l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e----l- 487 (759)
T KOG0211|consen 417 ALASVITGLSPILPKERTISELLPLLIGN----LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE----L- 487 (759)
T ss_pred HHhccccccCccCCcCcCccccChhhhhh----cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh----h-
Confidence 88776666554432233444444444432 2222111111222 11111111 0111122222222211 1
Q ss_pred hcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCCh
Q 003608 595 NTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISL 674 (808)
Q Consensus 595 ~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p 674 (808)
.+ +..+..+..+++.+..+..-.+. +.+ .+.+.+++..-+.+......+.+..-+..+++.-+ -.=
T Consensus 488 -----~~---d~~wRvr~ail~~ip~la~q~~~--~~~---~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w 553 (759)
T KOG0211|consen 488 -----AE---DLLWRVRLAILEYIPQLALQLGV--EFF---DEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEW 553 (759)
T ss_pred -----cc---chhHHHHHHHHHHHHHHHHhhhh--HHh---hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cch
Confidence 11 01334455666666666554441 111 13344444444444444555666666666654322 111
Q ss_pred hhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHH
Q 003608 675 EMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVF 754 (808)
Q Consensus 675 ~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii 754 (808)
....+-|.++....+++.-+-..++..+..++....+++ +.+.++-.+..+..++.-. -+..|++.+..+.
T Consensus 554 ~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei-------~~~~Llp~~~~l~~D~van--VR~nvak~L~~i~ 624 (759)
T KOG0211|consen 554 ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI-------TCEDLLPVFLDLVKDPVAN--VRINVAKHLPKIL 624 (759)
T ss_pred hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH-------HHHHHhHHHHHhccCCchh--hhhhHHHHHHHHH
Confidence 111222333333222223334445555554444433332 3455555555565443212 2467889998888
Q ss_pred HHcCcCcccchHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHhHhhChHHHHH
Q 003608 755 QNCKGQVDHWVEPYLRITVERLRRA---EKSYLKCLLVQVVSFHERANSDLSII 805 (808)
Q Consensus 755 ~~~~~~~~~~l~~il~~~~~~l~~~---~~~~~~~~~~~~i~~~~~~n~~~~~~ 805 (808)
..+... .....+.-+...|... .-+++....++.+.-+..|.+...-.
T Consensus 625 ~~L~~~---~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d~~~ 675 (759)
T KOG0211|consen 625 KLLDES---VRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSLDVRD 675 (759)
T ss_pred hhcchH---HHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhHHHHH
Confidence 876653 3333333344444332 24556666778888888888876543
No 117
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=87.22 E-value=14 Score=34.10 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhc--CChHHHHHHHHHHHHHHhhh--CC-CCChhHHHHHHHHhchhhHHHHHHHHHHH
Q 003608 88 MVRDHILVFVAQ--VPPLLRVQLGECLKTIIHAD--YP-EQWPHLLDWVKHNLQDQQVYGALFVLRIL 150 (808)
Q Consensus 88 ~ir~~ll~~l~~--~~~~i~~~~~~~i~~Ia~~d--~p-~~Wp~ll~~l~~~l~s~~~~~~L~~L~~i 150 (808)
.||..|+.+|.+ .....-+.++.+++.+|..- ++ +.|++|.+.|.+...+. -..|..++..+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e-~~kA~~IF~~L 69 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENE-PVKAFHIFICL 69 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccc-hHHHHHHHHhC
Confidence 478889999843 33456666777777777644 46 78999999999866443 23454444443
No 118
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.06 E-value=2.3 Score=51.74 Aligned_cols=50 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHH
Q 003608 469 FSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSF 527 (808)
Q Consensus 469 l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~ 527 (808)
|.++++.+|..|.+.+|.... ...++.++..|.|++..||..|+.||..+
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA---------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc---------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 344555566666665554321 12234455555555555666666666553
No 119
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.82 E-value=1.3 Score=27.97 Aligned_cols=29 Identities=10% Similarity=0.340 Sum_probs=21.9
Q ss_pred HHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHH
Q 003608 410 IQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 446 (808)
Q Consensus 410 l~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~ 446 (808)
++.+.+.++. ++|..|+++..++|.+++.
T Consensus 2 lp~l~~~l~D--------~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLND--------PSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT---------SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC--------CCHHHHHHHHHHHHHHHhh
Confidence 3444556553 5899999999999999875
No 120
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.66 E-value=22 Score=38.29 Aligned_cols=164 Identities=12% Similarity=0.174 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHhcCCC-CCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhcccc
Q 003608 496 NNFRKALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEE 574 (808)
Q Consensus 496 ~~~~~~~~~ll~~l~~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~ 574 (808)
+++.+++..+++.|.| .+...+.-|.+.|..+|.+. +..+..+.+..+..+++...+...+....+-+++......
T Consensus 325 q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q--~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las- 401 (516)
T KOG2956|consen 325 QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ--PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS- 401 (516)
T ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc--hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh-
Confidence 5788999999999988 67789999999999999985 7888888888888888877766555444444443333322
Q ss_pred ccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhH
Q 003608 575 MAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEV 654 (808)
Q Consensus 575 i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~ 654 (808)
..|.. .+..++. ++.. .++| ....++.+++.+++.+.. +-+..+.+-+.|.+-...++.+...
T Consensus 402 ~~P~~--~I~~i~~----~Ilt-~D~~--------~~~~~iKm~Tkl~e~l~~--EeL~~ll~diaP~~iqay~S~SS~V 464 (516)
T KOG2956|consen 402 HLPLQ--CIVNISP----LILT-ADEP--------RAVAVIKMLTKLFERLSA--EELLNLLPDIAPCVIQAYDSTSSTV 464 (516)
T ss_pred hCchh--HHHHHhh----HHhc-Ccch--------HHHHHHHHHHHHHhhcCH--HHHHHhhhhhhhHHHHHhcCchHHh
Confidence 22321 1222222 2222 2222 234678899999998863 4455667888888888887766666
Q ss_pred HHHHHHHHHHhhhc-C-CCCChhhhhh
Q 003608 655 FEEVLEIVSYMTFF-S-PTISLEMWSL 679 (808)
Q Consensus 655 ~e~~l~ll~~~~~~-~-~~~~p~l~~~ 679 (808)
.-.+.-++-.+... + +.+.|.+.++
T Consensus 465 RKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 465 RKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred hhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 66666666555442 2 4555554433
No 121
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.09 E-value=8.7 Score=35.66 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc-----CCCcchhhHHH
Q 003608 407 QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-----SPVGHLRAKAA 481 (808)
Q Consensus 407 ~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~-----~~~~~lr~~a~ 481 (808)
+.+++.+.+.+.+. .+|..|..++.++|.++-- .||+ .+.+..... +.+.-......
T Consensus 9 P~LL~~L~~iLk~e-------~s~~iR~E~lr~lGilGAL----DP~~-------~k~~~~~~~~~~~~~~~~~~~~~~l 70 (160)
T PF11865_consen 9 PELLDILLNILKTE-------QSQSIRREALRVLGILGAL----DPYK-------HKSIQKSLDSKSSENSNDESTDISL 70 (160)
T ss_pred HHHHHHHHHHHHhC-------CCHHHHHHHHHHhhhcccc----CcHH-------HhcccccCCccccccccccchhhHH
Confidence 45566666666541 3699999999999987631 1221 111111111 11111222222
Q ss_pred HHHHhhhccccCChh-HHHHHHHHHHhcCCCCCCc-hHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch
Q 003608 482 WVAGQYAHINFSDQN-NFRKALHSVVSGLRDPELP-VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 557 (808)
Q Consensus 482 ~~l~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~-V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~ 557 (808)
... ..+ ...++ +..-++..++..|+|+... -+..++.|+-.++... ...-.||+++++..++..+++.+.
T Consensus 71 ~~~-~~~---~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l--~~~cv~~L~~viP~~l~~i~~~~~ 142 (160)
T PF11865_consen 71 PMM-GIS---PSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL--GLKCVPYLPQVIPIFLRVIRTCPD 142 (160)
T ss_pred hhc-cCC---CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc--CcCchhHHHHHhHHHHHHHHhCCH
Confidence 111 111 11223 4666788888888887654 4557888888888664 344489999999999999987654
No 122
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.49 E-value=2 Score=35.46 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=53.7
Q ss_pred ccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 467 ~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
..+++|.+-+|+.++..+++..+..-........++..+++.|.|++.=|.+.|+.++..+++..
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 35678888899999999999865431123457899999999999999999999999999999874
No 123
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=85.21 E-value=17 Score=37.48 Aligned_cols=159 Identities=13% Similarity=0.151 Sum_probs=84.3
Q ss_pred cchhhHHHHH-HHHHHHHH-HhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhcccc-------CChhHH
Q 003608 428 KPYRQKDGAL-LAIGALCD-KLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF-------SDQNNF 498 (808)
Q Consensus 428 ~~~~~~ea~l-~~lg~~a~-~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~-------~~~~~~ 498 (808)
+.|+...+.. ..+..+.. .. +...+..++ +++...++..+.+..+-.|.++|.++..+-+... +.....
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~-~~~~i~~~~-~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~ 164 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQL-DRPWISQHW-PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLF 164 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcC-CcchHHHhh-hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChH
Confidence 3688777544 44444444 22 222222222 4444444445556789999999999999865321 111234
Q ss_pred HHHHHHHHhcCC--------CCCCchHHhHHHHHHHHHHhcc--cccccccchHHHH-HHHHHHhhhhch---h----hH
Q 003608 499 RKALHSVVSGLR--------DPELPVRVDSVFALRSFVEACR--DLNEIRPILPQLL-DEFFKLMNEVEN---E----DL 560 (808)
Q Consensus 499 ~~~~~~ll~~l~--------~~~~~V~~~A~~al~~~~~~~~--~~~~l~p~l~~ll-~~l~~ll~~~~~---~----~l 560 (808)
.-+.+++..++. ++...+-..|-.|+..++.... ....-...+..++ +.++.-+..... . .+
T Consensus 165 ~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 165 SVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 445555555554 3344455577777777765321 1111122222322 324443333222 2 24
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHH
Q 003608 561 VFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 561 ~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
+..+..++..+|-....|...++..+.+
T Consensus 245 l~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5666777777777777777777766654
No 124
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.61 E-value=21 Score=40.03 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=44.8
Q ss_pred CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 471 SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 471 ~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
+.+.-+|..|+.-+..++.. ++++...+...+.+.|+..++......-.||..++.... +..+...+.+
T Consensus 70 Ded~~iR~~aik~lp~~ck~---~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-k~tL~~lf~~ 138 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKD---NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-KGTLTGLFSQ 138 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T-----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H-HHHHHHHHHH
T ss_pred cccHHHHHHHHHhHHHHHHh---HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 45677899999999888753 457899999999999997777777788889988887652 3344433333
No 125
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=28 Score=40.28 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCC-CCchHHhHHHHHHHHHHhcc-ccccccc--chHHHHHHHHHHhhhhc-hhhHHHHHHHHHHhcc
Q 003608 498 FRKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACR-DLNEIRP--ILPQLLDEFFKLMNEVE-NEDLVFTLETIVDKFG 572 (808)
Q Consensus 498 ~~~~~~~ll~~l~~~-~~~V~~~A~~al~~~~~~~~-~~~~l~p--~l~~ll~~l~~ll~~~~-~~~l~~~l~~iv~~~~ 572 (808)
...+++.++..|++. +.-+...||+||..+|+.+. +...+.. -+|-++++|..+ +=.+ .|..+.+++.|-+.-+
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI-EYIDVAEQSLQALEKISRRHP 287 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 577888888888764 45589999999999999875 2223333 455555555432 1111 1345666666665544
Q ss_pred cc
Q 003608 573 EE 574 (808)
Q Consensus 573 ~~ 574 (808)
..
T Consensus 288 ~A 289 (1051)
T KOG0168|consen 288 KA 289 (1051)
T ss_pred HH
Confidence 33
No 126
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.54 E-value=88 Score=35.71 Aligned_cols=131 Identities=16% Similarity=0.274 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003608 383 LYSPRTASMDFVSELVRKR-GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (808)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~-~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l 461 (808)
+-|.|.-|.++|-.+|+.- -+.++..+++|+.. .+...||-...=++.+++.... || .|.
T Consensus 382 DvSirrravDLLY~mcD~~Nak~IV~elLqYL~t------------Ad~sireeivlKvAILaEKyAt--Dy-----~Wy 442 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLET------------ADYSIREEIVLKVAILAEKYAT--DY-----SWY 442 (938)
T ss_pred chHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh------------cchHHHHHHHHHHHHHHHHhcC--Cc-----chh
Confidence 3678889999999999754 35566666665543 2667777777777777876422 22 233
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch
Q 003608 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL 541 (808)
Q Consensus 462 ~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l 541 (808)
+..+++.+ ...|.| .+++....+++.+++ +.-|+-+||..+-..+.....++.+...-
T Consensus 443 VdviLqLi------------riagd~-----vsdeVW~RvvQiVvN-----nedlq~yaak~~fe~Lq~~a~hE~mVKvg 500 (938)
T KOG1077|consen 443 VDVILQLI------------RIAGDY-----VSDEVWYRVVQIVVN-----NEDLQGYAAKRLFEYLQKPACHENMVKVG 500 (938)
T ss_pred HHHHHHHH------------HHhccc-----ccHHHHHHhheeEec-----chhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 33232221 112222 233444444444332 22377888887776665543455555555
Q ss_pred HHHHHHHHHHhhh
Q 003608 542 PQLLDEFFKLMNE 554 (808)
Q Consensus 542 ~~ll~~l~~ll~~ 554 (808)
.=++..+.+++..
T Consensus 501 gyiLGEfg~LIa~ 513 (938)
T KOG1077|consen 501 GYILGEFGNLIAD 513 (938)
T ss_pred hhhhhhhhhhhcC
Confidence 5555555555543
No 127
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=83.44 E-value=36 Score=37.25 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccc
Q 003608 387 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (808)
Q Consensus 387 r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~ 466 (808)
|....+++..+..++.. .-+.+...+...+.++... .....-..-+|..+|++-.+... |.+.....++.+.++
T Consensus 150 R~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e---~~~~~gI~elLeil~sii~gf~~--plk~eh~~fl~~vll 223 (409)
T PF01603_consen 150 RDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYE---TERHNGIAELLEILGSIINGFAV--PLKEEHKQFLRKVLL 223 (409)
T ss_dssp HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHT---TS--STHHHHHHHHHHHHTT--S--S--HHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC---cccccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHH
Confidence 33444555555544422 1222333333333332211 12455666777788887776532 445566788999999
Q ss_pred ccccCCC-cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHH
Q 003608 467 PEFSSPV-GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (808)
Q Consensus 467 ~~l~~~~-~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll 545 (808)
|....++ +.-...-..|+.+|.+ +++.....++..++.+=--.+..-.+.-..=+..+++.. .++.+.+...++.
T Consensus 224 PLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~-~~~~f~~i~~~lf 299 (409)
T PF01603_consen 224 PLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVL-PPEEFQKIMVPLF 299 (409)
T ss_dssp GGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 9987654 3345566777777765 366788899999998865555555666667777777765 3678888888888
Q ss_pred HHHHHHhhhhchh
Q 003608 546 DEFFKLMNEVENE 558 (808)
Q Consensus 546 ~~l~~ll~~~~~~ 558 (808)
..+..+++.....
T Consensus 300 ~~la~ci~S~h~q 312 (409)
T PF01603_consen 300 KRLAKCISSPHFQ 312 (409)
T ss_dssp HHHHHHHTSSSHH
T ss_pred HHHHHHhCCCCHH
Confidence 8888888765443
No 128
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.93 E-value=11 Score=41.32 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHh--hhcCCCCChhhhhhHHHHHHHh----
Q 003608 614 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM--TFFSPTISLEMWSLWPLMMEAL---- 687 (808)
Q Consensus 614 ~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~--~~~~~~~~p~l~~~~~~l~~~~---- 687 (808)
.++-+..++..+. ++.+..+...++..+..+++.+.....|.|+.+|.+- +..-.. .-..++|.++..+
T Consensus 275 FL~el~~il~~~~--~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~---~~~~i~p~i~~~L~~~~ 349 (409)
T PF01603_consen 275 FLNELEEILEVLP--PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ---NSRVILPIIFPALYRNS 349 (409)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC---THHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh---ChHHHHHHHHHHHHHHH
Confidence 4666666666553 4566778888999999999988889999999988643 211111 1123344444333
Q ss_pred -hhhHHhhhhhhhhhhhhhhccCcccc
Q 003608 688 -ADWAIDFFPNILVPLDNYISRGTAHF 713 (808)
Q Consensus 688 -~~~~~~~~~~~~~~L~~~i~~~~~~~ 713 (808)
..|..........++..+...+++.+
T Consensus 350 ~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 350 KNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp SS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 23444445555556666555555543
No 129
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=82.88 E-value=6.4 Score=33.66 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCC----CCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh-hHHHHHHHHHHhcc-
Q 003608 499 RKALHSVVSGLRD----PELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE-DLVFTLETIVDKFG- 572 (808)
Q Consensus 499 ~~~~~~ll~~l~~----~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~-~l~~~l~~iv~~~~- 572 (808)
-.++..+-..++| .+..-|..|..++..++... .+.+.++.|+++..|-..+...+.. ....+-..++..++
T Consensus 10 Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~--~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 10 LGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLG--GSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCH
Confidence 3444444444444 34457889999999999853 7888888888888777766654333 35677788888876
Q ss_pred ccccchHHHHHHHHHH
Q 003608 573 EEMAPYALGLCQNLAA 588 (808)
Q Consensus 573 ~~i~p~~~~l~~~L~~ 588 (808)
+++.|+.++++..+.+
T Consensus 88 ~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 88 EDLGPLLDQIFAILLP 103 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567776666655554
No 130
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=81.86 E-value=10 Score=32.36 Aligned_cols=89 Identities=15% Similarity=0.210 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCC--Cch--HHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-HHHHHHHHHHhc
Q 003608 497 NFRKALHSVVSGLRDPE--LPV--RVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKF 571 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~--~~V--~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~-l~~~l~~iv~~~ 571 (808)
+.-.+++.+-+.++|.+ .++ |..|..|+..++... ...+.++.|+++-.|-..+...+... ...+-..++..+
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~--g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM--GKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 44556666666666654 444 889999999999964 68888889988888777776544332 566677777777
Q ss_pred cc-cccchHHHHHHHHH
Q 003608 572 GE-EMAPYALGLCQNLA 587 (808)
Q Consensus 572 ~~-~i~p~~~~l~~~L~ 587 (808)
.+ ++.|...+++..+.
T Consensus 86 ~~~~l~~ll~~~~~~i~ 102 (107)
T smart00802 86 KEEELGPLLDQIFAAIL 102 (107)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 53 45555555554444
No 131
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.15 E-value=1.5e+02 Score=37.28 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred cCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhhchhhHHHHHHHHHHHHhHhhChHHH
Q 003608 743 IEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLS 803 (808)
Q Consensus 743 ~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~~~~i~~~~~~n~~~~ 803 (808)
+..|.++++.++...+..++.--++++...+.|+.+. +..+|.-+++.+..|+..||...
T Consensus 276 Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 276 RLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhh
Confidence 5678889888888866666677788888898888854 47788899999999999998753
No 132
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.52 E-value=19 Score=34.67 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHH----
Q 003608 557 NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLF---- 632 (808)
Q Consensus 557 ~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~---- 632 (808)
.+.+..+++++.++++..-.|++..++..+.+ .-+ ..+ . -.+..+=++++..++++|. +.+
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~----lr~-~~~-f-------~~~~~~e~~lgaAi~amGp--e~vL~~l 81 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGD----LRE-SED-F-------SFRKELEQVLGAAIRAMGP--EQVLSIL 81 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH----HHc-CCC-c-------chHHHHHHHHHHHHHHCCH--HHHHHHC
Confidence 35688888999999988877887777777664 222 111 0 1233456677777777762 111
Q ss_pred ----------HHHHhhHHHHHHHHcccC-hhhHHHHHHHHHHHh
Q 003608 633 ----------VQIEPTLLPIMRRMLTTD-GQEVFEEVLEIVSYM 665 (808)
Q Consensus 633 ----------~~~~~~~~p~i~~~l~~~-~~~~~e~~l~ll~~~ 665 (808)
..-..-++|++...+.+. -..|.++.+-+...+
T Consensus 82 PLnl~~~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~ 125 (198)
T PF08161_consen 82 PLNLDNADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRL 125 (198)
T ss_pred CCCccCCCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 111234788888877653 335556655554443
No 133
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=80.08 E-value=1.9 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCCCchHHhHHHHHHHHH
Q 003608 500 KALHSVVSGLRDPELPVRVDSVFALRSFV 528 (808)
Q Consensus 500 ~~~~~ll~~l~~~~~~V~~~A~~al~~~~ 528 (808)
..++.+++.|.+++..|+..|+.||.+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46888889999888899999999999876
No 134
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=79.91 E-value=1.2e+02 Score=34.70 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=94.9
Q ss_pred ccCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCc----chHHH
Q 003608 382 DLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP----YKSEL 457 (808)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~----~~~~l 457 (808)
|...||..+ .++..+++-.+.-++...-. +.+.+.+ .....|-+.+-++|.+..+..+... |+..+
T Consensus 275 d~~Gpk~is-lFl~kls~l~p~i~lrq~~~-~~~LLds--------es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~ 344 (1128)
T COG5098 275 DLSGPKDIS-LFLNKLSELSPGIMLRQYEH-FDELLDS--------ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKL 344 (1128)
T ss_pred cccChHHHH-HHHHHHhhcCchHHHHHHHH-HHHHhcc--------cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHH
Confidence 345566544 46666776666544443332 3345543 5788999999999999888765432 22233
Q ss_pred HHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 458 ERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 458 ~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
.. |...+...|.+.+|+.|..|+.++.+..+...+-+.....+...+..+++|...+||--|..-+..++-.
T Consensus 345 ~~-Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 345 ND-LVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred HH-HHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 22 3333444567889999999999999887644333445688999999999999999999999988888754
No 135
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.64 E-value=9.7 Score=41.66 Aligned_cols=115 Identities=20% Similarity=0.250 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~ 508 (808)
|=-.|.||..++|.++- .+ . ..+...|-+.-.+.++.+|+.....+|-++.-. -. ......+-..
T Consensus 565 nDDVrRAAViAlGfvc~--~D-~-------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~--G~---~~a~diL~~L 629 (926)
T COG5116 565 NDDVRRAAVIALGFVCC--DD-R-------DLLVGTVELLSESHNFHVRAGVAVALGIACAGT--GD---KVATDILEAL 629 (926)
T ss_pred chHHHHHHHHheeeeEe--cC-c-------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCC--cc---HHHHHHHHHH
Confidence 44678888888887642 22 1 112222322333567899999999999886532 11 2233333334
Q ss_pred CCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhH
Q 003608 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDL 560 (808)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l 560 (808)
+.|+..-||-.|+.|+.-++-.+ .+.+.|....|.+++.+++.+-..+.+
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~Q~--n~~Lnp~v~~I~k~f~~vI~~Khe~gl 679 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILMQC--NPELNPNVKRIIKKFNRVIVDKHESGL 679 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHhhc--CcccChhHHHHHHHHHHHHhhhhHhHH
Confidence 46777789999999999998886 688999999999999999886544433
No 136
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=78.69 E-value=1.3e+02 Score=34.67 Aligned_cols=78 Identities=13% Similarity=0.290 Sum_probs=58.2
Q ss_pred CchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhccccccchHHHHHHHHHHHH
Q 003608 514 LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYALGLCQNLAAAF 590 (808)
Q Consensus 514 ~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~ 590 (808)
..+|......+.+++.-. .+.+.||+|.+++.++. ..+..+ .+..++.++..|+..+.|...++...|....
T Consensus 711 E~iRsavrft~hRmI~~l--g~~vlPfipklie~lL~---s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 711 ENIRSAVRFTFHRMIPIL--GNKVLPFIPKLIELLLS---STDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred chhHHHHHHHHHHHHHhc--chhhhcchHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888999998875 68899999999997664 444444 5566788888999888888887777776654
Q ss_pred HHHHhc
Q 003608 591 WRCMNT 596 (808)
Q Consensus 591 ~~~~~~ 596 (808)
..++.+
T Consensus 786 fsvi~r 791 (980)
T KOG2021|consen 786 FSVIER 791 (980)
T ss_pred HHHhcc
Confidence 455543
No 137
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.86 E-value=1.4e+02 Score=34.65 Aligned_cols=137 Identities=15% Similarity=0.256 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcc
Q 003608 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHV 465 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v 465 (808)
-|..|..-|+.++++|...+...=+.-+.+.|+. +...-|+.=+++-.+.--+... +
T Consensus 39 DRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~---------D~~D~E~ik~~LdTl~il~~~d-d------------- 95 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQR---------DYMDPEIIKYALDTLLILTSHD-D------------- 95 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhh---------ccCCHHHHHHHHHHHHHHHhcC-c-------------
Confidence 4677888899999998765543333333334443 3334444444444433322211 1
Q ss_pred cccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccc---cchH
Q 003608 466 FPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR---PILP 542 (808)
Q Consensus 466 ~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~---p~l~ 542 (808)
.|+.-+.....---..|+.-+|- +++ ..+..+++.+..-+..||.+|..-+..++... +..++ --.|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fi----k~q----d~I~lll~~~e~~DF~VR~~aIqLlsalls~r--~~e~q~~ll~~P 165 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFI----KNQ----DNITLLLQSLEEFDFHVRLYAIQLLSALLSCR--PTELQDALLVSP 165 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHH----cCc----hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC--CHHHHHHHHHCc
Confidence 01111111122233455554443 233 34566677776678889999999999999875 33333 2457
Q ss_pred HHHHHHHHHhhhh
Q 003608 543 QLLDEFFKLMNEV 555 (808)
Q Consensus 543 ~ll~~l~~ll~~~ 555 (808)
.-+..++.++...
T Consensus 166 ~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 166 MGISKLMDLLRDS 178 (970)
T ss_pred hhHHHHHHHHhhh
Confidence 7778888777653
No 138
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.58 E-value=3.6 Score=50.14 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=55.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
.+|..|.++..+||.+... + -+ + .+.+.|.++++.||..|.+.||++.. + ....+.+..
T Consensus 819 ~d~~VR~~Aa~aL~~l~~~--~------a~-~----~L~~~L~D~~~~VR~~A~~aL~~~~~----~----~~a~~~L~~ 877 (897)
T PRK13800 819 SAWQVRQGAARALAGAAAD--V------AV-P----ALVEALTDPHLDVRKAAVLALTRWPG----D----PAARDALTT 877 (897)
T ss_pred CChHHHHHHHHHHHhcccc--c------hH-H----HHHHHhcCCCHHHHHHHHHHHhccCC----C----HHHHHHHHH
Confidence 4788888888888765321 0 11 1 23345678999999999999999621 2 234556667
Q ss_pred cCCCCCCchHHhHHHHHHH
Q 003608 508 GLRDPELPVRVDSVFALRS 526 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~ 526 (808)
.++|++..||..|+.||..
T Consensus 878 al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 878 ALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhCCCHHHHHHHHHHHhh
Confidence 7788899999999999863
No 139
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=77.24 E-value=66 Score=30.52 Aligned_cols=122 Identities=17% Similarity=0.293 Sum_probs=66.0
Q ss_pred CCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchHHHHHHHHHH
Q 003608 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
+.|+++.||..|+.++..+++.. ++|+.. ..+.+ .=...++|+...+...+.+
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gs------k~~L~~--------Ae~~~-------------~~~~sFtslS~tLa~~i~~ 101 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGS------KPFLAQ--------AEESK-------------GPSGSFTSLSSTLASMIME 101 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHcc------HHHHHH--------HHhcC-------------CCCCCcccHHHHHHHHHHH
Confidence 46899999999999999999874 233222 11111 0012456665555554443
Q ss_pred ---HHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcC---ChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHH
Q 003608 589 ---AFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR---LPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIV 662 (808)
Q Consensus 589 ---~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~---~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll 662 (808)
.+...++. +.+ .-....++.|++.++.+... .++....+...+.|. +.+.+.+....++..+
T Consensus 102 lH~~Ll~~L~~-E~~-------~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~----l~~~d~~v~v~~l~~~ 169 (182)
T PF13251_consen 102 LHRGLLLALQA-EKS-------PPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPL----LRHRDPNVRVAALSCL 169 (182)
T ss_pred HHHHHHHHHhc-ccc-------cHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHH----HhcCCCcHHHHHHHHH
Confidence 22222322 111 12334788888888877532 233333333333333 3334556666777777
Q ss_pred HHhhhcC
Q 003608 663 SYMTFFS 669 (808)
Q Consensus 663 ~~~~~~~ 669 (808)
+.++...
T Consensus 170 ~~l~s~~ 176 (182)
T PF13251_consen 170 GALLSVQ 176 (182)
T ss_pred HHHHcCC
Confidence 7776544
No 140
>PF05536 Neurochondrin: Neurochondrin
Probab=76.69 E-value=1.4e+02 Score=33.96 Aligned_cols=150 Identities=10% Similarity=0.114 Sum_probs=87.3
Q ss_pred hHHHHHHHHcccChh-hHHHHHHHHHHHhhhcCCCCChhhh--hhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCccccc
Q 003608 638 TLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL 714 (808)
Q Consensus 638 ~~~p~i~~~l~~~~~-~~~e~~l~ll~~~~~~~~~~~p~l~--~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l 714 (808)
.-+|.+..++..... ...+++++++..+..+. .-...+. ...+.+.+.+.+ ........+.++.+.+........
T Consensus 98 ~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~ 175 (543)
T PF05536_consen 98 SRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSW 175 (543)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhh
Confidence 356888888876655 89999999999998432 2222233 245556665533 222345556666665554443333
Q ss_pred ccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCc---C---cccchHHHHHHHHHHHhhchhhHHHHHH
Q 003608 715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG---Q---VDHWVEPYLRITVERLRRAEKSYLKCLL 788 (808)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~---~---~~~~l~~il~~~~~~l~~~~~~~~~~~~ 788 (808)
+ .+...+..+..-+.+.+... .+.++..++.++..++...+. . -..+++.+...+-.-+++..++.-|...
T Consensus 176 ~-~~~~~l~~il~~La~~fs~~--~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 176 A-EDSQLLHSILPSLARDFSSF--HGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred h-hhHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 3 23345556666666666432 333345678888888888742 1 1236666666666666665556666555
Q ss_pred HHHH
Q 003608 789 VQVV 792 (808)
Q Consensus 789 ~~~i 792 (808)
+...
T Consensus 253 l~La 256 (543)
T PF05536_consen 253 LNLA 256 (543)
T ss_pred HHHH
Confidence 4443
No 141
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=76.54 E-value=4.6 Score=41.11 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCcch--HHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccc--cCChhHHHHHHHHH
Q 003608 430 YRQKDGALLAIGALCDKLKQTEPYK--SELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN--FSDQNNFRKALHSV 505 (808)
Q Consensus 430 ~~~~ea~l~~lg~~a~~l~~~~~~~--~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~--~~~~~~~~~~~~~l 505 (808)
-..-||+ +++..++.+-+...... ..-.+++.+ .|.+++.-+|-.+.|.+|..+.-. .++.-.--.+++-+
T Consensus 130 mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiq----lL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galepl 204 (526)
T COG5064 130 MLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQ----LLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL 204 (526)
T ss_pred HHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHH----HHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHH
Confidence 3444554 47777777654321110 011122322 345677889999999999986521 12221122334445
Q ss_pred HhcCCCCC--CchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHH
Q 003608 506 VSGLRDPE--LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTL 564 (808)
Q Consensus 506 l~~l~~~~--~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l 564 (808)
+..+.++. ...--.|.++|.++|+..+.++.. ..+.+.++.|.+++...+.+.++.+.
T Consensus 205 L~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w-~~isqalpiL~KLiys~D~evlvDA~ 264 (526)
T COG5064 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW-SNISQALPILAKLIYSRDPEVLVDAC 264 (526)
T ss_pred HHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch-HHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 55554432 334458999999999887533332 45677888888888887777666553
No 142
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=76.18 E-value=1.7e+02 Score=34.45 Aligned_cols=248 Identities=14% Similarity=0.137 Sum_probs=115.3
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccc----ccccCCCcchhhHHHHHHHhhhccc-cCChhHHHHHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF----PEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALH 503 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~----~~l~~~~~~lr~~a~~~l~~~~~~~-~~~~~~~~~~~~ 503 (808)
+-...+.++.++..++..-. ... .++..-++ +.+.++ -.+.-++.++...+... .+.--.....++
T Consensus 344 ~~~l~~~aLrlL~NLSfd~~----~R~---~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSFDPE----LRS---QMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIP 414 (708)
T ss_pred CHHHHHHHHHHHHHhCcCHH----HHH---HHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence 45678888888888774311 111 11111122 233333 23333444444443211 011001123455
Q ss_pred HHHhcCC-CCCCchHHhHHHHHHHHHHhcccccccc--cchHHHHHHHHHHhhhhchhhHHHHHHHHHHhcc---ccccc
Q 003608 504 SVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIR--PILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG---EEMAP 577 (808)
Q Consensus 504 ~ll~~l~-~~~~~V~~~A~~al~~~~~~~~~~~~l~--p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~---~~i~p 577 (808)
.+++.+. .++..+...+...+.++..+....+.+. .-++.++...+ +....-++.++..+...=+ ..+.+
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~----~~~D~lLlKlIRNiS~h~~~~k~~f~~ 490 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRAL----KTRDPLLLKLIRNISQHDGPLKELFVD 490 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHH----hcccHHHHHHHHHHHhcCchHHHHHHH
Confidence 5555543 3555566666666666655432112222 22344444332 2222335666666654432 12333
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHH-HhhHHHHHHHHcccCh--hhH
Q 003608 578 YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDG--QEV 654 (808)
Q Consensus 578 ~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~-~~~~~p~i~~~l~~~~--~~~ 654 (808)
|..+++. .+...+ ++ + ..++|++.+...--.+.....-+ +..++|.+...+.+.. .+.
T Consensus 491 ~i~~L~~--------~v~~~~-~e----e------~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl 551 (708)
T PF05804_consen 491 FIGDLAK--------IVSSGD-SE----E------FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDL 551 (708)
T ss_pred HHHHHHH--------HhhcCC-cH----H------HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHH
Confidence 4433332 332211 11 1 34666665544322222211222 2479999999998642 367
Q ss_pred HHHHHHHHHHhhhcCCCCChhhh--hhHHHHHHHhh--hhHHhhhhhhhhhhhhhhccC
Q 003608 655 FEEVLEIVSYMTFFSPTISLEMW--SLWPLMMEALA--DWAIDFFPNILVPLDNYISRG 709 (808)
Q Consensus 655 ~e~~l~ll~~~~~~~~~~~p~l~--~~~~~l~~~~~--~~~~~~~~~~~~~L~~~i~~~ 709 (808)
.-++..+++.+.... ...+.+- .+.+.+.+++. +.+.+++-+++-++..++.++
T Consensus 552 ~LE~Vi~~gtla~d~-~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~ 609 (708)
T PF05804_consen 552 LLEVVILLGTLASDP-ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE 609 (708)
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh
Confidence 777777777665321 1111111 34555555553 235566666677777777664
No 143
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.32 E-value=1.6e+02 Score=33.81 Aligned_cols=144 Identities=17% Similarity=0.267 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcC
Q 003608 430 YRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL 509 (808)
Q Consensus 430 ~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l 509 (808)
-..+.|.++-.-.++-++...+.. +..- .+.+...+.+..+-+|+-|+-...+.+...|. .+....-...+++.|
T Consensus 303 ~na~naVLFeaI~l~~h~D~e~~l---l~~~-~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h~d~Ii~sL 377 (938)
T KOG1077|consen 303 SNAKNAVLFEAISLAIHLDSEPEL---LSRA-VNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKHQDTIINSL 377 (938)
T ss_pred hhhHHHHHHHHHHHHHHcCCcHHH---HHHH-HHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHHHHHHHHHh
Confidence 346777777666666665443221 1111 11222334456677888888877777665443 234455577888888
Q ss_pred C-CCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch---hhHHHHHHHHHHhccccccchHHHHHHH
Q 003608 510 R-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN---EDLVFTLETIVDKFGEEMAPYALGLCQN 585 (808)
Q Consensus 510 ~-~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~---~~l~~~l~~iv~~~~~~i~p~~~~l~~~ 585 (808)
+ +.|..||-.|..-|-.+|+.. ....|++.+++.+.+++. +++..-+.-+.+.|..+..=|..-+.+.
T Consensus 378 kterDvSirrravDLLY~mcD~~--------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqL 449 (938)
T KOG1077|consen 378 KTERDVSIRRRAVDLLYAMCDVS--------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQL 449 (938)
T ss_pred ccccchHHHHHHHHHHHHHhchh--------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 7 788899999999999999874 356777778888777654 3455555666778877776666655544
Q ss_pred H
Q 003608 586 L 586 (808)
Q Consensus 586 L 586 (808)
+
T Consensus 450 i 450 (938)
T KOG1077|consen 450 I 450 (938)
T ss_pred H
Confidence 3
No 144
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=75.25 E-value=1.4e+02 Score=33.23 Aligned_cols=343 Identities=15% Similarity=0.136 Sum_probs=170.4
Q ss_pred hhcccCChhhHhhhhcCHHHHHHHhc-----ccccccCCHHHH---HHHHHHHHHHhcc-cchHHHHHHHHHHHhcccCC
Q 003608 352 FPLMCFNDNDQKLWDEDPHEYVRKGY-----DIIEDLYSPRTA---SMDFVSELVRKRG-KENLQKFIQFIVGIFKRYDE 422 (808)
Q Consensus 352 ~~~l~l~~~d~e~w~~Dp~efv~~~~-----d~~~d~~s~r~~---a~~ll~~l~~~~~-~~~~~~il~~i~~~l~~~~~ 422 (808)
.+.++.+......|.++.+|-+-+-- .+. ..|.|... -...+.-+..... +.+. +.-+.+.+...
T Consensus 162 YhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n-~gy~Pn~~~isqYHalGlLyq~kr~dkma---~lklv~hf~~n-- 235 (898)
T COG5240 162 YHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGN-EGYEPNGNPISQYHALGLLYQSKRTDKMA---QLKLVEHFRGN-- 235 (898)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhHhhCcCccCC-cccCCCCChHHHHHHHHHHHHHhcccHHH---HHHHHHHhhcc--
Confidence 46667788888899887776554311 111 12333221 1222333333221 2221 11222333321
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHH
Q 003608 423 TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKAL 502 (808)
Q Consensus 423 ~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~ 502 (808)
..-+..-|....+..+.+.+.+...+..++.+||... +.+....+.--+...+..+++-.. .+++..+.+
T Consensus 236 -----~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~w----ls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~~~v 305 (898)
T COG5240 236 -----ASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSW----LSDKFEMVFLEAARAVCALSEENV-GSQFVDQTV 305 (898)
T ss_pred -----cccccchhheehHHHHHHHHHhChHHHHHHHHHHHHH----hcCcchhhhHHHHHHHHHHHHhcc-CHHHHHHHH
Confidence 1234445666677777777776665566666666553 333333444444444444544221 346778888
Q ss_pred HHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccc---cchHHHHH---------HHHHHhhhhchh---hHHHHHHHH
Q 003608 503 HSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIR---PILPQLLD---------EFFKLMNEVENE---DLVFTLETI 567 (808)
Q Consensus 503 ~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~---p~l~~ll~---------~l~~ll~~~~~~---~l~~~l~~i 567 (808)
..+-..|.++..+.|-+|.+.|.++.-..+ +.+. +-++.++. .+..+++....+ .++..+-++
T Consensus 306 s~L~~fL~s~rv~~rFsA~Riln~lam~~P--~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sf 383 (898)
T COG5240 306 SSLRTFLKSTRVVLRFSAMRILNQLAMKYP--QKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSF 383 (898)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhCC--ceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 888888888888899999999999876532 2111 22222222 123334433333 355556666
Q ss_pred HHhccccccchHHHHHHHHHHHHHHHHh-------cccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHH
Q 003608 568 VDKFGEEMAPYALGLCQNLAAAFWRCMN-------TAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLL 640 (808)
Q Consensus 568 v~~~~~~i~p~~~~l~~~L~~~~~~~~~-------~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~ 640 (808)
+.-+++.+.-.+.+-+..|.--|-+-|. ..-.++ + ..-+..++.++|+++++...+..+.. -+.+.
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e---G-g~eFK~~~Vdaisd~~~~~p~skEra---Le~LC 456 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE---G-GLEFKKYMVDAISDAMENDPDSKERA---LEVLC 456 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc---c-cchHHHHHHHHHHHHHhhCchHHHHH---HHHHH
Confidence 6666676665555555555432222111 111111 1 12245567777777776654333211 12222
Q ss_pred HHHHHHcccChhhHHHHHHHHHHHhhhcCCC-CChh--hhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccC
Q 003608 641 PIMRRMLTTDGQEVFEEVLEIVSYMTFFSPT-ISLE--MWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCK 717 (808)
Q Consensus 641 p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~-~~p~--l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~ 717 (808)
..|+. .+|-+-+..+++.+=+-.|. -.|. +..++.+++ +++ .-.....+.+|.-|.....+.++
T Consensus 457 ~fIED------cey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--LEN--~ivRsaAv~aLskf~ln~~d~~~--- 523 (898)
T COG5240 457 TFIED------CEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--LEN--NIVRSAAVQALSKFALNISDVVS--- 523 (898)
T ss_pred HHHhh------cchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--Hhh--hHHHHHHHHHHHHhccCcccccc---
Confidence 22222 24555566666666553322 2333 344554432 111 11334455566666555555444
Q ss_pred CchHHHHHHHHHHHHhcCC
Q 003608 718 EPDYQQSLWSMVSSIMADK 736 (808)
Q Consensus 718 ~~~~~~~l~~~~~~~l~~~ 736 (808)
-+.+-.++.+++++.
T Consensus 524 ----~~sv~~~lkRclnD~ 538 (898)
T COG5240 524 ----PQSVENALKRCLNDQ 538 (898)
T ss_pred ----HHHHHHHHHHHhhcc
Confidence 456666777777643
No 145
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.17 E-value=60 Score=34.02 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003608 35 PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKT 114 (808)
Q Consensus 35 p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~ 114 (808)
+++...+++++..-+.+.++.+.....+-..+...=...+-. ...........=..++..+..+|..|+.+.+.+++.
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~--~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELF--LELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHH--HHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHH--HHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 467777778777653578888888888888776543221000 000010111133456666677899999999999999
Q ss_pred HHhhhCCCCCh---hHHHHHHHHhchh-------hHHHHHHHHHHHHHHcccCCcCCcchHHHHHHHHhHHHHHHHHHHh
Q 003608 115 IIHADYPEQWP---HLLDWVKHNLQDQ-------QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLV 184 (808)
Q Consensus 115 Ia~~d~p~~Wp---~ll~~l~~~l~s~-------~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 184 (808)
++...-+..=. +.++.+++++.+. .+..++.+|..+.+. ++.|..+-. ....+.+.+++....
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-----~~~R~~f~~--~~~v~~l~~iL~~~~ 204 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-----KEYRQVFWK--SNGVSPLFDILRKQA 204 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-----HHHHHHHHT--HHHHHHHHHHHH---
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-----chhHHHHHh--cCcHHHHHHHHHhhc
Confidence 99987554444 7888888888753 247888999888853 222222211 334455555443211
Q ss_pred cccCCChhHHHHHHHHHHHhHHhh
Q 003608 185 QIVNPSLEVADLIKLICKIFWSSI 208 (808)
Q Consensus 185 ~~~~~~~~~~~~~~~~lk~~~~~~ 208 (808)
... +.....++..++-|++-++
T Consensus 205 ~~~--~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 205 TNS--NSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp --------HHHHHHHHHHHHHHHT
T ss_pred ccC--CCCchhHHHHHHHHHHHHh
Confidence 111 1224566777777877654
No 146
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=74.97 E-value=26 Score=29.91 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHccc--ChhhHHHHHHHHHHHhhhcCC
Q 003608 611 AVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT--DGQEVFEEVLEIVSYMTFFSP 670 (808)
Q Consensus 611 ~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~--~~~~~~e~~l~ll~~~~~~~~ 670 (808)
+...+..+..+++..++ .. ..+.|-|..+++. +..++.+.+++.|..++++.+
T Consensus 32 k~~~l~si~~lI~~~~~---~i----~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 32 KKRALRSIEELIKLGGS---HI----SSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHHHHHHHhHH---HH----HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 34678888888884332 22 3444555555542 334899999999999997653
No 147
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=74.22 E-value=1e+02 Score=32.67 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=52.9
Q ss_pred CcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003608 473 VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (808)
Q Consensus 473 ~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll 552 (808)
..--++-|..++++|-.+ -|+.....+.+-+.+..|.+..||.+|.+-|-.||.. ..++.+.+.|.+++
T Consensus 37 ~~k~k~lasq~ip~~fk~---fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--------d~~~rv~d~l~qLL 105 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKH---FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--------DALSRVNDVLVQLL 105 (460)
T ss_pred chHHHHHHHHHHHHHHhh---CchhhhHHHHhhhccccccchhhHHHHHhccchhccC--------chhhhhHHHHHHHH
Confidence 345567778888888654 2467788899999999999999999999999999865 23445555555556
Q ss_pred hhh
Q 003608 553 NEV 555 (808)
Q Consensus 553 ~~~ 555 (808)
+..
T Consensus 106 nk~ 108 (460)
T KOG2213|consen 106 NKA 108 (460)
T ss_pred HHH
Confidence 543
No 148
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.98 E-value=1e+02 Score=35.59 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=66.9
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchH
Q 003608 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (808)
Q Consensus 463 ~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~ 542 (808)
+.++-+..+++|.+|+-|+...|... -+.....+..-+..+++|.++.||..|+.....+.... .+... -.
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l~-----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~~~~--~~ 159 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCLR-----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PDLVE--DS 159 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeEe-----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--hhhcc--cc
Confidence 44555677899999999998887643 22456778888899999999999999999999887654 22222 23
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHHHHH
Q 003608 543 QLLDEFFKLMNEVENEDLVFTLETIVD 569 (808)
Q Consensus 543 ~ll~~l~~ll~~~~~~~l~~~l~~iv~ 569 (808)
.+++.|-.++...+...+..++.++.+
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 445555555554444445566655543
No 149
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=73.65 E-value=17 Score=38.14 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHccc---Ch-hhHHHHHHHHHHHhhhcC-CCCChhhhhhHHHHHHH-
Q 003608 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTT---DG-QEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEA- 686 (808)
Q Consensus 613 ~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~---~~-~~~~e~~l~ll~~~~~~~-~~~~p~l~~~~~~l~~~- 686 (808)
.++..+.+.++...+...+.. ..+-|++..++.. .. ..-..+++.+++.++... ..+.|.+..++..++++
T Consensus 46 eIL~Li~t~i~~~~~~~~v~~---~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 46 EILKLIETFISKAEDPEEVAN---NFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHT-S-HHHHHH---HTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 456666666666543333333 2233444445432 12 233468888888888753 33455555555555444
Q ss_pred ---hhhh---HHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCc-
Q 003608 687 ---LADW---AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG- 759 (808)
Q Consensus 687 ---~~~~---~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~- 759 (808)
+.++ -.+........|.+.+....+.+++ -+++....+++.+.-.+.+...+. ...+..++..++.++..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~-lp~~~f~~~idsi~wg~kh~~~~I--~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQ-LPPEQFKLVIDSIVWGFKHTNREI--SETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHH-S-HHHHHHHHHHHHHHHTSSSHHH--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHHHHHhc
Confidence 3332 2334556667777777776666663 234556666666666665443222 24577778888877665
Q ss_pred --C-ccc----chHHHHHHHHHHHhhc
Q 003608 760 --Q-VDH----WVEPYLRITVERLRRA 779 (808)
Q Consensus 760 --~-~~~----~l~~il~~~~~~l~~~ 779 (808)
+ ... |.-.++..++..+.+.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 1 223 3344455555555543
No 150
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.56 E-value=20 Score=36.43 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
|-....+.+.+..+....++.+.+.+...|..+..+.. + ..-....+++.+++-+...+.+. +...++..+..
T Consensus 102 W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslK-N----lRS~VsraA~~t~~difs~ln~~--i~~~ld~lv~~ 174 (334)
T KOG2933|consen 102 WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLK-N----LRSAVSRAACMTLADIFSSLNNS--IDQELDDLVTQ 174 (334)
T ss_pred HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc-C----hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 44566677888888776655444444445555544422 1 23346667777777777665442 11233333322
Q ss_pred cccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
++---...+.|+|..|-..+-...... . ...+++.+..+++..++.++..|+.++.++...
T Consensus 175 -Ll~ka~~dnrFvreda~kAL~aMV~~v--t---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r 235 (334)
T KOG2933|consen 175 -LLHKASQDNRFVREDAEKALVAMVNHV--T---PQKLLRKLIPILQHSNPRVRAKAALCFSRCVIR 235 (334)
T ss_pred -HHhhhcccchHHHHHHHHHHHHHHhcc--C---hHHHHHHHHHHHhhhchhhhhhhhcccccccee
Confidence 110111346899999988887765533 2 366777777778878888998888877766543
No 151
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=73.15 E-value=93 Score=31.69 Aligned_cols=152 Identities=12% Similarity=0.165 Sum_probs=79.3
Q ss_pred HhhHHHHHHHHcccChhhHHHHHHHHHHHhhhc------CCCCChhhhhhHHHHHHHhhhh-----HHhhhhhhhhhhhh
Q 003608 636 EPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF------SPTISLEMWSLWPLMMEALADW-----AIDFFPNILVPLDN 704 (808)
Q Consensus 636 ~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~------~~~~~p~l~~~~~~l~~~~~~~-----~~~~~~~~~~~L~~ 704 (808)
..-++|++... .+.......++.++-.++.- ..+-++.-+..++.+.+.+.+. +...+..++..+..
T Consensus 43 ~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~ 120 (266)
T PF04821_consen 43 QKDLIPILISY--KDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLP 120 (266)
T ss_pred hhhHHHHHHhc--cCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhH
Confidence 35688877766 33567888888888877641 1112333445555555444321 12344444444444
Q ss_pred hhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCcc--CchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhhchhh
Q 003608 705 YISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI--EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKS 782 (808)
Q Consensus 705 ~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~--~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~~~ 782 (808)
.+...... .+..+...++.++..+.++|.-+....... ..-..+-..++.++..+ .++..++.-.++....
T Consensus 121 ~l~~~~~~-rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~------~v~~lLL~l~s~~~~~ 193 (266)
T PF04821_consen 121 PLEKDWED-RTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFES------GVLDLLLTLASSPQES 193 (266)
T ss_pred Hhhccccc-CCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHc------CHHHHHHHHHhCcccc
Confidence 44433322 111334679999999999997543222111 12334555555554332 3344444444444334
Q ss_pred HHHHHHHHHHHHhH
Q 003608 783 YLKCLLVQVVSFHE 796 (808)
Q Consensus 783 ~~~~~~~~~i~~~~ 796 (808)
.|...++|+|...+
T Consensus 194 ~f~~~lLEIi~ll~ 207 (266)
T PF04821_consen 194 DFNLLLLEIIYLLF 207 (266)
T ss_pred chhhHHHHHHHHHH
Confidence 56667777776544
No 152
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.04 E-value=2.1e+02 Score=34.19 Aligned_cols=128 Identities=7% Similarity=-0.075 Sum_probs=72.3
Q ss_pred CCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHH----HHHHHh-cCCCCCCCcc
Q 003608 669 SPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWS----MVSSIM-ADKNLEDGDI 743 (808)
Q Consensus 669 ~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~----~~~~~l-~~~~~~~~~~ 743 (808)
...+-|.+.+.+|.++.++...+.-.+.-++.+++....+..+.+.. .+++.++- .|.... .....+-...
T Consensus 838 ~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~s----R~l~dvlP~l~~~~~~~~~~~~~~~~~~q 913 (1014)
T KOG4524|consen 838 HNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVAS----RFLEDVLPWLKHLCQDSFARTILKELRIQ 913 (1014)
T ss_pred chhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 35667888899999999987777777888889999888887764432 33333322 222222 0111122223
Q ss_pred CchhHHHHHHHHHcCcC------cccchHHHHHHHHHHHhhchhhHHHHHHHHHHHHhHhhCh
Q 003608 744 EPAPKLIEVVFQNCKGQ------VDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANS 800 (808)
Q Consensus 744 ~~a~~ll~~ii~~~~~~------~~~~l~~il~~~~~~l~~~~~~~~~~~~~~~i~~~~~~n~ 800 (808)
....++=-.++.+.+.= ....++.|...+.=.+...-...+...+...+...+.|++
T Consensus 914 ta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~~s~F~~~V~~ek 976 (1014)
T KOG4524|consen 914 TAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIARSCFLDLVPVEK 976 (1014)
T ss_pred HHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHHHHHHHHHhccCC
Confidence 45677777777775531 1122444444444444333233344444555556677776
No 153
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.67 E-value=35 Score=38.90 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=77.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
.+...|.++++.++...-+ +..+ .-+..+| ++ ..++.+-=+|+.|...+|- +.|++++.+..+++.+..
T Consensus 531 kdpilR~~Gm~t~alAy~G-Tgnn---kair~lL-h~---aVsD~nDDVrRaAVialGF---Vl~~dp~~~~s~V~lLse 599 (929)
T KOG2062|consen 531 KDPILRYGGMYTLALAYVG-TGNN---KAIRRLL-HV---AVSDVNDDVRRAAVIALGF---VLFRDPEQLPSTVSLLSE 599 (929)
T ss_pred CchhhhhhhHHHHHHHHhc-cCch---hhHHHhh-cc---cccccchHHHHHHHHHhee---eEecChhhchHHHHHHhh
Confidence 4778888888888764333 2221 1222322 11 2345667788888888876 456677766666655543
Q ss_pred cCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh-ch--hhHHHHHHHHHHhccccccchHHHHHH
Q 003608 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV-EN--EDLVFTLETIVDKFGEEMAPYALGLCQ 584 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~-~~--~~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (808)
. -++.||..|+.||.-.|..-... ..+.-|-.+.+.. +. ...+-++.-|.....+...|-...+-+
T Consensus 600 s---~N~HVRyGaA~ALGIaCAGtG~~--------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 600 S---YNPHVRYGAAMALGIACAGTGLK--------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred h---cChhhhhhHHHHHhhhhcCCCcH--------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 3 47779999999999988764211 1222222222221 11 013334444555556667776555555
Q ss_pred HHH
Q 003608 585 NLA 587 (808)
Q Consensus 585 ~L~ 587 (808)
++.
T Consensus 669 ~l~ 671 (929)
T KOG2062|consen 669 QLE 671 (929)
T ss_pred HHH
Confidence 444
No 154
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.55 E-value=1.8e+02 Score=33.16 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=64.8
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccc------cCC-hhHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHIN------FSD-QNNFRK 500 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~------~~~-~~~~~~ 500 (808)
.+.+.|-+|+-++-.++++++-. ...-+.....+.+.+--+|..|..++.-|+... +.+ ......
T Consensus 210 ~D~~Vrt~A~eglL~L~eg~kL~--------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~ 281 (823)
T KOG2259|consen 210 QDFRVRTHAVEGLLALSEGFKLS--------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDA 281 (823)
T ss_pred CCcchHHHHHHHHHhhccccccc--------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHH
Confidence 46788888888888888864321 111111222345667788888866666665432 111 145788
Q ss_pred HHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 501 ALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 501 ~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
++..++..+.|-+..||+.|+.+|..|-..
T Consensus 282 aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 282 AFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 888999999999999999999999988655
No 155
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.18 E-value=1.6e+02 Score=32.34 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh-chhhHHHHHHHHH---Hhc
Q 003608 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV-ENEDLVFTLETIV---DKF 571 (808)
Q Consensus 496 ~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~-~~~~l~~~l~~iv---~~~ 571 (808)
..+..++..+.+...|++..+|-.||..|.+....+ ++..+.|.+.++..+..-+-+. +.+....+|.++. ...
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~--P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA--PDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC--cHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 568889999998889999899999999999999884 7888888888887776555443 3333455555543 332
Q ss_pred -cccccchHHHHHHHHHH
Q 003608 572 -GEEMAPYALGLCQNLAA 588 (808)
Q Consensus 572 -~~~i~p~~~~l~~~L~~ 588 (808)
+..+.+|...+.-.+.+
T Consensus 332 ~~~~l~~~~l~ialrlR~ 349 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRT 349 (533)
T ss_pred hhcchhhhchhHHHHHHH
Confidence 45788888888877765
No 156
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=72.06 E-value=33 Score=37.79 Aligned_cols=103 Identities=12% Similarity=0.253 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchhhH----HHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHH
Q 003608 317 RVTNLILQYLSNSISKNSMYNLLQPRL----DVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMD 392 (808)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l----~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ 392 (808)
+.+.+.++...++..++.. .+.+++ ..++..++-++|+..++. ++.|..|.-|+.
T Consensus 262 ~lL~~lm~m~rSLl~Np~i--~lepYlh~L~PSvlTCvVsk~l~~~p~~-------------------dnhwaLRDfAA~ 320 (576)
T KOG2549|consen 262 ELLIYLMRMVRSLLDNPNI--FLEPYLHQLVPSVLTCVVSKNLCLRPEL-------------------DNHWALRDFAAR 320 (576)
T ss_pred HHHHHHHHHHHHHhcCCcc--chhhHHHHHhhHHHHhhhhhhccCCccc-------------------cchHHHHHHHHH
Confidence 5667777777777777754 234443 445555556666654421 235889999999
Q ss_pred HHHHHHHhcccchH---HHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHH
Q 003608 393 FVSELVRKRGKENL---QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 446 (808)
Q Consensus 393 ll~~l~~~~~~~~~---~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~ 446 (808)
++..+++.++...- +-+...+...+.. + ...|...+|++..+..+...
T Consensus 321 ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D----~--~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 321 LLAQICKNFSTLYNNLQPRITRTLSKALLD----N--KKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhcC----C--CCCchhhhhHHHHHHHhhhh
Confidence 99999999876432 2233333333332 2 25789999999988877653
No 157
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=71.84 E-value=62 Score=34.38 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHh------hhcCCCCChhhhhhHHHHHHHh
Q 003608 614 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYM------TFFSPTISLEMWSLWPLMMEAL 687 (808)
Q Consensus 614 ~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~------~~~~~~~~p~l~~~~~~l~~~~ 687 (808)
.+.-+..|+++++ |.-+..++.-+...|..|++.+-.-..|.|+.+|++= .++...+-| -+||.+++.-
T Consensus 319 FL~ElEEILe~ie--p~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilP---iiFpaLyr~s 393 (457)
T KOG2085|consen 319 FLNELEEILEVIE--PSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILP---IVFPALYRNS 393 (457)
T ss_pred eHhhHHHHHHhcC--HHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeee---hhhHHHHHHH
Confidence 3666777777764 5667777788888899999877778899999999732 234444444 4577777775
Q ss_pred h-hhHHhhhhhhhhhhhhhhccCccc
Q 003608 688 A-DWAIDFFPNILVPLDNYISRGTAH 712 (808)
Q Consensus 688 ~-~~~~~~~~~~~~~L~~~i~~~~~~ 712 (808)
+ .|......-+..++.-|...++.-
T Consensus 394 k~hWN~~i~~l~~nvlk~f~emd~~L 419 (457)
T KOG2085|consen 394 KSHWNQAIHNLILNVLKTFMEMDPKL 419 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 3 355555566667777776666654
No 158
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.76 E-value=1.2e+02 Score=31.68 Aligned_cols=126 Identities=11% Similarity=0.147 Sum_probs=64.0
Q ss_pred ccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHH
Q 003608 402 GKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAA 481 (808)
Q Consensus 402 ~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~ 481 (808)
..+++..++..+.+++... . .+...+ ...+.. .+ ...+.+|+. .+..++.+++..|+
T Consensus 70 ~~d~v~yvL~li~dll~~~---------~-~~~~~~---~~~~~~----~~-~~~~~~fl~-----ll~~~D~~i~~~a~ 126 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDD---------P-SRVELF---LELAKQ----DD-SDPYSPFLK-----LLDRNDSFIQLKAA 126 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-S---------S-SSHHHH---HHHHH-----TT-H--HHHHHH-----H-S-SSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC---------H-HHHHHH---HHhccc----cc-chhHHHHHH-----HhcCCCHHHHHHHH
Confidence 4567888888888887652 1 111112 111111 11 012345543 34567889999999
Q ss_pred HHHHhhhccccC-Ch----hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003608 482 WVAGQYAHINFS-DQ----NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (808)
Q Consensus 482 ~~l~~~~~~~~~-~~----~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll 552 (808)
.+++.+...... .. +.+..+++.+.+.+++++..++..|+.++..++.....+..+.. ...++.+..++
T Consensus 127 ~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL 200 (312)
T PF03224_consen 127 FILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHH
Confidence 999988654311 11 23444444444444434555778999999999876543333322 55555555555
No 159
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.76 E-value=2e+02 Score=33.05 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=55.4
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccc-cCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHIN-FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 463 ~~v~~~l~~~~~~lr~~a~~~l~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
.+++....++..-+|.|+|..+....+.. -.++..+..+...++..+.|..+.||..|..||.++-+..
T Consensus 88 ~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 88 YHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP 157 (892)
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC
Confidence 45555666778899999999999987632 2344678888999999999999999999999999997543
No 160
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=70.70 E-value=23 Score=32.82 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=78.0
Q ss_pred hhHHHHHHHHcccC-hhhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCcccccc
Q 003608 637 PTLLPIMRRMLTTD-GQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLT 715 (808)
Q Consensus 637 ~~~~p~i~~~l~~~-~~~~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~ 715 (808)
+.+++.+..++..+ ......+++.+++.+ +.++|.-......-.+- ....+.-....+... ...+...
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGil----GALDP~~~k~~~~~~~~--~~~~~~~~~~~~~~l--~~~~~~~--- 77 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGIL----GALDPYKHKSIQKSLDS--KSSENSNDESTDISL--PMMGISP--- 77 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----cccCcHHHhcccccCCc--cccccccccchhhHH--hhccCCC---
Confidence 45666666666654 357788888888877 67777644321100000 000000000000000 0011100
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 003608 716 CKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVV 792 (808)
Q Consensus 716 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~~~~i 792 (808)
..++-|...++..+.+++.++..... ...+...+..++...+..-.+|++++++.++..+....+ ..+..+++-+
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~-h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL 152 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSH-HTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQL 152 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHH
Confidence 01224566666777777776654332 235667777777777777889999999999999997654 5555554433
No 161
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.69 E-value=2.1e+02 Score=33.27 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=82.2
Q ss_pred cCCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q 003608 383 LYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (808)
Q Consensus 383 ~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~ 462 (808)
.+..+.+..+.+..+.+..++.- ...+..+.+.+. +....+-+.+.++.+.........-. ....
T Consensus 405 g~e~K~aivd~Ii~iie~~pdsK-e~~L~~LCefIE----------Dce~~~i~~rILhlLG~EgP~a~~Ps-kyir--- 469 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPDSK-ERGLEHLCEFIE----------DCEFTQIAVRILHLLGKEGPKAPNPS-KYIR--- 469 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHH----------hccchHHHHHHHHHHhccCCCCCCcc-hhhH---
Confidence 35667778888888877654311 122233333332 33456667777777776655432111 1112
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 463 ~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
++.+..--.+..+|+.|.-++.+|+- .++...+.+...+..|+.|++.-||..|..++..+-+.
T Consensus 470 -~iyNRviLEn~ivRaaAv~alaKfg~---~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 470 -FIYNRVILENAIVRAAAVSALAKFGA---QDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred -HHhhhhhhhhhhhHHHHHHHHHHHhc---CCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 22222223578999999999999982 24445677888888999999999999999999988754
No 162
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.44 E-value=62 Score=33.77 Aligned_cols=176 Identities=9% Similarity=0.067 Sum_probs=92.3
Q ss_pred hhhHHHHHHHhhhccccCChh-H-HHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc-cccccccchHHHHHHHHHHh
Q 003608 476 LRAKAAWVAGQYAHINFSDQN-N-FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLM 552 (808)
Q Consensus 476 lr~~a~~~l~~~~~~~~~~~~-~-~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~ll~~l~~ll 552 (808)
=|-.|+--+-.+.+.. .+.. + -...+..++..+++++.-||..|++.|.+...+.. ..+.+-.. ..++.|+..+
T Consensus 99 ~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~--~~L~~Ll~~l 175 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIEL--GALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHc--ccHHHHHHHH
Confidence 3445566665555421 2221 1 12233444457888888999999999999998753 22222211 1556666666
Q ss_pred hhhchhh----HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCC
Q 003608 553 NEVENED----LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL 628 (808)
Q Consensus 553 ~~~~~~~----l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~ 628 (808)
+..+... .+.+++++++.+......+... .. ...+..+++++.. ...+...++..++.++..-.++
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~--~G-~~~L~~vl~~~~~-------~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL--NG-YQVLRDVLQSNNT-------SVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc--CC-HHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhhhhh
Confidence 6433332 5777888888775433322110 00 1122334544322 1345556788888888876555
Q ss_pred hHHHHHHHhhHHHHHH-HHcccChhhHHHHHHHHHHHhhh
Q 003608 629 PHLFVQIEPTLLPIMR-RMLTTDGQEVFEEVLEIVSYMTF 667 (808)
Q Consensus 629 ~~~~~~~~~~~~p~i~-~~l~~~~~~~~e~~l~ll~~~~~ 667 (808)
.++.. ...+|... ....+...+..+.++.-...+++
T Consensus 246 ~d~~~---~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 246 EDIAS---SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHH---HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 44332 33333222 22233445666666655555543
No 163
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=69.64 E-value=1.4e+02 Score=30.73 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch----HHHHHHHHHHhhhhc
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL----PQLLDEFFKLMNEVE 556 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l----~~ll~~l~~ll~~~~ 556 (808)
..+++++.+-..|..++..|+.-||+.+..+++++. .+.+...+ ..++..++.++...+
T Consensus 79 lapnlmpdLQrGLiaddasVKiLackqigcilEdcD-tnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCD-TNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCc-hhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 456667777777777788899999999999999984 44444433 345666666665433
No 164
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=69.62 E-value=12 Score=30.97 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=42.1
Q ss_pred ccCCHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHH
Q 003608 382 DLYSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK 446 (808)
Q Consensus 382 d~~s~r~~a~~ll~~l~~~~~~~---~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~ 446 (808)
+.|..|.-|++++..+++.++.. .-+-+...+...+.+ | ..++...+||+..++.++..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d----~--~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLD----P--KKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcC----C--CCCHHHHHHHHHHHHHHHHH
Confidence 45889999999999999998753 233444444444432 3 24788999999999988543
No 165
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=69.60 E-value=2.6e+02 Score=33.87 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
.-+|-+|+.-+..+....+......+++-+.+.++-. ++...|. +++.+++-+|..---.+....++.+++..
T Consensus 355 t~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~----e~~~aWH---gacLaLAELA~rGlLlps~l~dVvplI~k 427 (1133)
T KOG1943|consen 355 TVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPA----EDDSAWH---GACLALAELALRGLLLPSLLEDVVPLILK 427 (1133)
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcC----CchhHHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3478889988888888877665555555444443321 1124577 88889988875521111112233343332
Q ss_pred ccccccc----CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc-----CCCCCCchHHhHHHHHHHHHHh
Q 003608 464 HVFPEFS----SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG-----LRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 464 ~v~~~l~----~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~-----l~~~~~~V~~~A~~al~~~~~~ 530 (808)
-+.-+-. +...-+|.+||+++-.|+... ++..+.++++.+.++ +-|++.-+|.+|..|+...+--
T Consensus 428 aL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ray--s~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 428 ALHYDVRRGQHSVGQHVRDAACYVCWAFARAY--SPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhcC--ChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 1111100 112478999988887765432 233334444433333 4588888999999999887743
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.10 E-value=27 Score=39.84 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=78.4
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~ 508 (808)
|--.|.+|..++|.+... .+ .+.... |-++-.+-+|.+|+.+...+|-.+.-.- ....+..+=..
T Consensus 568 nDDVrRaAVialGFVl~~---dp---~~~~s~----V~lLses~N~HVRyGaA~ALGIaCAGtG-----~~eAi~lLepl 632 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFR---DP---EQLPST----VSLLSESYNPHVRYGAAMALGIACAGTG-----LKEAINLLEPL 632 (929)
T ss_pred chHHHHHHHHHheeeEec---Ch---hhchHH----HHHHhhhcChhhhhhHHHHHhhhhcCCC-----cHHHHHHHhhh
Confidence 456888999999976532 21 122222 2222225689999999999999865331 23334444444
Q ss_pred CCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh
Q 003608 509 LRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED 559 (808)
Q Consensus 509 l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~ 559 (808)
..|+..-||-.|+.|+.-+.-.+ .+.+-|-...+-+.+.+.+++-..+.
T Consensus 633 ~~D~~~fVRQgAlIa~amIm~Q~--t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 633 TSDPVDFVRQGALIALAMIMIQQ--TEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred hcChHHHHHHHHHHHHHHHHHhc--ccccCchHHHHHHHHHHHhhhhhhHH
Confidence 45777779999999999988765 68889999999999999998754443
No 167
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.50 E-value=37 Score=36.11 Aligned_cols=103 Identities=15% Similarity=0.283 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchhhHHHHHHHHH----hhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHH
Q 003608 316 DRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIV----FPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASM 391 (808)
Q Consensus 316 ~~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li----~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~ 391 (808)
-..+.+.++....++.++.. .+.+++-.++..++ -+.++-+++ .++.|..|..|+
T Consensus 231 l~~L~~lm~~v~ALl~N~~l--~le~Ylh~Lip~vltclv~~~l~~~~~-------------------~~~h~~LRd~AA 289 (343)
T cd08050 231 LALLIYLMRMVRALLDNPNL--HLEPYLHQLIPSVLTCLVAKQLCSRPP-------------------DDNHWALRDYAA 289 (343)
T ss_pred HHHHHHHHHHHHHHhcCCCC--chHHhHHHHHHHHHHHhhhHhhcCCCC-------------------CchHHHHHHHHH
Confidence 34567778888888887765 34555555444433 222211110 124588999999
Q ss_pred HHHHHHHHhcccc---hHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHH
Q 003608 392 DFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (808)
Q Consensus 392 ~ll~~l~~~~~~~---~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~ 445 (808)
+++..+++.++.. +-+-+...+...+.. +. .....++||+..++.++.
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d----~~--~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLD----PK--KPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC----CC--CCcchhhHHHHHHHHhCc
Confidence 9999999998753 334444444444432 21 245569999999887753
No 168
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=66.88 E-value=1.9e+02 Score=31.14 Aligned_cols=233 Identities=12% Similarity=0.240 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcc--hHHHH
Q 003608 384 YSPRTASMDFVSELVRKRGKE---NLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPY--KSELE 458 (808)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~---~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~--~~~l~ 458 (808)
+..+.++.+.+....++|++. .++.+++.+.+.+.+....+ ..++ .-..++..++.+++...-...+ ...+.
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~--~~D~-lv~~al~FL~~v~~~~~~~~lf~~~~~L~ 186 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQP--KYDI-LVSKALQFLSSVAESPHHKNLFENKPHLQ 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSG--GGHH-HHHHHHHHHHHHHTSHHHHTTT-SHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cccH-HHHHHHHHHHHHHcchhHHHHhCCHHHHH
Confidence 456777777777777777653 33444555555565432211 1122 3334555566655443222122 34677
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh-hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccccccc
Q 003608 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ-NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI 537 (808)
Q Consensus 459 ~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l 537 (808)
.++.+.|+|.+. +|..=. ..|. .+| |+.+. =+.. .|. ...|.+|+.-+..++... ++.+
T Consensus 187 ~Iie~VI~Pnl~-----~~e~D~---ElfE----ddP~EYIrr----d~e~-sd~-~TrR~AA~dfl~~L~~~~--~~~v 246 (370)
T PF08506_consen 187 QIIEKVIFPNLC-----LREEDE---ELFE----DDPEEYIRR----DLEG-SDS-DTRRRAACDFLRSLCKKF--EKQV 246 (370)
T ss_dssp HHHHHTHHHHHS-------HHHH---HHHH----HSHHHHHHH----HSCS-S----SHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHhccCccC-----CCHHHH---HHHc----cCHHHHHHh----hccc-ccc-CCcHHHHHHHHHHHHHHH--hHHH
Confidence 777777777653 111100 0111 122 44333 2222 232 346889999999998774 4555
Q ss_pred ccchHHHHHHHHHHhhhh------chhhHHHHHHHHHHhcc---c---cccchHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 003608 538 RPILPQLLDEFFKLMNEV------ENEDLVFTLETIVDKFG---E---EMAPYALGLCQNLAAAFWRCMNTAEADEDADD 605 (808)
Q Consensus 538 ~p~l~~ll~~l~~ll~~~------~~~~l~~~l~~iv~~~~---~---~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~ 605 (808)
.+.+...++.++.-.+.. ..|.....+.++..+.. . .+.+.. ++.+.+.+.+..-+. +.. +
T Consensus 247 ~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v-~v~~Ff~~~v~peL~-~~~-----~ 319 (370)
T PF08506_consen 247 TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV-DVVDFFSQHVLPELQ-PDV-----N 319 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS--HHHHHHHHTCHHHH--SS------
T ss_pred HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc-cHHHHHHHHhHHHhc-ccC-----C
Confidence 555555555554422221 12346666777765442 1 111111 223222221111122 111 1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChh
Q 003608 606 PGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (808)
Q Consensus 606 ~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~ 652 (808)
..++.+..++..+...-..+. ++ .-..++|.+...+..+..
T Consensus 320 ~~piLka~aik~~~~Fr~~l~--~~----~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 320 SHPILKADAIKFLYTFRNQLP--KE----QLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp S-HHHHHHHHHHHHHHGGGS---HH----HHHHHHHHHHHHTTSS-H
T ss_pred CCcchHHHHHHHHHHHHhhCC--HH----HHHHHHHHHHHHhCCCCc
Confidence 245666566666554433332 22 225578888888876544
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=66.44 E-value=22 Score=41.47 Aligned_cols=90 Identities=16% Similarity=0.253 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh------hHHHHHHHHHHh
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE------DLVFTLETIVDK 570 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~------~l~~~l~~iv~~ 570 (808)
.++.+++.++++|.-++..||+++..++..++... +.....|+..++..++.+-..-++. ....+|..+.++
T Consensus 906 ~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~--~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~ 983 (1030)
T KOG1967|consen 906 QFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES--ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRR 983 (1030)
T ss_pred chhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc--cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhcc
Confidence 46889999999999899999999999999999874 6777889999999999887655432 234556666664
Q ss_pred cc-ccccchHHHHHHHHHH
Q 003608 571 FG-EEMAPYALGLCQNLAA 588 (808)
Q Consensus 571 ~~-~~i~p~~~~l~~~L~~ 588 (808)
.. ..+-||-+++++.|.+
T Consensus 984 ~P~~~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 984 LPTKSLLSFRPLVLRALIK 1002 (1030)
T ss_pred CCCcccccccHHHHHHhhh
Confidence 43 5678899888887765
No 170
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.37 E-value=69 Score=36.15 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc----CCCh---HHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcC
Q 003608 6 LALILQGALSPNPEERKAAEHSLNQFQY----TPQH---LVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQ 78 (808)
Q Consensus 6 l~~~l~~~ls~d~~~r~~Ae~~L~~~~~----~p~f---~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~ 78 (808)
|.-+|...-||+..+|+..-+-|+++.+ .|.- +..|++...+++.+..+|.++.++++..+.+
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R---------- 94 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR---------- 94 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc----------
Confidence 3445666778999999999998887753 3542 4688888888776889999999999988865
Q ss_pred CCCChhHHHHHHHHHHHHHhc
Q 003608 79 QKISQVDKDMVRDHILVFVAQ 99 (808)
Q Consensus 79 ~~l~~e~k~~ir~~ll~~l~~ 99 (808)
++.++|..+--.+++++..
T Consensus 95 --l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 --LDDEERRELLPSLLKGISK 113 (501)
T ss_pred --CCHHHHHHHHHHHHHhhcc
Confidence 8999999888888888864
No 171
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=65.33 E-value=38 Score=41.13 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhcccchH---HHHHHHHHHHhcccCCCC-CCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q 003608 387 RTASMDFVSELVRKRGKENL---QKFIQFIVGIFKRYDETP-VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLV 462 (808)
Q Consensus 387 r~~a~~ll~~l~~~~~~~~~---~~il~~i~~~l~~~~~~~-~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~ 462 (808)
|..|.-+|..+++++|.... +.+.+++...++.+.... ..-.....-++++...|. .+.. +.+.+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s---~l~~-------~~~~l- 818 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHS---FLHP-------LGSLL- 818 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhh---hhhh-------hhhhh-
Confidence 77788899999999987544 445566666666543211 000011111222111111 1111 11111
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchH
Q 003608 463 QHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILP 542 (808)
Q Consensus 463 ~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~ 542 (808)
..+...+.+.++.+|..|..++|-+.... .-+....++..++..+.+.+..++-.++..+-..+... ..-.+.||.+
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~-l~~~l~~~~~ 895 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSA--TRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV-LMVGLVPYNP 895 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh-hcccccccce
Confidence 11222344678999999999999886532 33667889999999998877667666555544444433 3567889999
Q ss_pred HHHHHHHHHhhhhchh---hHHHHHHHHHHh
Q 003608 543 QLLDEFFKLMNEVENE---DLVFTLETIVDK 570 (808)
Q Consensus 543 ~ll~~l~~ll~~~~~~---~l~~~l~~iv~~ 570 (808)
-++.-++..++..... ....+...++-.
T Consensus 896 Llv~pllr~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcc
Confidence 9999888888754221 234445555443
No 172
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.13 E-value=63 Score=31.00 Aligned_cols=88 Identities=23% Similarity=0.312 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHH---HHHHH---hc
Q 003608 498 FRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTL---ETIVD---KF 571 (808)
Q Consensus 498 ~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l---~~iv~---~~ 571 (808)
.-.+++.+...|.+.+-+-+..|...+..++... .+.+.|.+|+++-.+=..+...+.+....+| +.++. -.
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~--g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAG--GEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc--ccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 3556777777777777778888988888888774 6999999999999998888877766554444 44433 24
Q ss_pred cccccchHHHHHHHHH
Q 003608 572 GEEMAPYALGLCQNLA 587 (808)
Q Consensus 572 ~~~i~p~~~~l~~~L~ 587 (808)
|..+.||..++...+-
T Consensus 190 G~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhHHHHhhhhhh
Confidence 6788999988886553
No 173
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=65.03 E-value=85 Score=29.69 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChhh
Q 003608 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEM 676 (808)
Q Consensus 613 ~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~l 676 (808)
.....+..+++. + .++-...+-+.+++.+...++..+.+....++.++..++..++.+.+.+
T Consensus 57 lA~~g~~dll~~-~-~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aL 118 (183)
T PF10274_consen 57 LARQGIKDLLER-G-GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEAL 118 (183)
T ss_pred HHHHHHHHHHHh-c-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 345666667666 2 2233334567788888889988888999999999999987766555544
No 174
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=64.52 E-value=62 Score=27.63 Aligned_cols=77 Identities=8% Similarity=0.177 Sum_probs=54.4
Q ss_pred ccccchHHHHHHHHHHhhhhc-------hhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhH
Q 003608 536 EIRPILPQLLDEFFKLMNEVE-------NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGA 608 (808)
Q Consensus 536 ~l~p~l~~ll~~l~~ll~~~~-------~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~ 608 (808)
.+.+++-.++..+-..+++.+ ......+++.+++..++.+.++.++++..|.. .++ .|
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~s----aL~----~~------- 68 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQS----ALE----IP------- 68 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhC----ch-------
Confidence 455677777777777776554 12367888889998899999888888876654 222 11
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 003608 609 LAAVGCLRAISTILESVSR 627 (808)
Q Consensus 609 ~~~~~~l~~i~~li~~~~~ 627 (808)
-+....++|...+++.+.+
T Consensus 69 eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 69 ELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred hHHHHHHHHHHHHHHhCCH
Confidence 1456789999999999864
No 175
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=63.92 E-value=1.4e+02 Score=30.20 Aligned_cols=123 Identities=14% Similarity=0.135 Sum_probs=72.8
Q ss_pred chhhHHHHHHHHHHHHHHhhc--CCcchHHHHHHHhhcccccccCC-Cc---chhhHH---HHHHHhhhccccCChhHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSSP-VG---HLRAKA---AWVAGQYAHINFSDQNNFR 499 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~--~~~~~~~l~~~l~~~v~~~l~~~-~~---~lr~~a---~~~l~~~~~~~~~~~~~~~ 499 (808)
..-.-++++-.+..++..+.. .+.+..-...||.. ++..+.+. .. ..|+.| ..+.+-.....-.....+.
T Consensus 110 HrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~-~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~ 188 (255)
T PF10350_consen 110 HRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDE-LLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLH 188 (255)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-HHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHH
Confidence 445677788888888887763 22233333455544 22333333 12 455544 2333333322211125677
Q ss_pred HHHHHHHhcCCCCC--------CchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHh
Q 003608 500 KALHSVVSGLRDPE--------LPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLM 552 (808)
Q Consensus 500 ~~~~~ll~~l~~~~--------~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll 552 (808)
..+..+++.-..+. ..-|++|...|+.++.+....+.+.||+++.+..-+..+
T Consensus 189 ~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 189 RTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGF 249 (255)
T ss_pred HHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC
Confidence 77777777765432 247889999999999887767888888888876655443
No 176
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=63.54 E-value=1.4e+02 Score=31.45 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=81.4
Q ss_pred CcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHH---HHHHHHHh--cCChHHHHHHHHHHHHHHhhhCCC-
Q 003608 49 NCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVR---DHILVFVA--QVPPLLRVQLGECLKTIIHADYPE- 122 (808)
Q Consensus 49 ~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir---~~ll~~l~--~~~~~i~~~~~~~i~~Ia~~d~p~- 122 (808)
..+.+.|.-++..+.+.+++.-..+ .++ ...++- ..++..|. -+++.+....+..+...++++---
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~-------~~p-~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~ 158 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSR-------SPP-TVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAK 158 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB---------H-HHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHH
T ss_pred hCCCcccccHHHHHHHHHhhccCCC-------CCc-hHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHH
Confidence 4688899999999988887765542 211 133442 23555542 346667777777777666644110
Q ss_pred --CChhHHHHHHHHhchh--hH-HHHHHHHHHHHHHcccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccCCChhHHHHH
Q 003608 123 --QWPHLLDWVKHNLQDQ--QV-YGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLI 197 (808)
Q Consensus 123 --~Wp~ll~~l~~~l~s~--~~-~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 197 (808)
-+++.+..+++.++.+ .+ --|+.++++++... .....+.+..-+..+...+..++.+++ .-++
T Consensus 159 ~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-------k~~~a~fl~~n~d~ff~~~~~Ll~s~N-----Yvtk 226 (335)
T PF08569_consen 159 IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-------KKLVAEFLSNNYDRFFQKYNKLLESSN-----YVTK 226 (335)
T ss_dssp HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-------HHHHHHHHHHTHHHHHHHHHHHCT-SS-----HHHH
T ss_pred HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHHHHHHHHccCCC-----eEee
Confidence 1233444566676666 22 44677777777542 223344555566667777777776543 4567
Q ss_pred HHHHHHhHHhh
Q 003608 198 KLICKIFWSSI 208 (808)
Q Consensus 198 ~~~lk~~~~~~ 208 (808)
+.++|.+..+.
T Consensus 227 rqslkLL~ell 237 (335)
T PF08569_consen 227 RQSLKLLGELL 237 (335)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHH
Confidence 78888887765
No 177
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.65 E-value=3.2e+02 Score=32.32 Aligned_cols=157 Identities=8% Similarity=0.029 Sum_probs=78.7
Q ss_pred ccccccCC-CcchhhHHHHHHHhhhccccCChhHHHH--HHHHHHhcCCC-CCCchHHhHHHHHHHHHHhcccccccccc
Q 003608 465 VFPEFSSP-VGHLRAKAAWVAGQYAHINFSDQNNFRK--ALHSVVSGLRD-PELPVRVDSVFALRSFVEACRDLNEIRPI 540 (808)
Q Consensus 465 v~~~l~~~-~~~lr~~a~~~l~~~~~~~~~~~~~~~~--~~~~ll~~l~~-~~~~V~~~A~~al~~~~~~~~~~~~l~p~ 540 (808)
++..|+.. ++=+.--||.++....+...+.-..... .++.++..|.- +-.-|..++..||+.+-+.. .+..++.-
T Consensus 216 Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL~AG 294 (1051)
T KOG0168|consen 216 LVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PKAILQAG 294 (1051)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHHhcc
Confidence 33445543 3445666777777777755333333222 66666666542 33348889999999887764 24444432
Q ss_pred hHHHHHHHHHHhhhhchhhHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHH
Q 003608 541 LPQLLDEFFKLMNEVENEDLVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAIS 619 (808)
Q Consensus 541 l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~ 619 (808)
.-...-.++..+...-......+...++..+. +++. |..+.+..|.. +++... .+. .-+..-|+.
T Consensus 295 ~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~-~v~ealPlL~~----lLs~~D-------~k~--ies~~ic~~ 360 (1051)
T KOG0168|consen 295 ALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH-FVMEALPLLTP----LLSYQD-------KKP--IESVCICLT 360 (1051)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch-HHHHHHHHHHH----HHhhcc-------chh--HHHHHHHHH
Confidence 22222233333332111112222333333333 4443 33344444443 333221 122 235566778
Q ss_pred HHHHhhcCChHHHHHHH
Q 003608 620 TILESVSRLPHLFVQIE 636 (808)
Q Consensus 620 ~li~~~~~~~~~~~~~~ 636 (808)
.++......|+.+.++.
T Consensus 361 ri~d~f~h~~~kLdql~ 377 (1051)
T KOG0168|consen 361 RIADGFQHGPDKLDQLC 377 (1051)
T ss_pred HHHHhcccChHHHHHHh
Confidence 88888776676655443
No 178
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.10 E-value=31 Score=38.24 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=56.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
++-+.|.-++.++..+.+.+.+..+ .+-+.|...+...+-+-.+.+|..|..++++|-+....++.....++..+++
T Consensus 103 kdk~VR~r~lqila~~~d~v~eIDe---~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vq 179 (885)
T COG5218 103 KDKKVRKRSLQILALLSDVVREIDE---VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQ 179 (885)
T ss_pred cchhHHHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Confidence 4678888889899988887765322 2222222222222336679999999999999987543333344555555554
Q ss_pred cCCCCCCchHHhHHH
Q 003608 508 GLRDPELPVRVDSVF 522 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~ 522 (808)
. ||+.-||..|..
T Consensus 180 n--DPS~EVRr~all 192 (885)
T COG5218 180 N--DPSDEVRRLALL 192 (885)
T ss_pred c--CcHHHHHHHHHH
Confidence 3 566567766644
No 179
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=61.19 E-value=27 Score=40.89 Aligned_cols=141 Identities=15% Similarity=0.095 Sum_probs=87.9
Q ss_pred HHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC--CCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCccc
Q 003608 635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS--PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAH 712 (808)
Q Consensus 635 ~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~--~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~ 712 (808)
+...++|.+..-+......--.--+..++.++.+- +.+-|.+..++|.+++.+.--+.+.--+....+.-.+...+.-
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 34456666666655222222222244555666553 4667888899999999985444555445566666666555442
Q ss_pred ccccCCchHHHHHHHHHHHHhcCCC-CCCCccCchhHHHHHHHHHcCcC-cccchHHHHHHHHHHHhhch
Q 003608 713 FLTCKEPDYQQSLWSMVSSIMADKN-LEDGDIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRRAE 780 (808)
Q Consensus 713 ~l~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~a~~ll~~ii~~~~~~-~~~~l~~il~~~~~~l~~~~ 780 (808)
.. +++..++..+..+-.+.. ..-..+..|..+++++.+..|.. ..+|-+.++.++.+-|.++|
T Consensus 944 -~t----~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 944 -QT----EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred -ch----HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 22 566666654443322222 12333567899999999988876 88999999999999998764
No 180
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.88 E-value=5.1e+02 Score=33.81 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=68.0
Q ss_pred HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCC-CchHHhHHHHHHHHHHhcccc
Q 003608 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPE-LPVRVDSVFALRSFVEACRDL 534 (808)
Q Consensus 456 ~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~V~~~A~~al~~~~~~~~~~ 534 (808)
.+..+-...+...+..++|.+|.++...+++.+... .++.+.....+..+..+.+.. +.-|..=..|+..+..... .
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v-~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg-s 949 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVV-GSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG-S 949 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc-C
Confidence 344443444556677789999999999999988643 234567778888888887654 4445444555555554431 1
Q ss_pred cccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhccc
Q 003608 535 NEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGE 573 (808)
Q Consensus 535 ~~l~p~l~~ll~~l~~ll~~~~~~~----l~~~l~~iv~~~~~ 573 (808)
-.=..++..-+..++.+.++..... -..++.-+++..+.
T Consensus 950 ~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p 992 (2067)
T KOG1822|consen 950 IGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGP 992 (2067)
T ss_pred CCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCc
Confidence 1112355565666777766654422 23344444444333
No 181
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=58.35 E-value=57 Score=29.38 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHhhhccccCChhH-H-HHHHHHHHhcCCCCCCchHHhHHHHH
Q 003608 474 GHLRAKAAWVAGQYAHINFSDQNN-F-RKALHSVVSGLRDPELPVRVDSVFAL 524 (808)
Q Consensus 474 ~~lr~~a~~~l~~~~~~~~~~~~~-~-~~~~~~ll~~l~~~~~~V~~~A~~al 524 (808)
.-+...++.+++.|.+|. +.+. . ..+++.+++.|++++ .+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 678889999999998765 3322 1 237888888886555 588888875
No 182
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.32 E-value=1.6e+02 Score=33.07 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=56.9
Q ss_pred HHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCC--hhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 456 ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD--QNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 456 ~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
-+.+++. +++..+.++..-+|.|+|..+...++.. ++ +.....++..+.+.+-|..+.||..|..+|..+-+..
T Consensus 88 ~V~~~~~-h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 88 LVAGTFY-HLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHHHH-HHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 3445554 5666677788899999999999988754 22 3556777777777777889999999999999987543
No 183
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.16 E-value=4e+02 Score=32.03 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhc-cccCCh-hHHHHHHHHHHhcCC--
Q 003608 435 GALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAH-INFSDQ-NNFRKALHSVVSGLR-- 510 (808)
Q Consensus 435 a~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~-~~~~~~-~~~~~~~~~ll~~l~-- 510 (808)
-.+..+|.+++.+.++ +...+...+.+ |+--+.++.+.++.-|--|+-..+. ..+..+ .....-...+++.+.
T Consensus 567 i~ld~I~~~a~~~g~~--F~~~L~~~ly~-vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~ 643 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEE--FQPELMDYLYP-VLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALR 643 (1014)
T ss_pred hhhhhhHHHHHHhHHH--HHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHH
Confidence 3455677777665442 33334333333 2222346677776655544444332 122222 334444444444432
Q ss_pred CCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhh
Q 003608 511 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV 555 (808)
Q Consensus 511 ~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~ 555 (808)
..-.++.-.+-.-+.-.+.. +.....|++.++++..+..++..
T Consensus 644 L~~~~~s~~~~~Vl~vVl~~--s~~~~i~~l~dvvq~i~~~lD~y 686 (1014)
T KOG4524|consen 644 LNTSGMSPRVPDVLMVVLQY--SDYGTIPNLKDVVQTIFKLLDYY 686 (1014)
T ss_pred hccCCCCchhHHHHHHHhhc--CCCCchhhHHHHHHHHHHHHHHh
Confidence 11122333333444444444 34566788888888888887764
No 184
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.95 E-value=66 Score=36.72 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=57.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH-HHHHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN-FRKALHSVV 506 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~-~~~~~~~ll 506 (808)
++-+.|.-++.++..+.+...+..+ .+-+-+...+...+-+-.|.+|..|..++++|-+.. .+++. ...++..++
T Consensus 97 kdk~VRfrvlqila~l~d~~~eidd---~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~-~dee~~v~n~l~~li 172 (892)
T KOG2025|consen 97 KDKKVRFRVLQILALLSDENAEIDD---DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDP-KDEECPVVNLLKDLI 172 (892)
T ss_pred cchhHHHHHHHHHHHHhccccccCH---HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHH
Confidence 4667888888888888875444322 222223333333455778999999999999997532 33332 344444444
Q ss_pred hcCCCCCCchHHhHHHHH
Q 003608 507 SGLRDPELPVRVDSVFAL 524 (808)
Q Consensus 507 ~~l~~~~~~V~~~A~~al 524 (808)
+. ||+.-||.+|...+
T Consensus 173 qn--DpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 173 QN--DPSDEVRRAALSNI 188 (892)
T ss_pred hc--CCcHHHHHHHHHhh
Confidence 43 77777888776544
No 185
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=57.04 E-value=36 Score=37.02 Aligned_cols=77 Identities=19% Similarity=0.102 Sum_probs=52.2
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
.++..+.+++-++|... ..+ .+. +.+.|+++++.+|+.|+.++|.+.... . .+.+..
T Consensus 129 ~~p~vR~aal~al~~r~-----~~~----~~~-----L~~~L~d~d~~Vra~A~raLG~l~~~~-----a----~~~L~~ 185 (410)
T TIGR02270 129 SEPPGRAIGLAALGAHR-----HDP----GPA-----LEAALTHEDALVRAAALRALGELPRRL-----S----ESTLRL 185 (410)
T ss_pred CChHHHHHHHHHHHhhc-----cCh----HHH-----HHHHhcCCCHHHHHHHHHHHHhhcccc-----c----hHHHHH
Confidence 46778888887777521 111 112 233456889999999999999976421 1 222334
Q ss_pred cCCCCCCchHHhHHHHHHHH
Q 003608 508 GLRDPELPVRVDSVFALRSF 527 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~ 527 (808)
.+.|.++.||..|+.++..+
T Consensus 186 al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 186 YLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHcCCCHHHHHHHHHHHHHc
Confidence 57889999999999999654
No 186
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.18 E-value=2e+02 Score=36.34 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003608 34 TPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLK 113 (808)
Q Consensus 34 ~p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~ 113 (808)
+|.|...+.. +...+..-.+|..+.-+++-.|=.+=- ...+..|+-|+..+...+.+.+..+|...+.+++
T Consensus 1524 ~~e~l~~l~~-~~~~~~tw~vr~avl~fl~~~vy~n~F--------v~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Ls 1594 (1710)
T KOG1851|consen 1524 QPEFLRDLKM-LTADSSTWRVRSAVLKFLQTVVYSNIF--------VSQELRRDDIRKLLESLLNDDQIEVREEAAKCLS 1594 (1710)
T ss_pred HHHHHHHHHH-HhcccchHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 4567766665 333455778888877777666644322 2456789999999999999988999999999999
Q ss_pred HHHhhhCCCCChhHHHHHHHHhchh-----hHHHHHHHHHHHHHHcccCCcCCcchHHHHHHHHhHHHHHHHHHHhcccC
Q 003608 114 TIIHADYPEQWPHLLDWVKHNLQDQ-----QVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVN 188 (808)
Q Consensus 114 ~Ia~~d~p~~Wp~ll~~l~~~l~s~-----~~~~~L~~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~ 188 (808)
-+.+.-+-.-=+.-.+......++. ..|+|...|.+++--+.| .++..+|..+....+...
T Consensus 1595 gl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy-----------~vP~wip~~L~~Ls~fa~--- 1660 (1710)
T KOG1851|consen 1595 GLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY-----------VVPLWIPKPLMNLSSFAR--- 1660 (1710)
T ss_pred HHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc-----------cchhhhHHHHHHHHhhcC---
Confidence 9998665433332222222222222 569999999999976654 344467776665554432
Q ss_pred CChhHHHHHHHHHHHhHHh
Q 003608 189 PSLEVADLIKLICKIFWSS 207 (808)
Q Consensus 189 ~~~~~~~~~~~~lk~~~~~ 207 (808)
++.......+-++.-|+..
T Consensus 1661 e~~~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1661 ESAAIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 2233344445555556553
No 187
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.06 E-value=1.5e+02 Score=33.03 Aligned_cols=149 Identities=11% Similarity=0.139 Sum_probs=85.7
Q ss_pred HHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccc-ccCCCcchhhHHHHHHHhhhcc
Q 003608 412 FIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPE-FSSPVGHLRAKAAWVAGQYAHI 490 (808)
Q Consensus 412 ~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~-l~~~~~~lr~~a~~~l~~~~~~ 490 (808)
+|.+++.. .+...|.++.++++...-+ +... ..+. .+++. .++.+.=+|++|...+|-.+
T Consensus 520 ~I~ell~d--------~ds~lRy~G~fs~alAy~G-Tgn~-------~vv~-~lLh~avsD~nDDVrRAAViAlGfvc-- 580 (926)
T COG5116 520 YINELLYD--------KDSILRYNGVFSLALAYVG-TGNL-------GVVS-TLLHYAVSDGNDDVRRAAVIALGFVC-- 580 (926)
T ss_pred HHHHHhcC--------chHHhhhccHHHHHHHHhc-CCcc-------hhHh-hhheeecccCchHHHHHHHHheeeeE--
Confidence 55566543 4678888888888864433 2221 1111 23333 45667789999998888744
Q ss_pred ccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHh
Q 003608 491 NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDK 570 (808)
Q Consensus 491 ~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~ 570 (808)
++++..+...++.+.. +.+..||...+.||.-+|.... .. ..-.+++.|..=-+..--...+-+++-|...
T Consensus 581 -~~D~~~lv~tvelLs~---shN~hVR~g~AvaLGiacag~G-~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 581 -CDDRDLLVGTVELLSE---SHNFHVRAGVAVALGIACAGTG-DK----VATDILEALMYDTNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred -ecCcchhhHHHHHhhh---ccchhhhhhhHHHhhhhhcCCc-cH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence 3455554544444332 3477899999999999997642 11 1223333333211111112345556666677
Q ss_pred ccccccchHHHHHHHHHH
Q 003608 571 FGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 571 ~~~~i~p~~~~l~~~L~~ 588 (808)
..+++.|-...+..++..
T Consensus 652 ~n~~Lnp~v~~I~k~f~~ 669 (926)
T COG5116 652 CNPELNPNVKRIIKKFNR 669 (926)
T ss_pred cCcccChhHHHHHHHHHH
Confidence 778888877777665543
No 188
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=54.28 E-value=34 Score=23.03 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHh
Q 003608 93 ILVFVAQVPPLLRVQLGECLKTIIH 117 (808)
Q Consensus 93 ll~~l~~~~~~i~~~~~~~i~~Ia~ 117 (808)
|+++|.+++..++...+.+++.|++
T Consensus 17 Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 17 LVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5556678899999999999998874
No 189
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=54.14 E-value=9.6 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCCCCchHHhHHHHHHHHH
Q 003608 501 ALHSVVSGLRDPELPVRVDSVFALRSFV 528 (808)
Q Consensus 501 ~~~~ll~~l~~~~~~V~~~A~~al~~~~ 528 (808)
.++.+++.+++++..++..|+.||.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667777777777889999999998875
No 190
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=53.92 E-value=86 Score=34.02 Aligned_cols=123 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhc--CCcchHHHHHHHh
Q 003608 385 SPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQ--TEPYKSELERMLV 462 (808)
Q Consensus 385 s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~--~~~~~~~l~~~l~ 462 (808)
++|..+..+...+ +...++.....-.. +-+.+.-+..++|.+...+.. ...+..-++.-..
T Consensus 470 s~~s~~eR~sg~l--------l~~~~~~A~~~~Ad---------~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~ 532 (728)
T KOG4535|consen 470 TPDSFQERFSGLL--------LLKMLRSAIEASAD---------KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQ 532 (728)
T ss_pred CchHHHHHHHHHH--------HHHHHHHHHHhhhh---------hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHH
Q ss_pred hcccccccCCCcchhhHHHHHHHhhhc---cccCChhHHHHHHHHHHhcCCC-CCCchHHhHHHHH
Q 003608 463 QHVFPEFSSPVGHLRAKAAWVAGQYAH---INFSDQNNFRKALHSVVSGLRD-PELPVRVDSVFAL 524 (808)
Q Consensus 463 ~~v~~~l~~~~~~lr~~a~~~l~~~~~---~~~~~~~~~~~~~~~ll~~l~~-~~~~V~~~A~~al 524 (808)
+-+--.......-+|-.||+.+|..-+ ..+.+-.....+++.++..+.+ .+-.||+.|+.||
T Consensus 533 ~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 533 ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhh
No 191
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=53.26 E-value=6.8e+02 Score=33.20 Aligned_cols=97 Identities=13% Similarity=0.269 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHHHHhhccCCCCCCcCCCCC--hhHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhhCC---CCC
Q 003608 51 DLSVRQVASIHFKNFIAKNWAPHEPNEQQKIS--QVDKDMVRDHILVFV-AQVPPLLRVQLGECLKTIIHADYP---EQW 124 (808)
Q Consensus 51 ~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~--~e~k~~ir~~ll~~l-~~~~~~i~~~~~~~i~~Ia~~d~p---~~W 124 (808)
+..++.+|.-.||..-.+.-...+ ++ .-+|..+|- +...+ ...+..||..+-.|+..|...-.. ..|
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eE------L~~f~FQkefLkP-fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGW 1222 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREE------LANYNFQNEFMKP-FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW 1222 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhh------hhchhHHHHHHHH-HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 467889998888887776654321 22 123455533 33334 356678999999999988775443 589
Q ss_pred hhHHHHHHHHhchh---hHHHHHHHHHHHHHHc
Q 003608 125 PHLLDWVKHNLQDQ---QVYGALFVLRILSRKY 154 (808)
Q Consensus 125 p~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~ 154 (808)
+.++..+-....+. -+..|..++..|++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh
Confidence 99999988777655 3577888888888764
No 192
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.81 E-value=2.2e+02 Score=31.79 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=44.4
Q ss_pred cccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccC
Q 003608 574 EMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTD 650 (808)
Q Consensus 574 ~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~ 650 (808)
.+.||..+++..+..+... .+-...|.. ++.+..+....+.+..|++-. +..|.++..++...+..++..+
T Consensus 281 ~lepYlh~L~PSvlTCvVs--k~l~~~p~~-dnhwaLRDfAA~ll~~i~k~f---~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVS--KNLCLRPEL-DNHWALRDFAARLLAQICKNF---STLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred chhhHHHHHhhHHHHhhhh--hhccCCccc-cchHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999888775543 111122222 233445555566666555543 4667778888988888888654
No 193
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.63 E-value=3.9e+02 Score=30.69 Aligned_cols=55 Identities=22% Similarity=0.128 Sum_probs=46.2
Q ss_pred cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 474 ~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
.-+|.+|..-++..+.. .|.+....+..++..++|....||+.|..||..+..+.
T Consensus 387 ~EVR~AAV~Sl~~La~s---sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATS---SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL 441 (823)
T ss_pred HHHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 45888888888777642 45678899999999999999999999999999998774
No 194
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=51.25 E-value=34 Score=24.02 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Q 003608 84 VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHA 118 (808)
Q Consensus 84 e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~ 118 (808)
.+.+++|+.+++.|...++..|.++..+|+.+.+.
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 46789999999999877788888888999888764
No 195
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=50.92 E-value=3.1e+02 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 499 ~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
...++.+.+..++++..|.++.++||.++|.+.
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn 118 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDN 118 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC
Confidence 445555666666777789999999999998764
No 196
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=49.54 E-value=3.7e+02 Score=28.99 Aligned_cols=246 Identities=9% Similarity=0.149 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCC--CcchhhHHHHH
Q 003608 406 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP--VGHLRAKAAWV 483 (808)
Q Consensus 406 ~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~--~~~lr~~a~~~ 483 (808)
++.+.++++.-+.+.. +.+++.+-+..-.|+.++|.+-..-.-..-+.++...++..+.+..+.++ +.-+..+++|+
T Consensus 37 ~~~l~~~i~rDi~~~~-~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ 115 (372)
T PF12231_consen 37 MSLLLQFIQRDISSSS-SKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWC 115 (372)
T ss_pred HHHHHHHHHHHHhccc-CCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555555554311 11122356777888888887664421111112233343433444444433 34778889999
Q ss_pred HHh--hhccccCChhHHHHHHHHHHhcCCC--CCCchHHhHHHHHHHHHHhcc--cccccccchHHHHHHHHHHhhhhch
Q 003608 484 AGQ--YAHINFSDQNNFRKALHSVVSGLRD--PELPVRVDSVFALRSFVEACR--DLNEIRPILPQLLDEFFKLMNEVEN 557 (808)
Q Consensus 484 l~~--~~~~~~~~~~~~~~~~~~ll~~l~~--~~~~V~~~A~~al~~~~~~~~--~~~~l~p~l~~ll~~l~~ll~~~~~ 557 (808)
++. |+.... +.+.... +-.++..+.+ +...+-..+..++.+++...+ ..+...-.++.++..++...+....
T Consensus 116 ls~Q~f~~~~~-~~~~~~~-l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~ 193 (372)
T PF12231_consen 116 LSDQKFSPKIM-TSDRVER-LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRT 193 (372)
T ss_pred HHcCCCCCccc-chhhHHH-HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 975 222111 1222233 3333333443 345577899999999998753 2223334566677666654443322
Q ss_pred hhHHHHHHHHH--------------HhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 003608 558 EDLVFTLETIV--------------DKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 623 (808)
Q Consensus 558 ~~l~~~l~~iv--------------~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~ 623 (808)
.. ..+...+. +.+.....+- .+++.+.+.+.+.+...+ + ...+..+...+..++.
T Consensus 194 ~a-~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~-~-------~~~a~~iW~~~i~LL~ 262 (372)
T PF12231_consen 194 KA-ISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKD-E-------YKLAMQIWSVVILLLG 262 (372)
T ss_pred HH-HHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcC-C-------cchHHHHHHHHHHHhC
Confidence 11 11111111 1111111111 122222222222333211 1 1223345555555553
Q ss_pred hhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhc
Q 003608 624 SVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFF 668 (808)
Q Consensus 624 ~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~ 668 (808)
.-. -.-.......+.+.+.|++..+...--.++..|..+++.
T Consensus 263 ~~~---~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 263 SSR---LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred Cch---hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 211 111123467888889999887777888999999999883
No 197
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=48.93 E-value=70 Score=34.36 Aligned_cols=107 Identities=18% Similarity=0.119 Sum_probs=63.4
Q ss_pred HHhhhhhhhhhhhhhhccCcccccccCCchHHH-HHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHH
Q 003608 691 AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQ-SLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYL 769 (808)
Q Consensus 691 ~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il 769 (808)
..+......++++.++.-. +. ++ ...+ .+--.+.+.|..+...+.++.+|.+++-.++..-++ ...+=..++
T Consensus 38 ~~~vraa~yRilRy~i~d~-~~-l~----~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~~~~~vv 110 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDE-ES-LQ----ILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKEIPRGVV 110 (371)
T ss_pred cHHHHHHHHHHHHHHHcCH-HH-HH----HHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cccCCHHHH
Confidence 3556666777776554432 11 10 0111 011123445544444455678999999999988432 222323344
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHhHhhChHHHHH
Q 003608 770 RITVERLRRAEKSYLKCLLVQVVSFHERANSDLSII 805 (808)
Q Consensus 770 ~~~~~~l~~~~~~~~~~~~~~~i~~~~~~n~~~~~~ 805 (808)
.+++. +....+..++..++++++.....||++..+
T Consensus 111 ralva-iae~~~D~lr~~cletL~El~l~~P~lv~~ 145 (371)
T PF14664_consen 111 RALVA-IAEHEDDRLRRICLETLCELALLNPELVAE 145 (371)
T ss_pred HHHHH-HHhCCchHHHHHHHHHHHHHHhhCHHHHHH
Confidence 44443 334466779999999999999999998754
No 198
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=48.62 E-value=1.2e+02 Score=32.26 Aligned_cols=103 Identities=12% Similarity=0.156 Sum_probs=62.8
Q ss_pred ChhhhhhHHHHHHHhhhh-------HHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCC------CC
Q 003608 673 SLEMWSLWPLMMEALADW-------AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKN------LE 739 (808)
Q Consensus 673 ~p~l~~~~~~l~~~~~~~-------~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~------~~ 739 (808)
+|.+.+++|.+...+.+. +...+..+++.+.+.+.... -.++ .|+..++..+-.++-.+. .+
T Consensus 205 D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~-l~le----~Ylh~Lip~vltclv~~~l~~~~~~~ 279 (343)
T cd08050 205 DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN-LHLE----PYLHQLIPSVLTCLVAKQLCSRPPDD 279 (343)
T ss_pred CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-CchH----HhHHHHHHHHHHHhhhHhhcCCCCCc
Confidence 455666667666665322 23334445555655544432 2232 677766655544432221 11
Q ss_pred CCc--cCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhhch
Q 003608 740 DGD--IEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE 780 (808)
Q Consensus 740 ~~~--~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~ 780 (808)
+.+ +..|++++..++.+++.......+.+...+.+.+.+++
T Consensus 280 ~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~ 322 (343)
T cd08050 280 NHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPK 322 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCC
Confidence 211 46899999999999998877788888888888888754
No 199
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=47.87 E-value=3.7e+02 Score=29.74 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=58.0
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCC-h-hHHHHHHHHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSD-Q-NNFRKALHSVV 506 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~-~-~~~~~~~~~ll 506 (808)
-++.|-++-.++|.+...+.+.. +..++...+.+.|++++..=|--|+.++..|+...-.. + .....+-+.+.
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~-----~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESS-----LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccch-----HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 46788889999999998875432 22333334566788888888999999999998642111 1 11245556666
Q ss_pred hcCCCCCCchHHhHHHHHHHHHH
Q 003608 507 SGLRDPELPVRVDSVFALRSFVE 529 (808)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~ 529 (808)
..|.++.+.....-...+.++-.
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ 197 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRT 197 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH
Confidence 66664443333333333333333
No 200
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=47.67 E-value=2.4e+02 Score=26.27 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHHHHHhhhCCCCCh-----hHHHHHHHHhchh---hHHHHHHHHHHHHHHcc
Q 003608 100 VPPLLRVQLGECLKTIIHADYPEQWP-----HLLDWVKHNLQDQ---QVYGALFVLRILSRKYE 155 (808)
Q Consensus 100 ~~~~i~~~~~~~i~~Ia~~d~p~~Wp-----~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~ 155 (808)
.|..|- ..++..+....-|+.|+ +++|.+..+++|. .+..||.+|..+++.|.
T Consensus 41 ~D~svl---vD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 41 NDPSVL---VDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred CCchHH---HHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 454443 66677677555567785 7999999999988 67899999999999863
No 201
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=46.30 E-value=57 Score=28.36 Aligned_cols=75 Identities=12% Similarity=0.249 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 003608 37 HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTII 116 (808)
Q Consensus 37 f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia 116 (808)
-...|.+++...+ |..+-..|+==+-.+|+.+=++. .-=++-..|..++++|.++++.||.+.-.|+.++.
T Consensus 44 llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr--------~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGR--------NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGH--------HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHH--------HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4568888885533 66677777777888888764431 11145678999999999999999999999999998
Q ss_pred hhhC
Q 003608 117 HADY 120 (808)
Q Consensus 117 ~~d~ 120 (808)
.+.|
T Consensus 115 ~~~w 118 (119)
T PF11698_consen 115 VNNW 118 (119)
T ss_dssp HHS-
T ss_pred HhcC
Confidence 8754
No 202
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=45.99 E-value=3.4e+02 Score=27.57 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCCCCCC----chHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccc
Q 003608 498 FRKALHSVVSGLRDPEL----PVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 573 (808)
Q Consensus 498 ~~~~~~~ll~~l~~~~~----~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~ 573 (808)
.-..+|.++..+.++++ .-...+|.+|...++..+ . +.+..++..+.+ ....+.-+.+..++..+.+
T Consensus 109 ~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-~----~~La~il~~ya~----~~fr~~~dfl~~v~~~l~~ 179 (262)
T PF14225_consen 109 LLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-L----PNLARILSSYAK----GRFRDKDDFLSQVVSYLRE 179 (262)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-C----ccHHHHHHHHHh----cCCCCHHHHHHHHHHHHHH
Confidence 45566777777765551 344577788888886532 2 234444443332 2223444445555555555
Q ss_pred cccc-hHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChh
Q 003608 574 EMAP-YALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ 652 (808)
Q Consensus 574 ~i~p-~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~ 652 (808)
...| |..+++..|.. +..+.. ...+...++.+..++..+.-.... ..+.+.|++... + .
T Consensus 180 ~f~P~~~~~~l~~Ll~----lL~n~~---------~w~~~~~L~iL~~ll~~~d~~~~~---~~dlispllrlL-~---t 239 (262)
T PF14225_consen 180 AFFPDHEFQILTFLLG----LLENGP---------PWLRRKTLQILKVLLPHVDMRSPH---GADLISPLLRLL-Q---T 239 (262)
T ss_pred HhCchhHHHHHHHHHH----HHhCCc---------HHHHHHHHHHHHHHhccccCCCCc---chHHHHHHHHHh-C---C
Confidence 4443 44555555554 544321 234567888888888887533221 124444554444 2 5
Q ss_pred hHHHHHHHHHHHhhhcC
Q 003608 653 EVFEEVLEIVSYMTFFS 669 (808)
Q Consensus 653 ~~~e~~l~ll~~~~~~~ 669 (808)
++..+|++++...+..+
T Consensus 240 ~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 240 DLWMEALEVLDEIVTRS 256 (262)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 78889999998887654
No 203
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.95 E-value=2.6e+02 Score=38.77 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh-------------HHH
Q 003608 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED-------------LVF 562 (808)
Q Consensus 496 ~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~-------------l~~ 562 (808)
+.+...++.++..+-+ +.+....|-.-+.+-.... .+...++.-++.-+.+..+.. ...
T Consensus 543 eIfe~~~p~iferi~~-n~~l~~i~n~~l~n~~ts~-------~fa~ill~fll~rl~e~gs~~~~~s~l~LrLFkl~F~ 614 (3550)
T KOG0889|consen 543 EIFETNSPFIFERILK-NNALFHIANTLLSNESTSV-------NFANILLSFLLSRLKELGSNDLLDSKLLLRLFKLIFG 614 (3550)
T ss_pred HHHHHhhHHHHHHHhc-cCcHHHHHHHHHhCcccch-------hHHHHHHHHHHHHHHHHccCccccchhhHhhhhhhhh
Q ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHH
Q 003608 563 TLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPI 642 (808)
Q Consensus 563 ~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~ 642 (808)
+..........-.+||.++++..-.. +..+..... ..+..+.+|+++++. ..+..++..++|+
T Consensus 615 sv~~f~~~nervl~phv~~Ii~~sme----la~~a~epl-----------nYf~LLraLFRsigG--g~~d~ly~e~lpl 677 (3550)
T KOG0889|consen 615 SVSKFPSENERVLRPHVHDIISTSME----LATTAPEPL-----------NYFQLLRALFRSIGG--GAFDSLYREVLPL 677 (3550)
T ss_pred hhhcccccchhhcccchhHHHHHHHH----HHhcCCcch-----------hHHHHHHHHHHHhhc--cchHhHHHHHHHH
Q ss_pred HHHHcc--------cChhhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhhccCccccc
Q 003608 643 MRRMLT--------TDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL 714 (808)
Q Consensus 643 i~~~l~--------~~~~~~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l 714 (808)
+..+++ .+..+..|--.++.-.+=-....+.|.+.-++..+..++++ +.+.+..+++.|+-.+..-..+++
T Consensus 678 L~~lLe~ln~l~~~~~s~~mkdLfvELclTvPvRLS~Llpylp~LM~PLv~aLkg-s~~lvsQgLRtlelcvDnltPefL 756 (3550)
T KOG0889|consen 678 LPNLLEILNHLLSSFHSQGMKDLFVELCLTLPVRLSSLLPYLPLLMKPLVFALKG-SPELVSQGLRTLELCVDNLTPEFL 756 (3550)
T ss_pred HHHHHHHHHHHhhccCccchHHHHHHHHHhhhHHHHHhhhhhhhhhhHHHHHhcC-CHHHHHHHHhHHHHHHhcCChHhh
Q ss_pred ccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHH
Q 003608 715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVV 753 (808)
Q Consensus 715 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~i 753 (808)
...-++....+++.+-+.+.+.- .++....|.++++.+
T Consensus 757 ~~~mepv~~~lmqaLw~~l~~~~-~~s~s~~a~rILGKl 794 (3550)
T KOG0889|consen 757 DPIMEPVRDDLMQALWSHLRPVP-NYSYSHRALRILGKL 794 (3550)
T ss_pred hHHHHHHHHHHHHHHHHhccCCC-CchHHHHHHHHHHhh
No 204
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=43.65 E-value=6.1e+02 Score=29.86 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=79.7
Q ss_pred HHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchHHH
Q 003608 502 LHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALG 581 (808)
Q Consensus 502 ~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~ 581 (808)
+.-++..|.+++..|...+-..+...+.... + +.++..|+...-+..+..++.+|..+ + .|+...
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~--~------~~l~~~l~~y~~~t~s~~~~~il~~~----~---~P~~K~ 70 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDR--E------PWLVNGLVDYYLSTNSQRALEILVGV----Q---EPHDKH 70 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccc--h------HHHHHHHHHHHhhcCcHHHHHHHHhc----C---CccHHH
Confidence 4456667777777787788777777776532 2 24566666654444444444444322 2 266666
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccCh-hhHHHHHHH
Q 003608 582 LCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG-QEVFEEVLE 660 (808)
Q Consensus 582 l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~-~~~~e~~l~ 660 (808)
++..|-..|.+ + . .+..++..++.+++. +-+-++.-++..+++-+-.|+..|. .-.+..|+-
T Consensus 71 ~~~~l~~~~~~--------~----~---~Rl~~L~Ll~~~v~~--qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~ 133 (668)
T PF04388_consen 71 LFDKLNDYFVK--------P----S---YRLQALTLLGHFVRS--QPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALL 133 (668)
T ss_pred HHHHHHHHHcC--------c----h---hHHHHHHHHHHHHhc--CCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHH
Confidence 66655542221 1 1 233445555555544 2233444445567777777876543 344556665
Q ss_pred HHHHhhhcCCCCChhhhhhHHHHHHH
Q 003608 661 IVSYMTFFSPTISLEMWSLWPLMMEA 686 (808)
Q Consensus 661 ll~~~~~~~~~~~p~l~~~~~~l~~~ 686 (808)
++..++ +.++..+-..+|.++.+
T Consensus 134 ~LimlL---P~ip~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 134 VLIMLL---PHIPSSLGPHLPDLFNI 156 (668)
T ss_pred HHHHHh---ccccchhhHHHHHHHHH
Confidence 555555 33333333334444444
No 205
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.87 E-value=74 Score=32.70 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=64.7
Q ss_pred hhhhhhhhhhhhhhccCcccccccCCch---HHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcC---c--ccc
Q 003608 693 DFFPNILVPLDNYISRGTAHFLTCKEPD---YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQ---V--DHW 764 (808)
Q Consensus 693 ~~~~~~~~~L~~~i~~~~~~~l~~~~~~---~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~---~--~~~ 764 (808)
+.-.+.+++|+..+...|+.|+.+..|+ .++.+.+++.++++.. ++. ..+...++...+.. + .|.
T Consensus 239 eLsvsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrV--t~e-----~~lf~rvv~~~~~~le~V~hypi 311 (489)
T KOG4692|consen 239 ELSVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRV--TDE-----FFLFVRVVRRQGQPLEKVSHYPI 311 (489)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhh--ccc-----cchhHHHHHhhcCChhhhcccch
Confidence 3445667788888888899888775553 5677777777777532 221 12444555554422 3 367
Q ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHHHHHhHhhChH
Q 003608 765 VEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSD 801 (808)
Q Consensus 765 l~~il~~~~~~l~~~~~~~~~~~~~~~i~~~~~~n~~ 801 (808)
+...+..+++-|...+.+..|....-+...++.-+|.
T Consensus 312 l~a~~GIll~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~ 348 (489)
T KOG4692|consen 312 LAALVGILLNLLEASEDSKPRQQHDVIGLFASLDDPD 348 (489)
T ss_pred HHHHHHHHHHHHHhCcccCcccchhhhhhheeccCcc
Confidence 8888888888888766666555555555555555554
No 206
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=41.95 E-value=4.5e+02 Score=30.46 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChhhh-hhHHHHHHHh-hhh
Q 003608 613 GCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMW-SLWPLMMEAL-ADW 690 (808)
Q Consensus 613 ~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~l~-~~~~~l~~~~-~~~ 690 (808)
-+++-+..|.+.+.. + .+.+.++|++..+++......-+.+++++..+....+ -+.+. .++|.+.++. ...
T Consensus 369 ~i~e~mdlL~~Kt~~--e---~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 369 FILENMDLLKEKTPP--E---EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred hHHhhHHHHHhhCCh--H---HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhccc
Confidence 456666666666532 2 2447888988888887777788888888888876543 22332 4677776662 233
Q ss_pred HHhhhhhhhhhhhhhh
Q 003608 691 AIDFFPNILVPLDNYI 706 (808)
Q Consensus 691 ~~~~~~~~~~~L~~~i 706 (808)
......+++.++..++
T Consensus 442 ~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLI 457 (700)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4445555555555554
No 207
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=41.91 E-value=52 Score=23.10 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhh
Q 003608 85 DKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHAD 119 (808)
Q Consensus 85 ~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d 119 (808)
+.+++|+.+++.|...+.. |.++.-+|+.+.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999999766655 888888888887643
No 208
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=41.57 E-value=8.1e+02 Score=30.72 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=51.4
Q ss_pred cchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhh
Q 003608 474 GHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 553 (808)
Q Consensus 474 ~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~ 553 (808)
.-+|..+.|.++.+-+.. ++......+..+.+.+..++=.+|-....+++.++... .+.+...++.++.....-++
T Consensus 143 apVre~caq~L~~~l~~~--~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air--~d~l~~~~~~vl~~~i~~L~ 218 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHM--DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIR--QDLLFQLLNLVLDFVIEGLE 218 (1549)
T ss_pred hhhHHHHHHHHHHHHHhh--hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhh
Confidence 368999999999987654 55667888888888776665556666667777766632 34444455555555555555
Q ss_pred hh
Q 003608 554 EV 555 (808)
Q Consensus 554 ~~ 555 (808)
..
T Consensus 219 ds 220 (1549)
T KOG0392|consen 219 DS 220 (1549)
T ss_pred hc
Confidence 43
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=41.55 E-value=5.1e+02 Score=31.10 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhh-hhchhh---HHHHHHHHHHhc
Q 003608 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN-EVENED---LVFTLETIVDKF 571 (808)
Q Consensus 496 ~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~-~~~~~~---l~~~l~~iv~~~ 571 (808)
+.+..+-+.+-..+.+++-.=|..|...+...+++.. ....+-...++..++.... +++... ...++..+...+
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 3455555566666667777778899888888888752 2333333444444444332 222222 234566677778
Q ss_pred cccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccCh
Q 003608 572 GEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG 651 (808)
Q Consensus 572 ~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~ 651 (808)
+..+.+|+..+...+...+.. .+.. +.+++...++++.... -...+.+.|...+.+..
T Consensus 327 r~~~~~~~~~v~p~lld~lke-------------kk~~----l~d~l~~~~d~~~ns~-----~l~~~~~~I~e~lk~kn 384 (815)
T KOG1820|consen 327 RPLFRKYAKNVFPSLLDRLKE-------------KKSE----LRDALLKALDAILNST-----PLSKMSEAILEALKGKN 384 (815)
T ss_pred chhhHHHHHhhcchHHHHhhh-------------ccHH----HHHHHHHHHHHHHhcc-----cHHHHHHHHHHHhcCCC
Confidence 888888887777666552211 1222 2333333333332211 01456666666676666
Q ss_pred hhHHHHHHHHHHHhhhcCC---CCChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhh
Q 003608 652 QEVFEEVLEIVSYMTFFSP---TISLEMWSLWPLMMEALADWAIDFFPNILVPLDN 704 (808)
Q Consensus 652 ~~~~e~~l~ll~~~~~~~~---~~~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 704 (808)
.....++..++...++..+ ...+.+..+.|.++...++.+.++-.....++-.
T Consensus 385 p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 385 PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAA 440 (815)
T ss_pred hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHH
Confidence 6777777777777776554 2234466777777777655455555444444443
No 210
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=41.21 E-value=1.7e+02 Score=33.65 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=56.6
Q ss_pred cchhhHHHHHHHHHHHHHHhh-cCCc----chHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLK-QTEP----YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKAL 502 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~-~~~~----~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~ 502 (808)
.....+.+++.++|++..... .... ....+.+.+...+....+..+..-+-.++..||..+.- ..+
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~---------~~i 479 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP---------SSI 479 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh---------hHH
Confidence 366899999999999998533 3221 11234444443332222223334456667778776531 112
Q ss_pred HHHHhcCC-C--CCCchHHhHHHHHHHHHHhccccccccc
Q 003608 503 HSVVSGLR-D--PELPVRVDSVFALRSFVEACRDLNEIRP 539 (808)
Q Consensus 503 ~~ll~~l~-~--~~~~V~~~A~~al~~~~~~~~~~~~l~p 539 (808)
..+...+. + .+..+|..|+.||.++...+ +..+++
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~--p~~v~~ 517 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKRD--PRKVQE 517 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC--chHHHH
Confidence 22222222 2 34569999999999887654 344443
No 211
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=40.99 E-value=1.4e+02 Score=24.29 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=38.2
Q ss_pred hcCChHHHHHHHHHHHHHHhhhCC---CCChhHHHHHHHHhchh---hHHHHHHHHH
Q 003608 98 AQVPPLLRVQLGECLKTIIHADYP---EQWPHLLDWVKHNLQDQ---QVYGALFVLR 148 (808)
Q Consensus 98 ~~~~~~i~~~~~~~i~~Ia~~d~p---~~Wp~ll~~l~~~l~s~---~~~~~L~~L~ 148 (808)
..++..+|..+-.|+..+...-.. ..|+.++..+-....++ -+..|..++.
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 356788999999999999886554 57999999888877654 3455665554
No 212
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.71 E-value=2.2e+02 Score=33.44 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHhhhccccCC-hh-HHHHHHHHHHhcCC-CCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHH
Q 003608 474 GHLRAKAAWVAGQYAHINFSD-QN-NFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFK 550 (808)
Q Consensus 474 ~~lr~~a~~~l~~~~~~~~~~-~~-~~~~~~~~ll~~l~-~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ 550 (808)
+--|-.++-++|.|....... .. .-..+++.++.||. |.+.+|-..|..+|..++... +..+.+|++.++..+..
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i--p~~l~~~L~~Lf~If~R 159 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI--PSSLGPHLPDLFNIFGR 159 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc--cchhhHHHHHHHHHHHH
Confidence 456778888888886421100 01 12367778888876 788888899999999999885 78999999999999999
Q ss_pred Hhh
Q 003608 551 LMN 553 (808)
Q Consensus 551 ll~ 553 (808)
++.
T Consensus 160 l~~ 162 (668)
T PF04388_consen 160 LLS 162 (668)
T ss_pred HHH
Confidence 984
No 213
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=38.91 E-value=78 Score=24.85 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCcchH--HHHHHHhhcccccccCCCcchhhHHHHHHHhhhcc
Q 003608 432 QKDGALLAIGALCDKLKQTEPYKS--ELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHI 490 (808)
Q Consensus 432 ~~ea~l~~lg~~a~~l~~~~~~~~--~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~ 490 (808)
.+.++++++|.++..-... .+.+ ++.+.+.+. .-+++..-+|+.|++++|-++..
T Consensus 3 ~lKaaLWaighIgss~~G~-~lL~~~~iv~~iv~~---a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI-QLLDESDIVEDIVKI---AENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHHhHhcChHHH-HHHhhcCHHHHHHHH---HHhCCccchHHHHHHHHHHHhCC
Confidence 5679999999987542110 0100 111212111 11256778999999999999863
No 214
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=38.58 E-value=2.6e+02 Score=25.70 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=51.9
Q ss_pred hHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch----h---hHHHHHHHHHHhccccccchHHHHHHHHHH
Q 003608 516 VRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN----E---DLVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 516 V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~----~---~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
|-..+..|+..++-.. ....++|..-.+++--..-+.+.+. + .....+..+.+.++.-++||+.-++...++
T Consensus 37 vE~~v~~~~~~lV~KL-nE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 37 VESSVISAFVSLVLKL-NEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHc-ccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666777776665 4788888888877765442222211 1 256778888899999899999999988886
Q ss_pred HHHH
Q 003608 589 AFWR 592 (808)
Q Consensus 589 ~~~~ 592 (808)
.+.+
T Consensus 116 ~L~~ 119 (153)
T PF08146_consen 116 LLKQ 119 (153)
T ss_pred HHHH
Confidence 4333
No 215
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=37.69 E-value=4.3e+02 Score=26.38 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHH----Hh-----cCChHHHHHHHHHHHHHHhhhCCC-----CChhHHHHHHHHhchh---hHHHHHHHH
Q 003608 85 DKDMVRDHILVF----VA-----QVPPLLRVQLGECLKTIIHADYPE-----QWPHLLDWVKHNLQDQ---QVYGALFVL 147 (808)
Q Consensus 85 ~k~~ir~~ll~~----l~-----~~~~~i~~~~~~~i~~Ia~~d~p~-----~Wp~ll~~l~~~l~s~---~~~~~L~~L 147 (808)
-+.++|..+.-. |. .+..-+|...--+|+.+++.|-.+ .|.+++|..+..+.++ ..-.|..++
T Consensus 113 r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIl 192 (293)
T KOG3036|consen 113 RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFIL 192 (293)
T ss_pred HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHH
Confidence 455666655443 32 234567877777888888877543 5888888888888776 345667777
Q ss_pred HHHHHHcccCCcCCcchHHHHHHHHh---HHHHHHHHHHhcccCCChhHHHHHHHHHHHhHHhh
Q 003608 148 RILSRKYEFKSDEERTPVYRIVEETF---HHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSI 208 (808)
Q Consensus 148 ~~i~~~~~~~~~~~~~~~~~~~~~~~---p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~ 208 (808)
.+|.-+ +.+-..+.+..+.++ -.+-++..++... .+...++-+++||-++.
T Consensus 193 qKIlld-----D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~-----ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 193 QKILLD-----DVGLYYICQTAERFSAVALVLGKMVFQLVSM-----PSPRLLKHVIRCYLRLS 246 (293)
T ss_pred HHHhhc-----cccHHHHHHhHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHhc
Confidence 776643 222111222222211 1222233333322 23567788889987664
No 216
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.61 E-value=53 Score=34.21 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=59.7
Q ss_pred CCCcchhhHHHHHHHhhhcccc-CChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHH
Q 003608 471 SPVGHLRAKAAWVAGQYAHINF-SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFF 549 (808)
Q Consensus 471 ~~~~~lr~~a~~~l~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~ 549 (808)
+.+..+|+-+.-.+.......- +..-....-++.+++.+...++.||++++.|+.++.-+...+..+..--|.++..|.
T Consensus 178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv 257 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALV 257 (550)
T ss_pred cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHH
Confidence 4556666666655544432110 001124456788899998889999999999999987554346667667778889999
Q ss_pred HHhhhhchh
Q 003608 550 KLMNEVENE 558 (808)
Q Consensus 550 ~ll~~~~~~ 558 (808)
.++...+..
T Consensus 258 ~Lmd~~s~k 266 (550)
T KOG4224|consen 258 DLMDDGSDK 266 (550)
T ss_pred HHHhCCChH
Confidence 999876543
No 217
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=36.13 E-value=22 Score=21.57 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=10.5
Q ss_pred hhhHHHHHHHhhhc
Q 003608 476 LRAKAAWVAGQYAH 489 (808)
Q Consensus 476 lr~~a~~~l~~~~~ 489 (808)
+|..|.|.+|++.+
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57888899988764
No 218
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=35.78 E-value=1.8e+02 Score=24.06 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003608 51 DLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLK 113 (808)
Q Consensus 51 ~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~ 113 (808)
.-.+|-+||-.++..++++=+ -.+.-|..|-+.+.+.+.++.+.+.+.++.+.+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~---------~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~g 72 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSS---------SYPTLQPRITRTLLKALLDPKKPLGTHYGAIVG 72 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhcc---------ccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 457999999999998766433 234567788888888888888888888777655
No 219
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=35.68 E-value=47 Score=20.45 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=11.6
Q ss_pred chhhHHHHHHHhhh
Q 003608 475 HLRAKAAWVAGQYA 488 (808)
Q Consensus 475 ~lr~~a~~~l~~~~ 488 (808)
.+|.+|.+.+|++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 57899999999874
No 220
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=35.63 E-value=33 Score=23.48 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCCCchHHhHHHHH
Q 003608 498 FRKALHSVVSGLRDPELPVRVDSVFAL 524 (808)
Q Consensus 498 ~~~~~~~ll~~l~~~~~~V~~~A~~al 524 (808)
...+...+...+.|+++.||.+|...+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 357888888999999999999987653
No 221
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.58 E-value=3.2e+02 Score=27.69 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccc
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGE 573 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~ 573 (808)
+-.+++..++..|.....-+|.....-|+.++...+.+ +|+.++++.-+++++++.-..+...+++.++..-+.
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~---~~~~~dlispllrlL~t~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR---SPHGADLISPLLRLLQTDLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC---CCcchHHHHHHHHHhCCccHHHHHHHHHHHHhhccc
Confidence 44677778888887666679999999999999876422 568889999999999876666788888888876654
No 222
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=35.21 E-value=1.6e+02 Score=28.51 Aligned_cols=98 Identities=21% Similarity=0.196 Sum_probs=64.0
Q ss_pred cchhhHHHH-HHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHH
Q 003608 428 KPYRQKDGA-LLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVV 506 (808)
Q Consensus 428 ~~~~~~ea~-l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll 506 (808)
.+|-..|.. -.++|.....- +.....+..| ..+++++.|+.++.++-.+... .....++..+-
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~---~~~~~~~~~W--------~~s~~~w~rR~~~v~~~~~~~~-----~~~~~~l~~~~ 161 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH---PEALELLEKW--------AKSDNEWVRRAAIVMLLRYIRK-----EDFDELLEIIE 161 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH---GGHHHHHHHH--------HHCSSHHHHHHHHHCTTTHGGG-----CHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHhh---HHHHHHHHHH--------HhCCcHHHHHHHHHHHHHHHHh-----cCHHHHHHHHH
Confidence 589888887 55556543221 1122233333 3477899998887776544332 45688888888
Q ss_pred hcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 507 SGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 507 ~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
..+.|++.-||.+.+.+|..+.... ++.+.+|+..
T Consensus 162 ~~~~d~~~~vq~ai~w~L~~~~~~~--~~~v~~~l~~ 196 (213)
T PF08713_consen 162 ALLKDEEYYVQKAIGWALREIGKKD--PDEVLEFLQK 196 (213)
T ss_dssp HCTTGS-HHHHHHHHHHHHHHCTT---HHHHHHHHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHhC--HHHHHHHHHH
Confidence 8899988889999999999887653 5555555544
No 223
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=34.45 E-value=6e+02 Score=30.53 Aligned_cols=139 Identities=10% Similarity=0.155 Sum_probs=91.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHh
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVS 507 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~ 507 (808)
.|....--+...++.++..+... +.... ....+.++..+....+.+|..+.-++-.++... .+..+.+.++.
T Consensus 307 aN~~v~~~aa~~l~~ia~~lr~~--~~~~~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-----~l~~~~~~I~e 378 (815)
T KOG1820|consen 307 ANINVVMLAAQILELIAKKLRPL--FRKYA-KNVFPSLLDRLKEKKSELRDALLKALDAILNST-----PLSKMSEAILE 378 (815)
T ss_pred cchhHHHHHHHHHHHHHHhcchh--hHHHH-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHH
Confidence 35666666777788888877552 11111 111112222333456788888888887776522 36788899999
Q ss_pred cCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchhh---HHHHHHHHHHhcccc
Q 003608 508 GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENED---LVFTLETIVDKFGEE 574 (808)
Q Consensus 508 ~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~ 574 (808)
.+.+.++.++......+.+.+...........-+..+...+....++.+.+- ...++..++..+|++
T Consensus 379 ~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 379 ALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred HhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999998889998887753344556677788888888777665542 456666666666654
No 224
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=34.28 E-value=5.6e+02 Score=26.72 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCC-CCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhchh---hHHHHHHHHHHhcccc
Q 003608 499 RKALHSVVSGLRDP-ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENE---DLVFTLETIVDKFGEE 574 (808)
Q Consensus 499 ~~~~~~ll~~l~~~-~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~~---~l~~~l~~iv~~~~~~ 574 (808)
..+-..+.+||+.. ...|+..|...-..+++.. .++.+...++-....|+.+++.+... .+...++..+-..+..
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~i-g~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~ 131 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERI-GPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPA 131 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhc-CHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHH
Confidence 44556666676532 3358888888888888876 47778888888888888888876543 3555666655555666
Q ss_pred ccchHHHHHHHHH
Q 003608 575 MAPYALGLCQNLA 587 (808)
Q Consensus 575 i~p~~~~l~~~L~ 587 (808)
+.|....++..+.
T Consensus 132 L~p~l~~li~slL 144 (307)
T PF04118_consen 132 LRPCLKGLILSLL 144 (307)
T ss_pred HHHHHHHHHHHhc
Confidence 6665555554443
No 225
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=34.03 E-value=4.2e+02 Score=25.18 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhccc-----CCCCC------CCcchhhHHHHHHHHHHHHHHhhc-----
Q 003608 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY-----DETPV------EYKPYRQKDGALLAIGALCDKLKQ----- 449 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~-----~~~~~------~~~~~~~~ea~l~~lg~~a~~l~~----- 449 (808)
.|.+|..+|.++++..++..+ .+|-...+.+. ...+. .+.+.+.|-+++.++..+=++.+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l---~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSL---FGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCcee---HhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 689999999999999554433 23333344332 00110 135789999999999998877531
Q ss_pred ---C---C---cchHHHHHHHhh---ccccccc-CCCcchhhHHHHHHHhhhccc-cC--ChhHHHHHHHHHHhcCCCCC
Q 003608 450 ---T---E---PYKSELERMLVQ---HVFPEFS-SPVGHLRAKAAWVAGQYAHIN-FS--DQNNFRKALHSVVSGLRDPE 513 (808)
Q Consensus 450 ---~---~---~~~~~l~~~l~~---~v~~~l~-~~~~~lr~~a~~~l~~~~~~~-~~--~~~~~~~~~~~ll~~l~~~~ 513 (808)
. . ++...+..++.+ .+.-.++ ..++-+-...+.+++...... |. +.+++..++..+...+.+.|
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 0 0 122223232221 1222233 234555667788887775432 11 23678888888888888888
Q ss_pred CchHHhHHHHHHHHHHhc
Q 003608 514 LPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 514 ~~V~~~A~~al~~~~~~~ 531 (808)
..|+..|..++..++...
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 889999999999888653
No 226
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=33.95 E-value=75 Score=35.91 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=42.6
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCCh-----hHHHHH-HHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 469 FSSPVGHLRAKAAWVAGQYAHINFSDQ-----NNFRKA-LHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 469 l~~~~~~lr~~a~~~l~~~~~~~~~~~-----~~~~~~-~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
+.++.+-+|+.+.|++-... |... +.+..+ .+.+....+|++.+|+..+..-++++..++
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~---f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLM---FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred hcCCCchHHHHHHHHHHHHH---hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 34567789999999995532 2222 223333 445556678999999999999999998775
No 227
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=33.22 E-value=1.3e+02 Score=26.46 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=37.3
Q ss_pred hhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 486 QYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
..+++.+.++..+..++..+...|++.++.|+..|...|..+|...
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 3334444565668899999999999988999999999999999874
No 228
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=31.26 E-value=6.9e+02 Score=26.84 Aligned_cols=239 Identities=12% Similarity=0.136 Sum_probs=105.3
Q ss_pred cccccccCCCcchhhHHHHHHHhhhc----ccc---CChhHHHHHHHHHHhc--C-CCCCCc--hHHhHHHHHHHHHHhc
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQYAH----INF---SDQNNFRKALHSVVSG--L-RDPELP--VRVDSVFALRSFVEAC 531 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~~~----~~~---~~~~~~~~~~~~ll~~--l-~~~~~~--V~~~A~~al~~~~~~~ 531 (808)
+|.|.+....+-...+..|++|.... ..+ ++...+..++..++=- + .+..++ +-...-..+..+++..
T Consensus 73 ~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~llytksk~~cll~~~vd~llLp~~l~~~k~l~~~l~~ai~k~lpl~lqGl 152 (373)
T PF14911_consen 73 WIKPYLKSKSSEGLQRIYRVLGILVKHCSPLLYTKSKSQCLLFRIVDCLLLPTVLQQDKPLPPALLQAIRKSLPLFLQGL 152 (373)
T ss_pred HcCCccccCCHHHHHHHHHHHHHHHHhcchhheecCccccHHHHHHHHhcccccccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 45566655567777888999987543 111 1223444444444322 1 122221 2222223333333322
Q ss_pred c-----cccccccchHHHHHHHHHHhhhhchhh-HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 003608 532 R-----DLNEIRPILPQLLDEFFKLMNEVENED-LVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADD 605 (808)
Q Consensus 532 ~-----~~~~l~p~l~~ll~~l~~ll~~~~~~~-l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~ 605 (808)
. ....+...+..++.+++.-.--.++.. ... +........+...++..-+++.+...|++.-. .. +
T Consensus 153 ~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~-l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~-~~--p---- 224 (373)
T PF14911_consen 153 GRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVAR-LSTLLSAFTPRNEELRKFILQVIRSNFLEFKG-SA--P---- 224 (373)
T ss_pred HhcccccChHHHHHHHHHHHHHHhHhccCCCcccccc-ccccccchhhhhhHHHHHHHHHHHHHHhcCCC-CC--C----
Confidence 1 233444445555555544433222211 111 11111122222333444455555555554322 11 1
Q ss_pred hhHHHHHHHHHHHHHHHHhhc-CChHHHHHHHhhHHHHHHHH-cc-cChhhHHHHHHHHHHHhhhcCC-CCChhhhhhHH
Q 003608 606 PGALAAVGCLRAISTILESVS-RLPHLFVQIEPTLLPIMRRM-LT-TDGQEVFEEVLEIVSYMTFFSP-TISLEMWSLWP 681 (808)
Q Consensus 606 ~~~~~~~~~l~~i~~li~~~~-~~~~~~~~~~~~~~p~i~~~-l~-~~~~~~~e~~l~ll~~~~~~~~-~~~p~l~~~~~ 681 (808)
.+ ....++..+..+++.+. ++......+.+.+.|-+-.+ +- +|....-.-+.+++..+++.+. .-+....+.+.
T Consensus 225 -~p-~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~ 302 (373)
T PF14911_consen 225 -PP-RLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLT 302 (373)
T ss_pred -CC-cHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHH
Confidence 01 23356777777777752 22223333445555544444 32 2344455667777777777654 21222233333
Q ss_pred HHHHH-hhhhHHhhhhhhhhhhhhhhccCccc
Q 003608 682 LMMEA-LADWAIDFFPNILVPLDNYISRGTAH 712 (808)
Q Consensus 682 ~l~~~-~~~~~~~~~~~~~~~L~~~i~~~~~~ 712 (808)
..++. .++...-|-...+.+++.....+|+.
T Consensus 303 s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~l 334 (373)
T PF14911_consen 303 SVLRSFVQKYLAHYTYQYFQFLEKVAELDPQL 334 (373)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHH
Confidence 33333 23333444455566666555555543
No 229
>PHA01351 putative minor structural protein
Probab=31.23 E-value=5.9e+02 Score=29.31 Aligned_cols=27 Identities=4% Similarity=0.030 Sum_probs=13.6
Q ss_pred HHHHHHcCcCcccchHHHHHHHHHHHh
Q 003608 751 EVVFQNCKGQVDHWVEPYLRITVERLR 777 (808)
Q Consensus 751 ~~ii~~~~~~~~~~l~~il~~~~~~l~ 777 (808)
+.++...++...+++.++-+-++..++
T Consensus 213 g~i~k~~~e~~~d~lkdi~de~~tt~k 239 (1070)
T PHA01351 213 GEIIKAFAETSVDFLNEIRDELATTLK 239 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555544
No 230
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=31.12 E-value=85 Score=28.50 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccch--HHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 003608 722 QQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV--EPYLRITVERLRRAEKSYLKCLLVQVVS 793 (808)
Q Consensus 722 ~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l--~~il~~~~~~l~~~~~~~~~~~~~~~i~ 793 (808)
....+..+.+-+.+++ ...+..|..|+++++.+||..+-..+ ..+++.+...+....+..++..++++|-
T Consensus 35 ~k~a~ral~KRl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 35 AKDCLKAIMKRLNHKD--PNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3444566666666543 22356789999999999997543222 2355555555554466677777666553
No 231
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.87 E-value=1.6e+02 Score=30.33 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=60.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCCh--hHHHHHHHHH
Q 003608 428 KPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQ--NNFRKALHSV 505 (808)
Q Consensus 428 ~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~--~~~~~~~~~l 505 (808)
.+|..+--++..+..++..=.+. ....+...+. .|...+.++..-+.+.||.+++-..+.. .+. +.+...+..+
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~--l~~~L~~vii-~vvkslKNlRS~VsraA~~t~~difs~l-n~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPES--LNPMLHEVII-AVVKSLKNLRSAVSRAACMTLADIFSSL-NNSIDQELDDLVTQL 175 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHH--HHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 58999999999999888653321 1223333322 2344555666678888999988754322 111 2223333333
Q ss_pred HhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 506 VSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 506 l~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
+..=.+.+--|+..|-.||..+..+.
T Consensus 176 l~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 176 LHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred HhhhcccchHHHHHHHHHHHHHHhcc
Confidence 32222334559999999999999875
No 232
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=30.76 E-value=4.3e+02 Score=25.25 Aligned_cols=152 Identities=9% Similarity=0.098 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccc--------ccccc--------------------------
Q 003608 494 DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDL--------NEIRP-------------------------- 539 (808)
Q Consensus 494 ~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~--------~~l~p-------------------------- 539 (808)
+++...+++..+++.--+.-..||..|+.++..++ ..... +.+..
T Consensus 1 ~~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll-~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL 79 (193)
T PF12612_consen 1 SPELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLL-HSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLL 79 (193)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHh
Q ss_pred ----chHHHHHHHHHHhhhhchhhHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHH
Q 003608 540 ----ILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG--EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVG 613 (808)
Q Consensus 540 ----~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~--~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~ 613 (808)
|-..++.++.--....+....-.+-.+++..+. +.-..-...++..+.. ++++...++ .....
T Consensus 80 ~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~----il~~~~~~d-------Rv~vP 148 (193)
T PF12612_consen 80 DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLS----ILKENLRND-------RVVVP 148 (193)
T ss_pred ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH----HHHHhCCCC-------Ceeec
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCC
Q 003608 614 CLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTIS 673 (808)
Q Consensus 614 ~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~ 673 (808)
+++++..++..-. +..+...+...+.+..+.+...-.++++.+.
T Consensus 149 ~l~tl~~Ll~~~~----------------~~~~~~~~~~~~~~~L~~~~~~e~~~s~nv~ 192 (193)
T PF12612_consen 149 LLKTLDFLLSSGV----------------FDSLPEDSDSPFLRKLFDLVQKEHKKSKNVQ 192 (193)
T ss_pred HHHHHHHHHhCcc----------------hhcccccccchHHHHHHHHHHHHHhhcCCCC
No 233
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.67 E-value=1.2e+03 Score=29.61 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=52.0
Q ss_pred HHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhhchhhHHHHHHHHHHHHhHhhChHHHHHhh
Q 003608 728 MVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVI 807 (808)
Q Consensus 728 ~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~~~~i~~~~~~n~~~~~~~~ 807 (808)
++.+++... .+....|..+...++..|+..+.+.+..++...+..-.. .....+....++|...=.++|++-+.+|
T Consensus 186 ll~~lv~~~---~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~ll~~vi 261 (1266)
T KOG1525|consen 186 LLENLVKPG---RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQLLLAVI 261 (1266)
T ss_pred HHHHhccCC---CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHHHHHHHH
Confidence 445666432 222457889999999999988877777776655544332 4455667778888888888888766543
No 234
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=29.90 E-value=97 Score=26.15 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccc-cccchHHHHHHHHHHhhhh
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE-IRPILPQLLDEFFKLMNEV 555 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~-l~p~l~~ll~~l~~ll~~~ 555 (808)
+...++..+...|..-.+.||..|..-|.-+++.+ ++. +..+...+++.++.++...
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~--p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHA--PDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHC--ChHhHhhhHHHHHHHHHHHHCCC
Confidence 45556666666666666779999999999999997 444 6778888999999888764
No 235
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.60 E-value=4e+02 Score=24.71 Aligned_cols=62 Identities=8% Similarity=0.175 Sum_probs=42.7
Q ss_pred CchhHHHHHHHHHcCcCcccchHHHHHHHHHHHhhch--hhHHHHHHHHHHHHhHhhChHHHHHh
Q 003608 744 EPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE--KSYLKCLLVQVVSFHERANSDLSIIV 806 (808)
Q Consensus 744 ~~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~~~--~~~~~~~~~~~i~~~~~~n~~~~~~~ 806 (808)
..+.+++..++.++...+..-++.++..++.++-..+ ...-|..++|++-. +..+|+..+.+
T Consensus 91 ~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~-l~~~p~~l~~l 154 (168)
T PF12783_consen 91 SRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRE-LCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-HHhChhHHHHH
Confidence 3567888888888777667777788888888665433 23567777777665 55688766543
No 236
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=29.56 E-value=5.7e+02 Score=29.74 Aligned_cols=114 Identities=9% Similarity=0.131 Sum_probs=69.5
Q ss_pred HHHHhcc-cchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccccccc----
Q 003608 396 ELVRKRG-KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS---- 470 (808)
Q Consensus 396 ~l~~~~~-~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~---- 470 (808)
.|.++.+ +++.+.+++++...+.. .+....|.++..+..+++.+.- ++..+.|+|.+.
T Consensus 376 lL~~Kt~~e~~~~~IlplL~~S~~~--------~~~~iQ~~~L~~lptv~e~iD~---------~~vk~~ilP~l~~l~~ 438 (700)
T KOG2137|consen 376 LLKEKTPPEEVKEKILPLLYRSLED--------SDVQIQELALQILPTVAESIDV---------PFVKQAILPRLKNLAF 438 (700)
T ss_pred HHHhhCChHHHHHHHHHHHHHHhcC--------cchhhHHHHHHhhhHHHHhccH---------HHHHHHHHHHhhcchh
Confidence 3445543 45667777777666653 4778999999999999987632 333444455443
Q ss_pred -CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHH
Q 003608 471 -SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFV 528 (808)
Q Consensus 471 -~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~ 528 (808)
..+..+|-.++-|++.+.+-. +.......+..++.+.+..++.+...-.....++.
T Consensus 439 ~tt~~~vkvn~L~c~~~l~q~l--D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 439 KTTNLYVKVNVLPCLAGLIQRL--DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred cccchHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 356788899999999887532 22223334444555655555555444444444444
No 237
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.12 E-value=69 Score=37.38 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=52.2
Q ss_pred chhhHHHHHHHHHHHHHHhhcCC-----------cchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhH
Q 003608 429 PYRQKDGALLAIGALCDKLKQTE-----------PYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNN 497 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~-----------~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~ 497 (808)
+...+.+|+.++|++........ .....+.+.+...+.......+..-+--++..+|..+.
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------- 519 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------- 519 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------
Confidence 45789999999999998754431 11112222222222111122333445566777776542
Q ss_pred HHHHHHHHHhcCCCC---CCchHHhHHHHHHHHHHhc
Q 003608 498 FRKALHSVVSGLRDP---ELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 498 ~~~~~~~ll~~l~~~---~~~V~~~A~~al~~~~~~~ 531 (808)
...++.+...+.+. +..+|..|+.|+.++...+
T Consensus 520 -~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 520 -PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp -GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred -chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 23456666666654 4569999999999875543
No 238
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=29.00 E-value=8.1e+02 Score=26.94 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccCCCCCCcCCCCChh--HHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003608 35 PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQV--DKDMVRDHILVFVAQVPPLLRVQLGECL 112 (808)
Q Consensus 35 p~f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~~~~~~~~~~l~~e--~k~~ir~~ll~~l~~~~~~i~~~~~~~i 112 (808)
|.+...+++++... ...++.+.....+--.+...=.... .+-+. .+...=...+..|..++.-|....+.++
T Consensus 52 ~~y~~~~l~ll~~~-~~~d~vqyvL~Li~dll~~~~~~~~-----~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 52 GQYVKTFVNLLSQI-DKDDTVRYVLTLIDDMLQEDDTRVK-----LFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhchHHHH-----HHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 67888999988764 4677888777777666655211000 00000 0001113344455678899999999999
Q ss_pred HHHHhhhCCCCChhHH----HHHHHHhchh----hHHHHHHHHHHHHHH
Q 003608 113 KTIIHADYPEQWPHLL----DWVKHNLQDQ----QVYGALFVLRILSRK 153 (808)
Q Consensus 113 ~~Ia~~d~p~~Wp~ll----~~l~~~l~s~----~~~~~L~~L~~i~~~ 153 (808)
+.++...--..=...+ +.+.+.+.++ .+..|+.+|..+++.
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~ 174 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV 174 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC
Confidence 9998754222122233 3444444332 467778888888764
No 239
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.64 E-value=1.6e+02 Score=28.05 Aligned_cols=65 Identities=25% Similarity=0.211 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc----CCC-hHHHHHHHHHhcCcChhhHHHHHHHHHHHHhhccC
Q 003608 5 SLALILQGALSPNPEERKAAEHSLNQFQY----TPQ-HLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWA 71 (808)
Q Consensus 5 ~l~~~l~~~ls~d~~~r~~Ae~~L~~~~~----~p~-f~~~L~~i~~~~~~~~~vR~~A~i~lKn~i~~~W~ 71 (808)
-+.++|+.++++|..+|..|=+-+...-+ +|. ...+|..+.++ .+..+|..|.-.++..-.+|=+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts--~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS--PNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC--CChHHHHHHHHHHHHHHHHhHH
Confidence 36788999999999999999888886653 564 56777776665 4678999999999888877644
No 240
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=28.07 E-value=78 Score=30.10 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHH
Q 003608 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l 548 (808)
...+...+.+|.... ....++.+-.... +..||.+|+..|..+ ..+.+.-|++++++.|
T Consensus 61 ~~e~~~ll~~W~~~~------~~~aL~LL~~~~~--~~~Vr~yAV~~L~~~-----~d~~l~~yLpQLVQaL 119 (184)
T smart00145 61 VAQALSLLKKWAPLD------PEDALELLSPKFP--DPFVRAYAVERLESA-----SDEELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHcCCCCC------HHHHHHHhCccCC--CHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 241
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=28.01 E-value=1.2e+02 Score=27.56 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccch--HHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 003608 723 QSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV--EPYLRITVERLRRAEKSYLKCLLVQVVS 793 (808)
Q Consensus 723 ~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l--~~il~~~~~~l~~~~~~~~~~~~~~~i~ 793 (808)
......+.+-|..++ ...+..|..+++.++.+||..+-..+ ..+++.+...+....+..++..++++|-
T Consensus 40 k~a~ral~krl~~~n--~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 40 KYAMRALKKRLLSKN--PNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 334456666665543 23357889999999999987543222 2355555554444556677777766654
No 242
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=27.99 E-value=5.3e+02 Score=24.50 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=56.5
Q ss_pred cccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHH
Q 003608 468 EFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDE 547 (808)
Q Consensus 468 ~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~ 547 (808)
...++++-+|..|+.+++.....-+-+| ...++.++....|+++.+|..|...+..+.+.. +..+..-..+-+..
T Consensus 16 ~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~--~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 16 LCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH--ESLVESRYSEGIRL 90 (187)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 3346788999999999988765444455 668888888888999999999999999888764 33343333334444
Q ss_pred HHHHhh
Q 003608 548 FFKLMN 553 (808)
Q Consensus 548 l~~ll~ 553 (808)
-+..-.
T Consensus 91 af~~~~ 96 (187)
T PF12830_consen 91 AFDYQR 96 (187)
T ss_pred HHHHHH
Confidence 444433
No 243
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=27.84 E-value=2.7e+02 Score=27.08 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHH-HHHHHHHHhhcCCcchHHHHHHHhhc
Q 003608 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALL-AIGALCDKLKQTEPYKSELERMLVQH 464 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~-~lg~~a~~l~~~~~~~~~l~~~l~~~ 464 (808)
.|..|.+++........... ++.+...+.. ..||-..|+... ++|.+ +.. .+ .+.+.+
T Consensus 62 ~r~~al~~l~~~~~~~~~~~----~~~~~~~l~~-------~~~Wd~vD~~~~~i~g~~---~~~-~~---~~~~~l--- 120 (208)
T cd07064 62 YQYVAIDLLRKYKKFLTPED----LPLLEELITT-------KSWWDTVDSLAKVVGGIL---LAD-YP---EFEPVM--- 120 (208)
T ss_pred HHHHHHHHHHHHHhcCCHHH----HHHHHHHHcC-------CchHHHHHHHHHHHhHHH---HhC-Ch---hHHHHH---
Confidence 46667666666544333332 3333444433 148998886443 33332 111 11 111222
Q ss_pred ccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 465 VFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 465 v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
.....+++.++|+.|+.+.-.|.+ ......++..+...+.|++--|+-+-..+|..+.... ++.+.+|+..
T Consensus 121 -~~W~~s~~~W~rR~ai~~~l~~~~-----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d--~~~V~~fl~~ 191 (208)
T cd07064 121 -DEWSTDENFWLRRTAILHQLKYKE-----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTN--PDWVRDFVAA 191 (208)
T ss_pred -HHHHcCCcHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccC--HHHHHHHHHH
Confidence 122347788999988865433322 1224556666777788887788988899999887653 5666666543
No 244
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.62 E-value=2.4e+02 Score=34.09 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhcc--c-chH-HHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Q 003608 386 PRTASMDFVSELVRKRG--K-ENL-QKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERML 461 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~--~-~~~-~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l 461 (808)
-|.-|+=+|..++..|+ + .++ ..++..|.+.++.. ..|..|-=++.++|.+-+...+..-. .....-
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~-------~~pLLrQW~~icLG~LW~d~~~Arw~--G~r~~A 643 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD-------PEPLLRQWLCICLGRLWEDYDEARWS--GRRDNA 643 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHhhhcchhhhc--cccccH
Confidence 57778878888888773 2 233 34666666666531 25888888999999887765432100 000001
Q ss_pred hhcccccccCCCcchhhHHHHHHHhhhccc---cCCh-hH-------------HHHHH----HHHHhcCCCCCCchHHhH
Q 003608 462 VQHVFPEFSSPVGHLRAKAAWVAGQYAHIN---FSDQ-NN-------------FRKAL----HSVVSGLRDPELPVRVDS 520 (808)
Q Consensus 462 ~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~---~~~~-~~-------------~~~~~----~~ll~~l~~~~~~V~~~A 520 (808)
...+...|.++-|-+|++|...+|.|-+.. |.+. .. .+..+ ..++..++|..+.||..-
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 122344577788999999999999985421 2221 11 11122 245555677778888888
Q ss_pred HHHHHHHHHh
Q 003608 521 VFALRSFVEA 530 (808)
Q Consensus 521 ~~al~~~~~~ 530 (808)
+.++..+.-.
T Consensus 724 ~v~ls~~~~g 733 (1387)
T KOG1517|consen 724 VVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 245
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=27.56 E-value=4.2e+02 Score=29.92 Aligned_cols=132 Identities=19% Similarity=0.101 Sum_probs=78.5
Q ss_pred HHHHHHHHhccc-chHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHH---HHHHHHhhcCCcchHHHHHHHhhcccc
Q 003608 392 DFVSELVRKRGK-ENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAI---GALCDKLKQTEPYKSELERMLVQHVFP 467 (808)
Q Consensus 392 ~ll~~l~~~~~~-~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l---g~~a~~l~~~~~~~~~l~~~l~~~v~~ 467 (808)
.++..+++.... ...+.+++.+...+... +.+-+.|-.++..+ ......+.. .....+.+++.....|
T Consensus 302 kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~------~~~~klk~~~l~F~~~~~~~~~~~~~--~~l~~l~~~i~~~g~p 373 (501)
T PF13001_consen 302 KILSLLSKSVIAATSFPNILQIVFDGLYSD------NTNSKLKSLALQFIRGSSWIFKHISP--QILKLLRPVILSQGWP 373 (501)
T ss_pred HHHHHHHHhHHHHhCCccHHHHHhccccCC------ccccccchhcchhhhcchHHhhhcCH--HHHHHHHHHHHhcCcc
Confidence 445555554322 23455666665555431 12557777777777 544444332 1234566666666777
Q ss_pred ccc--------CCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 468 EFS--------SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 468 ~l~--------~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
.++ ....-+|+.+.-++|..+.-....-..=-.++..++..|.++..-+|.+.-.||..+....
T Consensus 374 ~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 374 LIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred ccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 763 1245799999999999976321111111456666666676666668888888888887664
No 246
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=27.34 E-value=2e+02 Score=24.84 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=41.0
Q ss_pred CCchHHhHHHHHHHHHHhcc-cccccccchHHHHHHHHHHhhhhchhh----HHHHHHHHHHhccccccchH
Q 003608 513 ELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNEVENED----LVFTLETIVDKFGEEMAPYA 579 (808)
Q Consensus 513 ~~~V~~~A~~al~~~~~~~~-~~~~l~p~l~~ll~~l~~ll~~~~~~~----l~~~l~~iv~~~~~~i~p~~ 579 (808)
+.--...|..+...+++... ....+..+..+++..|+.+=++.+.+. -..+|-+++....+.+.||.
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~~~~L 89 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKVAPYL 89 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGHHH-H
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456688889999998752 123899999999999999988775543 45667666666666666653
No 247
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=27.28 E-value=1.8e+02 Score=33.82 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=62.3
Q ss_pred cCCCcchhhHHHHHHHhhhcc--ccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccc-ccccc-cchHHHH
Q 003608 470 SSPVGHLRAKAAWVAGQYAHI--NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD-LNEIR-PILPQLL 545 (808)
Q Consensus 470 ~~~~~~lr~~a~~~l~~~~~~--~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~-~~~l~-p~l~~ll 545 (808)
.++.+.+++.|.-.+...+.- ..+..-.--.-++.++..+..++.-|+..||.||++++..... .+.+. ++.+.+
T Consensus 243 ~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv- 321 (717)
T KOG1048|consen 243 MSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGV- 321 (717)
T ss_pred hccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCCh-
Confidence 356677888777766554321 1111112233456677778778888999999999999976532 12222 233332
Q ss_pred HHHHHHhhhhchhhHHHHHHHHHHhcccc
Q 003608 546 DEFFKLMNEVENEDLVFTLETIVDKFGEE 574 (808)
Q Consensus 546 ~~l~~ll~~~~~~~l~~~l~~iv~~~~~~ 574 (808)
..++.++.+....++...+..+..+++..
T Consensus 322 ~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 322 PTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 23455666666667777777777766543
No 248
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=26.91 E-value=77 Score=29.71 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHH
Q 003608 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l 548 (808)
...+...+.+|.... ...+++.+-....| ..||.+|+..|+.+ +.+.+.-|++++++.|
T Consensus 56 v~e~~~lL~~W~~i~------~~~aLeLL~~~f~d--~~VR~yAV~~L~~~-----sd~eL~~yL~QLVQaL 114 (171)
T cd00872 56 VAQMYQLLKRWPKLK------PEQALELLDCNFPD--EHVREFAVRCLEKL-----SDDELLQYLLQLVQVL 114 (171)
T ss_pred HHHHHHHHHCCCCCC------HHHHHHHCCCcCCC--HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 249
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=26.75 E-value=1.4e+02 Score=26.01 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhh
Q 003608 384 YSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463 (808)
Q Consensus 384 ~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~ 463 (808)
|||-..+..+=..=+..+.+.-. .++..+.+++... .+....-.|++=+|-+....+........+. .+.
T Consensus 20 WSP~H~se~FW~ENa~kf~~~~~-~llk~L~~lL~~s-------~d~~~laVac~Dig~~vr~~p~gr~ii~~lg--~K~ 89 (119)
T PF11698_consen 20 WSPVHKSEKFWRENADKFEENNF-ELLKKLIKLLDKS-------DDPTTLAVACHDIGEFVRHYPNGRNIIEKLG--AKE 89 (119)
T ss_dssp --GGGG-HHHHHHHSGGGSSGGG-HHHHHHHHHH-SH-------HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHS--HHH
T ss_pred ccCCCCCccHHHHHHHHHHHccc-HHHHHHHHHHccC-------CCcceeehhhcchHHHHHHChhHHHHHHhcC--hHH
Confidence 56655555555555555533222 2233333444321 2334444455555554444332111111110 122
Q ss_pred cccccccCCCcchhhHHHHHHHhh
Q 003608 464 HVFPEFSSPVGHLRAKAAWVAGQY 487 (808)
Q Consensus 464 ~v~~~l~~~~~~lr~~a~~~l~~~ 487 (808)
.|+..++++++-||..|+.++.++
T Consensus 90 ~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 90 RVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHH
Confidence 234445566666777777666654
No 250
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=26.65 E-value=1.8e+02 Score=30.72 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=45.8
Q ss_pred ccccCCCcchhhHHHHHHHhhhccccCChh------HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc
Q 003608 467 PEFSSPVGHLRAKAAWVAGQYAHINFSDQN------NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 467 ~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~------~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (808)
..+.+++-+.|+.++.++|.+-.-. .+.+ --...+..++..|+|++..+|..|...++-|+.+.+
T Consensus 216 ~Ll~s~NYvtkrqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 216 KLLESSNYVTKRQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHCT-SSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHccCCCeEeehhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 3567788899999999999874211 0100 125567888889999999999999999999998864
No 251
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=26.55 E-value=9e+02 Score=26.71 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcC-----CCCChhhhhh
Q 003608 605 DPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFS-----PTISLEMWSL 679 (808)
Q Consensus 605 ~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~-----~~~~p~l~~~ 679 (808)
.++.....-+.+|+..+..+ .++...-+...-+|.+..+-.-++..+ +.++.+.-.++..+ +.-.|.+..+
T Consensus 122 e~~~~m~~d~Y~cL~~Va~~---e~G~~~Lia~G~~~~~~Q~y~~~~~~~-d~alal~Vlll~~~~~~cw~e~~~~flal 197 (698)
T KOG2611|consen 122 EDNLIMLEDCYECLYLVATA---EAGLMTLIASGGLRVIAQMYELPDGSH-DMALALKVLLLLVSKLDCWSETIERFLAL 197 (698)
T ss_pred hhhHHHHHHHHHHHHHHhcC---CchhHHHHhcCchHHHHHHHhCCCCch-hHHHHHHHHHHHHHhcccCcCCHHHHHHH
Confidence 34444455666776655433 222223344555666665543222222 23333333333221 2333444444
Q ss_pred HHHHHHHhhhhHHhhhhhhhhhhhhhhccCccccccc--CCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHc
Q 003608 680 WPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC--KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 757 (808)
Q Consensus 680 ~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~ 757 (808)
...+..-++......-=+.+.+|-+.+...+.+++-. .+..+...++.-+.++|+++ ...+.+..|..++..+...+
T Consensus 198 i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~IL~~k-v~p~qr~pAL~Laa~~~hil 276 (698)
T KOG2611|consen 198 IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVAILQNK-VAPSQRLPALILAANMMHIL 276 (698)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHHHHhcc-cCchhcChHHHHHHHHHHHh
Confidence 4444433322111122234555555444444333310 12256777787888888754 45555788999999999999
Q ss_pred CcC
Q 003608 758 KGQ 760 (808)
Q Consensus 758 ~~~ 760 (808)
|.+
T Consensus 277 G~~ 279 (698)
T KOG2611|consen 277 GEK 279 (698)
T ss_pred chh
Confidence 865
No 252
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=26.52 E-value=6.3e+02 Score=27.46 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhh
Q 003608 499 RKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE 554 (808)
Q Consensus 499 ~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~ 554 (808)
+++++.+.+++.+.+.-....++-|+.+|.+... .-+.=.=.++++.|+.++.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~--~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD--ICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHHHHHH
Confidence 3478889999988887889999999999998642 22211224577777777654
No 253
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.50 E-value=1.7e+03 Score=29.81 Aligned_cols=147 Identities=12% Similarity=0.068 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhhchhh---HHHHHHHHHHhccccccchHH-HHHH-HHHHHHHHHH---hcccCC---------CCCC
Q 003608 542 PQLLDEFFKLMNEVENED---LVFTLETIVDKFGEEMAPYAL-GLCQ-NLAAAFWRCM---NTAEAD---------EDAD 604 (808)
Q Consensus 542 ~~ll~~l~~ll~~~~~~~---l~~~l~~iv~~~~~~i~p~~~-~l~~-~L~~~~~~~~---~~~~~d---------~~~~ 604 (808)
-+++..|..+......+- .+.+|-.++..+|..+.|-.- .++. .|...|-.+- .....+ ..+.
T Consensus 1346 ~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~ 1425 (1780)
T PLN03076 1346 FPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGE 1425 (1780)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence 345555555544322332 445555566778888888333 3333 3333332221 110100 0000
Q ss_pred ChhH-HHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhh-cCCCCChhhhh-hHH
Q 003608 605 DPGA-LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTF-FSPTISLEMWS-LWP 681 (808)
Q Consensus 605 ~~~~-~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~-~~~~~~p~l~~-~~~ 681 (808)
.+.. .....+..++..++.-...--+.+..+-+.++-++..|+.++...+..-+...+..++. +...+++..|. +..
T Consensus 1426 ~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076 1426 LDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 0111 11223333344443333222233333456666677777778888888888888888865 66899999994 455
Q ss_pred HHHHHhh
Q 003608 682 LMMEALA 688 (808)
Q Consensus 682 ~l~~~~~ 688 (808)
.+.+++.
T Consensus 1506 ~~~~lf~ 1512 (1780)
T PLN03076 1506 SLKEAAN 1512 (1780)
T ss_pred HHHHHHH
Confidence 5555553
No 254
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=26.35 E-value=6.4e+02 Score=27.07 Aligned_cols=55 Identities=22% Similarity=0.153 Sum_probs=37.7
Q ss_pred hHHHHHHHhhhcc-----ccCChhHHHHHHHHHHhcCC--CCCCchHHhHHHHHHHHHHhcc
Q 003608 478 AKAAWVAGQYAHI-----NFSDQNNFRKALHSVVSGLR--DPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 478 ~~a~~~l~~~~~~-----~~~~~~~~~~~~~~ll~~l~--~~~~~V~~~A~~al~~~~~~~~ 532 (808)
+.++|++-+.-+- .-........+.+.+++|+- ++.+++|..|...+..+++.+.
T Consensus 229 ~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 5567777666432 10111457777788887753 5567899999999999999874
No 255
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.33 E-value=86 Score=37.58 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=62.8
Q ss_pred chhhHHHHHHHHHHHHHHhhc--CCcchHHHHHHHhhcccccccC-CCcchhhHHHHHHHhh-hccccCCh---hHHHHH
Q 003608 429 PYRQKDGALLAIGALCDKLKQ--TEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQY-AHINFSDQ---NNFRKA 501 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~--~~~~~~~l~~~l~~~v~~~l~~-~~~~lr~~a~~~l~~~-~~~~~~~~---~~~~~~ 501 (808)
+...|--+-++++.+.....- +.=...++.. .-+..+++ ++|++|-=+|.|+|+. .++. .. -.....
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~----iCle~lnd~~~pLLrQW~~icLG~LW~d~~--~Arw~G~r~~A 643 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIG----ICLEHLNDDPEPLLRQWLCICLGRLWEDYD--EARWSGRRDNA 643 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHH----HHHHHhcCCccHHHHHHHHHHHHHHhhhcc--hhhhccccccH
Confidence 346677777788888776432 1111122222 22334555 4799999999999995 3321 11 123445
Q ss_pred HHHHHhcCCCCCCchHHhHHHHHHHHHHhc
Q 003608 502 LHSVVSGLRDPELPVRVDSVFALRSFVEAC 531 (808)
Q Consensus 502 ~~~ll~~l~~~~~~V~~~A~~al~~~~~~~ 531 (808)
.+.+...|.|+.+-||.+|..||.+|+...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 566677788888889999999999999863
No 256
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.30 E-value=2.5e+02 Score=25.00 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc
Q 003608 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 496 ~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (808)
.....++.++-..|+++++.|+..|...|..++.+|.
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg 69 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG 69 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence 3457788888888988999999999999999999984
No 257
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.06 E-value=1.2e+02 Score=27.39 Aligned_cols=68 Identities=10% Similarity=0.194 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccch--HHHHHHHHHHHhh-----chhhHHHHHHHHHHH
Q 003608 724 SLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV--EPYLRITVERLRR-----AEKSYLKCLLVQVVS 793 (808)
Q Consensus 724 ~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l--~~il~~~~~~l~~-----~~~~~~~~~~~~~i~ 793 (808)
.....+.+-+++++ ...+..|..++++++.+||..+-..+ ..|++.++..+.. ..+..++..+++++-
T Consensus 38 ~a~rai~krl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 38 LAVRLLAHKIQSPQ--EKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 34456666676543 22357889999999999998653322 2366666666642 246677777776653
No 258
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.99 E-value=4.1e+02 Score=23.57 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhccccccccc-chH-HHHHHHHHHhhh
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRP-ILP-QLLDEFFKLMNE 554 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p-~l~-~ll~~l~~ll~~ 554 (808)
....++.++-..|+.+++.|+..|...|..+..+|. ..|.. +.. ..+..+.+++..
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg--~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCG--KPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--hHHHHHHhhHHHHHHHHHHhCC
Confidence 457788888888888899999999999999999984 32221 222 444445555543
No 259
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.58 E-value=3.7e+02 Score=24.27 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (808)
....++.++-..|++.++.|+..|...|..+..+|.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG 73 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG 73 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC
Confidence 356778888888888888999999999999999984
No 260
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.27 E-value=4.2e+02 Score=23.88 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcc
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR 532 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~ 532 (808)
.....+.++...|++.++.|++.|...|..+..+|.
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG 70 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG 70 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 456788888888988898999999999999999984
No 261
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.14 E-value=1e+03 Score=26.50 Aligned_cols=378 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhccc
Q 003608 387 RTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVF 466 (808)
Q Consensus 387 r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~ 466 (808)
|..|.+=+......++-..++.++..+..++.. +..-..|.+++..+-.+..+-..... .....+-+.+.
T Consensus 7 R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~-------~~p~e~R~~~~~ll~~~i~~~~~~~~---~~R~~fF~~I~ 76 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPLSSIEEIWYAAKDLIDP-------NQPSEARRAALELLIACIKRQDSSSG---LMRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCC-------CCCHHHHHHHHHHHHHHHHccccccH---HHHHHHHHHHh
Q ss_pred ccccCCCcchhhHHHHHHHhhhc-cccCChhHHHHHHHHHHhcC-------------------CCCCCchHHhHHHHHHH
Q 003608 467 PEFSSPVGHLRAKAAWVAGQYAH-INFSDQNNFRKALHSVVSGL-------------------RDPELPVRVDSVFALRS 526 (808)
Q Consensus 467 ~~l~~~~~~lr~~a~~~l~~~~~-~~~~~~~~~~~~~~~ll~~l-------------------~~~~~~V~~~A~~al~~ 526 (808)
..-.+++--+|-.|+..++.=+. ..+-..+...-+..-+-... ..............+-.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Q ss_pred HHHhcc-------cccccccchHHHHHHHHHHhhhhchhhHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhcccC
Q 003608 527 FVEACR-------DLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEA 599 (808)
Q Consensus 527 ~~~~~~-------~~~~l~p~l~~ll~~l~~ll~~~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~ 599 (808)
|+.++- ..+.+...+..++..+...-.+.+.+....++++++. |+.==......++..|+. +.....-
T Consensus 157 ~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCs----i~~~~~l 231 (464)
T PF11864_consen 157 FLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCS----IVNSVSL 231 (464)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhh----Hhccccc
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHH--HHHcccChhhHHHHHHHHHHHhhhcC-----CCC
Q 003608 600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIM--RRMLTTDGQEVFEEVLEIVSYMTFFS-----PTI 672 (808)
Q Consensus 600 d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i--~~~l~~~~~~~~e~~l~ll~~~~~~~-----~~~ 672 (808)
.. ...+++.+|+++ ..-......+..++ ..--+.+....+.-|+.+++-++-.. +.+
T Consensus 232 ~~-----------~~w~~m~nL~~S-----~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l 295 (464)
T PF11864_consen 232 CK-----------PSWRTMRNLLKS-----HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSL 295 (464)
T ss_pred ch-----------hHHHHHHHHHcC-----ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCccee
Q ss_pred ChhhhhhHHHHHHHhhhhHHhhhhhhhhhhhhhh-ccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHH
Q 003608 673 SLEMWSLWPLMMEALADWAIDFFPNILVPLDNYI-SRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIE 751 (808)
Q Consensus 673 ~p~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i-~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~ 751 (808)
+-....++|.+.+.++..+.-.--+++..+.+++ ......+.. ..-..+++++.+++......+.........
T Consensus 296 ~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~----~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~-- 369 (464)
T PF11864_consen 296 PFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSE----EDWDIILDIIEEIFDKIQPFDSWYSNSSSL-- 369 (464)
T ss_pred cccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcc----cCchHHHHHHHHHHhhccccccccccccch--
Q ss_pred HHHHHcCcCcccchHHHHHHHHHHHhhchhhHHHHHHHHHHHHhHhhChHHHHHhhC
Q 003608 752 VVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIVIL 808 (808)
Q Consensus 752 ~ii~~~~~~~~~~l~~il~~~~~~l~~~~~~~~~~~~~~~i~~~~~~n~~~~~~~~~ 808 (808)
..+...+..++..+=+...+..-.--+..+++.+..+.-|-|..+...++
T Consensus 370 -------~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl 419 (464)
T PF11864_consen 370 -------DQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHSYLPDSSALLVL 419 (464)
T ss_pred -------HHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhccCCHHHHHHHH
No 262
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.69 E-value=2.7e+02 Score=32.09 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhc----c---cchHHHHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHH
Q 003608 386 PRTASMDFVSELVRKR----G---KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELE 458 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~----~---~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~ 458 (808)
.|.+|.--+..++... + ..+...+.+++.+.+.+..+. .+-..+-..+.+||.++..- ..
T Consensus 413 l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~LkaLGN~g~~~---------~i 479 (574)
T smart00638 413 LRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK----GDEEEIQLYLKALGNAGHPS---------SI 479 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc----CCchheeeHHHhhhccCChh---------HH
Confidence 4555554455554422 1 112345566666655443211 24456788899999765321 11
Q ss_pred HHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHH
Q 003608 459 RMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRS 526 (808)
Q Consensus 459 ~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~ 526 (808)
..+..++. .-....+.+|..|+|.+.+.+... +......+++...+. +.+.-||.+|+.+|-.
T Consensus 480 ~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~--p~~v~~~l~~i~~n~--~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 480 KVLEPYLE-GAEPLSTFIRLAAILALRNLAKRD--PRKVQEVLLPIYLNR--AEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHcCC--CCChHHHHHHHHHHHh
Confidence 22333332 112345689999999999876532 222233333333222 2344489988877654
No 263
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=23.03 E-value=8.7e+02 Score=25.30 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=21.2
Q ss_pred ChHHHHHHHHHHHHHHhhhCCCCChhHHHHHHHH
Q 003608 101 PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHN 134 (808)
Q Consensus 101 ~~~i~~~~~~~i~~Ia~~d~p~~Wp~ll~~l~~~ 134 (808)
+++-|+-.+.+-..+...|...+|.+++..+..+
T Consensus 2 d~k~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL 35 (307)
T PF04118_consen 2 DSKYKKYNAEVEKALKSFESSSEWADYISFLGKL 35 (307)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444555566666667777778888765554443
No 264
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=22.99 E-value=9.8e+02 Score=25.88 Aligned_cols=120 Identities=14% Similarity=0.204 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccC-CCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCC
Q 003608 432 QKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSS-PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR 510 (808)
Q Consensus 432 ~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~-~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~ 510 (808)
-..-.|-++|++-.+. .-|++..-.-|+.+.++|.-.. .-..-...-.+|+-||.+ +++.....++.+++..--
T Consensus 235 GIaELLEIlgSiIngf--AlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfve---Kd~kl~~~VIrglLK~WP 309 (457)
T KOG2085|consen 235 GIAELLEILGSIINGF--ALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVE---KDPKLTETVIRGLLKYWP 309 (457)
T ss_pred CHHHHHHHHHHhcCcc--cCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeec---cCccccHHHHHHHHHhcC
Confidence 3444566777766653 2244445557788888887442 112223333456666655 244567888888888753
Q ss_pred CCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhhhhch
Q 003608 511 DPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVEN 557 (808)
Q Consensus 511 ~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~~~~~ 557 (808)
-.+..-.+.=..-|..+++.. .+..++....++...+..+++....
T Consensus 310 ~tnS~KEVmFL~ElEEILe~i-ep~eFqk~~~PLf~qia~c~sS~HF 355 (457)
T KOG2085|consen 310 KTNSSKEVMFLNELEEILEVI-EPSEFQKIMVPLFRQIARCVSSPHF 355 (457)
T ss_pred CCCCcceeeeHhhHHHHHHhc-CHHHHHHHhHHHHHHHHHHcCChhH
Confidence 322223334445566666665 3777888888888888888776543
No 265
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=22.83 E-value=1e+02 Score=28.69 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHH
Q 003608 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l 548 (808)
...+...+.+|.... ...+++.+-....+ ..||.+|+..|..+ ..+.+.-|++++++.|
T Consensus 63 ~~e~~~lL~~W~~i~------~~~aLeLL~~~f~~--~~VR~yAV~~L~~~-----sd~eL~~yL~QLVQaL 121 (166)
T cd00870 63 VKQALELMPKWAKID------IEDALELLSPYFTN--PVVRKYAVSRLKLA-----SDEELLLYLLQLVQAL 121 (166)
T ss_pred HHHHHHHHhcCCCCC------HHHHHHHcCccCCC--HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 266
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.28 E-value=8.6e+02 Score=24.97 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHcccChhhHHHHHHHHH--------HHhhhcCCCCChhhhhhHHHHHHHhhhh---HHhhhhhhhhhhhhh--hc
Q 003608 641 PIMRRMLTTDGQEVFEEVLEIV--------SYMTFFSPTISLEMWSLWPLMMEALADW---AIDFFPNILVPLDNY--IS 707 (808)
Q Consensus 641 p~i~~~l~~~~~~~~e~~l~ll--------~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~~~~~~~~~~~L~~~--i~ 707 (808)
|...+++..+-.-+++...+-+ ....-.+-.-.+.+.++.|.....+.+. ....++....++..| +.
T Consensus 185 plvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL 264 (450)
T COG5095 185 PLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q ss_pred cCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccC--------chhHHHHHHHHHcCcCcccchHHHHHHHHHHHhh
Q 003608 708 RGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIE--------PAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (808)
Q Consensus 708 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~--------~a~~ll~~ii~~~~~~~~~~l~~il~~~~~~l~~ 778 (808)
..+..|+. +|++.++--+-.++-.++...++.. .|+.++..++.+++......-|.+...+++..-+
T Consensus 265 ~N~~iFvd----PY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD 339 (450)
T COG5095 265 KNKYIFVD----PYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLD 339 (450)
T ss_pred cCCceeec----HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHh
No 267
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.99 E-value=5.2e+02 Score=22.32 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhc-ccCCCCCCCcchhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHH
Q 003608 403 KENLQKFIQFIVGIFK-RYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAA 481 (808)
Q Consensus 403 ~~~~~~il~~i~~~l~-~~~~~~~~~~~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~ 481 (808)
++.++.+++++...+. + .....+-|+|++++.++... +..+.+-.-+...+......... .+.++
T Consensus 1 E~~l~~lLP~l~~~L~~s--------~~~d~~~a~ymIl~~La~k~----~L~~~~l~~l~~~i~~~~~~~~~--~~~~l 66 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSS--------SSPDLQAAAYMILSVLASKV----PLSDEVLNALMESILKNWTQETV--QRQAL 66 (121)
T ss_pred CcHHHHHHHHHHHHHccC--------CcHHHHHHHHHHHHHHHhhc----CCcHHHHHHHHHHHHhccccchh--HHHHH
Q ss_pred HHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHH
Q 003608 482 WVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLL 545 (808)
Q Consensus 482 ~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll 545 (808)
-++.......-.....-...+..+...=+ ....+..+.+..+...-+.+++..++
T Consensus 67 ~~L~~l~q~q~~~~~lp~~~~~~l~~~~~---------l~~~L~~l~~~~~i~~fl~~l~~~lv 121 (121)
T PF12397_consen 67 ICLIVLCQSQENVDSLPRKVFKALLKLPD---------LIELLSELSEKYDIDKFLRALLRSLV 121 (121)
T ss_pred HHHHHHHHcccccccCCHHHHHHHHcCcc---------HHHHHHHHHhcCCHHHHHHHHHHHhC
No 268
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=21.50 E-value=3e+02 Score=28.94 Aligned_cols=80 Identities=23% Similarity=0.210 Sum_probs=50.7
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCcchHHHHHHHhhcccccccCCCcchhhHHHHHHHhhhccccCChhHHHHHHHHHHhc
Q 003608 429 PYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSG 508 (808)
Q Consensus 429 ~~~~~ea~l~~lg~~a~~l~~~~~~~~~l~~~l~~~v~~~l~~~~~~lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~ 508 (808)
+|..|..+...+|.+... .-++. +.. .+.+..+.+|..|...+|.... +..++.++..
T Consensus 56 ~~~vr~~aa~~l~~~~~~--------~av~~-l~~----~l~d~~~~vr~~a~~aLg~~~~---------~~a~~~li~~ 113 (335)
T COG1413 56 DLLVRLSAAVALGELGSE--------EAVPL-LRE----LLSDEDPRVRDAAADALGELGD---------PEAVPPLVEL 113 (335)
T ss_pred CHHHHHHHHHHHhhhchH--------HHHHH-HHH----HhcCCCHHHHHHHHHHHHccCC---------hhHHHHHHHH
Confidence 677777777776654321 11222 222 3446677899999998877542 2234444444
Q ss_pred CC-CCCCchHHhHHHHHHHHHHh
Q 003608 509 LR-DPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 509 l~-~~~~~V~~~A~~al~~~~~~ 530 (808)
+. |++..||..|+.+|..+-+.
T Consensus 114 l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 114 LENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred HHcCCcHhHHHHHHHHHHhcCch
Confidence 44 68888999999999887544
No 269
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.44 E-value=3.1e+02 Score=24.90 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccc--hHHHHHHHHHHhhh
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI--LPQLLDEFFKLMNE 554 (808)
Q Consensus 497 ~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~--l~~ll~~l~~ll~~ 554 (808)
....++.++...|++.++.|++.|...|..+..+|. ..|... -..+++.|.++++.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG--~~fh~evask~Fl~eL~kl~~~ 91 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG--KRFHQEVASRDFTQELKKLIND 91 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC--HHHHHHHhhHHHHHHHHHHhcc
Confidence 357778888888888888999999999999999985 222211 13455555555554
No 270
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.42 E-value=7e+02 Score=26.80 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=84.2
Q ss_pred ccccccCCCcchhhHHHHHHHhhhcc-ccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHH
Q 003608 465 VFPEFSSPVGHLRAKAAWVAGQYAHI-NFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQ 543 (808)
Q Consensus 465 v~~~l~~~~~~lr~~a~~~l~~~~~~-~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ 543 (808)
+++-+...+.-+|-.|+.-+-++-.. ...-......+++.+.....|.+.-||..+..++..++... .++.+.|++..
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~-~~e~~sp~~~l 141 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPA-CKEDQSPMVSL 141 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhc-chhhhcchHHH
Confidence 33445556678888888888776432 11011356777788888888888889999999999987654 35558899999
Q ss_pred HHHHHHHHhhhhchh---hHHHHHHHHHHhccccccchHHHHHHHHH
Q 003608 544 LLDEFFKLMNEVENE---DLVFTLETIVDKFGEEMAPYALGLCQNLA 587 (808)
Q Consensus 544 ll~~l~~ll~~~~~~---~l~~~l~~iv~~~~~~i~p~~~~l~~~L~ 587 (808)
++..+...|.....+ +-...++-++..+.+.+.-++..+.....
T Consensus 142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~ 188 (393)
T KOG2149|consen 142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFK 188 (393)
T ss_pred HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 988888777765443 24566777788888777666665544443
No 271
>PF04336 DUF479: Protein of unknown function, DUF479; InterPro: IPR007431 This entry contains the Escherichia coli gene yajB, now renamed acpH, which encodes an ACP hydrolase. AcpH converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP []. A mutant E. coli strain having a total deletion of the acpH grows normally, showing that phosphodiesterase activity is not essential for growth, although it is required for turnover of the ACP prosthetic group in vivo. AcpH is found only in Gram-negative organisms suggesting that it plays a role in some aspect of lipid metabolism that is unique to these organisms. The most obvious of which is biosynthesis of lipid A. Because AcpH is a hydrolase, it could possibly be an editing enzyme that intercepts acyl-ACPs that would give an inappropriate lipid A structure if used as acyl donors []. ; GO: 0008770 [acyl-carrier-protein] phosphodiesterase activity, 0006633 fatty acid biosynthetic process
Probab=21.21 E-value=4.3e+02 Score=22.41 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=30.2
Q ss_pred HHhhccCCCCCCcCCCCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhhCC
Q 003608 65 FIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP 121 (808)
Q Consensus 65 ~i~~~W~~~~~~~~~~l~~e~k~~ir~~ll~~l~~~~~~i~~~~~~~i~~Ia~~d~p 121 (808)
.+.++|.. .+++.-....+.....|......+-..+...+..+...||-
T Consensus 4 fLA~~W~~--------~s~~~L~~f~~~~Y~~L~~~~~~lP~~~~~~~~~m~~~dWL 52 (106)
T PF04336_consen 4 FLAKHWSQ--------FSDQPLEDFAQRFYQQLEANQPILPPRFQRMLPYMIEHDWL 52 (106)
T ss_pred HHHHhHHH--------HCcCCHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhCHH
Confidence 46678886 55566666777777777554444445555555666666543
No 272
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=9.5e+02 Score=25.02 Aligned_cols=62 Identities=6% Similarity=-0.016 Sum_probs=45.6
Q ss_pred ccCCCcchhhHHHHHHHhhhccccCCh--hH----HHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHh
Q 003608 469 FSSPVGHLRAKAAWVAGQYAHINFSDQ--NN----FRKALHSVVSGLRDPELPVRVDSVFALRSFVEA 530 (808)
Q Consensus 469 l~~~~~~lr~~a~~~l~~~~~~~~~~~--~~----~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~ 530 (808)
|-.++..++.-+|..+|+..+-.-.+. +. -..+++.++.|+..++.-|.-+|..+++++..-
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 335677899999999999865321111 11 356888999999888888999999999988654
No 273
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=1.2e+03 Score=26.26 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHhhHHHHHHHHcccChhhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHhh
Q 003608 609 LAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALA 688 (808)
Q Consensus 609 ~~~~~~l~~i~~li~~~~~~~~~~~~~~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~l~~~~~~l~~~~~ 688 (808)
.++..+.+.+.++.-.+|+.. ++.++ +-.+.. .+..-+..|.++-++..++++ ++|.=-.++|.+++.+-
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~e-~lk~~----~~~l~e--~~~~We~~EAaLF~l~~~~~~---~~~~e~~i~pevl~~i~ 436 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSDE-CLKQM----YIRLKE--NNASWEEVEAALFILRAVAKN---VSPEENTIMPEVLKLIC 436 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcHH-HHHHH----HHHHcc--CCCchHHHHHHHHHHHHHhcc---CCccccchHHHHHHHHh
Confidence 345556666666666665432 22211 111111 123447788888888888754 33443444555555542
Q ss_pred hh--HHhhhhhhhhhhhhhhccCcccccccCCchHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccchH
Q 003608 689 DW--AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVE 766 (808)
Q Consensus 689 ~~--~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l~ 766 (808)
+- ........+..+..| ++.+- .+|+.++.+.+.+.+.++.... +..++.....+...|..+....++
T Consensus 437 nlp~Q~~~~~ts~ll~g~~----~ew~~--~~p~~le~v~~~~~~~~~~~~~----as~~a~~~~~i~~~c~~~~~~l~~ 506 (559)
T KOG2081|consen 437 NLPEQAPLRYTSILLLGEY----SEWVE--QHPELLEPVLRYIRQGLQLKRL----ASAAALAFHRICSACRVQMTCLIP 506 (559)
T ss_pred CCccchhHHHHHHHHHHHH----HHHHH--hCcHHHHHHHHHHHHHhhhcch----hHHHHHHHHHHHHHHHHHhhhhhH
Confidence 10 011222223333222 22222 4567788888877777764331 233445555555556666666777
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHhH
Q 003608 767 PYLRITVERLRRAEKSYLKCLLVQVVSFHE 796 (808)
Q Consensus 767 ~il~~~~~~l~~~~~~~~~~~~~~~i~~~~ 796 (808)
.+...+........+..-.+ +++.+...+
T Consensus 507 ~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~ 535 (559)
T KOG2081|consen 507 SLLELIRSLDSTQINEEAAC-LLQGISLII 535 (559)
T ss_pred HHHHHHHHHHHHhccHHHHH-HHHHHHHHH
Confidence 76666555544433333333 455444433
No 274
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=20.94 E-value=1.2e+02 Score=27.73 Aligned_cols=59 Identities=24% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHH
Q 003608 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l 548 (808)
...+...+..|.... ....++.+.....+ +.||.+|+..|..+ ..+.+.-|+|++++.|
T Consensus 56 ~~e~~~lL~~W~~~~------~~~aL~LL~~~~~~--~~vr~yAv~~L~~~-----~~~~l~~ylpQLVQaL 114 (152)
T cd00864 56 VSELYQLLKWWAPLS------PEDALELLSPKYPD--PVVRQYAVRVLESA-----SDDELLLYLPQLVQAL 114 (152)
T ss_pred HHHHHHHHhcCCCCC------HHHHHHHcCCcCCC--HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 275
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.77 E-value=4.1e+02 Score=23.85 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccch--HHHHHHHHHHhhh
Q 003608 496 NNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPIL--PQLLDEFFKLMNE 554 (808)
Q Consensus 496 ~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l--~~ll~~l~~ll~~ 554 (808)
.....++.++-..|.+.++.|+..|...+..+..+|. ..|...+ ..+++.+..++..
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg--~~f~~ev~~~~fl~~l~~l~~~ 96 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCG--PRFHREVASKEFLDELVKLIKS 96 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHhHHHHHHHHHHHHcc
Confidence 4567888888888888888899999999999999873 3332211 2455555555543
No 276
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=20.64 E-value=1.3e+02 Score=28.21 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHH
Q 003608 477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEF 548 (808)
Q Consensus 477 r~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l 548 (808)
...+..++.+|.... ....++.+.....| ..||.+|+.+|..+ ..+.+.-|++++++.|
T Consensus 56 ~~e~~~LL~~W~p~~------p~~ALeLL~~~f~d--~~VR~yAV~~L~~~-----~ddeL~~yLpQLVQaL 114 (169)
T cd00869 56 LMDVYQLLHQWAPLR------PLIALELLLPKFPD--QEVRAHAVQWLARL-----SNDELLDYLPQLVQAL 114 (169)
T ss_pred HHHHHHHHhCCCCCC------HHHHHHHcCCcCCC--hHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHH
No 277
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.39 E-value=7.1e+02 Score=24.93 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCCchhhhhc-hhhHHHHHHHHHhhcccCChhhHhhhhcCHHHHHHHhcccccccCCHHHHHHHHHH
Q 003608 317 RVTNLILQYLSNSISKNSMYNLL-QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVS 395 (808)
Q Consensus 317 ~~~~~~l~fl~~~~~~~~~~~~~-~~~l~~li~~li~~~l~l~~~d~e~w~~Dp~efv~~~~d~~~d~~s~r~~a~~ll~ 395 (808)
.-++.++-.+..++++++++..| +.+++- .+.|++.-+..+ -|. ...|-++..+|.
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPl----ylYpfL~Tt~~~------r~f-------------EyLRLtsLGVIg 150 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPL----YLYPFLNTTSKS------RPF-------------EYLRLTSLGVIG 150 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChh----hhHHhhhccccC------Cch-------------HHHhHHHHHHHH
Confidence 34677888999999999988654 445444 345665443322 232 236777888888
Q ss_pred HHHHhcccchHH-----HHHHHHHHHhcccCCCCCCCcchhhHHHHHHHHHH
Q 003608 396 ELVRKRGKENLQ-----KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGA 442 (808)
Q Consensus 396 ~l~~~~~~~~~~-----~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~lg~ 442 (808)
.+++.-.+++.. .+.+++...+... +-..|-.|.++++-
T Consensus 151 aLvk~dd~eVi~fLl~TeIVPlCLrime~G--------SelSKtvA~fIlqK 194 (293)
T KOG3036|consen 151 ALVKNDDQEVIRFLLTTEIVPLCLRIMESG--------SELSKTVATFILQK 194 (293)
T ss_pred HHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--------cHHHHHHHHHHHHH
Confidence 888776555432 3344555444432 23445555555554
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=20.38 E-value=1.9e+02 Score=25.81 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcCcCcccch-H-HHHHHHHHHHhhchhhH-HHHHHHHHHH
Q 003608 721 YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWV-E-PYLRITVERLRRAEKSY-LKCLLVQVVS 793 (808)
Q Consensus 721 ~~~~l~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~~~~~~l-~-~il~~~~~~l~~~~~~~-~~~~~~~~i~ 793 (808)
........+.+-|.+++ ...+..|..+++.++.+||..+...+ . .+++.+...+....+.. ++..+++++-
T Consensus 34 ~~k~a~r~l~krl~~~n--~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~ 107 (133)
T smart00288 34 GPKDAVRLLKKRLNNKN--PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQ 107 (133)
T ss_pred cHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 34444566666776443 22357889999999999987653322 2 35555554444443322 7777666654
No 279
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.24 E-value=1.8e+02 Score=27.19 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhccccCChhHHHHHHHHHHhcCCCCCCchHHhHHHHHHHHHHhcccccccccchHHHHHHHHHHhh
Q 003608 476 LRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMN 553 (808)
Q Consensus 476 lr~~a~~~l~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~V~~~A~~al~~~~~~~~~~~~l~p~l~~ll~~l~~ll~ 553 (808)
+|-.|.-|+-..-+..+..-+ ...++..+..+|.| +.-++.-++.-+.+++... +..+.+.++.+.+.+-..++
T Consensus 43 lRK~ayE~lytlLd~~~~~~~-~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~--p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 43 LRKAAYECLYTLLDTCLSRID-ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA--PEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHSTCSSS--HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS---HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHhh
Done!