Query 003608
Match_columns 808
No_of_seqs 189 out of 1708
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 18:21:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003608.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1656-1660//hhsearch_pdb/003608hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 1.0 1 1 715.1 65.3 757 1-807 1-802 (960)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 444.0 61.0 721 3-806 12-793 (852)
3 3m1i_C Exportin-1; heat repeat 1.0 1 1 420.7 51.3 589 1-627 13-680 (1049)
4 2x1g_F Cadmus; transport prote 1.0 1 1 406.1 49.8 732 1-778 4-840 (971)
5 2x19_B Importin-13; nuclear tr 1.0 1 1 405.6 60.4 719 1-778 21-828 (963)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 389.5 48.9 692 1-778 1-734 (861)
7 4hat_C Exportin-1; heat repeat 1.0 1 1 346.0 50.3 586 1-627 13-680 (1023)
8 1qgr_A Protein (importin beta 1.0 1 1 343.7 57.3 677 5-778 2-745 (876)
9 3gjx_A Exportin-1; transport, 1.0 1 1 329.2 48.6 586 1-627 25-706 (1073)
10 3ibv_A Exportin-T; karyopherin 1.0 1 1 317.1 57.6 654 1-712 3-773 (980)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=715.06 Aligned_cols=757 Identities=19% Similarity=0.284 Sum_probs=636.5
Q ss_pred CC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99-38899999972399977899999999972059872999999997237684567999999988774206999988689
Q 003608 1 MD-LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (808)
Q Consensus 1 Md-~~~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~ 79 (808)
|. ++++.++|++++|||+++| ||++|++++++|||+.+|++++.+.+.+.++|++|+++|||.|+++|+...+ ..
T Consensus 1 M~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~--~~ 76 (960)
T 1wa5_C 1 MSDLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG--NH 76 (960)
T ss_dssp CCHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS--CB
T ss_pred CCCHHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--CC
T ss_conf 9759999999997659987899--9999998555998899999998657988889999999999999854887656--78
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHCCC
Q ss_conf 99956799999999999712895889999999999996309999724799999871033---199999999999997146
Q 003608 80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF 156 (808)
Q Consensus 80 ~i~~~~k~~ir~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~ 156 (808)
.+++++|..||+.+++++.++++.||++++.+|+.|++.|||++||++++.+++.++++ .++++|.+|+++++++++
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89989999999999999980879999999999999998617130157999999984789889999999999999999887
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHHHHH---HCCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf --786785148999999869999999997---4045998----1499999999999677654048712279221789999
Q 003608 157 --KSDEERTPVYRIVEETFHHLLNIFNRL---VQIVNPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI 227 (808)
Q Consensus 157 --~~~~~~~~~~~~~~~~~p~l~~~~~~~---~~~~~~~----~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~ 227 (808)
++++.+.++..++..++|.+++++... ++.+.++ ....++++.++|+|++++.+++|..+. +.+..|++
T Consensus 157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~--~~~~~~~~ 234 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVGMG 234 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHH
T ss_conf 6148477899999999989999999999999987357987999999999999999999986256559999--98999999
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998158999899999946642025167899999999999999489999984339999999997389999999999994
Q 003608 228 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 307 (808)
Q Consensus 228 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~ 307 (808)
.+.+++....|.. ..|+++++...||++|||+++++.+++.+|++ .| .++.+.+++.+|+.+..
T Consensus 235 ~~~~~l~~~~p~~--~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~-------------~f-~~~~~~~~~~~~~~l~~ 298 (960)
T 1wa5_C 235 IFHKYLSYSNPLL--EDPDETEHASVLIKVKSSIQELVQLYTTRYED-------------VF-GPMINEFIQITWNLLTS 298 (960)
T ss_dssp HHHHHHSCCSCCC--C------CCCHHHHHHHHHHHHHHHHHHHCHH-------------HH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------------HH-HHHHHHHHHHHHHHHHH
T ss_conf 9999976899855--57855331327999999999999999999899-------------99-99999999999999984
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCH--HHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCC
Q ss_conf 518963588999999999983227701156403--339999999773056679325754311988999782363233479
Q 003608 308 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYS 385 (808)
Q Consensus 308 ~~~~~~~~~~~~~~~l~fl~~~~~~~~~~~~~~--~~l~~li~~li~~~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s 385 (808)
.. ..+..++++.++++||.++++.+..++.++ +++..++..+++|+|+++++|++.|++||+||++++.|+ +|.++
T Consensus 299 ~~-~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~-~d~~s 376 (960)
T 1wa5_C 299 IS-NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDT 376 (960)
T ss_dssp CC-SCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----C
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCC-CCCCC
T ss_conf 37-77672899999999999996867689987685189999999968734888878998844999999863575-51237
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CC-----HHHHHH
Q ss_conf 788999999999973060119999999999731257998788633558799999999778743079-54-----688999
Q 003608 386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTE-PY-----KSELER 459 (808)
Q Consensus 386 ~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~~~-~~-----~~~~~~ 459 (808)
+|.+|.+++..++..+++.+++++++++.+.++++.+++. .+|+.|||+++++|+++++..... .. ..++++
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~--~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 1889999999999970132789999999999987366961--21799999999999999874125677412344356999
Q ss_pred HHHHCCCCCCCCC---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC----
Q ss_conf 9845045556688---865004799999741116447954799999999822899998428869999999997033----
Q 003608 460 MLVQHVFPEFSSP---VGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR---- 532 (808)
Q Consensus 460 ~l~~~i~~~l~~~---~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~---- 532 (808)
++.++++|.++++ +|++|+|+||++|+|+++. +++++..+++.++++|.|++++||.+||.|+.+|++...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99997378744998888330398999999988658--9999999999999984899721999999999999844364446
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -----43110021399999999985111--------01138999999999604563000998999999999999821368
Q 003608 533 -----DLNEIRPILPQLLDEFFKLMNEV--------ENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEA 599 (808)
Q Consensus 533 -----~~~~~~p~l~~ll~~l~~ll~~~--------~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~ 599 (808)
.++.+.||++++++.|+.++++. +.+.++.+++.++..+++++.||+..+++.|...+.+.++
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~---- 608 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK---- 608 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 6544359875646999999999999714678776432279999999999988886124799999999999999973----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999835789999999999999952387478997776489999997012714589999999999550499999655664
Q 003608 600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSL 679 (808)
Q Consensus 600 ~~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~~~~e~~l~ll~~~~~~~~~~~p~~~~l 679 (808)
++ +......+++++++.++++ ..++.+..+++.++|++..+++++..+|.++++++++.+++..+.++|.+|++
T Consensus 609 ~~----~~~~~~~~~~e~l~~l~~~--~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 682 (960)
T 1wa5_C 609 NP----SNPRFTHYTFESIGAILNY--TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPL 682 (960)
T ss_dssp SC----CCHHHHHHHHHHHHHHHHT--SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGG
T ss_pred CC----CCCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 98----9727889999999999963--89536999999999999999986057669999999999997354788999999
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999--9964469755612443211143127212236689407999999999976178999875573548999999983
Q 003608 680 WPLMM--EALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNC 757 (808)
Q Consensus 680 ~~~l~--~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~ 757 (808)
||.+. ..+... ++++.+.++|.+|+..+++.+. . ++.+++++.+++.++. .+ ..|+.+++.++.++
T Consensus 683 ~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~-----~-~~~~l~~~~~~~~~~~-~~---~~a~~ll~~i~~~~ 750 (960)
T 1wa5_C 683 AQPLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFP-----D-LVPVLGIFQRLIASKA-YE---VHGFDLLEHIMLLI 750 (960)
T ss_dssp HHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCS-----C-SHHHHHHHHHHHTCTT-TH---HHHHHHHHHHHHHS
T ss_pred HHHHCCHHHHCCC--CCCHHHHHHHHHHHHHCHHHHH-----H-HHHHHHHHHHHHCCCC-CC---CHHHHHHHHHHHHC
T ss_conf 9998099985577--8735589999999976849999-----9-9999999999967994-20---35999999999979
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 758-622217799999999850011289-99999999870721807789851
Q 003608 758 KGQ-VDHWVEPYLRITVERLRRAEKSYL-KCLLVQVVSFHERANSDLSIIVI 807 (808)
Q Consensus 758 ~~~-~~~~l~~il~~~l~~l~~~~~~~~-~~~~~~vi~~~~~~~~~~~~~~~ 807 (808)
|++ +.||++.++..++++++..++..+ +..+..+...++.|+|..+++++
T Consensus 751 ~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 802 (960)
T 1wa5_C 751 DMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFI 802 (960)
T ss_dssp CHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 8777898899999999999831774749999999999999870879999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=444.04 Aligned_cols=721 Identities=16% Similarity=0.183 Sum_probs=534.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 388999999723999778999999999720598729999999972-3768456799999998877420699998868999
Q 003608 3 LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVD-NNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81 (808)
Q Consensus 3 ~~~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~-~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~~i 81 (808)
.+++.++|++++|||+++|++||++|++++++|+|+.+|..++.+ .+.+..+|++|+++|||.|+++|.. +
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~--------~ 83 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN--------F 83 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG--------C
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC--------C
T ss_conf 99999999987394989999999999998709988999999985668898679999999999989874477--------9
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHCCCCC
Q ss_conf 956799999999999712895889999999999996309999724799999871033---19999999999999714678
Q 003608 82 SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEFKS 158 (808)
Q Consensus 82 ~~~~k~~ir~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~---~~~~~L~~L~~i~~~~~~~~ 158 (808)
++++|..||+.+++++.++++.+|++++.+++.|++.|+|+.||++++.+.+.++++ ..++++.+|..++++.....
T Consensus 84 ~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 84 PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp CHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999874998999999999999999864813568999999998709998999999999999999857875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 67851489999998699999999974045998149999999999967765404871227922178999999998158999
Q 003608 159 DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVP 238 (808)
Q Consensus 159 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (808)
... .+......++|.+.+. +++. ...++..+++++..+... .+..+. +.+..+++.+...++.
T Consensus 164 ~~~--~~~~~~~~il~~l~~~----l~~~-----~~~vR~~A~~aL~~~~~~-~~~~~~--~~~~~~l~~l~~~~~d--- 226 (852)
T 4fdd_A 164 DSD--VLDRPLNIMIPKFLQF----FKHS-----SPKIRSHAVACVNQFIIS-RTQALM--LHIDSFIENLFALAGD--- 226 (852)
T ss_dssp HHC--SSSSCHHHHHHHHTTT----TTCS-----SHHHHHHHHHHHHTTTTT-TCHHHH--TSHHHHHHHHHHHHTC---
T ss_pred CHH--HHCCHHHHHHHHHHHH----HCCC-----CHHHHHHHHHHHHHHHHC-CCHHHH--HHHHHHHHHHHHHCCC---
T ss_conf 634--3133299999999998----5679-----789999999999999864-638799--8899999999987179---
Q ss_pred CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 89999994664202516789999999999999948999998433999999999738999999999999451896358899
Q 003608 239 SEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRV 318 (808)
Q Consensus 239 ~~~~~~d~~~~~~~~~~~~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (808)
.| ..+++++++++..+...++. +...+.+.++..+++.+.. ..+.+
T Consensus 227 -----~~---------~~vr~~a~~~L~~l~~~~~~--------------~~~~~l~~l~~~l~~~~~~------~~~~v 272 (852)
T 4fdd_A 227 -----EE---------PEVRKNVCRALVMLLEVRMD--------------RLLPHMHNIVEYMLQRTQD------QDENV 272 (852)
T ss_dssp -----CC---------HHHHHHHHHHHHHHHHHCHH--------------HHGGGHHHHHHHHHHHHTC------SSHHH
T ss_pred -----CC---------HHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHCCC------CCHHH
T ss_conf -----97---------78999999999999985779--------------8998899999999987069------96899
Q ss_pred HHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999832277011564033399999997730566793257543119889997823632334797889999999999
Q 003608 319 TNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELV 398 (808)
Q Consensus 319 ~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~ 398 (808)
+..+++||.++++.+..++.++|.+..++..+ ++.+.++++|.+.|+.|+++.- ++|+..+.+++|.+|...+..++
T Consensus 273 r~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~l-l~~l~~~e~d~~~~~~d~~ed~--~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 273 ALEACEFWLTLAEQPICKDVLVRHLPKLIPVL-VNGMKYSDIDIILLKGDVEGGS--GGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHH-HHHTSCCHHHHHHHHC--------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999998603657988788898899999-9875786767998669844322--24564011169999999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 73060119999999999731257998788633558799999999778743079546889999845045556688865004
Q 003608 399 RKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRA 478 (808)
Q Consensus 399 ~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~~~~~~lr~ 478 (808)
+..++.+++.+++++.+.+++ .+|+.|++++.++|.+++++.+. ....++.++ ..+.+.+.++++.+|.
T Consensus 350 ~~~~~~~~~~l~~~l~~~l~~--------~~~~~R~aa~~alg~i~~~~~~~--~~~~l~~~l-~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 350 NVYRDELLPHILPLLKELLFH--------HEWVVKESGILVLGAIAEGCMQG--MIPYLPELI-PHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHGGGGHHHHHHHHHHHHTC--------SSHHHHHHHHHHHHHTTTTTHHH--HGGGHHHHH-HHHHHHTTCSSHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHH-HHHHHHCCCCCHHHHH
T ss_conf 746187899999999998559--------98899999999999998635688--998799999-9999871799889999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 799999741116447--954799999999822899998428869999999997033431100213999999999851110
Q 003608 479 KAAWVAGQYAHINFS--DQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVE 556 (808)
Q Consensus 479 ra~~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~~~p~l~~ll~~l~~ll~~~~ 556 (808)
.++|++|+++++... ...++..+++.+++.+.|++..||..|+.|+..+++.. .+.+.||++.+++.|+.+++..+
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~--~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA--CTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH--GGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999886110478999999999999985898889999999999999973--67667679999999999998837
Q ss_pred HHH------------------------------------------------HHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 113------------------------------------------------89999999996045630009989999999
Q 003608 557 NED------------------------------------------------LVFTLETIVDKFGEEMAPYALGLCQNLAA 588 (808)
Q Consensus 557 ~~~------------------------------------------------l~~~l~~iv~~~~~~i~p~~~~l~~~L~~ 588 (808)
... +..+++.++..+++.+.||.+.++..+..
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~ 576 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVN 576 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47999999999999997424313678999988999999873330469999999999999999748679889999999999
Q ss_pred HHHHHHHCC---CCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999998213---6899--9998357899999999999999523874789977-764899999970127145899999999
Q 003608 589 AFWRCMNTA---EADE--DADDPGALAAVGCLRAISTILESVSRLPHLFVQI-EPTLLPIMRRMLTTDGQEVFEEVLEIV 662 (808)
Q Consensus 589 ~~~~~~~~~---~~~~--~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l-~~~~~p~i~~~l~~~~~~~~e~~l~ll 662 (808)
.+...+... ..++ .+.+++. .....+++++.+++.++.+-..+ + .+.++|.+..+++.+..+..+.++.++
T Consensus 577 ~l~~~l~~~~~~~~~~~~~~~~d~~-~~~~~l~~l~~l~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~~vr~~a~~~l 653 (852)
T 4fdd_A 577 LVQKTLAQAMLNNAQPDQYEAPDKD-FMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALL 653 (852)
T ss_dssp HHHHHHHHHHHHHHCTTTSCCCCTH-HHHHHHHHHHHHHHHHGGGGHHH--HHTCCHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999998753388666887611-99999999978999874769988--36771899999983899844999999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9955049-999965566499999996446975561244321114312721223668940799999999997617899987
Q 003608 663 SYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 741 (808)
Q Consensus 663 ~~~~~~~-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~~~~ 741 (808)
+.+.... ..+.|.+..++|.+.+.+.....+........+..++...++.+. +|...++..+.+++.++.....
T Consensus 654 ~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~-----p~~~~il~~L~~~l~~~~~~~~ 728 (852)
T 4fdd_A 654 GDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ-----PYIPMVLHQLVEIINRPNTPKT 728 (852)
T ss_dssp HHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGG-----GGTHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999816888987999999999876942068999999999999997117678-----7899999999998579988720
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 55735489999999837586222177999999998500112899999999987072180778985
Q 003608 742 DIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVVSFHERANSDLSIIV 806 (808)
Q Consensus 742 ~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 806 (808)
-...++..++.+...+|..+.|+++.+++..+..|....+...+...+..++..+..||+..+..
T Consensus 729 ~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~ 793 (852)
T 4fdd_A 729 LLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD 793 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred HHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 77889999999998688976755899999999986536660799999999999998691868888
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=420.70 Aligned_cols=589 Identities=12% Similarity=0.167 Sum_probs=399.9
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99388999999723999778999999999720598729999999972376845679999999887742069999886899
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (808)
Q Consensus 1 Md~~~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (808)
||++++.++++++++||++.|++||++|++++++|+++..+.+++.+ +.+..+|++|+++|||.|+++|..
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~-------- 83 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKL-------- 83 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGG--------
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHCCC--------
T ss_conf 65999999999986899389999999999988395699999999862-998899999999999999760704--------
Q ss_pred CCHHHHHHHHHHHHHHHHC-C--------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH--HHHHHHHHHHH
Q ss_conf 9956799999999999712-8--------95889999999999996309999724799999871033--19999999999
Q 003608 81 ISQVDKDMVRDHILVFVAQ-V--------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (808)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~-~--------~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~ 149 (808)
+++++|..||+.+++.+.. + ++.||++++.+++.|++.|||++||++++.+++.++++ ....++.+|..
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL 163 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999862776200000289999999999999997681115479999999871585889999999999
Q ss_pred HHHHCC-CCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCC-------
Q ss_conf 999714-6786----78514899999986999999999740459981499999999999677654-0487122-------
Q 003608 150 LSRKYE-FKSD----EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIPKQL------- 216 (808)
Q Consensus 150 i~~~~~-~~~~----~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~-~~~p~~~------- 216 (808)
++++.. +.++ ..+..+...+...++.+++++.+.++... ...++..+++++.++.. .+.+..+
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~----~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~ 239 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS----SSSLIVATLESLLRYLHWIPYRYIYETNILEL 239 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999872600132689999999999999999999999998668----88999999999999986088998860559999
Q ss_pred ------CCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHH-----------HHHCCCCCCC
Q ss_conf ------79221789999999981589998999999466420251678999999999999-----------9948999998
Q 003608 217 ------LDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLY-----------TRFGDLKLQN 279 (808)
Q Consensus 217 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~kk~~~~~l~~l~-----------~~~~~~~~~~ 279 (808)
.+++....++..+..+++...+ +.+.... .++.++.-.++..+. ..|+.....+
T Consensus 240 l~~~~l~~~~~~~~a~~~L~~i~~~~~~----~~~~~~~-----~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d 310 (1049)
T 3m1i_C 240 LSTKFMTSPDTRAITLKCLTEVSNLKIP----QDNDLIK-----RQTVLFFQNTLQQIATSVMPVTADLKATYANANGND 310 (1049)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHCCCC----TTCHHHH-----HHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCC----CCHHHHH-----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCH
T ss_conf 9998689876799999999999948899----5034688-----999999999999998862798541787744577102
Q ss_pred HHH-HHHHHHHHH---HH---------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC----CCHHHHHCHHH
Q ss_conf 433-999999999---73---------89999999999994518963588999999999983227----70115640333
Q 003608 280 PEN-RAFAQMFQK---NY---------AGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSIS----KNSMYNLLQPR 342 (808)
Q Consensus 280 ~~~-~~f~~~f~~---~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~----~~~~~~~~~~~ 342 (808)
.++ ..++..|.. .+ ....+..+++.+-.... ...+.+...+++||.++++ .+..+..+++.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~--~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~ 388 (1049)
T 3m1i_C 311 QSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSK--IEERELFKTTLDYWHNLVADLFYEPLKKHIYEEI 388 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 89999999999999999999982882147999999999999886--8908999999999999999997463589999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999977305667932575431-1988999782363233479788999999999973060119999999999731257
Q 003608 343 LDVLLFEIVFPLMCFNDNDQKLWD-EDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYD 421 (808)
Q Consensus 343 l~~li~~li~~~l~l~~~d~e~we-~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~ 421 (808)
+..++.. +++.|.+.+ |. .|. +|+.|++++..++. |.++.|.++.+++..++...+..+++.+.+++.+.++.
T Consensus 389 l~~Lv~~-ll~~m~~~e-d~-~~~~dd~~e~~r~~~~d~-d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~-- 462 (1049)
T 3m1i_C 389 CSQLRLV-IIENMVRPE-EV-LVVENDEGEIVREFVKES-DTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDG-- 462 (1049)
T ss_dssp HHHHHHH-HHHTCCCCT-TC-CEEECTTSCEEECSSCCH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHH-HHHHCCCCC-CE-EEEECCCCCCHHHHHCCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--
T ss_conf 9999999-998658996-20-000579985048653122-27999999999999988369899999999999987277--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99878863355879999999977874307--95468899998450455566---88865004799999741116447954
Q 003608 422 ETPVEYKPYRQKDGALLAIGALCDKLKQT--EPYKSELERMLVQHVFPEFS---SPVGHLRAKAAWVAGQYAHINFSDQN 496 (808)
Q Consensus 422 ~~~~~~~~~~~~ea~l~~l~~~~~~l~~~--~~~~~~~~~~l~~~i~~~l~---~~~~~lr~ra~~~l~~~~~~~~~~~~ 496 (808)
+ ..+|+.+||+++++|++++.+.+. ..+..++.+++.. ++++. +++|.+|.++||++|+|+++...+++
T Consensus 463 --~--~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~ 536 (1049)
T 3m1i_C 463 --S--EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN 536 (1049)
T ss_dssp --S--SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH
T ss_pred --C--CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --8--789899999999999986023762557999999999998--7765435665499998899999977999986789
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--------CCCHHHHHHHHHHHHHHHCHHH---HHHHHH
Q ss_conf 79999999982289999842886999999999703343110--------0213999999999851110113---899999
Q 003608 497 NFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEI--------RPILPQLLDEFFKLMNEVENED---LVFTLE 565 (808)
Q Consensus 497 ~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~~--------~p~l~~ll~~l~~ll~~~~~~~---l~~~l~ 565 (808)
++..+++.++..|.+++++|+.+||.|+.++++.+ +..+ .||++++++.+..++++.+.+. +..++.
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999861898789999999999999998--8986115677877579999998999998589999999999999
Q ss_pred HHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999604--5630009989999999999998213689999--983578999999999999995238
Q 003608 566 TIVDKFG--EEMAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSR 627 (808)
Q Consensus 566 ~iv~~~~--~~i~p~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~i~~li~~~~~ 627 (808)
.++...+ +...++...+++.+.+.|.++.+....++++ +.+.......+++|++.++.+++.
T Consensus 615 ~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~ 680 (1049)
T 3m1i_C 615 IIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA 680 (1049)
T ss_dssp HHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999759978999999999998899999999998731646404879999999999999999998567
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=406.08 Aligned_cols=732 Identities=13% Similarity=0.159 Sum_probs=466.7
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99388999999723999778999999999720598729999999972376845679999999887742069999886899
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (808)
Q Consensus 1 Md~~~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (808)
||++++.++++.+++||++.|++||++|++++++|++|..+.+++.+ +.+..+|++|+++|||+|+++|..
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~-------- 74 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHE-------- 74 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCHHH--------
T ss_conf 55999999999876999999999999999987497989999999835-994989999999999999715864--------
Q ss_pred CCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH-------H--HHHHHHHHHH
Q ss_conf 9956799999999999712---89588999999999999630999972479999987103-------3--1999999999
Q 003608 81 ISQVDKDMVRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD-------Q--QVYGALFVLR 148 (808)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~---~~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s-------~--~~~~~L~~L~ 148 (808)
+|+++|..||+.+++.+.+ .++.||++++.+++.|++.+|| .||++++++.+.+++ + ....++.+|.
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~ 153 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLT 153 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999986799878999999999999997062-24379999999971533456787889999999999
Q ss_pred HHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHH
Q ss_conf 999971-46786785148999999869999999997404599---814999999999996776540-4871227922178
Q 003608 149 ILSRKY-EFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNP---SLEVADLIKLICKIFWSSIYL-EIPKQLLDPNVFN 223 (808)
Q Consensus 149 ~i~~~~-~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~~~~~~-~~p~~~~~~~~~~ 223 (808)
.++++. +++....|..+...+...+|.+++++.+.++.... +.....++..+++|+..+... .+|.. ...
T Consensus 154 ~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-----~~~ 228 (971)
T 2x1g_F 154 AIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-----GCV 228 (971)
T ss_dssp HHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-----GHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC-----CCC
T ss_conf 859988246857899999999998799999999999855467888864236799999999999825783865-----663
Q ss_pred HHHHHHHHHHC-----CCC-CCCCCCC--CHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHC---CCCCC
Q ss_conf 99999999815-----899-9899999--94664202--------------516789999999999999948---99999
Q 003608 224 AWMILFLNVLE-----RPV-PSEGEPA--DPEQRKSW--------------GWWKVKKWTVHILNRLYTRFG---DLKLQ 278 (808)
Q Consensus 224 ~~~~~~~~~l~-----~~~-~~~~~~~--d~~~~~~~--------------~~~~~kk~~~~~l~~l~~~~~---~~~~~ 278 (808)
.+++.+.. +. ... ...+... +++.++.. ...+.-..++..+..+...+. ...-.
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred CHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 19999986-43553023235665556767747999999999999768011320889999999999868999999856565
Q ss_pred --CHHHHHHHHHHH---HHHH--------------HHHHHHHHH-HHHHH-HCCCC-CCHHHHHHHHHHHHHHCC-----
Q ss_conf --843399999999---9738--------------999999999-99945-18963-588999999999983227-----
Q 003608 279 --NPENRAFAQMFQ---KNYA--------------GKILECHLN-LLNRI-RVGGY-LPDRVTNLILQYLSNSIS----- 331 (808)
Q Consensus 279 --~~~~~~f~~~f~---~~~~--------------~~~~~~~~~-~l~~~-~~~~~-~~~~~~~~~l~fl~~~~~----- 331 (808)
+.....+++.|. +.+. +..+..+++ ++... ..+.+ ..+++...+++||..+++
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 40689999999999999999999998731576535499999999999997588888863124587899999999999741
Q ss_pred -----CCHHHHHCHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf -----701156403339999999773056679-32575431198899978236323347978899999999997306011
Q 003608 332 -----KNSMYNLLQPRLDVLLFEIVFPLMCFN-DNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKEN 405 (808)
Q Consensus 332 -----~~~~~~~~~~~l~~li~~li~~~l~l~-~~d~e~we~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~ 405 (808)
.+..+..+++.+..++..++.+. .+. +++.+.| |++| + +++.++|.++.+++..++...++.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~p~~~~~~~~--d~~e--~------~~f~~~R~~~~~~l~~~~~~~~~~~ 456 (971)
T 2x1g_F 388 SNDEQKHKCWEYIKPLYAHLTRILVRKS-EQPDEKSLAKW--SSDD--L------ECFRCYRQDISDTFMYCYDVLNDYI 456 (971)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHT-SCCCTTTTSCS--CHHH--H------HHHHHHHHHHHHHHHHHHTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCC--CHHH--H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3310008999999999999999999986-19996243356--7757--9------9999999999999999999970999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC--CCCCCHHHHHHHH
Q ss_conf 99999999997312579987886335587999999997787430795468899998450455566--8886500479999
Q 003608 406 LQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS--SPVGHLRAKAAWV 483 (808)
Q Consensus 406 ~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~--~~~~~lr~ra~~~ 483 (808)
++.+++++.+.++++..++ .+|+.+||+++++|++++++.+.. ...++.++. +++.+. +++|.+|.++||+
T Consensus 457 l~~~~~~l~~~l~~~~~~~---~~w~~~eaal~~l~~iae~~~~~~--~~~l~~l~~--~l~~l~~~d~~~~vr~~a~~~ 529 (971)
T 2x1g_F 457 LEILAAMLDEAIADLQRHP---THWTKLEACIYSFQSVAEHFGGEE--KRQIPRLMR--VLAEIPYEKLNVKLLGTALET 529 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHTTTC--------CHHHHHHH--HHHHSCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHH--HHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999999999997346898---738999999999999983548033--477999999--998567653678999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH--CHHH--
Q ss_conf 974111644795479999999982289999842886999999999703343110021399999999985111--0113--
Q 003608 484 AGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV--ENED-- 559 (808)
Q Consensus 484 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~~~p~l~~ll~~l~~ll~~~--~~~~-- 559 (808)
+|+|+++...+++++..+++.++..| + +.|+.+||.|+.++++.+ ++.+.||++++++.+..++++. +.+.
T Consensus 530 l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~ 604 (971)
T 2x1g_F 530 MGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSV 604 (971)
T ss_dssp HHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH-C--HHHHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99878888608898999999999874-8--588999999999999998--886230079999999999727899928999
Q ss_pred -HHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC---------
Q ss_conf -8999999999604-56300099899999999999982136899999835789999999999999952387---------
Q 003608 560 -LVFTLETIVDKFG-EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRL--------- 628 (808)
Q Consensus 560 -l~~~l~~iv~~~~-~~i~p~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~li~~~~~~--------- 628 (808)
+..++..++...+ ++..|+...++..+.+.+.++.+....+ ++........++++++++++++..
T Consensus 605 ~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~----~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~ 680 (971)
T 2x1g_F 605 RLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT----PAARIRTIFRLNMISTLFSSLNTDVDEQATDQP 680 (971)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C----HHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999999999729999999999999989999999998568998----225999999999999998416777685333456
Q ss_pred -HHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -4789977764899999970127--145899999999995504-999996556649999999644697556124432111
Q 003608 629 -PHLFVQIEPTLLPIMRRMLTTD--GQEVFEEVLEIVSYMTFF-SPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDN 704 (808)
Q Consensus 629 -~~~~~~l~~~~~p~i~~~l~~~--~~~~~e~~l~ll~~~~~~-~~~~~p~~~~l~~~l~~~~~~~~~~~~~~~~~~L~~ 704 (808)
++.+..+.+.++|++..+++.. ..++.++++.++..++.. .+.+.|.++.+++.+...+.+.. ....+.++..
T Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~---~~~~l~l~~~ 757 (971)
T 2x1g_F 681 IVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC---CAPTLEISKT 757 (971)
T ss_dssp ---CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C---CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHHHHH
T ss_conf 7883699999999999999986436378999999999999986144042527899999999986688---3499999999
Q ss_pred HHCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCC---CC-CCCC-CCCHHHHHHHHHHHCCCCC--CCC-HHHHHHHHHHH
Q ss_conf 4312-7212236689407999999999976178---99-9875-5735489999999837586--222-17799999999
Q 003608 705 YISR-GTAHFLTCKEPDYQQSLWSMVSSIMADK---NL-EDGD-IEPAPKLIEVVFQNCKGQV--DHW-VEPYLRITVER 775 (808)
Q Consensus 705 ~i~~-~~~~~l~~~~~~~~~~i~~~~~~~l~~~---~~-~~~~-~~~a~~ll~~ii~~~~~~~--~~~-l~~il~~~l~~ 775 (808)
.+.. |.+.-....-.+....+...+-..+... .. +..| ....+.++..++.++|..+ .+. ++.+++.++..
T Consensus 758 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~ 837 (971)
T 2x1g_F 758 AIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRG 837 (971)
T ss_dssp HHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHH
T ss_conf 99995889005899999999999999999860654677648448999999999999868599818821289999999998
Q ss_pred HHH
Q ss_conf 850
Q 003608 776 LRR 778 (808)
Q Consensus 776 l~~ 778 (808)
+..
T Consensus 838 l~~ 840 (971)
T 2x1g_F 838 MTL 840 (971)
T ss_dssp HTS
T ss_pred CCC
T ss_conf 287
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=405.57 Aligned_cols=719 Identities=13% Similarity=0.182 Sum_probs=458.8
Q ss_pred CCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 993889999997-2399977899999999972059872999999997237684567999999988774206999988689
Q 003608 1 MDLPSLALILQG-ALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ 79 (808)
Q Consensus 1 Md~~~l~~~L~~-~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~ 79 (808)
||++++.+++++ ..++|++.|++||++|++++++|+++..+..++.+ +.+..+|++|+++|||+|+++|..
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~------- 92 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSD------- 92 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGG-------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCHHH-------
T ss_conf 559999999999835979899999999999984699999999998657-972588999999999999738874-------
Q ss_pred CCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCH------H--HHHHHHHHHH
Q ss_conf 99956799999999999712---89588999999999999630999972479999987103------3--1999999999
Q 003608 80 KISQVDKDMVRDHILVFVAQ---VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQD------Q--QVYGALFVLR 148 (808)
Q Consensus 80 ~i~~~~k~~ir~~ll~~l~~---~~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s------~--~~~~~L~~L~ 148 (808)
+++++|..||+.+++.+.+ .++.||++++.+++.|++.|||++||++++++.+.+++ + ....++.+|.
T Consensus 93 -l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 93 -IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp -SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf -9999999999999999998748988999999999999998748311555999999998643357874788999999998
Q ss_pred HHHHHCC-CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC------------
Q ss_conf 9999714-678-67851489999998699999999974045998149999999999967765404871------------
Q 003608 149 ILSRKYE-FKS-DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK------------ 214 (808)
Q Consensus 149 ~i~~~~~-~~~-~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~------------ 214 (808)
.++++.. ++. .+.|..+...+...+|.+++++...++....+ ..+...+++|+.+++..+.+.
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~---~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~ 248 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSP---SCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFA 248 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCC---HHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHH
T ss_pred HCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 68998850658699999999999987889999999998277880---579999999999998289985341689999999
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHH-----------H----HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 227922178999999998158999899999946642025167-----------8----9999999999999948999998
Q 003608 215 QLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWK-----------V----KKWTVHILNRLYTRFGDLKLQN 279 (808)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~-----------~----kk~~~~~l~~l~~~~~~~~~~~ 279 (808)
.+.+.+....++..+..++....+. .-... ...++. . ..|..+.+.+++..|+..
T Consensus 249 ~l~~~~~~~~a~~~l~~i~~~~~~~----~~~~~--~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~---- 318 (963)
T 2x19_B 249 ALQDSELFDSSVEAIVNAISQPDAQ----RYVNT--LLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGEN---- 318 (963)
T ss_dssp HTTSTTTHHHHHHHHHHHHTCTTGG----GCHHH--HHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCC----CCHHH--HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
T ss_conf 8679647999999999997531124----57799--9999999974079999999877989999999999999998----
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHC-CCC-CCHHHHHHHHHHHHHHCCC---------CHHHHHCHHHHHHH
Q ss_conf 43399999999973-89999999999994-518-963-5889999999999832277---------01156403339999
Q 003608 280 PENRAFAQMFQKNY-AGKILECHLNLLNR-IRV-GGY-LPDRVTNLILQYLSNSISK---------NSMYNLLQPRLDVL 346 (808)
Q Consensus 280 ~~~~~f~~~f~~~~-~~~~~~~~~~~l~~-~~~-~~~-~~~~~~~~~l~fl~~~~~~---------~~~~~~~~~~l~~l 346 (808)
....+.+.. .+..+..+++.+-. ... +.| ..+++...+++||..+++. +..+..+++.+..+
T Consensus 319 -----~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 393 (963)
T 2x19_B 319 -----HSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQL 393 (963)
T ss_dssp -----HHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----699997375565899999999999975888887203454412999999999998623444578899999999999
Q ss_pred HHHHHHHCCCCCHHH-HHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999773056679325-7543119889997823632334797889999999999730601199999999997312579987
Q 003608 347 LFEIVFPLMCFNDND-QKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPV 425 (808)
Q Consensus 347 i~~li~~~l~l~~~d-~e~we~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~ 425 (808)
+..++ +.+...+++ .+.|++|++ +++.+.|.++.+++..++...++.+++.+++++.+.++++.+
T Consensus 394 ~~~ll-~~~~~p~~~~~~~~~~de~----------~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~--- 459 (963)
T 2x19_B 394 VDVLL-HKAQFPSDEEYGFWSSDEK----------EQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEE--- 459 (963)
T ss_dssp HHHHH-HHHSCCCHHHHHTSCHHHH----------HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCC---
T ss_pred HHHHH-HHHCCCCCCCCCCCCHHHH----------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf 99999-9980998302267776389----------999999999999999999970689999999999999972579---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 88633558799999999778743079546889999845045556688865004799999741116447954799999999
Q 003608 426 EYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSV 505 (808)
Q Consensus 426 ~~~~~~~~ea~l~~l~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~~~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l 505 (808)
..+|+.+||+++++|++++++.+.. ...+..++. +++.+.+++|.+|.++||++|+|+++...+++++..+++.+
T Consensus 460 -~~~w~~~eaal~al~~i~~~~~~~~--~~~l~~l~~--~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l 534 (963)
T 2x19_B 460 -PYSWQHTEALLYGFQSIAETIDVNY--SDVVPGLIG--LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLV 534 (963)
T ss_dssp -SCCHHHHHHHHHHHHHHTTSCCSSC--CSHHHHHHH--HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHH--HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf -9866799899999999970438224--678999999--99857998589999999999988888875889899999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH--CHH---HHHHHHHHHHHHCC-CCCCCHH
Q ss_conf 82289999842886999999999703343110021399999999985111--011---38999999999604-5630009
Q 003608 506 VSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEV--ENE---DLVFTLETIVDKFG-EEMAPYA 579 (808)
Q Consensus 506 ~~~l~~~~~~V~~~A~~al~~~~~~~~~~~~~~p~l~~ll~~l~~ll~~~--~~~---~l~~~l~~iv~~~~-~~i~p~~ 579 (808)
++.|++ +.|+.+||.|+.++++.+ ++.+.||++++++.+..++++. +.+ .+..+++.++...+ ++..||.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHCC--CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 987178--468999999999999998--9987766999999999986357898488999999999999629999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHHHHHH
Q ss_conf 989999999999998213689999983578999999999999995238-------------------7478997776489
Q 003608 580 LGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSR-------------------LPHLFVQIEPTLL 640 (808)
Q Consensus 580 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~li~~~~~-------------------~~~~~~~l~~~~~ 640 (808)
..+++.+.+.|.++.++. .++ +........+++++.++++++. .+..+..+.+.++
T Consensus 611 ~~l~~~l~~~l~~~~~~~-~~~----~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (963)
T 2x19_B 611 HSLISPYIQQLEKLAEEI-PNP----SNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF 685 (963)
T ss_dssp HHHHHHHHHHHHHHHSSC-SCH----HHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999989999999998278-987----789999999999999997748986433222322124777788994699999999
Q ss_pred HHHHHHCCCC--HHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCC
Q ss_conf 9999970127--1458999999999955049-99996556649999999644697556124432111431--27212236
Q 003608 641 PIMRRMLTTD--GQEVFEEVLEIVSYMTFFS-PTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYIS--RGTAHFLT 715 (808)
Q Consensus 641 p~i~~~l~~~--~~~~~e~~l~ll~~~~~~~-~~~~p~~~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~--~~~~~~l~ 715 (808)
|.+..+++.. ..+..+.++.++..++... ..+.|.+..+++.+...... ...+..+.++..++. ...+.+..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST---IPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH---SCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999856674689999999999999750103424079999999999875---7850899999999998577801378
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHCCCCC--CCC-HHHHHHHHHHHHHH
Q ss_conf 689407999999999976178999875-5735489999999837586--222-17799999999850
Q 003608 716 CKEPDYQQSLWSMVSSIMADKNLEDGD-IEPAPKLIEVVFQNCKGQV--DHW-VEPYLRITVERLRR 778 (808)
Q Consensus 716 ~~~~~~~~~i~~~~~~~l~~~~~~~~~-~~~a~~ll~~ii~~~~~~~--~~~-l~~il~~~l~~l~~ 778 (808)
.-...++.+++..-.+++..-.+..| ....+.++..++.+++..+ .+. ++.++..++..+..
T Consensus 763 -~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 828 (963)
T 2x19_B 763 -PIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF 828 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf -999999999999999986276558638999999999999758398729851479999999997578
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=389.53 Aligned_cols=692 Identities=14% Similarity=0.215 Sum_probs=464.6
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC--
Q ss_conf 9938899999972-399977899999999972059--87299999999723768456799999998877420699998--
Q 003608 1 MDLPSLALILQGA-LSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-- 75 (808)
Q Consensus 1 Md~~~l~~~L~~~-ls~d~~~r~~AE~~L~~~~~~--p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~-- 75 (808)
||++++.++|+++ +|||++.|++||++|++++++ |+|+..|++++.+.+.+..+|++|+++|||.|+++|....+
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899867999999998702257574878999
Q ss_pred -CCCCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCHH----HHHHHHHHHH
Q ss_conf -86899-99567999999999997128958899999999999963099-99724799999871033----1999999999
Q 003608 76 -NEQQK-ISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ----QVYGALFVLR 148 (808)
Q Consensus 76 -~~~~~-i~~~~k~~ir~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~----~~~~~L~~L~ 148 (808)
..|.. +++++|..||+.+++.+.+++..+|++++.+++.|++.+|| +.||++++.+.+.++++ ..++++.++.
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~ 160 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 97676629999999999999998779963799999999999998467645549999999998726897899999999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 99997146786785148999999869999999997404599814999999999996776540487122792217899999
Q 003608 149 ILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMIL 228 (808)
Q Consensus 149 ~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (808)
.+++++.. +.+ .+....+.+++.+ ...+.++.+ ...++..+++++..+... +...+.........++.
T Consensus 161 ~l~~~~~~---~~~-~~~~~~~~ll~~l----~~~l~~~~~---~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~~ll~~ 228 (861)
T 2bpt_A 161 YMCESADP---QSQ-ALVSSSNNILIAI----VQGAQSTET---SKAVRLAALNALADSLIF-IKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHTSST---TSS-TTGGGHHHHHHHH----HHHHSTTCC---CHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHH
T ss_pred HHHHCCCH---HHH-HHHHHHHHHHHHH----HHHHCCCCC---CHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHH
T ss_conf 99972784---356-7898899999999----984157999---878999999999999999-99870676689999999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 9998158999899999946642025167899999999999999489999984339999999997389-999999999994
Q 003608 229 FLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNLLNR 307 (808)
Q Consensus 229 ~~~~l~~~~~~~~~~~d~~~~~~~~~~~~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~-~~~~~~~~~l~~ 307 (808)
+...++. .+ ++.++++++++..+...++.. | .++.+ .++..++..+.
T Consensus 229 l~~~~~~--------~~---------~~~r~~a~~~l~~l~~~~~~~-------------~-~~~l~~~l~~~~~~~~~- 276 (861)
T 2bpt_A 229 VCEATQA--------ED---------IEVQAAAFGCLCKIMSKYYTF-------------M-KPYMEQALYALTIATMK- 276 (861)
T ss_dssp HHHHHTC--------SC---------HHHHHHHHHHHHHHHHHHGGG-------------C-HHHHHHTHHHHHHHHTT-
T ss_pred HHHHHCC--------CC---------HHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHHHHHHHHHHHC-
T ss_conf 9998659--------98---------899999999999999998899-------------9-99889999999999873-
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCHHH---------------HHCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHH
Q ss_conf 51896358899999999998322770115---------------640333999999977305667932575431198899
Q 003608 308 IRVGGYLPDRVTNLILQYLSNSISKNSMY---------------NLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEY 372 (808)
Q Consensus 308 ~~~~~~~~~~~~~~~l~fl~~~~~~~~~~---------------~~~~~~l~~li~~li~~~l~l~~~d~e~we~Dp~ef 372 (808)
...++++..+++||..+++..... +.+++.+..++..++ ..+. +.+ +|
T Consensus 277 -----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll-~~l~--~~~-----~d---- 339 (861)
T 2bpt_A 277 -----SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLL-NLLT--RQN-----ED---- 339 (861)
T ss_dssp -----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHH-HHTT--CCC-----CC----
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH-HHHH--HCC-----CC----
T ss_conf -----772789999999999999878864333210357732569999999988999999-9987--066-----53----
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 97823632334797889999999999730601199999999997312579987886335587999999997787430795
Q 003608 373 VRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEP 452 (808)
Q Consensus 373 i~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~~~~ 452 (808)
..+|.+++|.+|.+.+..++..+++.+++.+++++.+.+++ .+|+.|++++.++|.+++++... .
T Consensus 340 ------~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~-~ 404 (861)
T 2bpt_A 340 ------PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA--------DNWRNREAAVMAFGSIMDGPDKV-Q 404 (861)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHH-H
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHCCCCHH-H
T ss_conf ------01246868999999999999874086899999999987579--------97269999999999998599878-8
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4688999984504555668886500479999974111644---7954799999999822899998428869999999997
Q 003608 453 YKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINF---SDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVE 529 (808)
Q Consensus 453 ~~~~~~~~l~~~i~~~l~~~~~~lr~ra~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~ 529 (808)
+...++.++ ..+.+.+.++++.+|.+++|++|+++++.. .+..++..+++.++..++++ ..||..||.++..+++
T Consensus 405 ~~~~l~~il-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 405 RTYYVHQAL-PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHHHHH-HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_conf 899899999-99998828995999999999999999873540487888999999999976447-2899999999999998
Q ss_pred HCC--CCCCCCCCHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCC
Q ss_conf 033--43110021399999999985111011-----389999999996045630009989999999999998213--689
Q 003608 530 ACR--DLNEIRPILPQLLDEFFKLMNEVENE-----DLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTA--EAD 600 (808)
Q Consensus 530 ~~~--~~~~~~p~l~~ll~~l~~ll~~~~~~-----~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~--~~~ 600 (808)
.+. .++.+.||++.+++.++.++++.+.+ ....+++.++...++++.||...++..+...+.+..... ...
T Consensus 483 ~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~ 562 (861)
T 2bpt_A 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp HHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 62313542468999999999999985758615899999999999999762656999999999999999988753201388
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHCC-CCCCHHHHH
Q ss_conf 9999835789999999999999952387478997776489999997012714-58999999999955049-999965566
Q 003608 601 EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQ-EVFEEVLEIVSYMTFFS-PTISLEMWS 678 (808)
Q Consensus 601 ~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~~l~~~~~-~~~e~~l~ll~~~~~~~-~~~~p~~~~ 678 (808)
+.+++.....+..++++++.++..++.. +....+.++|.+...++.... ...+.++..++.++... ..+.|.+..
T Consensus 563 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~ 639 (861)
T 2bpt_A 563 LEDAQSLQELQSNILTVLAAVIRKSPSS---VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGG---TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5567779999999999999999985563---4789999999999997467887579999999999999976609999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 49999999644697556124432111431272122366894079999999999761789998755735489999999837
Q 003608 679 LWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCK 758 (808)
Q Consensus 679 l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~ 758 (808)
++|.+.+.+.+...+.......++...+...++.+. .+...++..+.+.+.+++.+..-+..+...+..++..++
T Consensus 640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFR-----RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGH-----HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999886556678999999999999987454031-----119999999999727865567665999999999999840
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 58622217799999999850
Q 003608 759 GQVDHWVEPYLRITVERLRR 778 (808)
Q Consensus 759 ~~~~~~l~~il~~~l~~l~~ 778 (808)
+.+.+|++.+++.+++.+..
T Consensus 715 ~~~~~~l~~~l~~l~~~~~~ 734 (861)
T 2bpt_A 715 ADFIPYLNDIMALCVAAQNT 734 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 50899999999999999736
No 7
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=345.99 Aligned_cols=586 Identities=13% Similarity=0.180 Sum_probs=369.8
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99388999999723999778999999999720598729999999972376845679999999887742069999886899
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (808)
Q Consensus 1 Md~~~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (808)
||++.+.++++..++|+++.|++|+++|++++++|++|..+..++.+ +.+..+|++|+++|||+|+++|..
T Consensus 13 ~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~~W~~-------- 83 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKL-------- 83 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHHHGGG--------
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHC--------
T ss_conf 99999999999984999599999999999987195488899999538-998899999999999999761112--------
Q ss_pred CCHHHHHHHHHHHHHHHHC---C------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH--HHHHHHHHHHH
Q ss_conf 9956799999999999712---8------95889999999999996309999724799999871033--19999999999
Q 003608 81 ISQVDKDMVRDHILVFVAQ---V------PPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (808)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~---~------~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~ 149 (808)
+++++|..||+.+++.+.. . ++.++++++.+++.|++.+||+.||++++++.+.++++ ....+|.+|..
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~~ 163 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKL 163 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999986578522223199999999999999998573323289999999856997789999999999
Q ss_pred HHHHC-CCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCC-----
Q ss_conf 99971-46786----7851489999998699999999974045998149999999999967765404871-2279-----
Q 003608 150 LSRKY-EFKSD----EERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPK-QLLD----- 218 (808)
Q Consensus 150 i~~~~-~~~~~----~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~-~~~~----- 218 (808)
+.++. .+.++ ..+..+...+...+|.+.+++...+....+ ..+...+++|++++.. -+|. ...+
T Consensus 164 L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~----~~l~~~~L~~l~s~l~-WI~i~~i~~~~ll~ 238 (1023)
T 4hat_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGAS----SSLIVATLESLLRYLH-WIPYRYIYETNILE 238 (1023)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTT-TSCTHHHHSSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHH-HCCHHHHCCHHHHH
T ss_conf 999998710000159998889999999899999999999827898----8999999999999998-48998751444999
Q ss_pred ---------HHHHHHHHHHHHHHHCCCCCCCCCCCC--HHHHHHCCCHHHHHHHHHHHHHH-----------HHHHCCCC
Q ss_conf ---------221789999999981589998999999--46642025167899999999999-----------99948999
Q 003608 219 ---------PNVFNAWMILFLNVLERPVPSEGEPAD--PEQRKSWGWWKVKKWTVHILNRL-----------YTRFGDLK 276 (808)
Q Consensus 219 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~d--~~~~~~~~~~~~kk~~~~~l~~l-----------~~~~~~~~ 276 (808)
++....-+..+..+++...+ .+ ..+. ......-..+..+ ...|....
T Consensus 239 ~l~~~~L~~~~~r~~A~ecL~eIv~~~~~-----~~~~~~~~------~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~ 307 (1023)
T 4hat_C 239 LLSTKFMTSPDTRAITLKCLTEVSNLKIP-----QDNDLIKR------QTVLFFQNTLQQIATSVMPVTADLKATYANAN 307 (1023)
T ss_dssp HHHTHHHHSHHHHHHHHHHHHHHHTSCCC-----SSCHHHHH------HHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----CCHHHHHH------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
T ss_conf 99998769878899999999999804257-----85577889------99999999999999973797412899986266
Q ss_pred CCCHHH-HHHHHHHH---HHHH---------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC----HHHHHC
Q ss_conf 998433-99999999---9738---------999999999999451896358899999999998322770----115640
Q 003608 277 LQNPEN-RAFAQMFQ---KNYA---------GKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKN----SMYNLL 339 (808)
Q Consensus 277 ~~~~~~-~~f~~~f~---~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~fl~~~~~~~----~~~~~~ 339 (808)
..++++ ..++..|. +.+. ..++....+.+-... .....++...+++||....+.. ..+..+
T Consensus 308 ~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~--~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~ 385 (1023)
T 4hat_C 308 GNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLS--KIEERELFKTTLDYWHNLVADLFYEPLKKHIY 385 (1023)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 3119999999999999999999998679103589999999999861--89928899999999999999998565788889
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 33399999997730566793257543119889997823632---334797889999999999730601199999999997
Q 003608 340 QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDII---EDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGI 416 (808)
Q Consensus 340 ~~~l~~li~~li~~~l~l~~~d~e~we~Dp~efi~~~~d~~---~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~ 416 (808)
+|.+..++..++ ..|++.+++. .+++|-.+++++...+. +.+.+.| ++|..++...+.++++.+++.+.+.
T Consensus 386 ~~~~~~L~~vli-~km~~P~e~~-ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~ 459 (1023)
T 4hat_C 386 EEICSQLRLVII-ENMVRPEEVL-VVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQ 459 (1023)
T ss_dssp HHHHHHHHHHHH-HSCCCCTTCC-EEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHCCCCCCCC-CCCCCCCCHHHHHCCCHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999-8657982026-677888608887144558899999999----9999986068789999999999998
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 312579987886335587999999997787430795468899998450455566-----888650047999997411164
Q 003608 417 FKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-----SPVGHLRAKAAWVAGQYAHIN 491 (808)
Q Consensus 417 l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~-----~~~~~lr~ra~~~l~~~~~~~ 491 (808)
+.. + +.+|+.+||+++++|++++++.+.. ....+...+. .++.... ++.+.+|..+||++|+|++|.
T Consensus 460 l~~----~--~~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~-~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl 531 (1023)
T 4hat_C 460 IDG----S--EWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIK-DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL 531 (1023)
T ss_dssp HSS----T--TCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HCC----C--CCCHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHH-HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 548----8--7888999899999999976898155-7888999999-999754103467625999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC------CCCCCCCCHHHHHHHHHHHHHHHCHHH---HHH
Q ss_conf 47954799999999822899998428869999999997033------431100213999999999851110113---899
Q 003608 492 FSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR------DLNEIRPILPQLLDEFFKLMNEVENED---LVF 562 (808)
Q Consensus 492 ~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~------~~~~~~p~l~~ll~~l~~ll~~~~~~~---l~~ 562 (808)
-.++++++.+++.+++.|.++++.|+..||.|+..+++.|. ......||++++++.+.......+.+. +..
T Consensus 532 ~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lye 611 (1023)
T 4hat_C 532 KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYK 611 (1023)
T ss_dssp HHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 61679899999999998616987899999999999999988876135777786069999999999988479888999999
Q ss_pred HHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999960456--30009989999999999998213689999--983578999999999999995238
Q 003608 563 TLETIVDKFGEE--MAPYALGLCQNLAAAFWRCMNTAEADEDA--DDPGALAAVGCLRAISTILESVSR 627 (808)
Q Consensus 563 ~l~~iv~~~~~~--i~p~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~i~~li~~~~~ 627 (808)
+++.++...+++ ...+...++..+...|.++.+....+++- |.+.......+++|.+.+..+++.
T Consensus 612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~ 680 (1023)
T 4hat_C 612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA 680 (1023)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 999999858877448999999988589999999998722725412878899999999999999998268
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=343.73 Aligned_cols=677 Identities=14% Similarity=0.205 Sum_probs=461.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-----------HCCC
Q ss_conf 899999972399977899999999972059--872999999997237684567999999988774-----------2069
Q 003608 5 SLALILQGALSPNPEERKAAEHSLNQFQYT--PQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIA-----------KNWA 71 (808)
Q Consensus 5 ~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~--p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~-----------~~W~ 71 (808)
++.++|++++|||+++|++||++|+++..+ |+|+..|++++.+.+.+..+|++|++.|||.+. ++|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCHH-----HHHHHHH
Q ss_conf 99988689999567999999999997128958899999999999963099-99724799999871033-----1999999
Q 003608 72 PHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP-EQWPHLLDWVKHNLQDQ-----QVYGALF 145 (808)
Q Consensus 72 ~~~~~~~~~i~~~~k~~ir~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~p-~~Wp~ll~~l~~~l~s~-----~~~~~L~ 145 (808)
.++++.|..||+.+++.+.+++..+ ++.+.+++.|++.++| +.||++++.+.+.++++ ...+++.
T Consensus 82 --------~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~ 152 (876)
T 1qgr_A 82 --------AIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLE 152 (876)
T ss_dssp --------TSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf --------6999999999999999867994788-9999999999984676225688999999987088987999999999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 99999997146786785148999999869999999997404599814999999999996776540487122792217899
Q 003608 146 VLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAW 225 (808)
Q Consensus 146 ~L~~i~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~p~~~~~~~~~~~~ 225 (808)
++..+++.+. + +.....++.+...+.+.+..+++ ...++..+++++..+... ++..+.........
T Consensus 153 ~l~~l~~~~~---~-------~~~~~~~~~ll~~l~~~l~~~~~---~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~~~i 218 (876)
T 1qgr_A 153 AIGYICQDID---P-------EQLQDKSNEILTAIIQGMRKEEP---SNNVKLAATNALLNSLEF-TKANFDKESERHFI 218 (876)
T ss_dssp HHHHHHHHSC---H-------HHHGGGHHHHHHHHHHHHSTTCS---CHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHH
T ss_pred HHHHHHHHCC---H-------HHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf 9999987458---7-------66786799999999986167999---889999999999999999-99988717899999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9999998158999899999946642025167899999999999999489999984339999999997389-999999999
Q 003608 226 MILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAG-KILECHLNL 304 (808)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~-~~~~~~~~~ 304 (808)
++.+...++ ..| .++++.+++++..+...++. .. .++.. .++..++..
T Consensus 219 l~~l~~~~~--------~~~---------~~vr~~a~~~l~~l~~~~~~--~~------------~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 219 MQVVCEATQ--------CPD---------TRVRVAALQNLVKIMSLYYQ--YM------------ETYMGPALFAITIEA 267 (876)
T ss_dssp HHHHHHHTT--------CSS---------HHHHHHHHHHHHHHHHHSGG--GC------------HHHHTTTHHHHHHHH
T ss_pred HHHHHHHCC--------CCC---------HHHHHHHHHHHHHHHHHHHH--HH------------HHHHHHHHHHHHHHH
T ss_conf 999998717--------998---------89999999999999998699--99------------988778999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------------------HHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99451896358899999999998322770-------------------11564033399999997730566793257543
Q 003608 305 LNRIRVGGYLPDRVTNLILQYLSNSISKN-------------------SMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLW 365 (808)
Q Consensus 305 l~~~~~~~~~~~~~~~~~l~fl~~~~~~~-------------------~~~~~~~~~l~~li~~li~~~l~l~~~d~e~w 365 (808)
+. ...+.++..+++||..+++.. ..+...++++..++..++ ..+.-.+
T Consensus 268 ~~------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll-~~l~~~~------ 334 (876)
T 1qgr_A 268 MK------SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT-QTLTKQD------ 334 (876)
T ss_dssp HT------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHH-HHTTCCC------
T ss_pred HC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHCCC------
T ss_conf 63------8734999999999999988787676651001124777542018999998988707999-8753133------
Q ss_pred HCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 11988999782363233479788999999999973060119999999999731257998788633558799999999778
Q 003608 366 DEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCD 445 (808)
Q Consensus 366 e~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~ 445 (808)
+|+ | ++.+++|.+|..++..++...++.+++.+++++.+.+.+ .+|+.|++++.++|.++.
T Consensus 335 -~d~--------~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~--------~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 335 -END--------D--DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN--------PDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp -SSC--------C--TTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSS
T ss_pred -CCC--------C--CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHHC
T ss_conf -444--------5--452179999999999999877586699999999988469--------982899999999999974
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 743079546889999845045556688865004799999741116447---95479999999982289999842886999
Q 003608 446 KLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFS---DQNNFRKALHSVVSGLRDPELPVRVDSVF 522 (808)
Q Consensus 446 ~l~~~~~~~~~~~~~l~~~i~~~l~~~~~~lr~ra~~~l~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~V~~~A~~ 522 (808)
++... .+...+..+ .+.+.+.++++++.+|.+|+|++|++++.... ...++..+++.++..++++ ..||..|+.
T Consensus 396 ~~~~~-~~~~~~~~~-l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~ 472 (876)
T 1qgr_A 396 GPEPS-QLKPLVIQA-MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCW 472 (876)
T ss_dssp SSCHH-HHHHHHHHH-HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHH
T ss_pred CCCHH-HHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_conf 88777-899999999-999999867997899999999999999857201144777999999999987588-889999999
Q ss_pred HHHHHHHHCC------------CCCCCCCCHHHHHHHHHHHHHHHCHH------HHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9999997033------------43110021399999999985111011------38999999999604563000998999
Q 003608 523 ALRSFVEACR------------DLNEIRPILPQLLDEFFKLMNEVENE------DLVFTLETIVDKFGEEMAPYALGLCQ 584 (808)
Q Consensus 523 al~~~~~~~~------------~~~~~~p~l~~ll~~l~~ll~~~~~~------~l~~~l~~iv~~~~~~i~p~~~~l~~ 584 (808)
++..+++... ..+.+.||++.+++.|+.++...+.+ ....+++.++...+++..|+...++.
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~ 552 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTL 552 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999998502012344445554032157699999999999727674204699999999999999774311899999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHH
Q ss_conf 99999999982136899999835---78999999999999995238747899777648999999701271--45899999
Q 003608 585 NLAAAFWRCMNTAEADEDADDPG---ALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDG--QEVFEEVL 659 (808)
Q Consensus 585 ~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~i~~li~~~~~~~~~~~~l~~~~~p~i~~~l~~~~--~~~~e~~l 659 (808)
.+...+......... ...+++. ...+..++.+++.++..++. ..+....+.++|.+...+.... ....+.++
T Consensus 553 ~l~~~l~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 553 VIMERLQQVLQMESH-IQSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQISDVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHTTTTS-CCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHTTHHHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999999988712-488635999999999999999999998285--42057899999999999985368888508999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999955049-999965566499999996446-97556124432111431272122366894079999999999761789
Q 003608 660 EIVSYMTFFS-PTISLEMWSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKN 737 (808)
Q Consensus 660 ~ll~~~~~~~-~~~~p~~~~l~~~l~~~~~~~-~~~~~~~~~~~L~~~i~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~~ 737 (808)
..+..++... ..+.|.+..++|.+.+.+.+. ..+.....+..+...+...++.+. ++...++..+...+.++.
T Consensus 630 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-----PFCDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCC
T ss_conf 999999999876099999999999999875865087999999999999998878546-----459999999999748712
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99875573548999999983758622217799999999850
Q 003608 738 LEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR 778 (808)
Q Consensus 738 ~~~~~~~~a~~ll~~ii~~~~~~~~~~l~~il~~~l~~l~~ 778 (808)
.+..-+..+...++.++..+|+.+.++++.+++.+.+.+..
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~ 745 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQA 745 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_conf 33876399999999999970352799999999999999855
No 9
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=329.20 Aligned_cols=586 Identities=11% Similarity=0.164 Sum_probs=361.3
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99388999999723999778999999999720598729999999972376845679999999887742069999886899
Q 003608 1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQK 80 (808)
Q Consensus 1 Md~~~l~~~L~~~ls~d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~~~~vR~~Aai~lKn~i~~~W~~~~~~~~~~ 80 (808)
||++.+.+++.+.++||++.|++|+++|++++++|++|..+..++.+ +.+..+|++|++.|||+|+++|..
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~-------- 95 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKI-------- 95 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGG--------
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 99999999999982999999999999999987290589999999468-998999999999999999764662--------
Q ss_pred CCHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH--HHHHHHHHHHH
Q ss_conf 9956799999999999712---------895889999999999996309999724799999871033--19999999999
Q 003608 81 ISQVDKDMVRDHILVFVAQ---------VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ--QVYGALFVLRI 149 (808)
Q Consensus 81 i~~~~k~~ir~~ll~~l~~---------~~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~--~~~~~L~~L~~ 149 (808)
+++++|..||+.+++.+.. .++.++++++.+++.|++.+||+.||++++++++.++++ ....+|.+|..
T Consensus 96 L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL~~ 175 (1073)
T 3gjx_A 96 LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKL 175 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999999999987268532333468999999999999998683316089999999837998899999999999
Q ss_pred HHHHC-CCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCC---------
Q ss_conf 99971-4678----678514899999986999999999740459981499999999999677654-04871---------
Q 003608 150 LSRKY-EFKS----DEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIY-LEIPK--------- 214 (808)
Q Consensus 150 i~~~~-~~~~----~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~-~~~p~--------- 214 (808)
+.++. .+++ ...+..+.+.+...+|.+++++...++... + ..+...++++++++.. .++..
T Consensus 176 L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-~---~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 176 LSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-N---APLVHATLETLLRFLNWIPLGYIFETKLIST 251 (1073)
T ss_dssp HHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C---HHHHHHHHHHHHHHHHHCCHHHHCCCHHHHH
T ss_conf 99999851434230889999999999999999999998755568-8---7999999999999998658987605428999
Q ss_pred ----CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHHHHH-HHHHHH----------HHHHCCCCCCC
Q ss_conf ----227922178999999998158999899999946642025167899999-999999----------99948999998
Q 003608 215 ----QLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTV-HILNRL----------YTRFGDLKLQN 279 (808)
Q Consensus 215 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~kk~~~-~~l~~l----------~~~~~~~~~~~ 279 (808)
.+.+++....-+..+..+++...+ +-++ ...+ .+ .+++.+ ...|......+
T Consensus 252 L~~~~L~~~~~r~aA~dcL~eIv~k~~~------~~~~-------~~~~-lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d 317 (1073)
T 3gjx_A 252 LIYKFLNVPMFRNVSLKCLTEIAGVSVS------QYEE-------QFET-LFTLTMMQLKQMLPLNTNIRLAYSNGKDDE 317 (1073)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSCSG------GGHH-------HHHH-HHHHHHHHHHHHSCTTSCHHHHHHTCCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCC------CHHH-------HHHH-HHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
T ss_conf 9998669867899999999999964152------0689-------9999-999999999886588202788874465514
Q ss_pred HHH-HHHHHHH---HHHHHHHH---------HHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------------
Q ss_conf 433-9999999---99738999---------999999-99945189635889999999999832277-------------
Q 003608 280 PEN-RAFAQMF---QKNYAGKI---------LECHLN-LLNRIRVGGYLPDRVTNLILQYLSNSISK------------- 332 (808)
Q Consensus 280 ~~~-~~f~~~f---~~~~~~~~---------~~~~~~-~l~~~~~~~~~~~~~~~~~l~fl~~~~~~------------- 332 (808)
+++ ..++..| .+.+..-+ +...++ ++..+. ....++...+++||......
T Consensus 318 ~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~---~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~ 394 (1073)
T 3gjx_A 318 QNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE---VEETEIFKICLEYWNHLAAELYRESPFSTSASP 394 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999999999983585424799999999999838---991999999999999999999861423334451
Q ss_pred ----------CHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf ----------0115640333999999977305667932575431198899978236323347978899999999997306
Q 003608 333 ----------NSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRG 402 (808)
Q Consensus 333 ----------~~~~~~~~~~l~~li~~li~~~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~ 402 (808)
+..+..++|.+..+...+ +..|...+|.. .-++|.+|++++...++ |..+.+.+..+.+..++.-.+
T Consensus 395 ~~~~~~~~~~~~~~~~y~~i~~~L~~vl-I~~m~~P~ev~-i~e~e~ge~~re~~~d~-~~~~ly~~mrd~L~~lt~l~~ 471 (1073)
T 3gjx_A 395 LLSGSQHFDIPPRRQLYLTVLSKVRLLM-VSRMAKPEEVL-VVENDQGEVVREFMKDT-DSINLYKNMRETLVYLTHLDY 471 (1073)
T ss_dssp CTTSSCCSCSCHHHHTTHHHHHHHHHHH-HHTCCCSCCEE-EEECSSSCEEEEECSSC-HHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCC-CCCCCCCHHHHHHHHHC-CHHHHHHHHHHHHHHHHCCCH
T ss_conf 0022210010338999999999999999-98259994235-46765126899988613-218999999999998704888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC-----CCCHH
Q ss_conf 0119999999999731257998788633558799999999778743079546889999845045556688-----86500
Q 003608 403 KENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSP-----VGHLR 477 (808)
Q Consensus 403 ~~~~~~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~~~~~~~~~~~~l~~~i~~~l~~~-----~~~lr 477 (808)
..+...+++.+.+.+.. +..+|...||+++++|+++..+.+... +..+..++ +.+++....+ -+.++
T Consensus 472 ~~~~~i~~~~l~~~~~~------~~~sW~~lea~~~aigaIag~~~~~~E-~~~Lp~vi-~~Ll~L~e~~~~kd~k~~va 543 (1073)
T 3gjx_A 472 VDTEIIMTKKLQNQVNG------TEWSWKNLNTLCWAIGSISGAMHEEDE-KRFLVTVI-KDLLGLCEQKRGKDNKAIIA 543 (1073)
T ss_dssp HHHHHHHHHHHHHHHTS------CCCCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHH-HHHHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHH-HHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999999998467------888878883999999998772786210-02299999-99863414444341269999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC------CCCCCCCHHHHHHHHHHH
Q ss_conf 47999997411164479547999999998228999984288699999999970334------311002139999999998
Q 003608 478 AKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRD------LNEIRPILPQLLDEFFKL 551 (808)
Q Consensus 478 ~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~V~~~A~~al~~~~~~~~~------~~~~~p~l~~ll~~l~~l 551 (808)
...||++|+|++|.-.++++++.++..++..+.+++..|+..||.|+..++.+|.. .....||++++++.+...
T Consensus 544 s~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~ 623 (1073)
T 3gjx_A 544 SNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTI 623 (1073)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999995007999867799999999999998449878999999999999999989875235554535999999999999
Q ss_pred HHHHCHHH---HHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 51110113---8999999999604563--000998999999999999821368999--9983578999999999999995
Q 003608 552 MNEVENED---LVFTLETIVDKFGEEM--APYALGLCQNLAAAFWRCMNTAEADED--ADDPGALAAVGCLRAISTILES 624 (808)
Q Consensus 552 l~~~~~~~---l~~~l~~iv~~~~~~i--~p~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~i~~li~~ 624 (808)
....+.+. +..+++.++...+++. ..+...++..+...|.++.++...+++ .|.+.......+++|.+.+..+
T Consensus 624 ~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~ 703 (1073)
T 3gjx_A 624 ICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKA 703 (1073)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 97469999999999999999859972029999999988999999999998621714205838999999999653998845
Q ss_pred HCC
Q ss_conf 238
Q 003608 625 VSR 627 (808)
Q Consensus 625 ~~~ 627 (808)
+|.
T Consensus 704 ~g~ 706 (1073)
T 3gjx_A 704 VGH 706 (1073)
T ss_dssp HCG
T ss_pred CCH
T ss_conf 652
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=317.07 Aligned_cols=654 Identities=13% Similarity=0.145 Sum_probs=397.3
Q ss_pred CCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9938899999972399--9778999999999720598729999999972376-845679999999887742069999886
Q 003608 1 MDLPSLALILQGALSP--NPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNC-DLSVRQVASIHFKNFIAKNWAPHEPNE 77 (808)
Q Consensus 1 Md~~~l~~~L~~~ls~--d~~~r~~AE~~L~~~~~~p~f~~~L~~i~~~~~~-~~~vR~~Aai~lKn~i~~~W~~~~~~~ 77 (808)
||.+++.++++.+++| |++.|++|+++|++++++|++|..+..++.+.+. +..+|++|+.+||++|+ .
T Consensus 3 m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~----- 73 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----E----- 73 (980)
T ss_dssp CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----H-----
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH----H-----
T ss_conf 9999999999998489999999999999999987394599999999837999989999999999999987----5-----
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH-H---HHHHH
Q ss_conf 8999956----799999999999712-----895889999999999996309999724799999871033-1---99999
Q 003608 78 QQKISQV----DKDMVRDHILVFVAQ-----VPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ-Q---VYGAL 144 (808)
Q Consensus 78 ~~~i~~~----~k~~ir~~ll~~l~~-----~~~~i~~~l~~~i~~Ia~~d~p~~Wp~ll~~l~~~l~s~-~---~~~~L 144 (808)
++++ ++..||+.+++.+.. .++.||++++.+++.|+..+||..||++++++++.++++ . ....|
T Consensus 74 ---l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~L 150 (980)
T 3ibv_A 74 ---WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYL 150 (980)
T ss_dssp ---CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf ---88201088999999999999997057778679999999999999998685447539999999856897268999999
Q ss_pred HHHHHHHHHCCCC---CCC---CC-CHHHHHHH-----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999971467---867---85-14899999-----986999999999740459981499999999999677654048
Q 003608 145 FVLRILSRKYEFK---SDE---ER-TPVYRIVE-----ETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEI 212 (808)
Q Consensus 145 ~~L~~i~~~~~~~---~~~---~~-~~~~~~~~-----~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~ 212 (808)
++|..+.++.... +.. .| ..+.+.+. .+++.+..++.+..... ...+...+++|+.+++.- +
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-----~~~l~~~~L~~l~s~i~w-i 224 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-----NYGTVGLCLQVYAQWVSW-I 224 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTTT-S
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHH-C
T ss_conf 9999858999723236678877665999999986628899999999999874128-----899999999999999865-2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHCCCCC----C------CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC--CCC
Q ss_conf 712-27922178999999998158999----8------9999994664202516789999999999999948999--998
Q 003608 213 PKQ-LLDPNVFNAWMILFLNVLERPVP----S------EGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLK--LQN 279 (808)
Q Consensus 213 p~~-~~~~~~~~~~~~~~~~~l~~~~~----~------~~~~~d~~~~~~~~~~~~kk~~~~~l~~l~~~~~~~~--~~~ 279 (808)
|.. ..+ ..+++.+.+.+..+-- . -....+++++ ...+..+ .+...+.... ..+
T Consensus 225 ~~~~i~~----~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k---------~~li~~l-~L~~~~~~l~~~~~D 290 (980)
T 3ibv_A 225 NINLIVN----EPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEK---------LNLLNIL-NLNLFFSKSQEQSTD 290 (980)
T ss_dssp CHHHHHC----HHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHH---------HHHHHHH-HHHHHHCC-----CC
T ss_pred CHHHHHC----CHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH---------HHHHHHH-HHHHHHHHHHCCCCC
T ss_conf 7786503----0189999998288677999999999999737895668---------9999997-579999987445556
Q ss_pred HHH-HHHHHHHHHH--------------------HHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHCCCCH---
Q ss_conf 433-9999999997--------------------3899999999999-94518963588999999999983227701---
Q 003608 280 PEN-RAFAQMFQKN--------------------YAGKILECHLNLL-NRIRVGGYLPDRVTNLILQYLSNSISKNS--- 334 (808)
Q Consensus 280 ~~~-~~f~~~f~~~--------------------~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~fl~~~~~~~~--- 334 (808)
.++ ..+++.|..- .....+..+++.+ ..... ..+++...+++||...+...+
T Consensus 291 ~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~---~~deVs~~t~~Fw~~~l~~~~~~~ 367 (980)
T 3ibv_A 291 PNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD---DYDETSTAVFPFLSDLLVSLRKES 367 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC---SSHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999999998735865555255666899999999999999679---806399999999999999987244
Q ss_pred ----HHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH---
Q ss_conf ----1564033399999997730566793257543119889997823632334797889999999999730601199---
Q 003608 335 ----MYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ--- 407 (808)
Q Consensus 335 ----~~~~~~~~l~~li~~li~~~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~r~~a~~ll~~l~~~~~~~~~~--- 407 (808)
.....++.+..++..++ ..+++.+++ .|++|.+ .|+.+++...|.....+++.+....++.++.
T Consensus 368 ~~~~~~~~~~~~l~~Ll~~li-~k~~yp~d~--~~~~~~d------~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~ 438 (980)
T 3ibv_A 368 SSKELSASLKEFLKSLLEAII-KKMKYDESQ--EWDDDPD------SEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMY 438 (980)
T ss_dssp TSCCCCHHHHHHHHHHHHHHH-HTTSCCTTC--CCCCCSS------SSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHCCCCCCC--CCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 223433789999999999999-872289865--6666655------5479999999999999999999648498888899
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHCCCCCC-CCCCCCHHH
Q ss_conf -9999999973125799878863355879999999977874307-------9546889999845045556-688865004
Q 003608 408 -KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQT-------EPYKSELERMLVQHVFPEF-SSPVGHLRA 478 (808)
Q Consensus 408 -~il~~i~~~l~~~~~~~~~~~~~~~~ea~l~~l~~~~~~l~~~-------~~~~~~~~~~l~~~i~~~l-~~~~~~lr~ 478 (808)
.+.+.+.+.+.+ . .+.+|+.+||++++++.+++++... .+....+.+++...+.... +++||.+|.
T Consensus 439 ~~i~~~l~~~l~~----~-~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~ 513 (980)
T 3ibv_A 439 SAITSSLSTAATL----S-PENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQL 513 (980)
T ss_dssp HHHHHHHHHHTTS----C-HHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHH
T ss_pred HHHHHHHHHHHCC----C-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9999999987155----5-8998799999999999987653431236675521068999999999847888899789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-H
Q ss_conf 79999974111644795479999999982--28999984288699999999970334311002139999999998511-1
Q 003608 479 KAAWVAGQYAHINFSDQNNFRKALHSVVS--GLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNE-V 555 (808)
Q Consensus 479 ra~~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~V~~~A~~al~~~~~~~~~~~~~~p~l~~ll~~l~~ll~~-~ 555 (808)
.+||++|+|++|.-.+++++..+++.++. .+.+++..||..||.++.+|++.+ +..+.||++++++.+-.++.. .
T Consensus 514 ~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~--~~~L~~~~~~il~~l~~lL~~~~ 591 (980)
T 3ibv_A 514 LYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI--KKQVVNYTESSLAMLGDLLNISV 591 (980)
T ss_dssp HHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT--TTTCSSSHHHHHHHTTGGGCCCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999998519354999999982600266997659999999999999986--68744589999999998616867
Q ss_pred ---C-----------------HH---HHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf ---0-----------------11---38999999999604---5630009989999999999998213689999983578
Q 003608 556 ---E-----------------NE---DLVFTLETIVDKFG---EEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGAL 609 (808)
Q Consensus 556 ---~-----------------~~---~l~~~l~~iv~~~~---~~i~p~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 609 (808)
+ .+ .+.++++.++...+ ++...+...+++.+...+.+..+....++ ++..
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~---~~~~- 667 (980)
T 3ibv_A 592 SPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL---ENII- 667 (980)
T ss_dssp CCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-----CHHH-
T ss_pred CCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CHHH-
T ss_conf 888753222210454203677147889999999999278998789999999999999999999886413586---3888-
Q ss_pred HHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999995238747---899777648999999701--271458999999999955049999965566499999
Q 003608 610 AAVGCLRAISTILESVSRLPH---LFVQIEPTLLPIMRRMLT--TDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMM 684 (808)
Q Consensus 610 ~~~~~l~~i~~li~~~~~~~~---~~~~l~~~~~p~i~~~l~--~~~~~~~e~~l~ll~~~~~~~~~~~p~~~~l~~~l~ 684 (808)
..+..+-+++++.+.....+. .+......+++.+..+++ +......+.+...+..++. .+.+.+....|.+.
T Consensus 668 ~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~---~lg~~~~p~lp~~i 744 (980)
T 3ibv_A 668 SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIIN---VVGPDMLPKVPQLI 744 (980)
T ss_dssp HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTT---TTHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHH
T ss_conf 999999999997316786468888189999999999999988267867899999999999999---75576798789999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 996446-9755612443211143127212
Q 003608 685 EALADW-AIDFFPNILVPLDNYISRGTAH 712 (808)
Q Consensus 685 ~~~~~~-~~~~~~~~~~~L~~~i~~~~~~ 712 (808)
..+.+. ...-+...+.++...+..-++.
T Consensus 745 ~~ll~~~~~~e~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 745 SILLNSIDMNELVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp HHHHHHCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99983698799999999999999999888
Done!