BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003611
(807 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 466 bits (1199), Expect = e-131, Method: Compositional matrix adjust.
Identities = 266/749 (35%), Positives = 398/749 (53%), Gaps = 58/749 (7%)
Query: 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN 84
++TSALPY N H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT +A+++
Sbjct: 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEG 64
Query: 85 CSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQ 144
SP+EI D++H K ++ ISFD FGRT P + Q F K +N L++ +Q
Sbjct: 65 RSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQ 124
Query: 145 PYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC+ K FL DR V GTCP+ C E +GDQCE CG+ L L +P+C +C
Sbjct: 125 AYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISF 182
Query: 205 RDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVP 264
RD+ H ++ + +L+ +I W N +W++EGL+ R ITRDL WG+P
Sbjct: 183 RDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGIP 238
Query: 265 VPL--ERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPE-NVELYQFMGKD 315
VPL E K KV YVWF+APIGY+SIT + NEW+++W N + + F+GKD
Sbjct: 239 VPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKD 298
Query: 316 NVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDA 367
N+PFH + +P+ L+ G+ W L I EYL E KFS S+ ++ ++
Sbjct: 299 NIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEF 358
Query: 368 KDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427
D P + RYYL T PE D+ F+++D + + N EL+NNLGNF++R L+F+ +
Sbjct: 359 LDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFV----NR 413
Query: 428 GYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487
+ +VP+ E +L + E++ K ++ E + + K LK MS++S GN Y
Sbjct: 414 YFDGVVPER--GELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFD 471
Query: 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCD 547
Q WK KED+ + S+ +V L LLEPF+P S ++ LNL
Sbjct: 472 HKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL---------- 521
Query: 548 EKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGS---QADRIIRXX 602
D +R WE +PAGHK+ P LFK++ DD++ +F + + RI+
Sbjct: 522 -----DEVKR-WEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARILLDK 575
Query: 603 XXXXXXXXXXXXXXISDXXXXXXXXXXXXXXXXXXXXXEPEI----SIARLDIRVGKITK 658
D + A+LD+RVGKI +
Sbjct: 576 YYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGKEMYVKFDDFAKLDLRVGKIIE 635
Query: 659 VQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSH 718
V+ HP+AD LYV ++D+G+ + RT+V+GL K+ EE+ R V V+ NL+P +RGI S
Sbjct: 636 VKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ 694
Query: 719 AMVLCASTSDNTKVELVEPPKSAKIGERV 747
M+L A D +V L+ P K K+G +V
Sbjct: 695 GMLLAA--DDGERVALLMPDKEVKLGAKV 721
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/529 (28%), Positives = 247/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 6 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 64
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 65 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 124
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 125 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 182
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 183 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 238
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 239 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 296
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 297 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 354
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 355 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 414
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 415 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 461
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 462 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 510
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/529 (28%), Positives = 247/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 238 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 296 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 354 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 413
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 414 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 460
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 461 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 509
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 150/529 (28%), Positives = 247/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 238 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 296 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 354 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 413
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 414 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 460
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 461 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 509
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/526 (27%), Positives = 245/526 (46%), Gaps = 30/526 (5%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 64 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 123
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 124 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 181
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 182 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 237
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIGY+ ++ ++++WK ELY F+GK
Sbjct: 238 FGFEIP--NAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 295
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V FH++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 296 DIVYFHSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 353
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K + G +
Sbjct: 354 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK---RFDGVLAS 410
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
+ ++ AE +G EA E + + ++ M+++ N Y+ E W +
Sbjct: 411 ELADPALYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAPWVV 463
Query: 495 YKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
K+ + S+G L +L L+P +P + LN +
Sbjct: 464 AKQAGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 509
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 147/529 (27%), Positives = 244/529 (46%), Gaps = 36/529 (6%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T A PY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 18 KKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 76
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 77 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 136
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 137 ISQLYDPEKGMFLPDRFVKGTCP--KCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGAT 194
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + +G+ + W + GL+ I+RD +
Sbjct: 195 PVMRDSEHFFFDLPSFSEMLQAWTR----SGALQEQVANKMQEWFESGLQQWDISRDAPY 250
Query: 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
G +P K FYVW DAPIG + ++ ++++WK ELY F+GK
Sbjct: 251 FGFEIP--NAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 308
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V F ++ +P+ L G N+ + V Y+ K SKS+G + + +
Sbjct: 309 DIVYFLSLFWPAML--EGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDAD 366
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
+ YY + D D + N +++N + N +R FI K S +
Sbjct: 367 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELA 426
Query: 435 DANGAESHQLTKTL---AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491
D QL KT AE +G EA E + + ++ M+++ N Y+ E
Sbjct: 427 DP------QLYKTFTDAAEVIG-------EAWESREFGKAVREIMALADLANRYVDEQAP 473
Query: 492 WKLYKEDQPSCSIVMRTSVG--LVHLLACLLEPFMPSFSVEVNKQLNLQ 538
W + K++ + S+G L +L L+P +P + LN +
Sbjct: 474 WVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 522
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 644 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCV 703
I ++RLD+R+G I +KHPDAD+LYVEE+DVGE+ PRTVVSGLV H+PLE+MQ RMV +
Sbjct: 4 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 63
Query: 704 LCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPK 763
LCNLKP MRG+ S AMV+CAS+ + K+E++ PP + G+R+ F F GEPD LNPK
Sbjct: 64 LCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPK 121
Query: 764 KKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 807
KK+WE +Q DLHTN E VA YK +PF G+C ++ + I+
Sbjct: 122 KKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 166
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 644 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCV 703
I ++RLD+R+G I +KHPDAD+LYVEE+DVGE+ PRTVVSGLV H+PLE+MQ RMV +
Sbjct: 4 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 63
Query: 704 LCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPK 763
LCNLKP MRG+ S AMV+CAS+ + K+E++ PP + G+R+ F F GEPD LNPK
Sbjct: 64 LCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPK 121
Query: 764 KKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 807
KK+WE +Q DLHTN E VA YK +PF G+C ++ + I+
Sbjct: 122 KKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 166
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/165 (55%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 644 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCV 703
I ++RLD+R+G I +KHPDAD+LYVEE+DVGE+ PRTVVSGLV H+PLE+MQ RMV +
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 704 LCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPK 763
LCNLKP MRG+ S AMV+CAS+ + K+E++ PP + G+R+ F F GEPD LNPK
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPK 118
Query: 764 KKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 807
KK+WE +Q DLHTN E VA YK +PF G+C ++ + I+
Sbjct: 119 KKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 163
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 120/169 (71%), Gaps = 3/169 (1%)
Query: 641 EPEISI-ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
EPE I +RLDIRVGKI V+KHPDAD+LYVE+IDVGE +PRTVVSGLV+ +P EE+Q+R
Sbjct: 1 EPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDR 60
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPD 757
+V VLCNLKP MRG++S M+LCAS N +VE ++PP + GE V G+E G+PD
Sbjct: 61 LVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPD 120
Query: 758 DVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 806
+ L PKKKV+E +Q D + E +A +K F T G + S++ G+I
Sbjct: 121 EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 169
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 234/513 (45%), Gaps = 68/513 (13%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ +T+ + YVN+VPHLG+ ++ +AD AR+ RLR Y+ ++ GTDE+G + KA
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTI-AADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE 63
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
E SPKE+ D+ K ++++ I + F RT+ P + Q +F++ +
Sbjct: 64 ELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGE 123
Query: 142 MQQPYCDTCKRFL--ADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ YC C+ F A+ + TCP +CE +K+P
Sbjct: 124 YEGWYCVGCEEFKSEAELAEDHTCPI--------HQKKCEY---------IKEPS----- 161
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITR 257
F L ++KL E N + + +N I + ++K+GLK +TR
Sbjct: 162 ----------YFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIIS---FVKQGLKDLSVTR 208
Query: 258 ---DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGK 314
+KWG+PVP + E YVWFDA Y+S ++ E +W P ++ L +GK
Sbjct: 209 PRSRVKWGIPVPFD--PEHTIYVWFDALFNYISALE---DKVEIYW--PADLHL---VGK 258
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D + FHTV +P+ L+ G + L K + + E K SK+ G V +
Sbjct: 259 DILRFHTVYWPAFLMSLG--YELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLD 316
Query: 375 EVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVP 434
EV RY+LL P D F+ + + N EL N +GN +RV++ K G
Sbjct: 317 EV-RYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGG------- 368
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494
+ +GA + K E + Y E Y MEKV + ++ + +S N Y+ E Q W L
Sbjct: 369 EVSGARDEEYAKIAQESIKNY-ENY---MEKVNFYKAIEEILKFTSYLNKYVDEKQPWAL 424
Query: 495 YKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPS 526
KE + V+ V + +L LL P P+
Sbjct: 425 NKERKKEELQKVLYALVDGLFVLTHLLYPITPN 457
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/542 (25%), Positives = 221/542 (40%), Gaps = 83/542 (15%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145
PK D+ K + I++D+F RT+ + + Q + KK+ + + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 146 YCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC +C+RF ++ LVEG C + +
Sbjct: 126 YCVSCERFYTEKELVEGL--------------------------------CPIHGRPVER 153
Query: 205 RDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG 262
R + F + R L+EYI N + +N + A A L + + WG
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWG 213
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVSIT-----SCYTNEWEQWWKNPENVELYQFMGKDNV 317
+P+P + + V YVWFDA + YVS Y W W +GKD +
Sbjct: 214 IPLPWD--ENHVTYVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGKDIL 262
Query: 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGV--------FGNDAK 368
H V +P+ L G + + ++V +L G K SK+ G V +G DA
Sbjct: 263 KPHAVFWPTMLKAAG--IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA- 319
Query: 369 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
RYYLL P DT + L+ + +L ++LGN + R + + +
Sbjct: 320 --------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR---FA 368
Query: 429 YGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488
G I G E LAE G + + ++K L+ AM+ N Y+ E
Sbjct: 369 EGRIPEPVAGEE-------LAEGTG-LAGRLRPLVRELKFHVALEEAMAYVKALNRYINE 420
Query: 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
+ W+L+K++ V+ V + + + LL P MP E+ + L L+ E + +
Sbjct: 421 KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 549 KG 550
G
Sbjct: 481 WG 482
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 151/573 (26%), Positives = 238/573 (41%), Gaps = 69/573 (12%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G IT+A+ Y N VPH+G+ ++ D ARF RL GY+ Y+ GTD +G
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAY-EYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A ++ E+ + + + + + +ISFD F RTS EA +AI+K++ D +
Sbjct: 69 AAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYL 128
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC---ENCGKLLNATDLKDPKCK 196
+ + Y +RF + E T +G + G E + D
Sbjct: 129 DAYKGWYSIRDERFFTEN--ETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLA 186
Query: 197 VCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256
+ P+ F+ A RN++ +++ GLK I+
Sbjct: 187 LYEEHPE-------FIGPDARRNEIVSFVSG---------------------GLKDLSIS 218
Query: 257 RD-LKWGVPVPLERFKEKVFYVWFDAPIGY---VSITSCYTNEWEQWWKNPENVELYQFM 312
R WGVPVP + V YVW DA Y V + + ++W P ++ + +
Sbjct: 219 RTTFDWGVPVP--DHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW--PADLHM---I 271
Query: 313 GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNI 372
GKD + FHTV +P+ L+ G L K I +L K SKS G V + DT
Sbjct: 272 GKDIIRFHTVYWPAFLMSAG--LPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDT-F 328
Query: 373 PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI 432
++ RY+LL P D + + + N +L N LGN R LS +AK G+
Sbjct: 329 GLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAK----NLGAA 384
Query: 433 VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFW 492
VPD E L +E+ E + + L+ S+ N Y + W
Sbjct: 385 VPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPW 442
Query: 493 KLYK----EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
L K EDQ V+ T++ +V + + LL+P MP + ++ L QP DE
Sbjct: 443 VLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLG-QP------TDE 495
Query: 549 KGDVDRARRPWEIIPAGHKIGSPNPLFKELKDD 581
+ A R I G + +P+ +F ++D
Sbjct: 496 RDFSAIANR----IKPGTSLPAPSGIFPRYQND 524
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 136/542 (25%), Positives = 221/542 (40%), Gaps = 83/542 (15%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145
PK D+ K + I++D+F RT+ + + Q + KK+ + + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 146 YCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC +C+RF ++ LVEG C + +
Sbjct: 126 YCVSCERFYTEKELVEGL--------------------------------CPIHGRPVER 153
Query: 205 RDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG 262
R + F + R L+EYI N + +N + A A L + + WG
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWG 213
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVSIT-----SCYTNEWEQWWKNPENVELYQFMGKDNV 317
+P+P + + V +VWFDA + YVS Y W W +GKD +
Sbjct: 214 IPLPWD--ENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGKDIL 262
Query: 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGV--------FGNDAK 368
H V +P+ L G + + ++V +L G K SK+ G V +G DA
Sbjct: 263 KPHAVFWPTMLKAAG--IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA- 319
Query: 369 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
RYYLL P DT + L+ + +L ++LGN + R + + +
Sbjct: 320 --------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR---FA 368
Query: 429 YGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488
G I G E LAE G + + ++K L+ AM+ N Y+ E
Sbjct: 369 EGRIPEPVAGEE-------LAEGTG-LAGRLRPLVRELKFHVALEEAMAYVKALNRYINE 420
Query: 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
+ W+L+K++ V+ V + + + LL P MP E+ + L L+ E + +
Sbjct: 421 KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 549 KG 550
G
Sbjct: 481 WG 482
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 136/542 (25%), Positives = 220/542 (40%), Gaps = 83/542 (15%)
Query: 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85
+T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 7 VTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGE 65
Query: 86 SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145
PK D+ K + I++D+F RT+ + + Q + KK+ + + +
Sbjct: 66 DPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125
Query: 146 YCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204
YC +C+RF ++ LVEG C + +
Sbjct: 126 YCVSCERFYTEKELVEGL--------------------------------CPIHGRPVER 153
Query: 205 RDTNHLFLDLPALRNKLEEYI--NNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG 262
R + F + R L+EYI N + +N + A A L + + WG
Sbjct: 154 RKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWG 213
Query: 263 VPVPLERFKEKVFYVWFDAPIGYVSIT-----SCYTNEWEQWWKNPENVELYQFMGKDNV 317
+P+P + + V VWFDA + YVS Y W W +GKD +
Sbjct: 214 IPLPWD--ENHVTAVWFDALLNYVSALDYPEGEAYRTFWPHAW---------HLIGKDIL 262
Query: 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGV--------FGNDAK 368
H V +P+ L G + + ++V +L G K SK+ G V +G DA
Sbjct: 263 KPHAVFWPTMLKAAG--IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA- 319
Query: 369 DTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQG 428
RYYLL P DT + L+ + +L ++LGN + R + + +
Sbjct: 320 --------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFR---FA 368
Query: 429 YGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488
G I G E LAE G + + ++K L+ AM+ N Y+ E
Sbjct: 369 EGRIPEPVAGEE-------LAEGTG-LAGRLRPLVRELKFHVALEEAMAYVKALNRYINE 420
Query: 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDE 548
+ W+L+K++ V+ V + + + LL P MP E+ + L L+ E + +
Sbjct: 421 KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 549 KG 550
G
Sbjct: 481 WG 482
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 128/509 (25%), Positives = 223/509 (43%), Gaps = 50/509 (9%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ IT+A+ Y N PH+G+ +++ D ARF RL G + ++ GTDE+G A
Sbjct: 24 REKYYITTAIAYPNGKPHIGHAY-ELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSA 82
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
++ +P+++ D+ + + + + S D++ RTS + +A QAI++ ++ N + +
Sbjct: 83 RKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKG 142
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
Y + + + E +G Y +G E
Sbjct: 143 GYAGWYSVRDEAYYGEEETEVRA--DGVRY-GPQGTPVEWV------------------- 180
Query: 201 APQIRDTNHLFLDLPALRNKLEE-YINNMS-VAGSWSQNAIQATHAWLKEGLKVRCITRD 258
+ F L A ++KL + Y NN + + +N I + ++K GLK I+R
Sbjct: 181 -----EEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVS---FVKSGLKDLSISRT 232
Query: 259 -LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV 317
WG+PVP + ++ V YVW DA Y++ E+W P N + +GKD
Sbjct: 233 TFDWGIPVPGD--EKHVMYVWVDALTNYITALGYPDTTDERWAYWPANAHI---IGKDIS 287
Query: 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVW 377
FH V +P+ L+ L K + +L K SKS G V ++
Sbjct: 288 RFHAVYWPAFLMSA--QLPLPKRVFAHGFLFNRGEKMSKSVG-NVIDPFELVERYGLDQL 344
Query: 378 RYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP-PGQGYGSIVPDA 436
RY+L+ P D ++ + ++N +L N+LGN R LS IAK G+ VP
Sbjct: 345 RYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGK-----VPQP 399
Query: 437 NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYK 496
GA S + K + ++ +E +AM+ L L ++ +E N Y + W L K
Sbjct: 400 -GAFS-EADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRK 457
Query: 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMP 525
D V+ + ++ + +++PF+P
Sbjct: 458 TDPARMGTVLYVTAEVLRRVGIMVQPFIP 486
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/536 (23%), Positives = 208/536 (38%), Gaps = 60/536 (11%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
+TS + YVN PH+G++ S L DV R+ R++G + GTDE+G A +
Sbjct: 11 FFVTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK 69
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
SP + K ++ D S D F RT+ Q + ++ KL + +
Sbjct: 70 QVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYE 129
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
Y + + FL + + + D CKV +
Sbjct: 130 GWYSISDESFLTPQ-------------------------NITDGVDKDGNPCKVSLESGH 164
Query: 204 I----RDTNHLFLDLPALRNKLEEYIN---NMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256
+ + N++F L A R +L E+ + V + I+A L + R
Sbjct: 165 VVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARA 223
Query: 257 RDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----------WEQWWKNPENV 306
W +PVP + YVW DA Y++ + +E + + + P +V
Sbjct: 224 TLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADV 281
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+ +GKD + FH + +P+ LL G L K I + + K SKS G VF
Sbjct: 282 HV---IGKDILKFHAIYWPAFLLSAG--LPLPKKIVAHGWWTKDRKKISKSLG-NVFDPV 335
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
K + +Y+LL D ++ ++ A+ N EL + LGN + R S G
Sbjct: 336 EKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNG 395
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
+ P A E L + + + G YL +++ + + NAY+
Sbjct: 396 EWPS---PAAYTEEDESLIQLIKDLPGTADHYYLIP----DIQKAIIAVFDVLRAINAYV 448
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542
+ WKL K D V+ ++ V + LL P +P SV + L + PE H
Sbjct: 449 TDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV-PEVH 503
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 126/536 (23%), Positives = 208/536 (38%), Gaps = 60/536 (11%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
+TS + YVN PH+G++ S L DV R+ R++G + GTDE+G A +
Sbjct: 11 FFVTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK 69
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
SP + K ++ D S D F RT+ Q + ++ KL + +
Sbjct: 70 QVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYE 129
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
Y + + FL + + + D CKV +
Sbjct: 130 GWYSISDESFLTPQ-------------------------NITDGVDKDGNPCKVSLESGH 164
Query: 204 I----RDTNHLFLDLPALRNKLEEYIN---NMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256
+ + N++F L A R +L E+ + V + I+A L + R
Sbjct: 165 VVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARA 223
Query: 257 RDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----------WEQWWKNPENV 306
W +PVP + YVW DA Y++ + +E + + + P +V
Sbjct: 224 TLHNWAIPVPGN--PDHCVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADV 281
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+ +GKD + FH + +P+ LL G L K I + + K SKS G VF
Sbjct: 282 HV---IGKDILKFHAIYWPAFLLSAG--LPLPKKIVAHGWWTKDRKKISKSLG-NVFDPV 335
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
K + +Y+LL D ++ ++ A+ N EL + LGN + R S G
Sbjct: 336 EKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNG 395
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
+ P A E L + + + G YL +++ + + NAY+
Sbjct: 396 EWPS---PAAYTEEDESLIQLIKDLPGTADHYYLIP----DIQKAIIAVFDVLRAINAYV 448
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542
+ WKL K D V+ ++ V + LL P +P SV + L + PE H
Sbjct: 449 TDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV-PEVH 503
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 126/536 (23%), Positives = 208/536 (38%), Gaps = 60/536 (11%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
+TS + YVN PH+G++ S L DV R+ R++G + GTDE+G A +
Sbjct: 11 FFVTSPIYYVNAAPHIGHVY-STLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK 69
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
SP + K ++ D S D F RT+ Q + ++ KL + +
Sbjct: 70 QVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYE 129
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
Y + + FL + + + D CKV +
Sbjct: 130 GWYSISDESFLTPQ-------------------------NITDGVDKDGNPCKVSLESGH 164
Query: 204 I----RDTNHLFLDLPALRNKLEEYIN---NMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256
+ + N++F L A R +L E+ + V + I+A L + R
Sbjct: 165 VVTWVSEENYMF-RLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARA 223
Query: 257 RDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE----------WEQWWKNPENV 306
W +PVP + YVW DA Y++ + +E + + + P +V
Sbjct: 224 TLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADV 281
Query: 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+ +GKD + FH + +P+ LL G L K I + + K SKS G VF
Sbjct: 282 HV---IGKDILKFHAIYWPAFLLSAG--LPLPKKIVAHGWWTKDRKKISKSLG-NVFDPV 335
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
K + +Y+LL D ++ ++ A+ N EL + LGN + R S G
Sbjct: 336 EKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNG 395
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
+ P A E L + + + G YL +++ + + NAY+
Sbjct: 396 EWPS---PAAYTEEDESLIQLIKDLPGTADHYYLIP----DIQKAIIAVFDVLRAINAYV 448
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH 542
+ WKL K D V+ ++ V + LL P +P SV + L + PE H
Sbjct: 449 TDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV-PEVH 503
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 117/541 (21%), Positives = 217/541 (40%), Gaps = 58/541 (10%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ T+ + YVN PH+G++ S L DV R+ R++G + GTDE+G A
Sbjct: 25 QKVFFATTPIYYVNASPHIGHVY-STLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAA 83
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ + + F RT+ P + Q I+KKL +
Sbjct: 84 AKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ Y + + FL + V D + GK CKV
Sbjct: 144 KYEGWYSVSDESFLTAQNV---------------ADGVDRDGK----------PCKVSLE 178
Query: 201 APQI----RDTNHLFLDLPALRNKLEEYINNMS--VAGSWSQNAIQATHAWLKEGLKVRC 254
+ + + N++F L A R +L +Y ++ + + + + T +++GL
Sbjct: 179 SGHVVTWVEEENYMF-RLSAFRERLLKYFHDHPNCIVPEFRRREVIKT---VEKGLFDLS 234
Query: 255 ITRD----LKWGVPVPLERFKEKVFYVWFDAPIGYVS--ITSCYTNEWEQWWKNPENVEL 308
I+R + W +PVP + + YVW DA Y + +T T+ E ++ +
Sbjct: 235 ISRKRESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNR 292
Query: 309 Y----QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364
+ +GKD + FH + +P+ L+ L + + + + K SKS G F
Sbjct: 293 WPADVHVVGKDILKFHAIYWPAFLMSA--ELPLPERLVSHGWWTKDHKKISKSLG-NAFD 349
Query: 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
K ++ +Y+L+ D ++ ++ A+ N EL + LGN ++R ++
Sbjct: 350 PVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVA----- 404
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
P + P+ AE + KTL + ++ L + NA
Sbjct: 405 PKINVNGMWPEP--AEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNA 462
Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
Y+ E+ WKL K D V+ ++ + + L+P MP + E+ L + +
Sbjct: 463 YVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVG 522
Query: 545 L 545
+
Sbjct: 523 M 523
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From
Pyrococcus Abyssi
Length = 107
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 647 ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCN 706
A+LD+RVGKI +V+ HP+AD LYV ++D+G+ + RT+V+GL K+ EE+ R V V+ N
Sbjct: 9 AKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVAN 67
Query: 707 LKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
L+P +RGI S M+L A D +V L+ P K K+G +V
Sbjct: 68 LEPKKLRGIGSQGMLLAA--DDGERVALLMPDKEVKLGAKV 106
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 647 ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCN 706
ARL++RVGKI +V++H +AD LY+ ++DVG+ +TV S LV + EE+ + V VLCN
Sbjct: 10 ARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCN 68
Query: 707 LKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAF 749
L+ MRG S M+LCA T D ++ L+ P + G RV
Sbjct: 69 LQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVVL 111
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus
Horikoshii
Length = 112
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 648 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNL 707
+ ++VG + K +K L +D G + RT+V+G+ IP EE++ + + NL
Sbjct: 14 KFQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNL 72
Query: 708 KPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
KP G++S M++ A T D KV L+ P+ +G RV
Sbjct: 73 KPKKFSGVESQGMLILAETEDG-KVYLIPVPEEVPVGARV 111
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|B Chain B, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|C Chain C, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|D Chain D, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
Length = 111
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 648 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNL 707
++D+RV K+ ++ ++ L + +G+ + RTVV+G+ K+ EE+ + + ++ NL
Sbjct: 14 KVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANL 72
Query: 708 KPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVA 748
KP + GI+S M+L AS +N V + P + K G +++
Sbjct: 73 KPRKIFGIESQGMILAASDGENLSV--IVPDRDVKEGAKLS 111
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
GK+ +L+ PY + H+G++ + DV ARF R++GY ++ G D +G E
Sbjct: 33 GKQYVLVM--FPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTST--PQQTEACQAIFKKLLDNNWL 137
A++ PK+ K+ + I +D +T P+ Q IF K+ +
Sbjct: 90 ALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLA 149
Query: 138 IENTMQQPYCDTCKRFLA-DRLVEGTC 163
+C C+ LA +++VEG C
Sbjct: 150 YRAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
GK+ +L+ PY + H+G++ + DV ARF R++GY ++ G D +G E
Sbjct: 33 GKQYVLVM--FPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTST--PQQTEACQAIFKKLLDNNWL 137
A++ PK+ K+ + I +D +T P+ Q IF K+ +
Sbjct: 90 ALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLA 149
Query: 138 IENTMQQPYCDTCKRFLA-DRLVEGTC 163
+C C+ LA +++VEG C
Sbjct: 150 YRAKGLVNWCPKCQTVLANEQVVEGRC 176
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY-----ICGTDEYGTA 75
++ IT A PY++ H+G+ + DV ARF R++GYN ++ I G+ G A
Sbjct: 33 EKKFYITVAFPYLSGHLHVGHARTYTIP-DVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 76 TETKAMEDNCSPKEICDKYHVIHKDVYK 103
K N PK I I++DVYK
Sbjct: 92 ERIK----NRDPKTIW-----IYRDVYK 110
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY-----ICGTDEYGTA 75
++ IT A PY++ H+G+ + DV ARF R++GYN ++ I G+ G A
Sbjct: 33 EKKFYITVAFPYLSGHLHVGHARTYTIP-DVIARFKRMQGYNVLFPMAWHITGSPIVGIA 91
Query: 76 TETKAMEDNCSPKEICDKYHVIHKDVYK 103
K N PK I I++DVYK
Sbjct: 92 ERIK----NRDPKTIW-----IYRDVYK 110
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus
Ligand-Free Valyl-Trna Synthetase
Length = 862
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
GK +I P V H+G+ + + L D R+ R+RG+ A+++ GTD G AT+
Sbjct: 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQ-DALIRYKRMRGFEAVWLPGTDHAGIATQV 89
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 653 VGKITKVQKHPDADALYVEEIDVGEVQPRTVVSG-----LVKHIPLEEMQERMVCVLCNL 707
VG I +KHPDAD L + ++D+GE +P +V G +H+ + ++ R+ + +
Sbjct: 47 VGYIQSKEKHPDADKLNICQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRLPGGI-KI 105
Query: 708 KPVAMRGIKSHAMV 721
K +RG +S M+
Sbjct: 106 KRAKLRGERSEGMI 119
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
pdb|2E8G|B Chain B, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
Length = 241
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 649 LDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLK 708
+DI VG++ V KHP AD L V +++GE V + L ++E + L
Sbjct: 136 VDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVTNDLT-------VKEGNRVAVALLP 188
Query: 709 PVAMRGIKSHAMVLCASTS--DNTKVELVEPPKS 740
P GI S M L A N K E+ PK
Sbjct: 189 PRNFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKG 222
>pdb|2NZH|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZH|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZO|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|C Chain C, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|D Chain D, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
Length = 113
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 648 RLDIRVGKITKVQKHPDADALYVE-EIDVG-EVQPRTVVSGLVKHIPLEEMQERMVCVLC 705
+LDIR G I K ++ P+A ++ ID G E+ + + + K E + + V +
Sbjct: 12 KLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVV 71
Query: 706 NLKPVAMRGIKSHAMVLCASTSDNTKVELVEP----PKSAKIG 744
N P + G KS +VL V L++P P KIG
Sbjct: 72 NFPPRRIAGFKSEVLVL-GGIPGQGDVVLLQPDQPVPNGTKIG 113
>pdb|3G48|A Chain A, Crystal Structure Of Chaperone Csaa Form Bacillus
Anthracis Str. Ames
pdb|3G48|B Chain B, Crystal Structure Of Chaperone Csaa Form Bacillus
Anthracis Str. Ames
Length = 112
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 649 LDIRVGKITKVQKHPDADALYVE-EIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNL 707
LD+R+G +T ++ +A + EID GE+ + + + K E++ + + + N
Sbjct: 13 LDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNF 72
Query: 708 KPVAMRGIKSHAMVLCASTSDNTKVELVEP----PKSAKI 743
P + G KS +VL + V L++P P KI
Sbjct: 73 PPKRVAGFKSEVLVL-GGVPEAGDVVLLQPNMELPNGTKI 111
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G ++ PY N H+G+ + +L D R+ ++G+ A Y+ G D +G E
Sbjct: 46 GNETFILHDGPPYANGNLHMGHALNKILK-DFIVRYKTMQGFYAPYVPGWDTHGLPIEQA 104
Query: 80 AMEDNCSPKEIC 91
+ K++
Sbjct: 105 LTKKGVDRKKMS 116
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 24/141 (17%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC--SPK 88
P N +PH+G+ D+F R+ +RGY A G D +G E + + S +
Sbjct: 47 PTANGLPHVGHAQARSYK-DLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKR 105
Query: 89 EI-----------C--------DKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFK 129
EI C ++ + + W D+ D + T P E+ K
Sbjct: 106 EIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLE-DAYA-TLEPTYIESIWWSLK 163
Query: 130 KLLDNNWLIENTMQQPYCDTC 150
L D L + PYC C
Sbjct: 164 NLFDRGLLYRDHKVVPYCPRC 184
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 470 QGLKTAMSISSEGNAYLQESQFWK--LYKEDQPSCSIVMRTSVGLVHLL--ACLL----- 520
Q L +++ SE Y++E WK Y ++P C ++ + +GL+ LL ACL+
Sbjct: 411 QQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTD 470
Query: 521 EPFMPSFSVEVNKQLNLQ 538
+ F+ S + K +LQ
Sbjct: 471 QTFLDSICKQFEKNPHLQ 488
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 470 QGLKTAMSISSEGNAYLQESQFWK--LYKEDQPSCSIVMRTSVGLVHLL--ACLL----- 520
Q L +++ SE Y++E WK Y ++P C ++ + +GL+ LL ACL+
Sbjct: 411 QQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTD 470
Query: 521 EPFMPSFSVEVNKQLNLQ 538
+ F+ S + K +LQ
Sbjct: 471 QTFLDSICKQFEKNPHLQ 488
>pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|B Chain B, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|C Chain C, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|D Chain D, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities
Length = 109
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 649 LDIRVGKITKVQKHPDA-DALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNL 707
LD+RVG++ + + H A Y +D+G + + + + + E++ R+V NL
Sbjct: 10 LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69
Query: 708 KPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
+ G S +VL + +V L+ P + +G +V
Sbjct: 70 GAKRVAGFLSEVLVL-GVPDEAGRVVLLAPDREVPLGGKV 108
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 543 ISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKD 580
I C V PW+I P G+++G+ PLF E D
Sbjct: 357 IQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWND 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,004,280
Number of Sequences: 62578
Number of extensions: 1049618
Number of successful extensions: 2724
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2581
Number of HSP's gapped (non-prelim): 59
length of query: 807
length of database: 14,973,337
effective HSP length: 107
effective length of query: 700
effective length of database: 8,277,491
effective search space: 5794243700
effective search space used: 5794243700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)