Query 003611
Match_columns 807
No_of_seqs 528 out of 3504
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02610 probable methionyl-tR 100.0 6E-176 1E-180 1551.4 79.2 791 15-807 10-801 (801)
2 PRK00133 metG methionyl-tRNA s 100.0 2E-140 5E-145 1246.6 65.2 663 22-748 2-673 (673)
3 COG0143 MetG Methionyl-tRNA sy 100.0 1E-135 3E-140 1148.1 53.8 543 21-588 4-554 (558)
4 PRK12267 methionyl-tRNA synthe 100.0 3E-132 7E-137 1176.5 63.9 635 21-748 3-648 (648)
5 KOG1247 Methionyl-tRNA synthet 100.0 4E-118 8E-123 924.6 30.8 562 12-594 4-565 (567)
6 PRK12268 methionyl-tRNA synthe 100.0 7E-109 2E-113 964.9 53.9 547 21-592 2-554 (556)
7 PLN02224 methionine-tRNA ligas 100.0 2E-108 3E-113 949.7 53.4 508 21-585 68-587 (616)
8 TIGR00398 metG methionyl-tRNA 100.0 5E-108 1E-112 952.7 53.6 525 24-579 1-530 (530)
9 KOG0436 Methionyl-tRNA synthet 100.0 4E-107 9E-112 844.0 37.9 479 20-541 37-531 (578)
10 PF09334 tRNA-synt_1g: tRNA sy 100.0 2E-101 5E-106 855.0 24.0 385 24-418 1-391 (391)
11 PRK11893 methionyl-tRNA synthe 100.0 2.2E-95 5E-100 845.5 51.7 502 22-580 1-510 (511)
12 TIGR00422 valS valyl-tRNA synt 100.0 5.4E-86 1.2E-90 803.8 44.0 506 9-537 18-700 (861)
13 PRK14900 valS valyl-tRNA synth 100.0 3.5E-83 7.5E-88 783.2 44.2 506 8-537 31-715 (1052)
14 PRK13208 valS valyl-tRNA synth 100.0 5.5E-83 1.2E-87 771.9 45.5 504 9-536 23-705 (800)
15 PRK05729 valS valyl-tRNA synth 100.0 5.4E-81 1.2E-85 759.1 45.1 501 9-537 22-693 (874)
16 PLN02943 aminoacyl-tRNA ligase 100.0 1.5E-79 3.4E-84 746.3 46.7 509 9-537 73-771 (958)
17 PLN02882 aminoacyl-tRNA ligase 100.0 2.6E-78 5.7E-83 742.2 46.1 513 8-537 20-801 (1159)
18 TIGR00392 ileS isoleucyl-tRNA 100.0 1E-78 2.2E-83 740.8 41.9 494 19-538 33-792 (861)
19 PRK06039 ileS isoleucyl-tRNA s 100.0 9.8E-78 2.1E-82 734.9 44.6 507 9-537 24-772 (975)
20 PRK05743 ileS isoleucyl-tRNA s 100.0 6.7E-78 1.5E-82 730.9 39.2 492 19-536 46-769 (912)
21 COG0525 ValS Valyl-tRNA synthe 100.0 2.2E-76 4.8E-81 682.4 42.9 509 8-538 17-700 (877)
22 PTZ00419 valyl-tRNA synthetase 100.0 6E-76 1.3E-80 722.5 46.1 510 9-537 41-805 (995)
23 PRK13804 ileS isoleucyl-tRNA s 100.0 1.1E-75 2.4E-80 712.8 45.9 492 19-537 51-808 (961)
24 TIGR00395 leuS_arch leucyl-tRN 100.0 4.3E-75 9.3E-80 708.2 42.4 493 8-538 10-779 (938)
25 PLN02381 valyl-tRNA synthetase 100.0 1E-74 2.3E-79 706.9 45.6 508 9-537 113-872 (1066)
26 PLN02843 isoleucyl-tRNA synthe 100.0 1.3E-74 2.8E-79 703.1 45.9 502 9-537 16-797 (974)
27 cd00814 MetRS_core catalytic c 100.0 1.9E-75 4.1E-80 636.0 30.6 316 23-393 1-319 (319)
28 COG0060 IleS Isoleucyl-tRNA sy 100.0 5.6E-75 1.2E-79 679.1 36.0 497 19-538 46-781 (933)
29 PTZ00427 isoleucine-tRNA ligas 100.0 1.3E-73 2.8E-78 697.5 45.1 516 8-537 84-906 (1205)
30 cd00817 ValRS_core catalytic c 100.0 1.3E-74 2.8E-79 642.6 30.0 326 22-393 1-382 (382)
31 TIGR00396 leuS_bact leucyl-tRN 100.0 4.9E-70 1.1E-74 655.5 39.3 460 9-537 14-759 (842)
32 PRK00390 leuS leucyl-tRNA synt 100.0 6.8E-70 1.5E-74 653.4 40.1 457 9-538 18-724 (805)
33 PLN02563 aminoacyl-tRNA ligase 100.0 2.6E-69 5.6E-74 649.3 36.8 461 9-538 93-876 (963)
34 PRK12300 leuS leucyl-tRNA synt 100.0 4.4E-67 9.6E-72 635.5 38.4 461 37-538 1-733 (897)
35 cd00818 IleRS_core catalytic c 100.0 2.1E-66 4.6E-71 567.6 27.7 303 22-393 1-338 (338)
36 PLN02959 aminoacyl-tRNA ligase 100.0 1.6E-63 3.5E-68 610.6 43.2 479 21-535 44-877 (1084)
37 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.3E-63 2.8E-68 542.4 27.5 294 23-393 1-312 (312)
38 COG0495 LeuS Leucyl-tRNA synth 100.0 5.9E-63 1.3E-67 574.0 33.7 460 9-537 18-733 (814)
39 cd00812 LeuRS_core catalytic c 100.0 4E-63 8.7E-68 537.3 23.7 293 23-395 1-314 (314)
40 KOG0433 Isoleucyl-tRNA synthet 100.0 3.8E-59 8.2E-64 513.9 38.9 485 20-538 57-798 (937)
41 KOG0432 Valyl-tRNA synthetase 100.0 2E-58 4.3E-63 518.5 34.1 504 9-536 59-807 (995)
42 PF00133 tRNA-synt_1: tRNA syn 100.0 3.5E-59 7.5E-64 547.1 24.7 364 18-394 19-601 (601)
43 KOG0435 Leucyl-tRNA synthetase 100.0 2.3E-57 5E-62 495.7 25.1 459 19-538 55-782 (876)
44 PTZ00399 cysteinyl-tRNA-synthe 100.0 4.1E-52 8.8E-57 484.4 36.5 404 8-518 46-463 (651)
45 KOG0434 Isoleucyl-tRNA synthet 100.0 7.4E-53 1.6E-57 459.1 27.4 501 18-537 34-785 (1070)
46 PRK14536 cysS cysteinyl-tRNA s 100.0 9.6E-52 2.1E-56 463.0 33.0 384 7-484 8-404 (490)
47 PLN02946 cysteine-tRNA ligase 100.0 9.4E-51 2E-55 458.9 31.6 376 8-488 66-444 (557)
48 PRK00260 cysS cysteinyl-tRNA s 100.0 5.3E-50 1.2E-54 454.8 35.4 364 8-488 9-376 (463)
49 PRK14534 cysS cysteinyl-tRNA s 100.0 5.2E-50 1.1E-54 446.5 31.0 376 8-485 9-398 (481)
50 TIGR00435 cysS cysteinyl-tRNA 100.0 8.1E-50 1.8E-54 452.0 32.3 364 8-483 7-375 (465)
51 TIGR03447 mycothiol_MshC cyste 100.0 2.2E-50 4.8E-55 441.3 26.8 357 8-484 24-387 (411)
52 PRK12418 cysteinyl-tRNA synthe 100.0 5.6E-50 1.2E-54 436.7 26.2 353 19-490 6-366 (384)
53 KOG2241 tRNA-binding protein [ 100.0 1.4E-50 3E-55 404.3 16.0 170 638-807 86-255 (255)
54 PRK14535 cysS cysteinyl-tRNA s 100.0 1E-48 2.2E-53 442.9 31.5 361 8-485 234-613 (699)
55 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.8E-47 3.9E-52 416.1 28.6 365 7-488 7-377 (464)
56 KOG2007 Cysteinyl-tRNA synthet 100.0 8.9E-42 1.9E-46 364.5 30.6 379 7-490 40-428 (586)
57 PF01406 tRNA-synt_1e: tRNA sy 100.0 9.7E-43 2.1E-47 362.4 14.5 295 15-402 1-299 (300)
58 KOG0437 Leucyl-tRNA synthetase 100.0 1.4E-39 3E-44 358.4 25.7 487 18-539 40-872 (1080)
59 cd00672 CysRS_core catalytic c 100.0 9.2E-39 2E-43 325.1 18.7 206 8-394 6-213 (213)
60 PRK01611 argS arginyl-tRNA syn 100.0 1.4E-34 3E-39 333.3 30.1 338 20-489 109-468 (507)
61 cd00674 LysRS_core_class_I cat 100.0 4.6E-34 1E-38 309.1 19.5 271 21-397 18-318 (353)
62 TIGR00456 argS arginyl-tRNA sy 100.0 1.1E-30 2.4E-35 304.3 32.6 352 21-506 111-541 (566)
63 PRK00750 lysK lysyl-tRNA synth 100.0 1.6E-31 3.5E-36 305.5 13.0 269 22-395 23-321 (510)
64 TIGR02222 chap_CsaA export-rel 99.9 1.4E-27 2.9E-32 215.6 10.1 103 645-748 3-107 (107)
65 cd02798 tRNA_bind_CsaA tRNA-bi 99.9 2.9E-27 6.2E-32 214.1 10.0 102 645-747 5-107 (107)
66 TIGR00467 lysS_arch lysyl-tRNA 99.9 8.4E-27 1.8E-31 264.4 14.1 266 22-398 18-317 (515)
67 PRK10089 tRNA-binding protein; 99.9 8.6E-27 1.9E-31 212.6 10.1 103 645-748 8-112 (112)
68 PRK12451 arginyl-tRNA syntheta 99.9 2.3E-23 4.9E-28 242.1 35.1 336 21-490 112-525 (562)
69 cd02799 tRNA_bind_EMAP-II_like 99.9 2.2E-25 4.7E-30 202.1 12.9 105 644-748 1-105 (105)
70 cd00671 ArgRS_core catalytic c 99.9 6.9E-24 1.5E-28 217.6 18.7 123 24-150 2-124 (212)
71 TIGR00399 metG_C_term methiony 99.9 1.6E-24 3.5E-29 204.1 12.8 102 645-748 36-137 (137)
72 PF01588 tRNA_bind: Putative t 99.9 2E-24 4.3E-29 191.9 11.2 95 651-746 1-95 (95)
73 COG0018 ArgS Arginyl-tRNA synt 99.9 2.3E-22 5E-27 230.5 30.9 341 21-490 116-538 (577)
74 cd02800 tRNA_bind_EcMetRS_like 99.9 2.3E-24 5E-29 195.5 11.3 101 645-748 5-105 (105)
75 COG0073 ARC1 EMAP domain [Gene 99.9 2.8E-24 6E-29 199.5 10.6 103 645-747 15-123 (123)
76 PLN02286 arginine-tRNA ligase 99.9 5.4E-21 1.2E-25 222.4 33.3 339 20-489 115-539 (576)
77 cd02153 tRNA_bindingDomain The 99.9 3E-22 6.5E-27 179.9 11.4 97 651-747 1-99 (99)
78 cd07957 Anticodon_Ia_Met Antic 99.8 2.2E-18 4.7E-23 162.6 13.4 128 402-535 1-129 (129)
79 PF01921 tRNA-synt_1f: tRNA sy 99.8 4E-20 8.8E-25 198.0 -0.3 263 20-399 21-327 (360)
80 COG1384 LysS Lysyl-tRNA synthe 99.7 1.7E-17 3.8E-22 181.9 16.2 89 22-112 19-126 (521)
81 cd00802 class_I_aaRS_core cata 99.7 1.9E-17 4.1E-22 159.5 13.2 77 26-103 1-77 (143)
82 cd02796 tRNA_bind_bactPheRS tR 99.7 8.9E-18 1.9E-22 152.0 8.3 91 651-747 1-103 (103)
83 PF00750 tRNA-synt_1d: tRNA sy 99.7 7.8E-16 1.7E-20 169.8 13.8 129 19-148 17-201 (354)
84 cd07959 Anticodon_Ia_Leu_AEc A 99.6 8.4E-15 1.8E-19 135.8 12.9 115 403-535 2-117 (117)
85 cd07962 Anticodon_Ia_Val Antic 99.5 1.4E-13 2.9E-18 131.3 16.3 133 393-535 1-135 (135)
86 cd07960 Anticodon_Ia_Ile_BEm A 99.5 2.3E-13 5.1E-18 136.3 16.4 136 393-537 1-141 (180)
87 cd07958 Anticodon_Ia_Leu_BEm A 99.5 1.7E-13 3.6E-18 126.8 11.8 110 409-535 8-117 (117)
88 PRK04156 gltX glutamyl-tRNA sy 99.5 1.3E-12 2.8E-17 149.4 20.8 96 25-139 102-197 (567)
89 TIGR00472 pheT_bact phenylalan 99.4 1.8E-13 4E-18 166.2 8.9 91 651-748 46-149 (798)
90 cd07961 Anticodon_Ia_Ile_ABEc 99.4 1.3E-11 2.8E-16 124.1 16.4 139 393-537 1-142 (183)
91 PRK00629 pheT phenylalanyl-tRN 99.4 6.5E-13 1.4E-17 161.1 7.6 95 650-747 44-146 (791)
92 PF08264 Anticodon_1: Anticodo 99.3 7.1E-12 1.5E-16 121.9 11.3 90 445-535 1-92 (153)
93 cd09287 GluRS_non_core catalyt 99.3 6.4E-11 1.4E-15 121.8 15.9 94 27-139 4-97 (240)
94 cd07375 Anticodon_Ia_like Anti 99.2 1.7E-10 3.7E-15 106.2 12.6 110 408-524 8-117 (117)
95 COG2517 Predicted RNA-binding 99.1 1.6E-10 3.4E-15 109.4 7.0 75 648-729 119-193 (219)
96 KOG4426 Arginyl-tRNA synthetas 99.0 5.3E-07 1.1E-11 96.6 29.0 349 12-490 178-613 (656)
97 PLN03233 putative glutamate-tR 99.0 2.9E-08 6.2E-13 112.7 20.7 94 25-139 12-105 (523)
98 TIGR00464 gltX_bact glutamyl-t 99.0 8.3E-09 1.8E-13 117.7 16.0 89 30-139 7-96 (470)
99 PRK12558 glutamyl-tRNA synthet 98.9 2.1E-08 4.6E-13 112.4 16.7 89 30-139 8-96 (445)
100 PRK05347 glutaminyl-tRNA synth 98.9 8.6E-08 1.9E-12 109.2 19.6 94 25-139 30-124 (554)
101 TIGR00463 gltX_arch glutamyl-t 98.9 1.3E-07 2.8E-12 108.6 21.3 95 24-139 93-187 (560)
102 PRK01406 gltX glutamyl-tRNA sy 98.9 7.8E-09 1.7E-13 118.0 10.9 92 27-139 7-106 (476)
103 TIGR02306 RNA_lig_DRB0094 RNA 98.8 3.2E-09 7E-14 114.7 6.1 71 651-726 3-96 (341)
104 PRK14703 glutaminyl-tRNA synth 98.8 7.5E-08 1.6E-12 114.3 17.7 94 25-139 32-126 (771)
105 TIGR00440 glnS glutaminyl-tRNA 98.8 7.2E-08 1.6E-12 109.6 16.6 90 29-139 5-95 (522)
106 PLN02907 glutamate-tRNA ligase 98.8 2E-07 4.4E-12 111.0 20.7 94 25-139 214-307 (722)
107 PTZ00402 glutamyl-tRNA synthet 98.8 3.8E-07 8.2E-12 104.8 21.0 93 25-138 53-146 (601)
108 cd00418 GlxRS_core catalytic c 98.8 1E-07 2.2E-12 97.9 14.8 86 29-135 6-92 (230)
109 cd00807 GlnRS_core catalytic c 98.8 1.8E-07 3.8E-12 96.2 16.4 92 27-139 4-95 (238)
110 PLN02859 glutamine-tRNA ligase 98.8 1.9E-07 4.1E-12 109.7 18.5 94 25-139 265-358 (788)
111 PRK12410 glutamylglutaminyl-tR 98.8 5.5E-08 1.2E-12 108.6 13.1 89 30-139 5-93 (433)
112 PTZ00437 glutaminyl-tRNA synth 98.8 1.7E-07 3.7E-12 106.7 16.5 93 26-139 53-145 (574)
113 PRK14895 gltX glutamyl-tRNA sy 98.7 3.4E-07 7.3E-12 104.0 18.0 85 312-401 202-288 (513)
114 cd00808 GluRS_core catalytic c 98.7 3E-07 6.5E-12 95.2 14.7 56 326-385 137-193 (239)
115 COG0008 GlnS Glutamyl- and glu 98.6 1.6E-07 3.5E-12 106.0 12.1 94 25-139 10-104 (472)
116 PLN02627 glutamyl-tRNA synthet 98.6 3.9E-07 8.5E-12 103.7 14.9 93 26-139 47-148 (535)
117 PF00749 tRNA-synt_1c: tRNA sy 98.5 1.5E-06 3.3E-11 94.4 13.2 89 30-139 7-96 (314)
118 KOG1195 Arginyl-tRNA synthetas 98.3 0.00016 3.6E-09 79.9 23.6 132 351-489 365-528 (567)
119 cd07956 Anticodon_Ia_Arg Antic 97.9 0.00026 5.7E-09 69.1 14.6 114 371-489 2-117 (156)
120 KOG1149 Glutamyl-tRNA syntheta 97.9 0.00023 5.1E-09 77.2 14.0 73 334-407 262-336 (524)
121 TIGR03838 queuosine_YadB gluta 97.7 5.8E-05 1.3E-09 79.9 7.2 89 30-139 6-95 (272)
122 PRK05710 glutamyl-Q tRNA(Asp) 97.6 6.1E-05 1.3E-09 80.6 5.7 93 26-139 7-100 (299)
123 PRK12556 tryptophanyl-tRNA syn 97.5 0.00056 1.2E-08 74.9 10.1 81 28-121 8-91 (332)
124 KOG1147 Glutamyl-tRNA syntheta 97.0 0.0025 5.5E-08 70.9 8.5 97 25-142 201-297 (712)
125 PF05746 DALR_1: DALR anticodo 95.1 0.15 3.4E-06 46.9 9.5 79 411-490 2-80 (119)
126 PRK12285 tryptophanyl-tRNA syn 94.2 0.25 5.5E-06 54.9 10.0 76 21-110 64-139 (368)
127 cd00806 TrpRS_core catalytic c 93.7 0.22 4.8E-06 53.5 8.3 72 26-110 2-73 (280)
128 COG0180 TrpS Tryptophanyl-tRNA 93.6 0.31 6.6E-06 52.6 9.0 90 22-124 4-97 (314)
129 KOG1148 Glutaminyl-tRNA synthe 93.5 0.23 4.9E-06 56.6 8.1 94 25-139 249-342 (764)
130 PLN02486 aminoacyl-tRNA ligase 93.3 0.55 1.2E-05 52.5 10.7 87 21-120 71-159 (383)
131 TIGR00233 trpS tryptophanyl-tR 92.2 0.47 1E-05 52.1 8.2 75 23-110 2-76 (328)
132 PHA02142 putative RNA ligase 91.5 0.45 9.8E-06 52.3 7.0 77 648-724 7-101 (366)
133 smart00836 DALR_1 DALR anticod 91.3 2.4 5.3E-05 39.1 11.0 77 411-490 2-83 (122)
134 PF09190 DALR_2: DALR domain; 90.7 0.48 1E-05 38.5 4.8 26 459-484 2-28 (63)
135 PRK13354 tyrosyl-tRNA syntheta 90.2 0.19 4.1E-06 56.9 2.7 77 21-104 31-110 (410)
136 cd00805 TyrRS_core catalytic c 90.1 0.21 4.6E-06 53.3 2.9 75 27-108 4-81 (269)
137 cd00395 Tyr_Trp_RS_core cataly 90.0 0.23 4.9E-06 53.2 3.0 68 309-383 156-225 (273)
138 PRK08560 tyrosyl-tRNA syntheta 89.7 0.87 1.9E-05 50.1 7.4 76 21-110 28-103 (329)
139 PRK12284 tryptophanyl-tRNA syn 89.1 1.5 3.3E-05 49.5 8.7 94 26-133 5-101 (431)
140 PRK13354 tyrosyl-tRNA syntheta 89.1 0.81 1.8E-05 51.8 6.7 68 309-383 189-257 (410)
141 TIGR00233 trpS tryptophanyl-tR 89.0 1.1 2.4E-05 49.2 7.5 67 309-383 142-217 (328)
142 COG1656 Uncharacterized conser 89.0 0.64 1.4E-05 45.0 4.8 86 52-154 18-107 (165)
143 PLN02886 aminoacyl-tRNA ligase 88.8 1.9 4.2E-05 48.1 9.2 83 26-123 49-134 (389)
144 cd00395 Tyr_Trp_RS_core cataly 88.4 0.86 1.9E-05 48.8 6.0 71 32-108 7-80 (273)
145 PRK14714 DNA polymerase II lar 88.3 1.3 2.7E-05 55.5 7.9 77 122-204 642-721 (1337)
146 PRK05912 tyrosyl-tRNA syntheta 87.7 0.34 7.4E-06 54.9 2.6 68 309-383 191-259 (408)
147 PF00579 tRNA-synt_1b: tRNA sy 87.4 0.27 5.9E-06 53.2 1.5 43 22-70 4-46 (292)
148 PRK05912 tyrosyl-tRNA syntheta 87.0 1.2 2.5E-05 50.6 6.3 80 22-109 32-114 (408)
149 PF01927 Mut7-C: Mut7-C RNAse 85.4 0.61 1.3E-05 45.0 2.6 116 52-187 12-136 (147)
150 smart00840 DALR_2 This DALR do 84.9 1.7 3.7E-05 34.1 4.6 29 459-487 2-31 (56)
151 PTZ00385 lysyl-tRNA synthetase 84.8 0.13 2.9E-06 60.8 -2.7 50 659-711 609-659 (659)
152 cd00805 TyrRS_core catalytic c 84.4 1.2 2.6E-05 47.5 4.6 67 309-383 154-221 (269)
153 PTZ00126 tyrosyl-tRNA syntheta 82.6 3.3 7.1E-05 46.5 7.2 78 22-110 65-142 (383)
154 PRK12284 tryptophanyl-tRNA syn 82.2 0.56 1.2E-05 52.8 1.0 69 309-383 151-226 (431)
155 PTZ00126 tyrosyl-tRNA syntheta 82.0 0.83 1.8E-05 51.2 2.2 66 309-383 213-282 (383)
156 cd00806 TrpRS_core catalytic c 81.8 0.97 2.1E-05 48.5 2.6 57 309-366 140-205 (280)
157 PF00579 tRNA-synt_1b: tRNA sy 81.4 2.5 5.5E-05 45.6 5.7 57 309-367 152-213 (292)
158 PRK12282 tryptophanyl-tRNA syn 81.1 0.96 2.1E-05 49.8 2.3 70 27-110 6-75 (333)
159 PRK00927 tryptophanyl-tRNA syn 80.6 4.4 9.5E-05 44.7 7.3 79 28-121 6-87 (333)
160 PRK12283 tryptophanyl-tRNA syn 80.4 0.73 1.6E-05 51.4 1.1 82 26-122 5-90 (398)
161 PRK08560 tyrosyl-tRNA syntheta 80.0 1.2 2.5E-05 49.2 2.5 54 309-366 171-228 (329)
162 PRK12285 tryptophanyl-tRNA syn 79.7 0.92 2E-05 50.5 1.6 66 309-383 206-276 (368)
163 PRK12282 tryptophanyl-tRNA syn 78.2 7.6 0.00016 42.8 8.2 58 309-366 145-209 (333)
164 PRK00927 tryptophanyl-tRNA syn 77.9 1.2 2.6E-05 49.1 1.8 69 309-383 141-220 (333)
165 PRK04023 DNA polymerase II lar 77.7 4 8.6E-05 50.0 6.1 76 134-223 617-692 (1121)
166 PRK01233 glyS glycyl-tRNA synt 77.1 33 0.00071 41.5 13.5 100 404-509 565-664 (682)
167 COG0180 TrpS Tryptophanyl-tRNA 76.4 1.1 2.5E-05 48.3 1.1 32 335-366 177-212 (314)
168 TIGR00234 tyrS tyrosyl-tRNA sy 75.1 5.6 0.00012 44.6 6.2 40 23-68 30-70 (377)
169 COG0162 TyrS Tyrosyl-tRNA synt 74.3 3.4 7.4E-05 46.4 4.2 73 21-102 32-107 (401)
170 TIGR00234 tyrS tyrosyl-tRNA sy 72.5 3.1 6.7E-05 46.7 3.3 18 349-366 217-234 (377)
171 COG0751 GlyS Glycyl-tRNA synth 71.6 47 0.001 39.7 12.7 116 371-489 541-656 (691)
172 TIGR00211 glyS glycyl-tRNA syn 69.6 63 0.0014 39.2 13.5 117 371-490 542-658 (691)
173 PRK12283 tryptophanyl-tRNA syn 68.6 14 0.00031 41.4 7.4 42 336-383 245-288 (398)
174 PLN02486 aminoacyl-tRNA ligase 67.4 2.3 4.9E-05 47.7 0.8 65 309-383 222-290 (383)
175 COG0162 TyrS Tyrosyl-tRNA synt 67.1 2.3 4.9E-05 47.8 0.8 52 309-365 183-236 (401)
176 PTZ00348 tyrosyl-tRNA syntheta 65.3 21 0.00045 43.1 8.3 82 23-116 32-116 (682)
177 PRK14908 glycyl-tRNA synthetas 61.4 94 0.002 39.2 13.0 128 371-509 857-984 (1000)
178 PRK06266 transcription initiat 57.3 7.4 0.00016 38.8 2.3 30 176-205 118-149 (178)
179 PF13248 zf-ribbon_3: zinc-rib 55.9 7.5 0.00016 25.6 1.4 8 176-183 17-24 (26)
180 PRK00398 rpoP DNA-directed RNA 55.6 7.6 0.00017 29.3 1.6 29 178-206 6-35 (46)
181 PF12773 DZR: Double zinc ribb 54.8 12 0.00025 28.7 2.6 29 174-202 11-39 (50)
182 cd07963 Anticodon_Ia_Cys Antic 53.4 20 0.00043 34.8 4.6 34 454-487 33-67 (156)
183 PF09862 DUF2089: Protein of u 52.8 12 0.00025 34.3 2.6 47 178-227 1-48 (113)
184 PTZ00348 tyrosyl-tRNA syntheta 52.4 7.9 0.00017 46.6 1.9 54 309-366 178-236 (682)
185 PF13240 zinc_ribbon_2: zinc-r 49.9 12 0.00025 24.0 1.5 8 176-183 14-21 (23)
186 smart00659 RPOLCX RNA polymera 48.6 14 0.0003 27.8 2.0 31 177-207 4-34 (44)
187 PRK14559 putative protein seri 46.2 15 0.00031 44.2 2.8 23 177-202 29-51 (645)
188 COG1996 RPC10 DNA-directed RNA 45.2 15 0.00033 28.2 1.8 31 177-207 8-39 (49)
189 KOG2145 Cytoplasmic tryptophan 44.4 26 0.00055 37.2 3.9 46 20-71 82-128 (397)
190 PF03833 PolC_DP2: DNA polymer 43.9 7.6 0.00017 46.9 0.0 55 139-204 650-704 (900)
191 cd07955 Anticodon_Ia_Cys_like 43.6 79 0.0017 27.0 6.2 28 455-482 29-57 (81)
192 COG2185 Sbm Methylmalonyl-CoA 41.3 70 0.0015 30.6 6.0 70 39-136 23-92 (143)
193 PRK14714 DNA polymerase II lar 40.3 18 0.00039 45.8 2.4 31 647-677 975-1005(1337)
194 TIGR00640 acid_CoA_mut_C methy 39.9 1.1E+02 0.0024 28.8 7.2 65 47-136 17-82 (132)
195 KOG2713 Mitochondrial tryptoph 37.9 1.9E+02 0.0041 30.9 8.9 89 27-129 17-110 (347)
196 PRK14559 putative protein seri 37.2 29 0.00062 41.8 3.4 36 145-186 16-52 (645)
197 PF03604 DNA_RNApol_7kD: DNA d 37.0 31 0.00067 24.1 2.1 28 178-205 3-30 (32)
198 PRK14529 adenylate kinase; Pro 36.8 1.3E+02 0.0029 31.1 7.8 135 67-227 40-180 (223)
199 COG5270 PUA domain (predicted 34.9 25 0.00054 34.7 2.0 24 132-155 2-25 (202)
200 PRK05580 primosome assembly pr 33.5 3E+02 0.0065 33.6 11.4 135 121-281 353-507 (679)
201 PF05191 ADK_lid: Adenylate ki 33.2 19 0.00041 25.8 0.6 14 192-205 21-34 (36)
202 PF08271 TF_Zn_Ribbon: TFIIB z 32.2 33 0.00071 25.4 1.8 11 177-187 21-31 (43)
203 cd00350 rubredoxin_like Rubred 31.5 30 0.00065 24.1 1.4 24 177-201 3-26 (33)
204 PF07754 DUF1610: Domain of un 30.7 29 0.00062 22.6 1.1 20 180-199 3-23 (24)
205 COG1933 Archaeal DNA polymeras 30.6 33 0.00071 35.4 2.0 79 123-204 117-195 (253)
206 COG3357 Predicted transcriptio 30.5 33 0.00071 29.9 1.7 25 177-201 60-85 (97)
207 cd06259 YdcF-like YdcF-like. Y 29.3 4.8E+02 0.01 24.5 11.5 104 24-134 3-120 (150)
208 PRK05710 glutamyl-Q tRNA(Asp) 29.2 66 0.0014 34.9 4.2 65 309-385 194-263 (299)
209 PF03698 UPF0180: Uncharacteri 29.2 50 0.0011 28.3 2.6 48 51-98 12-79 (80)
210 TIGR00595 priA primosomal prot 28.6 89 0.0019 36.6 5.6 51 139-202 208-263 (505)
211 cd02071 MM_CoA_mut_B12_BD meth 28.0 2.5E+02 0.0054 25.8 7.4 65 47-136 14-79 (122)
212 PRK00564 hypA hydrogenase nick 27.7 51 0.0011 30.4 2.7 8 194-201 90-97 (117)
213 COG1439 Predicted nucleic acid 26.6 44 0.00095 33.1 2.1 28 176-206 140-167 (177)
214 TIGR00373 conserved hypothetic 26.4 36 0.00079 33.2 1.6 44 176-226 110-155 (158)
215 PRK12496 hypothetical protein; 25.6 34 0.00074 33.6 1.2 32 177-209 129-160 (164)
216 COG1198 PriA Primosomal protei 25.4 62 0.0013 39.5 3.5 50 139-201 430-484 (730)
217 PRK03824 hypA hydrogenase nick 25.2 2.4E+02 0.0052 26.7 6.8 37 117-154 37-80 (135)
218 PF14671 DSPn: Dual specificit 25.0 60 0.0013 31.1 2.7 55 33-92 40-105 (141)
219 TIGR01206 lysW lysine biosynth 24.9 39 0.00084 26.7 1.1 16 194-209 24-39 (54)
220 cd01675 RNR_III Class III ribo 24.2 81 0.0018 37.4 4.2 22 177-201 520-541 (555)
221 cd00729 rubredoxin_SM Rubredox 24.2 45 0.00098 23.5 1.3 24 178-202 5-28 (34)
222 PRK06266 transcription initiat 24.1 97 0.0021 30.9 4.1 40 136-187 109-148 (178)
223 PF07394 DUF1501: Protein of u 23.9 1.6E+02 0.0035 33.1 6.4 63 49-116 234-305 (392)
224 PLN02886 aminoacyl-tRNA ligase 23.8 39 0.00085 38.0 1.4 31 336-366 229-267 (389)
225 smart00661 RPOL9 RNA polymeras 23.3 47 0.001 25.4 1.3 24 177-200 2-28 (52)
226 PRK03094 hypothetical protein; 23.3 75 0.0016 27.2 2.6 46 52-97 13-78 (80)
227 TIGR03838 queuosine_YadB gluta 22.9 54 0.0012 35.0 2.2 45 309-360 187-236 (272)
228 PF06940 DUF1287: Domain of un 22.8 67 0.0015 31.2 2.5 30 29-62 21-50 (164)
229 PRK05978 hypothetical protein; 22.5 58 0.0013 31.4 2.0 9 160-170 33-41 (148)
230 KOG0780 Signal recognition par 22.4 5E+02 0.011 29.3 9.2 106 11-133 90-207 (483)
231 PRK00420 hypothetical protein; 21.9 52 0.0011 30.1 1.5 10 194-203 42-51 (112)
232 COG2046 MET3 ATP sulfurylase ( 21.7 2.3E+02 0.0051 31.4 6.6 117 33-156 191-332 (397)
233 TIGR00125 cyt_tran_rel cytidyl 21.7 90 0.0019 24.9 2.8 29 35-71 9-37 (66)
234 PF10571 UPF0547: Uncharacteri 21.2 66 0.0014 21.3 1.5 7 177-183 16-22 (26)
235 PF06750 DiS_P_DiS: Bacterial 20.7 66 0.0014 28.3 1.9 28 176-203 34-69 (92)
236 PRK10413 hydrogenase 2 accesso 20.4 2.6E+02 0.0056 24.2 5.3 49 653-706 6-54 (82)
237 PRK14890 putative Zn-ribbon RN 20.3 74 0.0016 25.5 1.8 46 145-199 8-55 (59)
No 1
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=6.3e-176 Score=1551.40 Aligned_cols=791 Identities=83% Similarity=1.356 Sum_probs=694.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHH
Q 003611 15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKY 94 (807)
Q Consensus 15 ~~~~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~ 94 (807)
.+|..|+++||||||+|||||.|||||+++++|.+||++||+||+|++|+|++|||+||+||+.+|+++|++|+++|++|
T Consensus 10 ~~~~~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~ 89 (801)
T PLN02610 10 KLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKY 89 (801)
T ss_pred cCCCCCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHH
Confidence 56888999999999999999999999999878889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCC
Q 003611 95 HVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR 174 (807)
Q Consensus 95 ~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~ 174 (807)
++.|+++|++|||++|.|+||++++|.+.||++|.+|+++|+||++.+++|||++|++||+|++|+|+||..+|++++++
T Consensus 90 ~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~ 169 (801)
T PLN02610 90 HAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSAR 169 (801)
T ss_pred HHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCcccee
Q 003611 175 GDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRC 254 (807)
Q Consensus 175 g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ 254 (807)
||+||.||+.+++.+|++|+|++||+++++++++||||+|++|+++|.+|+++++..+.|+++.++.+.+||++||+|||
T Consensus 170 Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~ 249 (801)
T PLN02610 170 GDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRC 249 (801)
T ss_pred cchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998776678999999889999999999999
Q ss_pred eeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCC
Q 003611 255 ITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (807)
Q Consensus 255 ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~ 334 (807)
|||++.||||||.+++++||+||||||++||+|++.+|.++|.+||++|.+++++||+||||++||+++|||||||+|++
T Consensus 250 IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~ 329 (801)
T PLN02610 250 ITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 329 (801)
T ss_pred eeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCC
Confidence 99999999999998888999999999999999998788888999998666888999999999999999999999999998
Q ss_pred cccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHH
Q 003611 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (807)
Q Consensus 335 ~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (807)
|++|++|++||||+++|+|||||+||+|+|.++++..||+|++||||++++|+++|.+|||++|.+++|++|+|+|||++
T Consensus 330 ~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv 409 (801)
T PLN02610 330 WTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFI 409 (801)
T ss_pred cCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999998339999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003611 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (807)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (807)
+|+++|+.+...++++|.+|.....+..+.|+++++.++.+.+++.++|++|+|++|++.|+++++.+|+||+..+||++
T Consensus 410 ~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L 489 (801)
T PLN02610 410 NRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 489 (801)
T ss_pred HHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 99999998300016889988643222345688999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCCCCC
Q 003611 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (807)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (807)
.+++.+++.+++++++++++.+++||+||||++|++||++||++... .+|.+....+......|..++.|++|+++++|
T Consensus 490 ~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~l 568 (801)
T PLN02610 490 YKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLPPES-LSLSDEKGEVARAKRPWELVPAGHKIGTPEPL 568 (801)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCCccc-ccchhccccccccccccccCCCCCCCCCCCCC
Confidence 88777778899999999999999999999999999999999986432 12321000010011235556789999999999
Q ss_pred ccCCChhHHHHHHhhhcCChhhHHHHHHHHH-HHHHHHhhhccccCCCCccccccccccccCCCCCCCCcCCceeeeEEE
Q 003611 575 FKELKDDEVEFFRSKFAGSQADRIIRAEAEA-AKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRV 653 (807)
Q Consensus 575 F~ri~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 653 (807)
|+||++++++++.+++.+.+.++.+++++.+ ++.+++.++++ ..+.++++..++++++..+.++....+||++|||||
T Consensus 569 F~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlrV 647 (801)
T PLN02610 569 FKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKA-LSDGGKKKQGKKAGGGGKSKAAAEREIDVSRLDIRV 647 (801)
T ss_pred CCCCCHHHHHHHHHHhccchhhhhhhhhccccccccccccccc-ccccccccccccccccccccccccccccceeeeeEE
Confidence 9999999998887777654322111111000 00000000000 000000000000000000011112235899999999
Q ss_pred EEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeeeecCCCCeEE
Q 003611 654 GKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVE 733 (807)
Q Consensus 654 g~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~~~~~~~~~~ 733 (807)
|+|++|++||+|||||+++||+|++++||||||+++++++|+|+|++|++++||||++|||++|+|||||++++++++++
T Consensus 648 g~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~e~l~G~~Vvv~~nlkp~klrGv~S~GMll~a~~~~~~~~~ 727 (801)
T PLN02610 648 GLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNSDHTKVE 727 (801)
T ss_pred EEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCChHHhCCCEEEEEEEecccccCCcccceeEEecccCCCCceE
Confidence 99999999999999999999999878999999999999999999999999999999999999999999999876655799
Q ss_pred EEcCCCCCCCCceeecCCCCCCCCCCCCcchhhHHHhccCceECCCeEEEecCeeeEecCCceeecccCCcccC
Q 003611 734 LVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 807 (807)
Q Consensus 734 ll~~~~~~~~G~~v~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 807 (807)
|+.||.++++|++|.|+|++++|++++++|||+|++|+++|+|+++|+|+|+|.+|+|++|+|++++|+||+|+
T Consensus 728 ll~~~~~~~~G~~v~~~~~~~~p~~~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 801 (801)
T PLN02610 728 LVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYKDVPFTTSAGVCKVASIANGSIR 801 (801)
T ss_pred EEeCCCCCCCCCEEEeCCCCCCcccccCcccchHHHhCCCCEECCceEEEECCEEEEecCCCeEcccCCCCEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-140 Score=1246.56 Aligned_cols=663 Identities=34% Similarity=0.610 Sum_probs=595.6
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (807)
++||||+|||||||.|||||+++ ++.+|+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|++|++.|+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~-~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVE-YIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHH-HHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999996 68899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhcc
Q 003611 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (807)
Q Consensus 102 ~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~c 181 (807)
|++|||++|.|+||++++|.+.|+++|.+|+++|+||++++.+|||+.|++||+|++|+|+||. |++.+++|++||.|
T Consensus 81 ~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~--C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPK--CGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCC--CCCcccCCchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCC
Q 003611 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261 (807)
Q Consensus 182 G~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~W 261 (807)
|+.+++.+|++|+|.+||++++++.++||||+|++|+++|++|+++.+ .|++++++++.+||++||+||||||++.|
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~d~~ISR~~~W 235 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG---ELQPNVANKMKEWLEEGLQDWDISRDAPY 235 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhCCCcccceeeeCCc
Confidence 999999999999999999999999999999999999999999997543 48999999999999999999999999999
Q ss_pred -CCccCccccCCcEEEEEecccchhhhcccCCch-----hHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCc
Q 003611 262 -GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (807)
Q Consensus 262 -GipvP~~~~~~~viyVWfDA~~~yis~~~~~~~-----~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~ 335 (807)
|||+|++ +++++||||||++||++.+.+|.+ .|+.||+.+.+++++||+||||++||+++|||||+++|+
T Consensus 236 ~GipvP~~--~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-- 311 (673)
T PRK00133 236 FGFEIPGA--PGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-- 311 (673)
T ss_pred cceECCCC--CCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC--
Confidence 9999965 799999999999999998866642 589999433457789999999999999999999999886
Q ss_pred ccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCC-CCccccHHHHHHHHhHHHHHHHHHHH
Q 003611 336 TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKSNNELLNNLGNFI 414 (807)
Q Consensus 336 ~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~-~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (807)
++|+++++||||+.+|+|||||+||+|+|.|+++ .||+|++||||++.++.+ +|.+|+++.+..++|++|+++++|++
T Consensus 312 ~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie-~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 312 RLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLD-HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred CCCCEEeeeccEEecCCcccccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999 699999999999999999 99999999999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003611 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (807)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (807)
+|+.+++.+ ++++.+|. .+.|+++++.++.+.+++.++|++|+++.|++.+++|++.+|+|++..+||.+
T Consensus 391 ~R~~~~~~k----~~~~~~~~------~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~ 460 (673)
T PRK00133 391 SRTAGFINK----RFDGKLPD------ALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKL 460 (673)
T ss_pred HHHHHHHHH----hcCCCCCC------CcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 999999887 56666552 12478999999999999999999999999999999999999999999999998
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCCCCC
Q 003611 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (807)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (807)
.+++.+++.+++++++++++.+++||+||||++|++||++||.+. ..|.+ ++.+..|++++++++|
T Consensus 461 ~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~~---~~~~~-----------~~~~~~g~~~~~~~~l 526 (673)
T PRK00133 461 AKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLEE---LTWDD-----------AQQPLAGHPINKFKIL 526 (673)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCCc---cChhh-----------hcCCCCCCCcCCCCcC
Confidence 877777788999999999999999999999999999999999852 12322 1224479999999999
Q ss_pred ccCCChhHHHHHHhhhcCChhhHHHHHHHHHHHHHHHhhhccccCCCCccccccccccccCCCCCCCCcC-CceeeeEEE
Q 003611 575 FKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEI-SIARLDIRV 653 (807)
Q Consensus 575 F~ri~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v 653 (807)
|+|+++++++++.+++++.++. + ++ + + .++++. +..|.+++..+ +|.++||||
T Consensus 527 f~~~~~~~~~~~~~~~~~~~~~-----~---~~-~---~--------~~~~~~------~~~~~~~~~~~~~f~~~di~v 580 (673)
T PRK00133 527 FTRIEDKQIEALIEASKEAAAA-----K---AA-A---A--------AAAAPL------AEEPIAETISFDDFAKVDLRV 580 (673)
T ss_pred CcCCCHHHHHHHHHHhhcchhh-----c---cc-c---h--------hccccc------ccCccccccCHHHHhhhhcce
Confidence 9999999888776654332110 0 00 0 0 000000 01122334555 799999999
Q ss_pred EEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeecccccc-ccccceeEEeeeecCCCCeE
Q 003611 654 GKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAM-RGIKSHAMVLCASTSDNTKV 732 (807)
Q Consensus 654 g~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~-~G~~S~gMll~~~~~~~~~~ 732 (807)
|+|++|++||++++|++++||+|++ +||||||++++|.+++|+|++|++++||||++| +|+ |+|||||++++++ +|
T Consensus 581 g~I~~~~~~p~~~~l~~~~vd~G~~-~~~iv~g~~~~~~~~~l~G~~v~~~~nlkp~~~~~Gv-S~gMl~~~~~~~~-~i 657 (673)
T PRK00133 581 AKIVEAEKVEGADKLLKLTLDLGEE-TRQVFSGIKSAYDPEELVGKLVVMVANLAPRKMKFGV-SEGMVLAAGPGGG-DL 657 (673)
T ss_pred eeeEeeecCCCCCccceeeEecCCc-eeEEEcCccccCCHHHHhcCeeEEEEeeccccccCCc-cceeEEEeecCCC-cE
Confidence 9999999999999999999999975 899999999999999999999999999999999 999 9999999986543 78
Q ss_pred EEEcCCCCCCCCceee
Q 003611 733 ELVEPPKSAKIGERVA 748 (807)
Q Consensus 733 ~ll~~~~~~~~G~~v~ 748 (807)
.++.++.++++|++|.
T Consensus 658 ~~l~~~~~~~~G~~~~ 673 (673)
T PRK00133 658 FLLEPDEGAKPGMRVK 673 (673)
T ss_pred EEecCCCCCCCCCcCC
Confidence 8999888899999874
No 3
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-135 Score=1148.14 Aligned_cols=543 Identities=40% Similarity=0.711 Sum_probs=510.4
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (807)
+++||||||+|||||+|||||+++ +|+|||++||+|++|++|+|+||||+||+||+.+|+++|++|+++||++++.|++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~-~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~ 82 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYT-YLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE 82 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHH-HHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999995 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhc
Q 003611 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 101 ~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (807)
+|+.|||+||.|+||++++|.+.||++|.+|+++|+||.+++++|||++|++||+|++|+|+||. ||++.++||+||+
T Consensus 83 ~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~--cg~~~arGD~Ce~ 160 (558)
T COG0143 83 LFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPK--CGGEDARGDQCEN 160 (558)
T ss_pred HHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCC--cCccccCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeee-cc
Q 003611 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-DL 259 (807)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR-~~ 259 (807)
||+.++|.+|++|+|++||.+++++.++||||+|++|+++|++|+++++. ..||.++++++.+|+++||+|||||| ++
T Consensus 161 Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~-~~~p~~~~ne~~~~i~~GL~d~~IsR~~~ 239 (558)
T COG0143 161 CGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPD-FIWPANRRNEVLNFLKEGLKDLSITRTDL 239 (558)
T ss_pred ccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCcc-ccCChHHHHHHHHHHHccCcccceecCCC
Confidence 99999999999999999999999999999999999999999999999874 46999999999999999999999999 89
Q ss_pred CCCCccCccccCCcEEEEEecccchhhhcccCCc-----hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCC
Q 003611 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (807)
Q Consensus 260 ~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~-----~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~ 334 (807)
+||||||+. ++||+||||||++||+|+++.+. .+|++||+++ +++++|||||||++||++|||||||+++++
T Consensus 240 ~WGipvP~~--p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~-~~e~vhfIGKDii~FHav~wPamL~~~~~~ 316 (558)
T COG0143 240 DWGIPVPGD--PGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPAD-DTELVHFIGKDIIRFHAVYWPAMLMAAGLP 316 (558)
T ss_pred CCCccCCCC--CCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCC-CceEEEEeccccCcchhhHHHHHHHhCCCC
Confidence 999999955 89999999999999999987664 4799999865 899999999999999999999999999986
Q ss_pred cccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHH
Q 003611 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (807)
Q Consensus 335 ~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (807)
+|+++++||||+++|+|||||+||+|+|.++++ .||+|+|||||++..|+++|++||+++|++++|++|+|++||++
T Consensus 317 --lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~-~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~ 393 (558)
T COG0143 317 --LPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLE-QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLA 393 (558)
T ss_pred --CCCEEEeeeeEEECCccccccCCcEEeHHHHHH-HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 59999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003611 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (807)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (807)
+|+++|+.| +++|.+|....... +.|+.+++.+..+...+.++|+.++|++|++.+++|++.+|+|+++++||++
T Consensus 394 ~R~~~fi~k----~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l 468 (558)
T COG0143 394 NRTLGFINK----YFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKL 468 (558)
T ss_pred HHHHHHHHh----ccCCcCCccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchh
Confidence 999999999 89999997642223 6788999999999999999999999999999999999999999999999999
Q ss_pred ccCC-hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccc-cccccccCccccccCCCcCCCCCCccCCCC
Q 003611 495 YKED-QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH-ISLCDEKGDVDRARRPWEIIPAGHKIGSPN 572 (807)
Q Consensus 495 ~k~~-~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~ 572 (807)
.|++ ++++.++++++++++|.+++||+||||.+|++||++||++...+ ..|.. .+..+..|+.+++++
T Consensus 469 ~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~ 538 (558)
T COG0143 469 AKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLEEDARNFTWLG----------ARQPLLPGHKLGPPE 538 (558)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCccccccchhhh----------hccccCCCcccCCcc
Confidence 9875 68999999999999999999999999999999999999874322 11211 123466799999999
Q ss_pred CCccCCChhHHHHHHh
Q 003611 573 PLFKELKDDEVEFFRS 588 (807)
Q Consensus 573 ~LF~ri~~~~i~~~~~ 588 (807)
+||+||+.++++++.+
T Consensus 539 ~lF~ri~~~~~~~~~~ 554 (558)
T COG0143 539 PLFPRIEEEAIEELIE 554 (558)
T ss_pred cCccccCHHHHHHHHH
Confidence 9999999999887654
No 4
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-132 Score=1176.48 Aligned_cols=635 Identities=30% Similarity=0.540 Sum_probs=559.2
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (807)
+++||||||+|||||.|||||+++ +|.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|+++|++|++.|++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~-~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYT-TIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchH-HHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999997 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhc
Q 003611 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 101 ~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (807)
+|++|||++|.|+||++++|.+.|+++|.+|+++|+||++++++|||+.|++||+|+++.
T Consensus 82 ~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-------------------- 141 (648)
T PRK12267 82 LWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-------------------- 141 (648)
T ss_pred HHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--------------------
Confidence 999999999999999999999999999999999999999999999999999999997642
Q ss_pred cCCCCCccccCC-CccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHH-HHHHcCccceeeeec
Q 003611 181 CGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH-AWLKEGLKVRCITRD 258 (807)
Q Consensus 181 cG~~l~~~el~~-p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~gl~d~~ISR~ 258 (807)
+ |+|++||++++++.++||||+|++|+++|.+|+++++.+ .||++..+.+. +||++||+||||||+
T Consensus 142 -----------~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~~l~~~l~D~~ISR~ 209 (648)
T PRK12267 142 -----------DGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDF-IQPESRKNEMINNFIKPGLEDLSISRT 209 (648)
T ss_pred -----------cCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcc-cCCHHHHHHHHHHHhhCCCCCcccCCC
Confidence 2 568889999999999999999999999999999876532 36888888888 999999999999998
Q ss_pred -cCCCCccCccccCCcEEEEEecccchhhhcccCCc----hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCC
Q 003611 259 -LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (807)
Q Consensus 259 -~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~----~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~ 333 (807)
+.||||+|++ +++|+||||||+++|+|++ +|+ ++|++|| |.| +||+||||++||+++|||||++++.
T Consensus 210 ~~~WGipvP~~--~~~v~yVWfDA~~~y~s~~-~~~~~~~~~~~~~w--p~~---~~~~GkDii~fH~i~wpa~l~~~~~ 281 (648)
T PRK12267 210 SFDWGIPVPFD--PKHVVYVWIDALLNYITAL-GYGSDDDELFKKFW--PAD---VHLVGKDILRFHAIYWPIMLMALGL 281 (648)
T ss_pred CCCcceECCCC--CCCEEEEcccchHHHHHHc-CCCCCCchHHHhhc--ccc---eEEEeeeecchhHHHHHHHHHhCCC
Confidence 5899999986 7999999999999999987 664 3689999 556 8999999999999999999999986
Q ss_pred CcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHH
Q 003611 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (807)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl 413 (807)
++|+++++||||+.+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++|+++.|.+++|++|+++|||+
T Consensus 282 --~~p~~v~~hg~l~~eg~KMSKS~GN~i~p~d~l~-~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl 358 (648)
T PRK12267 282 --PLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVD-RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNL 358 (648)
T ss_pred --CCCcEEEecceEEECCceecccCCcccCHHHHHH-HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 5899999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchh
Q 003611 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (807)
Q Consensus 414 ~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (807)
++|+..++.+ ++++.+|... ...+.|+++++.++.+.+++.++|++|+|++|++.+++|++.+|+|++..+||.
T Consensus 359 ~~R~~~~~~~----~~~~~~p~~~--~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 359 LNRTVAMINK----YFDGEIPAPG--NVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHHHHHHHH----hcCCcCCCCC--CCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999887 6777777422 234568899999999999999999999999999999999999999999999999
Q ss_pred hccC--ChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCC
Q 003611 494 LYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (807)
Q Consensus 494 l~k~--~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~ 571 (807)
+.++ +.+++.+++++++++++.+++||+||||++|++||++||++... ..|.+. ..|..++.|++++++
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~~~~-~~~~~~--------~~~~~~~~g~~~~~~ 503 (648)
T PRK12267 433 LAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLEEEL-TSWESL--------LEWGGLPAGTKVAKG 503 (648)
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCCccc-cchhhh--------hhhccccCCCccCCC
Confidence 8765 44678889999999999999999999999999999999985321 123220 113446789999999
Q ss_pred CCCccCCChh-HHHHHHhhhcCChhhHHHHHHHHHHHHHHHhhhccccCCCCccccccccccccCCCCCCCCcC-Cceee
Q 003611 572 NPLFKELKDD-EVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEI-SIARL 649 (807)
Q Consensus 572 ~~LF~ri~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 649 (807)
++||+||+++ +++.. +++++.+ ++ ++ + +++ + +++.+++..+ +|+++
T Consensus 504 ~~lf~k~~~~~~~~~~-~~~~~~~----------~~------~~----~--~~~--~-------~~~~~~~~~~~~f~~~ 551 (648)
T PRK12267 504 EPLFPRIDVEEEIAYI-KEQMEGS----------AP------KE----P--EEK--E-------KKPEKPEITIDDFDKV 551 (648)
T ss_pred CCCcCCCCcHHHHHHH-HHhhhhh----------hc------cc----c--ccc--c-------cCcccCccCHhhhhhh
Confidence 9999999975 44332 2221100 00 00 0 000 0 0011122344 79999
Q ss_pred eEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeeeecCCC
Q 003611 650 DIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDN 729 (807)
Q Consensus 650 ~~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~~~~~~ 729 (807)
|||||+|++|++||++|+|++++||+|++++||||||+++++.+++|+|++|++++||+|++|||++|+|||||+++ ++
T Consensus 552 d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~gMl~s~~~-~~ 630 (648)
T PRK12267 552 ELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLKPAKLMGEESQGMILAAED-DG 630 (648)
T ss_pred ceeEEEEEeeccCCCCCccceEEEEeCCCceEEEEeCCcccCCHhHhCCCeEEEEEeecccccCCcccceEEEEecc-CC
Confidence 99999999999999999999999999977789999999999999999999999999999999999999999999987 32
Q ss_pred CeEEEEcCCCCCCCCceee
Q 003611 730 TKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 730 ~~~~ll~~~~~~~~G~~v~ 748 (807)
.+.|+.+|.++++|++|.
T Consensus 631 -~~~l~~~~~~~~~G~~~~ 648 (648)
T PRK12267 631 -KLTLLTVDKEVPNGSKVK 648 (648)
T ss_pred -eEEEEeCCCCCCCcCCCC
Confidence 578999999999999874
No 5
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-118 Score=924.65 Aligned_cols=562 Identities=62% Similarity=1.106 Sum_probs=536.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHH
Q 003611 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEIC 91 (807)
Q Consensus 12 ~~~~~~~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~ 91 (807)
+.+..|.++++.++||+++||+|..||+|++.+.++.|||++||.+.+|++..|+|||||+|++++.+|.++|++|+++|
T Consensus 4 ~~~ilp~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elc 83 (567)
T KOG1247|consen 4 KDPILPAPNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELC 83 (567)
T ss_pred CCCcccCCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHH
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCC
Q 003611 92 DKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYE 171 (807)
Q Consensus 92 ~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~ 171 (807)
++|+..|+..+++++|++|.|.|||.+.+.+.+|.+|.+|+++|+..+.+..+.||..|++||+|++|+|+||. |+++
T Consensus 84 dKyh~ihk~vy~Wf~IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~--C~yd 161 (567)
T KOG1247|consen 84 DKYHGIHKVVYDWFKIDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPF--CGYD 161 (567)
T ss_pred HhcchhHHHHHHhhcccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCC--CCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred CCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCcc
Q 003611 172 SARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251 (807)
Q Consensus 172 ~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (807)
+++||||++||+++++.+|.+|+|..|...++++.+.|.||.|+++++++.+|++.......|.+|+.+++++||++||.
T Consensus 162 ~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~ 241 (567)
T KOG1247|consen 162 DARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLK 241 (567)
T ss_pred cccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999999999999999998776678999999999999999999
Q ss_pred ceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhC
Q 003611 252 VRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (807)
Q Consensus 252 d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~ 331 (807)
++||||++.||+|||.++++++|+||||||+|||+|.+++|.++|++||.+|.++++++|+|||++.||+++||++++++
T Consensus 242 pRCiTRDLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt 321 (567)
T KOG1247|consen 242 PRCITRDLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGT 321 (567)
T ss_pred ccccccccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHH
Q 003611 332 GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLG 411 (807)
Q Consensus 332 ~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~ 411 (807)
+.+|++.+++.+.+||+.+..|||||+|.+|+..++.+.+++++++||||++.+|+++|..|||++|..++|++|+++||
T Consensus 322 ~en~t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLG 401 (567)
T KOG1247|consen 322 EENYTVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLG 401 (567)
T ss_pred CCCchhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Q 003611 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491 (807)
Q Consensus 412 Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~p 491 (807)
||++|++.|+.. .++|.+|... . ..-++.+++.++++..++.++||.-++++|++.+|++.+++|.|+|+.+.
T Consensus 402 NFvNR~l~fv~~----~~~g~Vp~~~-~--~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~ 474 (567)
T KOG1247|consen 402 NFVNRVLKFVAA----KYNGVVPEME-L--TSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTD 474 (567)
T ss_pred HHHHHHHHHHHH----hhCCccccee-e--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccc
Confidence 999999999998 7999999753 1 12267899999999999999999999999999999999999999999999
Q ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCC
Q 003611 492 WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSP 571 (807)
Q Consensus 492 w~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~ 571 (807)
|++...+++++.+++.+.++++..++.||+||||.++.+|+.+|+++... +. ...+-.|++||+||+|
T Consensus 475 ~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~~~---~~---------~~~~~~l~~gH~ig~~ 542 (567)
T KOG1247|consen 475 NKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPETL---FP---------DRFICRLLAGHRIGTP 542 (567)
T ss_pred cchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCcccc---CC---------CccceeecCcCccCCc
Confidence 99998888999999999999999999999999999999999999998432 11 1234568899999999
Q ss_pred CCCccCCChhHHHHHHhhhcCCh
Q 003611 572 NPLFKELKDDEVEFFRSKFAGSQ 594 (807)
Q Consensus 572 ~~LF~ri~~~~i~~~~~~~~~~~ 594 (807)
+|||+|++.++|++|+++|+|.+
T Consensus 543 ~pLFq~l~~~qiee~r~k~gg~q 565 (567)
T KOG1247|consen 543 SPLFQKLDEDQIEEWRAKFGGQQ 565 (567)
T ss_pred cHHHHhcCHHHHHHHHHhhcCCC
Confidence 99999999999999999998765
No 6
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-109 Score=964.93 Aligned_cols=547 Identities=44% Similarity=0.820 Sum_probs=496.3
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (807)
+++|+||+|||||||.|||||+++.|+.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|.++|+++++.|++
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999965889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhc
Q 003611 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 101 ~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (807)
+|++|||++|.|+||++++|.+.++++|.+|+++|+||++.+.+|||+.|++||+|++|.|+||. |++.+++|++||.
T Consensus 82 ~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPY--CGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCC--CCCcccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9998999999999
Q ss_pred cCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccC
Q 003611 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260 (807)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~ 260 (807)
||+.+++.+|++|+|++||++++++.++||||+|++|++.|.+++++. ..||+...+.+.+||+++++||||||++.
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~---~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~ 236 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESS---GDWPPNVLNFTLNWLKEGLKPRAITRDLD 236 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhc---cCCCHHHHHHHHHHHhCCCCCcCceeeCC
Confidence 999999999999999999999999999999999999999999999853 24889999999999998899999999999
Q ss_pred CCCccCccccCCcEEEEEecccchhhhcccCC------chhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCC
Q 003611 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN 334 (807)
Q Consensus 261 WGipvP~~~~~~~viyVWfDA~~~yis~~~~~------~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~ 334 (807)
||+|+|+...+++++||||||+++|++....+ .++|+.||.+ .+...+|++|+||++||+++||+++++.+.+
T Consensus 237 WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~d-s~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~ 315 (556)
T PRK12268 237 WGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLD-PETKSYYFIGKDNIPFHSIIWPAMLLGSGEP 315 (556)
T ss_pred CCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCC-CCCeEEEEEeeccCcchHHHHHHHHHhcCCC
Confidence 99999955557899999999999999764333 2358889942 3455699999999999999999999999855
Q ss_pred cccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHH
Q 003611 335 WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (807)
Q Consensus 335 ~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (807)
+.+|+.+++||||+.+|+|||||+||+|+|.|+++ .||+|++|||+++.++.++|++|+++.+....|++++++++|++
T Consensus 316 ~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~-~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~ 394 (556)
T PRK12268 316 LKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALE-RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLV 394 (556)
T ss_pred CCCCCEeeccCCEEECCeeeccCCCcccCHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHH
Confidence 56899999999999999999999999999999999 69999999999998899999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 003611 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (807)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l 494 (807)
+|+..++.+ ..++.+|. ....+.|+++++.++.+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.+
T Consensus 395 ~r~~~~~~~----~~~~~~~~---~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~ 467 (556)
T PRK12268 395 NRVLSFIEK----YFGGIVPP---GELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKL 467 (556)
T ss_pred HHHHHHHHH----hcCCcCCC---CcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 999998876 44444442 12345688999999999999999999999999999999999999999999999998
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCCCCC
Q 003611 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (807)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (807)
.+++.+.+..++++++++++.+++||+||||++|++||++||.+......|.. +..++.|++|+.+++|
T Consensus 468 ~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~~~~~~~~w~~-----------~~~~~~g~~i~~~~~l 536 (556)
T PRK12268 468 AKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGGENIEKLTWES-----------LKPLLPGHPINKPEPL 536 (556)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCCCCCcccchhh-----------hcCCCCCCCCCCCCCC
Confidence 76666667888999999999999999999999999999999973211112322 1136679999999999
Q ss_pred ccCCChhHHHHHHhhhcC
Q 003611 575 FKELKDDEVEFFRSKFAG 592 (807)
Q Consensus 575 F~ri~~~~i~~~~~~~~~ 592 (807)
|+|+++++++++++.++|
T Consensus 537 f~r~~~~~~~~~~~~~~~ 554 (556)
T PRK12268 537 FKKIDDEQIEEELERLGG 554 (556)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 999999999998887754
No 7
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.6e-108 Score=949.71 Aligned_cols=508 Identities=25% Similarity=0.472 Sum_probs=452.4
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (807)
+++|+||+|||||||.||||||++ ++.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|+++|++|++.|++
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~-~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~ 146 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYT-TIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRT 146 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHH-HHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456999999999999999999997 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhc
Q 003611 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 101 ~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (807)
+|++|||++|.|+||+++.|.+.||++|.+|+++|+||++.+++|||++|++|+++.++..
T Consensus 147 ~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~------------------- 207 (616)
T PLN02224 147 LWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE------------------- 207 (616)
T ss_pred HHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC-------------------
Confidence 9999999999999999999999999999999999999999999999999999988754421
Q ss_pred cCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeec-c
Q 003611 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD-L 259 (807)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~-~ 259 (807)
++.|..||+++++++++||||+|++|++.|++|+++++.+ .+|...++++.+||++||+||||||+ .
T Consensus 208 -----------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~-~~p~~~~~~~~~~l~~gL~d~~ISR~~~ 275 (616)
T PLN02224 208 -----------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRF-VQPSYRLNEVQSWIKSGLRDFSISRALV 275 (616)
T ss_pred -----------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHhcCCCCccccCCCC
Confidence 2458889999999999999999999999999999887643 25777888999999999999999998 4
Q ss_pred CCCCccCccccCCcEEEEEecccchhhhcccCCchh------HhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCC
Q 003611 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (807)
Q Consensus 260 ~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~------~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~ 333 (807)
.||||||.+ ++|||||||||++||+|++..+.++ +..|| |.+ +||+||||++||+++|||||+++|+
T Consensus 276 ~WGIpvP~~--~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w--~~~---v~~iGKDii~fH~i~wpa~l~~~g~ 348 (616)
T PLN02224 276 DWGIPVPDD--DKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGW--PAS---LHLIGKDILRFHAVYWPAMLMSAGL 348 (616)
T ss_pred CCceECCCC--CCcEEEEehhhHHHHHHHhcccccccccchhhccCC--Ccc---eEEEeecccccHHHHHHHHHHHCCC
Confidence 899999977 7999999999999999987554321 23467 445 8999999999999999999999886
Q ss_pred CcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHH
Q 003611 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (807)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl 413 (807)
++|+.+++||||+++|+|||||+||+|+|.++++ .||+|++||||++.+|+.+|++|+++.|.+++|++|++++||+
T Consensus 349 --~~P~~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~-~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNl 425 (616)
T PLN02224 349 --ELPKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQ-KFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNL 425 (616)
T ss_pred --CCCcEEEecccEecCCccccccCCccCCHHHHHH-HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchh
Q 003611 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (807)
Q Consensus 414 ~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (807)
++|++.++.+ ++++.+|... .....+.++++.++.+.+++.++|++|++++|++.+++|++.+|+|++..+||+
T Consensus 426 l~R~l~~~~k----~~~~~~~~~~--~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 426 LNRTLGLLKK----NCESTLVEDS--TVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHHHH----hcCCcCCCcc--ccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 9999999988 6777766431 112336789999999999999999999999999999999999999999999999
Q ss_pred hccCC---hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccc--cccccccCccccccCCCcCCCCCCcc
Q 003611 494 LYKED---QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKH--ISLCDEKGDVDRARRPWEIIPAGHKI 568 (807)
Q Consensus 494 l~k~~---~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~i 568 (807)
+.+++ .+++.+++++++++++.+++||+||||++|++||++||.+.... ..|.+ ..++.++.|+.+
T Consensus 500 l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~~~~~~~~~~~~---------~~~~~~~~g~~i 570 (616)
T PLN02224 500 LFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYSEDQFNSITWSD---------TKWGGLKGGQVM 570 (616)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCCcccccccchhh---------hccccCCCCCCC
Confidence 88753 24567889999999999999999999999999999999863211 12221 113346679999
Q ss_pred CCCCCCccCCChhHHHH
Q 003611 569 GSPNPLFKELKDDEVEF 585 (807)
Q Consensus 569 ~~~~~LF~ri~~~~i~~ 585 (807)
+++++||+||+.++++.
T Consensus 571 ~~~~~Lf~ri~~~~~~~ 587 (616)
T PLN02224 571 EQASPVFARIELNPEKE 587 (616)
T ss_pred CCCCCCCCCcCcchHHH
Confidence 99999999999766544
No 8
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5e-108 Score=952.67 Aligned_cols=525 Identities=42% Similarity=0.787 Sum_probs=485.1
Q ss_pred EEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003611 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (807)
Q Consensus 24 ~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (807)
|+||+|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++.+.+.|+++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~-~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYT-TILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999997 6889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCC
Q 003611 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (807)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~ 183 (807)
+|||++|.|++|+++.|...++++|.+|+++|+||++.+.+|||+.|++|++|++|+|.||. |++++++|++||.||+
T Consensus 80 ~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~--c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPK--CGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCC--CCCcccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccC-CC
Q 003611 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK-WG 262 (807)
Q Consensus 184 ~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~-WG 262 (807)
.+++.++++|+|++||++++.+.++||||+|++|+++|++++++++....|+++..+.+.+||.++++||||||++. ||
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WG 237 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWG 237 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCC
Confidence 99999999999999999999999999999999999999999997665556888888899999999999999999999 99
Q ss_pred CccCccccCCcEEEEEecccchhhhcccCCc----hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccC
Q 003611 263 VPVPLERFKEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLM 338 (807)
Q Consensus 263 ipvP~~~~~~~viyVWfDA~~~yis~~~~~~----~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p 338 (807)
+|+|+| +++++||||||+++|++.+ ++. .+|++||+.+.|++++|++||||++||+++|||||++++. ++|
T Consensus 238 ipvP~~--~~~~~yvW~da~~~y~~~~-~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~--~~~ 312 (530)
T TIGR00398 238 IPVPND--PNKVVYVWFDALIGYISSL-GILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGL--PLP 312 (530)
T ss_pred eeCCCC--CCcEEEEeecchHHhHhhh-ccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCC--CCC
Confidence 999988 7899999999999999865 332 3688999765578899999999999999999999999985 589
Q ss_pred eEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHH
Q 003611 339 KTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVL 418 (807)
Q Consensus 339 ~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~ 418 (807)
+.+++|||++.+|+|||||+||+|+|.|+++ .||+|++||||++.++.++|++|+++.+.++.|++++++++|+++|++
T Consensus 313 ~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~-~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~ 391 (530)
T TIGR00398 313 TQVFSHGYLTVEGGKMSKSLGNVVDPSDLLA-RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTL 391 (530)
T ss_pred CEEEeeccEEECCceecccCCceecHHHHHH-HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 699999999999988899999999999999999999999999999999
Q ss_pred HhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhhccCC
Q 003611 419 SFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKED 498 (807)
Q Consensus 419 ~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~ 498 (807)
+++.+ ++++.+|... ...+.|+++++.++.+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.+.+++
T Consensus 392 ~~~~~----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~ 465 (530)
T TIGR00398 392 GFIKK----YFNGVLPSED--ITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQS 465 (530)
T ss_pred HHHHH----hcCCcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCCh
Confidence 99887 4555555321 23456889999999999999999999999999999999999999999999999998654
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCCCCCccCC
Q 003611 499 QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL 578 (807)
Q Consensus 499 ~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~LF~ri 578 (807)
. ++.++++++.++++.++++|+||||++|++||++||.+.. |.. .. .++.|+.++++.+||+||
T Consensus 466 ~-~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~----~~~----------~~-~~~~~~~i~~~~~lf~ki 529 (530)
T TIGR00398 466 P-RLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFELE----WDF----------KL-KLLEGHKLNKAEPLFSKI 529 (530)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCChh----hhh----------hc-CCCCCCCCCCCCCCCCCC
Confidence 4 6778899999999999999999999999999999998632 101 01 245699999999999998
Q ss_pred C
Q 003611 579 K 579 (807)
Q Consensus 579 ~ 579 (807)
+
T Consensus 530 ~ 530 (530)
T TIGR00398 530 E 530 (530)
T ss_pred C
Confidence 6
No 9
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-107 Score=843.96 Aligned_cols=479 Identities=28% Similarity=0.472 Sum_probs=428.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003611 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (807)
Q Consensus 20 ~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (807)
+.+++++|||++|||..|||||+|+. |.+|+++||+|++|..|+|.+||||||+||+.+|+.+|.+|.++||+.++.|+
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~-llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~ 115 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYST-LLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFR 115 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHH-HHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHH
Confidence 44589999999999999999999985 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccccc-ccCCCCCCCCCCCCCcch
Q 003611 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQC 178 (807)
Q Consensus 100 ~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~-g~cp~~~c~~~~~~g~~c 178 (807)
++++.+||.++.|+|||+|+|+..||+||..+.++|+||.+.+++|||++||+|++++.|. ..||.
T Consensus 116 qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~------------- 182 (578)
T KOG0436|consen 116 QLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPP------------- 182 (578)
T ss_pred HHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999763 44543
Q ss_pred hccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeec
Q 003611 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (807)
Q Consensus 179 e~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (807)
|+ ++...+|+++.++++++|||+||+|+..|.+|++++|.+. .|+...+.+.+||+.||+|++|||.
T Consensus 183 ---gk---------~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fv-qPs~~~~qVl~~lktglpDlSISRp 249 (578)
T KOG0436|consen 183 ---GK---------VVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFV-QPSYFHNQVLSWLKTGLPDLSISRP 249 (578)
T ss_pred ---Cc---------eeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCcc-CchHHHHHHHHHHHcCCCcccccCh
Confidence 11 2345689999999999999999999999999999999764 4666778899999999999999994
Q ss_pred ---cCCCCccCccccCCcEEEEEecccchhhhcccCCch-------hHhhhcCCCCCcceEEEEEeccccchhchHHHHh
Q 003611 259 ---LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN-------EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTL 328 (807)
Q Consensus 259 ---~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~-------~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l 328 (807)
+.||||+|++ +.|+|||||||++||||.. +|+. .+..+|| +. +|+|||||++||++||||||
T Consensus 250 sarl~WGIPvP~d--dsQtIYVWfDAL~nYiSvi-g~~~~~~N~k~~ls~~wP--at---~HvIGKDIlrFHavYWPafL 321 (578)
T KOG0436|consen 250 SARLDWGIPVPGD--DSQTIYVWFDALLNYISVI-GYPNKQQNLKTALSFGWP--AT---LHVIGKDILRFHAVYWPAFL 321 (578)
T ss_pred hhhcccCCCCCCC--CcceEEEeHHHHhhHHHhh-cCCchhccccceeecCCC--ce---eeehhhhhhhhhhhhhHHHH
Confidence 7899999988 7999999999999999985 6652 3566884 44 89999999999999999999
Q ss_pred hhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHH
Q 003611 329 LGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (807)
Q Consensus 329 ~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~ 408 (807)
||+|++ +|+.|++||||+.+|.|||||+||+|+|.++++ +||+|++||||++++..+.|.||+.+.+....|++|++
T Consensus 322 maAGlp--lP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~-kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~ 398 (578)
T KOG0436|consen 322 MAAGLP--LPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQ-KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLAN 398 (578)
T ss_pred HhcCCC--CccEEEEeeeeeecceecchhhccccCHHHHHH-HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHH
Confidence 999995 999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 003611 409 NLGNFINRVLS--FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (807)
Q Consensus 409 ~l~Nl~~R~~~--~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi 486 (807)
++||+++|+++ +..+. ...+.+-.. ......+..+...+.++.+.+.+.++.|.+.+|++.++++++.+|.|+
T Consensus 399 ~lG~LlnRc~gkkln~sn---~e~~l~~~s--~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlv 473 (578)
T KOG0436|consen 399 TLGNLLNRCLGKKLNISN---CESTLVVDS--PTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLV 473 (578)
T ss_pred HHHHHHHHHhhcccChhc---cccccccCC--cchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhhh
Confidence 99999999988 22221 011111111 112233456888999999999999999999999999999999999999
Q ss_pred HhhcchhhccCC---hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCcc
Q 003611 487 QESQFWKLYKED---QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEK 541 (807)
Q Consensus 487 ~~~~pw~l~k~~---~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~ 541 (807)
+..+||++.++. .+.+..++..+++++|++++||+||||.++.+++++||++...
T Consensus 474 q~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvsk~q 531 (578)
T KOG0436|consen 474 QQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVSKDQ 531 (578)
T ss_pred hhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCChhh
Confidence 999999998753 3567788899999999999999999999999999999998654
No 10
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=2.2e-101 Score=855.00 Aligned_cols=385 Identities=41% Similarity=0.817 Sum_probs=342.6
Q ss_pred EEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003611 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (807)
Q Consensus 24 ~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (807)
||||||+|||||.|||||++ ++|.||+++||+|++|++|+|++|+|+||+||+.+|+++|++|+++|+++++.|+++|+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~-~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLY-PYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHH-HHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhH-HHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 58999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCC
Q 003611 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGK 183 (807)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~ 183 (807)
+|||++|.|+||++++|.+.|+++|++|+++|+||++++++|||+.|++|++|++|+|+||. |++..++|++|+.||+
T Consensus 80 ~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~--C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 80 ALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPY--CGSDKARGDQCENCGR 157 (391)
T ss_dssp HTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETT--T--SSCTTTEETTTSS
T ss_pred HcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccC--cCccccCCCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCC
Q 003611 184 LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263 (807)
Q Consensus 184 ~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGi 263 (807)
.+++.+|++|+|..||++++++++++|||+|++|+++|.+|+++.+.+ |+++.++.+.+||+++|+||||||+.+|||
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI 235 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF--PPPRVREIVRNWLKEGLPDLSISRPLDWGI 235 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS--SHHHHHHHHHHHHHT----EE-ECTTSSSE
T ss_pred CcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC--CChhHHHHHHHHhhcccCceeeecCCCCcc
Confidence 999999999999999999999999999999999999999999987654 899999999999999999999999999999
Q ss_pred ccCccccCCcEEEEEecccchhhhcccCCc------hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCccc
Q 003611 264 PVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337 (807)
Q Consensus 264 pvP~~~~~~~viyVWfDA~~~yis~~~~~~------~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~ 337 (807)
|+|++ ++|||||||||++||++.+..+. ..|.+||.++.+++++||+||||++||+++|||||+|+++ ++
T Consensus 236 ~vP~~--~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~--~l 311 (391)
T PF09334_consen 236 PVPGD--PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL--PL 311 (391)
T ss_dssp EETTE--EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB----
T ss_pred eeecc--CCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccC--CC
Confidence 99955 89999999999999999875543 3689999545788999999999999999999999999876 58
Q ss_pred CeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHH
Q 003611 338 MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRV 417 (807)
Q Consensus 338 p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~ 417 (807)
|+++++||||+++|+|||||+||+|+|.|+++ .|++|++||||++.+|+.+|.+|+++.|.+++|++|++++||+++|+
T Consensus 312 P~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~-~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 312 PRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLE-EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp -SEEEEE--EEETTCCEETTTTESSBHHHHHH-HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CCEEEeeeeEEECCeeccccCCcccCHHHHHH-hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 99999999999999999999999999999999 59999999999999999999999999999999999999999999998
Q ss_pred H
Q 003611 418 L 418 (807)
Q Consensus 418 ~ 418 (807)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 5
No 11
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-95 Score=845.49 Aligned_cols=502 Identities=30% Similarity=0.552 Sum_probs=450.3
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (807)
++|+||+|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++|++|++.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~-~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYT-TLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHH-HHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999997 68899999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhcc
Q 003611 102 YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENC 181 (807)
Q Consensus 102 ~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~c 181 (807)
|++|||++|.|++|+++.|...|+++|.+|+++|+||++.+.+|||++|++|++++++...
T Consensus 80 l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~------------------- 140 (511)
T PRK11893 80 WEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIED------------------- 140 (511)
T ss_pred HHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCC-------------------
Confidence 9999999999999999999999999999999999999999999999999999998765310
Q ss_pred CCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeee-ccC
Q 003611 182 GKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR-DLK 260 (807)
Q Consensus 182 G~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR-~~~ 260 (807)
.|+|++||++++.+.++||||+|+.|++.|.+++++++.. .++...++.+.+|++++++|||||| ++.
T Consensus 141 ----------~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~D~~isR~~~~ 209 (511)
T PRK11893 141 ----------GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDF-IQPASRRNEVISFVKSGLKDLSISRTNFD 209 (511)
T ss_pred ----------CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCc-cCCHHHHHHHHHHHHCCCCCcccCCCCCC
Confidence 1679999999999999999999999999999999875321 3577778888999999999999999 899
Q ss_pred CCCccCccccCCcEEEEEecccchhhhcccCCc-------hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCC
Q 003611 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT-------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333 (807)
Q Consensus 261 WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~-------~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~ 333 (807)
||+|+|++ +++++||||||+++|++.. +++ ++|..|| |.| +|++|+||++||+++|||++++++.
T Consensus 210 WGipiP~~--~~~~~~vWfda~~~y~s~~-~~p~~~~~~~~~~~~~~--~~D---~~~~G~D~~~~h~~~~~a~~~a~~~ 281 (511)
T PRK11893 210 WGIPVPGD--PKHVIYVWFDALTNYLTAL-GYPDDEELLAELFNKYW--PAD---VHLIGKDILRFHAVYWPAFLMAAGL 281 (511)
T ss_pred CCccCCCC--CCceEEEEecCcHHHHhHh-ccccccccchhHHHhcC--CCc---ceEecccccccchhHHHHHHHhCCC
Confidence 99999986 7899999999999999875 332 2588899 457 7999999999999999999999865
Q ss_pred CcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHH
Q 003611 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNF 413 (807)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl 413 (807)
++|+++++||||+.+|+|||||+||+|++.|+++ .||+|++||||++.+++++|++|+++.+..+.|+++.+.++|+
T Consensus 282 --~~p~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~-~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~ 358 (511)
T PRK11893 282 --PLPKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVD-EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNL 358 (511)
T ss_pred --CCCCEEEeeccEEECCeeecccCCcEEcHHHHHH-HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999 6999999999999889999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchh
Q 003611 414 INRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493 (807)
Q Consensus 414 ~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~ 493 (807)
++|+.+++.+ .+++.+|... ...+.|+++++.++.+.+.+.++|++|+++.|++.+++|++.+|+|++..+||.
T Consensus 359 ~~r~~~~~~~----~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~~pw~ 432 (511)
T PRK11893 359 AQRTLSMIAK----NFDGKVPEPG--ALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQAPWS 432 (511)
T ss_pred HHHHHHHHHH----hcCCCCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCChh
Confidence 9999998876 3455555321 124467899999999999999999999999999999999999999999999998
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCCccccccccccCccccccCCCcCCCCCCccCCCCC
Q 003611 494 LYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNP 573 (807)
Q Consensus 494 l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~ 573 (807)
+.+++.+++.+++++++++++.+++||+||||++|++||++||.+......|.+ . .+..++.|+.++.+++
T Consensus 433 ~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~ 503 (511)
T PRK11893 433 LAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVEEDENRDFAA-------L--SWGRLAPGTTLPKPEP 503 (511)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCCcccccchhh-------h--hcccCCCCCCCCCCCC
Confidence 877667788999999999999999999999999999999999975332111211 0 1334667999999999
Q ss_pred CccCCCh
Q 003611 574 LFKELKD 580 (807)
Q Consensus 574 LF~ri~~ 580 (807)
||+||++
T Consensus 504 lf~~~~~ 510 (511)
T PRK11893 504 IFPRLEE 510 (511)
T ss_pred CccCCCC
Confidence 9999975
No 12
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=5.4e-86 Score=803.77 Aligned_cols=506 Identities=19% Similarity=0.258 Sum_probs=425.9
Q ss_pred CCCCCCCCCC--CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---
Q 003611 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED--- 83 (807)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~--- 83 (807)
|.....|.+. .++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+..+++.
T Consensus 18 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~-~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~ 96 (861)
T TIGR00422 18 WEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNW-SIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGA 96 (861)
T ss_pred HHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHH-HHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcc
Confidence 5556666553 356789999999999999999999985 5699999999999999999999999999999887753
Q ss_pred -CCCH------------HHHHHHHHHHHHHHHhhcCccccc--ccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecC
Q 003611 84 -NCSP------------KEICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (807)
Q Consensus 84 -g~~p------------~e~~~~~~~~~~~~~~~lgI~~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (807)
|+++ .++++++.+.++++|++||+++|. .+.|+++.|.+.|+++|.+|+++|+||++.+.++|||
T Consensus 97 ~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp 176 (861)
T TIGR00422 97 EGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDP 176 (861)
T ss_pred cCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCC
Confidence 6666 467999999999999999999983 3569999999999999999999999999999999999
Q ss_pred CCCccccccccc--------------------------------------------------------------------
Q 003611 149 TCKRFLADRLVE-------------------------------------------------------------------- 160 (807)
Q Consensus 149 ~~~~~l~d~~v~-------------------------------------------------------------------- 160 (807)
.|+|+|+|.+|+
T Consensus 177 ~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii 256 (861)
T TIGR00422 177 KLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPII 256 (861)
T ss_pred CCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceee
Confidence 999999998642
Q ss_pred ---------c-----cCCCCCCCC----------------CCCCCcchhccCCC------------------------CC
Q 003611 161 ---------G-----TCPFEGCNY----------------ESARGDQCENCGKL------------------------LN 186 (807)
Q Consensus 161 ---------g-----~cp~~~c~~----------------~~~~g~~ce~cG~~------------------------l~ 186 (807)
| .||. |+. -+.+|..|+.||.. ..
T Consensus 257 ~~~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~ 334 (861)
T TIGR00422 257 ADEYVDMEFGTGAVKVTPA--HDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIE 334 (861)
T ss_pred ecCCCCcccCCCceEecCC--CChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeee
Confidence 1 1333 221 13467788888764 12
Q ss_pred ccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccC
Q 003611 187 ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVP 266 (807)
Q Consensus 187 ~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP 266 (807)
+.+...|+|+|||++++.+.++||||+++++++++++++++.... .+|++..+.+.+||++ ++|||||||+.||+|||
T Consensus 335 ~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~-~~P~~~~~~~~~wl~~-l~DW~ISRq~~WG~piP 412 (861)
T TIGR00422 335 PHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIK-FVPKRMEKRYLNWLRN-IKDWCISRQLIWGHRIP 412 (861)
T ss_pred eeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeE-EEChHHHHHHHHHHhc-cccceeeeecccCCcce
Confidence 234467999999999999999999999999999999999854321 2577888899999986 99999999999999999
Q ss_pred ccccC-----------------------------CcEEEEEecccchhhhcccCCch---hHhhhcCCCCCcceEEEEEe
Q 003611 267 LERFK-----------------------------EKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGK 314 (807)
Q Consensus 267 ~~~~~-----------------------------~~viyVWfDA~~~yis~~~~~~~---~~~~~W~~p~d~~~ih~iGk 314 (807)
.|.++ .+|+||||||.++|++.. +|+. +|+.|| |.| +|++|+
T Consensus 413 ~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~-g~p~~~~~~~~~~--P~d---~~~~G~ 486 (861)
T TIGR00422 413 VWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTL-GWPDETKDLKKFY--PTD---LLVTGY 486 (861)
T ss_pred EEEECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHh-CCCCChHHHhhcC--Ccc---eeecch
Confidence 87542 368899999999999865 6753 588899 567 899999
Q ss_pred ccccchhchHHHHhhhCCCCcccCeEEEeeceeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003611 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (807)
Q Consensus 315 Dii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~F 393 (807)
||++||..+|+++.+++... .|++.+++|||++. +|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|
T Consensus 487 Dii~fw~~~~~~~~~~~~~~-~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~~~~~~d~~f 564 (861)
T TIGR00422 487 DIIFFWVARMIFRSLALTGQ-VPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIE-KYGADALRFTLASLVTPGDDINF 564 (861)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCcee
Confidence 99999999999998887543 35599999999995 99999999999999999999 69999999999998888999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 003611 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLK 473 (807)
Q Consensus 394 s~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~ 473 (807)
+++.+... .+++++||| +.|...+..+ .+++ ++... ......|+|+++.++.+.+++.++|++|+|++|++
T Consensus 565 ~~~~~~~~--~~~~nkl~N-~~rf~~~~~~----~~~~-~~~~~-~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~ 635 (861)
T TIGR00422 565 DWKRVESA--RNFLNKLWN-ASRFVLMNLS----DDLE-LSGGE-EKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAK 635 (861)
T ss_pred cHHHHHHH--HHHHHHHHH-HHHHHHhccc----cccc-ccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999876 559999999 5555544322 2222 22111 12345799999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 474 TAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 474 ~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
.+++|+ ..+|+|++..+||...+ +.++...++.++.++++.+++||+||||++|++||++|+.
T Consensus 636 ~l~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~ 700 (861)
T TIGR00422 636 ALYEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKE 700 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcc
Confidence 999997 67999999999998643 3445667888999999999999999999999999999985
No 13
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.5e-83 Score=783.18 Aligned_cols=506 Identities=19% Similarity=0.245 Sum_probs=411.3
Q ss_pred CCCCCCCCCCC---CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH--
Q 003611 8 NPAAPPPKLPI---PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-- 82 (807)
Q Consensus 8 ~~~~~~~~~~~---~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~-- 82 (807)
.|.....|.+. .++++|+|+.|||||||.|||||+++.+ .+|+++||+||+||+|+|++|||+||++++..+++
T Consensus 31 ~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~-~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l 109 (1052)
T PRK14900 31 FWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTAT-LQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKEL 109 (1052)
T ss_pred HHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhH-HHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHh
Confidence 34455555543 3567899999999999999999999965 59999999999999999999999999999987765
Q ss_pred ---cCCCH------------HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeee
Q 003611 83 ---DNCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145 (807)
Q Consensus 83 ---~g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~ 145 (807)
.|+++ .+|++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++
T Consensus 110 ~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~ 189 (1052)
T PRK14900 110 KKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLIN 189 (1052)
T ss_pred hhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceec
Confidence 24433 34789999999999999999998 44679999999999999999999999999999999
Q ss_pred ecCCCCcccccccccccC--------------------------CCC--CCCC---------------------------
Q 003611 146 YCDTCKRFLADRLVEGTC--------------------------PFE--GCNY--------------------------- 170 (807)
Q Consensus 146 y~~~~~~~l~d~~v~g~c--------------------------p~~--~c~~--------------------------- 170 (807)
|||.|+++|+|.+|+... |.. +|.+
T Consensus 190 wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~i 269 (1052)
T PRK14900 190 WCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTF 269 (1052)
T ss_pred cCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCee
Confidence 999999999999886421 110 0000
Q ss_pred ----CC-----CCCc---------------------------------chhccCC----------------------CCC
Q 003611 171 ----ES-----ARGD---------------------------------QCENCGK----------------------LLN 186 (807)
Q Consensus 171 ----~~-----~~g~---------------------------------~ce~cG~----------------------~l~ 186 (807)
+. .+|. ..+.+|. ++.
T Consensus 270 pIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~ 349 (1052)
T PRK14900 270 PIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRG 349 (1052)
T ss_pred EEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeec
Confidence 00 0111 1111111 000
Q ss_pred --ccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCc
Q 003611 187 --ATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVP 264 (807)
Q Consensus 187 --~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGip 264 (807)
..+...|+||||+++++.+.++||||+|+.|++++++++++... ..+|.+..+.+.+||. +|+|||||||+.||+|
T Consensus 350 ~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~P 427 (1052)
T PRK14900 350 AKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT-RFIPEQWTNTYMAWMR-NIHDWCISRQLWWGHQ 427 (1052)
T ss_pred ceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEeecCCCce
Confidence 11224689999999999999999999999999999999986432 1367788888999998 5999999999999999
Q ss_pred cCcccc-------------------------CCcEEEEEecccchhhhcccCCch---hHhhhcCCCCCcceEEEEEecc
Q 003611 265 VPLERF-------------------------KEKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDN 316 (807)
Q Consensus 265 vP~~~~-------------------------~~~viyVWfDA~~~yis~~~~~~~---~~~~~W~~p~d~~~ih~iGkDi 316 (807)
||.|.+ +.+|+||||||+++|++.+ +|++ +|+.|| |.| +|++|+||
T Consensus 428 IP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~-g~p~~~~~~~~~~--P~d---~~~~G~Di 501 (1052)
T PRK14900 428 IPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTM-GWPEQTDTLRTFY--PTS---VMETGHDI 501 (1052)
T ss_pred eCeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHH-cCCCchHHHHhhC--Cch---hhcccccH
Confidence 999843 3489999999999999875 6753 588899 567 79999999
Q ss_pred ccchhchHHHHhhhCCCC---cccCeEEEeeceeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcc
Q 003611 317 VPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTL 392 (807)
Q Consensus 317 i~fH~i~~pa~l~a~~~~---~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~ 392 (807)
++| |+++++++++. ..|++.|++|||++. +|+|||||+||+|+|.++++ .||+|+|||||++.++.++|++
T Consensus 502 i~~----W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe-~yGaDalR~~L~~~~~~g~D~~ 576 (1052)
T PRK14900 502 IFF----WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITE-QYGADALRFTLAALTAQGRDIK 576 (1052)
T ss_pred HhH----HHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHH-HhCcHHHHHHHHhcCCCCCCCc
Confidence 976 77877776541 235699999999986 99999999999999999999 7999999999999899999999
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCC--CCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 003611 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGY--GSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQ 470 (807)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~--~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~ 470 (807)
|+++.+... ++|+|+||| ++|++.+..+ .+ ++..+.. ......|+|+++.++.++.++.++|++|+|+.
T Consensus 577 fs~~~l~~~--~~f~nkl~N-~~R~~~~~~~----~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~ 647 (1052)
T PRK14900 577 LAKERIEGY--RAFANKLWN-ASRFALMNLS----GYQERGEDPAR--LARTPADRWILARLQRAVNETVEALEAFRFND 647 (1052)
T ss_pred ccHHHHHHH--HHHHHHHHH-HHHHHHHhhh----ccCcccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999654 579999999 5777655433 22 2323221 12345789999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 471 GLKTAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 471 al~~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
|++.+++|+ ..+|+||+..+|| +.+++..+...+++++.++++.+++||+||||++|++||++|+.
T Consensus 648 A~~~i~~f~~~~~~n~Yie~~k~~-l~~~~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~ 715 (1052)
T PRK14900 648 AANAVYAFVWHELCDWYIELAKEA-LASEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRA 715 (1052)
T ss_pred HHHHHHHHHHHhhhHHHHHhccHh-hccCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcc
Confidence 999999997 4799999999886 45455555566788899999999999999999999999999974
No 14
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.5e-83 Score=771.91 Aligned_cols=504 Identities=22% Similarity=0.270 Sum_probs=417.7
Q ss_pred CCCCCCCCCC--CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH-cCC
Q 003611 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-DNC 85 (807)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~-~g~ 85 (807)
|.....|.+. .++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|||+||+||+.+|++ .|+
T Consensus 23 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~-~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~ 101 (800)
T PRK13208 23 WEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFS-YTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGI 101 (800)
T ss_pred HHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHh-HHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCC
Confidence 4445555543 35678999999999999999999998 5679999999999999999999999999999999998 498
Q ss_pred CHH------------HHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCC
Q 003611 86 SPK------------EICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCK 151 (807)
Q Consensus 86 ~p~------------e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~ 151 (807)
+++ ++++++++.|+++|++||+++| ++++|++|.|.+.|+++|.+|+++|+||++.+.++|||.|+
T Consensus 102 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 181 (800)
T PRK13208 102 RKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCE 181 (800)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCC
Confidence 876 5999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred ccccccccc------------------------ccCCCC--CCCC-----------------------------------
Q 003611 152 RFLADRLVE------------------------GTCPFE--GCNY----------------------------------- 170 (807)
Q Consensus 152 ~~l~d~~v~------------------------g~cp~~--~c~~----------------------------------- 170 (807)
++|+|++|+ ++||.. ||.+
T Consensus 182 t~Lsd~ev~~~~~~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V 261 (800)
T PRK13208 182 TAIAQAEVEYREREGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLV 261 (800)
T ss_pred CccchhhhccccccceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCcc
Confidence 999999763 456641 1211
Q ss_pred ----------CCCCCcchh-----------------------ccC----------------------CCCCccccC--CC
Q 003611 171 ----------ESARGDQCE-----------------------NCG----------------------KLLNATDLK--DP 193 (807)
Q Consensus 171 ----------~~~~g~~ce-----------------------~cG----------------------~~l~~~el~--~p 193 (807)
.-.+++.|| .|| ..+...++. .|
T Consensus 262 ~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p 341 (800)
T PRK13208 262 DPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVK 341 (800)
T ss_pred CCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCC
Confidence 001234443 232 222222333 49
Q ss_pred ccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccC--
Q 003611 194 KCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK-- 271 (807)
Q Consensus 194 ~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~-- 271 (807)
+|+|||++++.+.++||||+++++++++++++++..+ +|.+.++.+.+||++..+|||||||+.||+|||.|.++
T Consensus 342 ~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~---~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~ 418 (800)
T PRK13208 342 FCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINW---YPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDC 418 (800)
T ss_pred ccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEE---ECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCC
Confidence 9999999999999999999999999999999987543 56777888999999733499999999999999974321
Q ss_pred ------------------------------------CcEEEEEecccchhhhcccCCc---hhHhhhcCCCCCcceEEEE
Q 003611 272 ------------------------------------EKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFM 312 (807)
Q Consensus 272 ------------------------------------~~viyVWfDA~~~yis~~~~~~---~~~~~~W~~p~d~~~ih~i 312 (807)
.+|+|+|||+.+.+++.+ +|+ +.|+.|| |+| +++.
T Consensus 419 g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~-~~~~~~~~~~~~~--P~d---~~~~ 492 (800)
T PRK13208 419 GHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVT-GWERDEDLFEKVF--PMD---LRPQ 492 (800)
T ss_pred CCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHh-CCCCChhhhhhcC--Cce---EEEe
Confidence 279999999999887654 554 3577788 667 8999
Q ss_pred EeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCc
Q 003611 313 GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 391 (807)
Q Consensus 313 GkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~ 391 (807)
|+||++||..++.++..++... .+++.+++|||++ .+|+|||||+||+|+|.++++ .||+|++||||+ .+++++|+
T Consensus 493 G~Di~~~w~~~~l~~~~~~~~~-~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~yg~D~lR~~l~-~~~~~~d~ 569 (800)
T PRK13208 493 GHDIIRTWLFYTILRAYLLTGK-LPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLE-KYGADAVRYWAA-SARLGSDT 569 (800)
T ss_pred ecchhhhHHHHHHHHHHHhcCC-CCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHH-HcCccHHHHHHh-cCCCCCCc
Confidence 9999999998887666555332 3569999999997 699999999999999999999 699999999999 68899999
Q ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 003611 392 LFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQG 471 (807)
Q Consensus 392 ~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a 471 (807)
+|+++.+.. +++++++|+|+++++.. ..+ .+..+.. ......|++++++++.+.+++.++|++|+|+.|
T Consensus 570 ~fs~~~~~~--~~~~l~kl~N~~r~~~~-~~~------~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A 638 (800)
T PRK13208 570 PFDEKQVKI--GRRLLTKLWNASRFVLH-FSA------DPEPDKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAKA 638 (800)
T ss_pred eecHHHHHH--HHHHHHHHHHHHHHHHh-ccc------ccccCcc--ccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999875 68999999999876652 221 0111111 123457899999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhC
Q 003611 472 LKTAMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (807)
Q Consensus 472 l~~i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg 536 (807)
++.+++|+. .+|.|++..+||.......+.+..++.++.++++.+++||+|||||+|++||++|+
T Consensus 639 ~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~ 705 (800)
T PRK13208 639 LEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC
Confidence 999999986 59999999999876543333356788899999999999999999999999999998
No 15
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-81 Score=759.12 Aligned_cols=501 Identities=19% Similarity=0.237 Sum_probs=408.3
Q ss_pred CCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----c
Q 003611 9 PAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----D 83 (807)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~----~ 83 (807)
|.+...|.+.. .+++|+|++|||||||.||||||++.+ .+|+++||+||+|++|+|++|||+||++++.+.++ +
T Consensus 22 W~~~~~f~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~-~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~ 100 (874)
T PRK05729 22 WEEKGYFKPDDNSKKPFSIVIPPPNVTGSLHMGHALNNT-LQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAE 100 (874)
T ss_pred HHHCCCcccCcCCCCCEEEecCCCCCCCcchHHHHHHHH-HHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhc
Confidence 44455555532 345699999999999999999999964 59999999999999999999999999987766543 4
Q ss_pred CCCHHH------------HHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCC
Q 003611 84 NCSPKE------------ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDT 149 (807)
Q Consensus 84 g~~p~e------------~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~ 149 (807)
|+++.+ +++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++|||.
T Consensus 101 g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~ 180 (874)
T PRK05729 101 GKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPK 180 (874)
T ss_pred CCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCC
Confidence 777664 589999999999999999998 346799999999999999999999999999999999999
Q ss_pred CCcccccccccc------------------------------------------------------cCCCCCCCC-----
Q 003611 150 CKRFLADRLVEG------------------------------------------------------TCPFEGCNY----- 170 (807)
Q Consensus 150 ~~~~l~d~~v~g------------------------------------------------------~cp~~~c~~----- 170 (807)
|+|+|+|.+|+. .||. |+.
T Consensus 181 ~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~--~~~~ipii 258 (874)
T PRK05729 181 LQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPL--VGREIPII 258 (874)
T ss_pred CCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCC--CCCeeeEe
Confidence 999999998862 1332 111
Q ss_pred --------------------------------------CCCCCcchhccCCCC------------------------Ccc
Q 003611 171 --------------------------------------ESARGDQCENCGKLL------------------------NAT 188 (807)
Q Consensus 171 --------------------------------------~~~~g~~ce~cG~~l------------------------~~~ 188 (807)
-+.+|..++.||..- .+.
T Consensus 259 ~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~ 338 (874)
T PRK05729 259 ADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPH 338 (874)
T ss_pred cCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEe
Confidence 012355555565320 111
Q ss_pred ccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCcc
Q 003611 189 DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE 268 (807)
Q Consensus 189 el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~ 268 (807)
+...|+|+|||++++.+.++||||+++++++++.+++++... ..+|++..+.+.+||++ ++|||||||+.||+|||.|
T Consensus 339 ~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i-~~~P~~~~~~~~~wl~~-l~DWcISRq~~WG~pIP~~ 416 (874)
T PRK05729 339 THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEI-KFVPERWEKTYFHWMEN-IQDWCISRQLWWGHRIPAW 416 (874)
T ss_pred eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHhc-CccceeeeecccCCcccEE
Confidence 334799999999999999999999999999999999975432 23678888999999986 9999999999999999976
Q ss_pred ccCC----------------------cEEEEEecccchhhhcccCCch---hHhhhcCCCCCcceEEEEEeccccchhch
Q 003611 269 RFKE----------------------KVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (807)
Q Consensus 269 ~~~~----------------------~viyVWfDA~~~yis~~~~~~~---~~~~~W~~p~d~~~ih~iGkDii~fH~i~ 323 (807)
.+++ +|+++|||+.+.|++.+ +|++ +|+.|| |.| +|++|+||++|
T Consensus 417 ~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~l-gwp~~~~~~~~~~--P~d---~~~~G~Dii~~---- 486 (874)
T PRK05729 417 YDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTL-GWPEKTEDLKRFY--PTS---VLVTGFDIIFF---- 486 (874)
T ss_pred EeCCCcEEeCCcccccccccCeEeCCceecceecCCccHHHHh-CCCCCcHHHHhcC--Ccc---cccccccccch----
Confidence 5432 46677888888888765 7753 578888 567 89999999997
Q ss_pred HHHHhhhCCCC---cccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHH
Q 003611 324 FPSTLLGTGEN---WTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQ 399 (807)
Q Consensus 324 ~pa~l~a~~~~---~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~ 399 (807)
|+|++++.++. ..|++.+++|||++ .+|+|||||+||+|+|.|+++ .||+|++||||++.++.++|++|+++.+.
T Consensus 487 W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~-~yGaDalR~~ll~~~~~~~Di~fs~~~l~ 565 (874)
T PRK05729 487 WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLID-KYGADALRFTLAALASPGRDIRFDEERVE 565 (874)
T ss_pred HHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHH-HhChHHHHHHHHhCCCCCCCceeCHHHHH
Confidence 66666655432 12459999999998 799999999999999999999 69999999999998889999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 003611 400 AKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479 (807)
Q Consensus 400 ~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~ 479 (807)
.. .+++|+|+|+.+.+...+.. ...+.++.. ......|+|++..++.+.+.+.++|++|+|+.|++.+++|+
T Consensus 566 ~~--~~~~nkl~N~~Rf~~~~~~~----~~~~~~~~~--~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~ 637 (874)
T PRK05729 566 GY--RNFANKLWNASRFVLMNLEG----ADVGELPDP--EELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFI 637 (874)
T ss_pred HH--HHHHHHHHHHHHHHHHhccc----CCccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 76 56999999965544322222 222222211 12346799999999999999999999999999999999998
Q ss_pred --HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 480 --SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 480 --~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
..+|.|++..+||. . . .+ ...+++++.++++.+++||+||||++|++||++|+.
T Consensus 638 ~~~~~~~Yle~~k~~l-~-~-~~-~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~ 693 (874)
T PRK05729 638 WNEFCDWYLELAKPVL-Q-E-AA-KRATRATLAYVLEQILRLLHPFMPFITEELWQKLAP 693 (874)
T ss_pred HHHHHHHHHHHHHHHh-h-h-hH-HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhccc
Confidence 57999999999994 3 2 22 457788999999999999999999999999999974
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.5e-79 Score=746.28 Aligned_cols=509 Identities=18% Similarity=0.217 Sum_probs=410.5
Q ss_pred CCCCCCCCCC--CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----
Q 003611 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME---- 82 (807)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~---- 82 (807)
|.....|.+. .++++|+|++|||||||.||||||++. +.+|+++||+||+||+|+|++|||+||.|++.+.++
T Consensus 73 W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~-~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~ 151 (958)
T PLN02943 73 WESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFV-TLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLAS 151 (958)
T ss_pred HHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHH-HHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHH
Confidence 4455666553 356779999999999999999999985 559999999999999999999999999999886654
Q ss_pred cCCCH------------HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecC
Q 003611 83 DNCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148 (807)
Q Consensus 83 ~g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (807)
+|+++ .++++++.+.++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++|||
T Consensus 152 ~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp 231 (958)
T PLN02943 152 EGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSP 231 (958)
T ss_pred cCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCC
Confidence 36644 35678999999999999999887 57789999999999999999999999999999999999
Q ss_pred CCCccccccccccc--------------------------CCCC--CC--------------------------C-----
Q 003611 149 TCKRFLADRLVEGT--------------------------CPFE--GC--------------------------N----- 169 (807)
Q Consensus 149 ~~~~~l~d~~v~g~--------------------------cp~~--~c--------------------------~----- 169 (807)
.|+|.|+|.+|+.. -|.. || +
T Consensus 232 ~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipi 311 (958)
T PLN02943 232 NLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPI 311 (958)
T ss_pred CCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeE
Confidence 99999999888621 1110 00 0
Q ss_pred -------------------CC-------------------CCCCcchhccCCC------------------C--CccccC
Q 003611 170 -------------------YE-------------------SARGDQCENCGKL------------------L--NATDLK 191 (807)
Q Consensus 170 -------------------~~-------------------~~~g~~ce~cG~~------------------l--~~~el~ 191 (807)
++ +..|...+.+|.. + ++.+..
T Consensus 312 i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~ 391 (958)
T PLN02943 312 IADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLR 391 (958)
T ss_pred EecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecC
Confidence 00 0112222223322 1 112345
Q ss_pred CCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCcccc-
Q 003611 192 DPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF- 270 (807)
Q Consensus 192 ~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~- 270 (807)
.|+|+|||++++.+.++|||++++.+++++.+++++.+. ..+|.+..+.+.+|++ +++|||||||+.||+|||.|.+
T Consensus 392 ~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i-~~~P~~~~~~~~~wl~-~l~DWcISRQr~WG~pIP~w~~~ 469 (958)
T PLN02943 392 VPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGEL-TIIPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIV 469 (958)
T ss_pred CCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCc-EEEChHHHHHHHHHHh-cCccceEEEecCCCCccCceecc
Confidence 799999999999999999999999999999999975432 1256677888899998 6999999999999999998753
Q ss_pred ---------------------------------CCcEEEEEecccchhhhcccCCc----hhHhhhcCCCCCcceEEEEE
Q 003611 271 ---------------------------------KEKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMG 313 (807)
Q Consensus 271 ---------------------------------~~~viyVWfDA~~~yis~~~~~~----~~~~~~W~~p~d~~~ih~iG 313 (807)
+.+|+||||||.+.|++.+ +|+ ++|+.|| |.| +++.|
T Consensus 470 ~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~l-gwp~~~~~~~~~~y--P~d---l~~~G 543 (958)
T PLN02943 470 GKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTL-GWPDVSAEDFKKFY--PTT---VLETG 543 (958)
T ss_pred ccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhc-CCCccChHHHhccC--CCe---EEEEe
Confidence 3589999999999998875 674 3688888 567 79999
Q ss_pred eccccchhchHHHHhhhCCCC---cccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCC
Q 003611 314 KDNVPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389 (807)
Q Consensus 314 kDii~fH~i~~pa~l~a~~~~---~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~ 389 (807)
+||++| |++.+++.+.. ..|++++++|||++ .+|+|||||+||+|+|.++++ .||+|++||||++. ++++
T Consensus 544 ~Dii~f----W~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~-~ygaDalR~~l~~~-~~~~ 617 (958)
T PLN02943 544 HDILFF----WVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIK-EFGTDALRFTLALG-TAGQ 617 (958)
T ss_pred ehHHHH----HHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHH-hcCChHHHHHHHhC-CCCC
Confidence 999976 88886666553 12458999999997 799999999999999999999 69999999999984 5699
Q ss_pred CccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCC---------CCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 003611 390 DTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG---------QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYL 460 (807)
Q Consensus 390 D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~---------~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~ 460 (807)
|++|+++.|.. |++++++|+|+.+++...+..... ..+++..+ .......|+|+++.++.+++++.
T Consensus 618 d~~fs~~~l~~--~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~D~wilskl~~~i~~v~ 692 (958)
T PLN02943 618 DLNLSTERLTS--NKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEES---LLSLPLPECWVVSKLHELIDSVT 692 (958)
T ss_pred CccccHHHHHH--HHHHHHHHHHHHHHHHhccccccccccccccccccCCcccc---ccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999987 599999999998877654321000 01221111 01234579999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHH--HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 461 EAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 461 ~~~e~~~~~~al~~i~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
++|++|+|+.|++.+++|+ ..+|+|++..+||...+++.....++.+++..+++.+++||+|||||+||+||++|+.
T Consensus 693 ~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~ 771 (958)
T PLN02943 693 TSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPY 771 (958)
T ss_pred HHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCC
Confidence 9999999999999999995 6799999999998544333344566788889999999999999999999999999974
No 17
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.6e-78 Score=742.17 Aligned_cols=513 Identities=17% Similarity=0.230 Sum_probs=403.5
Q ss_pred CCCCCCCCCCC----CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH-
Q 003611 8 NPAAPPPKLPI----PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME- 82 (807)
Q Consensus 8 ~~~~~~~~~~~----~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~- 82 (807)
.|.+...|... .++++|++++|||||||.|||||+++. +.+|+++||+||+||+|.|++|||+||+||+.++++
T Consensus 20 ~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~-~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~ 98 (1159)
T PLN02882 20 LWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAG-TIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKK 98 (1159)
T ss_pred HHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHH-HHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHH
Confidence 35555555442 366789999999999999999999996 559999999999999999999999999999999864
Q ss_pred cCCC----------------HHHHHHHHHHHHHHHHhhcCc--ccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeee
Q 003611 83 DNCS----------------PKEICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQ 144 (807)
Q Consensus 83 ~g~~----------------p~e~~~~~~~~~~~~~~~lgI--~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~ 144 (807)
.|++ |++++.+|.+.+++++++||+ ++|+.++|+++.|.+.|+++|.+|+++|+||++.+.+
T Consensus 99 lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v 178 (1159)
T PLN02882 99 LGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVM 178 (1159)
T ss_pred cCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeE
Confidence 4653 567899999999999999995 5568999999999999999999999999999999999
Q ss_pred eecCCCCccccccccc--c---------------------------cCCCC--CCC-----CCC----------------
Q 003611 145 PYCDTCKRFLADRLVE--G---------------------------TCPFE--GCN-----YES---------------- 172 (807)
Q Consensus 145 ~y~~~~~~~l~d~~v~--g---------------------------~cp~~--~c~-----~~~---------------- 172 (807)
+|||.|+|.|++.+++ . |.|+. +|. .+.
T Consensus 179 ~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~ 258 (1159)
T PLN02882 179 PYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIV 258 (1159)
T ss_pred eecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEE
Confidence 9999999999976552 0 11210 000 000
Q ss_pred ---------------------------------------------------------C------------CCc-------
Q 003611 173 ---------------------------------------------------------A------------RGD------- 176 (807)
Q Consensus 173 ---------------------------------------------------------~------------~g~------- 176 (807)
. .|.
T Consensus 259 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aP 338 (1159)
T PLN02882 259 AESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAP 338 (1159)
T ss_pred hHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecC
Confidence 0 000
Q ss_pred --------chhc---------------------------------------------cCCCCCcccc--CCCccccCCCc
Q 003611 177 --------QCEN---------------------------------------------CGKLLNATDL--KDPKCKVCRNA 201 (807)
Q Consensus 177 --------~ce~---------------------------------------------cG~~l~~~el--~~p~c~~~g~~ 201 (807)
.|.. +|.++...++ .+|+|||||+|
T Consensus 339 ahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tp 418 (1159)
T PLN02882 339 AFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTP 418 (1159)
T ss_pred CCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCE
Confidence 0101 1111111122 24999999999
Q ss_pred eEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHH-HHHHHHHHHcCccceeeeeccCCCCccCccccCC--------
Q 003611 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA-IQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE-------- 272 (807)
Q Consensus 202 ~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~-------- 272 (807)
++++.++|||++++++++++++..++..+. |+.. .+.+.+||.+ ++|||||||+.||+|+|.|.+++
T Consensus 419 li~~a~~qWFi~~~~~k~~~l~~~~~i~w~---P~~~~~~r~~~wl~~-~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~ 494 (1159)
T PLN02882 419 LIYRAVPSWFVKVEEIKDRLLENNKQTYWV---PDYVKEKRFHNWLEN-ARDWAVSRSRFWGTPLPIWISDDGEEVVVIG 494 (1159)
T ss_pred EEEEecceeEEEcHHHHHHHHHhhCCcEEE---CCcchhhHHHHHHhc-CcccceeeccccCCccceEEeCCCCeEEecC
Confidence 999999999999999999999987765543 4444 3578999987 99999999999999999875321
Q ss_pred -----------------------------------------cEEEEEecccchhhhcccCCc----hhHhhhcCCCCCcc
Q 003611 273 -----------------------------------------KVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVE 307 (807)
Q Consensus 273 -----------------------------------------~viyVWfDA~~~yis~~~~~~----~~~~~~W~~p~d~~ 307 (807)
+|+|||||+.+...+.. +|+ +.|..+| |+|
T Consensus 495 s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~-~~p~e~~~~f~~~~--PaD-- 569 (1159)
T PLN02882 495 SIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYI-HYPFENKELFEKNF--PAD-- 569 (1159)
T ss_pred cHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHc-CCcccChhHhhccC--Cce--
Confidence 68999999988877654 665 2466778 677
Q ss_pred eEEEEEeccccchhchHHHHhhhCC---CCcccCeEEEeeceeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003611 308 LYQFMGKDNVPFHTVMFPSTLLGTG---ENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 308 ~ih~iGkDii~fH~i~~pa~l~a~~---~~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
+++.|+||+++ |+++|++++ .+.++|+++++|||++. +|+|||||+||+|+|.++++ .||+|+|||||++
T Consensus 570 -~i~eG~Dq~Rg----Wf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlGNvIdP~evi~-~YGADaLR~~Ll~ 643 (1159)
T PLN02882 570 -FVAEGLDQTRG----WFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLKNYPDPNEVID-KYGADALRLYLIN 643 (1159)
T ss_pred -EEEEecchhhh----HHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCCCCCCHHHHHH-HhCcHHHHHHHHh
Confidence 89999999997 555444432 13368999999999996 89999999999999999999 7999999999997
Q ss_pred cCC-CCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCC-C--CCChHHHHHHHHHHHHHHHHH
Q 003611 384 NRP-EVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDAN-G--AESHQLTKTLAEKVGKYVEQY 459 (807)
Q Consensus 384 ~~~-~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~-~--~~~~~~d~~l~~~l~~~~~~~ 459 (807)
... .++|++|+++.+.+.. ++++++++|.++.++..+......++++..|... . .....+|+|+++.++.+.+.+
T Consensus 644 s~~~~~~d~~fs~~~v~~~~-~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v 722 (1159)
T PLN02882 644 SPVVRAEPLRFKEEGVFGVV-KDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFV 722 (1159)
T ss_pred CCcccCcCcccCHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 433 3789999999988754 3455566665544433322110113455555321 0 122467999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHH-HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 460 LEAMEKVKLKQGLKTAMSISS-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 460 ~~~~e~~~~~~al~~i~~l~~-~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
.++|++|+|++|++.|++|+. .+|+|++..+||.+.+.+.+++.+++++++++++.++.||+||||++|++||++|+.
T Consensus 723 ~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~ 801 (1159)
T PLN02882 723 REEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRK 801 (1159)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhcc
Confidence 999999999999999999997 699999999999887655567788999999999999999999999999999999974
No 18
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1e-78 Score=740.84 Aligned_cols=494 Identities=20% Similarity=0.266 Sum_probs=405.9
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CCC------H----
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS------P---- 87 (807)
Q Consensus 19 ~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~~------p---- 87 (807)
.++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+.+|+++ |++ +
T Consensus 33 ~~~~~f~i~~~pPy~nG~lH~GH~~~~-~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~ 111 (861)
T TIGR00392 33 KGKPEFIFHDGPPYANGSIHLGHALNK-ILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIE 111 (861)
T ss_pred CCCCCeEEecCCCCCCCCccHHHHHHH-HHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHH
Confidence 466789999999999999999999996 5599999999999999999999999999999999876 654 3
Q ss_pred ------HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccc
Q 003611 88 ------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (807)
Q Consensus 88 ------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (807)
+++++++.+.++++|++||++.| +.+.|++|.|.+.++++|.+|+++|+||++...++|||.|+|.|+|.+|
T Consensus 112 ~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev 191 (861)
T TIGR00392 112 EFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEV 191 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHH
Confidence 47899999999999999999775 7889999999999999999999999999999999999999999999988
Q ss_pred ccc-------CCC----------C----------------------CCC----C-CC-----------C-----------
Q 003611 160 EGT-------CPF----------E----------------------GCN----Y-ES-----------A----------- 173 (807)
Q Consensus 160 ~g~-------cp~----------~----------------------~c~----~-~~-----------~----------- 173 (807)
+.. +|. . +|. . +. .
T Consensus 192 ~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~ 271 (861)
T TIGR00392 192 EYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEK 271 (861)
T ss_pred hcccccccccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHH
Confidence 532 111 0 000 0 00 0
Q ss_pred --------C---------------------Ccc---------------------------h-------------------
Q 003611 174 --------R---------------------GDQ---------------------------C------------------- 178 (807)
Q Consensus 174 --------~---------------------g~~---------------------------c------------------- 178 (807)
+ +.. |
T Consensus 272 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~ 351 (861)
T TIGR00392 272 LYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVL 351 (861)
T ss_pred HHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcc
Confidence 0 000 0
Q ss_pred ---hccCCC-------------CCcc-------------------------ccCCCccccCCCceEEeeecceeEeccch
Q 003611 179 ---ENCGKL-------------LNAT-------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPAL 217 (807)
Q Consensus 179 ---e~cG~~-------------l~~~-------------------------el~~p~c~~~g~~~~~~~~~~~f~~l~~~ 217 (807)
+..|+. +... ....|+|||||++++++.++|||++++++
T Consensus 352 ~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~ 431 (861)
T TIGR00392 352 SPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDI 431 (861)
T ss_pred cccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHH
Confidence 000110 0000 01248999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccC--------------------------
Q 003611 218 RNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK-------------------------- 271 (807)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~-------------------------- 271 (807)
++++++++++..+ +|....+.+.+||+ +++|||||||+.||+|||.|.++
T Consensus 432 k~~~l~~~~~i~~---~P~~~~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w 507 (861)
T TIGR00392 432 KDQMLEQIKKVNW---VPEWGEGRFGNWLE-NRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAW 507 (861)
T ss_pred HHHHHHHhCCcEE---ECchHHHHHHHHHh-CCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccc
Confidence 9999999987654 45667788899998 59999999999999999986532
Q ss_pred -------------------------CcEEEEEecccchhhhcccCCch---hHhhhcCCCCCcceEEEEEecccc--chh
Q 003611 272 -------------------------EKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVP--FHT 321 (807)
Q Consensus 272 -------------------------~~viyVWfDA~~~yis~~~~~~~---~~~~~W~~p~d~~~ih~iGkDii~--fH~ 321 (807)
.+|+||||||+++|++.. +|+. +|+.|| |.| +|++|+||++ ||+
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWfdS~~~~~~~~-~~~~~~~~f~~~~--P~d---~~i~G~Di~r~Wf~~ 581 (861)
T TIGR00392 508 FEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWFDSGSMPYASI-HYPFENEKFKEVF--PAD---FILEGSDQTRGWFYS 581 (861)
T ss_pred cccchhhhcCchhccCCCCcceEEccccccchhhcCcchHHhc-CCCCCcchhhccC--Cce---EEEEecchhccHHHH
Confidence 249999999999999865 4542 478888 567 8999999998 999
Q ss_pred chHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHH
Q 003611 322 VMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQA 400 (807)
Q Consensus 322 i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~ 400 (807)
.+|+++++. +. .||+.+++|||++ .+|+|||||+||+|+|.|+++ .||+|++||||++. +.++|++|+++.+..
T Consensus 582 ~~~~~~~~~-~~--~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~-~yGaDalR~~ll~~-~~~~D~~fs~~~l~~ 656 (861)
T TIGR00392 582 SLAIGTALF-GQ--APYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVIN-KYGADILRLYVASS-DPWEDLRFSDEILKQ 656 (861)
T ss_pred HHHHHHHHc-CC--CChHhhEecceEECCCCCCcCCCCCCCCCHHHHHH-HcCHHHHHHHHHhC-CCCCCceECHHHHHH
Confidence 999998763 43 4789999999998 499999999999999999999 69999999999997 899999999999976
Q ss_pred HHhHHHHHHHHHHHHHHH--HhHhCCCCCCCCC--cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 003611 401 KSNNELLNNLGNFINRVL--SFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM 476 (807)
Q Consensus 401 ~~n~~l~~~l~Nl~~R~~--~~~~k~~~~~~~g--~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~ 476 (807)
.++++.+.++|+++++. +.+.+ ++. ..+.. ......|++++..++.+.+++.++|++|+|+.|++.++
T Consensus 657 -~~~~~~n~l~N~~~~~~~~~~l~~-----~~~~~~~~~~--~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~ 728 (861)
T TIGR00392 657 -VVEKYRKIRWNTYRFLLTYANLDK-----FDPLFNSVAV--EKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQ 728 (861)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcccc-----CCcccccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45679999999999887 44433 221 11110 12345789999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHhhcc--hhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 477 SISSE--GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 477 ~l~~~--~N~yi~~~~p--w~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
+|+.. +|.|++..+| |...+++..+ ++..++..+++.+++||+||||++|++||++|+..
T Consensus 729 ~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~--~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~ 792 (861)
T TIGR00392 729 DFIVEELSNWYIRIIRDRLYCEAKDNDKR--AAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG 792 (861)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc
Confidence 99875 9999999876 8776543222 56677888999999999999999999999999753
No 19
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.8e-78 Score=734.95 Aligned_cols=507 Identities=20% Similarity=0.294 Sum_probs=403.1
Q ss_pred CCCCCCCCCC----CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-
Q 003611 9 PAAPPPKLPI----PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED- 83 (807)
Q Consensus 9 ~~~~~~~~~~----~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~- 83 (807)
|.+...|.+. .++++|+|++|||||||.|||||+++.+ .+|+++||+||+||+|.|++|||+||+||+..+++.
T Consensus 24 W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t-~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l 102 (975)
T PRK06039 24 WKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRT-IKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKEL 102 (975)
T ss_pred HHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhH-HHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHh
Confidence 4555555432 4677899999999999999999999965 599999999999999999999999999999999874
Q ss_pred CCC----------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeee
Q 003611 84 NCS----------------PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQP 145 (807)
Q Consensus 84 g~~----------------p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~ 145 (807)
|++ +.++++++.+.++++|++||++.| +.+.|+++.|.+.|+++|.+|+++|+||++...++
T Consensus 103 ~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~ 182 (975)
T PRK06039 103 GISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVP 182 (975)
T ss_pred CcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeee
Confidence 765 678999999999999999998776 67889999999999999999999999999999999
Q ss_pred ecCCCCccccccccccc-C---------------------------CCC--CCC-----CCC----------C-------
Q 003611 146 YCDTCKRFLADRLVEGT-C---------------------------PFE--GCN-----YES----------A------- 173 (807)
Q Consensus 146 y~~~~~~~l~d~~v~g~-c---------------------------p~~--~c~-----~~~----------~------- 173 (807)
|||.|+|.|++.+|++. + |.. +|. .+. .
T Consensus 183 wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~ 262 (975)
T PRK06039 183 YCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEAL 262 (975)
T ss_pred ecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHH
Confidence 99999999999988721 1 110 000 000 0
Q ss_pred --------------------------------------------------CCcc---------------hh---------
Q 003611 174 --------------------------------------------------RGDQ---------------CE--------- 179 (807)
Q Consensus 174 --------------------------------------------------~g~~---------------ce--------- 179 (807)
.|.- |.
T Consensus 263 ~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~ 342 (975)
T PRK06039 263 LEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCP 342 (975)
T ss_pred HHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccce
Confidence 0000 00
Q ss_pred --ccCCCCC-----------------------------cc--ccCCCccccCCCceEEeeecceeEeccchHHHHHHHHH
Q 003611 180 --NCGKLLN-----------------------------AT--DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (807)
Q Consensus 180 --~cG~~l~-----------------------------~~--el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (807)
.-|++.+ .. ....|+|||||++++++.++|||+++++++++++++++
T Consensus 343 id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~ 422 (975)
T PRK06039 343 VDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQ 422 (975)
T ss_pred eCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhC
Confidence 0011100 00 11359999999999999999999999999999999998
Q ss_pred cCCCCCCCChHHHH-HHHHHHHcCccceeeeeccCCCCccCccccC----------------------------------
Q 003611 227 NMSVAGSWSQNAIQ-ATHAWLKEGLKVRCITRDLKWGVPVPLERFK---------------------------------- 271 (807)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~---------------------------------- 271 (807)
+..+. |+..++ .+.+||++ ++|||||||+.||+|||.|.++
T Consensus 423 ~i~~~---P~~~~~~~~~~wl~~-l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~ 498 (975)
T PRK06039 423 KINWY---PEHIKDGRFGKWLEN-ARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDE 498 (975)
T ss_pred CeEEE---CcccchhhHHHHHhc-CccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhccccccc
Confidence 75543 444455 77899985 9999999999999999986432
Q ss_pred --------------CcEEEEEecccchhhhcccCCch----hHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCC-
Q 003611 272 --------------EKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTG- 332 (807)
Q Consensus 272 --------------~~viyVWfDA~~~yis~~~~~~~----~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~- 332 (807)
.+|+||||||.+.|++.. +|+. .|+.|| |+| +++.|+||++| |.+.++.++
T Consensus 499 ~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~-~~p~~~~~~f~~~~--Pad---~~~~G~Di~r~----Wf~~l~~~~~ 568 (975)
T PRK06039 499 VTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQL-HYPFENKEWFEKHF--PAD---FIVEGIDQTRG----WFYTLLALST 568 (975)
T ss_pred ccccCCCCcceEeccccccceeecCCccHHHh-CCcccChhhhhccC--Cce---EEEechhhHhh----HHHHHHHHHH
Confidence 289999999999998865 5642 478888 567 89999999986 444444332
Q ss_pred --CCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHH
Q 003611 333 --ENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNN 409 (807)
Q Consensus 333 --~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~ 409 (807)
.+..+++++++|||++ .+|+|||||+||+|+|.++++ .||+|++||||++..+.++|++||++.+.+.+|+.+ ++
T Consensus 569 ~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l-~k 646 (975)
T PRK06039 569 ALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD-KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFL-LT 646 (975)
T ss_pred HhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHH-HH
Confidence 1124789999999988 499999999999999999999 699999999999988889999999999777776665 99
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHHHh
Q 003611 410 LGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNAYLQE 488 (807)
Q Consensus 410 l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~-~N~yi~~ 488 (807)
|+|+++|+..+..- . .++..............|+|+++.++.+.+.+.++|++|+|+.|++.+++|+.. +|+|++.
T Consensus 647 l~N~~~f~~~y~~~-~--~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~ 723 (975)
T PRK06039 647 LWNVYSFFVLYANL-D--GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRR 723 (975)
T ss_pred HHHHHHHHHHHhhh-c--cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987643321 0 111110000011234679999999999999999999999999999999999965 6999987
Q ss_pred h--cchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 489 S--QFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 489 ~--~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
. ++|...+. . ...+++.++.++++.++.||+||||++|++||++|+.
T Consensus 724 ~k~r~w~~~~~-~-~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~ 772 (975)
T PRK06039 724 SRRRFWKEEDD-P-DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTR 772 (975)
T ss_pred hhhhhccCCCc-H-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 7 45876432 2 2345778888999999999999999999999999985
No 20
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.7e-78 Score=730.94 Aligned_cols=492 Identities=19% Similarity=0.257 Sum_probs=392.8
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc------CCCHH----
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED------NCSPK---- 88 (807)
Q Consensus 19 ~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~------g~~p~---- 88 (807)
.++++|+|++|||||||.+|||||++. +.+|+++||+||+|++|+|++|||+||+||+.+|+++ ++++.
T Consensus 46 ~~~~~f~i~~~pPyanG~lHiGHa~~~-~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~ 124 (912)
T PRK05743 46 KGKPKFILHDGPPYANGDIHIGHALNK-ILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRK 124 (912)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHH-HHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHH
Confidence 467789999999999999999999995 6699999999999999999999999999999999885 66776
Q ss_pred ---HHHHHHHHHHHHHHhhcCccc--ccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccc--
Q 003611 89 ---EICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG-- 161 (807)
Q Consensus 89 ---e~~~~~~~~~~~~~~~lgI~~--D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g-- 161 (807)
++++++++.++++|++||++. |++++|+++.|.+.++++|.+|+++|+||++.++++||+.|++.|+|.+|+.
T Consensus 125 ~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~ 204 (912)
T PRK05743 125 KCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD 204 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc
Confidence 488999999999999999955 5889999999999999999999999999999999999999999999998862
Q ss_pred -cCCC-----------------------------C--CCC-----CCC----------CC--------------------
Q 003611 162 -TCPF-----------------------------E--GCN-----YES----------AR-------------------- 174 (807)
Q Consensus 162 -~cp~-----------------------------~--~c~-----~~~----------~~-------------------- 174 (807)
.+|. . +|. .+. .+
T Consensus 205 ~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 284 (912)
T PRK05743 205 KTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYE 284 (912)
T ss_pred ccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceE
Confidence 1110 0 000 000 00
Q ss_pred ------------------------------------Ccc---------------h-----------hccCCCCC------
Q 003611 175 ------------------------------------GDQ---------------C-----------ENCGKLLN------ 186 (807)
Q Consensus 175 ------------------------------------g~~---------------c-----------e~cG~~l~------ 186 (807)
|.. | +.-|+..+
T Consensus 285 ~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~ 364 (912)
T PRK05743 285 VLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFA 364 (912)
T ss_pred EEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccC
Confidence 000 0 00011100
Q ss_pred -----------------------cc--ccCCCccccCCCceEEeeecceeEeccc--hHHHHHHHHHcCCCCCCCChHHH
Q 003611 187 -----------------------AT--DLKDPKCKVCRNAPQIRDTNHLFLDLPA--LRNKLEEYINNMSVAGSWSQNAI 239 (807)
Q Consensus 187 -----------------------~~--el~~p~c~~~g~~~~~~~~~~~f~~l~~--~~~~l~~~~~~~~~~~~~~~~~~ 239 (807)
.. ....|+|||||++++++.++|||+++++ +++.+++.+++..+. |+..+
T Consensus 365 Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~---P~~~~ 441 (912)
T PRK05743 365 GLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWI---PAWGK 441 (912)
T ss_pred CcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEE---ChHHH
Confidence 00 0136999999999999999999999998 999999999876554 45567
Q ss_pred HHHHHHHHcCccceeeeeccCCCCccCccccCC--------------------cEEEEEecccchhhhc--ccCCc----
Q 003611 240 QATHAWLKEGLKVRCITRDLKWGVPVPLERFKE--------------------KVFYVWFDAPIGYVSI--TSCYT---- 293 (807)
Q Consensus 240 ~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~--------------------~viyVWfDA~~~yis~--~~~~~---- 293 (807)
+.+.+||++ ++|||||||+.||+|||.+.+++ +.+++|||+...++.. ...+.
T Consensus 442 ~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~D 520 (912)
T PRK05743 442 NRIESMVEN-RPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETD 520 (912)
T ss_pred HHHHHHHhc-CcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCc
Confidence 788999987 99999999999999999965431 2345666665444422 00110
Q ss_pred -----------------hhHhhhcCCCCCcceEEEEEecccc--chhchHHHHhhhCCCCcccCeEEEeeceee-cCCCc
Q 003611 294 -----------------NEWEQWWKNPENVELYQFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGK 353 (807)
Q Consensus 294 -----------------~~~~~~W~~p~d~~~ih~iGkDii~--fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~K 353 (807)
...+.+| |+| +|++|+||++ ||+.+|+++++ .|. .||+++++|||++ .+|+|
T Consensus 521 vlDvWfdSg~s~~~~~~~~~~~~~--P~D---l~~~G~Di~r~Wf~~~l~~~~~~-~g~--~P~k~vl~HG~vld~~G~K 592 (912)
T PRK05743 521 ILDVWFDSGSSHAAVLEQRPELGY--PAD---LYLEGSDQHRGWFQSSLLTSVAT-RGK--APYKQVLTHGFTVDGKGRK 592 (912)
T ss_pred hhhhhhhhCCCHHHHhcCccccCC--Cce---EEEecccccchHHHHHHHHHHHh-cCC--CccceeEEeeeEECCCCCC
Confidence 0012356 567 8999999995 88999999998 554 5899999999998 49999
Q ss_pred cccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCC---
Q 003611 354 FSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--- 430 (807)
Q Consensus 354 MSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~--- 430 (807)
||||+||+|+|.++++ .||+|+||||+++ +++++|++|+.+.+.+. ++++++|+|.++.+++.+.. ++
T Consensus 593 MSKSlGNvIdP~~ii~-~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~--~~~~~kl~N~~rf~~~nl~~-----~~~~~ 663 (912)
T PRK05743 593 MSKSLGNVIDPQDVIK-KYGADILRLWVAS-TDYSGDVRISDEILKQV--AEAYRRIRNTLRFLLGNLND-----FDPAK 663 (912)
T ss_pred CCCCCCCcCCHHHHHH-hcChHHHHHHHHh-cCCCCCeeecHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCccc
Confidence 9999999999999999 7999999999997 88899999999998874 78899999999877654332 21
Q ss_pred CcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhhcchhh--ccCChHHHHHHH
Q 003611 431 SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKL--YKEDQPSCSIVM 506 (807)
Q Consensus 431 g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~N~yi~~~~pw~l--~k~~~~~~~~~l 506 (807)
+.++. .....+|+|++..++.+.+++.++|++|+|++|++.+++|+ ..+|.|++..+||.. .+++ ....++.
T Consensus 664 ~~~~~---~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~-~~r~~~~ 739 (912)
T PRK05743 664 DAVPY---EELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADS-LARRSAQ 739 (912)
T ss_pred ccCCc---hhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCc-HHHHHHH
Confidence 11221 12346799999999999999999999999999999999999 568999999999643 3222 2234455
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhC
Q 003611 507 RTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (807)
Q Consensus 507 ~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg 536 (807)
.++..++..++.||+|||||+|++||++|+
T Consensus 740 ~vL~~~l~~l~~lLaPi~P~~aEelw~~l~ 769 (912)
T PRK05743 740 TALYHILEALVRWLAPILSFTAEEIWQYLP 769 (912)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 667777888999999999999999999996
No 21
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-76 Score=682.43 Aligned_cols=509 Identities=20% Similarity=0.270 Sum_probs=415.8
Q ss_pred CCCCCCCCCCCCCC--CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc--
Q 003611 8 NPAAPPPKLPIPGK--RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-- 83 (807)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-- 83 (807)
.|...+.|.|..+. ++|.|.+|||||+|.||||||++.++ .|+++||+||+||+|+|++|+|++|.+++...+++
T Consensus 17 ~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl-~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~ 95 (877)
T COG0525 17 KWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTL-QDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLA 95 (877)
T ss_pred HHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHH-HHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHH
Confidence 57777888887543 66999999999999999999999765 99999999999999999999999999988777653
Q ss_pred --CCC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeec
Q 003611 84 --NCS------------PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYC 147 (807)
Q Consensus 84 --g~~------------p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~ 147 (807)
|++ +.+|.+++...++++|++||+++| +.+.|+||.+.+.|++.|.+|+++|+||++++.+.||
T Consensus 96 ~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWc 175 (877)
T COG0525 96 AEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWC 175 (877)
T ss_pred HcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCC
Confidence 554 346788999999999999999998 4567999999999999999999999999999999999
Q ss_pred CCCCccccccccccc-------------------------CCCC--CC--------------------------------
Q 003611 148 DTCKRFLADRLVEGT-------------------------CPFE--GC-------------------------------- 168 (807)
Q Consensus 148 ~~~~~~l~d~~v~g~-------------------------cp~~--~c-------------------------------- 168 (807)
|.|+|.++|.+|+.. -|.. ||
T Consensus 176 P~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIi 255 (877)
T COG0525 176 PKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPII 255 (877)
T ss_pred CccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeee
Confidence 999999999888621 1110 11
Q ss_pred -----------------CCCC-------------------CCCcchhccC-C----------------------CCC--c
Q 003611 169 -----------------NYES-------------------ARGDQCENCG-K----------------------LLN--A 187 (807)
Q Consensus 169 -----------------~~~~-------------------~~g~~ce~cG-~----------------------~l~--~ 187 (807)
-+++ ..|..-++|+ . ++. +
T Consensus 256 aD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~ 335 (877)
T COG0525 256 ADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEP 335 (877)
T ss_pred cCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeee
Confidence 0110 1122223333 1 111 1
Q ss_pred cccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCc
Q 003611 188 TDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPL 267 (807)
Q Consensus 188 ~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~ 267 (807)
....-|+|+|||++++...++|||+++..+++.+.+..++... ...|++..+...+|+++ ++|||||||+.||.+||.
T Consensus 336 ~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i-~f~P~~~~~~~~~W~~~-i~DWcISRQlwwGh~IPv 413 (877)
T COG0525 336 HKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKI-KFVPERMEKRYEDWMEN-IRDWCISRQLWWGHRIPV 413 (877)
T ss_pred ccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCc-eEecHHHHHHHHHHHhh-CcCceeeeeeecCcccce
Confidence 1223589999999999999999999999999999999984321 12477788888999986 889999999999999999
Q ss_pred cccC-----------------------------CcEEEEEecccchhhhcccCCch---hHhhhcCCCCCcceEEEEEec
Q 003611 268 ERFK-----------------------------EKVFYVWFDAPIGYVSITSCYTN---EWEQWWKNPENVELYQFMGKD 315 (807)
Q Consensus 268 ~~~~-----------------------------~~viyVWfDA~~~yis~~~~~~~---~~~~~W~~p~d~~~ih~iGkD 315 (807)
|.+. .+|+++||++.+-.++.+ +|++ ++++|. |.+ +.+.|.|
T Consensus 414 Wy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstl-gWp~~t~~l~~fy--Pt~---llvtG~D 487 (877)
T COG0525 414 WYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTL-GWPEETPDLKKFY--PTD---LLVTGHD 487 (877)
T ss_pred EEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhccccccccc-CCCCcchHHHhcC--CCc---cccccch
Confidence 9761 268999999988888765 8875 577777 556 6889999
Q ss_pred cccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q 003611 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (807)
Q Consensus 316 ii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs 394 (807)
|+||+..+...+.+..... .|++.|+.||.+. .+|+|||||+||||+|.|+++ .||+|+|||+|++.+..|+|++|+
T Consensus 488 IIffWvarmi~~~~~~~~~-~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-~yGaDAlRf~la~~~~~G~Di~~~ 565 (877)
T COG0525 488 IIFFWVARMIMRGLHLTGE-VPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-KYGADALRFTLASLASPGRDINFD 565 (877)
T ss_pred hhHHHHHHHHHHHHHhcCC-CCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHH-HhChHHHHHHHHhccCCCcccCcC
Confidence 9999987654443443333 5789999999987 789999999999999999999 699999999999987889999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 003611 395 WADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKT 474 (807)
Q Consensus 395 ~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~ 474 (807)
++.+... ++++|+++|..++++....+ ... .+... ......|+|++.+++++++.+.++|++|+|..|.+.
T Consensus 566 ~~~~~~~--rnF~nKlWNa~Rfv~~~~~~-----~~~-~~~~~-~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ 636 (877)
T COG0525 566 EKRVEGY--RNFLNKLWNATRFVLMNLDD-----LGP-DDLDL-LALSLADRWILSRLNETVKEVTEALDNYRFDEAARA 636 (877)
T ss_pred HHHHHHH--HHHHHHHHhHHHHHHhcccc-----cCc-ccccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999986 78999999999988764432 111 01100 122578999999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 475 AMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 475 i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
+.+|+. .|+.|++..||-.... ++...++.+++..++..+..||+||||+++|+||+.|...
T Consensus 637 ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 637 LYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred HHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC
Confidence 999996 4999999999865433 4445578899999999999999999999999999999763
No 22
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=6e-76 Score=722.51 Aligned_cols=510 Identities=18% Similarity=0.230 Sum_probs=407.2
Q ss_pred CCCCCCCCCC------CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHH-
Q 003611 9 PAAPPPKLPI------PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM- 81 (807)
Q Consensus 9 ~~~~~~~~~~------~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~- 81 (807)
|.+...|.+. .++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||++++...+
T Consensus 41 W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~-~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~ 119 (995)
T PTZ00419 41 WEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTG-AIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEK 119 (995)
T ss_pred HHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHH-HHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHH
Confidence 5555555442 356789999999999999999999995 56999999999999999999999999999965543
Q ss_pred ----HcCCCH------------HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeee
Q 003611 82 ----EDNCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143 (807)
Q Consensus 82 ----~~g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~ 143 (807)
+.|+++ .++++++.+.++++|++||+++| ++++|+++.|.+.|+++|.+|+++|+||++.+.
T Consensus 120 ~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~ 199 (995)
T PTZ00419 120 KLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRL 199 (995)
T ss_pred HHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccee
Confidence 345553 46789999999999999999998 788999999999999999999999999999999
Q ss_pred eeecCCCCccccccccc---------------------cc---------------------CCCC--CCCC---------
Q 003611 144 QPYCDTCKRFLADRLVE---------------------GT---------------------CPFE--GCNY--------- 170 (807)
Q Consensus 144 ~~y~~~~~~~l~d~~v~---------------------g~---------------------cp~~--~c~~--------- 170 (807)
++|||.|+|.|+|.+|+ |. .|.. ||.+
T Consensus 200 V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~ 279 (995)
T PTZ00419 200 VNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDER 279 (995)
T ss_pred eecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcH
Confidence 99999999999998876 20 0110 0000
Q ss_pred ----------------------------CCCCCcch---------------------------------hccCCC-----
Q 003611 171 ----------------------------ESARGDQC---------------------------------ENCGKL----- 184 (807)
Q Consensus 171 ----------------------------~~~~g~~c---------------------------------e~cG~~----- 184 (807)
...+|..| +++|..
T Consensus 280 y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~ 359 (995)
T PTZ00419 280 YKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHR 359 (995)
T ss_pred HHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCH
Confidence 00001111 111110
Q ss_pred -----------------C--CccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 003611 185 -----------------L--NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW 245 (807)
Q Consensus 185 -----------------l--~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (807)
+ .......|+|||||++++.+.++|||++++.+++.+.+++++.+.. ..|....+.+.+|
T Consensus 360 ~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~-~~P~~~~~~~~~w 438 (995)
T PTZ00419 360 FDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELK-IIPSSHENVWYHW 438 (995)
T ss_pred HHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeE-EEChHHHHHHHHH
Confidence 0 0001235899999999999999999999999999999999754421 2456677888999
Q ss_pred HHcCccceeeeeccCCCCccCcccc-------------------------------------------CCcEEEEEeccc
Q 003611 246 LKEGLKVRCITRDLKWGVPVPLERF-------------------------------------------KEKVFYVWFDAP 282 (807)
Q Consensus 246 l~~gl~d~~ISR~~~WGipvP~~~~-------------------------------------------~~~viyVWfDA~ 282 (807)
|.+ ++|||||||+.||+|||.|.+ +.+|+||||||.
T Consensus 439 l~~-l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~ 517 (995)
T PTZ00419 439 LEN-IQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSG 517 (995)
T ss_pred Hhc-cccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCC
Confidence 986 999999999999999998732 138999999999
Q ss_pred chhhhcccCCch---hHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCC---cccCeEEEeeceee-cCCCccc
Q 003611 283 IGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLN-YESGKFS 355 (807)
Q Consensus 283 ~~yis~~~~~~~---~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~---~~~p~~i~~hg~l~-~~G~KMS 355 (807)
+.|++.+ +|+. +++.|| |.| +++.|+||++| |+|.++++++. ..|++.+++||++. .+|+|||
T Consensus 518 l~p~~~~-g~p~~~~~~~~~~--P~d---~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMS 587 (995)
T PTZ00419 518 LFPFSTL-GWPDQTDDLQRFF--PTS---LLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMS 587 (995)
T ss_pred HHHHHHh-CCCCChHHHhhcC--CCc---EEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcc
Confidence 9998765 6753 577788 667 89999999985 77766554431 13458999999998 4999999
Q ss_pred cccCCccChhhhhhc------------------------------------CCCchhHHHHHHhcCCCCCCccccHHHHH
Q 003611 356 KSKGIGVFGNDAKDT------------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQ 399 (807)
Q Consensus 356 KS~GN~I~~~d~l~~------------------------------------~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~ 399 (807)
||+||||+|.++++. .||+|++||||++.++.++|++|+.+.+.
T Consensus 588 KSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~ 667 (995)
T PTZ00419 588 KSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVV 667 (995)
T ss_pred cCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHH
Confidence 999999999999871 49999999999998888999999999988
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCc---CCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 003611 400 AKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI---VPD-ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475 (807)
Q Consensus 400 ~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~---ip~-~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i 475 (807)
.. ++++|+|+|+++|++.++.. ...+. .+. .........|+|+++.++.+.+.+.++|++|+|+.|++.+
T Consensus 668 ~~--~~f~nklwN~~rf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i 741 (995)
T PTZ00419 668 GY--RHFCNKLWNAVKFALMKLLK----DFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQAT 741 (995)
T ss_pred HH--HHHHHHHHHHHHHHHhcccc----cccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 54 78999999999998876553 11111 000 0001234579999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 476 MSIS--SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 476 ~~l~--~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
++|+ ..+|+|++..+||.....+.++...+.+++.++++.+++||+|||||+|++||++|+.
T Consensus 742 ~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 742 YNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred HHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 9974 5699999999999732234444566788899999999999999999999999999974
No 23
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-75 Score=712.81 Aligned_cols=492 Identities=18% Similarity=0.208 Sum_probs=392.6
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcC----CC--------
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDN----CS-------- 86 (807)
Q Consensus 19 ~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g----~~-------- 86 (807)
.++++|+|++|||||||.||||||++. +.+|+++||+||+||+|.|++|||+||+|||.+++++. +.
T Consensus 51 ~~~~~f~l~dgPPyanG~lHiGHaln~-~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~ 129 (961)
T PRK13804 51 KGRPKFVLHDGPPYANGNIHIGHALNK-ILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAE 129 (961)
T ss_pred CCCCcEEEeCCCCCCCCCccHHHHHHH-HHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHH
Confidence 467789999999999999999999996 55999999999999999999999999999999887653 32
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccccc
Q 003611 87 ----PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (807)
Q Consensus 87 ----p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (807)
++++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++..+++||+.|+|.|+|.+|+
T Consensus 130 f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Eve 209 (961)
T PRK13804 130 FRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIE 209 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcc
Confidence 345888999999999999999866 77899999999999999999999999999999999999999999997775
Q ss_pred cc-----------------------C--------CCC--CC----------------CC---------------------
Q 003611 161 GT-----------------------C--------PFE--GC----------------NY--------------------- 170 (807)
Q Consensus 161 g~-----------------------c--------p~~--~c----------------~~--------------------- 170 (807)
.. + |+. ++ +.
T Consensus 210 y~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~ 289 (961)
T PRK13804 210 YHDIESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAE 289 (961)
T ss_pred cccccCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHH
Confidence 20 0 110 00 00
Q ss_pred -----------C--------------------CC-----C-------------Cc---------------chhccCC---
Q 003611 171 -----------E--------------------SA-----R-------------GD---------------QCENCGK--- 183 (807)
Q Consensus 171 -----------~--------------------~~-----~-------------g~---------------~ce~cG~--- 183 (807)
. +. . |. .|..-|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~ 369 (961)
T PRK13804 290 SVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEI 369 (961)
T ss_pred HHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcc
Confidence 0 00 0 00 0000011
Q ss_pred ---------CCC--c-----------------------------------cc--cCCCccccCCCceEEeeecceeEecc
Q 003611 184 ---------LLN--A-----------------------------------TD--LKDPKCKVCRNAPQIRDTNHLFLDLP 215 (807)
Q Consensus 184 ---------~l~--~-----------------------------------~e--l~~p~c~~~g~~~~~~~~~~~f~~l~ 215 (807)
+.+ + .+ ...|+|||||++++++.++|||++++
T Consensus 370 ~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~ 449 (961)
T PRK13804 370 PVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMD 449 (961)
T ss_pred cccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcC
Confidence 000 0 00 13589999999999999999999999
Q ss_pred c-------hHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCcccc------------------
Q 003611 216 A-------LRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF------------------ 270 (807)
Q Consensus 216 ~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~------------------ 270 (807)
. +++.+++.+++..+. |...++.+.+||.+ ++|||||||+.||+|||.|.+
T Consensus 450 ~~~~~~~~~k~~al~~i~~v~~~---P~~~~~r~~~~i~~-~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~ 525 (961)
T PRK13804 450 KDLGDGTTLRSRALDAIDKTRFV---PAAGQNRLYNMIED-RPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADA 525 (961)
T ss_pred CcccchHHHHHHHHHHHhccEEE---CHHHHHHHHHHHhc-CccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHH
Confidence 8 999999999887654 44556788999976 899999999999999998532
Q ss_pred ------------------------------CCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEecccc--
Q 003611 271 ------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVP-- 318 (807)
Q Consensus 271 ------------------------------~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~-- 318 (807)
+.+|++||||+.+.+.... ....++ +| |+| +|++|+||++
T Consensus 526 ~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~-~~~~~~--~~--PaD---~~~eG~Di~rgW 597 (961)
T PRK13804 526 FEEEGADAWFAEGAKERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVL-EDRPDL--KW--PAD---LYLEGSDQHRGW 597 (961)
T ss_pred HHhcCCccccccCHHHhcCcccCcccceEecCcceeeeecCCCCccccc-cCCccc--CC--Cce---EEEEEcccccHH
Confidence 1268999999976654322 111222 46 677 8999999995
Q ss_pred chhchHHHHhhhCCC-CcccCeEEEeeceeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHH
Q 003611 319 FHTVMFPSTLLGTGE-NWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 396 (807)
Q Consensus 319 fH~i~~pa~l~a~~~-~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~ 396 (807)
||+. +|++... +..||++|++|||++. +|+|||||+||+|+|.++++ .||+|++|||+++ .++++|++||++
T Consensus 598 F~s~----ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~-~yGaD~lRl~lls-~~~~~D~~fs~~ 671 (961)
T PRK13804 598 FNSS----LLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK-QSGADILRLWVAS-VDYSDDQRIGKE 671 (961)
T ss_pred HHHH----HHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-hcCHHHHHHHHHh-CCCCCCcccCHH
Confidence 9984 4444432 1247799999999985 99999999999999999999 7999999999997 678999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCc-CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 003611 397 DLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSI-VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA 475 (807)
Q Consensus 397 ~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~-ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i 475 (807)
.+... ++++++|+|+++++++.+.. ...+. .+.. .....+|+|+++.++.+.+++.++|++|+|++|++.+
T Consensus 672 ~l~~~--~~~~~kL~N~~rf~l~nl~~----~~~~~~~~~~--~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l 743 (961)
T PRK13804 672 ILKQV--SETYRKLRNTLRWLLGNLAH----FDPGEDVVAY--ADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKAL 743 (961)
T ss_pred HHHHH--HHHHHHHHHHHHHHHhcccc----CCcccccCCh--hhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 98764 78999999999888776654 11111 1111 1234579999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHhhcchhhccC-ChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 476 MSIS--SEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 476 ~~l~--~~~N~yi~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
++|+ ..+|.|++..+||..... +.....++..++..+++.+++||+||||++|++||++|+.
T Consensus 744 ~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~ 808 (961)
T PRK13804 744 VNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYP 808 (961)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhccc
Confidence 9999 358999999999955432 3333455677888889999999999999999999999983
No 24
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=4.3e-75 Score=708.21 Aligned_cols=493 Identities=19% Similarity=0.258 Sum_probs=395.8
Q ss_pred CCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---
Q 003611 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED--- 83 (807)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~--- 83 (807)
.|++...|.+.. ++++|+||+||||+||.|||||+++. +.+|+++||+||+|++|+|.+|||+||+||+..|++.
T Consensus 10 ~W~~~~~fe~~~~~~~kf~i~~ppPy~nG~lH~GH~~~~-~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~ 88 (938)
T TIGR00395 10 RWEEAHIFEADPDDREKFFLTMAYPYLNGVMHAGHCRTF-TIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRR 88 (938)
T ss_pred HHHhCCCcccCCCCCCceEEecCCCCCCCCcccchhhhh-hHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhh
Confidence 366666676643 56789999999999999999999985 5699999999999999999999999999999888772
Q ss_pred ------------C---------CCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeee
Q 003611 84 ------------N---------CSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140 (807)
Q Consensus 84 ------------g---------~~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~ 140 (807)
+ .+|.++++++...++++|++||+++| +.+.|++|.|.+.|+++|.+|+++|+||++
T Consensus 89 ~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g 168 (938)
T TIGR00395 89 DELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKG 168 (938)
T ss_pred hhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecC
Confidence 1 45788999999999999999999998 456799999999999999999999999999
Q ss_pred eeeeeecCCCCcccccccccc-c--------------------------CCCC--CCC-----CCCC-------------
Q 003611 141 TMQQPYCDTCKRFLADRLVEG-T--------------------------CPFE--GCN-----YESA------------- 173 (807)
Q Consensus 141 ~~~~~y~~~~~~~l~d~~v~g-~--------------------------cp~~--~c~-----~~~~------------- 173 (807)
.+.++|||.|++.++|.++.+ . .|.. ||. -+..
T Consensus 169 ~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~ 248 (938)
T TIGR00395 169 EHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWIT 248 (938)
T ss_pred CeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEE
Confidence 999999999999999987741 0 1110 000 0000
Q ss_pred ---------------------------------------------------CCc--------------------------
Q 003611 174 ---------------------------------------------------RGD-------------------------- 176 (807)
Q Consensus 174 ---------------------------------------------------~g~-------------------------- 176 (807)
.|.
T Consensus 249 s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~ 328 (938)
T TIGR00395 249 SKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEY 328 (938)
T ss_pred eHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchh
Confidence 000
Q ss_pred -----------------------c-----hhc-------------------------cCCCCCc----------------
Q 003611 177 -----------------------Q-----CEN-------------------------CGKLLNA---------------- 187 (807)
Q Consensus 177 -----------------------~-----ce~-------------------------cG~~l~~---------------- 187 (807)
. |+. -|.+...
T Consensus 329 ~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i 408 (938)
T TIGR00395 329 LGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKV 408 (938)
T ss_pred cCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHH
Confidence 0 000 0111000
Q ss_pred -------------ccc-CCCccccCCCceEEe-eecceeEecc--chHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCc
Q 003611 188 -------------TDL-KDPKCKVCRNAPQIR-DTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGL 250 (807)
Q Consensus 188 -------------~el-~~p~c~~~g~~~~~~-~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl 250 (807)
.+. ..|+|+|||++++++ .++|||++++ .|++.+.++++++.. +|+..++.+.+||+. |
T Consensus 409 ~~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~---~P~~~~~~~~~~l~~-l 484 (938)
T TIGR00395 409 KADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRI---IPEEVKNAFEGKIDW-L 484 (938)
T ss_pred HHHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEE---eCHHHHHHHHHHHhh-h
Confidence 112 347899999999998 9999999999 599999999987643 577788899999985 9
Q ss_pred cceeeeeccCCCCccCccc------cCCcEEEEEecccchhhhccc------------------------CCc-------
Q 003611 251 KVRCITRDLKWGVPVPLER------FKEKVFYVWFDAPIGYVSITS------------------------CYT------- 293 (807)
Q Consensus 251 ~d~~ISR~~~WGipvP~~~------~~~~viyVWfDA~~~yis~~~------------------------~~~------- 293 (807)
+|||||||+.||+|+|++. .+++++|+||+++.+|++... +++
T Consensus 485 ~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~ 564 (938)
T TIGR00395 485 KDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKL 564 (938)
T ss_pred hhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHH
Confidence 9999999999999999632 236899999999998875421 011
Q ss_pred -hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCC-cccCeEEEeeceeecCCCccccccCCccChhhhhhcC
Q 003611 294 -NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTN 371 (807)
Q Consensus 294 -~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~-~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~ 371 (807)
++|+.|| |.| +|++|+||++||+++|. +++++..+ .++|+.|++|||++.+|+|||||+||+|+|.++++ .
T Consensus 565 ~~ef~~~y--P~D---~~~~GkDii~~H~~~~i-~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~-~ 637 (938)
T TIGR00395 565 RREFEYWY--PLD---WRISGKDLIPNHLTFYI-FHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVE-K 637 (938)
T ss_pred HHHHhhcC--Cce---EEEEeeccccchHHHHH-HHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHH-H
Confidence 2467778 667 89999999999999994 44444332 23579999999999999999999999999999999 6
Q ss_pred CCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHH
Q 003611 372 IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEK 451 (807)
Q Consensus 372 ~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~ 451 (807)
||+|++||||++.+++++|++|+++.+.+..|. +++++|+++|+..... +... ......|+|+++.
T Consensus 638 yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~--l~~l~n~~~~~~~~~~--------~~~~----~~~~~~D~wlls~ 703 (938)
T TIGR00395 638 FGADVARLYIADAAETVQDADWKESEVEGTILR--LERLYEFAEEITKESN--------LETG----EETSFIDRWLESR 703 (938)
T ss_pred cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH--HHHHHHHHHHHHhhcc--------cCCC----ccCChHHHHHHHH
Confidence 999999999999889999999999999998654 7899999998764321 1111 0123568999999
Q ss_pred HHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Q 003611 452 VGKYVEQYLEAMEKVKLKQGL-KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVE 530 (807)
Q Consensus 452 l~~~~~~~~~~~e~~~~~~al-~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~ 530 (807)
++.+.+++.++|++|+|++|+ ..+++|+..+|.|+...+ .+.. .++.++++.+++||+|||||+|++
T Consensus 704 l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~---------~~~~---~~l~~~l~~~~~LLaP~~P~~aEe 771 (938)
T TIGR00395 704 MNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGG---------VNHK---DVLARYLETWIKLLAPFAPHFAEE 771 (938)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCc---------chHH---HHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999 678899999999976432 1122 357788999999999999999999
Q ss_pred HHHHhCCC
Q 003611 531 VNKQLNLQ 538 (807)
Q Consensus 531 i~~~Lg~~ 538 (807)
||++||.+
T Consensus 772 iw~~Lg~~ 779 (938)
T TIGR00395 772 MWEEVGNE 779 (938)
T ss_pred HHHHcCCC
Confidence 99999853
No 25
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1e-74 Score=706.93 Aligned_cols=508 Identities=16% Similarity=0.209 Sum_probs=401.3
Q ss_pred CCCCCCCCCC--CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----
Q 003611 9 PAAPPPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME---- 82 (807)
Q Consensus 9 ~~~~~~~~~~--~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~---- 82 (807)
|.....|.+. .++++|+|++|||||||.|||||+++. +.+|+++||+||+||+|+|++|||+||+|++.++++
T Consensus 113 W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~-ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~ 191 (1066)
T PLN02381 113 WEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTA-AIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMR 191 (1066)
T ss_pred HHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHH-HHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHh
Confidence 5555666553 456789999999999999999999996 559999999999999999999999999999999875
Q ss_pred -cCCCH------------HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeec
Q 003611 83 -DNCSP------------KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYC 147 (807)
Q Consensus 83 -~g~~p------------~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~ 147 (807)
.|+++ .++++++...++++|++||+++| +.+.|+++.|.+.|+++|.+|+++|+||++.+.++||
T Consensus 192 ~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWc 271 (1066)
T PLN02381 192 ERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWD 271 (1066)
T ss_pred hcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCC
Confidence 36543 37789999999999999999988 5567999999999999999999999999999999999
Q ss_pred CCCCcccccccccccC--------------------------C---------------C--CCCCC-----C--------
Q 003611 148 DTCKRFLADRLVEGTC--------------------------P---------------F--EGCNY-----E-------- 171 (807)
Q Consensus 148 ~~~~~~l~d~~v~g~c--------------------------p---------------~--~~c~~-----~-------- 171 (807)
|.|+|.|+|.+|+.+- | . .||.+ +
T Consensus 272 P~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~ 351 (1066)
T PLN02381 272 CTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLH 351 (1066)
T ss_pred CCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhC
Confidence 9999999998664110 0 0 00100 0
Q ss_pred -----------------CC------C---------------------------------CcchhccCCCC----------
Q 003611 172 -----------------SA------R---------------------------------GDQCENCGKLL---------- 185 (807)
Q Consensus 172 -----------------~~------~---------------------------------g~~ce~cG~~l---------- 185 (807)
+. + |...+.||..+
T Consensus 352 G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~ 431 (1066)
T PLN02381 352 GKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAARE 431 (1066)
T ss_pred CCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHH
Confidence 00 1 11111222101
Q ss_pred ---------------CccccCCCccccCCCceEEeeecceeEeccchHHHHHHHH-----HcCCCCCCCChHHHHHHHHH
Q 003611 186 ---------------NATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYI-----NNMSVAGSWSQNAIQATHAW 245 (807)
Q Consensus 186 ---------------~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~ 245 (807)
...+...|+||||+++++.+.++|||++++.+++.+.+.+ ++..+ .|....+...+|
T Consensus 432 ~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~---~P~~~~~~~~~w 508 (1066)
T PLN02381 432 AVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEF---IPKQYLAEWKRW 508 (1066)
T ss_pred HHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEE---EChHHHHHHHHH
Confidence 1112246999999999999999999999999999999988 22222 255567788999
Q ss_pred HHcCccceeeeeccCCCCccCcccc-------------------------------------------CCcEEEEEeccc
Q 003611 246 LKEGLKVRCITRDLKWGVPVPLERF-------------------------------------------KEKVFYVWFDAP 282 (807)
Q Consensus 246 l~~gl~d~~ISR~~~WGipvP~~~~-------------------------------------------~~~viyVWfDA~ 282 (807)
|.+ ++|||||||+.||+|||.|.+ +.+|+|+|||+.
T Consensus 509 l~n-~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg 587 (1066)
T PLN02381 509 LEN-IRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSG 587 (1066)
T ss_pred Hhc-CccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCC
Confidence 986 999999999999999998853 126899999999
Q ss_pred chhhhcccCCch---hHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCcccccc
Q 003611 283 IGYVSITSCYTN---EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSK 358 (807)
Q Consensus 283 ~~yis~~~~~~~---~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~ 358 (807)
+.+++.+ +|+. +++.|| |.| +.+.|.||++|+-.....+.+++... .|++.|+.|||++ .+|+|||||+
T Consensus 588 ~~p~~~l-g~P~~~~~~~~~~--P~d---~~~~G~Dii~~W~~rmi~~~~~~~~~-~PFk~v~~hG~V~D~~G~KMSKS~ 660 (1066)
T PLN02381 588 LFPLSVL-GWPDDTDDLKAFY--PTS---VLETGHDILFFWVARMVMMGMQLGGD-VPFRKVYLHPMIRDAHGRKMSKSL 660 (1066)
T ss_pred chHHHHh-cCCCCHHHHhccC--CCe---eeeecchhhhhHHHHHHHHHHHhCCC-CchHHheecceEECCCCCCCCCCC
Confidence 9987765 6653 466667 677 68899999988654433333333322 5789999999987 7999999999
Q ss_pred CCccChhhhhhc------------------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHH
Q 003611 359 GIGVFGNDAKDT------------------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (807)
Q Consensus 359 GN~I~~~d~l~~------------------------------------~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~ 402 (807)
||||+|.++++. .||+|+|||||++..+.++|++|+.+.+...
T Consensus 661 GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~- 739 (1066)
T PLN02381 661 GNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGY- 739 (1066)
T ss_pred CCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHH-
Confidence 999999999872 3899999999999888899999999998854
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCCCCCCCC--cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-
Q 003611 403 NNELLNNLGNFINRVLSFIAKPPGQGYGS--IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS- 479 (807)
Q Consensus 403 n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g--~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~- 479 (807)
..++|+|+|++++++..+.. .+.. .++. .....+|+|+++.++.++.++.++|++|+|+.|++.+++|+
T Consensus 740 -r~f~nKlwNa~rf~~~~~~~----~~~~~~~~~~---~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~ 811 (1066)
T PLN02381 740 -RQWCNKLWNAVRFAMSKLGD----DYTPPATLSV---ETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQ 811 (1066)
T ss_pred -HHHHHHHHHHHHHHHhhccc----ccCcccccCc---cccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78999999999977643321 1111 0111 12345799999999999999999999999999999999985
Q ss_pred -HHHHHHHHhhcchhhccCC--hHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 480 -SEGNAYLQESQFWKLYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 480 -~~~N~yi~~~~pw~l~k~~--~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
..+|.|++..+||...+.. ......+..++..++..+.+||+|||||+|++||+.|+.
T Consensus 812 ~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~ 872 (1066)
T PLN02381 812 YQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQ 872 (1066)
T ss_pred HHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhh
Confidence 5699999999999765321 122344566778888899999999999999999999963
No 26
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.3e-74 Score=703.06 Aligned_cols=502 Identities=17% Similarity=0.225 Sum_probs=396.6
Q ss_pred CCCCCCCCCC---CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc--
Q 003611 9 PAAPPPKLPI---PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-- 83 (807)
Q Consensus 9 ~~~~~~~~~~---~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-- 83 (807)
|.+...+.+. ..+++|+|++|||||||.||||||++.+ .+|+++||+||+|++|.|++|||+||+||+.+++++
T Consensus 16 W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~-lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~ 94 (974)
T PLN02843 16 WEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKI-LKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLD 94 (974)
T ss_pred HHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHH-HHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhc
Confidence 4444544432 2345699999999999999999999965 599999999999999999999999999999988543
Q ss_pred -----CCCHHH-------HHHHHHHHHHHHHhhcCccc--ccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCC
Q 003611 84 -----NCSPKE-------ICDKYHVIHKDVYKWFDISF--DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDT 149 (807)
Q Consensus 84 -----g~~p~e-------~~~~~~~~~~~~~~~lgI~~--D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~ 149 (807)
+++|.+ +++++.+.++++|++||++. |+.++|+++.|.+.++++|.+|+++|+||++.++++||++
T Consensus 95 ~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~ 174 (974)
T PLN02843 95 QEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPS 174 (974)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCC
Confidence 345544 57788888999999999955 5888999999999999999999999999999999999999
Q ss_pred CCccccccccccc----CCC-------C------------------------------C----------------CC---
Q 003611 150 CKRFLADRLVEGT----CPF-------E------------------------------G----------------CN--- 169 (807)
Q Consensus 150 ~~~~l~d~~v~g~----cp~-------~------------------------------~----------------c~--- 169 (807)
|++.|+|.+|+.. .|. . + ++
T Consensus 175 ~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~ 254 (974)
T PLN02843 175 SRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFS 254 (974)
T ss_pred CCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEecccc
Confidence 9999999877631 110 0 0 00
Q ss_pred ----------------------------C-----------------------CC--------------------------
Q 003611 170 ----------------------------Y-----------------------ES-------------------------- 172 (807)
Q Consensus 170 ----------------------------~-----------------------~~-------------------------- 172 (807)
+ .+
T Consensus 255 ~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~ 334 (974)
T PLN02843 255 EDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITT 334 (974)
T ss_pred ccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCC
Confidence 0 00
Q ss_pred ---------------------------------CCCcchhcc----CCC-C-Ccc-------------------ccCCCc
Q 003611 173 ---------------------------------ARGDQCENC----GKL-L-NAT-------------------DLKDPK 194 (807)
Q Consensus 173 ---------------------------------~~g~~ce~c----G~~-l-~~~-------------------el~~p~ 194 (807)
.+|...+.+ |.. + +.. ....|+
T Consensus 335 ~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~ 414 (974)
T PLN02843 335 ESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPY 414 (974)
T ss_pred CCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCc
Confidence 000000111 110 0 110 113599
Q ss_pred cccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCcccc----
Q 003611 195 CKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF---- 270 (807)
Q Consensus 195 c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~---- 270 (807)
||||+++++.+.++|||++++.+++++++.+++..+.|. ...+.+.+||.+ ++|||||||+.||+|||.+.+
T Consensus 415 cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~---~~~~r~~~~i~~-~~DWcISRQr~WG~pIP~~~~~~~~ 490 (974)
T PLN02843 415 DWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPA---QGENRIRAMVSG-RSDWCISRQRTWGVPIPVFYHVETK 490 (974)
T ss_pred cCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEECh---HHHHHHHHHHhc-CcceeeeeccccccEEEEEEEcCCC
Confidence 999999999999999999999999999999988776544 456778999986 899999999999999996522
Q ss_pred ----------------------------------------------CCcEEEEEecccchhhhcccCCchhHhhhcCCCC
Q 003611 271 ----------------------------------------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPE 304 (807)
Q Consensus 271 ----------------------------------------------~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~ 304 (807)
+.+|+|||||+.+.+.+.. +.. .+.+| |+
T Consensus 491 ~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~-~~~--~~~~~--Pa 565 (974)
T PLN02843 491 EPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVL-GSR--EGLSY--PA 565 (974)
T ss_pred CEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHh-ccc--cccCC--Cc
Confidence 1268999999988776543 111 23357 66
Q ss_pred CcceEEEEEecccc--chhchHHHHhhhCCCCcccCeEEEeeceeec-CCCccccccCCccChhhhhhc--------CCC
Q 003611 305 NVELYQFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDT--------NIP 373 (807)
Q Consensus 305 d~~~ih~iGkDii~--fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~--------~~~ 373 (807)
| +|+.|+||++ ||+.+|+++. +.|. .|++++++|||++. +|+|||||+||+|+|.++++. .||
T Consensus 566 D---l~~eG~Di~rgWf~s~l~~~~~-~~g~--~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yG 639 (974)
T PLN02843 566 D---LYLEGSDQHRGWFQSSLLTSVA-TKGK--APYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYG 639 (974)
T ss_pred e---eeeeeccccchHHHHHHHHHHH-hcCC--CccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccC
Confidence 7 8999999998 9999998873 3454 47899999999875 899999999999999999972 399
Q ss_pred chhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCC--CcCCCCCCCCChHHHHHHHHH
Q 003611 374 VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYG--SIVPDANGAESHQLTKTLAEK 451 (807)
Q Consensus 374 ~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~--g~ip~~~~~~~~~~d~~l~~~ 451 (807)
+|+||||+++ ..+++|++|+.+.+.+. ++.+++|+|.++++++.+.. ++ ..++. .....+|+|+++.
T Consensus 640 aD~lR~~l~~-~~~~~d~~~s~~~l~~~--~~~~~kl~n~~rf~lgnl~~-----~~~~~~~~~---~~~~~~D~wiLsk 708 (974)
T PLN02843 640 ADVLRLWVAS-VDYTGDVLIGPQILKQM--SDIYRKLRGTLRYLLGNLHD-----WKPDNAVPY---EDLPSIDKYALFQ 708 (974)
T ss_pred hHHHHHHHHh-cccCCCceeCHHHHHHH--HHHHHHHHHHHHHHHhCccC-----CCcccccCc---cccCHHHHHHHHH
Confidence 9999999997 77899999999998876 67889999999987764433 21 11111 1234579999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHHHHHhhcchhhccC-ChHHHHHHHHHHHHHHHHHHHhccccchHHH
Q 003611 452 VGKYVEQYLEAMEKVKLKQGLKTAMSI--SSEGNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFS 528 (807)
Q Consensus 452 l~~~~~~~~~~~e~~~~~~al~~i~~l--~~~~N~yi~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a 528 (807)
++.+.+++.++|++|+|++|++.+++| ...+|.||+..+||.+.+. +......+..++..++..+++||+||||++|
T Consensus 709 L~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~a 788 (974)
T PLN02843 709 LENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLA 788 (974)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999999999999999988 4589999999999987643 3322334455566777888999999999999
Q ss_pred HHHHHHhCC
Q 003611 529 VEVNKQLNL 537 (807)
Q Consensus 529 ~~i~~~Lg~ 537 (807)
++||++|+.
T Consensus 789 EEiw~~L~~ 797 (974)
T PLN02843 789 EDAWQNLPF 797 (974)
T ss_pred HHHHHhccc
Confidence 999999985
No 27
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.9e-75 Score=636.03 Aligned_cols=316 Identities=48% Similarity=0.895 Sum_probs=290.3
Q ss_pred cEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003611 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (807)
Q Consensus 23 ~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 102 (807)
+++||+|+|||||.|||||+++. +.+|+++||+|++|++|+|++|+||||+||+.+|+++|++|+++|+.+++.|++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~-~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGT-VLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHH-HHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999996 56899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccC
Q 003611 103 KWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCG 182 (807)
Q Consensus 103 ~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG 182 (807)
++|||++|.|++|+++.|...|+++|++|.++|++|++.+.++||+.|++||+
T Consensus 80 ~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------------------------- 132 (319)
T cd00814 80 KWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------------------------- 132 (319)
T ss_pred HHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------------------------
Confidence 99999999999999999999999999999999999999999999999998865
Q ss_pred CCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeecc-CC
Q 003611 183 KLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL-KW 261 (807)
Q Consensus 183 ~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~-~W 261 (807)
+.++++||||+|++|++.|++++++.+. ..||++.++.+.+||.++++||||||++ .|
T Consensus 133 --------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~-~~~p~~~~~~~~~~l~~~l~d~~isR~~~~W 191 (319)
T cd00814 133 --------------------EWREEEHYFFRLSKFQDRLLEWLEKNPD-FIWPENARNEVLSWLKEGLKDLSITRDLFDW 191 (319)
T ss_pred --------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCc-cCCCHHHHHHHHHHHhCCCcccCCCccCccc
Confidence 4678899999999999999999988753 2589999999999999999999999999 99
Q ss_pred CCccCccccCCcEEEEEecccchhhhcccCCchhHh--hhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCe
Q 003611 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWE--QWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK 339 (807)
Q Consensus 262 GipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~--~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~ 339 (807)
|||+|.+ +++++||||||+++|++++..+..... .||.. .+..++||+|+||++||+++||||+++++. ++|+
T Consensus 192 Gipvp~~--~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~-~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~--~~~~ 266 (319)
T cd00814 192 GIPVPLD--PGKVIYVWFDALIGYISATGYYNEEWGNSWWWKD-GWPELVHFIGKDIIRFHAIYWPAMLLGAGL--PLPT 266 (319)
T ss_pred CeeCCCC--CCcEEEEehhhHHHHHHHcccccccccchhhhhc-CCCceEEEEeechhhhhHHHHHHHHHhCCC--CCCc
Confidence 9999986 799999999999999998744332110 23322 233459999999999999999999999985 5899
Q ss_pred EEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003611 340 TISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (807)
Q Consensus 340 ~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~F 393 (807)
.+++|||++++|+|||||+||+|++.|+++ .|++|++||||++.+|+++|.||
T Consensus 267 ~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~-~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 267 RIVAHGYLTVEGKKMSKSRGNVVDPDDLLE-RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred EeeeeeeEEECCeeecccCCcccCHHHHHH-HcCchHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999 69999999999999999999998
No 28
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-75 Score=679.08 Aligned_cols=497 Identities=23% Similarity=0.337 Sum_probs=401.1
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CC------------
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC------------ 85 (807)
Q Consensus 19 ~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~------------ 85 (807)
.|++.|++.++|||+||.||||||.+.+| +|++.||+.|+||+|.+++||||||+|||.+++++ |+
T Consensus 46 ~g~~~FvfhDGPPyANG~iHiGHalnKil-KDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~e 124 (933)
T COG0060 46 KGKPKFVLHDGPPYANGNIHIGHALNKIL-KDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEE 124 (933)
T ss_pred CCCCcEEEeCCCCCCCCCcchhhhHHHhh-hhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHH
Confidence 57889999999999999999999999865 99999999999999999999999999999888764 42
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccccc
Q 003611 86 ---SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160 (807)
Q Consensus 86 ---~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~ 160 (807)
.++++|.++.+.++++|++||+..| +-|.|+++.|++.+.++|.+|+++|+||++..+++||++|++.|++.+|+
T Consensus 125 fr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEve 204 (933)
T COG0060 125 FREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVE 204 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhc
Confidence 2567888899999999999999665 67899999999999999999999999999999999999999999999887
Q ss_pred c-----------------------------cCCCC-------------------------------------CCCCC---
Q 003611 161 G-----------------------------TCPFE-------------------------------------GCNYE--- 171 (807)
Q Consensus 161 g-----------------------------~cp~~-------------------------------------~c~~~--- 171 (807)
. |.|+. ..+.+
T Consensus 205 y~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~ 284 (933)
T COG0060 205 YGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYE 284 (933)
T ss_pred ccccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceE
Confidence 2 22330 00000
Q ss_pred --------------------C----------------------------CCC----cchhccC-----------------
Q 003611 172 --------------------S----------------------------ARG----DQCENCG----------------- 182 (807)
Q Consensus 172 --------------------~----------------------------~~g----~~ce~cG----------------- 182 (807)
+ ++| ..|..-|
T Consensus 285 vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~ 364 (933)
T COG0060 285 VLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEE 364 (933)
T ss_pred EeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCcccccc
Confidence 0 000 0121112
Q ss_pred ------------------------CCCCccc--cCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCCh
Q 003611 183 ------------------------KLLNATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQ 236 (807)
Q Consensus 183 ------------------------~~l~~~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~ 236 (807)
.++.... ..+|+||||++|+++|.++|||++++.+++++++-+++..+.|.|-
T Consensus 365 ~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~- 443 (933)
T COG0060 365 APKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWG- 443 (933)
T ss_pred chhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhH-
Confidence 1111111 1369999999999999999999999999999998887777766665
Q ss_pred HHHHHHHHHHHcCccceeeeeccCCCCccCccccCC--------------------------------------------
Q 003611 237 NAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE-------------------------------------------- 272 (807)
Q Consensus 237 ~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~-------------------------------------------- 272 (807)
.+++.+||.+ .+||||||||.||+|+|.|.+++
T Consensus 444 --~~R~~~mve~-r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~ 520 (933)
T COG0060 444 --KNRFGNMVEN-RPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGK 520 (933)
T ss_pred --HHHHHHHHcC-CCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcc
Confidence 5677899975 99999999999999999874311
Q ss_pred ------cEEEEEecccchhhhcccCCch-hHhhhcCCCCCcceEEEEEeccc--cchhchHHHHhhhCCCCcccCeEEEe
Q 003611 273 ------KVFYVWFDAPIGYVSITSCYTN-EWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGTGENWTLMKTISV 343 (807)
Q Consensus 273 ------~viyVWfDA~~~yis~~~~~~~-~~~~~W~~p~d~~~ih~iGkDii--~fH~i~~pa~l~a~~~~~~~p~~i~~ 343 (807)
+|++||||+...+.+......+ .|..+| +| +.+.|.|+. |||+..-.+..+- | .+|++.+++
T Consensus 521 ~~~rv~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~---aD---~~lEGsDQ~RGWF~Ssl~~s~a~~-~--~aPYk~vlt 591 (933)
T COG0060 521 EYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALF---AD---FYLEGSDQTRGWFYSSLLTSTALF-G--RAPYKNVLT 591 (933)
T ss_pred eeEecCcceEEEEcCCCCcccccCCcccccCcccc---Cc---EEEEeccccchhHHHHHHHHHHHc-C--CchHHHHhh
Confidence 7999999999888765432211 122222 26 799999997 7998754433222 2 357899999
Q ss_pred eceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHh
Q 003611 344 TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIA 422 (807)
Q Consensus 344 hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~ 422 (807)
|||++ .+|+|||||+||+|+|.++++ .||+|+||+|+++ +++..|+.||++.+... ++.+++|+|.+++.+..+.
T Consensus 592 HGfvlDe~GrKMSKSlGN~v~P~~V~~-~yGADiLRLwv~s-sd~~~dl~~s~~il~~~--~~~~r~irNt~rF~l~nl~ 667 (933)
T COG0060 592 HGFVLDEKGRKMSKSLGNVVDPQDVID-KYGADILRLWVAS-SDYWEDLRFSDEILKQV--REVYRKIRNTYRFLLGNLD 667 (933)
T ss_pred cccEECCCCCCccccCCCcCCHHHHHH-hhCchheeeeeee-cCchhccccCHHHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 99976 789999999999999999999 7999999999999 55899999999997665 8899999999999888755
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHHHHhhcchhhcc-CCh
Q 003611 423 KPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS--EGNAYLQESQFWKLYK-EDQ 499 (807)
Q Consensus 423 k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~N~yi~~~~pw~l~k-~~~ 499 (807)
. |+.........+...+|+|++++++.+.+++.++|++|+|+++++.+++|+. .+|+|++..+...... .+.
T Consensus 668 ~-----fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s 742 (933)
T COG0060 668 D-----FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADS 742 (933)
T ss_pred C-----CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCC
Confidence 4 4432111111234568999999999999999999999999999999999993 5999999988754443 344
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 500 PSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 500 ~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
....++..++.+++..+..+|+||+|++||+||+.|..+
T Consensus 743 ~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~ 781 (933)
T COG0060 743 PDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGE 781 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccC
Confidence 555677888999999999999999999999999999765
No 29
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.3e-73 Score=697.52 Aligned_cols=516 Identities=16% Similarity=0.209 Sum_probs=396.0
Q ss_pred CCCCCCCCCCC----CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc
Q 003611 8 NPAAPPPKLPI----PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83 (807)
Q Consensus 8 ~~~~~~~~~~~----~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~ 83 (807)
.|.....|.+. .++++|.+++|||||||.||||||++. +.+|+++||+||+||+|.|++|||+||+||+..++++
T Consensus 84 ~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~-tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~ 162 (1205)
T PTZ00427 84 YWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAG-IIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKE 162 (1205)
T ss_pred HHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHH-HHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHH
Confidence 35555555543 356679999999999999999999995 5599999999999999999999999999999999863
Q ss_pred -CC----------------CHHHHHHHHHHHHHHHHhhcC--cccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeee
Q 003611 84 -NC----------------SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQ 144 (807)
Q Consensus 84 -g~----------------~p~e~~~~~~~~~~~~~~~lg--I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~ 144 (807)
|+ .+.+++++|.+.+++++++|| +.+|++++|+++.|.+.|+++|.+|+++|+||++.+.+
T Consensus 163 lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V 242 (1205)
T PTZ00427 163 NNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVM 242 (1205)
T ss_pred hCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceee
Confidence 32 257889999999999999999 56668999999999999999999999999999999999
Q ss_pred eecCCCCccccccccc--c---c---------------------------------------------------------
Q 003611 145 PYCDTCKRFLADRLVE--G---T--------------------------------------------------------- 162 (807)
Q Consensus 145 ~y~~~~~~~l~d~~v~--g---~--------------------------------------------------------- 162 (807)
+|||.|+|.|++.+|+ . .
T Consensus 243 ~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~ 322 (1205)
T PTZ00427 243 PYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVC 322 (1205)
T ss_pred ccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccc
Confidence 9999999999998771 0 0
Q ss_pred ------------CCCC--CCC----CC-----------------------------------------------------
Q 003611 163 ------------CPFE--GCN----YE----------------------------------------------------- 171 (807)
Q Consensus 163 ------------cp~~--~c~----~~----------------------------------------------------- 171 (807)
.|+. +|. ..
T Consensus 323 ~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y 402 (1205)
T PTZ00427 323 YAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRY 402 (1205)
T ss_pred cCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCee
Confidence 0110 000 00
Q ss_pred -C------------C--------------CCc---------------chhccCC-------CCCc---------------
Q 003611 172 -S------------A--------------RGD---------------QCENCGK-------LLNA--------------- 187 (807)
Q Consensus 172 -~------------~--------------~g~---------------~ce~cG~-------~l~~--------------- 187 (807)
. . .|. .|..-|- .+.+
T Consensus 403 ~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~ 482 (1205)
T PTZ00427 403 KPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQ 482 (1205)
T ss_pred eCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccC
Confidence 0 0 000 0111111 0000
Q ss_pred ------------------------cc--cCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHH-HH
Q 003611 188 ------------------------TD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNA-IQ 240 (807)
Q Consensus 188 ------------------------~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~-~~ 240 (807)
.+ ...|+|||||+|++++.++|||++++++++++.+..+...+.| ... .+
T Consensus 483 G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P---~~~~~~ 559 (1205)
T PTZ00427 483 NLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIP---AHIKEK 559 (1205)
T ss_pred CCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeC---chhhHh
Confidence 00 1359999999999999999999999999999888776654433 333 36
Q ss_pred HHHHHHHcCccceeeeeccCCCCccCccccCC------------------------------------------------
Q 003611 241 ATHAWLKEGLKVRCITRDLKWGVPVPLERFKE------------------------------------------------ 272 (807)
Q Consensus 241 ~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~------------------------------------------------ 272 (807)
.+.+||.+ ++|||||||+.||+|+|.|.+++
T Consensus 560 r~~~wl~n-~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r 638 (1205)
T PTZ00427 560 KFHNWIKD-AKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKR 638 (1205)
T ss_pred HHHHHHhc-CccceeeeccccCccceeEEcCCCCeEeccCCHHHHHHHhccccchhhcccccChhhccCCccccccceee
Confidence 78999986 89999999999999999775321
Q ss_pred --cEEEEEecccchhhhcccCCc-----hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCeEEEeec
Q 003611 273 --KVFYVWFDAPIGYVSITSCYT-----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTE 345 (807)
Q Consensus 273 --~viyVWfDA~~~yis~~~~~~-----~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg 345 (807)
+|+|||||+.....+. .+|+ ++|+.+| |+| +...|.||+++|-.....+..++... .|++++++||
T Consensus 639 ~~DVlD~WFdSg~~p~a~-~~~P~~~~~~~f~~~f--PaD---~i~eG~Dq~rgWf~s~l~~s~~l~~~-~PfK~VlvHG 711 (1205)
T PTZ00427 639 IPEVFDCWFESGSMPYAK-VHYPFSTEKEDFHKIF--PAD---FIAEGLDQTRGWFYTLLVISTLLFDK-APFKNLICNG 711 (1205)
T ss_pred cCceEEEEEeCCCChHHH-hCCCcccchhhHhccC--Cce---EEEEecchhccHHHHHHHHHHHhcCC-CCcceeEEcc
Confidence 2899999998877654 3664 3466777 677 78999999987654433333333322 4679999999
Q ss_pred eee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCC-CCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhC
Q 003611 346 YLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE-VSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (807)
Q Consensus 346 ~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~-~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k 423 (807)
|++ .+|+|||||+||+|+|.++++ +||+|+|||||++..+. ++|++|+++.+.+.+ +.++++++|..+++...+..
T Consensus 712 ~Vld~dG~KMSKSlGNvIDP~evI~-kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~-r~~l~klwN~~rF~~~~i~~ 789 (1205)
T PTZ00427 712 LVLASDGKKMSKRLKNYPDPLYILD-KYGADSLRLYLINSVAVRAENLKFQEKGVNEVV-KSFILPFYHSFRFFSQEVTR 789 (1205)
T ss_pred EEEcCCCCCcccCCCCCCCHHHHHH-hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHH-HHHHHHHHHHHHHHHhcccc
Confidence 998 599999999999999999999 79999999999987654 799999999987765 45667888888776553332
Q ss_pred CCCCCCCCcCCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhhcchhhccCChH
Q 003611 424 PPGQGYGSIVPD--ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISS-EGNAYLQESQFWKLYKEDQP 500 (807)
Q Consensus 424 ~~~~~~~g~ip~--~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~-~~N~yi~~~~pw~l~k~~~~ 500 (807)
.......+..+. ........+|+|+++.++.+.+.+.++|++|+|++|++.|++|+. .+|+|++..++......+.+
T Consensus 790 ~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~ 869 (1205)
T PTZ00427 790 YECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEE 869 (1205)
T ss_pred ccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcH
Confidence 000000011011 000123457999999999999999999999999999999999997 69999998875221111233
Q ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 501 SCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 501 ~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
...++++++.++|+.+++||+||||++|++||++|+.
T Consensus 870 ~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~ 906 (1205)
T PTZ00427 870 NCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRR 906 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhh
Confidence 4567889999999999999999999999999999963
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-74 Score=642.58 Aligned_cols=326 Identities=20% Similarity=0.304 Sum_probs=295.8
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---------CCCH-----
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------NCSP----- 87 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~---------g~~p----- 87 (807)
++|+||+|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+..|+++ +++|
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~-~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALN-NTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHH-HHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 47999999999999999999998 57799999999999999999999999999999999875 4554
Q ss_pred --HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccC
Q 003611 88 --KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (807)
Q Consensus 88 --~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (807)
+++++++++.|+++|++|||++| .|++|++++|.+.|+++|.+|+++|+||++.++++||+.|+++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 46899999999999999999988 8999999999999999999999999999999999999999999998643
Q ss_pred CCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHH
Q 003611 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (807)
Q Consensus 164 p~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (807)
|++||++++.+.++||||+|++|+++|++++++++.. .+|++.++.+.
T Consensus 156 -------------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~ 203 (382)
T cd00817 156 -------------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIK-FVPERMEKRYE 203 (382)
T ss_pred -------------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcE-EEChHHHHHHH
Confidence 7789999999999999999999999999999975421 36888899999
Q ss_pred HHHHcCccceeeeeccCCCCccCcccc----------------------------------CCcEEEEEecccchhhhcc
Q 003611 244 AWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------KEKVFYVWFDAPIGYVSIT 289 (807)
Q Consensus 244 ~~l~~gl~d~~ISR~~~WGipvP~~~~----------------------------------~~~viyVWfDA~~~yis~~ 289 (807)
+||++ |+||||||++.||||+|.|.+ +++|+||||||+++|++.+
T Consensus 204 ~~l~~-l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~ 282 (382)
T cd00817 204 NWLEN-IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTL 282 (382)
T ss_pred HHHhh-CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHh
Confidence 99988 999999999999999998654 3699999999999999976
Q ss_pred cCCc---hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChh
Q 003611 290 SCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGN 365 (807)
Q Consensus 290 ~~~~---~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~ 365 (807)
+|+ ++|+.|| |+| +|++|+||++||++++.++++++... .+.+.+++|||++ .+|+|||||+||+|++.
T Consensus 283 -~~~~~~~~~~~~~--p~d---~~~~G~D~~~~h~~~~l~~~~~~~g~-~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~ 355 (382)
T cd00817 283 -GWPEETKDLKKFY--PTS---LLVTGHDIIFFWVARMIMRGLKLTGK-LPFKEVYLHGLVRDEDGRKMSKSLGNVIDPL 355 (382)
T ss_pred -CCCCcchhHhhcC--CCC---eeeeecCcCchHHHHHHHHHHHhhCC-CchHHeEeeeeEECCCCCCccccCCCCCCHH
Confidence 454 3588899 567 89999999999999999988877432 2348999999998 79999999999999999
Q ss_pred hhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003611 366 DAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (807)
Q Consensus 366 d~l~~~~~~D~lR~~ll~~~~~~~D~~F 393 (807)
|+++ .||+|++|||+++.++.++|.+|
T Consensus 356 dll~-~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 356 DVID-GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHH-hcCcHHHHHHHHhCCCccCCCCC
Confidence 9999 69999999999999999999987
No 31
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=4.9e-70 Score=655.49 Aligned_cols=460 Identities=18% Similarity=0.279 Sum_probs=369.2
Q ss_pred CCCCCCCCC--CCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003611 9 PAAPPPKLP--IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (807)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (807)
|.....|.. ..++++|||+++||||||.|||||+++ ++.+|+++||+||+||+|+|++|||+||+||+.+|.++|++
T Consensus 14 W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~-~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~ 92 (842)
T TIGR00396 14 WKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRN-YTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIH 92 (842)
T ss_pred HHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHH-HHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCC
Confidence 444444433 346778999999999999999999998 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCC
Q 003611 87 PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCP 164 (807)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp 164 (807)
|.++++++++.|+++|++||+++| ++++|+++.|.+.+|++|.+|+++|+||++.+.++||+.|+++|++.+|..
T Consensus 93 p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~--- 169 (842)
T TIGR00396 93 PAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDS--- 169 (842)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhh---
Confidence 999999999999999999999886 589999999999999999999999999999999999999999999988731
Q ss_pred CCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChH-------
Q 003611 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN------- 237 (807)
Q Consensus 165 ~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~------- 237 (807)
+++|++||.+++.+..+||||++++|+++|.+++++... ||.+
T Consensus 170 ---------------------------~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~---wp~~v~~~q~~ 219 (842)
T TIGR00396 170 ---------------------------DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDH---WPESVKEMQRN 219 (842)
T ss_pred ---------------------------cCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhcc---ccHHHHHHHHh
Confidence 135889999999999999999999999988876443220 0000
Q ss_pred --------------------------------------------------------------------------------
Q 003611 238 -------------------------------------------------------------------------------- 237 (807)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (807)
T Consensus 220 wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 299 (842)
T TIGR00396 220 WIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKG 299 (842)
T ss_pred cccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003611 238 -------------------------------------------------------------------------------- 237 (807)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (807)
T Consensus 300 ~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~~~ 379 (842)
T TIGR00396 300 VFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVNSG 379 (842)
T ss_pred EecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEecch
Confidence
Q ss_pred ---------HHHHHHHHHH----------cCccceeeeeccCCCCccCccccC---------------------------
Q 003611 238 ---------AIQATHAWLK----------EGLKVRCITRDLKWGVPVPLERFK--------------------------- 271 (807)
Q Consensus 238 ---------~~~~~~~~l~----------~gl~d~~ISR~~~WGipvP~~~~~--------------------------- 271 (807)
+.+.+.++|. -.|+||||||||.||+|||.+.|+
T Consensus 380 ~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~ 459 (842)
T TIGR00396 380 EFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGN 459 (842)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCC
Confidence 0011112221 126799999999999999985421
Q ss_pred ------------------------CcEEEEEecccchhhhccc----CCc---hhHhhhcCCCCCcceEEEEEeccccch
Q 003611 272 ------------------------EKVFYVWFDAPIGYVSITS----CYT---NEWEQWWKNPENVELYQFMGKDNVPFH 320 (807)
Q Consensus 272 ------------------------~~viyVWfDA~~~yis~~~----~~~---~~~~~~W~~p~d~~~ih~iGkDii~fH 320 (807)
.+|+++|||+.+.|+..+- .++ +.++ +|. |.| +++.|.|++..|
T Consensus 460 ~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~-~~~-PvD---~yi~G~dhailH 534 (842)
T TIGR00396 460 SPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAE-YWL-PVD---LYIGGAEHAILH 534 (842)
T ss_pred CchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHh-ccC-CCc---EeeccHHHHHHH
Confidence 2688999999877764221 111 2344 444 788 799999987554
Q ss_pred h---chHHHHhhhCCC--CcccCeEEEeeceeec-----CCC---------------------------ccccccCCccC
Q 003611 321 T---VMFPSTLLGTGE--NWTLMKTISVTEYLNY-----ESG---------------------------KFSKSKGIGVF 363 (807)
Q Consensus 321 ~---i~~pa~l~a~~~--~~~~p~~i~~hg~l~~-----~G~---------------------------KMSKS~GN~I~ 363 (807)
. -+|-.+|...++ ...|++.+++|||++- +|+ |||||+||+|+
T Consensus 535 LlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~ 614 (842)
T TIGR00396 535 LLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGID 614 (842)
T ss_pred HHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCC
Confidence 3 346655554442 1247799999999875 788 99999999999
Q ss_pred hhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChH
Q 003611 364 GNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQ 443 (807)
Q Consensus 364 ~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~ 443 (807)
|.++++ .||+|++|||+++.+++++|++|+.+.+... ..++++|+|+++++...+.. +. .++. .....
T Consensus 615 p~~ii~-~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~--~~~l~kl~~~~~~~~~~~~~-----~~-~~~~---~~l~~ 682 (842)
T TIGR00396 615 PQEIVK-KHGADALRLYIMFMGPIAASLEWNDSGLEGA--RRFLDRVWNLFYNILGELDG-----KT-YLTP---TILEE 682 (842)
T ss_pred HHHHHH-HcCchHHHHHHHhcCCcCCCCccCHHHHHHH--HHHHHHHHHHHHHHHhhhcc-----cc-cCCc---ccCCH
Confidence 999999 6999999999998788999999999999876 67899999999886554322 11 0111 11235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccc
Q 003611 444 LTKTLAEKVGKYVEQYLEAMEKVK-LKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEP 522 (807)
Q Consensus 444 ~d~~l~~~l~~~~~~~~~~~e~~~-~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P 522 (807)
.|+|++.+++.+++++.++|++|+ |+.|++.+++|++...+|.. . .++.+++..+.+||+|
T Consensus 683 ~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~---------------~---~~l~~~l~~ll~lLaP 744 (842)
T TIGR00396 683 AQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKK---------------D---ALYLEYLKGFLTVLSP 744 (842)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh---------------H---HHHHHHHHHHHHHHhh
Confidence 789999999999999999999988 99999999999976554311 0 2466788999999999
Q ss_pred cchHHHHHHHHHhCC
Q 003611 523 FMPSFSVEVNKQLNL 537 (807)
Q Consensus 523 ~~P~~a~~i~~~Lg~ 537 (807)
|+||+||+||+.||.
T Consensus 745 f~PhiaEElW~~l~~ 759 (842)
T TIGR00396 745 FAPHLAEELWEKLGS 759 (842)
T ss_pred hhhHHHHHHHHHhCC
Confidence 999999999999984
No 32
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=6.8e-70 Score=653.39 Aligned_cols=457 Identities=20% Similarity=0.302 Sum_probs=366.2
Q ss_pred CCCCCCCCCC-CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCH
Q 003611 9 PAAPPPKLPI-PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP 87 (807)
Q Consensus 9 ~~~~~~~~~~-~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p 87 (807)
|.+...|.+. ..+++|||+++||||||.|||||+++ ++.+|+++||+||+|++|+|++|||+||+||+.+|+++|++|
T Consensus 18 W~~~~~f~~~~~~~~~~~i~~~pPy~nG~lHiGH~~~-~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~ 96 (805)
T PRK00390 18 WEENKTFKTTEDSSKKYYVLDMFPYPSGGLHMGHVRN-YTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHP 96 (805)
T ss_pred HHHCCCcccCccCCCCEEEEccCCCCCCCcchhhhHH-HHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCH
Confidence 4444444443 23347999999999999999999998 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCC
Q 003611 88 KEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (807)
Q Consensus 88 ~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (807)
.++++++++.|+++|++||+++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+|+
T Consensus 97 ~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~----- 171 (805)
T PRK00390 97 AEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVI----- 171 (805)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhh-----
Confidence 99999999999999999999988 68999999999999999999999999999999999999999999998774
Q ss_pred CCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC----------------
Q 003611 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS---------------- 229 (807)
Q Consensus 166 ~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~---------------- 229 (807)
+++|++||.+++.+.++||||+|++|+++|.++++...
T Consensus 172 --------------------------~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~ 225 (805)
T PRK00390 172 --------------------------DGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGR 225 (805)
T ss_pred --------------------------CCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccc
Confidence 23578899999999999999999999998888754320
Q ss_pred --C----CC---------CCC-----------------------------------------------------------
Q 003611 230 --V----AG---------SWS----------------------------------------------------------- 235 (807)
Q Consensus 230 --~----~~---------~~~----------------------------------------------------------- 235 (807)
. ++ .|.
T Consensus 226 ~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g 305 (805)
T PRK00390 226 SEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTG 305 (805)
T ss_pred cceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecC
Confidence 0 00 000
Q ss_pred --------------------------------------------------------------------------------
Q 003611 236 -------------------------------------------------------------------------------- 235 (807)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (807)
T Consensus 306 ~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~ 385 (805)
T PRK00390 306 LYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSGEL 385 (805)
T ss_pred cEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEecccc
Confidence
Q ss_pred -----hHHHHHHHHHHHc----------CccceeeeeccCCCCccCcccc------------------------------
Q 003611 236 -----QNAIQATHAWLKE----------GLKVRCITRDLKWGVPVPLERF------------------------------ 270 (807)
Q Consensus 236 -----~~~~~~~~~~l~~----------gl~d~~ISR~~~WGipvP~~~~------------------------------ 270 (807)
..+++.+.+.|.+ .++||||||||.||+|||.+.+
T Consensus 386 ~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~ 465 (805)
T PRK00390 386 DGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPL 465 (805)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCCCCChh
Confidence 0001111122211 2569999999999999996542
Q ss_pred --------------------CCcEEEEEecccchhhhcccC------C-chhHhhhcCCCCCcceEEEEEeccccchh--
Q 003611 271 --------------------KEKVFYVWFDAPIGYVSITSC------Y-TNEWEQWWKNPENVELYQFMGKDNVPFHT-- 321 (807)
Q Consensus 271 --------------------~~~viyVWfDA~~~yis~~~~------~-~~~~~~~W~~p~d~~~ih~iGkDii~fH~-- 321 (807)
+.+|+++|||+.+-|+..+-. + .+.++.|+ |+| +.+.|.|++..|.
T Consensus 466 ~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~--P~D---ly~~G~D~~i~hL~y 540 (805)
T PRK00390 466 AKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWL--PVD---QYIGGIEHAVLHLLY 540 (805)
T ss_pred hhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcC--CCc---EEeccHHHHHHHHHH
Confidence 126899999997665543211 1 13466556 678 8999999874443
Q ss_pred -chHHHHhhhCCC--CcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHH
Q 003611 322 -VMFPSTLLGTGE--NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADL 398 (807)
Q Consensus 322 -i~~pa~l~a~~~--~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l 398 (807)
.+|.+.|...+. ...|++.+++|||+ |||||+||+|+|.++++ +||+|++|||++..+++++|++|+.+.+
T Consensus 541 ~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v-----KMSKS~GN~i~p~~~i~-~ygaD~lRl~l~~~~~~~~d~~~s~~~l 614 (805)
T PRK00390 541 ARFFTKVLRDLGLVSSDEPFKKLLTQGMV-----KMSKSKGNVVDPDDIIE-KYGADTARLFEMFAGPPEKDLEWSDSGV 614 (805)
T ss_pred HHHHHHHHHHhhcccCCcchhhheecCcE-----EeCCCCCCCCCHHHHHH-HcChHHHHHHHHhcCCccCCcccCHHHH
Confidence 345555554441 12467999999999 99999999999999999 6999999999999889999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 003611 399 QAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSI 478 (807)
Q Consensus 399 ~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l 478 (807)
.+. ..++++++|++++.... .++ .. .....+|+|++.+++.+++++.++|++|+|+.|++.+++|
T Consensus 615 ~~~--~~~l~kl~~~~~~~~~~--------~~~-~~----~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f 679 (805)
T PRK00390 615 EGA--YRFLQRVWRLVVDAKGE--------AGA-LD----VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMEL 679 (805)
T ss_pred HHH--HHHHHHHHHHHHHhhhc--------ccc-cC----cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 886 56788899988873221 111 11 1123478999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 479 SSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 479 ~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
++..++|.+ .....++.++++.+..||+|||||+||+||+.|+.+
T Consensus 680 ~n~lsk~~~---------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~ 724 (805)
T PRK00390 680 VNALYKAED---------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE 724 (805)
T ss_pred HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 998888861 112345677889999999999999999999999743
No 33
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.6e-69 Score=649.35 Aligned_cols=461 Identities=18% Similarity=0.289 Sum_probs=359.4
Q ss_pred CCCCCCCCC----CCCCCcEEEEcCCCCCCCc-ccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc
Q 003611 9 PAAPPPKLP----IPGKRNILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83 (807)
Q Consensus 9 ~~~~~~~~~----~~~~~~~~it~~~Py~ng~-lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~ 83 (807)
|++...|.. ..++++|||++++|||||. |||||+++ ++.+|+++||+||+||+|+|++|||+||+||+.+|.+.
T Consensus 93 W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~-y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~ 171 (963)
T PLN02563 93 WEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEG-YTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIET 171 (963)
T ss_pred HHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHH-HHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHc
Confidence 444544443 2367789999999999997 99999998 56799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccc
Q 003611 84 NCSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG 161 (807)
Q Consensus 84 g~~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g 161 (807)
|++|+++++++++.|+++|++||+++| ++++|++|.|.+.+|++|.+|+++|+||++...++||+.|+++|++.+|
T Consensus 172 g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev-- 249 (963)
T PLN02563 172 GTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV-- 249 (963)
T ss_pred CCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHh--
Confidence 999999999999999999999999998 7999999999999999999999999999999999999999999987654
Q ss_pred cCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC------------
Q 003611 162 TCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS------------ 229 (807)
Q Consensus 162 ~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~------------ 229 (807)
++++|++||.+++.++.+||||++++|+++|+++++...
T Consensus 250 -----------------------------~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nw 300 (963)
T PLN02563 250 -----------------------------VDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNW 300 (963)
T ss_pred -----------------------------hcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHh
Confidence 456799999999999999999999999999998863110
Q ss_pred ----------------------C-CCCCC------------------h---------------HHH--------------
Q 003611 230 ----------------------V-AGSWS------------------Q---------------NAI-------------- 239 (807)
Q Consensus 230 ----------------------~-~~~~~------------------~---------------~~~-------------- 239 (807)
. ...|. + ...
T Consensus 301 iG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~ 380 (963)
T PLN02563 301 IGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTEL 380 (963)
T ss_pred ccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhc
Confidence 0 00000 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 003611 240 -------------------------------------------------------------------------------- 239 (807)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (807)
T Consensus 381 ~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~ 460 (963)
T PLN02563 381 QKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTG 460 (963)
T ss_pred cceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccC
Confidence
Q ss_pred -----------------------HHHHHHHHc----------CccceeeeeccCCCCccCccccC---------------
Q 003611 240 -----------------------QATHAWLKE----------GLKVRCITRDLKWGVPVPLERFK--------------- 271 (807)
Q Consensus 240 -----------------------~~~~~~l~~----------gl~d~~ISR~~~WGipvP~~~~~--------------- 271 (807)
+.+.++|.+ .|+||||||||+||+|||.+.|+
T Consensus 461 ~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv 540 (963)
T PLN02563 461 EGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPL 540 (963)
T ss_pred ceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcc
Confidence 000011111 16799999999999999986432
Q ss_pred ---------------------------------------CcEEEEEecccchhhhcccC------CchhHhhhcCCCCCc
Q 003611 272 ---------------------------------------EKVFYVWFDAPIGYVSITSC------YTNEWEQWWKNPENV 306 (807)
Q Consensus 272 ---------------------------------------~~viyVWfDA~~~yis~~~~------~~~~~~~~W~~p~d~ 306 (807)
.+||++||++.+-|+..+-. +..+..++|. |+|
T Consensus 541 ~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~-PvD- 618 (963)
T PLN02563 541 TLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWM-PVD- 618 (963)
T ss_pred cchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcC-CCc-
Confidence 14678888887777653210 1112334665 788
Q ss_pred ceEEEEEeccccch---hchHHHHhhhCCC--CcccCeEEEeeceee----------cCCC-------------------
Q 003611 307 ELYQFMGKDNVPFH---TVMFPSTLLGTGE--NWTLMKTISVTEYLN----------YESG------------------- 352 (807)
Q Consensus 307 ~~ih~iGkDii~fH---~i~~pa~l~a~~~--~~~~p~~i~~hg~l~----------~~G~------------------- 352 (807)
+++.|.||.-.| +-+|-..|...|. ...|++.++.|||++ .+|+
T Consensus 619 --~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~ 696 (963)
T PLN02563 619 --LYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIP 696 (963)
T ss_pred --EeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccc
Confidence 899999996555 3455555554442 124789999999986 4566
Q ss_pred --------------------------ccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHH
Q 003611 353 --------------------------KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNEL 406 (807)
Q Consensus 353 --------------------------KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l 406 (807)
|||||+||+|+|.++++ +||+|++|||++..+|..+|.+|+.+.+... ..+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~--~rf 773 (963)
T PLN02563 697 EEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVS-EYGADSLRLYEMFMGPLRDSKTWSTSGVEGV--HRF 773 (963)
T ss_pred cccccccccccccccCCcccccccccccccccCCcCCHHHHHH-HcCcHHHHHHHHhCCCcccccccCHHHHHHH--HHH
Confidence 99999999999999999 7999999999999899999999999888775 456
Q ss_pred HHHHHHHHHHHHHhHhCCCCCCCC-CcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 003611 407 LNNLGNFINRVLSFIAKPPGQGYG-SIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (807)
Q Consensus 407 ~~~l~Nl~~R~~~~~~k~~~~~~~-g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y 485 (807)
+++++|++...... .. .+. +.++ .....|++++..++.+++++.++|++|+|+.|++.+|+|++..++
T Consensus 774 L~rlwn~~~~~~~~-~~----~~~~~~~~-----~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~- 842 (963)
T PLN02563 774 LGRTWRLVVGAPLP-DG----SFRDGTVV-----TDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYK- 842 (963)
T ss_pred HHHHHHHHHHhhhc-cc----ccCccccc-----cCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhC-
Confidence 77777776532110 00 111 1111 111346789999999999999999999999999999999876542
Q ss_pred HHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 486 LQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 486 i~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
|. . ...++++.+.+||+|||||+||+||++||.+
T Consensus 843 ------~~-----~--------~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~ 876 (963)
T PLN02563 843 ------WD-----K--------VPREAIEPFVLLLSPYAPHLAEELWFRLGHS 876 (963)
T ss_pred ------ch-----H--------HHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC
Confidence 21 0 1246778899999999999999999999853
No 34
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.4e-67 Score=635.47 Aligned_cols=461 Identities=19% Similarity=0.268 Sum_probs=365.4
Q ss_pred ccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc---------------CC---------CHHHHHH
Q 003611 37 PHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED---------------NC---------SPKEICD 92 (807)
Q Consensus 37 lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~---------------g~---------~p~e~~~ 92 (807)
|||||+++. +.+|+++||+||+||+|+|++|||+||+||+..|++. |+ +|.++++
T Consensus 1 lHiGH~~~~-t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~ 79 (897)
T PRK12300 1 LHVGHGRTY-TIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVE 79 (897)
T ss_pred CccchhHHH-HHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 799999985 5699999999999999999999999999999988642 43 5788999
Q ss_pred HHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccc-cC------
Q 003611 93 KYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG-TC------ 163 (807)
Q Consensus 93 ~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g-~c------ 163 (807)
+|...++++|++||++.| +-+.|++|.|.+.|+++|.+|+++|+||++...+.|||.|+|.|+|.++.+ .-
T Consensus 80 ~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~ 159 (897)
T PRK12300 80 YFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEY 159 (897)
T ss_pred HhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceE
Confidence 999999999999999987 556799999999999999999999999999999999999999999987642 10
Q ss_pred -------------------CCC--CC---------C----------------------CC-------------C------
Q 003611 164 -------------------PFE--GC---------N----------------------YE-------------S------ 172 (807)
Q Consensus 164 -------------------p~~--~c---------~----------------------~~-------------~------ 172 (807)
|.. || . +. +
T Consensus 160 ~~ikf~~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~ 239 (897)
T PRK12300 160 TLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKV 239 (897)
T ss_pred EEEEEeCCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEE
Confidence 110 00 0 00 0
Q ss_pred -------------------C----------------------CCc------------ch---------------------
Q 003611 173 -------------------A----------------------RGD------------QC--------------------- 178 (807)
Q Consensus 173 -------------------~----------------------~g~------------~c--------------------- 178 (807)
. ++. .|
T Consensus 240 ~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~ 319 (897)
T PRK12300 240 KNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKS 319 (897)
T ss_pred ECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCC
Confidence 0 010 00
Q ss_pred --h---------------ccCCCCCc-----------------------------ccc-CCCccccCCCceEEee-ecce
Q 003611 179 --E---------------NCGKLLNA-----------------------------TDL-KDPKCKVCRNAPQIRD-TNHL 210 (807)
Q Consensus 179 --e---------------~cG~~l~~-----------------------------~el-~~p~c~~~g~~~~~~~-~~~~ 210 (807)
+ .-|++.+. .++ ..|+|+|||++++++. ++||
T Consensus 320 ~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QW 399 (897)
T PRK12300 320 QEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQW 399 (897)
T ss_pred ccchhHHHHHHHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCce
Confidence 0 01222110 011 1378999999999986 5999
Q ss_pred eEecc--chHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCcc------ccCCcEEEEEeccc
Q 003611 211 FLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE------RFKEKVFYVWFDAP 282 (807)
Q Consensus 211 f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~------~~~~~viyVWfDA~ 282 (807)
|++++ .+++.+.+++++..+ +|+..++.+.+||.+ ++|||||||+.||+|+|++ .+.+.++|+|+++.
T Consensus 400 Fi~~~~~~~k~~~~~~~~~~~~---~P~~~~~~~~~~l~~-l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i 475 (897)
T PRK12300 400 FIDYSDPEWKELAHKALDNMEI---IPEEYRKEFENTIDW-LKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTI 475 (897)
T ss_pred EEEcCcHHHHHHHHHHHccCEE---ECHHHHHHHHHHHhh-hhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHH
Confidence 99997 799999999987654 566677889999985 9999999999999999962 13467899999988
Q ss_pred chhhhcc------------------c----------CC--------chhHhhhcCCCCCcceEEEEEeccccchhchHHH
Q 003611 283 IGYVSIT------------------S----------CY--------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPS 326 (807)
Q Consensus 283 ~~yis~~------------------~----------~~--------~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa 326 (807)
..|+... . ++ .++|+.|| |.| +|++|+||++||..+| .
T Consensus 476 ~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~--P~D---~~~~GkDii~~Hl~~~-~ 549 (897)
T PRK12300 476 AHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWY--PVD---WRHSGKDLIPNHLTFF-I 549 (897)
T ss_pred HHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccC--Cce---EEEeeeccCccHHHHH-H
Confidence 7776521 0 01 02355566 667 8999999999999999 4
Q ss_pred HhhhCCCC-cccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHH
Q 003611 327 TLLGTGEN-WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (807)
Q Consensus 327 ~l~a~~~~-~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~ 405 (807)
++.++..+ .++|+++++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.++.++|.+|+++.+... .+
T Consensus 550 ~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~-~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~--~~ 626 (897)
T PRK12300 550 FNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIE-EYGADVVRLYLTSSAELLQDADWREKEVESV--RR 626 (897)
T ss_pred HHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHH-HcChHHHHHHHHhCCCCCCCCccCHHHHHHH--HH
Confidence 44443322 24679999999999999999999999999999999 6999999999999889999999999988766 34
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHH
Q 003611 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAM-SISSEGNA 484 (807)
Q Consensus 406 l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~-~l~~~~N~ 484 (807)
+++++.|+++++... . +. ......|+|+++.++.+++++.++|++|+|+.|++.++ .+.+.+|+
T Consensus 627 ~l~r~~~~~~~~~~~-----------~-~~---~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~ 691 (897)
T PRK12300 627 QLERFYELAKELIEI-----------G-GE---EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRW 691 (897)
T ss_pred HHHHHHHHHHHHhcC-----------C-Cc---cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 455565555543211 1 11 11245789999999999999999999999999998886 67788999
Q ss_pred HHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 485 yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
|++..+| .++.++.++++.+++||+|||||+|++||+.||.+
T Consensus 692 Yi~~~k~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~ 733 (897)
T PRK12300 692 YLRRVGE------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733 (897)
T ss_pred HHHhcch------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 9987764 34567889999999999999999999999999854
No 35
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.1e-66 Score=567.63 Aligned_cols=303 Identities=22% Similarity=0.401 Sum_probs=272.3
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CCCH-------------
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSP------------- 87 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~~p------------- 87 (807)
++|+|.+|||||||.+|||||++. +.+|+++||+|++|++|.|++|+|+||+||+.+|++. |+++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~-~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNK-ILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHH-HHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 469999999999999999999985 5699999999999999999999999999999999986 8764
Q ss_pred ---HHHHHHHHHHHHHHHhhcCc--ccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccccccc
Q 003611 88 ---KEICDKYHVIHKDVYKWFDI--SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (807)
Q Consensus 88 ---~e~~~~~~~~~~~~~~~lgI--~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (807)
+++++++++.|++++++||| .+|.+++|++++|.+.++++|.+|+++|+||++.+.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 79999999999999999999 556789999999999999999999999999999998887
Q ss_pred CCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHH
Q 003611 163 CPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQAT 242 (807)
Q Consensus 163 cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 242 (807)
+++.+.++||||+|+++++.+++++++... +|++.++.+
T Consensus 144 --------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~---~P~~~~~~~ 182 (338)
T cd00818 144 --------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDKVNW---IPEWVKNRF 182 (338)
T ss_pred --------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCcE---ECHHHHHHH
Confidence 256789999999999999999999987432 478888899
Q ss_pred HHHHHcCccceeeeeccCCCCccCccccC----------CcEEEEEecccchhhhcccCCc---hhHhhhcCCCCCcceE
Q 003611 243 HAWLKEGLKVRCITRDLKWGVPVPLERFK----------EKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELY 309 (807)
Q Consensus 243 ~~~l~~gl~d~~ISR~~~WGipvP~~~~~----------~~viyVWfDA~~~yis~~~~~~---~~~~~~W~~p~d~~~i 309 (807)
.+|+++ |+||||||++.||+|+|.|.++ ++|+||||||+++|++.. +++ .+|+.|| |.| +
T Consensus 183 ~~~l~~-l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~-~~~~~~~~~~~~~--p~d---~ 255 (338)
T cd00818 183 GNWLEN-RRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL-HYPFENEDFEELF--PAD---F 255 (338)
T ss_pred HHHHhc-chhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc-CCCCcchhhhccC--CCe---E
Confidence 999975 9999999999999999987654 789999999999999875 554 3588899 456 7
Q ss_pred EEEEecccc--chhchHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCC
Q 003611 310 QFMGKDNVP--FHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (807)
Q Consensus 310 h~iGkDii~--fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~ 386 (807)
+++|+||++ ||+++||++++ .+. .+|+.+++|||++ .+|+|||||+||+|++.|+++ .||+|++||||++.++
T Consensus 256 ~~~GkDii~~wf~~~~~~~~~~-~~~--~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~-~~~~D~~R~~l~~~~~ 331 (338)
T cd00818 256 ILEGSDQTRGWFYSLLLLSTAL-FGK--APYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD-KYGADALRLWVASSDV 331 (338)
T ss_pred EeecchHHhHHHHHHHHHHHHh-cCC--CccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH-HcCcHHHHHHHHhCCC
Confidence 999999995 99999999874 333 4679999999987 589999999999999999999 6999999999999999
Q ss_pred CCCCccc
Q 003611 387 EVSDTLF 393 (807)
Q Consensus 387 ~~~D~~F 393 (807)
.++|++|
T Consensus 332 ~~~d~~~ 338 (338)
T cd00818 332 YAEDLRF 338 (338)
T ss_pred ccCCCCC
Confidence 9999876
No 36
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-63 Score=610.56 Aligned_cols=479 Identities=17% Similarity=0.218 Sum_probs=353.7
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-------CCC-------
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------NCS------- 86 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-------g~~------- 86 (807)
+++|+||.|+||+||.|||||+++. +.+|+++||+||+|++|+|++||||||+||+..|++. |..
T Consensus 44 ~~kf~i~~ppPY~NG~lHiGHa~t~-t~~D~i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~ 122 (1084)
T PLN02959 44 GEKFFGNFPYPYMNGLLHLGHAFSL-SKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEED 122 (1084)
T ss_pred CCcEEEeCCCCCCCCCcchhhHHHH-HHHHHHHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence 4679999999999999999999995 5699999999999999999999999999999998652 321
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHhhcC
Q 003611 87 ------------------------------------------------------------PKEICDKYHVIHKDVYKWFD 106 (807)
Q Consensus 87 ------------------------------------------------------------p~e~~~~~~~~~~~~~~~lg 106 (807)
|..++++|...++++|++||
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG 202 (1084)
T PLN02959 123 EDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFG 202 (1084)
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhC
Confidence 33356666688899999999
Q ss_pred cccc--cccCCCC--hhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccc---------------------
Q 003611 107 ISFD--NFGRTST--PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG--------------------- 161 (807)
Q Consensus 107 I~~D--~f~rT~~--~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g--------------------- 161 (807)
++.| +-+.|++ |.|..+|++.|.+|+++|+||++.+++.|||.|++.++|++++.
T Consensus 203 ~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~ 282 (1084)
T PLN02959 203 LGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFP 282 (1084)
T ss_pred ceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcch
Confidence 9887 4567877 99999999999999999999999999999999999999975421
Q ss_pred -----------------cCCCC-----CC---------------C--------------C--------------------
Q 003611 162 -----------------TCPFE-----GC---------------N--------------Y-------------------- 170 (807)
Q Consensus 162 -----------------~cp~~-----~c---------------~--------------~-------------------- 170 (807)
+-|.. .| + +
T Consensus 283 ~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~ 362 (1084)
T PLN02959 283 GKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYD 362 (1084)
T ss_pred hhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHH
Confidence 00110 00 0 0
Q ss_pred -------------CC-------------------------------------------CCCc--------------chhc
Q 003611 171 -------------ES-------------------------------------------ARGD--------------QCEN 180 (807)
Q Consensus 171 -------------~~-------------------------------------------~~g~--------------~ce~ 180 (807)
+. .||- ..+.
T Consensus 363 L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g 442 (1084)
T PLN02959 363 LIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPE 442 (1084)
T ss_pred hCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCC
Confidence 00 0000 0000
Q ss_pred c-------------------------------------CCCCCc---------------------------cccCCCccc
Q 003611 181 C-------------------------------------GKLLNA---------------------------TDLKDPKCK 196 (807)
Q Consensus 181 c-------------------------------------G~~l~~---------------------------~el~~p~c~ 196 (807)
+ |.+... .+-..|+|+
T Consensus 443 ~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~~pv~~ 522 (1084)
T PLN02959 443 FGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPEKKVMS 522 (1084)
T ss_pred CCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcCCCeEE
Confidence 1 100000 001247899
Q ss_pred cCCCceEEeeecceeEecc--chHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccc-----
Q 003611 197 VCRNAPQIRDTNHLFLDLP--ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER----- 269 (807)
Q Consensus 197 ~~g~~~~~~~~~~~f~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~----- 269 (807)
|||++++++.++|||++++ .+++.+++.+++..+ .|+..++.+.+||.. ++|||||||+.||+|+|++.
T Consensus 523 R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~---~P~~~~~~~~~wl~~-l~DWciSRQr~wGtpIPWd~~~~ie 598 (1084)
T PLN02959 523 RSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNL---YSDETRHGFEHTLGW-LNQWACSRSFGLGTRIPWDEQFLIE 598 (1084)
T ss_pred CCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEE---ECHHHHHHHHHHHhC-CCceeecccccCCCcCCcccceeec
Confidence 9999999999999999997 799999999987654 356667778999975 99999999999999999310
Q ss_pred -----------c------------------------CCcEEEEEecccchhhhcccCCc--------hhHhhhcCCCCCc
Q 003611 270 -----------F------------------------KEKVFYVWFDAPIGYVSITSCYT--------NEWEQWWKNPENV 306 (807)
Q Consensus 270 -----------~------------------------~~~viyVWfDA~~~yis~~~~~~--------~~~~~~W~~p~d~ 306 (807)
. ...|+++||++..-..+. +|+ ++|+.|+ |.|
T Consensus 599 slsdstiy~a~yti~~~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t--~~p~~~l~~~r~ef~~~y--P~D- 673 (1084)
T PLN02959 599 SLSDSTIYMAYYTVAHLLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS--DIPAELLEKMKQEFEYWY--PFD- 673 (1084)
T ss_pred cCCCCceeechhhHHHHHhhhhccCCccccCChhhcCccceeEeecCCCccccc--CCCHHHHhhhhHHHHhhC--CCe-
Confidence 0 135899999985432221 332 3455555 678
Q ss_pred ceEEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCC
Q 003611 307 ELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP 386 (807)
Q Consensus 307 ~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~ 386 (807)
+++.|+||+++|..+...+..++...-+.|+.+++|||++.+|+|||||+||+|+|.++++ .||+|++||||+..++
T Consensus 674 --l~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~-kyGADalRl~la~~~~ 750 (1084)
T PLN02959 674 --LRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIE-EFSADATRFALADAGD 750 (1084)
T ss_pred --EEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHH-HhCchHHHHHHhhcCC
Confidence 8999999999997665444444332335778999999999999999999999999999999 6999999999999888
Q ss_pred CCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 003611 387 EVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKV 466 (807)
Q Consensus 387 ~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~ 466 (807)
..+|.+|+++.+... ...+.|++..+...+.. ...+. +. ......|+|++++++.+++++.++|++|
T Consensus 751 ~~~D~nF~~k~~n~~-----~~~l~n~~~~~~~~~~~--~~~~~---~~---~~~~~~D~wils~l~~~i~~v~~a~e~y 817 (1084)
T PLN02959 751 GVDDANFVFETANAA-----ILRLTKEIAWMEEVLAA--ESSLR---TG---PPSTYADRVFENEINIAIAETEKNYEAM 817 (1084)
T ss_pred ccCCCCccHHHHHHH-----HHHHHHHHHHHHHhhhh--hcccC---Cc---ccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 889999999876543 22334443322222111 00111 11 1124579999999999999999999999
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHh
Q 003611 467 KLKQGLKTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (807)
Q Consensus 467 ~~~~al~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (807)
+|++|++..+ +|...-.+|... .+... ....++..++..+..||+|||||+||+||+.|
T Consensus 818 ~f~~A~~~~~Yel~~~k~~yr~~-------~~~~~---~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l 877 (1084)
T PLN02959 818 MFREALKSGFYDLQAARDEYRLS-------CGSGG---MNRDLVWRFMDVQTRLITPICPHYAEHVWREI 877 (1084)
T ss_pred cHHHHHHHHHHHHHHhHHHHhhc-------cccch---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 9999999743 233222333211 11111 23456778889999999999999999999999
No 37
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.3e-63 Score=542.41 Aligned_cols=294 Identities=28% Similarity=0.463 Sum_probs=268.8
Q ss_pred cEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC-------------CHHH
Q 003611 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC-------------SPKE 89 (807)
Q Consensus 23 ~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~-------------~p~e 89 (807)
+|+|++|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|++++. +|++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~-~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALT-HIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHH-HHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 5899999999999999999998 5779999999999999999999999999999999999988 9999
Q ss_pred HHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCC
Q 003611 90 ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167 (807)
Q Consensus 90 ~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~ 167 (807)
+|+++++.|+++|++|||++| .|++|+++.|.+.|+++|.+|+++|+||++.+.+
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999 9999999999999999999999999999877544
Q ss_pred CCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHH
Q 003611 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLK 247 (807)
Q Consensus 168 c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (807)
+.++||||+++++++++.+++++.+ .++++.++.+.+||.
T Consensus 137 -------------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~---~~p~~~~~~~~~~l~ 176 (312)
T cd00668 137 -------------------------------------RITEQWFFDMPKFKEKLLKALRRGK---IVPEHVKNRMEAWLE 176 (312)
T ss_pred -------------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC---cCChHHHHHHHHHHh
Confidence 3567899999999999999998765 367778889999999
Q ss_pred cCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCc--hhHhhhcCCCCCcceEEEEEeccccchhchHH
Q 003611 248 EGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT--NEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (807)
Q Consensus 248 ~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~--~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~p 325 (807)
+++ ||||||+++||+|+| ++++||||||+++|++.+.... +.|+.|| |.| +|++|+||++||+.+|+
T Consensus 177 ~~~-d~~isR~~~WG~~~P-----~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~--~~d---i~~~G~D~~~~h~~~~~ 245 (312)
T cd00668 177 SLL-DWAISRQRYWGTPLP-----EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSY--PAD---WHLIGKDILRGWANFWI 245 (312)
T ss_pred CCC-CeEEeccCCCCCcCC-----cccccchhhccHHHHHHcCCCccchhhhhcC--Cce---EEEEecchhhhHHHHHH
Confidence 877 999999999999999 5699999999999998863222 2477888 556 89999999999999999
Q ss_pred HHhhhCCCCcccCeEEEeeceeecCC-CccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003611 326 STLLGTGENWTLMKTISVTEYLNYES-GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (807)
Q Consensus 326 a~l~a~~~~~~~p~~i~~hg~l~~~G-~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~F 393 (807)
|++.+++.. .+|+++++|||++.+| +|||||+||+|++.|+++ .|++|++||||++..++++|.+|
T Consensus 246 ~~~~~~~~~-~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~-~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 246 TMLVALFGE-IPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE-KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHhcCC-CCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-HcCcHHHHHHHHhcCCccCCCCC
Confidence 999998753 4788999999999877 999999999999999999 69999999999999999999887
No 38
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-63 Score=574.05 Aligned_cols=460 Identities=19% Similarity=0.312 Sum_probs=366.2
Q ss_pred CCCCCCCCCCC--CC-CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC
Q 003611 9 PAAPPPKLPIP--GK-RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (807)
Q Consensus 9 ~~~~~~~~~~~--~~-~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~ 85 (807)
|++...|.+.. ++ +||||+.+.|||||.+|+||+|++ ...||++||+||+||+|+|.+|||..|+|++..|.+.|.
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Y-ti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~ 96 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNY-TIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGT 96 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccc-cHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCC
Confidence 66777777642 33 599999999999999999999995 569999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccC
Q 003611 86 SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC 163 (807)
Q Consensus 86 ~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~c 163 (807)
+|..++.++++.++++|++||.++| +-+.|+||+|.+++|++|.+|+++|+||+++..+.|||.|++.|++.+|.
T Consensus 97 ~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~--- 173 (814)
T COG0495 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI--- 173 (814)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceee---
Confidence 9999999999999999999999998 55679999999999999999999999999999999999999999987664
Q ss_pred CCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHH
Q 003611 164 PFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH 243 (807)
Q Consensus 164 p~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 243 (807)
+..|||||.+|+.++-.||||++++|.++|++-+..... .||..++.+.+
T Consensus 174 ----------------------------~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~--~wPE~Vk~mq~ 223 (814)
T COG0495 174 ----------------------------DGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLAT--LWPETVKGMQR 223 (814)
T ss_pred ----------------------------cCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhcc--CCchhHHHHHH
Confidence 345899999999999999999999999999887655431 37777777777
Q ss_pred HHHH----------------------------------------------------------------------------
Q 003611 244 AWLK---------------------------------------------------------------------------- 247 (807)
Q Consensus 244 ~~l~---------------------------------------------------------------------------- 247 (807)
+||.
T Consensus 224 nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~ 303 (814)
T COG0495 224 NWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAH 303 (814)
T ss_pred cCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeecc
Confidence 7743
Q ss_pred ------------------------------------------------------------------c-------------
Q 003611 248 ------------------------------------------------------------------E------------- 248 (807)
Q Consensus 248 ------------------------------------------------------------------~------------- 248 (807)
+
T Consensus 304 ~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~l 383 (814)
T COG0495 304 AEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVL 383 (814)
T ss_pred CCCcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceE
Confidence 0
Q ss_pred ----------------------------------CccceeeeeccCCCCccCccccCC----------------------
Q 003611 249 ----------------------------------GLKVRCITRDLKWGVPVPLERFKE---------------------- 272 (807)
Q Consensus 249 ----------------------------------gl~d~~ISR~~~WGipvP~~~~~~---------------------- 272 (807)
.|+||.+|||++||.|+|.-+++.
T Consensus 384 inS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~ 463 (814)
T COG0495 384 INSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGL 463 (814)
T ss_pred eccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccC
Confidence 245899999999999999754321
Q ss_pred --------------------------cEEEEEecccchhhhccc-------CCchhHhhhcCCCCCcceEEEEEeccccc
Q 003611 273 --------------------------KVFYVWFDAPIGYVSITS-------CYTNEWEQWWKNPENVELYQFMGKDNVPF 319 (807)
Q Consensus 273 --------------------------~viyVWfDA~~~yis~~~-------~~~~~~~~~W~~p~d~~~ih~iGkDii~f 319 (807)
.|+..|+++.+-|+..+- ....+--.||. |.| +++.|+|++..
T Consensus 464 gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~-PVD---~yigG~ehavl 539 (814)
T COG0495 464 GTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWY-PVD---LYIGGIEHAVL 539 (814)
T ss_pred CCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhccc-Chh---eeecchhHHHH
Confidence 566667777655543210 01112234666 788 89999999988
Q ss_pred hhchHH---HHhhhCCC-C-cccCeEEEeeceeec-CCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccc
Q 003611 320 HTVMFP---STLLGTGE-N-WTLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLF 393 (807)
Q Consensus 320 H~i~~p---a~l~a~~~-~-~~~p~~i~~hg~l~~-~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~F 393 (807)
|..|.. ..|--.|+ + -.|+++++++||++. +|+|||||+||+|+|+++++ .||+|++|+|++..+|..+|.+|
T Consensus 540 HLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-~yGADt~Rl~~m~~ap~~~d~~W 618 (814)
T COG0495 540 HLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-KYGADTVRLYIMFAAPPEQDLEW 618 (814)
T ss_pred HHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHH-HhCchHHHHHHHhhCChhhCCCC
Confidence 876544 44433443 0 124456999999998 79999999999999999999 69999999999999999999999
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHH
Q 003611 394 TWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK-VKLKQGL 472 (807)
Q Consensus 394 s~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~-~~~~~al 472 (807)
+.+.+... ..+++.+++++.+....... ... ......++++ ++++.+.+.+.++. +.++.++
T Consensus 619 ~e~gv~g~--~rfL~r~~~l~~~~~~~~~~---------~~~---~~~~~~~~~~---~h~~~~~v~~~~e~~~~~nt~i 681 (814)
T COG0495 619 SESGVEGA--RRFLQRVWNLVKEHLEKLVE---------ELT---KEQGKEDRWL---LHRTIKKVTEDFEARQTFNTAI 681 (814)
T ss_pred ChhhhHHH--HHHHHHHHHHHHHhhhcccc---------ccc---chhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 45566666666554321100 000 1111234444 45566777777777 8899999
Q ss_pred HHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 473 KTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 473 ~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
..+|+|++...+|..... .+. .++.+++..+..||+||+||+|+++|+.||.
T Consensus 682 ~~~m~l~N~l~~~~~~~~------~~~-------~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~ 733 (814)
T COG0495 682 AALMELLNALRKYLRRTE------GDR-------KVLREALETWVRLLAPFAPHIAEELWEELGN 733 (814)
T ss_pred HHHHHHHHHHHHHHhccc------chH-------HHHHHHHHHHHHHhcccccHHHHHHHHHhcC
Confidence 999999999999876543 111 3456778889999999999999999999995
No 39
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4e-63 Score=537.30 Aligned_cols=293 Identities=24% Similarity=0.426 Sum_probs=265.7
Q ss_pred cEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003611 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (807)
Q Consensus 23 ~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 102 (807)
||+||+|||||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++++.+.|++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~-~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRT-YTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCCccccchHH-HHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999997 678999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhc
Q 003611 103 KWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 103 ~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~ 180 (807)
++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||.
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~-------------------------------- 127 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCK-------------------------------- 127 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeC--------------------------------
Confidence 99999998 57899999999999999999999999999999999972
Q ss_pred cCCCCCccccCCCccccCCCceEEeeecceeEec--cchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeec
Q 003611 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (807)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (807)
.++||||++ ++|++.+.++++++. .||++.++.+.+|++ |||+
T Consensus 128 -------------------------~~~~~f~~l~~~~~~~~l~~~l~~~~---~~p~~~~~~~~~~l~-------isR~ 172 (314)
T cd00812 128 -------------------------LLDQWFLKYSETEWKEKLLKDLEKLD---GWPEEVRAMQENWIG-------CSRQ 172 (314)
T ss_pred -------------------------ccceEEEEcCcHHHHHHHHHHHHhcC---cCCHHHHHHHHHHhe-------eeee
Confidence 367999999 999999999998864 389999999999985 9999
Q ss_pred cCCCCccCccccCCcEEEEEecccc---hhhhcccC-C---------chhHhhhcCCCCCcceEEEEEeccccchh---c
Q 003611 259 LKWGVPVPLERFKEKVFYVWFDAPI---GYVSITSC-Y---------TNEWEQWWKNPENVELYQFMGKDNVPFHT---V 322 (807)
Q Consensus 259 ~~WGipvP~~~~~~~viyVWfDA~~---~yis~~~~-~---------~~~~~~~W~~p~d~~~ih~iGkDii~fH~---i 322 (807)
+.||+|+|+ ++++|||+|+.+ +|+++... . .+.|+.|| |.| +|++|+|+++||+ +
T Consensus 173 ~~wGipvP~----~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~--p~d---i~v~G~D~i~~h~~~~~ 243 (314)
T cd00812 173 RYWGTPIPW----TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWY--PVD---IYIGGKEHAPNHLLYSR 243 (314)
T ss_pred cCCcCCcCc----ccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhC--CCe---eeecchhHHHHHHHHHH
Confidence 999999996 689999999997 77765421 1 12477777 556 8999999999997 8
Q ss_pred hHHHHhhhCCC-CcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccH
Q 003611 323 MFPSTLLGTGE-NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTW 395 (807)
Q Consensus 323 ~~pa~l~a~~~-~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~ 395 (807)
+|+++|.++|+ ...+|+++++||||+++|+|||||+||+|++.|+++ .+|+|++||||++.++ .|.+|+|
T Consensus 244 ~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~-~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 244 FNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIK-KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred HHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHH-HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 99999999985 013688999999999999999999999999999999 6999999999999887 8898875
No 40
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-59 Score=513.92 Aligned_cols=485 Identities=19% Similarity=0.284 Sum_probs=383.9
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHH-HHHHHc------CCCHHH---
Q 003611 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATE-TKAMED------NCSPKE--- 89 (807)
Q Consensus 20 ~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~-~~A~~~------g~~p~e--- 89 (807)
++..|.+.+ +||.||||||++. |..||+.||+-++|..++|++|||+||.||+ .+|.+. .++|.+
T Consensus 57 q~~~f~L~d----anG~lhlghalnk-ILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~ 131 (937)
T KOG0433|consen 57 QRVEFELKD----ANGNLHLGHALNK-ILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRA 131 (937)
T ss_pred cCceEEEec----cCCCccchHHHHH-HHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHH
Confidence 445577777 9999999999997 5699999999999999999999999999999 566542 346654
Q ss_pred ----HHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccc--
Q 003611 90 ----ICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEG-- 161 (807)
Q Consensus 90 ----~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g-- 161 (807)
+++.-++.+++.|.++||..| ..|-|.+|.|.....++|.+|+++|+||++..+|+|+|+..+.|+++++|.
T Consensus 132 ~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~ 211 (937)
T KOG0433|consen 132 KARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYND 211 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCc
Confidence 678888999999999999887 456799999999999999999999999999999999999999999998873
Q ss_pred ------------------------------------cCCC----C-----------------------------------
Q 003611 162 ------------------------------------TCPF----E----------------------------------- 166 (807)
Q Consensus 162 ------------------------------------~cp~----~----------------------------------- 166 (807)
+.|+ +
T Consensus 212 nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~f 291 (937)
T KOG0433|consen 212 NHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEF 291 (937)
T ss_pred CCcceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhh
Confidence 1121 0
Q ss_pred --------------------CCCCC---------------------------------------------------CCCC
Q 003611 167 --------------------GCNYE---------------------------------------------------SARG 175 (807)
Q Consensus 167 --------------------~c~~~---------------------------------------------------~~~g 175 (807)
+|.|. +.+|
T Consensus 292 e~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G 371 (937)
T KOG0433|consen 292 EKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRG 371 (937)
T ss_pred hhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCC
Confidence 00000 0001
Q ss_pred cchhccCCCCCcc------------------------ccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCC
Q 003611 176 DQCENCGKLLNAT------------------------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVA 231 (807)
Q Consensus 176 ~~ce~cG~~l~~~------------------------el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~ 231 (807)
.+..+.|..++.. ...+|+.||++.|+++|.++|||+++..++....+.+++....
T Consensus 372 ~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk~~ 451 (937)
T KOG0433|consen 372 CYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVKVA 451 (937)
T ss_pred ceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhceeC
Confidence 1111112111111 1136999999999999999999999999999999999987753
Q ss_pred CCCChHHHHHHHHHHHcCccceeeeeccCCCCccCcccc-----------------------------------------
Q 003611 232 GSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF----------------------------------------- 270 (807)
Q Consensus 232 ~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~----------------------------------------- 270 (807)
|.+..+.+..++. +.++||||||+.||+|||.-..
T Consensus 452 ---P~~~~~rl~~~~~-~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~ 527 (937)
T KOG0433|consen 452 ---PGDSDLRLKQLVT-TRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEE 527 (937)
T ss_pred ---CcchHHHHHHHHc-CCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhh
Confidence 4455567777876 4899999999999999996321
Q ss_pred -------------CCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccc--cchhchHHHHhhhCCCCc
Q 003611 271 -------------KEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGTGENW 335 (807)
Q Consensus 271 -------------~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii--~fH~i~~pa~l~a~~~~~ 335 (807)
..++++||||+...+-.... ...+. .+| +++.|.|+. ||++.+-.. .|... .
T Consensus 528 ~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~-~~~~~------~aD---v~LEG~DQ~rGWFQSsLLTs--vA~q~-k 594 (937)
T KOG0433|consen 528 VREIPDIASEYKKGTDIMDVWFDSGSSWSAVLD-NEREH------VAD---VYLEGVDQFRGWFQSSLLTS--VAVQN-K 594 (937)
T ss_pred hcccchhHHHhccCCceeeeEecCCCcceeecC-CCCCc------cee---eEEecchhcchHHHHHHHHH--HHHhc-c
Confidence 01799999998877655431 11110 244 899999996 788754322 22222 2
Q ss_pred ccCeEEEeeceee-cCCCccccccCCccChhhhhhcC------CCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHH
Q 003611 336 TLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTN------IPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (807)
Q Consensus 336 ~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~------~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~ 408 (807)
.|.+.+++|||.. .+|.|||||+||||+|+.+++ + ||+|+||||.+. +....|+......+.++ .+-+.
T Consensus 595 APYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~-G~~k~payGaD~LR~WVA~-~~~t~d~~iGp~il~qv--~e~l~ 670 (937)
T KOG0433|consen 595 APYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTD-GSLKQPAYGADGLRFWVAG-SENTGESKIGPKILDQV--DEKLI 670 (937)
T ss_pred CCchheeeeeeEecCCccchhhcccCcCCHHHHhC-CcccCCCccccceeeeeec-ccccCceecCHHHHHHH--HHHHH
Confidence 5789999999965 789999999999999999998 7 999999999995 67789999999999988 78899
Q ss_pred HHHHHHHHHHHhHhCCCCCCCCCc---CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--HH
Q 003611 409 NLGNFINRVLSFIAKPPGQGYGSI---VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE--GN 483 (807)
Q Consensus 409 ~l~Nl~~R~~~~~~k~~~~~~~g~---ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~--~N 483 (807)
++.|.++.+++.++. +++. +|- .+..-+|++++..+.++.+++.++|++|+|++++..+..|+.. +|
T Consensus 671 K~R~T~RfllGnl~d-----~~~~~~~~p~---~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa 742 (937)
T KOG0433|consen 671 KFRNTFRFLLGNLQD-----FDGKQVKFPL---KDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSA 742 (937)
T ss_pred HHHhHHHHHhhcccc-----cCCccccccc---hhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhH
Confidence 999999999988776 3332 332 2344579999999999999999999999999999999998864 89
Q ss_pred HHHHhhcchhhcc-CChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 484 AYLQESQFWKLYK-EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 484 ~yi~~~~pw~l~k-~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
.|++..+...... .+...+.++..++.+++..+...++||+|++++++|+.|-..
T Consensus 743 ~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~ 798 (937)
T KOG0433|consen 743 FYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGS 798 (937)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCC
Confidence 9999999875543 244555677788888999999999999999999999999743
No 41
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-58 Score=518.54 Aligned_cols=504 Identities=18% Similarity=0.250 Sum_probs=395.0
Q ss_pred CCCCCCCCCCCC---CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH---
Q 003611 9 PAAPPPKLPIPG---KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME--- 82 (807)
Q Consensus 9 ~~~~~~~~~~~~---~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~--- 82 (807)
|.+.+-|.|..+ ...|.++.|||.++|.+|||||.+.+| .|+++||.||.||.|.|++|+|+.|..++.-.++
T Consensus 59 w~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~ai-qD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~ 137 (995)
T KOG0432|consen 59 WEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAI-QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLA 137 (995)
T ss_pred HHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHH-HHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHH
Confidence 344555666554 456999999999999999999999765 9999999999999999999999999887655443
Q ss_pred -cC-CC------------HHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeee
Q 003611 83 -DN-CS------------PKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPY 146 (807)
Q Consensus 83 -~g-~~------------p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y 146 (807)
+| ++ ..+|-+++...+.+++++||.++| +-..|+|+...+.|.+.|.+|++.|+||++.+.+.|
T Consensus 138 ~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW 217 (995)
T KOG0432|consen 138 REGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNW 217 (995)
T ss_pred HhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeee
Confidence 22 32 234567788899999999999998 445699999999999999999999999999999999
Q ss_pred cCCCCccccccccccc--------------------------------CCC---------------------CCCCCC--
Q 003611 147 CDTCKRFLADRLVEGT--------------------------------CPF---------------------EGCNYE-- 171 (807)
Q Consensus 147 ~~~~~~~l~d~~v~g~--------------------------------cp~---------------------~~c~~~-- 171 (807)
|+.-.+.++|-+|+.. |+. ..+.|.
T Consensus 218 ~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~l 297 (995)
T KOG0432|consen 218 CPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHL 297 (995)
T ss_pred chhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccc
Confidence 9999999999887621 100 001110
Q ss_pred --------------------------------------------------------CCCCcchhccCCC-----------
Q 003611 172 --------------------------------------------------------SARGDQCENCGKL----------- 184 (807)
Q Consensus 172 --------------------------------------------------------~~~g~~ce~cG~~----------- 184 (807)
...|..-+.||-.
T Consensus 298 hGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~k 377 (995)
T KOG0432|consen 298 HGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREK 377 (995)
T ss_pred cCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHH
Confidence 0112222344410
Q ss_pred -------------CCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCcc
Q 003611 185 -------------LNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251 (807)
Q Consensus 185 -------------l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~ 251 (807)
..+..++-|.|.|+|+.+|..-.+|||++.+....+..+.+++.... ..|+........|+.+ .+
T Consensus 378 vv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~-i~P~~~~k~w~~W~~~-i~ 455 (995)
T KOG0432|consen 378 VVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLE-ILPEFHEKEWYRWLEN-IR 455 (995)
T ss_pred HHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeE-ECchHHHHHHHHHHhh-cc
Confidence 01112455899999999999999999999999999999988865432 2455666677899986 99
Q ss_pred ceeeeeccCCCCccCcccc---------------------------------------CCcEEEEEecccchhhhcccCC
Q 003611 252 VRCITRDLKWGVPVPLERF---------------------------------------KEKVFYVWFDAPIGYVSITSCY 292 (807)
Q Consensus 252 d~~ISR~~~WGipvP~~~~---------------------------------------~~~viyVWfDA~~~yis~~~~~ 292 (807)
|||||||+.||..||.+.. +.+|+++||.+.+=.+|.. ||
T Consensus 456 DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~l-GW 534 (995)
T KOG0432|consen 456 DWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTL-GW 534 (995)
T ss_pred ccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhc-CC
Confidence 9999999999999997421 1279999999988777764 88
Q ss_pred ch---hHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCC---cccCeEEEeeceee-cCCCccccccCCccChh
Q 003611 293 TN---EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGEN---WTLMKTISVTEYLN-YESGKFSKSKGIGVFGN 365 (807)
Q Consensus 293 ~~---~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~---~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~ 365 (807)
++ ++..|+ |.+ +--.|.||++|+. |-+..+|.. ..|++.|+.||.+. -+|+|||||+||||+|.
T Consensus 535 P~~t~d~~~fy--P~s---llETG~DILfFWV----aRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPl 605 (995)
T KOG0432|consen 535 PEETKDFKNFY--PLS---LLETGHDILFFWV----ARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPL 605 (995)
T ss_pred ccccccHHhcC--Cch---hhhcCchHHHHHH----HHHHHhhhhhcCCCCchheeechhhccccccccchhhccccCHH
Confidence 75 688888 444 4568999999854 433333321 24789999999997 78999999999999999
Q ss_pred hhhhcC------------------------------C-------CchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHH
Q 003611 366 DAKDTN------------------------------I-------PVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLN 408 (807)
Q Consensus 366 d~l~~~------------------------------~-------~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~ 408 (807)
|+++ + | |.|+|||-|++....++|++++...+... ..++|
T Consensus 606 DVI~-Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~--r~FcN 682 (995)
T KOG0432|consen 606 DVID-GISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGY--RHFCN 682 (995)
T ss_pred HHhc-cccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhH--HHHHH
Confidence 9986 2 3 89999999999999999999999998864 78999
Q ss_pred HHHHHHHHHHHhHhCCCCCCCCCcCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHH
Q 003611 409 NLGNFINRVLSFIAKPPGQGYGSIVPDAN---GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGN 483 (807)
Q Consensus 409 ~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~---~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~N 483 (807)
+|||+.++++..+.+ + .+|... .......|.|++..|+..++.+.+.|+.|+|..|...+.+|. ..|.
T Consensus 683 KlWNa~rF~l~~lg~----~---~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCD 755 (995)
T KOG0432|consen 683 KLWNATRFALQRLGE----N---FVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCD 755 (995)
T ss_pred HHHHHHHHHHHhccc----C---CCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999998876443 2 233211 111112799999999999999999999999999999999887 4599
Q ss_pred HHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhC
Q 003611 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLN 536 (807)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg 536 (807)
-|++..+|-... .+......+..++..++.....||+||||+++|+||++|-
T Consensus 756 VYlE~~Kp~l~~-~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 756 VYLEATKPLLWG-DSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred HHHHHhhHHhcC-CcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 999999984322 3334555667777888888999999999999999999973
No 42
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=3.5e-59 Score=547.10 Aligned_cols=364 Identities=23% Similarity=0.364 Sum_probs=272.6
Q ss_pred CCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc-CC-----------
Q 003611 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NC----------- 85 (807)
Q Consensus 18 ~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-g~----------- 85 (807)
..++++|+|++||||+||.|||||+++.+ ..|+++||+||+|++|+|++|||+||+||+.++++. |.
T Consensus 19 ~~~~~~f~i~~~PPy~nG~lH~GH~~~~~-~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~ 97 (601)
T PF00133_consen 19 NKNKPKFFIHDPPPYANGDLHIGHALNKT-IKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGR 97 (601)
T ss_dssp TTTSGEEEEEE---BTSSS-BHHHHHHHH-HHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTH
T ss_pred CCCCCcEEEEeCCCCCCCcccHHHHHHHH-HHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhccccccccccccc
Confidence 35678899999999999999999999965 599999999999999999999999999999999875 33
Q ss_pred -----CHHHHHHHHHHHHHHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccc
Q 003611 86 -----SPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (807)
Q Consensus 86 -----~p~e~~~~~~~~~~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (807)
.+.++++++.+.++++|++||++.| +.+.|+++.|.+.++++|.+|+++|+||++..+++||++|++.|+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~E 177 (601)
T PF00133_consen 98 EEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHE 177 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGG
T ss_pred ccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhh
Confidence 2668899999999999999999886 567899999999999999999999999999999999999999999998
Q ss_pred cccc--------------------------CCCC--CCC----CCC----------------------------------
Q 003611 159 VEGT--------------------------CPFE--GCN----YES---------------------------------- 172 (807)
Q Consensus 159 v~g~--------------------------cp~~--~c~----~~~---------------------------------- 172 (807)
|+.. -|.. ++. ..+
T Consensus 178 v~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 257 (601)
T PF00133_consen 178 VEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGK 257 (601)
T ss_dssp EEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECH
T ss_pred cccccccCceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcc
Confidence 8621 1110 000 000
Q ss_pred -----------------------------------------------------------CCCcchhccCC----------
Q 003611 173 -----------------------------------------------------------ARGDQCENCGK---------- 183 (807)
Q Consensus 173 -----------------------------------------------------------~~g~~ce~cG~---------- 183 (807)
..|...+.+|.
T Consensus 258 ~L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar 337 (601)
T PF00133_consen 258 ELVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEAR 337 (601)
T ss_dssp HHTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHH
T ss_pred eecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeecc
Confidence 00111111111
Q ss_pred ------------CCCccc--cCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcC
Q 003611 184 ------------LLNATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEG 249 (807)
Q Consensus 184 ------------~l~~~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~g 249 (807)
++...+ ...|+|||||++++.+.++|||++++++++.+.+.+++....|.+ .++.+.+||.+
T Consensus 338 ~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~---~~~~~~~~i~~- 413 (601)
T PF00133_consen 338 EKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES---YRKRFENWIDN- 413 (601)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST---CHHHHHHHHHT-
T ss_pred HHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc---chhhhhhhccc-
Confidence 000001 124799999999999999999999999999999999988766554 45677899986
Q ss_pred ccceeeeeccCCCCccCccccC----------------------------------------------CcEEEEEecccc
Q 003611 250 LKVRCITRDLKWGVPVPLERFK----------------------------------------------EKVFYVWFDAPI 283 (807)
Q Consensus 250 l~d~~ISR~~~WGipvP~~~~~----------------------------------------------~~viyVWfDA~~ 283 (807)
++|||||||+.||+|+|.|.++ .+|+++|||+.+
T Consensus 414 l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~ 493 (601)
T PF00133_consen 414 LRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGL 493 (601)
T ss_dssp --EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCT
T ss_pred cccchhhccCCCCccceeeecccCcccccccccccccccccccccccccccccccccccccccceEEeeeeccccccccC
Confidence 8999999999999999986421 269999999987
Q ss_pred hhhhcccCCc----hhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCcccccc
Q 003611 284 GYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSK 358 (807)
Q Consensus 284 ~yis~~~~~~----~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~ 358 (807)
.+++.. +++ .+++.|+ |.| +.+.|+|++++|..+......++... .+++.+++|||++ .+|+|||||+
T Consensus 494 ~~~~~~-~~~~~~~~~~~~~~--P~D---~~~~G~D~~~~W~~~~l~~~~~l~~~-~pfk~v~~hG~vld~~G~KMSKS~ 566 (601)
T PF00133_consen 494 WPFAVL-GWPENDREEFEYWY--PVD---LYIEGKDQIRGWFQSSLFLSVALFGK-EPFKKVITHGFVLDEDGRKMSKSK 566 (601)
T ss_dssp CHHHHT-TSTTCSCHHHHHHS--SBS---EEEEEGGGTTTHHHHHHHHHHHHSSS-TSBSEEEEE--EEETTSSB-BTTT
T ss_pred Cccccc-ccccccchhccccC--Ccc---cccCCccchhhHHHHhHhhccccccC-CchheeeecccccccceeecccCC
Confidence 766554 443 3577666 678 78999999999876554444444322 4679999999987 6899999999
Q ss_pred CCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q 003611 359 GIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (807)
Q Consensus 359 GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs 394 (807)
||+|+|.++++ .||+|++|+|++..++..+|++||
T Consensus 567 GNvi~p~~ii~-~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 567 GNVIDPEDIIE-KYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp TB--BHHHHHH-HT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred CcccCHHHHHH-HhCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999 699999999999778889999997
No 43
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-57 Score=495.73 Aligned_cols=459 Identities=20% Similarity=0.282 Sum_probs=365.7
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (807)
Q Consensus 19 ~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~ 98 (807)
.++++ ||.+..|||+|.+||||.|.++| .|+++||+||+||+|+..+|||.+|+|.|.+|.+.|++|+.++..+++.+
T Consensus 55 ~sk~K-YiLsMFPYPSG~LHiGHvRVYTI-sD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 55 KSKKK-YILSMFPYPSGALHIGHVRVYTI-SDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred cCCCc-eEEEecCCCCCcccccceEEEEe-hHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 34555 99999999999999999998654 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccc--cccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCc
Q 003611 99 KDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGD 176 (807)
Q Consensus 99 ~~~~~~lgI~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~ 176 (807)
++++.+|||+|| +.+.|.+|+|.+..|++|.+|+++|++|+.+.++.|||.+.|.|++.+|..
T Consensus 133 k~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~--------------- 197 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDA--------------- 197 (876)
T ss_pred HHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcc---------------
Confidence 999999999996 688999999999999999999999999999999999999999999987742
Q ss_pred chhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHH---------
Q 003611 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLK--------- 247 (807)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--------- 247 (807)
++++||+|.+++.+.-+|||+++++|.++|++.++.. +.|+. ++++.++||.
T Consensus 198 ---------------~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L---~~W~~-vk~mQrnWIG~~~G~el~F 258 (876)
T KOG0435|consen 198 ---------------DGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETL---PEWPE-VKDMQRNWIGRCDGAELMF 258 (876)
T ss_pred ---------------cCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhh---hhhhh-HHHHHHhhcccccceEEEE
Confidence 3458999999999999999999999999999999865 35887 7777788843
Q ss_pred --------------------------------------------------------------------------------
Q 003611 248 -------------------------------------------------------------------------------- 247 (807)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (807)
T Consensus 259 ~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v 338 (876)
T KOG0435|consen 259 PLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYV 338 (876)
T ss_pred EeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechh
Confidence
Q ss_pred ------------------------------------------------------------------------------cC
Q 003611 248 ------------------------------------------------------------------------------EG 249 (807)
Q Consensus 248 ------------------------------------------------------------------------------~g 249 (807)
..
T Consensus 339 ~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~k 418 (876)
T KOG0435|consen 339 LDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYK 418 (876)
T ss_pred ccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecch
Confidence 23
Q ss_pred ccceeeeeccCCCCccCcccc--------------------------------------------------CCcEEEEEe
Q 003611 250 LKVRCITRDLKWGVPVPLERF--------------------------------------------------KEKVFYVWF 279 (807)
Q Consensus 250 l~d~~ISR~~~WGipvP~~~~--------------------------------------------------~~~viyVWf 279 (807)
|+||-||||++||.|||.-.| +.+|+++|+
T Consensus 419 LkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFv 498 (876)
T KOG0435|consen 419 LKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFV 498 (876)
T ss_pred hhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhh
Confidence 679999999999999997532 238999999
Q ss_pred cccchhhhcccC------CchhHhhhcCCCCCcceEEEEEeccccchhc---hHHHHhhhCCCC--cccCeEEEeecee-
Q 003611 280 DAPIGYVSITSC------YTNEWEQWWKNPENVELYQFMGKDNVPFHTV---MFPSTLLGTGEN--WTLMKTISVTEYL- 347 (807)
Q Consensus 280 DA~~~yis~~~~------~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i---~~pa~l~a~~~~--~~~p~~i~~hg~l- 347 (807)
|+.+-|+..+-. +......+|. |.| ++++|+++.-.|.. +|.-+|...|.- -.|++.++..|++
T Consensus 499 DSsWYYlRylDpkN~e~~~d~a~a~k~M-PVD---vYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~ 574 (876)
T KOG0435|consen 499 DSSWYYLRYLDPKNPEEPFDKAKAKKNM-PVD---VYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVR 574 (876)
T ss_pred ccceeeEeecCCCCcccccchhhhhccC-cee---EEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhccc
Confidence 999999865421 1224567887 788 89999999766654 455566655531 1233333332222
Q ss_pred -----------------------------ec-CC-------CccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCC
Q 003611 348 -----------------------------NY-ES-------GKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (807)
Q Consensus 348 -----------------------------~~-~G-------~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D 390 (807)
.. ++ +|||||++|+|+|.+++. .||+|.+|+|++-.+|..++
T Consensus 575 G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~-~yG~D~tRl~ilf~ap~~~~ 653 (876)
T KOG0435|consen 575 GKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL-EYGVDTTRLYILFAAPPRDP 653 (876)
T ss_pred ceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-HhCchHHHHHHHhhCCcccc
Confidence 11 11 499999999999999998 69999999999999999999
Q ss_pred ccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-hccHH
Q 003611 391 TLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAME-KVKLK 469 (807)
Q Consensus 391 ~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e-~~~~~ 469 (807)
++++.+.+... ..+...+++++.++...-.. +...+...+ ........+.+.+..+.++.++.++|+ .+.++
T Consensus 654 ~nW~es~i~Gi--~rwl~riw~l~~~~~~ar~~--g~~~d~~~~---td~~dae~~kl~~~~n~fi~~vt~~~e~~~slN 726 (876)
T KOG0435|consen 654 INWNESAIPGI--KRWLQRIWALVSQILQARDD--GKAKDLKKL---TDGFDAETRKLKETYNFFIKQVTEHYEVLFSLN 726 (876)
T ss_pred cccccccchhH--HHHHHHHHHHHHHHHHHHhc--CCccccccc---ccccchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999887 56778888888877654211 101111111 122234567889999999999999997 57799
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCC
Q 003611 470 QGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 470 ~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~ 538 (807)
.||..+|.|.+...+-.....-| ++ ....++..+.++|+|++||+|+++|..|+.+
T Consensus 727 taIS~~m~ltN~l~~a~k~~~~h-----~~--------~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~ 782 (876)
T KOG0435|consen 727 TAISDMMGLTNALKKALKIVLVH-----SP--------EFERALEALVIMLAPFAPHVASELWSALAND 782 (876)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhc-----Ch--------HHHHHHHHHHHHHhccCchhHHHHHHHHhcc
Confidence 99999999887544333222111 11 1123456678899999999999999999953
No 44
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=4.1e-52 Score=484.38 Aligned_cols=404 Identities=15% Similarity=0.147 Sum_probs=303.5
Q ss_pred CCCCCCCCCCCCCCC-cEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHH-HCCCceeEecCcchhhHHHHHHHHHcCC
Q 003611 8 NPAAPPPKLPIPGKR-NILITSALPYVNNVPHLGNIIGSVLSADVFARFCR-LRGYNAIYICGTDEYGTATETKAMEDNC 85 (807)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r-~~G~~V~~v~G~D~hG~~i~~~A~~~g~ 85 (807)
++..+.+|.|..+.+ ++|+|+|.+| +.+||||||+ ||.+||++||+| +.||+|.|++|+||||+||+.+|+++|+
T Consensus 46 lt~~k~~f~p~~~~~v~~Y~CGPTvY--d~~HiGhart-~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~ 122 (651)
T PTZ00399 46 LTGGKVEFVPQNGRQVRWYTCGPTVY--DSSHLGHART-YVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKL 122 (651)
T ss_pred CCCCccccccCCCCeeEEEEeCCCcc--CCcccccchH-HHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCC
Confidence 677888999976544 6888886555 9999999998 688999999999 8999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCC
Q 003611 86 S-PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCP 164 (807)
Q Consensus 86 ~-p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp 164 (807)
+ +.+++++|.+.|.++|++|||.++.++++. .+|...|+.++++|+++|++|...+.+||+++
T Consensus 123 ~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~--------------- 186 (651)
T PTZ00399 123 SIFLELARKWEKEFFEDMKALNVRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVE--------------- 186 (651)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEch---------------
Confidence 9 999999999999999999999997776665 58999999999999999999987666666554
Q ss_pred CCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHH
Q 003611 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHA 244 (807)
Q Consensus 165 ~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (807)
+|.+. ...|.+.. |.+..+....
T Consensus 187 ---------------------------------------------------~f~~~-~~~Yg~L~-----p~~~~~~~~~ 209 (651)
T PTZ00399 187 ---------------------------------------------------AFRKA-GHVYPKLE-----PESVADEDRI 209 (651)
T ss_pred ---------------------------------------------------hcccc-hhhHHhhC-----hhhcCCHHHH
Confidence 33322 11222110 0000111122
Q ss_pred HHHcC-cccee-eeec-cC---CCCccCccccCCcEEEEEecccchhhhcccCCch----hHhhhcCCCCCcceEEEEEe
Q 003611 245 WLKEG-LKVRC-ITRD-LK---WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGK 314 (807)
Q Consensus 245 ~l~~g-l~d~~-ISR~-~~---WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~----~~~~~W~~p~d~~~ih~iGk 314 (807)
+..++ +.+-+ ++|+ .+ ||++.|++. . | ++++|+-. .+|+- .-.++...+.| ||.+|.
T Consensus 210 ~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep--~-----W-~SpwG~Gr--PGWHiECsam~~~~lg~~~D---Ih~gG~ 276 (651)
T PTZ00399 210 AEGEGALGKVSGEKRSPNDFALWKASKPGEP--S-----W-DSPWGKGR--PGWHIECSAMASNILGDPID---IHSGGI 276 (651)
T ss_pred hcccCCccccCcCCCCCccHHhhCCCCCCCC--C-----C-CCCCCCCC--CCchHHHHHHHHHHcCCcce---eeccCC
Confidence 22233 43433 5663 33 888888652 2 4 46777631 24432 23344544566 899999
Q ss_pred ccccchhchHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q 003611 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (807)
Q Consensus 315 Dii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs 394 (807)
|++|+||.+..|+..|+....++++.++++|||+++|+|||||+||+|+|.|+++ .||+|++||||++ .++++|++||
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLe-kygaDaLR~~lLs-~~~~~dldFS 354 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALS-KYTARQIRLLFLL-HKWDKPMNYS 354 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHH-HcChHHHHHHHHh-cCCCCCCccC
Confidence 9999999999999998754334667777779999999999999999999999999 6999999999997 5899999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHH
Q 003611 395 WADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLK 473 (807)
Q Consensus 395 ~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~ 473 (807)
++.+.++.|.+ +.|.|++.|+.+++.+ .. .+... ...+.+++++..+..+...+.++| ++|+++.|+.
T Consensus 355 ~e~l~~a~~~~--~~l~n~~~rl~s~l~~----~~---~~~~~--~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~ 423 (651)
T PTZ00399 355 DESMDEAIEKD--KVFFNFFANVKIKLRE----SE---LTSPQ--KWTQHDFELNELFEETKSAVHAALLDNFDTPEALQ 423 (651)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHhh----cc---ccccc--cCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999886654 5678888887766553 11 11111 123467889999999999999999 7899999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHH
Q 003611 474 TAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLAC 518 (807)
Q Consensus 474 ~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~ 518 (807)
.|++|++.+|.|++... ......+..+...+..++.+|++
T Consensus 424 ~L~eLv~~~N~yi~~~~-----~~~~~ll~~v~~~l~~~l~ILGl 463 (651)
T PTZ00399 424 ALQKLISATNTYLNSGE-----QPSAPLLRSVAQYVTKILSIFGL 463 (651)
T ss_pred HHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHhcccC
Confidence 99999999999997210 01112233444555555666665
No 45
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-53 Score=459.14 Aligned_cols=501 Identities=20% Similarity=0.291 Sum_probs=382.0
Q ss_pred CCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH-cCC-----------
Q 003611 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME-DNC----------- 85 (807)
Q Consensus 18 ~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~-~g~----------- 85 (807)
..++++|.+.++||+++|.||-||+...+| .|+..||..+.||.|---.|||+||+|+|-...+ .|+
T Consensus 34 sk~rp~ftFyDGPPFATGlPHyGHiLa~TI-KDiVtRya~~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI 112 (1070)
T KOG0434|consen 34 SKGRPKFTFYDGPPFATGLPHYGHILASTI-KDIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGI 112 (1070)
T ss_pred hCCCCceeeccCCccccCCCccchhhhhhH-HHHHHHHhhccccceeeecccccCCCccceeechhcCCCCHHHHHHHhH
Confidence 457889999999999999999999998877 9999999999999999999999999999865543 344
Q ss_pred -----CHHHHHHHHHHHHHHHHhhcC--cccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccc
Q 003611 86 -----SPKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (807)
Q Consensus 86 -----~p~e~~~~~~~~~~~~~~~lg--I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (807)
.++.++-+|+.++++...+|| |+||+=|+|..|.+.+.|+++|++|+++|++|++.....|+..|.+.|+.-+
T Consensus 113 ~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFE 192 (1070)
T KOG0434|consen 113 DKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFE 192 (1070)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchh
Confidence 366788899999999999999 6777778999999999999999999999999999999999999999987632
Q ss_pred cc----------------------------ccCCC----C--CC------------------------------------
Q 003611 159 VE----------------------------GTCPF----E--GC------------------------------------ 168 (807)
Q Consensus 159 v~----------------------------g~cp~----~--~c------------------------------------ 168 (807)
-. .|.|+ + .|
T Consensus 193 a~QNYKdV~DPav~v~F~li~~~~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~ 272 (1070)
T KOG0434|consen 193 AQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKND 272 (1070)
T ss_pred cccCcccCCCCeEEEEeeccCCcceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccc
Confidence 11 12222 0 00
Q ss_pred ----------------CCC------------C-----------------------CCC----cchh--------------
Q 003611 169 ----------------NYE------------S-----------------------ARG----DQCE-------------- 179 (807)
Q Consensus 169 ----------------~~~------------~-----------------------~~g----~~ce-------------- 179 (807)
.|+ . +.| +.|-
T Consensus 273 ~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp 352 (1070)
T KOG0434|consen 273 NYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP 352 (1070)
T ss_pred cHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCc
Confidence 000 0 000 0110
Q ss_pred --c-----------------------------cCCCCCccc--cCCCccccCCCceEEeeecceeEeccchHHHHHHHHH
Q 003611 180 --N-----------------------------CGKLLNATD--LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (807)
Q Consensus 180 --~-----------------------------cG~~l~~~e--l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (807)
. .|+++.... ..+|.|||+.+|+.++..++||.+.....++|++...
T Consensus 353 VDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~ 432 (1070)
T KOG0434|consen 353 VDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM 432 (1070)
T ss_pred cccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhccc
Confidence 0 011111111 1469999999999999999999999999888887655
Q ss_pred cCCCCCCCChHH--HHHHHHHHHcCccceeeeeccCCCCccCccccCC--------------------------------
Q 003611 227 NMSVAGSWSQNA--IQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE-------------------------------- 272 (807)
Q Consensus 227 ~~~~~~~~~~~~--~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~-------------------------------- 272 (807)
+.. |-+.. -+.+.+||++ .+||+|||.+.||+|||.|-.++
T Consensus 433 ~t~----WVP~~ikeKRF~NWL~n-ARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~i 507 (1070)
T KOG0434|consen 433 KTH----WVPQNIKEKRFANWLKN-ARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHI 507 (1070)
T ss_pred ccc----cCChhhhHHHHHHHHhh-hhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCce
Confidence 543 54332 2457899987 89999999999999999984221
Q ss_pred ---------------cEEEEEecccchhhhcccCCc----hhHhhhcCCCCCcceEEEEEeccc--cchhchHHHHhhhC
Q 003611 273 ---------------KVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNV--PFHTVMFPSTLLGT 331 (807)
Q Consensus 273 ---------------~viyVWfDA~~~yis~~~~~~----~~~~~~W~~p~d~~~ih~iGkDii--~fH~i~~pa~l~a~ 331 (807)
.|++.||++.....+. ..|+ +.|+.-+ |+| ..-.|-|+. ||+++.-.+.++
T Consensus 508 tIps~~gkg~l~Rv~eVfDCWFESGSMPYAq-~HyPFenk~~fe~~f--Pad---FIaEGlDQTRGWFYTL~VlsT~L-- 579 (1070)
T KOG0434|consen 508 TIPSKKGKGVLHRVSEVFDCWFESGSMPYAQ-RHYPFENKEEFEENF--PAD---FIAEGLDQTRGWFYTLLVLSTAL-- 579 (1070)
T ss_pred ecccCCCCcceehhhhHhhhhhccCCCcchh-hcCCccchHHHhhcC--chH---hhhhccccccchhhHHHHHHHHH--
Confidence 5889999987654432 2444 3466666 556 344688886 687764333322
Q ss_pred CCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCC-CCCCccccHHHHHHHHhHHHHHH
Q 003611 332 GENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRP-EVSDTLFTWADLQAKSNNELLNN 409 (807)
Q Consensus 332 ~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~-~~~D~~Fs~~~l~~~~n~~l~~~ 409 (807)
...+++++++++|.++ .||+|||||+.|.-+|..+++ +||+|+||+||..+.. ....+.|..+.+.+.+ +++.--
T Consensus 580 -F~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iin-kYGADalRlYLInSPVvraE~LkFkeeGVrevv-k~v~lP 656 (1070)
T KOG0434|consen 580 -FGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIIN-KYGADALRLYLINSPVVRAENLKFKEEGVREVV-KDVLLP 656 (1070)
T ss_pred -cCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHH-hhcchheeeeeecCccccccccccchhhHHHHH-Hhhhhh
Confidence 2236889999999987 789999999999999999999 7999999999987422 3678999999999877 555566
Q ss_pred HHHHHHHHHHhHhCCCCCCCCCc--CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HHHHH
Q 003611 410 LGNFINRVLSFIAKPPGQGYGSI--VPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE-GNAYL 486 (807)
Q Consensus 410 l~Nl~~R~~~~~~k~~~~~~~g~--ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~-~N~yi 486 (807)
++|.+++......... .-.|. .++.......-+|+|+++..+.++.-+++.|++|++..++-.+..|+.. .|+|+
T Consensus 657 W~NsyrF~~qn~~~~~--~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYi 734 (1070)
T KOG0434|consen 657 WYNSYRFLVQNAALLK--KETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYI 734 (1070)
T ss_pred hhHHHHHHHHHHHHhc--cccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhhe
Confidence 7888877665443210 01111 1111112345589999999999999999999999999999999999975 99999
Q ss_pred HhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 487 ~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
.-++-..-.......+..+|.++.++|..+.++++||.|+++|.||+.|..
T Consensus 735 R~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~ 785 (1070)
T KOG0434|consen 735 RFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKK 785 (1070)
T ss_pred ehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh
Confidence 877632211123467888999999999999999999999999999999974
No 46
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.6e-52 Score=462.98 Aligned_cols=384 Identities=16% Similarity=0.169 Sum_probs=278.1
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEec----------CcchhhHH
Q 003611 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYIC----------GTDEYGTA 75 (807)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~----------G~D~hG~~ 75 (807)
-++.++++|.|.. ++-++|+|. ||||+.+||||+|+ +|.+|+++||+|+.||+|.|++ |+|+||+|
T Consensus 8 tlt~~ke~f~p~~~~~v~mYvCG--pTvy~~~HiGhar~-~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddK 84 (490)
T PRK14536 8 TLGRQQEEFQPIEHGHVRLYGCG--PTVYNYAHIGNLRT-YVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDK 84 (490)
T ss_pred cCCCCeeccccCCCCceEEEeeC--CccCCCcccchhHH-HHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChH
Confidence 3678889999975 444566544 79999999999998 6889999999999999999997 67777999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccc
Q 003611 76 TETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLA 155 (807)
Q Consensus 76 i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~ 155 (807)
|+.+|+++|++|++++++|++.|+++|++|||.++.++ +..++|...++++|++|+++|++|+..+.||||++
T Consensus 85 ii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~------ 157 (490)
T PRK14536 85 MVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR------ 157 (490)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC------
Confidence 99999999999999999999999999999999996554 34469999999999999999999999999999996
Q ss_pred cccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCC
Q 003611 156 DRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSW 234 (807)
Q Consensus 156 d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~ 234 (807)
+||. ||.. .| .+..++.. |..++... .++++ +|..|
T Consensus 158 ------~~~~--------YG~L---s~--~~~~~l~~------g~~v~~~~------------------~K~np~DFaLW 194 (490)
T PRK14536 158 ------TFPS--------YGSL---AS--AAVEDLQA------GARIEHDT------------------NKRNPHDFVLW 194 (490)
T ss_pred ------cccc--------hhhh---cC--CCHHHhhc------CCcCCCCC------------------CCCCchhchhc
Confidence 2222 2211 00 11112111 21111000 01112 33345
Q ss_pred ChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEe
Q 003611 235 SQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGK 314 (807)
Q Consensus 235 ~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGk 314 (807)
... .++.+..++++.+||.++|+|+ +.+.+ .-.+|.....| ||++|+
T Consensus 195 K~~----------~~~~~~~~~W~SpWG~GRPGWH-------------IECsa-------Ms~~~lg~~~D---IH~GG~ 241 (490)
T PRK14536 195 FTR----------SKFENHALTWDSPWGRGYPGWH-------------IECSA-------MSMKYLGEQCD---IHIGGV 241 (490)
T ss_pred ccc----------cCCCCCCCcccCCCCCCCCChH-------------HHHHH-------HHHHHcCCcee---EEeccc
Confidence 421 1334556788999999999983 33322 23345543344 999999
Q ss_pred ccccchhchHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q 003611 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (807)
Q Consensus 315 Dii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs 394 (807)
|++||||.+++|+.+|+.. .++++.|+++||++++|+|||||+||+|++.|+++.+|+++++|||+++ ++++++++||
T Consensus 242 DliFPHHeneiAqs~a~~g-~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr~~l~Fs 319 (490)
T PRK14536 242 DHIRVHHTNEIAQCEAATG-KPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYRSQLAFS 319 (490)
T ss_pred cCCCcchhhHHHHHHHhcC-CCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCCCCCCCC
Confidence 9999999999999998643 2678999999999999999999999999999999945999999999999 8999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHH
Q 003611 395 WADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLK 473 (807)
Q Consensus 395 ~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~ 473 (807)
++.|.++.| -.++|.|++.++...... ...+................+...+..+...+.++| ++|+++.|+.
T Consensus 320 ~e~l~~a~~--~~~rl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~ 393 (490)
T PRK14536 320 WEALKTAKA--ARRSLVRRVARVVDAARA----TTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALS 393 (490)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhhhc----ccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHH
Confidence 999998843 455555555554321111 000000000000000000001123445667888999 6899999999
Q ss_pred HHHHHHHHHHH
Q 003611 474 TAMSISSEGNA 484 (807)
Q Consensus 474 ~i~~l~~~~N~ 484 (807)
.|+++++.+|.
T Consensus 394 ~l~~~~~~~n~ 404 (490)
T PRK14536 394 ELQKLVKDTSV 404 (490)
T ss_pred HHHHHHHHhhh
Confidence 99999998874
No 47
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=9.4e-51 Score=458.92 Aligned_cols=376 Identities=14% Similarity=0.110 Sum_probs=289.4
Q ss_pred CCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003611 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (807)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (807)
++.++++|.|.. ++-++|+|. |||+|.+||||+|+ +|.+|+++||+|+.||+|.||+|+||||+||+.+|+++|++
T Consensus 66 ltr~ke~f~P~~~~~v~~Y~CG--pTvYd~~HIGhaR~-~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~ 142 (557)
T PLN02946 66 MSRKKELFKPKVEGKVGMYVCG--VTAYDLSHIGHARV-YVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGED 142 (557)
T ss_pred CCCCeeccccCCCCceeEEEeC--CccCCCCccccchh-hHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCC
Confidence 678888999864 455677664 78999999999997 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCC
Q 003611 87 PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFE 166 (807)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~ 166 (807)
|++++++|++.|.++|++|||. +.+++|+..+|+..+++++++|+++|++|++.+.||||++.-.
T Consensus 143 ~~ela~~y~~~f~~d~~~LnI~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~-------------- 207 (557)
T PLN02946 143 PISLSRRYCEEFLSDMAYLHCL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFP-------------- 207 (557)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcch--------------
Confidence 9999999999999999999998 5566787789999999999999999999999999999987321
Q ss_pred CCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHHHHHH
Q 003611 167 GCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAW 245 (807)
Q Consensus 167 ~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (807)
.||.. .++.+ .++. .|..++..+ -+.+| +|..|+...
T Consensus 208 ------~YG~L---s~~~l--~~l~------~g~rv~~~~------------------~K~np~DFaLWK~~k------- 245 (557)
T PLN02946 208 ------EYGKL---SGRKL--EDNR------AGERVAVDS------------------RKKNPADFALWKAAK------- 245 (557)
T ss_pred ------hhhhc---CCCCh--hHhh------cCCCCCccc------------------ccCCccccceeccCC-------
Confidence 12221 11111 1111 133222111 01222 455676421
Q ss_pred HHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHH
Q 003611 246 LKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (807)
Q Consensus 246 l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~p 325 (807)
.|- ++.+.+||-..|+|+. ++...-.+|...+.| ||.+|.|++|+||.+..
T Consensus 246 --~ge----~~W~SPWG~GRPGWHI--------------------ECSaMs~~~lG~~~D---IH~GG~DL~FPHHENEi 296 (557)
T PLN02946 246 --EGE----PFWDSPWGPGRPGWHI--------------------ECSAMSAAYLGHSFD---IHGGGMDLVFPHHENEI 296 (557)
T ss_pred --CCC----CCccCCCCCCCCcHHH--------------------HHHHHHHHHcCCCee---EeccccccCCCcccchH
Confidence 232 3447899999999942 333334455544455 99999999999999999
Q ss_pred HHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHH
Q 003611 326 STLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNE 405 (807)
Q Consensus 326 a~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~ 405 (807)
|+..|+... +..++|++||||+++|+|||||+||+|++.|+++ .|++|++||||++ .+++++++||++.+.++ ..
T Consensus 297 AQsea~~g~-~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~-~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a--~~ 371 (557)
T PLN02946 297 AQSCAACCD-SNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVID-LYHPLALRLFLLG-THYRSPINYSDVQLESA--SE 371 (557)
T ss_pred HHHHHHhCC-CCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHH-hcCccceeeeeec-cCCCCCcEecHHHHHHH--HH
Confidence 999885322 4568999999999999999999999999999999 6999999999998 77999999999999887 45
Q ss_pred HHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Q 003611 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGNA 484 (807)
Q Consensus 406 l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~N~ 484 (807)
-+.++.++++|+...+.+. ... ..... . ...+...+..+.+.+.++| ++|+++.|+..|+++++.+|.
T Consensus 372 ~l~~l~~~~~~~~~~l~~~----~~~-~~~~~---~---~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~ 440 (557)
T PLN02946 372 RIFYIYQTLHDCEESLQQH----DST-FEKDS---V---PPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTIND 440 (557)
T ss_pred HHHHHHHHHHHHHHHhhhh----ccc-ccccc---c---chhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 5667888888887655431 100 00000 0 0112234455668889999 689999999999999999999
Q ss_pred HHHh
Q 003611 485 YLQE 488 (807)
Q Consensus 485 yi~~ 488 (807)
+++.
T Consensus 441 ~~~~ 444 (557)
T PLN02946 441 LLHT 444 (557)
T ss_pred Hhhh
Confidence 9864
No 48
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.3e-50 Score=454.84 Aligned_cols=364 Identities=17% Similarity=0.198 Sum_probs=284.5
Q ss_pred CCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003611 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (807)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (807)
++.++..|.|.. ++.++|+|.| ||||.+||||+|+ ++.+|+++||+|++||+|.|++|+|+||+||+.+|+++|++
T Consensus 9 l~~~~~~f~p~~~~~v~~yvcgP--tvy~~~HiGHar~-~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~ 85 (463)
T PRK00260 9 LTRQKEEFKPLEPGKVKMYVCGP--TVYDYAHIGHARS-FVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGES 85 (463)
T ss_pred CCCceeecccCCCCcceEEEeCC--ccCCCcccccchh-HHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCC
Confidence 577888898864 5567887764 6779999999998 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCc-ccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCC
Q 003611 87 PKEICDKYHVIHKDVYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (807)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI-~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (807)
|++++++|++.|+++|++||| .+|.+.|++ .|...+++++++|+++|++|++.+.++||++.-.-
T Consensus 86 ~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~------------ 151 (463)
T PRK00260 86 IKELTERYIAAFHEDMDALNVLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPD------------ 151 (463)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccccc------------
Confidence 999999999999999999999 568888888 69999999999999999999999999999874321
Q ss_pred CCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHHHHH
Q 003611 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (807)
Q Consensus 166 ~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (807)
||.. .+. +..++. .|..++. .. .+.+| +|..|+...
T Consensus 152 --------yg~l---s~~--~~~~~~------~~~~~~~----------~~--------~K~~~~DF~Lwk~~~------ 188 (463)
T PRK00260 152 --------YGKL---SGR--NLDELQ------AGARVEV----------AE--------EKRDPLDFALWKAAK------ 188 (463)
T ss_pred --------cccC---CCC--CHHHHh------ccCcCCc----------cc--------CCCCccccceecCCC------
Confidence 2211 000 001111 1211110 00 01222 455666421
Q ss_pred HHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchH
Q 003611 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (807)
Q Consensus 245 ~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~ 324 (807)
.|-. ....+||...|+|+. +|...-.++...+.| ||..|+|++++|+.+.
T Consensus 189 ---~~~~----~w~s~~g~grpgWhi--------------------ecsam~~~~lg~~~D---ih~gG~DlifpHh~ne 238 (463)
T PRK00260 189 ---PGEP----SWESPWGKGRPGWHI--------------------ECSAMSTKYLGETFD---IHGGGADLIFPHHENE 238 (463)
T ss_pred ---CCCC----CCCCCCCCCCCChhH--------------------HHHHHHHHhcCCCcc---eecCccccCCCchHhH
Confidence 1222 236789999999942 222222334544566 8999999999999999
Q ss_pred HHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhH
Q 003611 325 PSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (807)
Q Consensus 325 pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~ 404 (807)
.|+..++.. .++++.++++||++++|+|||||+||+|++.|+++ .|++|++|||+++ ++++++++|+++.+.+. .
T Consensus 239 iaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~-~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a--~ 313 (463)
T PRK00260 239 IAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-KYDPEVLRFFLLS-AHYRSPLNFSEEALEQA--K 313 (463)
T ss_pred HHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHH-HcCchHhHHHHHh-CCCCCCCccCHHHHHHH--H
Confidence 999877543 25667788889999999999999999999999999 6999999999997 77899999999998887 4
Q ss_pred HHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Q 003611 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGN 483 (807)
Q Consensus 405 ~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~N 483 (807)
..+++++|+++++.. . ..|.++...+..+.+++.++| ++|+++.|+..|+++++.+|
T Consensus 314 ~~~~rl~~~~~~~~~---~-------------------~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n 371 (463)
T PRK00260 314 KALERLYNALAETAL---G-------------------EDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREIN 371 (463)
T ss_pred HHHHHHHHHHHHhhh---c-------------------cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 557888888876531 0 123466778888899999999 59999999999999999999
Q ss_pred HHHHh
Q 003611 484 AYLQE 488 (807)
Q Consensus 484 ~yi~~ 488 (807)
+|++.
T Consensus 372 ~~~~~ 376 (463)
T PRK00260 372 RALET 376 (463)
T ss_pred HHhhc
Confidence 99865
No 49
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.2e-50 Score=446.54 Aligned_cols=376 Identities=18% Similarity=0.193 Sum_probs=277.9
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeE---------ecCc-chhhHHHH
Q 003611 8 NPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY---------ICGT-DEYGTATE 77 (807)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~---------v~G~-D~hG~~i~ 77 (807)
++.++++|.|. ++-++|+| .|||++.+||||+|+ +|.+|+++||+|++||+|.| +||+ |+||+||+
T Consensus 9 ltr~ke~f~p~-~~v~mY~C--GpTVYd~~HiGh~r~-~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi 84 (481)
T PRK14534 9 KTKDLSELKNF-SDVKVYAC--GPTVYNYAHIGNFRT-YIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVV 84 (481)
T ss_pred CCCCeeecccC-CceEEEeC--CCCCCCCCCccchhH-HHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHH
Confidence 67888889887 55556644 478999999999997 68899999999999999999 4555 45589999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccc
Q 003611 78 TKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADR 157 (807)
Q Consensus 78 ~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~ 157 (807)
.+|+++|++|++++++|++.|.+++++|||.++.|++| .++|+..+++++++|.++|++|+..+.||||+++ |
T Consensus 85 ~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~--~---- 157 (481)
T PRK14534 85 KAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC--F---- 157 (481)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc--c----
Confidence 99999999999999999999999999999999988876 4699999999999999999999999999999985 2
Q ss_pred cccccCCCCCCCCCCCCCcchhccCCCCCccccCC-CccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCC
Q 003611 158 LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKD-PKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWS 235 (807)
Q Consensus 158 ~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~-p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~ 235 (807)
|. ||... | .++.+ +.|. |..+. ++. .++++ +|..|.
T Consensus 158 ----------~~----YG~ls---~-----~~l~~l~~~~--~~~v~----------~~~--------~K~np~DFaLWK 195 (481)
T PRK14534 158 ----------KS----YGQMA---G-----INLNDFKDMS--VSRVE----------IDK--------SKRNKSDFVLWF 195 (481)
T ss_pred ----------cc----hhhhc---C-----CCHHHHhhhc--cCcCC----------ccc--------CCCCcccchhcC
Confidence 21 22211 1 11111 1121 11111 111 01122 333454
Q ss_pred hHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchh-HhhhcCCCCCcceEEEEEe
Q 003611 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE-WEQWWKNPENVELYQFMGK 314 (807)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~-~~~~W~~p~d~~~ih~iGk 314 (807)
. ..++.+..++++.+||...|+|+. ++... ++.+| +..| ||++|+
T Consensus 196 ~----------~~~~~~~~~~w~spWG~GrPgWHi--------------------ECsam~~~~lg-~~~D---IH~GG~ 241 (481)
T PRK14534 196 T----------NSKFKDQEMKWDSPWGFGYPSWHL--------------------ECAAMNLEYFK-STLD---IHLGGV 241 (481)
T ss_pred c----------CCcCCCCCCeecCCCCCcCCcHHH--------------------HHHHHHHHHcC-Ccce---EEeccc
Confidence 2 234667778999999999999942 22222 33344 2345 999999
Q ss_pred ccccchhchHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q 003611 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (807)
Q Consensus 315 Dii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs 394 (807)
|++||||.+++|+.+|+. +.++++.|+++||++++|+|||||+||+|++.|+++.+++++++|||+++ +++.++++||
T Consensus 242 DliFPHHene~Aqs~a~~-g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls-~~yr~~l~Fs 319 (481)
T PRK14534 242 DHIGVHHINEIAIAECYL-NKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLT-AHYRTQLKFT 319 (481)
T ss_pred ccCCCcchhHHHHHhhhc-CCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHh-CCCCCCCCCC
Confidence 999999999999999864 23688999999999999999999999999999999845999999999998 8999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHH
Q 003611 395 WADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLK 473 (807)
Q Consensus 395 ~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~ 473 (807)
++.+.++. .-++++.+.++++...+.. .++...... .... .......+.+.+.++| ++|+++.|+.
T Consensus 320 ~e~l~~a~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~---~~~~~~~~~~~f~~Al~DDlNtp~Al~ 386 (481)
T PRK14534 320 FNNLKACK--IARENMLNKLTYFYSSLDQ-----FDLNLLNKD---LENI---EFSLEKEYYDSFLEKIAFDLNIPQGLA 386 (481)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhhhh-----ccccccccc---cccc---hhhhHHHHHHHHHHHHhhcCChHHHHH
Confidence 99999883 3445555555544332211 000000000 0000 0011223456788889 6899999999
Q ss_pred HHHHHHHHHHHH
Q 003611 474 TAMSISSEGNAY 485 (807)
Q Consensus 474 ~i~~l~~~~N~y 485 (807)
.|+++++..|..
T Consensus 387 ~l~~~~k~~n~~ 398 (481)
T PRK14534 387 LLWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHHh
Confidence 999999988863
No 50
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=8.1e-50 Score=452.01 Aligned_cols=364 Identities=16% Similarity=0.154 Sum_probs=278.3
Q ss_pred CCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003611 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (807)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (807)
++.++++|.|.. ++.++|+|.| ||||.+||||+|+ +|.+|+++||+|++||+|.|++|+|+||+||+.+|+++|++
T Consensus 7 lt~~~e~f~p~~~~~v~~yvcgp--tvy~~~HiGhar~-~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~ 83 (465)
T TIGR00435 7 LTRQKEEFEPLVQGKVKMYVCGP--TVYDYCHIGHART-AIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGES 83 (465)
T ss_pred CCCCeeccccCCCCcceEEEecC--ccCCCcccccchH-HHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCC
Confidence 678889999864 5667887765 8889999999998 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccc-cCCCChhHHHHHHHHHHHHHhCCCeeeee-eeeeecCCCCcccccccccccCC
Q 003611 87 PKEICDKYHVIHKDVYKWFDISFDNF-GRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCP 164 (807)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~D~f-~rT~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp 164 (807)
|++++++|++.|++++++|||++|.+ .+++ .|...+++++++|.++|++|+.. +.+|||++|...+
T Consensus 84 ~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~y---------- 151 (465)
T TIGR00435 84 VYEVSERFIEAYFEDMKALNVLPPDLEPRAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDY---------- 151 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcCCcccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchh----------
Confidence 99999999999999999999999875 4556 79999999999999999999999 9999999864321
Q ss_pred CCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHHHH
Q 003611 165 FEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATH 243 (807)
Q Consensus 165 ~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 243 (807)
|... ++. ..++. .|..++. .. .+.+| +|..|+...
T Consensus 152 ----------G~ls---~~~--~~~~~------~~~~~~~----------~~--------~K~~p~DF~Lwk~~~----- 187 (465)
T TIGR00435 152 ----------GKLS---KQD--LDQLE------AGARVDV----------DE--------AKRNKLDFVLWKSSK----- 187 (465)
T ss_pred ----------ccCC---CCC--HHHHh------cccccCc----------cc--------ccCCCCCceeeCCCC-----
Confidence 1100 000 00111 1111110 00 01222 445565321
Q ss_pred HHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhch
Q 003611 244 AWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVM 323 (807)
Q Consensus 244 ~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~ 323 (807)
.|- ++.+.+||...|+|+. +|+..-.++...+.| +|.+|.|++++|+.+
T Consensus 188 ----~~~----~~w~spwG~grpgWhi--------------------ecsam~~~~lg~~~D---ih~gG~Dl~fpHhen 236 (465)
T TIGR00435 188 ----EGE----PKWDSPWGKGRPGWHI--------------------ECSAMNDKYLGDQID---IHGGGVDLIFPHHEN 236 (465)
T ss_pred ----CCC----CCCcCCCCCCCCCcHh--------------------HHHHHHHHhcCCCce---eeccccccccchHHH
Confidence 122 3447899999999942 222222334444556 899999999999999
Q ss_pred HHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHh
Q 003611 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (807)
Q Consensus 324 ~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n 403 (807)
+.|+..++.. .++++.++++||++++|+|||||+||+|++.|+++ .|++|++|||+++ .+++++++|+++.+.++
T Consensus 237 e~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~-~~~~dalR~~ll~-~~~~~~l~fs~~~l~~a-- 311 (465)
T TIGR00435 237 EIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK-NYDPEILRYFLLS-VHYRSPLDFSEELLEAA-- 311 (465)
T ss_pred HHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-HCCHHHHHHHHHh-CCCCCCCccCHHHHHHH--
Confidence 9999988643 25778889999999999999999999999999999 6999999999997 67899999999999988
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 003611 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (807)
Q Consensus 404 ~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~ 482 (807)
...+++|.|+++++...... .. ..+. .. ......+.+.+.++| ++|+++.|+..|+++++.+
T Consensus 312 ~~~~~rl~~~~~~~~~~~~~----~~--~~~~----~~-------~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~ 374 (465)
T TIGR00435 312 KNALERLYKALRVLDTTLAY----SG--NQSL----NK-------FPDEKEFEARFVEAMDDDLNTANALAVLFELAKSI 374 (465)
T ss_pred HHHHHHHHHHHHHHHhhhcc----cc--cccc----cc-------chhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHh
Confidence 45688999999887543211 00 0000 00 011223456777888 6899999999999999999
Q ss_pred H
Q 003611 483 N 483 (807)
Q Consensus 483 N 483 (807)
|
T Consensus 375 n 375 (465)
T TIGR00435 375 N 375 (465)
T ss_pred h
Confidence 9
No 51
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2.2e-50 Score=441.35 Aligned_cols=357 Identities=14% Similarity=0.093 Sum_probs=269.4
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCH
Q 003611 8 NPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSP 87 (807)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p 87 (807)
++.++++|.| +++-++|||.|.|| +.+||||+|+ +|.+|+++||+|+.||+|.|++|+||||+||+.+|+++|++|
T Consensus 24 lt~~~~~f~p-~~~v~~YvCGpTvY--~~~HIGhart-~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~ 99 (411)
T TIGR03447 24 ADGQVRPVEP-GPEAGMYVCGITPY--DATHLGHAAT-YLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDW 99 (411)
T ss_pred CCCCeeeccC-CCcceEEEeCCccC--CCcccccchH-HHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCH
Confidence 6788888998 67778999998777 9999999998 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcc-cccccCCCChhHHHHHHHHHHHHHhCCCeeeeee----eeeecCCCCccccccccccc
Q 003611 88 KEICDKYHVIHKDVYKWFDIS-FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEGT 162 (807)
Q Consensus 88 ~e~~~~~~~~~~~~~~~lgI~-~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g~ 162 (807)
++++++|++.|+++|++|||. +|.|+||| +|.+.++++|++|+++|+||+..+ .+||+++.-.
T Consensus 100 ~ela~~y~~~f~~d~~~Lni~~~d~~~RaT--e~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~---------- 167 (411)
T TIGR03447 100 RELGTSQIDLFREDMEALRVLPPRDYIGAV--ESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATE---------- 167 (411)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccCCC--CCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchh----------
Confidence 999999999999999999986 89999999 458999999999999999999887 7999887321
Q ss_pred CCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHH
Q 003611 163 CPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQA 241 (807)
Q Consensus 163 cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 241 (807)
.||.. .|+.+ .++....-.++ ++. . ++-+.++ +|..|+...
T Consensus 168 ----------~YG~L---s~~~~--~~~~~~~~~~~---~~~----------~-------~~~K~~p~DFaLWK~~~--- 209 (411)
T TIGR03447 168 ----------QFGYE---SGYDR--ATMLELFAERG---GDP----------D-------RPGKRDPLDALLWRAAR--- 209 (411)
T ss_pred ----------ccccc---cCCCH--HHHHhhhcccc---cCc----------c-------cccCCCCcccceeCCCC---
Confidence 12211 01100 01110000000 000 0 0011222 455676421
Q ss_pred HHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchh
Q 003611 242 THAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHT 321 (807)
Q Consensus 242 ~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~ 321 (807)
.|- ++.+.+||-..|+|+. ++...-.++...+.| ||..|.|++++|+
T Consensus 210 ------~~e----~~w~spwG~GRPGWHi--------------------ECsam~~~~lg~~~D---ih~GG~DLifpHh 256 (411)
T TIGR03447 210 ------EGE----PSWDSPFGPGRPGWHI--------------------ECSAIATNRLGAGFD---IQGGGSDLIFPHH 256 (411)
T ss_pred ------CCC----CCccCCCCCCCChhHH--------------------HHHHHHHHHcCCcee---cccCcccccccch
Confidence 121 3458899999999942 222333445544455 8999999999999
Q ss_pred chHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHH
Q 003611 322 VMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (807)
Q Consensus 322 i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~ 401 (807)
.+..|+..|+....++++.|+++|+|+++|+|||||+||+|++.++++.++++|++|||+++ ++++++++||++.+.++
T Consensus 257 eneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls-~~Yr~pl~fs~e~l~~a 335 (411)
T TIGR03447 257 EFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLA-GHYRQDRDWTDAVLAEA 335 (411)
T ss_pred HhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEec-CCCCCCCccCHHHHHHH
Confidence 99999998864322567888888999999999999999999999998745899999999995 89999999999999886
Q ss_pred HhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 003611 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISS 480 (807)
Q Consensus 402 ~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~ 480 (807)
...+++|.+++.+. . . . .+..+...+.++| ++++++.|+..|+++++
T Consensus 336 --~~~l~rl~~~~~~~------------~----~---~-----------~~~~~~~~~~~al~dDln~p~a~~~l~~~~~ 383 (411)
T TIGR03447 336 --EARLARWRAALAAT------------D----A---P-----------DATDLIARLRQHLANDLDTPAALAAVDNWAA 383 (411)
T ss_pred --HHHHHHHHHHHhhc------------c----c---c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34445555544421 0 0 0 1122345666788 68999999999999998
Q ss_pred HHHH
Q 003611 481 EGNA 484 (807)
Q Consensus 481 ~~N~ 484 (807)
.+|.
T Consensus 384 ~~n~ 387 (411)
T TIGR03447 384 AALS 387 (411)
T ss_pred HHHh
Confidence 7765
No 52
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.6e-50 Score=436.74 Aligned_cols=353 Identities=13% Similarity=0.109 Sum_probs=263.8
Q ss_pred CC-CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003611 19 PG-KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVI 97 (807)
Q Consensus 19 ~~-~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~ 97 (807)
+| +-++|+|.|.|| +++||||+|+ +|.+|+++||+|++|++|.|++|+||||+||+.+|+++|++|+++|++|++.
T Consensus 6 ~~~~v~~YvCGpTvY--~~~HIGh~r~-~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~ 82 (384)
T PRK12418 6 PGGTATMYVCGITPY--DATHLGHAAT-YLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIAL 82 (384)
T ss_pred CCCeeEEEecCCCCC--CCCccchhHH-HHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35 557888776555 9999999998 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCc-ccccccCCCChhHHHHHHHHHHHHHhCCCeeeeee----eeeecCCCCcccccccccccCCCCCCCCCC
Q 003611 98 HKDVYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM----QQPYCDTCKRFLADRLVEGTCPFEGCNYES 172 (807)
Q Consensus 98 ~~~~~~~lgI-~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~----~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~ 172 (807)
|.++|++||| ++|.|+|||+ |.+.+++++++|.++|++|+... .+||+++.-.
T Consensus 83 f~~d~~~Lni~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~-------------------- 140 (384)
T PRK12418 83 FREDMEALRVLPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATP-------------------- 140 (384)
T ss_pred HHHHHHHhCCCCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchh--------------------
Confidence 9999999997 8899999995 68999999999999999999998 8999887421
Q ss_pred CCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHcCcc
Q 003611 173 ARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAWLKEGLK 251 (807)
Q Consensus 173 ~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~gl~ 251 (807)
.||.. .++ +.+++....-.++ ++.. +.-+.+| +|..|+... .|-
T Consensus 141 ~YG~l---s~~--~~~~~~~~~~~~~---~~~~-----------------~~~K~~p~DFaLWK~~~---------~~~- 185 (384)
T PRK12418 141 QFGYE---SGY--DRATMLELFAERG---GDPD-----------------RPGKRDPLDALLWRAAR---------PGE- 185 (384)
T ss_pred hcccc---cCC--CHHHHHhhhcccc---cCcc-----------------cccCCCcccceeeccCC---------CCC-
Confidence 12211 000 0001110000000 0000 0011222 445565321 111
Q ss_pred ceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhC
Q 003611 252 VRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (807)
Q Consensus 252 d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~ 331 (807)
++.+.+||...|+|+. ++...-.++...+.| ||..|.|++|+|+.++.|+..|+
T Consensus 186 ---~~w~spwG~GRPGWHi--------------------ECsam~~~~lg~~~D---IH~GG~DL~FPHHeneiaq~~a~ 239 (384)
T PRK12418 186 ---PSWPSPFGPGRPGWHI--------------------ECSAIALNRLGSGFD---IQGGGSDLIFPHHEFSAAHAEAA 239 (384)
T ss_pred ---CcccCCCCCCCChhHH--------------------HHHHHHHHHcCCCcc---cccCccccccchhHhHHHHHHHh
Confidence 3457899999999942 233333445555566 89999999999999999999886
Q ss_pred CCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHH
Q 003611 332 GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLG 411 (807)
Q Consensus 332 ~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~ 411 (807)
....+.++.|++.|+|+.+|+|||||+||+|++.++++.+++++++|||+++ ++++++++||++.+.++. .-++++.
T Consensus 240 ~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls-~~yr~~l~fs~e~l~~a~--~~l~r~~ 316 (384)
T PRK12418 240 TGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLA-GHYRADREWTDAVLAEAE--ARLARWR 316 (384)
T ss_pred cCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEec-cCCCCCcccCHHHHHHHH--HHHHHHH
Confidence 4332466777777899999999999999999999998644777799999994 899999999999998863 3344444
Q ss_pred HHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003611 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQESQ 490 (807)
Q Consensus 412 Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (807)
|++.+. . . . .+..+.+.+.++| ++++++.|+..|+++++.+|.|+...+
T Consensus 317 ~~~~~~------------~-----~--~-----------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 317 AAAALP------------A-----G--P-----------DAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDA 366 (384)
T ss_pred HHHhcc------------c-----c--c-----------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 444321 0 0 0 1123356788888 579999999999999999999997644
No 53
>KOG2241 consensus tRNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-50 Score=404.34 Aligned_cols=170 Identities=63% Similarity=1.035 Sum_probs=165.1
Q ss_pred CCCCCcCCceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccc
Q 003611 638 TTAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKS 717 (807)
Q Consensus 638 ~~~~~~~~~~~~~~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S 717 (807)
++.+..+++++||||||+|+++++||+||.||+++||+|+.++|||||||.+|.+.|+|+||+|+|+|||||+||||++|
T Consensus 86 ~~~~~~p~~~~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~VvvlcNLKPakmRgv~S 165 (255)
T KOG2241|consen 86 PMMEAGPDVSLLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVVLCNLKPAKMRGVKS 165 (255)
T ss_pred CcccCCCCcceeeEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCHHHHhCCeEEEEecccccccccccc
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeeecCCCCeEEEEcCCCCCCCCceeecCCCCCCCCCCCCcchhhHHHhccCceECCCeEEEecCeeeEecCCcee
Q 003611 718 HAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICT 797 (807)
Q Consensus 718 ~gMll~~~~~~~~~~~ll~~~~~~~~G~~v~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~ 797 (807)
+||+||+++.++..||+|.||.++.||+||+|+||+++|+++||||||+||.+|+||+|+++|+|+|||.+|+|+.|.|+
T Consensus 166 ~gMvlcaSs~d~~~VE~l~pP~gs~pGdRv~fegfegePd~~LnPKKKiwE~iqpdl~t~~~~va~yKg~~~~~~~G~~~ 245 (255)
T KOG2241|consen 166 QGMVLCASSPDKSVVEPLAPPAGSKPGDRVTFEGFEGEPDKELNPKKKIWEKIQPDLKTNEEGVATYKGAPFETKKGVCT 245 (255)
T ss_pred ceeEEecCCcccceeeeccCCCCCCCCCeeeecCCCCCcchhcChhhhhHHHhCCCcccccceEEEecCCceeccCceEE
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcccC
Q 003611 798 VSSIQSGSIR 807 (807)
Q Consensus 798 ~~~~~~~~i~ 807 (807)
+.||.||+||
T Consensus 246 a~ti~n~~Ik 255 (255)
T KOG2241|consen 246 AQTISNGGIK 255 (255)
T ss_pred EeeccCCCCC
Confidence 9999999997
No 54
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1e-48 Score=442.93 Aligned_cols=361 Identities=17% Similarity=0.164 Sum_probs=274.8
Q ss_pred CCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003611 8 NPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (807)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (807)
++.++++|.|.. ++-++|+|. |||++.+||||+|+ +|.+|+++||+|+.||+|.|++|+||||+||+.+|+++|++
T Consensus 234 ltr~ke~f~P~~~~~V~mYvCG--PTVYd~~HIGHaRt-~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~s 310 (699)
T PRK14535 234 LTRQKEPFAPIDPENVRMYVCG--MTVYDYCHLGHARV-MVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGET 310 (699)
T ss_pred CCCCeeccccCCCCceEEEecC--CcCCCCCcccchhH-HHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCC
Confidence 678888998875 444566443 68889999999998 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeee-eeeeecCCCCcccccccccccCCC
Q 003611 87 PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPF 165 (807)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~ 165 (807)
|++++++|.+.|.+++++|||.++.+ +|+..+|+..+++++++|.++|++|++. +.||||+++-.
T Consensus 311 p~ela~~y~~~F~~d~~~LnI~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~------------- 376 (699)
T PRK14535 311 IGELTARFIQAMHEDADALGVLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFA------------- 376 (699)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccc-------------
Confidence 99999999999999999999999876 5666799999999999999999999874 58999998421
Q ss_pred CCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHHHHH
Q 003611 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHA 244 (807)
Q Consensus 166 ~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 244 (807)
.||.. .|+ +..++ ..|.+++... .+.++ +|..|++..
T Consensus 377 -------~YG~L---S~~--~~~~l------~~g~rve~d~------------------~Krnp~DFaLWK~sk------ 414 (699)
T PRK14535 377 -------AYGQL---SGK--SLDDL------RAGERVEVDG------------------FKRDPLDFVLWKAAK------ 414 (699)
T ss_pred -------ccccc---cCC--ChHHh------cCCCcccccc------------------ccCCccccceeccCC------
Confidence 12221 111 11111 1133222110 01222 455676431
Q ss_pred HHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchH
Q 003611 245 WLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (807)
Q Consensus 245 ~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~ 324 (807)
.|- ++++.+||-..|+|+ .++.....+|...+.| ||.+|.|++|+||.+.
T Consensus 415 ---~Ge----p~W~SPWG~GRPGWH--------------------IECSAMs~~~LG~~~D---IHgGG~DLiFPHHENE 464 (699)
T PRK14535 415 ---AGE----PAWESPWGNGRPGWH--------------------IECSAMSENLFGDTFD---IHGGGADLQFPHHENE 464 (699)
T ss_pred ---CCC----CCccCCCCCCCCchH--------------------HHHHHHHHHHcCCcce---eECCccccCCCCCccH
Confidence 232 234789999999994 2333334456654556 9999999999999999
Q ss_pred HHHhhhCCCC---------------cccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCC
Q 003611 325 PSTLLGTGEN---------------WTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389 (807)
Q Consensus 325 pa~l~a~~~~---------------~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~ 389 (807)
.|+..|+... -+..++|+++||++++|+|||||+||+|++.++++ .|++|++|||+++ +++++
T Consensus 465 iAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe-~ygpdalRl~lLs-shYRs 542 (699)
T PRK14535 465 IAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLK-QYDPEVVRFFILR-AHYRS 542 (699)
T ss_pred HHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHH-hCCHHHHHHHHHc-CCCCC
Confidence 9999885321 02467899999999999999999999999999999 6999999999998 78999
Q ss_pred CccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccH
Q 003611 390 DTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKL 468 (807)
Q Consensus 390 D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~ 468 (807)
+++||++.+.++ ...++++.+++.++.. . . + . +...+..+.+.+.++| ++|++
T Consensus 543 pL~fS~e~Le~A--k~~l~Rl~~~l~~~~~---~------~---~----~--------~~~~l~~~~~~f~~AL~DDlnt 596 (699)
T PRK14535 543 PLNYSDAHLDDA--KGALTRLYTTLKNTPA---A------E---F----M--------LSENVNDYTRRFYAAMNDDFGT 596 (699)
T ss_pred CCCcCHHHHHHH--HHHHHHHHHHHHhhhh---c------c---c----h--------hhhhHHHHHHHHHHHHhhccCh
Confidence 999999999987 3445555555443210 0 0 0 0 0123345667888889 68999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003611 469 KQGLKTAMSISSEGNAY 485 (807)
Q Consensus 469 ~~al~~i~~l~~~~N~y 485 (807)
+.|+..|+++++.+|.+
T Consensus 597 p~Ala~L~~lvk~iN~~ 613 (699)
T PRK14535 597 VEAVAVLFELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 55
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-47 Score=416.12 Aligned_cols=365 Identities=18% Similarity=0.221 Sum_probs=282.6
Q ss_pred CCCCCCCCCCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC
Q 003611 7 ENPAAPPPKLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNC 85 (807)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~ 85 (807)
-++.++.+|.|.. ++-++|||. |||++.+||||+|+ +|..|+++||++.+||.|.||.+++|.++||..+|.+.|.
T Consensus 7 Tltr~ke~F~P~~~~~V~mYvCG--pTVYd~~HIGhaRt-~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~ 83 (464)
T COG0215 7 TLTRQKEEFVPIDPGKVKMYVCG--PTVYDYAHIGHART-YVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGL 83 (464)
T ss_pred cCccceecccCCCCCeEEEEecC--CccCCccccccCcc-eehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCC
Confidence 3678899999975 555677665 68999999999997 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCc-ccccccCCCChhHHHHHHHHHHHHHhCCCeeee-eeeeeecCCCCcccccccccccC
Q 003611 86 SPKEICDKYHVIHKDVYKWFDI-SFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN-TMQQPYCDTCKRFLADRLVEGTC 163 (807)
Q Consensus 86 ~p~e~~~~~~~~~~~~~~~lgI-~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~-~~~~~y~~~~~~~l~d~~v~g~c 163 (807)
++.+++++|.+.|.+++++||| .+|.+.|.| +|...+.+++++|.++|++|.. .+.|+|+++.-.-
T Consensus 84 ~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraT--e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~---------- 151 (464)
T COG0215 84 SIREVAERYIAAFFEDMDALNVLPPDIEPRAT--EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKD---------- 151 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCcccCcHh--hCHHHHHHHHHHHHHCCceEEecCCcEEEecccchh----------
Confidence 9999999999999999999999 568898888 8999999999999999999998 6799999874321
Q ss_pred CCCCCCCCCCCCcchhccCC-CCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHH
Q 003611 164 PFEGCNYESARGDQCENCGK-LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQA 241 (807)
Q Consensus 164 p~~~c~~~~~~g~~ce~cG~-~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 241 (807)
||.. .|+ .+ +++. .|..+..... +++| +|..|+..
T Consensus 152 ----------YG~L---S~~~~l--e~l~------~gar~~~~~~------------------Krnp~DFvLWK~s---- 188 (464)
T COG0215 152 ----------YGKL---SGRDSL--EELQ------AGARVEVDEE------------------KRNPLDFVLWKAA---- 188 (464)
T ss_pred ----------hHhh---cCCCCh--hHHh------hccccccccc------------------cCCchhheeeccC----
Confidence 2210 000 00 0111 1111111111 1122 34456532
Q ss_pred HHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchh
Q 003611 242 THAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHT 321 (807)
Q Consensus 242 ~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~ 321 (807)
+.|-+. .+.+||...|+|+. +++..-.++..+..| ||.+|.|++|+||
T Consensus 189 -----k~gEp~----W~SPWG~GRPGWHI--------------------ECSaM~~~~LG~~~D---IHgGG~DLiFPHH 236 (464)
T COG0215 189 -----KPGEPS----WDSPWGKGRPGWHI--------------------ECSAMSTKYLGETFD---IHGGGSDLIFPHH 236 (464)
T ss_pred -----CCCCCC----CCCCCCCCCCchhH--------------------HHHHHHHHHhCCCcc---eecCcccccCCCc
Confidence 123333 48899999999952 333333445544555 9999999999999
Q ss_pred chHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHH
Q 003611 322 VMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAK 401 (807)
Q Consensus 322 i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~ 401 (807)
.+..|+..|+....++.++|+++|||+++|+|||||+||+|++.|+++ .|++++|||||++ ++|+++++||++.+.++
T Consensus 237 ENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~-~~~p~~lR~~lls-~HYR~pl~fsee~L~~A 314 (464)
T COG0215 237 ENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK-KYDPEVLRLFLLS-SHYRSPLDFSEELLEEA 314 (464)
T ss_pred ccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh-hcCHHHHHHHHHH-HHhCCccccCHHHHHHH
Confidence 999999999876335689999999999999999999999999999999 6999999999998 89999999999999998
Q ss_pred HhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 003611 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAMSISS 480 (807)
Q Consensus 402 ~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~~l~~ 480 (807)
...+..|.|++.++...... .. . .....+..++.++| ++|+++.|+..++++++
T Consensus 315 --~~~l~rl~~~~~~~~~~~~~------------~~---~--------~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~ 369 (464)
T COG0215 315 --KKALERLYNALRRLRDLAGD------------AE---L--------ADLKEFEARFREALDDDFNTPKALAVLFELAK 369 (464)
T ss_pred --HHHHHHHHHHHHHHHhhccc------------cc---c--------chhHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 45567777777765422111 00 0 02334556678888 68999999999999999
Q ss_pred HHHHHHHh
Q 003611 481 EGNAYLQE 488 (807)
Q Consensus 481 ~~N~yi~~ 488 (807)
.+|..++.
T Consensus 370 ~~~~~~~~ 377 (464)
T COG0215 370 EINRLLEE 377 (464)
T ss_pred HHhhhhhc
Confidence 88776654
No 56
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-42 Score=364.47 Aligned_cols=379 Identities=16% Similarity=0.146 Sum_probs=286.0
Q ss_pred CCCCCCCCCCCCCCCC-cEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHH-HCCCceeEecCcchhhHHHHHHHH--H
Q 003611 7 ENPAAPPPKLPIPGKR-NILITSALPYVNNVPHLGNIIGSVLSADVFARFCR-LRGYNAIYICGTDEYGTATETKAM--E 82 (807)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r-~~G~~V~~v~G~D~hG~~i~~~A~--~ 82 (807)
-|++++.+|.|..|++ .+|+| + |||++..||||||+ ||..||+.||++ .-||+|.||+|++|.++||+.+|+ .
T Consensus 40 slTr~Ke~fip~~~~~v~wY~C-G-pTvYD~SHmGHArs-YVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~ 116 (586)
T KOG2007|consen 40 SLTRQKEVFIPNNGNKVTWYIC-G-PTVYDSSHMGHARS-YVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEE 116 (586)
T ss_pred ccccccceeeeCCCCeEEEEEe-c-Ccccchhhhhhhhh-hhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhh
Confidence 4789999999998775 45544 3 79999999999998 789999999999 679999999999999999999997 2
Q ss_pred cCCCHHHHHH---HHHHHHHHHHhhcCccc-ccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccc
Q 003611 83 DNCSPKEICD---KYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158 (807)
Q Consensus 83 ~g~~p~e~~~---~~~~~~~~~~~~lgI~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~ 158 (807)
.+..|..+.+ .|.++|.++|.+|++-+ |...|.+ +|...+..+++++++||+.|...+.|||++..-..
T Consensus 117 m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVS--eyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~----- 189 (586)
T KOG2007|consen 117 MGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVS--EYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPH----- 189 (586)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhh--hchHHHHHHHHHHHhCCceeeeCCcEEEecccccc-----
Confidence 3445544444 57799999999999955 6666666 89999999999999999999999999999864220
Q ss_pred ccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChH
Q 003611 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQN 237 (807)
Q Consensus 159 v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~ 237 (807)
.||..- |.. +.+..+. |... ++ -+.++ +|..|+..
T Consensus 190 --------------~YgKL~---G~~---~~~~~gE----g~l~-----------ds---------~KR~p~DFALWKAs 225 (586)
T KOG2007|consen 190 --------------SYGKLV---GQR---KNLQEGE----GVLS-----------DS---------RKRSPADFALWKAS 225 (586)
T ss_pred --------------hhhhhc---Cch---hhcccCc----Cccc-----------cc---------cCCChhhhhhhhhc
Confidence 111100 100 0000000 1000 00 00111 23334322
Q ss_pred HHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccc
Q 003611 238 AIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNV 317 (807)
Q Consensus 238 ~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii 317 (807)
+.|-+-| ..+||-..|+|+.|..+| -..+.....| ||-+|.|+.
T Consensus 226 ---------K~gEP~W----eSPWG~GRPGWHIECSaM--------------------as~~lG~~lD---IH~GG~DL~ 269 (586)
T KOG2007|consen 226 ---------KPGEPSW----ESPWGKGRPGWHIECSAM--------------------ASAILGSQLD---IHGGGIDLA 269 (586)
T ss_pred ---------CCCCCCC----CCCCCCCCCCceeeeHHH--------------------HHHhhccccc---eecCccccc
Confidence 2233333 679999999996433221 1222322345 899999999
Q ss_pred cchhchHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHH
Q 003611 318 PFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWAD 397 (807)
Q Consensus 318 ~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~ 397 (807)
|+||.+..|+..|+...-.+.++++++|||+++|+|||||++|+|++.++++ .|+|++||++||. ..+.+++|||...
T Consensus 270 FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk-~~sp~qLRl~fl~-~~wr~~ldYs~s~ 347 (586)
T KOG2007|consen 270 FPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALK-KYSPRQLRLAFLL-HQWRSPLDYSDST 347 (586)
T ss_pred CCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHH-hcCHHHHHHHHHH-HHhcCcCCchHHH
Confidence 9999999999999865535789999999999999999999999999999999 6999999999998 7789999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Q 003611 398 LQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAM-EKVKLKQGLKTAM 476 (807)
Q Consensus 398 l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~-e~~~~~~al~~i~ 476 (807)
+..+ ..+...+.||+.-+..+... ..| .....+.+.++.+.+.....++..++ ++|+.+.+++.+.
T Consensus 348 m~~a--~q~e~~~~~ff~~~~al~~~--------~~~---~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~ 414 (586)
T KOG2007|consen 348 MEQA--LQLEKSLNNFFLDVKALLRG--------AKP---FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIR 414 (586)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHhc--------cch---hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHH
Confidence 9887 56777788888766655443 111 01234467788999999989998888 8999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 003611 477 SISSEGNAYLQESQ 490 (807)
Q Consensus 477 ~l~~~~N~yi~~~~ 490 (807)
+++..+|.|+....
T Consensus 415 ~lvs~~N~~i~~~~ 428 (586)
T KOG2007|consen 415 ELVSQGNAYIRESG 428 (586)
T ss_pred HHHhhhhHHHHHhc
Confidence 99999999998765
No 57
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=9.7e-43 Score=362.45 Aligned_cols=295 Identities=18% Similarity=0.215 Sum_probs=203.2
Q ss_pred CCCCC-CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHH
Q 003611 15 KLPIP-GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDK 93 (807)
Q Consensus 15 ~~~~~-~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~ 93 (807)
|.|.. ++-++|+|. |||++.+||||+|+ +|.+|++.||++..||+|.||.|++|.++||+.+|+++|+++++++++
T Consensus 1 F~p~~~~~v~~Y~CG--PTVYd~~HiGhaR~-~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~ 77 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCG--PTVYDYAHIGHART-YVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARR 77 (300)
T ss_dssp ---SCTTEEEEEEEE--EBTTS--BHHHHHH-HHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHH
T ss_pred CcCCCCCeEEEEcCC--CCCCCCCCCcceee-eeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHH
Confidence 45553 444566655 68889999999997 688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccc-ccccCCCChhHHHHHHHHHHHHHhCCCeeeee-eeeeecCCCCcccccccccccCCCCCCCCC
Q 003611 94 YHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENT-MQQPYCDTCKRFLADRLVEGTCPFEGCNYE 171 (807)
Q Consensus 94 ~~~~~~~~~~~lgI~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~-~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~ 171 (807)
|.+.|.+++++|||.. +.+.|.| +|...+.+++++|.++|++|... +.+||+++.-.
T Consensus 78 y~~~f~~dm~~Lnv~~p~~~prat--e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~------------------- 136 (300)
T PF01406_consen 78 YEEEFFEDMKALNVLPPDHYPRAT--EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFP------------------- 136 (300)
T ss_dssp HHHHHHHHHHHTT----SEEEEGG--GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGST-------------------
T ss_pred HHHHHHHHHHHcCCCCCccccchh--ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecccc-------------------
Confidence 9999999999999976 6788888 79999999999999999999999 99999986311
Q ss_pred CCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCC-CCCCCChHHHHHHHHHHHcCc
Q 003611 172 SARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMS-VAGSWSQNAIQATHAWLKEGL 250 (807)
Q Consensus 172 ~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~gl 250 (807)
.||... +..+ .++. .|..+.. +.-+.++ +|..|+... .+-
T Consensus 137 -~YG~Ls---~~~~--~~l~------~~~~~~~------------------~~~K~~p~DFaLWK~~~---------~~e 177 (300)
T PF01406_consen 137 -DYGKLS---NQDL--EDLE------AGARVEV------------------DYEKRNPRDFALWKAAK---------PGE 177 (300)
T ss_dssp -TTTTTT---T-SH--HHHH------HCHHHTT-------------------TTSSSTT-EEEEEE-----------TTS
T ss_pred -cccccc---ccch--hhHH------hhhhccc------------------ccccCCCcceeeeeccc---------ccC
Confidence 122110 0000 0000 0000000 0011112 333455321 111
Q ss_pred cceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhh
Q 003611 251 KVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLG 330 (807)
Q Consensus 251 ~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a 330 (807)
++.+.+||-..|+|.. ++...-.++...+.| ||.+|.|++|+|+.+..|+..|
T Consensus 178 ----~~w~spwG~GRPGWHi--------------------ECsam~~~~lG~~~D---IH~GG~DL~FPHHENEiAqs~a 230 (300)
T PF01406_consen 178 ----PSWDSPWGKGRPGWHI--------------------ECSAMSMKYLGDTFD---IHGGGIDLIFPHHENEIAQSEA 230 (300)
T ss_dssp ------B--TTSSEEE-HHH--------------------HHHHHHHHHHTTSEE---EEEEEGGGTTTHHHHHHHHHHH
T ss_pred ----CcccCCCccCcCceee--------------------ehHHHHHHHcCCCce---EEccccccCCCCccchHHHHHH
Confidence 4557899999999942 222233445543445 9999999999999999999988
Q ss_pred CCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHH
Q 003611 331 TGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKS 402 (807)
Q Consensus 331 ~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~ 402 (807)
+... ++.+.|+++|||+++|+|||||+||+|+++|+++ +|+++++||+|++ ++|+++++||++.+.++-
T Consensus 231 ~~g~-~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~-~~~~~~lR~~~l~-~hYr~~l~~s~~~l~~A~ 299 (300)
T PF01406_consen 231 ATGK-PFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLK-KYSPDALRLFLLS-THYRKPLNFSEENLEEAK 299 (300)
T ss_dssp HHSS--SEEEEEEE--EEETTCE--TTTT---BHHHHHT-TS-HHHHHHHHHT-S-TTS-EEE-HHHHHHHH
T ss_pred hhCc-hHHHHHHHHHHHhhcCccccccCCCEEEHHHHhh-cCCHHHHHHHHhc-CCCCCccccCHHHHHHhc
Confidence 7543 5778999999999999999999999999999998 6999999999998 899999999999998863
No 58
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-39 Score=358.38 Aligned_cols=487 Identities=20% Similarity=0.275 Sum_probs=347.0
Q ss_pred CCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc--------------
Q 003611 18 IPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-------------- 83 (807)
Q Consensus 18 ~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~-------------- 83 (807)
..++++|++|-|.||.||.+||||+.+ .-..|+..-|+|++|++|+|..|++|.|.||...|.+.
T Consensus 40 ~~~~~Kff~tfpyPYMNG~LHlGH~Fs-lSK~eFa~~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~ 118 (1080)
T KOG0437|consen 40 QKSKPKFFVTFPYPYMNGRLHLGHAFS-LSKVEFASGYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFP 118 (1080)
T ss_pred ccccCceeEeccccccCceeeccceee-hhhhHHHHHHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCc
Confidence 456789999999999999999999997 45789999999999999999999999999998777652
Q ss_pred ----------------------------------------------CC---------CHHHHHHHHHHHHHHHHhhcCcc
Q 003611 84 ----------------------------------------------NC---------SPKEICDKYHVIHKDVYKWFDIS 108 (807)
Q Consensus 84 ----------------------------------------------g~---------~p~e~~~~~~~~~~~~~~~lgI~ 108 (807)
|+ +|..|..++-..-.+++++||..
T Consensus 119 ~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~ 198 (1080)
T KOG0437|consen 119 EEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLG 198 (1080)
T ss_pred hhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCC
Confidence 11 23445556666778999999999
Q ss_pred cc---cccCCC-ChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccc---cccCCCC---------------
Q 003611 109 FD---NFGRTS-TPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV---EGTCPFE--------------- 166 (807)
Q Consensus 109 ~D---~f~rT~-~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v---~g~cp~~--------------- 166 (807)
.| .|+.|. +|+|..+|+|.|++|.+.|.|..+..-.-||+.+++.+.|+.- +|.-|.+
T Consensus 199 iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~ 278 (1080)
T KOG0437|consen 199 IDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKA 278 (1080)
T ss_pred cceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhh
Confidence 88 477674 8999999999999999999999999999999999999888642 3322210
Q ss_pred -------------------------CC-------------------------------------------------CC--
Q 003611 167 -------------------------GC-------------------------------------------------NY-- 170 (807)
Q Consensus 167 -------------------------~c-------------------------------------------------~~-- 170 (807)
.| |+
T Consensus 279 l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~ 358 (1080)
T KOG0437|consen 279 LSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDL 358 (1080)
T ss_pred ccccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhh
Confidence 00 00
Q ss_pred ---------------------------------------C---------------------------------CCCCcch
Q 003611 171 ---------------------------------------E---------------------------------SARGDQC 178 (807)
Q Consensus 171 ---------------------------------------~---------------------------------~~~g~~c 178 (807)
. ..+||.|
T Consensus 359 iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ 438 (1080)
T KOG0437|consen 359 IGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLA 438 (1080)
T ss_pred cCCcccCcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhh
Confidence 0 0113221
Q ss_pred h--ccC-------------------------------------CCCCc------ccc------------CCCccccCCCc
Q 003611 179 E--NCG-------------------------------------KLLNA------TDL------------KDPKCKVCRNA 201 (807)
Q Consensus 179 e--~cG-------------------------------------~~l~~------~el------------~~p~c~~~g~~ 201 (807)
. .|- +-+.. ++| ..++-.|||..
T Consensus 439 ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGde 518 (1080)
T KOG0437|consen 439 AEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDE 518 (1080)
T ss_pred HHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEEEeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCc
Confidence 1 010 00000 011 12456799999
Q ss_pred eEEeeecceeEec--cchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccc------cCCc
Q 003611 202 PQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLER------FKEK 273 (807)
Q Consensus 202 ~~~~~~~~~f~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~------~~~~ 273 (807)
.++..++|||++. +.|+....+.++....+..-.++......+||. .|.+||...-|+.+|+|. ..+.
T Consensus 519 CiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~----~wacsRsyGLGTrlPWD~qyLvESLSDS 594 (1080)
T KOG0437|consen 519 CIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLG----QWACSRSYGLGTRLPWDEQYLVESLSDS 594 (1080)
T ss_pred eEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHH----hhhhhccccCCCCCCCcHHHHHHhcchh
Confidence 9999999999998 568888888888876443333444555678865 599999999999999874 2344
Q ss_pred EEEEEe---------------------------cccchhhhcccCCc--------------hhHhhhcCCCCCcceEEEE
Q 003611 274 VFYVWF---------------------------DAPIGYVSITSCYT--------------NEWEQWWKNPENVELYQFM 312 (807)
Q Consensus 274 viyVWf---------------------------DA~~~yis~~~~~~--------------~~~~~~W~~p~d~~~ih~i 312 (807)
+||.-| |..++|+.....++ .+|+. |. |.| +.+.
T Consensus 595 TIYmAyYTvaHll~~d~~g~~~~plgi~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y-~Y-PiD---lrvs 669 (1080)
T KOG0437|consen 595 TIYMAYYTVAHLLHRDLYGKVEGPLGIKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEY-FY-PID---LRVS 669 (1080)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhc-cc-cee---eeec
Confidence 444322 23344543322221 24554 44 778 7899
Q ss_pred EeccccchhchHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcc
Q 003611 313 GKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTL 392 (807)
Q Consensus 313 GkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~ 392 (807)
|||++..|..|+.--..|+-....+|+.|.+||||+++++|||||.||+.+.++.++ +||+|+.|+.|+..+.-..|.|
T Consensus 670 GKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaie-KFgad~tRlalAdaGD~veDAN 748 (1080)
T KOG0437|consen 670 GKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIE-KFGADGTRLALADAGDGVEDAN 748 (1080)
T ss_pred cccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHH-HhCccceeeeeecccCCcccch
Confidence 999998776543211111111235899999999999999999999999999999999 7999999999999888788999
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 003611 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (807)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al 472 (807)
|.......+ +-.|.+.+.-+-.|+... +. +... ......|+-+.++++.++....+++++..|+.|+
T Consensus 749 F~ea~AnAa-----ILRLyt~~ew~eEm~~~~-----s~-LrtG--p~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aL 815 (1080)
T KOG0437|consen 749 FVEANANAA-----ILRLYTYVEWIEEMCENR-----SS-LRTG--PASTFADRVFENEMNALIAKTERAYEDTLFKDAL 815 (1080)
T ss_pred hHHhcccHH-----HHHHHHHHHHHHHHHhhH-----Hh-hccC--chhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 987664443 334556666666665531 11 1111 1123468899999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCCCC
Q 003611 473 KTAM-SISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQP 539 (807)
Q Consensus 473 ~~i~-~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~~~ 539 (807)
..-+ ++...-..|-.... .. +.. .+++..+.+.+.||+||.||+|+.||+.++.++
T Consensus 816 K~Gfyd~qaArD~Yrel~g-------~~--mh~--dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~ 872 (1080)
T KOG0437|consen 816 KYGFYDLQAARDMYRELCG-------EG--MHR--DLVFRFIETQTLLLAPICPHLAEYIWRTVLKKN 872 (1080)
T ss_pred HhhhHHHHHHHHHHHHHhc-------cc--ccH--HHHHHHHHHHHHHHhccchHHHHHHHHHhccCC
Confidence 8765 55444444433321 00 111 234556778889999999999999999998653
No 59
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=9.2e-39 Score=325.15 Aligned_cols=206 Identities=21% Similarity=0.183 Sum_probs=173.8
Q ss_pred CCCCCCCCCCC-CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCC
Q 003611 8 NPAAPPPKLPI-PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCS 86 (807)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~ 86 (807)
+++++.+|.|. +++.++|+|.|.|| |++||||+|+ ++.+|+++||+|++|++|+|++|+|+||+||+.+|+++|++
T Consensus 6 ~~~~~~~~~p~~~~~~~~y~~gpt~y--~~~HiGH~r~-~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~ 82 (213)
T cd00672 6 LTRQKEEFVPLNPGLVTMYVCGPTVY--DYAHIGHART-YVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLS 82 (213)
T ss_pred CCCceeeeecCCCCCceEEEeCCccC--CCcccccchh-HHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCC
Confidence 56777788775 45667888886555 8999999997 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCccc-ccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCC
Q 003611 87 PKEICDKYHVIHKDVYKWFDISF-DNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPF 165 (807)
Q Consensus 87 p~e~~~~~~~~~~~~~~~lgI~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~ 165 (807)
|+++++++++.|+++|++|||++ |.|+|| |. ..
T Consensus 83 p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt-----------------------------Wh-~e---------------- 116 (213)
T cd00672 83 WKEVADYYTKEFFEDMKALNVLPPDVVPRV-----------------------------WH-IE---------------- 116 (213)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcceee-----------------------------hh-HH----------------
Confidence 99999999999999999999999 999999 32 11
Q ss_pred CCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHH
Q 003611 166 EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAW 245 (807)
Q Consensus 166 ~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 245 (807)
|. .+..++
T Consensus 117 --c~----------------------------------------------------------------------am~~~~ 124 (213)
T cd00672 117 --CS----------------------------------------------------------------------AMAMKY 124 (213)
T ss_pred --HH----------------------------------------------------------------------HHHHHH
Confidence 10 011111
Q ss_pred HHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHH
Q 003611 246 LKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFP 325 (807)
Q Consensus 246 l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~p 325 (807)
+. .+.| +|..|.|++++|+.++.
T Consensus 125 lg------------------------------------------------------~~~d---ih~~G~Dl~fpH~~~~~ 147 (213)
T cd00672 125 LG------------------------------------------------------ETFD---IHGGGVDLIFPHHENEI 147 (213)
T ss_pred cC------------------------------------------------------CCcc---EEeecCCCCcChHHHHH
Confidence 11 1345 89999999999999999
Q ss_pred HHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCcccc
Q 003611 326 STLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (807)
Q Consensus 326 a~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs 394 (807)
|+..++... +.++.+++.|++.++|+|||||+||+|++.|+++ .|++|++|||+++ .++.++++|+
T Consensus 148 a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~-~~~~da~R~~~l~-~~~~~~l~f~ 213 (213)
T cd00672 148 AQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALK-KYDPEVLRLALLS-SHYRSPLDFS 213 (213)
T ss_pred HHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHH-HcCHHHHHHHHHh-CCcCCCCCCC
Confidence 999886443 4567777778999999999999999999999999 6999999999998 5578899886
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=333.35 Aligned_cols=338 Identities=15% Similarity=0.128 Sum_probs=250.8
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003611 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (807)
Q Consensus 20 ~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (807)
.++++.|..+.|+|||++||||+|++ +.+|+++|++|+.||+|.++.++||+|++|...|.+.+..++++++.+.+.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~-iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSA-VIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHH-HHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999985 66999999999999999999999999999999999998899999999999999
Q ss_pred HHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCee-eeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcch
Q 003611 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLI-ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (807)
Q Consensus 100 ~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy-~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~c 178 (807)
+++++|||.+|.|.++++..|...+++++++|.++|++| +..+.+|++.. .|..+
T Consensus 188 ~~l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~--~~~~~---------------------- 243 (507)
T PRK01611 188 EDLDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT--EFGDD---------------------- 243 (507)
T ss_pred HHHHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch--hhCCC----------------------
Confidence 999999999999999998888889999999999999999 76666665432 22100
Q ss_pred hccCCCCCccccCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeec
Q 003611 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (807)
Q Consensus 179 e~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (807)
+..+.+++...+-.- ...+..++.. ..|
T Consensus 244 --------------------~~~vl~ksdG~~~Y~----t~Dia~~~~k---------------------------~~~- 271 (507)
T PRK01611 244 --------------------KDRVLIKSDGTYTYF----TRDIAYHLYK---------------------------FER- 271 (507)
T ss_pred --------------------CCeEEEECCCCccch----HHHHHHHHHH---------------------------Hhh-
Confidence 122233332222110 0111111100 000
Q ss_pred cCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccC
Q 003611 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLM 338 (807)
Q Consensus 259 ~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p 338 (807)
-++.||||-....+| |..++ +.+.++|.. ++
T Consensus 272 ------------~d~~i~V~g~~q~~h---------------------------------f~~~~--~~~~~lg~~--~~ 302 (507)
T PRK01611 272 ------------FDRVIYVVGADHHGH---------------------------------FKRLK--AALKALGYD--PD 302 (507)
T ss_pred ------------cCEEEEEECCChHHH---------------------------------HHHHH--HHHHHcCCC--cc
Confidence 034555553333222 22222 456666753 33
Q ss_pred e-EEEee---ceee-cCCCccccccCCccChhhhhhcCCCc----------------hhHHHHHHhcCCCCCCccccHHH
Q 003611 339 K-TISVT---EYLN-YESGKFSKSKGIGVFGNDAKDTNIPV----------------EVWRYYLLTNRPEVSDTLFTWAD 397 (807)
Q Consensus 339 ~-~i~~h---g~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~----------------D~lR~~ll~~~~~~~D~~Fs~~~ 397 (807)
. .++.| |++. .+|+|||||+||+|++.|+++..++. |++||++++. ..++|.+|+|+.
T Consensus 303 ~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~-~~~~~~~Fd~~~ 381 (507)
T PRK01611 303 ALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSR-SRDKDLDFDLDL 381 (507)
T ss_pred cceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhc-CCCCCCccCHHH
Confidence 2 44445 5554 47889999999999999999933888 9999999985 558999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 003611 398 LQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMS 477 (807)
Q Consensus 398 l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~ 477 (807)
+....+.... .+.+...|+.+++.+..+ .+..+... ....+.+++|+..+..+...+.+++++++++.+++.+++
T Consensus 382 ~~~~~~~~~~-yvqYa~aR~~sil~k~~~---~~~~~~~~-~l~~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~ 456 (507)
T PRK01611 382 ALSFEGNNPP-YVQYAHARICSILRKAAE---AGIDLLLA-LLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYE 456 (507)
T ss_pred HHhhcCCCcH-HHHHHHHHHHHHHHhhhc---cCcccccc-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 8765444444 788888999999887211 01111101 112467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 003611 478 ISSEGNAYLQES 489 (807)
Q Consensus 478 l~~~~N~yi~~~ 489 (807)
|+...|.|++..
T Consensus 457 la~~f~~fY~~~ 468 (507)
T PRK01611 457 LAGAFHSFYNRV 468 (507)
T ss_pred HHHHHHHHHHHC
Confidence 999999999755
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=4.6e-34 Score=309.09 Aligned_cols=271 Identities=20% Similarity=0.269 Sum_probs=194.7
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchh------------------hHHHHHHHHH
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAME 82 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~h------------------G~~i~~~A~~ 82 (807)
+.+++|+||+ ||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+| |.|+...+..
T Consensus 18 ~~~~~v~tgi-~psG~~HIG~~~e-~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGI-SPSGHIHIGNFRE-VITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCC-CCCCCcccCccHH-HHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 4579999998 5999999999998 688999999999999999999999999 8999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccccccc
Q 003611 83 DNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (807)
Q Consensus 83 ~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (807)
.|+.+ +|++++.+.|++.|+.|||++|.+.+|....+..+.+.++..|.+++.|..--.+.-=-+..++|+|
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P------- 167 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYP------- 167 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCcee-------
Confidence 99988 9999999999999999999999776666666778999999999999998632211111122233333
Q ss_pred CCCCCCCCCCCCCcchhccCCCCCcc---c----cCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCCC
Q 003611 163 CPFEGCNYESARGDQCENCGKLLNAT---D----LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235 (807)
Q Consensus 163 cp~~~c~~~~~~g~~ce~cG~~l~~~---e----l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~ 235 (807)
+...|++||+.-.+. + -+...| .||+..+..-...
T Consensus 168 -----------~~p~c~~cg~~~~~v~~~d~~~~~v~y~c-~cG~~g~~~~~~g-------------------------- 209 (353)
T cd00674 168 -----------FMPYCEKCGKDTTTVEAYDAKAGTVTYKC-ECGHEETVDIRTG-------------------------- 209 (353)
T ss_pred -----------eeeecCCcCcceeEEEEEeCCCCeEEEEc-CCCCEEEEeecCC--------------------------
Confidence 345677888542111 0 022345 3666544311100
Q ss_pred hHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEec
Q 003611 236 QNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKD 315 (807)
Q Consensus 236 ~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkD 315 (807)
+| .+.|-+..|.- |+.-..| +-..|+|
T Consensus 210 ------------~~--------KL~Wr~dW~~r------------------------------W~~l~Vd---~E~~GkD 236 (353)
T cd00674 210 ------------RG--------KLTWRVDWPMR------------------------------WAILGVD---FEPFGKD 236 (353)
T ss_pred ------------Cc--------ccCCCCCchhh------------------------------hhhcCCC---EEeeCcc
Confidence 00 23344443421 1111344 5779999
Q ss_pred cccc---hhchHHHHhh-hCCCCcccCeEEEeeceeecCCC-ccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCC
Q 003611 316 NVPF---HTVMFPSTLL-GTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSD 390 (807)
Q Consensus 316 ii~f---H~i~~pa~l~-a~~~~~~~p~~i~~hg~l~~~G~-KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D 390 (807)
+.-. +.... +++. .+|.+ +|.. ++|||++++|. |||||+||+|++.|+++ .+++|++|||+++.....+|
T Consensus 237 h~~~ggs~~~~~-~i~~~ilg~~--~P~~-~~ye~V~l~gg~KMSKSkGnvI~~~dll~-~~~~dalR~~~l~~~~~~~~ 311 (353)
T cd00674 237 HASAGGSYDTGK-EIAREIFGGE--PPVP-VMYEFIGLKGGGKMSSSKGNVITPSDWLE-VAPPEVLRYLYARRKNPEKH 311 (353)
T ss_pred ccccccHHHHHH-HHHHHHhCCC--CCeE-EEeeeEEeCCCCccCCCCCCcCCHHHHHH-HhChHHHHHHHHhCCCCCCC
Confidence 8643 22222 3333 55543 5544 77999998776 99999999999999999 59999999999986546889
Q ss_pred ccccHHH
Q 003611 391 TLFTWAD 397 (807)
Q Consensus 391 ~~Fs~~~ 397 (807)
++|+++.
T Consensus 312 i~Fd~~~ 318 (353)
T cd00674 312 IGFDLDI 318 (353)
T ss_pred CCcChhH
Confidence 9999853
No 62
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=1.1e-30 Score=304.27 Aligned_cols=352 Identities=15% Similarity=0.168 Sum_probs=248.4
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHH--------------------
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA-------------------- 80 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A-------------------- 80 (807)
++++.|.-+-|+|+|++||||+|++ +.+|+++|+++..||+|.-..-+.|.|..+-.-+
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~-~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~ 189 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNA-IIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDH 189 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHH-HHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChH
Confidence 4678888999999999999999995 5699999999999999974444444333221111
Q ss_pred ----------HH------------------cCCCH------HHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHH
Q 003611 81 ----------ME------------------DNCSP------KEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (807)
Q Consensus 81 ----------~~------------------~g~~p------~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~ 126 (807)
+. +.-++ +.+++...+.|++++++|||.||.|....+..+...+..
T Consensus 190 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~~ 269 (566)
T TIGR00456 190 GLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVPK 269 (566)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHHH
Confidence 00 01112 345667788999999999999998876666677778999
Q ss_pred HHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEee
Q 003611 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (807)
Q Consensus 127 ~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~ 206 (807)
+++.|.++|++|++ +..|.+... +|+. + ...+..++
T Consensus 270 v~~~L~~~g~~~~~-Ga~~~~~~~-----------------------~~d~---------------~-----~~~vl~ks 305 (566)
T TIGR00456 270 VLEDLKEKGLVVED-GALWLDLTL-----------------------FGDK---------------D-----KDRVLQKS 305 (566)
T ss_pred HHHHHHHCCCEEEc-CCEEEEccc-----------------------ccCC---------------C-----CCeEEEEC
Confidence 99999999999977 777764310 0100 0 11233343
Q ss_pred ecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhh
Q 003611 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (807)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yi 286 (807)
...+-.-... +..+..+ + .| | .+++||||-..+.+|+
T Consensus 306 DGt~~Y~t~D----iA~~~~k-----------------~----------~~----~--------~d~iI~V~g~~q~~h~ 342 (566)
T TIGR00456 306 DGTYLYLTRD----IAYHLDK-----------------L----------ER----G--------FDKMIYVWGSDHHLHI 342 (566)
T ss_pred CCCceechhh----HHHHHHH-----------------H----------hc----C--------CCEEEEEecCcHHHHH
Confidence 3333211111 1111110 0 00 0 2566666655444443
Q ss_pred hcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceeecCCCccccccCCccChh-
Q 003611 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGN- 365 (807)
Q Consensus 287 s~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~- 365 (807)
.. ++ +.|+++|++ +|.++.+|+|.+++|.|||||+||+|++.
T Consensus 343 ~~---------------------------------v~--~~l~~lG~~--~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~d 385 (566)
T TIGR00456 343 AQ---------------------------------FF--AILEKLGFY--KKKELIHLNFGMVPLGSMKTRRGNVISLDN 385 (566)
T ss_pred HH---------------------------------HH--HHHHHcCCC--CCCceEEEEEEEEECCCCCccCCceeeHHH
Confidence 32 22 678888864 68899999999999999999999999998
Q ss_pred ----------------------hhhhcCCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhC
Q 003611 366 ----------------------DAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAK 423 (807)
Q Consensus 366 ----------------------d~l~~~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k 423 (807)
++++ .+|.|++|||+++.. ..+|.+|+++.+.+ .|++++++++|+++|+++++++
T Consensus 386 ll~~~~~ra~~~i~~~~~~~~~~~~~-~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~-~~~n~~~yiqYa~aR~~SIlrK 462 (566)
T TIGR00456 386 LLDEASKRAGNVITIKNDLEEEDVAD-AVGIGAVRYFDLSQN-RETHYVFDWDAMLS-FEGNTAPYIQYAHARICSILRK 462 (566)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHH-HhcccceeeHHhhcC-CCCCceecHHHHhc-cCCCCchhHHHHHHHHHHHHHh
Confidence 5665 588999999999977 48999999998877 4899999999999999999998
Q ss_pred CCCCCCCCcCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhhccCChHH
Q 003611 424 PPGQGYGSIVPDAN--GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPS 501 (807)
Q Consensus 424 ~~~~~~~g~ip~~~--~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~ 501 (807)
. ..+.++... ....++.+..|+..+..+.+.+.+++++++++.+++.++++++.+|+|++.+ |.+..++++.
T Consensus 463 ~----~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~~~--~Vl~~~~~~~ 536 (566)
T TIGR00456 463 A----DIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYKAC--PVLDAENENL 536 (566)
T ss_pred c----ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcC--ccCCCCCHHH
Confidence 3 212121110 0112455778999999999999999999999999999999999999999977 5555444433
Q ss_pred HHHHH
Q 003611 502 CSIVM 506 (807)
Q Consensus 502 ~~~~l 506 (807)
..+-|
T Consensus 537 ~~~RL 541 (566)
T TIGR00456 537 AAARL 541 (566)
T ss_pred HHHHH
Confidence 33333
No 63
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=1.6e-31 Score=305.48 Aligned_cols=269 Identities=19% Similarity=0.257 Sum_probs=188.1
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhH--------HH-HHHHHHcCCC------
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--------AT-ETKAMEDNCS------ 86 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~--------~i-~~~A~~~g~~------ 86 (807)
..++|+||+ ||||.|||||+++ ++.+|+++|++|++|++|.|++|+|+||. |. +..++..|++
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e-~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFRE-VARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccc-hhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 348888887 7999999999997 68899999999999999999999999973 32 2344555554
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCccccccccccc
Q 003611 87 ----PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGT 162 (807)
Q Consensus 87 ----p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~ 162 (807)
+++|+++|.+.|++.|+.|||++|.+.+|....+..+.+.+...|.+++.|..--.+.-=....++|+|
T Consensus 101 p~G~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P------- 173 (510)
T PRK00750 101 PFGCHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSP------- 173 (510)
T ss_pred CCCCchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeee-------
Confidence 899999999999999999999999665555555557888888888888888633222111223344433
Q ss_pred CCCCCCCCCCCCCcchhccCCCCCcc----cc----CCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCCC
Q 003611 163 CPFEGCNYESARGDQCENCGKLLNAT----DL----KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSW 234 (807)
Q Consensus 163 cp~~~c~~~~~~g~~ce~cG~~l~~~----el----~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~ 234 (807)
+-..|++||+.+... +. +...| .||+..+..-++.
T Consensus 174 -----------~~pic~~cg~~~~~~~~~~d~~~~~v~y~~-~cG~~~~~~~~~g------------------------- 216 (510)
T PRK00750 174 -----------FLPICPKCGKVLTTPVISYDAEAGTVTYDC-ECGHEGEVPVTGG------------------------- 216 (510)
T ss_pred -----------eeeeCCCCCccceEEEEEEeCCCCEEEEEc-CCCCEEEEecCCC-------------------------
Confidence 345688888875422 11 11233 3666544311110
Q ss_pred ChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEEe
Q 003611 235 SQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGK 314 (807)
Q Consensus 235 ~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGk 314 (807)
+| .+.|-+..|. .| +.-..| +-..|+
T Consensus 217 -------------~~--------KL~Wr~dW~~---------------------------rW---~~l~Vd---~e~~Gk 242 (510)
T PRK00750 217 -------------HG--------KLQWKVDWPM---------------------------RW---AALGVD---FEPFGK 242 (510)
T ss_pred -------------Cc--------ccCCCCCcHH---------------------------HH---HHcCCC---EEeeCc
Confidence 00 2234333331 11 111344 678999
Q ss_pred cccc-chhchHHHHhh-hCCCCcccCeEEEeeceeecC-CCccccccCCccChhhhhhcCCCchhHHHHHHhcCCCCCCc
Q 003611 315 DNVP-FHTVMFPSTLL-GTGENWTLMKTISVTEYLNYE-SGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDT 391 (807)
Q Consensus 315 Dii~-fH~i~~pa~l~-a~~~~~~~p~~i~~hg~l~~~-G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~~~D~ 391 (807)
|+.. .+.. .-.++. .+|.+ +|.. ++|||++.+ |+|||||+||+|++.|+++ .+++|++|||++...+..+|+
T Consensus 243 Dh~~~s~~~-~~~i~~~ilg~~--~P~~-~~y~~v~~~~G~KMSKSkGN~i~~~d~l~-~~~pd~lR~~l~~~~~~~~~~ 317 (510)
T PRK00750 243 DHASASYDT-SKKIAREILGGE--PPEP-FVYELFLDKKGEKISKSKGNVITIEDWLE-YAPPESLRLFMFARPKPAKRL 317 (510)
T ss_pred ccCcchHHH-HHHHHHHHcCCC--CCee-eeeeeEEeCCCCcccccCCCccCHHHHHH-HCCHHHHHHHHHhCCCCCCCC
Confidence 9987 3332 223343 55653 5655 779999987 9999999999999999999 699999999998777888999
Q ss_pred cccH
Q 003611 392 LFTW 395 (807)
Q Consensus 392 ~Fs~ 395 (807)
+|++
T Consensus 318 ~f~~ 321 (510)
T PRK00750 318 DFDV 321 (510)
T ss_pred cccH
Confidence 9998
No 64
>TIGR02222 chap_CsaA export-related chaperone CsaA. This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.
Probab=99.94 E-value=1.4e-27 Score=215.60 Aligned_cols=103 Identities=25% Similarity=0.464 Sum_probs=96.5
Q ss_pred CceeeeEEEEEEEEEEeCCCCCc-eEEEEEEcCCC-ccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEe
Q 003611 645 SIARLDIRVGKITKVQKHPDADA-LYVEEIDVGEV-QPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVL 722 (807)
Q Consensus 645 ~~~~~~~~vg~i~~~~~hp~adk-l~~~~vd~G~~-~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll 722 (807)
+|.++|+|||+|+++++||+++| ||+++||+|.+ +.|||+||++.+|++++|+|++|++++||||+||||++||||||
T Consensus 3 ~f~kldlrvg~I~~~~~~p~a~k~L~~l~vd~G~~~~~r~ivsgi~~~~~~e~L~gk~v~~v~Nl~p~k~~G~~S~gMil 82 (107)
T TIGR02222 3 DFEKLDLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVVNFPPKQIAGFLSEVLVL 82 (107)
T ss_pred hhhhhhheeEEEEEEeecCCcccceeEEEEEecCcCCcceEehhhhhhCCHHHhCCCeEEEEECCCCceeCCccccEEEE
Confidence 58899999999999999999998 99999999964 46999999999999999999999999999999999999999999
Q ss_pred eeecCCCCeEEEEcCCCCCCCCceee
Q 003611 723 CASTSDNTKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 723 ~~~~~~~~~~~ll~~~~~~~~G~~v~ 748 (807)
|++++++ .+.++.|+.++++|++|+
T Consensus 83 ~~~~~~~-~~~l~~~~~~~~~G~~v~ 107 (107)
T TIGR02222 83 GVIDEQG-RVVLLQPDRPVPNGTKIA 107 (107)
T ss_pred EEECCCC-eEEEecCCCCCCCcCCcC
Confidence 9987553 699999999999999984
No 65
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins. CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.
Probab=99.94 E-value=2.9e-27 Score=214.10 Aligned_cols=102 Identities=28% Similarity=0.493 Sum_probs=96.7
Q ss_pred CceeeeEEEEEEEEEEeCCCC-CceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEee
Q 003611 645 SIARLDIRVGKITKVQKHPDA-DALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLC 723 (807)
Q Consensus 645 ~~~~~~~~vg~i~~~~~hp~a-dkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~ 723 (807)
+|.++|+|||+|+++++||++ ++||+++||+|.+++|||+||++++|++++|+|++|++++||||+||||++|+|||||
T Consensus 5 ~f~kldi~vG~V~~~~~~p~a~~kL~~~~Vd~G~~~~r~ivsg~~~~~~~e~l~gk~v~~v~Nlkp~k~~G~~S~gm~l~ 84 (107)
T cd02798 5 DFEKVDLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNFPPKQIAGVLSEVLVLG 84 (107)
T ss_pred HceeeeeEEEEEEEEEECCCcccceEEEEEEecCccceehhhhhhhcCCHHHhcCCcEEEEeCCCCceecceeccEEEEE
Confidence 588999999999999999999 9999999999986789999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEcCCCCCCCCcee
Q 003611 724 ASTSDNTKVELVEPPKSAKIGERV 747 (807)
Q Consensus 724 ~~~~~~~~~~ll~~~~~~~~G~~v 747 (807)
+++++ +.++++.||.++++|+||
T Consensus 85 ~~~~~-~~~~~~~~~~~~~~G~~i 107 (107)
T cd02798 85 ADDEG-GEVVLLVPDREVPNGAKV 107 (107)
T ss_pred EEcCC-CcEEEecCCCCCCCcCCC
Confidence 98764 378999999999999986
No 66
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.94 E-value=8.4e-27 Score=264.42 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=172.4
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchh------------------hHHHHHHHHHc
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY------------------GTATETKAMED 83 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~h------------------G~~i~~~A~~~ 83 (807)
.+++|+||++ |||.|||||+++ ++.+|+++|++|++|++|.|++|+|+| |.|+...+...
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e-~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFRE-VITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCCccccchhh-hhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 4799999987 999999999998 689999999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcccccccCCCCh----hHHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccc
Q 003611 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP----QQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (807)
Q Consensus 84 g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~----~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v 159 (807)
|++ ..|+++|...|.+.|+.|||+++.. ++++- .|.+.+..+.++-.+=..|...... -+..++|+|
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e~~-s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~---~~~~~~~~P---- 166 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPEFI-RASKQYTSGLYASQIKIALDHRKEISEILNEYRT---SKLEENWYP---- 166 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEEEE-EHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcC---CccCCCcee----
Confidence 997 9999999999999999999999744 44332 2222222222211111111100000 012233333
Q ss_pred cccCCCCCCCCCCCCCcchhccCCCCCccc------cCCCccccCCCceEEeeecceeEeccchHHHHHHHHHcCCCCCC
Q 003611 160 EGTCPFEGCNYESARGDQCENCGKLLNATD------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGS 233 (807)
Q Consensus 160 ~g~cp~~~c~~~~~~g~~ce~cG~~l~~~e------l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~ 233 (807)
+-..|++||+.+.+.. -+...| .||+..+..-+..-
T Consensus 167 --------------~~pic~~cGrv~~~~~~~~~~~~v~Y~c-~cG~~g~~~~~~g~----------------------- 208 (515)
T TIGR00467 167 --------------ISVFCENCGRDTTTVNNYDNEYSIEYSC-ECGNQESVDIYTGA----------------------- 208 (515)
T ss_pred --------------eeeecCCcCccCceEEEecCCceEEEEc-CCCCEEEEeecCCC-----------------------
Confidence 3456788888754211 122345 37765543211100
Q ss_pred CChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhcCCCCCcceEEEEE
Q 003611 234 WSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMG 313 (807)
Q Consensus 234 ~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iG 313 (807)
| .+.|-+..|.- | +.-..| +--.|
T Consensus 209 ---------------~--------KL~WkvdW~~R---------------------------W---~~lgV~---~Ep~G 232 (515)
T TIGR00467 209 ---------------I--------KLPWRVDWPAR---------------------------W---KIEKVT---FEPAG 232 (515)
T ss_pred ---------------c--------ccCCCCCcHhh---------------------------H---hhhCcc---cccCC
Confidence 0 12333333311 1 100233 34478
Q ss_pred ecccc----chhchHHHHhhhCCCCcccCeEEEeeceee--cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCC
Q 003611 314 KDNVP----FHTVMFPSTLLGTGENWTLMKTISVTEYLN--YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE 387 (807)
Q Consensus 314 kDii~----fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~--~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~ 387 (807)
|||.- +-.....|. .++|. .+|.. +..+|+. .+|+|||||+||+|++.|+++ .+++|++||++++ ..+
T Consensus 233 kDH~~~ggsy~~~~~ia~-~~l~~--~~P~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~-~~~pdalR~~~l~-~~~ 306 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAK-EIFQY--SPPVT-VQYEWISLKGKGGKMSSSKGDVISVKDVLE-VYTPEITRFLFAR-TKP 306 (515)
T ss_pred CCccCccCCchhHHHHHH-HHhCC--CCCcC-cEEEEEEEcCCCccccCCCCCCccHHHHHH-HcCHHHHHHHHhc-cCC
Confidence 88753 222222232 45543 24543 3366653 467799999999999999999 6999999999887 666
Q ss_pred CCCccccHHHH
Q 003611 388 VSDTLFTWADL 398 (807)
Q Consensus 388 ~~D~~Fs~~~l 398 (807)
.++++|+++.+
T Consensus 307 ~~~ldFd~~~l 317 (515)
T TIGR00467 307 EFHISFDLDVI 317 (515)
T ss_pred CCCCcCCHHHH
Confidence 99999999977
No 67
>PRK10089 tRNA-binding protein; Provisional
Probab=99.94 E-value=8.6e-27 Score=212.58 Aligned_cols=103 Identities=27% Similarity=0.443 Sum_probs=97.4
Q ss_pred CceeeeEEEEEEEEEEeCCCCCce-EEEEEEcCCC-ccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEe
Q 003611 645 SIARLDIRVGKITKVQKHPDADAL-YVEEIDVGEV-QPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVL 722 (807)
Q Consensus 645 ~~~~~~~~vg~i~~~~~hp~adkl-~~~~vd~G~~-~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll 722 (807)
+|.++|+|||+|+++++||++++| |+++||+|.+ +.|||+||++.+|++++|+|++|++++||||++|||++||||||
T Consensus 8 ~f~kldlrvg~I~~~~~~p~a~kL~~~l~vd~G~~~~~r~i~sgl~~~~~~eel~gk~v~~v~Nlkp~~~~G~~S~gmil 87 (112)
T PRK10089 8 DFEKVDIRVGTIVEAEPFPEARKPAYKLWIDFGEEIGVKQSSAQITPHYTPEELIGKQVVAVVNFPPKQIAGFMSEVLVL 87 (112)
T ss_pred HhhhhheeeEEEEEEEEcCCcCcceEEEEEEecCccCcceEehhhcccCCHHHHccCcEEEEECCCcceecCccccEEEE
Confidence 688999999999999999999999 9999999975 48999999999999999999999999999999999999999999
Q ss_pred eeecCCCCeEEEEcCCCCCCCCceee
Q 003611 723 CASTSDNTKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 723 ~~~~~~~~~~~ll~~~~~~~~G~~v~ 748 (807)
|++++++ .++++.|+.++++|+||.
T Consensus 88 ~~~~~~~-~~~l~~p~~~~~~G~~i~ 112 (112)
T PRK10089 88 GFEDEDG-EVVLLTPDRPVPNGVKLV 112 (112)
T ss_pred EEEcCCC-eEEEecCCCCCCCcCCcC
Confidence 9987665 689999999999999974
No 68
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=2.3e-23 Score=242.12 Aligned_cols=336 Identities=13% Similarity=0.107 Sum_probs=229.5
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH---cCC------------
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME---DNC------------ 85 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~---~g~------------ 85 (807)
++++.|--.=|.|+|++|+||+|++ +.+|+++|.++..||+|.-..-+.|.|..+-..+.. .|.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~a-iiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 190 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRST-MIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL 190 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhH-HHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHH
Confidence 4678887788999999999999996 559999999999999997776666666543322210 000
Q ss_pred -------------------------------C------HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHH
Q 003611 86 -------------------------------S------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIF 128 (807)
Q Consensus 86 -------------------------------~------p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f 128 (807)
+ .+.+++...+.|++++++|||.||.|.. +..|...+..+.
T Consensus 191 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~--es~~~~~~~~v~ 268 (562)
T PRK12451 191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQG--EAFYNDLMEDFI 268 (562)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecc--hHhhhhhHHHHH
Confidence 1 2334566678999999999999995543 235667789999
Q ss_pred HHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeec
Q 003611 129 KKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208 (807)
Q Consensus 129 ~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~ 208 (807)
++|.++|++|+.++..|.+.+. +|+ ...+..++..
T Consensus 269 ~~L~~~g~~~e~dGa~~~~~~~-----------------------~g~----------------------~~~vl~ksDG 303 (562)
T PRK12451 269 GILEEHDLLEESEGALVVNLEE-----------------------EGM----------------------PPCLIRKSDG 303 (562)
T ss_pred HHHHHCCCEEecCCeEEEEecc-----------------------cCC----------------------CceEEEeCCC
Confidence 9999999999988877754210 000 1123333333
Q ss_pred ceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhc
Q 003611 209 HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSI 288 (807)
Q Consensus 209 ~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~ 288 (807)
.+-.-..+ +..++.+ + . | +| .+++||||-....+|+..
T Consensus 304 t~~Y~t~D----iA~~~~k-----------------~-~---------~---~~--------~d~~IyV~g~dq~~h~~~ 341 (562)
T PRK12451 304 ATIYATRD----LTAALYR-----------------Q-N---------T---FG--------FDKALYVVGPEQSLHFNQ 341 (562)
T ss_pred ccccchhH----HHHHHHH-----------------h-h---------c---cC--------CCEEEEEeCCcHHHHHHH
Confidence 32211111 1111100 0 0 0 11 256666665444444322
Q ss_pred ccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCeE--EEeeceeecCCCccccccCCccChhh
Q 003611 289 TSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKT--ISVTEYLNYESGKFSKSKGIGVFGND 366 (807)
Q Consensus 289 ~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~--i~~hg~l~~~G~KMSKS~GN~I~~~d 366 (807)
++ +.+.++|.. .+.. ++..|+++.+|+||||.+||+|+.+|
T Consensus 342 ---------------------------------l~--~~~~~lg~~--~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~d 384 (562)
T PRK12451 342 ---------------------------------FF--TVLKKLGYT--WVDGMEHVPFGLILKDGKKMSTRKGRVVLLEE 384 (562)
T ss_pred ---------------------------------HH--HHHHHcCCC--cccCeEEEeeeeEecCCCCCcCCCCCeeEHHH
Confidence 11 455566643 2333 35567788899999999999999999
Q ss_pred hhhc------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHh
Q 003611 367 AKDT------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIA 422 (807)
Q Consensus 367 ~l~~------------------------~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~ 422 (807)
+++. ..+.+++||++++..+ .++.+|+|+.+... +.+-.-.+.+.+.|++++++
T Consensus 385 Lldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~-~g~t~pYiQYa~AR~~SIlr 462 (562)
T PRK12451 385 VLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNER-MHNIEFSLENMLKF-EGETGPYVQYTHARACSILR 462 (562)
T ss_pred HHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCC-CCCceECHHHHhCc-CCCccHHHHHHHHHHHHHHH
Confidence 9983 2668999999999555 89999999996553 22223389999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003611 423 KPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (807)
Q Consensus 423 k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (807)
|.. .+ .........++.+..++..+..+.+.+.+++++++++.+++.++++++.+|+|++..+
T Consensus 463 ka~---~~--~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy~~~~ 525 (562)
T PRK12451 463 KES---VE--FETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYYGNVR 525 (562)
T ss_pred hcC---CC--ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 831 11 1100001124567889999999999999999999999999999999999999998765
No 69
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.
Probab=99.93 E-value=2.2e-25 Score=202.08 Aligned_cols=105 Identities=70% Similarity=1.124 Sum_probs=98.2
Q ss_pred CCceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEee
Q 003611 644 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLC 723 (807)
Q Consensus 644 ~~~~~~~~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~ 723 (807)
++|.++|+|||+|+++++||++++|++++||+|.++++||+||+++++++++++|++|++++||+|++|+|+.|||||||
T Consensus 1 ~~f~~~~i~vg~I~~~~~~p~s~kL~~l~Vd~G~~~~~~Ivsg~~~~~~~~~~~g~~v~~l~nl~~~~~~G~~S~GMll~ 80 (105)
T cd02799 1 VDPSRLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLCNLKPRKMRGVKSQGMVLC 80 (105)
T ss_pred CCceEEEEEEEEEEEEEecCCCCccEEEEEEeCCCcEEEEEcCccccCCHHHhCCCEEEEEEeeccceECCeeeceEEEE
Confidence 36899999999999999999999999999999976789999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEcCCCCCCCCceee
Q 003611 724 ASTSDNTKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 724 ~~~~~~~~~~ll~~~~~~~~G~~v~ 748 (807)
+++.++..+.+++||.++++|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~G~~i~ 105 (105)
T cd02799 81 ASNADHEKVELLEPPEGAKPGERVT 105 (105)
T ss_pred eccCCCCcEEEEECCCCCCCCCEeC
Confidence 9876544689999999999999983
No 70
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.91 E-value=6.9e-24 Score=217.58 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=112.3
Q ss_pred EEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003611 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (807)
Q Consensus 24 ~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (807)
+.|--..|+|||++||||+|++ +.+|+++||+|+.|++|.+++++||||++|+..|.+.+. ++++++.+.+.|+++++
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~-vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNA-IIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETYG 79 (212)
T ss_pred eEEEecCCCCCCCccccccHHH-HHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4555677999999999999985 679999999999999999999999999999999977644 89999999999999999
Q ss_pred hcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeeecCCC
Q 003611 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150 (807)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~ 150 (807)
+|||++|.|.++++. ...++++++.|.++|++|+..+.+|||+.+
T Consensus 80 ~L~i~~d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 80 RLDVRFDVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HhCCcCceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 999999999999854 889999999999999999999988888653
No 71
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.
Probab=99.91 E-value=1.6e-24 Score=204.06 Aligned_cols=102 Identities=34% Similarity=0.567 Sum_probs=96.8
Q ss_pred CceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeee
Q 003611 645 SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCA 724 (807)
Q Consensus 645 ~~~~~~~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~ 724 (807)
+|.++|+|||+|+++++||++++||+++||+|.+ .||||||+..+|.+++++|++|++++||+|++|||+.|+|||||+
T Consensus 36 ~f~kldi~Vg~I~eve~hp~adkL~v~~Vd~G~~-~~qIvsg~~~~~~~~~l~G~~v~~~~nlkp~k~~Gv~S~GMlls~ 114 (137)
T TIGR00399 36 DFEKVDLRVGKILKAERVEKSDKLLKLKLDLGDE-KRQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGMILAA 114 (137)
T ss_pred hceeeeeEEEEEEEEeecCCCCcceEEEEEeCCc-eEEEEeCcccCcCHhHcCCCEEEeeEEecCccCCCeEeccEEEEE
Confidence 7999999999999999999999999999999974 699999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEcCCCCCCCCceee
Q 003611 725 STSDNTKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 725 ~~~~~~~~~ll~~~~~~~~G~~v~ 748 (807)
.++++ .++|+.||.++++|++|.
T Consensus 115 ~~~~~-~~~l~~~~~~~~~G~~i~ 137 (137)
T TIGR00399 115 EDDGK-VLFLLSPDQEAIAGERIK 137 (137)
T ss_pred ecCCC-eEEEecCCCCCCCcCCcC
Confidence 87665 789999999999999973
No 72
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....
Probab=99.91 E-value=2e-24 Score=191.95 Aligned_cols=95 Identities=42% Similarity=0.647 Sum_probs=87.7
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeeeecCCCC
Q 003611 651 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNT 730 (807)
Q Consensus 651 ~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~~~~~~~ 730 (807)
||||+|+++++||++||||+++||+|+++ ||||||+++++++++|+|+.+++++|++|++|+|+.|||||||+++.+..
T Consensus 1 i~vg~I~~~~~hp~sdkL~~~~Vd~G~~~-~~Ivsg~~n~~~~~~lv~~~~~~v~n~~~~~i~Gv~SeGMlls~~e~~~~ 79 (95)
T PF01588_consen 1 IRVGKILEVEPHPNSDKLYVLKVDIGEEE-RQIVSGAKNVYEPEVLVGKKVVVVANLKPRKIRGVESEGMLLSASELGDG 79 (95)
T ss_dssp EEEEEEEEEEEETTSSSEEEEEEESSSSE-EEEEESCTTTSTHHHHTTTEEEEETTSCBEEETTEEEESEE-EEECSTSS
T ss_pred CEEEEEEEEEECCCCCEEEEEEEEeCCce-EEEEeccccccChhhhcceeEEEEEccCCcEEEeccCCEEEEEeeccCCC
Confidence 79999999999999999999999999876 99999999999999999999999999999999999999999999973345
Q ss_pred eEEEEcCCCCCCCCce
Q 003611 731 KVELVEPPKSAKIGER 746 (807)
Q Consensus 731 ~~~ll~~~~~~~~G~~ 746 (807)
...++.+|+++|+|++
T Consensus 80 ~~~ll~~~~~~~~G~~ 95 (95)
T PF01588_consen 80 SVGLLVLPDDAPPGED 95 (95)
T ss_dssp EEEEEEESSTS-TTSB
T ss_pred CEEEEECCCCCCCCCC
Confidence 7889999999999986
No 73
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.3e-22 Score=230.48 Aligned_cols=341 Identities=16% Similarity=0.179 Sum_probs=227.7
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHH--------------------
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA-------------------- 80 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A-------------------- 80 (807)
.+++.|--.=|.|+|++||||+|++ |.+|+++|.++..||+|.-..-+.|.|.-|-.-+
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~a-iiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~ 194 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNA-IIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGY 194 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhh-HHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchH
Confidence 3567776677899999999999996 5599999999999999976666666655332111
Q ss_pred ------------HH-cCC---------------CH-----HHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHH
Q 003611 81 ------------ME-DNC---------------SP-----KEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAI 127 (807)
Q Consensus 81 ------------~~-~g~---------------~p-----~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~ 127 (807)
++ .+. .+ +.+++.....|++++++|||.+|.|...++-.+...+..+
T Consensus 195 lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~~~v 274 (577)
T COG0018 195 LGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKVEKV 274 (577)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccHHHH
Confidence 01 110 00 1267778889999999999999999877777777789999
Q ss_pred HHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeee
Q 003611 128 FKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDT 207 (807)
Q Consensus 128 f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~ 207 (807)
...|.++|++|+..+...-+- ..|- .+|+. ...+..++.
T Consensus 275 v~~L~~~~~~~e~~GA~~vdl--~~~~------------------~~gd~---------------------~~~vl~KSD 313 (577)
T COG0018 275 VEDLEEKGLLYEDDGALVVDL--LKFK------------------KFGDD---------------------KDRVLQKSD 313 (577)
T ss_pred HHHHHhcCCEeeeCCeEEEeh--hhhh------------------hcCCC---------------------CCeEEEEcC
Confidence 999999999998544431111 0000 00100 112222222
Q ss_pred cceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhh
Q 003611 208 NHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVS 287 (807)
Q Consensus 208 ~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis 287 (807)
..+-.-.. .+..++.+ .. +| -+++|||
T Consensus 314 Gt~lY~t~----DIAy~~~K------------------~~-------------~~--------~d~~IyV---------- 340 (577)
T COG0018 314 GTYLYFTR----DIAYHLYK------------------FE-------------RG--------FDKLIYV---------- 340 (577)
T ss_pred CCeeeehh----HHHHHHHH------------------Hh-------------cC--------CCEEEEE----------
Confidence 22211111 11111100 00 00 1344444
Q ss_pred cccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCe-EEEeece--eec-CCCccccccCCccC
Q 003611 288 ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMK-TISVTEY--LNY-ESGKFSKSKGIGVF 363 (807)
Q Consensus 288 ~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~-~i~~hg~--l~~-~G~KMSKS~GN~I~ 363 (807)
+|.|+.-+-..+| +.+..+|+. +++ .+.+++| +.. +|.||||..|++|+
T Consensus 341 ------------------------~gadq~~~~~ql~-~~l~~~g~~--~~~~~~~h~~~~l~~~~~g~kmStR~G~~vt 393 (577)
T COG0018 341 ------------------------LGADQHGHFKQLK-AVLELLGYG--PDKEVLLHQGVGLVRGGEGVKMSTRAGNVVT 393 (577)
T ss_pred ------------------------eCCcchhHHHHHH-HHHHHhcCC--CccceEEEEEEeeeECCCCccccccCCceEE
Confidence 4444421111122 344555654 343 3444444 222 67899999999999
Q ss_pred hhhhhhcCCC----------------------chhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhH
Q 003611 364 GNDAKDTNIP----------------------VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421 (807)
Q Consensus 364 ~~d~l~~~~~----------------------~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~ 421 (807)
.+|+++ ..+ .|++||++++.++ .++++|+|+.+.+.- ++-+-.+++...|+++++
T Consensus 394 l~dlld-e~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfe-gNt~pYvQYA~ARi~SIl 470 (577)
T COG0018 394 LDDLLD-EAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFE-GNTAPYVQYAHARICSIL 470 (577)
T ss_pred HHHHHH-HHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhcc-CCCchhHHHHHHHHHHHH
Confidence 999998 466 8999999999655 899999999998854 488999999999999999
Q ss_pred hCCCCCCCCCcCCCCC---CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003611 422 AKPPGQGYGSIVPDAN---GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (807)
Q Consensus 422 ~k~~~~~~~g~ip~~~---~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (807)
+|..+. ..+... .....+.+..|+..+..+...+.++.++++++..+.++.+|+..+|+|++.++
T Consensus 471 rka~e~----~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~~ 538 (577)
T COG0018 471 RKAGED----ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNACP 538 (577)
T ss_pred Hhcccc----ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhCC
Confidence 984321 111110 01122336889999999999999999999999999999999999999999865
No 74
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.
Probab=99.91 E-value=2.3e-24 Score=195.49 Aligned_cols=101 Identities=37% Similarity=0.662 Sum_probs=95.8
Q ss_pred CceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeee
Q 003611 645 SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCA 724 (807)
Q Consensus 645 ~~~~~~~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~ 724 (807)
+|.++|+|||+|+++++||++++||+++||+|. +++||+||++++|.+++++|++|++++||+|++|||+.|+|||||+
T Consensus 5 ~~~~ldi~vg~I~~~~~~p~a~kL~~~~vd~G~-~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~GMl~s~ 83 (105)
T cd02800 5 DFAKVDLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKFYPPEELVGKKVVVVANLKPRKLRGVESQGMILAA 83 (105)
T ss_pred HceeeeEEEEEEEEEEecCCCCcceEEEEEeCC-eEEEEEeCcccccCHhHhccCceEeEeeECCccCCCeEeceEEEEe
Confidence 478999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEcCCCCCCCCceee
Q 003611 725 STSDNTKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 725 ~~~~~~~~~ll~~~~~~~~G~~v~ 748 (807)
.++ ..++|+.||.++++|+||.
T Consensus 84 ~~~--~~~~l~~~~~~~~~G~~i~ 105 (105)
T cd02800 84 EDG--GKLKLLTPDEEVEPGSRVS 105 (105)
T ss_pred cCC--CeEEEEeCCCCCCCcCCcC
Confidence 866 4789999999999999973
No 75
>COG0073 ARC1 EMAP domain [General function prediction only]
Probab=99.91 E-value=2.8e-24 Score=199.48 Aligned_cols=103 Identities=32% Similarity=0.566 Sum_probs=95.1
Q ss_pred CceeeeEEEEEEEEEEeCCCCCceEEEEEEcCCC-ccEEEEeCCCCCCCchhcCCCEEEEeee---ccccccccccceeE
Q 003611 645 SIARLDIRVGKITKVQKHPDADALYVEEIDVGEV-QPRTVVSGLVKHIPLEEMQERMVCVLCN---LKPVAMRGIKSHAM 720 (807)
Q Consensus 645 ~~~~~~~~vg~i~~~~~hp~adkl~~~~vd~G~~-~~~~ivsg~~~~~~~~~l~g~~v~~~~n---lk~~k~~G~~S~gM 720 (807)
+|.+++||||+|+++++||+||||++|+||+|++ ++||||||++++|+++.++|+++.+++| |||+||||+.|+||
T Consensus 15 ~~~~~~l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~~~~ikp~klrG~~S~GM 94 (123)
T COG0073 15 DFAKVDLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNGGKLKPAKLRGVESEGM 94 (123)
T ss_pred ccccCCeEEEEEEEeEECCCCCeeEEEEEEcCCCCcEEEEEcCCccccCCceeeeeeEEEEeCCCcccceeecCcccceE
Confidence 7899999999999999999999999999999975 4899999999999999999999999999 99999999999999
Q ss_pred EeeeecCCCC--eEEEEcCCCCCCCCcee
Q 003611 721 VLCASTSDNT--KVELVEPPKSAKIGERV 747 (807)
Q Consensus 721 ll~~~~~~~~--~~~ll~~~~~~~~G~~v 747 (807)
|||+.+.+.. ...|+.+|.++++|+++
T Consensus 95 ics~~e~~~~~~~~~il~~~~~~~~g~~~ 123 (123)
T COG0073 95 LLSAEELGLSDENVGILTLDEGVPPGTKV 123 (123)
T ss_pred EEEcccCCCccccceEEeCCCCCCCCCCC
Confidence 9999875432 46799999999999864
No 76
>PLN02286 arginine-tRNA ligase
Probab=99.89 E-value=5.4e-21 Score=222.40 Aligned_cols=339 Identities=12% Similarity=0.086 Sum_probs=228.6
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHc----C-------C---
Q 003611 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED----N-------C--- 85 (807)
Q Consensus 20 ~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~----g-------~--- 85 (807)
+++++.|--.=|.|+|++||||+|++ +.+|+++|.++..||+|.-..-+.|.|..+-.-+... + .
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsa-iiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~ 193 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRST-IIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIG 193 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccch-hhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHH
Confidence 34678887788999999999999996 5599999999999999977776766666443222110 0 0
Q ss_pred ---------------C------------------------HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHH
Q 003611 86 ---------------S------------------------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQA 126 (807)
Q Consensus 86 ---------------~------------------------p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~ 126 (807)
+ .+.+++.....|++.+++|||.+|.+ .+..|...+..
T Consensus 194 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~---ges~y~~~~~~ 270 (576)
T PLN02286 194 DLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEK---GESFYNPYIPG 270 (576)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeec---CchhhhhhHHH
Confidence 0 11344556678999999999999973 33356677799
Q ss_pred HHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEee
Q 003611 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (807)
Q Consensus 127 ~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~ 206 (807)
+++.|.++|++|+..+..|.+- .+. + ...+..++
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~l------~~~-----------------~-----------------------~~~vl~ks 304 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIFV------EGF-----------------D-----------------------IPLIVVKS 304 (576)
T ss_pred HHHHHHHCCCEEeeCCceEeec------cCC-----------------C-----------------------CceEEEEC
Confidence 9999999999998877766421 100 0 01123333
Q ss_pred ecceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhh
Q 003611 207 TNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYV 286 (807)
Q Consensus 207 ~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yi 286 (807)
...+- .+...|..++.+ + .. || .++.||||-....+|+
T Consensus 305 DGt~t----Y~t~DIA~~~~k-----------------~-~~------------~~--------~d~~IyVvg~~q~~hf 342 (576)
T PLN02286 305 DGGFN----YASTDLAALWYR-----------------L-NE------------EK--------AEWIIYVTDVGQQQHF 342 (576)
T ss_pred CCchh----hHHHHHHHHHHH-----------------H-hc------------cC--------CCEEEEEEeCcHHHHH
Confidence 33221 111222221111 0 00 11 2567777755444444
Q ss_pred hcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcc-cC--eEEEeeceee-cCCCccccccCCcc
Q 003611 287 SITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT-LM--KTISVTEYLN-YESGKFSKSKGIGV 362 (807)
Q Consensus 287 s~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~-~p--~~i~~hg~l~-~~G~KMSKS~GN~I 362 (807)
... + +.+.++|..+. +. -.++..|+++ .+|+||||.+||+|
T Consensus 343 ~~v---------------------------------~--~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v 387 (576)
T PLN02286 343 DMV---------------------------------F--KAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVV 387 (576)
T ss_pred HHH---------------------------------H--HHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCee
Confidence 321 1 45566664211 01 2346678886 78899999999999
Q ss_pred Chhhhhhc----------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHH
Q 003611 363 FGNDAKDT----------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (807)
Q Consensus 363 ~~~d~l~~----------------------------~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~ 414 (807)
+.+|++++ ..|.+++||++++..+ .++.+|+|+.+... +++-.-.+.+.+
T Consensus 388 ~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~-~g~t~pYlQYah 465 (576)
T PLN02286 388 RLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNR-LTNYTFSFDQMLDL-KGNTAVYLLYAH 465 (576)
T ss_pred EHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCC-CCCCccCHHHHHhh-cCCChHHHHHHH
Confidence 99999983 2468999999999555 89999999997653 333344899999
Q ss_pred HHHHHhHhCCCCCCCCCcCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 003611 415 NRVLSFIAKPPGQGYGSIVPD-ANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (807)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~ip~-~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~ 489 (807)
.|++++++|.... .. .... ......++.++.|+..+..+...+..+.++++++..+.++++|+...|+|++..
T Consensus 466 AR~~SIlrKa~~~-~~-~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~F~~fY~~~ 539 (576)
T PLN02286 466 ARICSIIRKSGKD-ID-ELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNC 539 (576)
T ss_pred HHHHHHHHhccCc-cc-cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcC
Confidence 9999999983210 00 0000 001122456788999999999999999999999999999999999999999866
No 77
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=99.87 E-value=3e-22 Score=179.93 Aligned_cols=97 Identities=42% Similarity=0.745 Sum_probs=89.4
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeeeecCC--
Q 003611 651 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSD-- 728 (807)
Q Consensus 651 ~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~~~~~-- 728 (807)
+|||+|+++++||++++|++++||+|.+..+||+||+.++|++++++|++|++++||+|++|+|+.|+|||||+++.+
T Consensus 1 ~~vg~I~~~~~~p~~~kL~~~~vd~G~~~~~~ivsg~~~~~~~~~~~g~~v~~~~~l~~~~~~g~~S~GMl~s~~~~g~~ 80 (99)
T cd02153 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPKKLRGVESEGMLLSAEELGLE 80 (99)
T ss_pred CEEEEEEEEEECCCCCCCEEEEEEeCCCcEEEEEeCCcccCChHHhCCCEEEEEEecccccCCCeecccEEeeccccCCC
Confidence 689999999999999999999999997678999999999999999999999999999999999999999999997742
Q ss_pred CCeEEEEcCCCCCCCCcee
Q 003611 729 NTKVELVEPPKSAKIGERV 747 (807)
Q Consensus 729 ~~~~~ll~~~~~~~~G~~v 747 (807)
.....|+.+|.++++|++|
T Consensus 81 ~~~~~i~~~~~~~~~G~~~ 99 (99)
T cd02153 81 EGSVGILELPEDAPVGDRI 99 (99)
T ss_pred CCceEEEECCCCCCCCCcC
Confidence 2356789999999999875
No 78
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.78 E-value=2.2e-18 Score=162.57 Aligned_cols=128 Identities=35% Similarity=0.595 Sum_probs=114.2
Q ss_pred HhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 003611 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481 (807)
Q Consensus 402 ~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~ 481 (807)
+|++|++++||+++|+.+++.+ .+++.+|... .....|+++++.++++.+++.++|++|++++|++.++++++.
T Consensus 1 ~n~~l~~~~gnll~r~~~~~~~----~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 74 (129)
T cd07957 1 INSELANNLGNLVNRTLNMASK----YFGGVVPEFG--GLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARA 74 (129)
T ss_pred CcHHHHhhHhhHHHHHHHHHHH----HcCCcCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4789999999999999999987 6777776532 123467899999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhccC-ChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHh
Q 003611 482 GNAYLQESQFWKLYKE-DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (807)
Q Consensus 482 ~N~yi~~~~pw~l~k~-~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (807)
+|+|++..+||.+.++ +.+++..+++++.++++.++++|+||||++|+++|++|
T Consensus 75 ~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 75 ANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 9999999999998865 55667889999999999999999999999999999975
No 79
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.77 E-value=4e-20 Score=197.99 Aligned_cols=263 Identities=20% Similarity=0.305 Sum_probs=124.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhH--HHHHH------HHHcCC------
Q 003611 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--ATETK------AMEDNC------ 85 (807)
Q Consensus 20 ~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~--~i~~~------A~~~g~------ 85 (807)
++..+.+-++ .+|+|.+||||++. ++.+|+++|.+|.+|++|.+++.+|+.+- +|-.. ++..|+
T Consensus 21 ~~~~~v~~sG-~sPSG~~HIGn~rE-v~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VP 98 (360)
T PF01921_consen 21 GKEPYVFASG-ISPSGLPHIGNFRE-VLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVP 98 (360)
T ss_dssp --SEEEEEEE-E--SS---HHHHHH-HHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB
T ss_pred CCccEEEecC-CCCCCCcccccccc-hhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCC
Confidence 3455666666 49999999999998 68899999999999999999999999852 22111 111122
Q ss_pred ----CHHHHHHHHHHHHHHHHhhcCcccccccCCC---ChhHH----------HHHHHHHHHHHhCCCeeeeeeeeeecC
Q 003611 86 ----SPKEICDKYHVIHKDVYKWFDISFDNFGRTS---TPQQT----------EACQAIFKKLLDNNWLIENTMQQPYCD 148 (807)
Q Consensus 86 ----~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~---~~~~~----------~~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (807)
....|+++|.+.|.+.|+.|||.++....|. +-.|. ..+.+++.......
T Consensus 99 dP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~------------- 165 (360)
T PF01921_consen 99 DPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE------------- 165 (360)
T ss_dssp -TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------------
T ss_pred CCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC-------------
Confidence 1356899999999999999999987443222 11222 33333333332211
Q ss_pred CCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCcc--------ccCCCccccCCCceEEeeecceeEeccchHHH
Q 003611 149 TCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNAT--------DLKDPKCKVCRNAPQIRDTNHLFLDLPALRNK 220 (807)
Q Consensus 149 ~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~--------el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~ 220 (807)
..++|+| +...|++||+.+... .-+..+|..||+..+..-++.- -||
T Consensus 166 ~~~~y~P------------------f~piC~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~-gKL------ 220 (360)
T PF01921_consen 166 RPETYSP------------------FLPICEKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGN-GKL------ 220 (360)
T ss_dssp --TT--S------------------EEEEETTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT--EEE------
T ss_pred CCCCeee------------------eeeeccccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCc-ccc------
Confidence 1122222 234677788753221 1234577778876654322211 111
Q ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEEecccchhhhcccCCchhHhhhc
Q 003611 221 LEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWW 300 (807)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVWfDA~~~yis~~~~~~~~~~~~W 300 (807)
.|-+..|. +|+
T Consensus 221 ---------------------------------------~WkvDW~m------------------------------RW~ 231 (360)
T PF01921_consen 221 ---------------------------------------QWKVDWPM------------------------------RWA 231 (360)
T ss_dssp ----------------------------------------HHHHHHH------------------------------HHH
T ss_pred ---------------------------------------cCCCcChh------------------------------hhh
Confidence 11111110 111
Q ss_pred CCCCCcceEEEEEeccccchhchHHH--Hh-hhCCCCcccCeEEEeeceeecCCC-ccccccCCccChhhhhhcCCCchh
Q 003611 301 KNPENVELYQFMGKDNVPFHTVMFPS--TL-LGTGENWTLMKTISVTEYLNYESG-KFSKSKGIGVFGNDAKDTNIPVEV 376 (807)
Q Consensus 301 ~~p~d~~~ih~iGkDii~fH~i~~pa--~l-~a~~~~~~~p~~i~~hg~l~~~G~-KMSKS~GN~I~~~d~l~~~~~~D~ 376 (807)
.-..| +--.|||+.-.=..+=.+ +. ..+|. ++| .-+..+|++++|. |||||+||+|++.|+++ -+++++
T Consensus 232 ~lgVd---fEp~GKDH~~~GGS~d~~~~I~~~i~g~--~pP-~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~-~~~PE~ 304 (360)
T PF01921_consen 232 ALGVD---FEPFGKDHASPGGSYDTSKRIAREILGY--EPP-VPFPYEFFLDKGGGKMSSSKGNGITPEEWLE-YAPPES 304 (360)
T ss_dssp HTT-S---EEEEEHHHHCTTSHHHHHHHHHHHCC--------EEEEE--EEES--------------HHHHHT-TS-HHH
T ss_pred hcCce---eccCCCccCCCCCChhhHHHHHHHHhCC--CCC-CCCCeeEEEeCCCcccccCCCCccCHHHHHH-hcCHHH
Confidence 11344 466899965421111112 12 22443 344 4556788887766 99999999999999998 699999
Q ss_pred HHHHHHhcCCCCCCccccHH-HHH
Q 003611 377 WRYYLLTNRPEVSDTLFTWA-DLQ 399 (807)
Q Consensus 377 lR~~ll~~~~~~~D~~Fs~~-~l~ 399 (807)
|||++++..| .+..+|+.+ .+-
T Consensus 305 lr~l~~~~~P-~~~~~~~~~~~i~ 327 (360)
T PF01921_consen 305 LRYLMARTKP-NKAKDFSFDLVIP 327 (360)
T ss_dssp HHHHHHCS-T-TS-EEE--STTHH
T ss_pred HHHHHcccCC-CcceEeccCcchH
Confidence 9999999555 566666666 443
No 80
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.7e-17 Score=181.87 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=71.8
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhH--------HH-HHHHHHcCC-------
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGT--------AT-ETKAMEDNC------- 85 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~--------~i-~~~A~~~g~------- 85 (807)
..+.|-|++ +|+|.+|||+++. ++.+|+++|.+|.+|++|.+++=+|+++- |= +...+-.|+
T Consensus 19 ~~~~v~tGi-sPSG~~HIGn~rE-v~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPd 96 (521)
T COG1384 19 DEYVVATGI-SPSGLIHIGNFRE-VLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPD 96 (521)
T ss_pred CcEEEecCc-CCCCCcccccHHH-HHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCC
Confidence 456667775 9999999999998 68899999999999999999999999852 11 222233344
Q ss_pred ---CHHHHHHHHHHHHHHHHhhcCcccccc
Q 003611 86 ---SPKEICDKYHVIHKDVYKWFDISFDNF 112 (807)
Q Consensus 86 ---~p~e~~~~~~~~~~~~~~~lgI~~D~f 112 (807)
.+..+++++.+.|.+.++.|||.+...
T Consensus 97 P~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 97 PFGCCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCceEEE
Confidence 356799999999999999999998754
No 81
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.74 E-value=1.9e-17 Score=159.46 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=73.7
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (807)
|+++.|||||.+||||+++ ++.+|+++||+|++|++|.+++|+|++|.++...|.+.+.+++++++.+.+.|+++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~-~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRT-IVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHH-HHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4577899999999999998 5789999999999999999999999999999999999999999999999999999998
No 82
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=99.72 E-value=8.9e-18 Score=152.02 Aligned_cols=91 Identities=31% Similarity=0.533 Sum_probs=79.7
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEee---------eccccccccccceeEE
Q 003611 651 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLC---------NLKPVAMRGIKSHAMV 721 (807)
Q Consensus 651 ~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~---------nlk~~k~~G~~S~gMl 721 (807)
++||+|+++++||++++|++++||+|.++.+||+||+.++.. |++|+++. ||++++|+|+.|+|||
T Consensus 1 ~~vg~I~~~~~hp~~~kL~~~~vd~g~~~~~~Iv~~~~n~~~-----g~~vvv~~~gs~l~~~~~i~~~~~~G~~S~GMl 75 (103)
T cd02796 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVRA-----GDKVVVALPGAVLPGGLKIKKRKLRGVESEGML 75 (103)
T ss_pred CEEEEEEEEEecCCCCceEEEEEEeCCCcEEEEEcCccHhhc-----CCEEEEEecCCCcCCCceEcceeeCCcccchhC
Confidence 689999999999999999999999997678999999999844 99999887 9999999999999999
Q ss_pred eeeec---CCCCeEEEEcCCCCCCCCcee
Q 003611 722 LCAST---SDNTKVELVEPPKSAKIGERV 747 (807)
Q Consensus 722 l~~~~---~~~~~~~ll~~~~~~~~G~~v 747 (807)
||+.+ ++ ....++.+|+++++|+++
T Consensus 76 ~s~~elg~~~-~~~gi~~l~~~~~~G~~~ 103 (103)
T cd02796 76 CSAKELGLGE-DSDGIIELPEDAPVGTDI 103 (103)
T ss_pred cchhHcCCCC-CCCeEEECCCCCCCCCCC
Confidence 99965 11 134588888899999864
No 83
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.65 E-value=7.8e-16 Score=169.81 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=92.6
Q ss_pred CCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHH----------------
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME---------------- 82 (807)
Q Consensus 19 ~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~---------------- 82 (807)
...+++.|--.=|.|+|++||||+|++ +.+|+++|.++..||+|.-..-+.|.|..+..-+..
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~-iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNT-IIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHH-HHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhh-hhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 345678787777999999999999996 559999999999999998888788877755332211
Q ss_pred ---------------cCC------------------------CHHHHHHH-HHHHHHHHHhhcCcccccccCCCChhHHH
Q 003611 83 ---------------DNC------------------------SPKEICDK-YHVIHKDVYKWFDISFDNFGRTSTPQQTE 122 (807)
Q Consensus 83 ---------------~g~------------------------~p~e~~~~-~~~~~~~~~~~lgI~~D~f~rT~~~~~~~ 122 (807)
... ...++... +.+.+++++.+|++.+|.+...++-.+..
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEHCHHHHTT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccchhhhhh
Confidence 000 11223334 66788899999999999887666667778
Q ss_pred HHHHHHHHHHhCCCeeeeeeeeeecC
Q 003611 123 ACQAIFKKLLDNNWLIENTMQQPYCD 148 (807)
Q Consensus 123 ~v~~~f~~L~~~G~iy~~~~~~~y~~ 148 (807)
.+.+++++|.++|++|+.++..|...
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~~i~~ 201 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGALWIDL 201 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEEEEEG
T ss_pred HHHHHHHHHHhCCcEEecCCcEEEec
Confidence 89999999999999998887777643
No 84
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.60 E-value=8.4e-15 Score=135.76 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Q 003611 403 NNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSE 481 (807)
Q Consensus 403 n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i-~~l~~~ 481 (807)
++++++.++|+++|+.+++.+ ++++..|.. .....|+++++.++.+.+++.++|++|+|++|++.+ +++.+.
T Consensus 2 ~~~~~~~~~~~l~R~~~~~~~----~~~~~~~~~---~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~ 74 (117)
T cd07959 2 REEEANSAILRLERFYELAEE----LIETEGELE---ELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQND 74 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----HHhccCCcc---ccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 467899999999999999987 455544431 234578999999999999999999999999999997 899999
Q ss_pred HHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHh
Q 003611 482 GNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (807)
Q Consensus 482 ~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (807)
+|+|++..+|| ....++.++++.++++|+|||||+|+++|++|
T Consensus 75 ~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 75 LDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 99999999988 12356788999999999999999999999875
No 85
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.55 E-value=1.4e-13 Score=131.27 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=104.6
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 003611 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (807)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al 472 (807)
||.+.+... ..++++++|++..+...+.. .+ .+..........+++++..++.+.+++.++|++|+|++|+
T Consensus 1 ~~~~~~~~~--~~~l~k~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al 71 (135)
T cd07962 1 FDEKRVEGG--RNFCNKLWNAARFVLMNLED-----DD--EPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAA 71 (135)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccc-----cC--ccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 566667654 67889999998865332111 11 1100001123457899999999999999999999999999
Q ss_pred HHHHHHHH--HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHh
Q 003611 473 KTAMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (807)
Q Consensus 473 ~~i~~l~~--~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (807)
+.+++++. .+|+|++..+||.+. .+.+++.++++++.++++.++++|+||||++|+++|++|
T Consensus 72 ~~i~~~~~~~~~N~Yi~~~~pW~~~-~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 72 TALYEFFWNDFCDWYLELVKPRLYG-EDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHcC-CChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 99999997 799999999999884 344567788999999999999999999999999999875
No 86
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.52 E-value=2.3e-13 Score=136.26 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=106.1
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCC-cCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 003611 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGS-IVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQG 471 (807)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g-~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~a 471 (807)
|+.+.+.+. ++++++++|.++.+..-+.. +.. ..... .......|+|++++++.+.+++.++|++|+|+.|
T Consensus 1 i~~~~~~~~--~~~~~Kl~N~~rf~~~~~~~-----~~~~~~~~~-~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a 72 (180)
T cd07960 1 ISDEILKQV--AEAYRKIRNTFRFLLGNLND-----FDPAKDAVP-YEELLELDRYALHRLNELIKEVREAYENYEFHKV 72 (180)
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHcccC-----CCcccccCC-hhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 456667765 67999999999987643322 111 01000 0123567899999999999999999999999999
Q ss_pred HHHHHHHHH--HHHHHHHhhcchhhc--cCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 472 LKTAMSISS--EGNAYLQESQFWKLY--KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 472 l~~i~~l~~--~~N~yi~~~~pw~l~--k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
++.+++|+. .+|.|++..+||.+. ++++.+ ..+..++..+++.++++|+|||||+|++||++||.
T Consensus 73 ~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~ 141 (180)
T cd07960 73 YQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLER-RSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPG 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceecCCCCCHHH-HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccc
Confidence 999999995 689999999999874 233332 45667888899999999999999999999999985
No 87
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.50 E-value=1.7e-13 Score=126.84 Aligned_cols=110 Identities=21% Similarity=0.307 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Q 003611 409 NLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQE 488 (807)
Q Consensus 409 ~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~ 488 (807)
...|+++|+.+++.+ ++++.+|..........|+++++.+..+.+++.++|++|+|++|++.++++++.+|+|++.
T Consensus 8 ~~~n~l~R~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~ 83 (117)
T cd07958 8 GAYRFLNRVWRLVTE----LAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKYKKK 83 (117)
T ss_pred HHHHHHHHHHHHHHH----HHhhccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcc
Confidence 346777777777665 4445444310012234689999999999999999999999999999999999999999987
Q ss_pred hcchhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHh
Q 003611 489 SQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535 (807)
Q Consensus 489 ~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~L 535 (807)
.+| +++++.++++.++++|+||||++|+++|++|
T Consensus 84 ~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 84 DAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred ccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 665 3567889999999999999999999999875
No 88
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.49 E-value=1.3e-12 Score=149.36 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=78.5
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
++|=-+|.|||.+|||||+++ +..+.++| .|...|+.-+||.+.+|.+ ....+.+.+.+++++
T Consensus 102 V~tRFaPsPtG~LHIGharaa-lln~~~Ar-----~~~G~~iLRidDTDpk~~R-----------~~~e~~~~I~edL~w 164 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAA-ILNDEYAK-----MYGGKFILRFEDTDPRTKR-----------PDPEAYDMILEDLKW 164 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEeEccCCCCccc-----------chHHHHHHHHHHHHH
Confidence 455566899999999999985 66999998 6788899999998876632 123344788999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||+.+|..+++| .|.+...+..++|.++|++|.
T Consensus 165 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 165 LGVKWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred cCCCCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 999999776766 677888999999999999994
No 89
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=99.43 E-value=1.8e-13 Score=166.21 Aligned_cols=91 Identities=27% Similarity=0.466 Sum_probs=77.9
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEe---------eeccccccccccceeEE
Q 003611 651 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVL---------CNLKPVAMRGIKSHAMV 721 (807)
Q Consensus 651 ~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~---------~nlk~~k~~G~~S~gMl 721 (807)
++||+|+++++||++|+|++|+||+|+++++|||||+.|... |++|+++ .+|++++|||+.|+||+
T Consensus 46 ~~vg~i~~~~~hp~~~~L~~~~vd~g~~~~~~Iv~ga~n~~~-----g~~V~va~~Ga~l~~~~~i~~~~~~Gv~S~GMl 120 (798)
T TIGR00472 46 VVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGAPNVEA-----GKKVAVALPGAKLPNGLKIKKSKLRGVESEGML 120 (798)
T ss_pred EEEEEEEEEEecCCCCcEEEEEEEcCCCceEEEEeCCccccC-----CCEEEEEccCCCccCCceEeeeecCCeeechhc
Confidence 999999999999999999999999997678999999999765 9999887 56999999999999999
Q ss_pred eeeec----CCCCeEEEEcCCCCCCCCceee
Q 003611 722 LCAST----SDNTKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 722 l~~~~----~~~~~~~ll~~~~~~~~G~~v~ 748 (807)
||+.+ +++.+ ++.+|.++++|+++.
T Consensus 121 cs~~elg~~~~~~g--i~~l~~~~~~G~~~~ 149 (798)
T TIGR00472 121 CSEDELGLDEKSDG--IIVLDEDAPLGTDIA 149 (798)
T ss_pred ccHhHcCCCCCCCC--EEEcCCCCCCCccHH
Confidence 99865 11223 555677889998773
No 90
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.37 E-value=1.3e-11 Score=124.06 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=103.3
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 003611 393 FTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGL 472 (807)
Q Consensus 393 Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al 472 (807)
||++.+... .+.++++|+|++++++..+... .++..............|+|++.++++++.++.++|++|+|+.|+
T Consensus 1 ~s~~~v~~~-~~~f~~KlwN~~rf~l~~~~~~---~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~ 76 (183)
T cd07961 1 FSEKGVREV-VRKVLLPLWNAYRFFVTYANLD---GFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAV 76 (183)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh---CCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 677887664 3569999999998886533220 121110000001235689999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhhcc--hhhccCChHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhCC
Q 003611 473 KTAMSISSE-GNAYLQESQF--WKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 473 ~~i~~l~~~-~N~yi~~~~p--w~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~P~~a~~i~~~Lg~ 537 (807)
+.++.|+.. ++.|++..++ |... +.........++..+++.+..+|+|||||+||+||++++-
T Consensus 77 ~~l~~f~~~~~~~Y~e~~K~~~~~~~--~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~ 142 (183)
T cd07961 77 RALLEFIDELTNWYIRRNRKRFWGEE--GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRR 142 (183)
T ss_pred HHHHHHHHHhhhhHhhhchHHhcCCC--CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 999999976 5889988664 4322 1223345677888999999999999999999999999974
No 91
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.36 E-value=6.5e-13 Score=161.13 Aligned_cols=95 Identities=31% Similarity=0.502 Sum_probs=75.1
Q ss_pred eEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCC----chhcCCCEEEEeeeccccccccccceeEEeeee
Q 003611 650 DIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIP----LEEMQERMVCVLCNLKPVAMRGIKSHAMVLCAS 725 (807)
Q Consensus 650 ~~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~----~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~~ 725 (807)
.++||+|+++++||++|||++|+||+|+ +.+|||||++|+.. +.+++|.+++...+|++++|||+.|+||+||++
T Consensus 44 ~i~vg~i~~~~~hp~~~~L~v~~v~~g~-~~~~iv~ga~n~~~g~~v~~a~~G~~l~~~~~i~~~~~~Gv~S~GMlcs~~ 122 (791)
T PRK00629 44 GVVVGKVLECEKHPNADKLRVCQVDVGE-EPLQIVCGAPNVRAGDKVPVALPGAVLPGGFKIKKAKLRGVESEGMLCSAS 122 (791)
T ss_pred CEEEEEEEEEEecCCCCeEEEEEEEcCC-eEEEEEeCCccccCCCEEEEEccCCCccCCceEeeeecCCeEEchhcccHh
Confidence 3999999999999999999999999997 56999999999854 333334433334569999999999999999985
Q ss_pred c----CCCCeEEEEcCCCCCCCCcee
Q 003611 726 T----SDNTKVELVEPPKSAKIGERV 747 (807)
Q Consensus 726 ~----~~~~~~~ll~~~~~~~~G~~v 747 (807)
+ +++++ |+.+|.++++|+.+
T Consensus 123 ELGl~~~~~G--I~~L~~~~~~G~~~ 146 (791)
T PRK00629 123 ELGLSDDHDG--IIELPEDAPVGTDA 146 (791)
T ss_pred HcCCCcCCCC--eEECCCCCCCCccH
Confidence 5 12223 55566778889877
No 92
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.33 E-value=7.1e-12 Score=121.93 Aligned_cols=90 Identities=27% Similarity=0.418 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-H-HHHHHHHhhcchhhccCChHHHHHHHHHHHHHHHHHHHhccc
Q 003611 445 TKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS-S-EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEP 522 (807)
Q Consensus 445 d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~-~-~~N~yi~~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P 522 (807)
|+|+++.++.+.+++.++|++|+|+.|+..+++|+ . .+|+|++..+||...+.+..... +++++.++++.++++|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 68999999999999999999999999999999974 4 46999999999998766544444 889999999999999999
Q ss_pred cchHHHHHHHHHh
Q 003611 523 FMPSFSVEVNKQL 535 (807)
Q Consensus 523 ~~P~~a~~i~~~L 535 (807)
|||++|+++|++|
T Consensus 80 ~~P~~aEeiw~~l 92 (153)
T PF08264_consen 80 FMPFIAEEIWQRL 92 (153)
T ss_dssp TSHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHh
Confidence 9999999999877
No 93
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.29 E-value=6.4e-11 Score=121.78 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=76.1
Q ss_pred EcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 003611 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (807)
Q Consensus 27 t~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lg 106 (807)
|=-.|+|||.+||||++++ +..++++| ++++.|+..+||.+.+.. + ....+.+.+.+++++||
T Consensus 4 ~RfaPsPtG~lHiG~~rta-l~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wLG 66 (240)
T cd09287 4 MRFAPNPNGPLHLGHARAA-ILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWLG 66 (240)
T ss_pred EeCCCCCCCCccHHHHHHH-HHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHcC
Confidence 3445899999999999985 67999999 789999999999987763 1 12233345889999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 107 ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 107 I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
+.+|..++.+ +|.+..+++.++|.++|++|.
T Consensus 67 l~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 67 VKWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 9999665555 677888899999999999996
No 94
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.20 E-value=1.7e-10 Score=106.24 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 003611 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQ 487 (807)
Q Consensus 408 ~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~ 487 (807)
.+++|.+.|++.++.+ ++.+..|........+.|+++++.++.+.+++.++|++|+++.|++.+++|+...|+|++
T Consensus 8 ~~~~n~~~r~~~~~~~----~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y~~ 83 (117)
T cd07375 8 RAFLNRLYRLLSFFRK----ALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWYLD 83 (117)
T ss_pred HHHHHHHHHHHHHHHH----hcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHHHH
Confidence 3478888888877665 344443321101123568899999999999999999999999999999999999999999
Q ss_pred hhcchhhccCChHHHHHHHHHHHHHHHHHHHhccccc
Q 003611 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFM 524 (807)
Q Consensus 488 ~~~pw~l~k~~~~~~~~~l~~~~~~l~~l~~lL~P~~ 524 (807)
..+||.+.+. ....++.++.++++.++++|+|||
T Consensus 84 ~~~pw~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 84 ELKPALQTEE---LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HhhHHHcCch---hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999998652 344567788899999999999997
No 95
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=99.09 E-value=1.6e-10 Score=109.38 Aligned_cols=75 Identities=33% Similarity=0.452 Sum_probs=67.2
Q ss_pred eeeEEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccccccccceeEEeeeecC
Q 003611 648 RLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTS 727 (807)
Q Consensus 648 ~~~~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k~~G~~S~gMll~~~~~ 727 (807)
.+++.||.|.++.+||++|+||+|.||+|.. .++||++.-.+.. |.+| +|+-|.||.+.|+.|+||+|.+.+-
T Consensus 119 aV~~vvGEV~Sv~~hp~aD~L~v~vvn~G~r-~~tVVTN~~~vre-----g~~v-aVAlLPPr~F~gvvSeGMFlg~~d~ 191 (219)
T COG2517 119 AVDIVVGEVMSVGKHPNADKLLVTVVNIGGR-AVTVVTNDLDVRE-----GDRV-AVALLPPRNFFGVVSEGMFLGAKDV 191 (219)
T ss_pred eEEEEeeeeeecccCCCCCceEEEEEecCCe-EEEEEeccccccc-----CCEE-EEEecChhHhccccccceeeccccc
Confidence 5899999999999999999999999999974 6899999988877 9887 4568999999999999999999654
Q ss_pred CC
Q 003611 728 DN 729 (807)
Q Consensus 728 ~~ 729 (807)
++
T Consensus 192 ~g 193 (219)
T COG2517 192 DG 193 (219)
T ss_pred cC
Confidence 43
No 96
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=5.3e-07 Score=96.63 Aligned_cols=349 Identities=17% Similarity=0.215 Sum_probs=210.3
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHH----HHHHHHH-----
Q 003611 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTA----TETKAME----- 82 (807)
Q Consensus 12 ~~~~~~~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~----i~~~A~~----- 82 (807)
.+...|.-+.++.+|.-.-|..--.+|+||+|++ |.+|.++|-+...|++|+-+.-.-+.|+. |+---++
T Consensus 178 ~GV~~P~l~~KrvlVDFSSPNIAKeMHVGHLRST-IIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l 256 (656)
T KOG4426|consen 178 NGVKLPTLSVKRVLVDFSSPNIAKEMHVGHLRST-IIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYL 256 (656)
T ss_pred cCCCCcccceeeEEEecCCCcHHHHhhhhhhhhh-hHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchh
Confidence 3455677778889999888999999999999985 66999999999999999888766555442 2211111
Q ss_pred -------------------------------------cCCC------HHHHHHHHHHHHHHHHhhcCcccccccCCCChh
Q 003611 83 -------------------------------------DNCS------PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQ 119 (807)
Q Consensus 83 -------------------------------------~g~~------p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~ 119 (807)
+|-. ...+|+--.++|...+++|.|+...- -+..
T Consensus 257 ~vsp~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e~---GESF 333 (656)
T KOG4426|consen 257 SVSPPIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKER---GESF 333 (656)
T ss_pred ccCCCchhHHHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhhc---chhh
Confidence 1222 23467888889999999999988532 2235
Q ss_pred HHHHHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCC
Q 003611 120 QTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199 (807)
Q Consensus 120 ~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g 199 (807)
|...+.++.+.|..+|++.+.++..-- | ++| |+
T Consensus 334 Yq~~m~~vveel~~kglvee~~Gr~i~------f-----~~g------------------------------------~~ 366 (656)
T KOG4426|consen 334 YQDRMAEVVEELKSKGLVEEDDGRRIM------F-----PEG------------------------------------CD 366 (656)
T ss_pred hhhHHHHHHHHHhcCCceeecCCceEe------c-----cCC------------------------------------CC
Confidence 667788889999999998876643211 0 111 23
Q ss_pred CceEEeee-cceeEeccchHHHHHHHHHcCCCCCCCChHHHHHHHHHHHcCccceeeeeccCCCCccCccccCCcEEEEE
Q 003611 200 NAPQIRDT-NHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVW 278 (807)
Q Consensus 200 ~~~~~~~~-~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~~~viyVW 278 (807)
-|+.+..+ .-+-++.+.+. .+..-+.+...||- |||-
T Consensus 367 IPLtvVKSDGGftYdtsDla----------------------Al~yRl~EEkadwi--------------------IYVv 404 (656)
T KOG4426|consen 367 IPLTVVKSDGGFTYDTSDLA----------------------ALKYRLNEEKADWI--------------------IYVV 404 (656)
T ss_pred cceEEEecCCCcccccchHH----------------------HHHHHHHHhhcCeE--------------------EEEe
Confidence 34433332 23323333221 11222333345552 3331
Q ss_pred ecccchhhhcccCCchhHhhhcCCCCCcceEEEEEeccccchhchHHHHhhhCCCCcccCeEEEeece--ee-cCCCccc
Q 003611 279 FDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY--LN-YESGKFS 355 (807)
Q Consensus 279 fDA~~~yis~~~~~~~~~~~~W~~p~d~~~ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~--l~-~~G~KMS 355 (807)
|+ |.- ..|.++|-.| -++.=++ +...++.+-|| ++ .||+||-
T Consensus 405 -D~-------------------------------GQs-~Hf~t~fkAa-r~~gwld-~~~~RV~HvgFGlVLGeD~KkFk 449 (656)
T KOG4426|consen 405 -DS-------------------------------GQS-QHFNTIFKAA-RKAGWLD-PTYPRVEHVGFGLVLGEDKKKFK 449 (656)
T ss_pred -eC-------------------------------chh-HHHHHHHHHH-HHcCccC-CCccceeeeeeeeEEccCccccc
Confidence 10 000 1122222111 1111111 22344555555 33 5677888
Q ss_pred cccCCccChhhhhhcC----------------CC-------ch-----hHHHHHHhcCCCCCCccccHHHHHHHHhHHHH
Q 003611 356 KSKGIGVFGNDAKDTN----------------IP-------VE-----VWRYYLLTNRPEVSDTLFTWADLQAKSNNELL 407 (807)
Q Consensus 356 KS~GN~I~~~d~l~~~----------------~~-------~D-----~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~ 407 (807)
+..|.+|-..|+++++ .+ .+ .+.|.=+++. --+|--||.+.+.+- ..+-+
T Consensus 450 TRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hn-R~~dY~FSFDkML~D-rGnTA 527 (656)
T KOG4426|consen 450 TRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHN-RITDYIFSFDKMLED-RGNTA 527 (656)
T ss_pred ccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccc-cccceeeeHHHHhhc-cCcce
Confidence 8888887777766421 01 12 3555555533 357888998887542 23445
Q ss_pred HHHHHHHHHHHHhHhCCCCCCCC--CcCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 003611 408 NNLGNFINRVLSFIAKPPGQGYG--SIVPDA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484 (807)
Q Consensus 408 ~~l~Nl~~R~~~~~~k~~~~~~~--g~ip~~-~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~ 484 (807)
-+|-+.+.|+++++++...++.+ ..+... ....+++-+..+-..+-++.+-+.++++++-++..+..+++++.....
T Consensus 528 vYLLYa~tRIcSI~rksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh~lC~y~y~l~t~Ft~ 607 (656)
T KOG4426|consen 528 VYLLYAYTRICSIARKSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLHVLCDYLYELATLFTE 607 (656)
T ss_pred ehhHHHHHHHHHHHHHcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999998873111000 000111 113345556677778888889999999999999999999999999999
Q ss_pred HHHhhc
Q 003611 485 YLQESQ 490 (807)
Q Consensus 485 yi~~~~ 490 (807)
|++...
T Consensus 608 FY~~Cy 613 (656)
T KOG4426|consen 608 FYDSCY 613 (656)
T ss_pred HhhccE
Confidence 988764
No 97
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.98 E-value=2.9e-08 Score=112.65 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=70.9
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
++|==+|.|||.+|||||+++ +....+||- ..| .|+.=+||.+. ..-...+.+.+.+++++
T Consensus 12 v~tRFAPsPtG~LHiGharaA-lln~l~Ar~--~gG---~~iLRiEDTDp-------------~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAA-LLNDYYARR--YKG---RLILRFDDTNP-------------SKEKAEFEESIIEDLGK 72 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEECCCCC-------------CccchHHHHHHHHHHHH
Confidence 466667999999999999985 568888874 234 44444566543 22234567889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||+.+|..+.++ .|.+..++...+|.++|.+|.
T Consensus 73 LGl~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 73 IEIKPDSVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred hCCCCCCCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 999999766666 566778899999999999995
No 98
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.97 E-value=8.3e-09 Score=117.75 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 003611 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (807)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (807)
.|.|||.+||||++++ |....+||- ..| .|+.=+||.+. .-....+.+.+.+++++|||.+
T Consensus 7 APsPtG~lHiG~~rta-l~n~l~Ar~--~~G---~~iLRieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~ 67 (470)
T TIGR00464 7 APSPTGYLHIGGARTA-LFNYLFAKH--TGG---EFILRIEDTDL-------------ERNIEEAEEAILEGLKWLGISW 67 (470)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH--cCC---EEEEEeCcCCC-------------ccCChHHHHHHHHHHHHCCCCC
Confidence 4899999999999985 667777772 223 45555566543 1123346678899999999999
Q ss_pred c-cccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 110 D-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 110 D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
| -.++.+ ++.+.-+++..+|.++|.+|.
T Consensus 68 de~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 68 DEGPYYQS--QRLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCeeehh--CCHHHHHHHHHHHHHcCCEEe
Confidence 9 334444 344556788889999999994
No 99
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.93 E-value=2.1e-08 Score=112.39 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=69.1
Q ss_pred CCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 003611 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (807)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (807)
.|.|||.+||||||++ |..-.+|| .+.-.|+.=+||.+. ..-.+.+.+.++++|++|||.+
T Consensus 8 APSPTG~lHiG~artA-L~n~l~Ar-----~~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~~ 68 (445)
T PRK12558 8 APSPTGYLHVGNARTA-LLNWLYAR-----KHGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGINW 68 (445)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHH-----HhCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCCC
Confidence 4899999999999985 54666665 466677777777663 1223677789999999999999
Q ss_pred ccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 110 DNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 110 D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
|.+++.+ .....++++.++|.++|++|.
T Consensus 69 De~y~QS--er~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 69 DRTFRQS--DRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred CccccHH--HHHHHHHHHHHHHHHCCCEEE
Confidence 9776655 334578999999999999984
No 100
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.88 E-value=8.6e-08 Score=109.18 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
++|==+|.|||.+|||||+++ +....+||. ..| .|+.=+||.+.. .-...+.+.+.+++++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~--~~G---~~iLRieDTd~~-------------r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSI-CLNFGLAQD--YGG---KCNLRFDDTNPE-------------KEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEECCCCCC-------------cCChHHHHHHHHHHHH
Confidence 456667899999999999985 558888874 223 444445665432 2234567888999999
Q ss_pred cCcccc-cccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||+.+| ..+.++ .|.....+.-.+|.++|.+|.
T Consensus 91 LGi~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 91 LGFDWSGELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred cCCCCCCCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 999996 333444 344445566679999999994
No 101
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.88 E-value=1.3e-07 Score=108.57 Aligned_cols=95 Identities=15% Similarity=0.192 Sum_probs=77.2
Q ss_pred EEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003611 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (807)
Q Consensus 24 ~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (807)
-++|==+|.|||.+|||||++. +..+.+|| .|...|+.-+||.+.+= -...+.+.+.++++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaa-lln~~~Ar-----~~~G~~iLRidDTDp~R-------------~~~e~~~~I~edL~ 153 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAA-ILNQYFAK-----KYKGKLIIRFDDTDPRR-------------VKPEAYDMILEDLD 153 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHH-HHHHHHHH-----hcCCEEEEEeCcCCccc-------------ccHHHHHHHHHHHH
Confidence 3667777999999999999985 66888887 46677888888876531 12246788999999
Q ss_pred hcCcccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 104 WFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 104 ~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
+|||.+|..+++| .|.....++..+|.++|++|.
T Consensus 154 wLGi~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 154 WLGVKGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HcCCCCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 9999999877777 678889999999999999995
No 102
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=7.8e-09 Score=118.01 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=65.7
Q ss_pred EcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 003611 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (807)
Q Consensus 27 t~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lg 106 (807)
|==.|.|||.+||||+|++ +..-.+||- +.=.|+.=+||.+. .-....+.+.+.++|++||
T Consensus 7 ~RfAPSPtG~lHiG~~rta-l~n~l~Ar~-----~~G~fiLRieDtD~-------------~R~~~~~~~~i~~~L~wlG 67 (476)
T PRK01406 7 TRFAPSPTGYLHIGGARTA-LFNWLFARH-----HGGKFILRIEDTDQ-------------ERSTEEAEEAILEGLKWLG 67 (476)
T ss_pred EEeCCCCCCcccHHHHHHH-HHHHHHHHH-----cCCEEEEEeCcCCC-------------CCCChHHHHHHHHHHHHCC
Confidence 3345899999999999986 557777774 23345555566543 1233456678899999999
Q ss_pred cccccc--------cCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 107 ISFDNF--------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 107 I~~D~f--------~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
|.+|.- ++.+ ++...-++..++|.++|.+|.
T Consensus 68 l~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 68 LDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 999933 3444 445677888899999999994
No 103
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.
Probab=98.84 E-value=3.2e-09 Score=114.67 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=58.4
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCC----chhcCCCEEE--Eee-----------------ec
Q 003611 651 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIP----LEEMQERMVC--VLC-----------------NL 707 (807)
Q Consensus 651 ~~vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~----~~~l~g~~v~--~~~-----------------nl 707 (807)
.+||+|+++++||+||+|.+|+||. .|||||+.|+.+ +...+|..+. --. .|
T Consensus 3 ~vv~kV~~i~php~Ad~L~v~~Vd~-----~~vV~ga~n~~~Gd~Vv~a~~gs~Lp~~~~~~~~~~~~~~~~~g~~~~~I 77 (341)
T TIGR02306 3 AVMREIADLQPHPNADALELATVGG-----WEVVVKKGEYRVGSDCVYFPEDSVLPTDAGLFRFLETRAKILDGKMRARV 77 (341)
T ss_pred eEEEEEEEeeecCCCCceEEEEEeC-----EEEEcCCCcCCCCCEEEEECCCCCCCCCCCcchhhccccccccccccceE
Confidence 3799999999999999999999997 899999999877 3444444443 111 68
Q ss_pred cccccccccceeEEeeeec
Q 003611 708 KPVAMRGIKSHAMVLCAST 726 (807)
Q Consensus 708 k~~k~~G~~S~gMll~~~~ 726 (807)
+.++|||+.||||+|+...
T Consensus 78 k~~klRG~~SqGMlcs~~~ 96 (341)
T TIGR02306 78 KTVRLRGEISQGIALPTGA 96 (341)
T ss_pred eEEEeccEEEccEEechhh
Confidence 8899999999999999855
No 104
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.83 E-value=7.5e-08 Score=114.32 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=69.4
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
++|==+|.|||.+|||||++. +....+||- ..| .|+.=+||.+.. .-...+.+.+.+++++
T Consensus 32 v~tRFaPsPtG~lHiGhar~a-lln~~~A~~--~~G---~~~LR~eDTd~~-------------r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSI-LLNFGIARD--YGG---RCHLRMDDTNPE-------------TEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEeCCCCCC-------------cCChHHHHHHHHHHHH
Confidence 566677999999999999985 557777763 233 455556665432 2234567889999999
Q ss_pred cCccccc-ccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||+.+|. .+.++ .|.....+...+|.++|.+|.
T Consensus 93 LG~~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 93 LGFDWGEHLYYAS--DYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred cCCCCCCCceEee--cCHHHHHHHHHHHHHcCCccc
Confidence 9999984 34455 566777888899999999994
No 105
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.83 E-value=7.2e-08 Score=109.60 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 003611 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (807)
Q Consensus 29 ~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~ 108 (807)
=+|.|||.+|||||+++ +....+||- ..| .|+.=+||.+. ..-...+.+.+.+++++||+.
T Consensus 5 FaPsPtG~LHiG~ar~a-l~n~~~A~~--~~G---~~iLRieDTd~-------------~r~~~e~~~~I~~dL~wLG~~ 65 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSI-CLNFGYAKY--YNG---TCNLRFDDTNP-------------VKEDPEYVESIKRDVEWLGFK 65 (522)
T ss_pred cCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEEcCCCc-------------ccCChHHHHHHHHHHHHcCCC
Confidence 46899999999999985 568888873 233 44445566543 112345678899999999999
Q ss_pred cc-cccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 109 FD-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 109 ~D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
+| ..+.++ .|.....+...+|.++|.+|.
T Consensus 66 ~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 66 WEGKIRYSS--DYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCCCceEcc--ccHHHHHHHHHHHHHcCCEEe
Confidence 96 333344 445555677789999999995
No 106
>PLN02907 glutamate-tRNA ligase
Probab=98.81 E-value=2e-07 Score=111.00 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=71.4
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
++|==+|.|||.+|||||+++ +....+||- ..| .|+.=+||.+. ..-...|.+.+.+++++
T Consensus 214 v~tRFaPsPtG~LHiG~ar~a-l~n~~~Ar~--~~G---~~iLR~eDTdp-------------~r~~~e~~~~I~~dl~w 274 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAA-LLNQYFARR--YKG---KLIVRFDDTNP-------------SKESDEFVENILKDIET 274 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEecCCCC-------------CcCChHHHHHHHHHHHH
Confidence 566677999999999999985 668888873 334 34444565543 11234567889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||+.+|..++++ .|.....+...+|.++|.+|.
T Consensus 275 LG~~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 275 LGIKYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred cCCCCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 999999776666 566778899999999999995
No 107
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.79 E-value=3.8e-07 Score=104.77 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=69.7
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
++|==+|.|||.+|||||++. +....+||- ..| .|+.=+||.+. ..-...+.+.+.+++++
T Consensus 53 v~tRFAPsPtGyLHIGharaA-llN~l~Ar~--~gG---~~iLRiEDTDp-------------~R~~~e~~d~IleDL~W 113 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAA-LINSMLADK--YKG---KLVFRFDDTNP-------------SKEKEHFEQAILDDLAT 113 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEEcCCCC-------------cccCHHHHHHHHHHHHH
Confidence 566667999999999999985 668888874 234 44444566543 22344677889999999
Q ss_pred cCccccc-ccCCCChhHHHHHHHHHHHHHhCCCee
Q 003611 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLI 138 (807)
Q Consensus 105 lgI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy 138 (807)
||+.+|. .+.++ .|.....+...+|.++|++|
T Consensus 114 LGl~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 114 LGVSWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCCCCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 9999995 44455 56677889999999999999
No 108
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.79 E-value=1e-07 Score=97.91 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=60.4
Q ss_pred CCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 003611 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (807)
Q Consensus 29 ~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~ 108 (807)
=.|.|||.+||||++++ +....+||- +.-.|+.=+||.+.+ --...+.+.+.+++++||+.
T Consensus 6 FAPsPtG~lHlG~~r~a-l~n~l~Ar~-----~~G~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlGl~ 66 (230)
T cd00418 6 FAPSPTGYLHIGHARTA-LFNFAFARK-----YGGKFILRIEDTDPE-------------RSRPEYVESILEDLKWLGLD 66 (230)
T ss_pred eCCCCCCcccHHHHHHH-HHHHHHHHH-----cCCeEEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCC
Confidence 35899999999999985 557777774 233444445555431 12235667889999999999
Q ss_pred ccc-ccCCCChhHHHHHHHHHHHHHhCC
Q 003611 109 FDN-FGRTSTPQQTEACQAIFKKLLDNN 135 (807)
Q Consensus 109 ~D~-f~rT~~~~~~~~v~~~f~~L~~~G 135 (807)
+|. -++.+ .+.+.-++..++|.++|
T Consensus 67 wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 67 WDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 995 33333 45566677888899988
No 109
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.79 E-value=1.8e-07 Score=96.21 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=67.4
Q ss_pred EcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 003611 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (807)
Q Consensus 27 t~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lg 106 (807)
|==.|.|||.+||||++++ +....++|- ..| .|+.=+||.+.. .....+.+.+.+++++||
T Consensus 4 ~RFAPsPtG~lHlG~~~~a-l~~~l~Ar~--~~G---~~iLRieDtD~~-------------R~~~~~~~~I~~dL~wlG 64 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAI-LLNFGYAKK--YGG---RCNLRFDDTNPE-------------KEEEEYVDSIKEDVKWLG 64 (238)
T ss_pred EecCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEecCCCCc-------------ccchHHHHHHHHHHHHcC
Confidence 3345899999999999985 557777764 233 445556665442 223456678899999999
Q ss_pred cccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 107 ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 107 I~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
+.+|..++.+ ++.+.-++...+|.++|.+|.
T Consensus 65 l~wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 65 IKPYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 9999544444 556777889999999999997
No 110
>PLN02859 glutamine-tRNA ligase
Probab=98.78 E-value=1.9e-07 Score=109.74 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=65.4
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
.+|==+|-|||.+|||||++. +....+||.. .| .|+.=+||.+. ..-...|.+.+.+++++
T Consensus 265 V~tRFaPsPtG~LHiGharaa-llN~~~Ar~~--~G---~~~LRieDTdp-------------~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAM-FVDFGLAKER--GG---CCYLRFDDTNP-------------EAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHH-HHHHHHHHHh--CC---EEEEEecCCCC-------------CccchHHHHHHHHHHHH
Confidence 345556899999999999985 5578888752 33 44445566542 22344677889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||+.+|..++++ .|.+...+.-.+|+++|++|.
T Consensus 326 LG~~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 326 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred cCCCCCCccccc--HhHHHHHHHHHHHHHcCCeEe
Confidence 999998655555 333333345677999999994
No 111
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.77 E-value=5.5e-08 Score=108.60 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 003611 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (807)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (807)
.|.|||.+||||++++ |..-.+||- . .=.|+.=+||.+.. -....+.+.+.++|++|||.+
T Consensus 5 APSPTG~LHiG~artA-L~n~l~Ar~---~--gG~fiLRiEDTD~~-------------R~~~e~~~~I~~~L~WlGl~w 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAA-IFNYIVAKQ---Q--NEDFLIRIEDTDKE-------------RNIEGKDKEILEILNLFGISW 65 (433)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH---c--CCEEEEEeCcCCCC-------------cCChHHHHHHHHHHHHcCCCC
Confidence 3799999999999985 557777763 2 23344445555431 123345678889999999999
Q ss_pred ccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 110 DNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 110 D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
|--++.+ ++...-++..++|.++|.+|.
T Consensus 66 De~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 66 DKLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 9655555 445677788999999999994
No 112
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.75 E-value=1.7e-07 Score=106.67 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=67.6
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (807)
+|==+|.|||.+|||||+++ +....+||. ..| .|+.=+||.+. ..-...+.+.+.+++++|
T Consensus 53 ~tRFaPsPtG~LHiGharaa-lln~~~Ar~--~gG---~~iLRiEDTDp-------------~r~~~e~~~~I~~dL~wL 113 (574)
T PTZ00437 53 YFRFPPEPNGFLHIGHAKSM-NLNFGSARA--HGG---KCYLRYDDTNP-------------ETEEQVYIDAIMEMVKWM 113 (574)
T ss_pred EEEeCCCCCCcccHHHHHHH-HHHHHHHHH--hCC---EEEEEECCCCc-------------cccChHHHHHHHHHHHHc
Confidence 45556899999999999985 558888874 223 44444555542 223456778899999999
Q ss_pred CcccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 106 DISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 106 gI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
|+.+|..+.++ .|.+...+...+|+++|.+|.
T Consensus 114 Gi~~D~~~~qS--~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 114 GWKPDWVTFSS--DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred CCCCCCCCcCc--hhHHHHHHHHHHHHHcCCEEE
Confidence 99999665444 455556677889999999994
No 113
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.73 E-value=3.4e-07 Score=104.03 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=59.6
Q ss_pred EEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHhcCCC-CC
Q 003611 312 MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPE-VS 389 (807)
Q Consensus 312 iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~~~-~~ 389 (807)
.|.|++. |+...-.++.++|. ..| .+.++.+++ .+|.||||+.|.. .+.++.+.+|-+++++=||+.-+.. +.
T Consensus 202 RG~d~~~-~t~~q~~l~~aLG~--~~p-~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG~s~~~ 276 (513)
T PRK14895 202 RGDDHLT-NAARQLAIYQAFGY--AVP-SMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLGWSHGD 276 (513)
T ss_pred ECchHhh-hHHHHHHHHHHcCC--CCC-eEEEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 6888753 22223356677774 345 677778887 8999999999974 6788888899999999999854432 22
Q ss_pred CccccHHHHHHH
Q 003611 390 DTLFTWADLQAK 401 (807)
Q Consensus 390 D~~Fs~~~l~~~ 401 (807)
+--|+.+.+.+.
T Consensus 277 ~e~~~~~el~~~ 288 (513)
T PRK14895 277 DEIISMTQAIDW 288 (513)
T ss_pred cCCCCHHHHHhh
Confidence 335777776654
No 114
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.69 E-value=3e-07 Score=95.21 Aligned_cols=56 Identities=21% Similarity=0.101 Sum_probs=41.3
Q ss_pred HHhhhCCCCcccCeEEEeecee-ecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcC
Q 003611 326 STLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR 385 (807)
Q Consensus 326 a~l~a~~~~~~~p~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~ 385 (807)
+++.++|.+ .|. +.++..+ +.+|.||||+.|+ .++..+.+.++.+++++.|++..+
T Consensus 137 ~l~~aLg~~--~p~-~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 137 LLYEALGWE--PPK-FAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred HHHHHcCCC--CCc-eEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 455666653 443 4445554 5789999999999 577777777899999999998644
No 115
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.6e-07 Score=106.00 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=68.4
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
++|==.|.|||.|||||||++ |....+||. ..|. |+.=+||.+.+ --...+.+.+.++|++
T Consensus 10 v~tRFAPsPtG~LHiG~artA-l~N~~~Ar~--~~G~---fiLRiEDTD~~-------------R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTA-LLNYLYARK--YGGK---FILRIEDTDPE-------------RETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCccchHHHHHH-HHHHHHHHH--hCCE---EEEEecCCCCC-------------CCCHHHHHHHHHHHHh
Confidence 556666899999999999986 568888874 2343 44444554431 1123456788999999
Q ss_pred cCccccc-ccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||+.+|- .++.| ++...-.+...+|.++|.+|.
T Consensus 71 LGl~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 71 LGLDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred cCCCCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 9999997 45555 566777888899999999994
No 116
>PLN02627 glutamyl-tRNA synthetase
Probab=98.63 E-value=3.9e-07 Score=103.67 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=64.8
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (807)
+|==.|.|||.+||||+|++ |....+||- ..| .|+.=+||.+. .-....+.+.+.++|++|
T Consensus 47 r~RFAPSPTG~LHiG~aRtA-L~n~l~Ar~--~gG---~fiLRIEDTD~-------------~R~~~e~~~~I~~~L~WL 107 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTA-LFNYLFARS--KGG---KFVLRIEDTDL-------------ARSTKESEEAVLRDLKWL 107 (535)
T ss_pred EEEeCCCCCCCccHHHHHHH-HHHHHHHHH--hCC---EEEEEeCcCCC-------------CCCChHHHHHHHHHHHHc
Confidence 33334799999999999985 668888872 233 44444555443 112345667889999999
Q ss_pred Ccccccc---------cCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 106 DISFDNF---------GRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 106 gI~~D~f---------~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||.+|.- ++.+ ++.+.-++..++|.++|.+|.
T Consensus 108 Gl~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 108 GLDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred CCCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 9999942 2333 445667788899999999994
No 117
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.46 E-value=1.5e-06 Score=94.43 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=58.2
Q ss_pred CCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 003611 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (807)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (807)
.|.|||.+|||||+++ |....+|| +..| .|+.=+||.+.. .. ...+.+.+.++|++|||.+
T Consensus 7 APsPtG~lHiG~~r~a-l~n~~~Ar--~~~G---~~iLRieDtD~~---------R~----~~~~~~~i~~~L~wlGl~~ 67 (314)
T PF00749_consen 7 APSPTGYLHIGHARTA-LLNYLFAR--KYGG---KFILRIEDTDPE---------RC----RPEFYDAILEDLRWLGLEW 67 (314)
T ss_dssp ---SSSS-BHHHHHHH-HHHHHHHH--HTTS---EEEEEEETSSTT---------TC----HHHHHHHHHHHHHHHT---
T ss_pred CCCCCCCcccchhHHH-HHHHHHHh--ccCc---eEEEeccccccc---------cc----hhhHHHHHHhheeEEEEec
Confidence 4899999999999986 55877777 2334 344445555432 12 2345577889999999999
Q ss_pred c-cccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 110 D-NFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 110 D-~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
| ..++.+ .+.+.-++..++|.++|.+|.
T Consensus 68 D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 68 DYGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp STCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred CCeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 8 444444 567778889999999999984
No 118
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=0.00016 Score=79.87 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=93.6
Q ss_pred CCccccccCCccChhhhhhc---------------------------CCCchhHHHHHHhcCCCCCCccccHHHHHHHHh
Q 003611 351 SGKFSKSKGIGVFGNDAKDT---------------------------NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (807)
Q Consensus 351 G~KMSKS~GN~I~~~d~l~~---------------------------~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n 403 (807)
+.=||+.+|+++...|++++ ..|.-++..-.+. +.-.++..|+|+.+-. .|
T Consensus 365 v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k-~rr~s~yeF~w~~~~~-~~ 442 (567)
T KOG1195|consen 365 VQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFK-GRRISNYEFSWNRVLS-FE 442 (567)
T ss_pred cccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHH-HHhcccceEEhhhhhe-ec
Confidence 35689999998888877651 1445555555544 2235788999998765 56
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCC-----CCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 003611 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDAN-----GAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSI 478 (807)
Q Consensus 404 ~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~-----~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l 478 (807)
.+-.-+|.+..+|..++..+ +....++.. +....+.-..++..|..+.+-+..+++.++....+.+++.+
T Consensus 443 gdtg~yLQY~HsRL~Slerk-----~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~L 517 (567)
T KOG1195|consen 443 GDTGPYLQYTHSRLRSLERK-----FSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKL 517 (567)
T ss_pred CCchHHHHHHHHHHHHHHHh-----ccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH
Confidence 66667899999999998877 333322210 11111224567788888999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 003611 479 SSEGNAYLQES 489 (807)
Q Consensus 479 ~~~~N~yi~~~ 489 (807)
+..++..+...
T Consensus 518 a~a~s~~yk~l 528 (567)
T KOG1195|consen 518 AHAVSSAYKIL 528 (567)
T ss_pred HHHHHhHHhhe
Confidence 99988877653
No 119
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=97.91 E-value=0.00026 Score=69.11 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=87.0
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcC--CCCCCCCChHHHHHH
Q 003611 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV--PDANGAESHQLTKTL 448 (807)
Q Consensus 371 ~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~i--p~~~~~~~~~~d~~l 448 (807)
..|.|++||++++..+ .++.+|+++.+... +++-.-.+.+.+.|+.+++.+... .... ......-..+.++.|
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~~-~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLSF-EGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHhh-cCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHH
Confidence 3678999999999555 79999999996642 344566889999999999987321 0110 000011123457788
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 003611 449 AEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (807)
Q Consensus 449 ~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~ 489 (807)
+..+..+.+.+..++.+.+++.++..+.++....|.|++..
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v 117 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC 117 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999875
No 120
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00023 Score=77.20 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=51.5
Q ss_pred CcccCeEEEeeceeecCCCccccccCCccChhhhhhcCCCchhHHHHHHhcC--CCCCCccccHHHHHHHHhHHHH
Q 003611 334 NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNR--PEVSDTLFTWADLQAKSNNELL 407 (807)
Q Consensus 334 ~~~~p~~i~~hg~l~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~~~--~~~~D~~Fs~~~l~~~~n~~l~ 407 (807)
+|++|+-...-=.++.+|.|.||..|. +.+..+.+.+|=|+++==|++..+ +...+-=|+.+++++.+|-+.+
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieqF~i~~l 336 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQFSIERL 336 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHHhchhhh
Confidence 477887443333456899999999997 467777777888999988887654 3344556788888877654433
No 121
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.74 E-value=5.8e-05 Score=79.88 Aligned_cols=89 Identities=16% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccc
Q 003611 30 LPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109 (807)
Q Consensus 30 ~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~ 109 (807)
.|.|||.+||||++++ |....+||- ..|. |+.=+||.+.. -....+.+.+.+++++|||.+
T Consensus 6 APSPtG~lHiG~~rtA-L~n~l~Ar~--~gG~---~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wLGl~w 66 (272)
T TIGR03838 6 APSPSGPLHFGSLVAA-LGSYLDARA--HGGR---WLVRIEDLDPP-------------REVPGAADDILRTLEAYGLHW 66 (272)
T ss_pred CCCCCCcccHHHHHHH-HHHHHHHHH--hCCE---EEEEeCcCCCC-------------CCChHHHHHHHHHHHHcCCCC
Confidence 4899999999999985 668888882 3343 33334544331 112345678899999999999
Q ss_pred cc-ccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 110 DN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 110 D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
|. .++.+ ++.+.-++..++|.++|.+|.
T Consensus 67 De~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 67 DGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 94 23444 456677888899999999994
No 122
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.64 E-value=6.1e-05 Score=80.63 Aligned_cols=93 Identities=16% Similarity=0.238 Sum_probs=65.4
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (807)
+|==.|.|||.+||||++++ |....+||- .| -.|+.=+||.+.+ .-...+.+.+.++|++|
T Consensus 7 ~~RFAPSPTG~LHlG~~rtA-L~n~l~Ar~---~~--G~~iLRiEDtD~~-------------R~~~~~~~~I~~dL~wl 67 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAA-LGSWLDARA---HG--GRWLLRIEDIDPP-------------REVPGAADAILADLEWL 67 (299)
T ss_pred eEEeCcCCCCcccHHHHHHH-HHHHHHHHH---cC--CEEEEEECcCCCC-------------ccchHHHHHHHHHHHHC
Confidence 44445899999999999985 557777763 33 3444445554431 12235567889999999
Q ss_pred Cccccc-ccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 106 DISFDN-FGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 106 gI~~D~-f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||.+|- .++.+ ++...-++..++|.++|.+|.
T Consensus 68 Gl~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 68 GLHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 999993 33344 456777889999999999994
No 123
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.46 E-value=0.00056 Score=74.85 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=49.4
Q ss_pred cCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 003611 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (807)
Q Consensus 28 ~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI 107 (807)
+++ -|+|.+||||..+. + -.+.+.+...|.+++|.. .|-|-.- . ..+|.++ .++......++-++|+
T Consensus 8 sGi-qPTG~~HLGnylga-~--k~~~~lq~~~~~~~~~~I-ADlHalt---~----~~~~~~l-~~~~~~~~~~~lA~Gl 74 (332)
T PRK12556 8 TGI-KPTGYPHLGNYIGA-I--KPALQMAKNYEGKALYFI-ADYHALN---A----VHDPEQF-RSYTREVAATWLSLGL 74 (332)
T ss_pred EEE-CCCCcchHHHHHHH-H--HHHHHHHHhcCCeEEEEE-echhhcc---C----CCCHHHH-HHHHHHHHHHHhheee
Confidence 443 56799999998763 4 334555555676676654 4555421 1 1256654 3444556778889999
Q ss_pred ccc---cccCCCChhHH
Q 003611 108 SFD---NFGRTSTPQQT 121 (807)
Q Consensus 108 ~~D---~f~rT~~~~~~ 121 (807)
.++ .|..+.-++|.
T Consensus 75 DP~k~~if~qS~v~~~~ 91 (332)
T PRK12556 75 DPEDVIFYRQSDVPEIF 91 (332)
T ss_pred cccceEEEECCCchHHH
Confidence 987 34455555554
No 124
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0025 Score=70.93 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=72.4
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
.+|-=||-|+|.+|||||.-+ | +.-|....+ +=.+++-+|+.. |..=-+++...+.+++..
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAA-L----LNqYfa~~~-~G~LIvRFDDTN-------------PaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAA-L----LNQYFAQAY-QGKLIVRFDDTN-------------PAKENEEFEDVILEDLSL 261 (712)
T ss_pred eEEecCCCCCceeehhhHHHH-H----HHHHHHHhc-CceEEEEecCCC-------------cchhhHHHHHHHHHHHHH
Confidence 455667899999999999864 4 556655443 333455566642 333446677889999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeee
Q 003611 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTM 142 (807)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~ 142 (807)
|||.+|.+..|+ .|-..+.+.-.+|+..|.+|....
T Consensus 262 LgIkpd~~TyTS--DyF~~i~dycv~likeGKAYvDDT 297 (712)
T KOG1147|consen 262 LGIKPDRVTYTS--DYFDEIMDYCVKLIKEGKAYVDDT 297 (712)
T ss_pred hCcCcceeeech--hhHHHHHHHHHHHHhcCcccccCC
Confidence 999999997776 677888899999999999996653
No 125
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=95.05 E-value=0.15 Score=46.90 Aligned_cols=79 Identities=10% Similarity=0.136 Sum_probs=56.7
Q ss_pred HHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003611 411 GNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (807)
Q Consensus 411 ~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (807)
.+.+.|+.+++++..........+... ....+.++.++..+..+...+..+++.++++..++.+.+++...|+|++...
T Consensus 2 ~Ya~aRi~sIl~k~~~~~~~~~~~~~~-~~~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~ 80 (119)
T PF05746_consen 2 QYAYARISSILRKAEESGINDEYDDDF-LLEEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVR 80 (119)
T ss_dssp HHHHHHHHHHHHHCTCTTCCCCHCCHH-HS-SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hHHHHHHHHHHHcCCCcCCccccchhh-hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467889999988732111111111100 1124467889999999999999999999999999999999999999999774
No 126
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.16 E-value=0.25 Score=54.93 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=50.2
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (807)
+++++|.++. -|+|.+||||.. + ...+.++++ .|+++++..+ |.|.. .. + +.++.++- ++...+..
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~-~---~~~~~~lQ~-~g~~~~i~Ia-D~ha~--~~---~-~~~~e~~~-~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKM-V---FDELKWHQE-FGANVYIPIA-DDEAY--AA---R-GLSWEETR-EWAYEYIL 129 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHH-H---HHHHHHHHh-cCCCEEEEec-chHHH--hc---C-CCCHHHHH-HHHHHHHH
Confidence 4567777875 778999999964 2 355666665 7898876654 44432 11 1 45665544 44445677
Q ss_pred HHhhcCcccc
Q 003611 101 VYKWFDISFD 110 (807)
Q Consensus 101 ~~~~lgI~~D 110 (807)
++.++|+.++
T Consensus 130 ~~lA~G~Dp~ 139 (368)
T PRK12285 130 DLIALGFDPD 139 (368)
T ss_pred HHHHhCCCcc
Confidence 8889999987
No 127
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=93.72 E-value=0.22 Score=53.47 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=45.4
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (807)
|.+++ -|+|.+||||+.++ + -.+.+.+ ..|+++++..+ |.|..-. ...++.+ +.++...+..++.++
T Consensus 2 i~tG~-~PTG~lHLG~~~~a-l--~~~~~lQ-~ag~~~~~~Ia-D~ha~t~------~~~~~~~-~~~~~~~~~~~~lA~ 68 (280)
T cd00806 2 VLSGI-QPSGSLHLGHYLGA-F--RFWVWLQ-EAGYELFFFIA-DLHALTV------KQLDPEE-LRQNTRENAKDYLAC 68 (280)
T ss_pred EEEee-CCCchhhHHHHHHH-H--HHHHHHH-hCCCCEEEEec-chHHHhC------CCCCHHH-HHHHHHHHHHHHHHc
Confidence 34453 67899999998874 3 3344444 44999877754 4444311 1134444 445556778888899
Q ss_pred Ccccc
Q 003611 106 DISFD 110 (807)
Q Consensus 106 gI~~D 110 (807)
|+.++
T Consensus 69 G~dp~ 73 (280)
T cd00806 69 GLDPE 73 (280)
T ss_pred CCCcc
Confidence 99885
No 128
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.61 E-value=0.31 Score=52.63 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCC-ceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGY-NAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~-~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (807)
.++.|.|+. -|+|.+||||..+. + ..+++...++ +++|.. .|.|-.-+- +..+++-...+......
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga-~----~~~v~~q~~~~~~f~~I-aDlha~t~~------~~~~~~~l~~~~~e~~a 70 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGA-I----RNWVLLQEEYYECFFFI-ADLHAITVR------QDPTEEDLRQATREVAA 70 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHH-H----HHHHHHhcccCceEEEE-ecHHHhhcC------CCChHHHHHHHHHHHHH
Confidence 455667775 78899999997763 3 5566666674 766544 666643221 22333445556666777
Q ss_pred HHhhcCcccc---cccCCCChhHHHHH
Q 003611 101 VYKWFDISFD---NFGRTSTPQQTEAC 124 (807)
Q Consensus 101 ~~~~lgI~~D---~f~rT~~~~~~~~v 124 (807)
++-++||.++ .|..+..++|.+..
T Consensus 71 ~~LA~GiDP~k~~if~QS~v~e~~eLa 97 (314)
T COG0180 71 DYLAVGLDPEKSTIFLQSEVPEHAELA 97 (314)
T ss_pred HHHHhccCccccEEEEccCchHHHHHH
Confidence 8889999997 47777777766543
No 129
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.54 E-value=0.23 Score=56.59 Aligned_cols=94 Identities=15% Similarity=0.268 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 25 LITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 25 ~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
.+|-=||=|||.+|||||-- |.-++ =|.+..|= |.|+---|. .|+.=.++|...++++..+
T Consensus 249 V~TRFPPEPNG~LHIGHaKA--InvNF--gyAk~~~G-~cyLRfDDT--------------NPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGILHIGHAKA--INVNF--GYAKAHGG-VCYLRFDDT--------------NPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCceeeecchhh--eeech--hhhhhhCC-eEEEecCCC--------------CcchhhHHHHHHHHHHHHH
Confidence 46777899999999999974 31222 23333332 344432332 3444456788899999999
Q ss_pred cCcccccccCCCChhHHHHHHHHHHHHHhCCCeee
Q 003611 105 FDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139 (807)
Q Consensus 105 lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~ 139 (807)
||..+-.. |.+..|-+..-++-..|+.+|++|.
T Consensus 310 LG~~P~kv--TysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGFEPYKV--TYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCCCceee--ecchhHHHHHHHHHHHHHhcCceeE
Confidence 99877433 4333455555566668999999995
No 130
>PLN02486 aminoacyl-tRNA ligase
Probab=93.29 E-value=0.55 Score=52.52 Aligned_cols=87 Identities=13% Similarity=0.000 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCCCCC-cccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (807)
Q Consensus 21 ~~~~~it~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~ 99 (807)
+++++|.++. -|+| .+||||+.. ...++.+++..|..+.++ -+|+ +..+. .+.+..++ .++.....
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv~----~~~~~~lQ~~~~~~~~I~-iaD~-----e~~~~-~~~~~e~i-~~~~~en~ 137 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLIP----FMFTKYLQDAFKVPLVIQ-LTDD-----EKFLW-KNLSVEES-QRLARENA 137 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHHH----HHHHHHHHHhCCCeEEEE-ecCH-----HHHhh-cCCCHHHH-HHHHHHHH
Confidence 4678888885 8999 599999653 455555555556666555 4454 22222 24665544 55556677
Q ss_pred HHHhhcCcccc-cccCCCChhH
Q 003611 100 DVYKWFDISFD-NFGRTSTPQQ 120 (807)
Q Consensus 100 ~~~~~lgI~~D-~f~rT~~~~~ 120 (807)
.++.++|+.++ .|+....+.+
T Consensus 138 ~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 138 KDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred HHHHHhCCCCcceEEEeccHHH
Confidence 77888999886 3444444444
No 131
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=92.19 E-value=0.47 Score=52.11 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 003611 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVY 102 (807)
Q Consensus 23 ~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 102 (807)
+++|.+++ -|+|.+||||..+. + ..++....|+++++..+ |.|-.-. ..+..+..+ ......+..++
T Consensus 2 ~~~v~~G~-~PTG~~HlG~~l~~-~----~~~~~~q~~~~~~i~Ia-D~ha~t~-----~~~~~~~~~-~~~~~~~~~~~ 68 (328)
T TIGR00233 2 KFRVLTGI-QPSGKMHLGHYLGA-I----QTKWLQQFGVELFICIA-DLHAITV-----KDNTDPDAL-RKAREELAADI 68 (328)
T ss_pred CCEEEEee-CCCcHhHHHHHHHH-H----HHHHHHhCCCCEEEEee-cchhhcC-----CCCCCHHHH-HHHHHHHHHHH
Confidence 34566775 78899999997763 3 44455567999877654 4442211 011233333 33444556677
Q ss_pred hhcCcccc
Q 003611 103 KWFDISFD 110 (807)
Q Consensus 103 ~~lgI~~D 110 (807)
-++|+.++
T Consensus 69 lA~GlDp~ 76 (328)
T TIGR00233 69 LAVGLDPK 76 (328)
T ss_pred HHhCcChh
Confidence 88999997
No 132
>PHA02142 putative RNA ligase
Probab=91.52 E-value=0.45 Score=52.33 Aligned_cols=77 Identities=29% Similarity=0.349 Sum_probs=46.1
Q ss_pred eeeEEEEEEEEEEeCCCCCceEEEEEEc-------CC--CccEEEEeCCCCCCCch-----hcCCCEEEE----eeeccc
Q 003611 648 RLDIRVGKITKVQKHPDADALYVEEIDV-------GE--VQPRTVVSGLVKHIPLE-----EMQERMVCV----LCNLKP 709 (807)
Q Consensus 648 ~~~~~vg~i~~~~~hp~adkl~~~~vd~-------G~--~~~~~ivsg~~~~~~~~-----~l~g~~v~~----~~nlk~ 709 (807)
|-=..|-+|..+++||+||.+=+.+||- |+ ..-+-|-+-+..+.+.. -|.++.... -.-|+.
T Consensus 7 RkLv~v~~i~~i~pi~~Ad~ie~a~V~gw~vVV~kg~f~~GD~~vY~eiDS~lP~~~~~~~~l~~~~~~~~g~~~~Ri~t 86 (366)
T PHA02142 7 RQLASMRKIADLQPIPGADAIEVATIDGWEVVVKKGEFRVGDDCVYFEIDSLLPTDNPAFRFLETRARIYDGKMRARIKT 86 (366)
T ss_pred eeEEEEEEEeeecccCCCCceeEEEECCEEEEEeccccccCCeEEEecccccccCCchhhhhhhccccccCCcccceEEE
Confidence 3345788999999999999988888862 11 00122222222222211 121111111 235889
Q ss_pred cccccccceeEEeee
Q 003611 710 VAMRGIKSHAMVLCA 724 (807)
Q Consensus 710 ~k~~G~~S~gMll~~ 724 (807)
.||||..||||+|-.
T Consensus 87 ~klRG~iSQGl~lpl 101 (366)
T PHA02142 87 IKLRGQISQGIALPT 101 (366)
T ss_pred EEEeeEEeeeEEecc
Confidence 999999999999984
No 133
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=91.32 E-value=2.4 Score=39.08 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHHHHHHHhHhCCCCCCCCC-cCCCC----CCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 003611 411 GNFINRVLSFIAKPPGQGYGS-IVPDA----NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAY 485 (807)
Q Consensus 411 ~Nl~~R~~~~~~k~~~~~~~g-~ip~~----~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y 485 (807)
.+.+.|+.+++.+.. .++ .++.. ...-.++.++.++..+..+.+.+..++.+.+++.++..+.+++...|.|
T Consensus 2 qY~~~Ri~nIl~k~~---~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~f 78 (122)
T smart00836 2 QYAHARICSILRKAG---EAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSF 78 (122)
T ss_pred cHHHHHHHHHHHHHH---hcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 356788888877621 111 12210 0111234577888899999888899999999999999999999999999
Q ss_pred HHhhc
Q 003611 486 LQESQ 490 (807)
Q Consensus 486 i~~~~ 490 (807)
++..+
T Consensus 79 y~~v~ 83 (122)
T smart00836 79 YNKCR 83 (122)
T ss_pred HccCc
Confidence 98764
No 134
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=90.69 E-value=0.48 Score=38.52 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.9
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHH
Q 003611 459 YLEAM-EKVKLKQGLKTAMSISSEGNA 484 (807)
Q Consensus 459 ~~~~~-e~~~~~~al~~i~~l~~~~N~ 484 (807)
+.++| ++|+++.|+..|+++++.+|+
T Consensus 2 F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 2 FIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 56788 689999999999999999999
No 135
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=90.16 E-value=0.19 Score=56.89 Aligned_cols=77 Identities=6% Similarity=0.078 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCCCC-cccchHhhhhhhHHHHHHHHHHHCCCceeEecCcch--hhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE--YGTATETKAMEDNCSPKEICDKYHVI 97 (807)
Q Consensus 21 ~~~~~it~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~--hG~~i~~~A~~~g~~p~e~~~~~~~~ 97 (807)
.+++.|.++. -|+| .+||||+. +.. ..|++...|++++++.|--+ .|+|.-...++...+..++. ++...
T Consensus 31 ~~~~~iy~G~-dPT~~sLHlGhlv-~l~----~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~-~n~~~ 103 (410)
T PRK13354 31 GKPLTLYLGF-DPTAPSLHIGHLV-PLM----KLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQ-HNAKT 103 (410)
T ss_pred CCCcEEEEcc-cCCCCCcchhhHH-HHH----HHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHH-HHHHH
Confidence 3456667775 7888 49999955 332 34555568999988886554 56665444444455554444 34444
Q ss_pred HHHHHhh
Q 003611 98 HKDVYKW 104 (807)
Q Consensus 98 ~~~~~~~ 104 (807)
++.++.+
T Consensus 104 i~~q~~~ 110 (410)
T PRK13354 104 YTEQIFK 110 (410)
T ss_pred HHHHHHH
Confidence 5444443
No 136
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.08 E-value=0.21 Score=53.31 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=47.0
Q ss_pred EcCCCCCCC-cccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchh--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 003611 27 TSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY--GTATETKAMEDNCSPKEICDKYHVIHKDVYK 103 (807)
Q Consensus 27 t~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~h--G~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 103 (807)
.+++ -|+| .+||||... .-.+.|+++. |++++++.|-.+. |.|.-+..++.+.++.++ .++...+..++.
T Consensus 4 y~G~-~PTg~~lHLG~~~~----~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i-~~~~~~~~~~~~ 76 (269)
T cd00805 4 YIGF-DPTAPSLHLGHLVP----LMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELI-RENAKYYKKQLK 76 (269)
T ss_pred EEee-CCCCCcccHHHHHH----HHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHH-HHHHHHHHHHHH
Confidence 3443 6789 899999764 2457777665 9998777654331 334333344455666554 444556777777
Q ss_pred hcCcc
Q 003611 104 WFDIS 108 (807)
Q Consensus 104 ~lgI~ 108 (807)
++|..
T Consensus 77 a~g~~ 81 (269)
T cd00805 77 AILDF 81 (269)
T ss_pred HHHcc
Confidence 77765
No 137
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=89.99 E-value=0.23 Score=53.16 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=41.3
Q ss_pred EEEEEeccccchhchHHHHhhhCCC-CcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGE-NWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~-~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
+..+|.|+...+.. +.-.+-.. ..+.|..+.. -+++ .+|.|||||.+|.|+...+.+ +++.++=++.+
T Consensus 156 ~vp~G~DQ~~~i~l---~rdla~r~n~~~~p~~l~~-p~l~~l~G~KMSKS~~~~i~l~~~~d---sp~~i~~ki~~ 225 (273)
T cd00395 156 IQPGGSDQWGNITL---GRELARRFNGFTIAEGLTI-PLVTKLDGPKFGKSESGPKWLDTEKT---SPYEFYQFWIN 225 (273)
T ss_pred EEEecHHHHHHHHH---HHHHHHHhCCCCCCeEEee-ccccCCCCCcCCCCCCCCccccccCC---CHHHHHHHHHc
Confidence 78999999654432 11111111 1234544443 4554 799999999999988765543 46666666665
No 138
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=89.74 E-value=0.87 Score=50.12 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 100 (807)
+++++|.+++ -|+|.+||||+. ++ -.+.++++ .|+++++..+ |.|..-.- ..++. -+.++...+..
T Consensus 28 ~~~~~v~~G~-~PTG~lHLG~~~-~~---~~~~~lq~-~g~~~~i~Ia-D~ha~~~~------~~~~~-~i~~~~~~~~~ 93 (329)
T PRK08560 28 KEEPKAYIGF-EPSGKIHLGHLL-TM---NKLADLQK-AGFKVTVLLA-DWHAYLND------KGDLE-EIRKVAEYNKK 93 (329)
T ss_pred CCCCEEEEcc-CCCCcchhhhhH-HH---HHHHHHHH-CCCeEEEEEc-cchhhcCC------CCCHH-HHHHHHHHHHH
Confidence 3455566775 788999999954 32 34666665 5888766654 33332110 02443 44455567888
Q ss_pred HHhhcCcccc
Q 003611 101 VYKWFDISFD 110 (807)
Q Consensus 101 ~~~~lgI~~D 110 (807)
++.++|+.++
T Consensus 94 ~~~A~G~dp~ 103 (329)
T PRK08560 94 VFEALGLDPD 103 (329)
T ss_pred HHHHcCCChh
Confidence 8999999876
No 139
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.14 E-value=1.5 Score=49.46 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=58.4
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (807)
|.+++ -|+|.|||||..+. | . -+.+.+...|++++|.. .|-|-.- ...+|.++.+.. ..+..+|-++
T Consensus 5 vlSGi-qPTG~lHLGNylGa-i-k-~~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~lr~~~-~e~aa~~LA~ 71 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGA-I-R-PAIAASRQPGVESFYFL-ADYHALI-------KCDDPARIQRST-LEIAATWLAA 71 (431)
T ss_pred EEEEe-cCCCcchHHHHHHH-H-H-HHHHHHHhCCCcEEEEe-echhhcc-------CCCCHHHHHHHH-HHHHHHHHHh
Confidence 45665 78899999997773 4 2 24455555699986654 4555332 124666655443 4467788899
Q ss_pred Ccccc---cccCCCChhHHHHHHHHHHHHHh
Q 003611 106 DISFD---NFGRTSTPQQTEACQAIFKKLLD 133 (807)
Q Consensus 106 gI~~D---~f~rT~~~~~~~~v~~~f~~L~~ 133 (807)
|+.++ .|..+.-++|.+. .|++..+-.
T Consensus 72 GlDPek~~if~QSdvpeh~EL-~wiL~~it~ 101 (431)
T PRK12284 72 GLDPERVTFYRQSDIPEIPEL-TWLLTCVAG 101 (431)
T ss_pred CCCccceEEEECCcchhHHHH-HHHHHhhhh
Confidence 99987 4555666766543 455554433
No 140
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=89.11 E-value=0.81 Score=51.82 Aligned_cols=68 Identities=12% Similarity=-0.005 Sum_probs=39.6
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCeEEEeecee-ecCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
++++|.|+...+.. =--+..-.+.. .+ ..+++-.+ ..+|.|||||.||.||..|= ..+++.++=++++
T Consensus 189 iq~gG~DQ~~ni~~-grdl~~r~~~~--~~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 257 (410)
T PRK13354 189 LQIGGTDQWGNILM-GRDLQRKLEGE--EQ-FGLTMPLLEGADGTKMGKSAGGAIWLDPE---KTSPYEFYQFWMN 257 (410)
T ss_pred EEEecHHHHHHHHH-HHHHHHHhCCC--Cc-eEeccCCccCCCCCccCCCCCCceeccCC---CCCHHHHHHHHHc
Confidence 78899998543322 00111112221 22 22233334 37899999999999999873 3456666666665
No 141
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=89.04 E-value=1.1 Score=49.25 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=36.4
Q ss_pred EEEEEeccccchhchHHHHhhhCC----CCcccCeEEEeece---e-ecCCCccccccCC-ccChhhhhhcCCCchhHHH
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTG----ENWTLMKTISVTEY---L-NYESGKFSKSKGI-GVFGNDAKDTNIPVEVWRY 379 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~----~~~~~p~~i~~hg~---l-~~~G~KMSKS~GN-~I~~~d~l~~~~~~D~lR~ 379 (807)
+..+|.|+...|-+ ---+....+ .-++.|..++ |.+ + -++|+|||||.+| .|+..| +++.+|=
T Consensus 142 ~vpvG~DQ~~h~el-aRdia~r~n~~~~~~f~~P~~l~-~~~~~~l~gl~~~KMSKS~~~s~I~L~D------~~e~I~~ 213 (328)
T TIGR00233 142 LVPVGIDQDQHLEL-TRDLAERFNKKFKNFFPKPESLI-SKFFPRLMGLSGKKMSKSDPNSAIFLTD------TPKQIKK 213 (328)
T ss_pred eeecccccHHHHHH-HHHHHHHhhhhcCcccCCChhhh-ccccCCCCCCCCCcCCCCCCCCeEeecC------CHHHHHH
Confidence 78899999765432 111111122 1123565544 333 2 2456899999997 886644 2444554
Q ss_pred HHHh
Q 003611 380 YLLT 383 (807)
Q Consensus 380 ~ll~ 383 (807)
-+.+
T Consensus 214 KI~~ 217 (328)
T TIGR00233 214 KIRK 217 (328)
T ss_pred HHHh
Confidence 4444
No 142
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=88.96 E-value=0.64 Score=44.96 Aligned_cols=86 Identities=22% Similarity=0.311 Sum_probs=47.6
Q ss_pred HHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC---C-HHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHH
Q 003611 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNC---S-PKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAI 127 (807)
Q Consensus 52 ~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~---~-p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~ 127 (807)
+||++|+.||++.|.. +.-+..|...|.++|. | -.++ +++. ++|+.- .|+++.+ +.+.+.++
T Consensus 18 LARwLRllGydt~~~~--~~~d~~i~~i~~~e~rIllTRDr~L-------~~r~--k~g~~~-i~i~~~s--~~~Ql~e~ 83 (165)
T COG1656 18 LARWLRLLGYDTVYSS--NESDDEIILIAKKEGRILLTRDREL-------YKRA--KLGIKA-ILIRSDS--IEEQLAEF 83 (165)
T ss_pred HHHHHHHcCCceeeec--cCCcHHHHHHHhcCCeEEEeccHHH-------HHHh--hccCce-EEEeCCC--HHHHHHHH
Confidence 6999999999999997 3333456666666653 1 1222 1221 344432 4666653 44566666
Q ss_pred HHHHHhCCCeeeeeeeeeecCCCCccc
Q 003611 128 FKKLLDNNWLIENTMQQPYCDTCKRFL 154 (807)
Q Consensus 128 f~~L~~~G~iy~~~~~~~y~~~~~~~l 154 (807)
..++-.++-.. -+.-=|+.|+.-|
T Consensus 84 ~~~~~l~~~~~---~e~~RCp~CN~~L 107 (165)
T COG1656 84 LARLGLKPRLF---PEFSRCPECNGEL 107 (165)
T ss_pred HHHhccchhcc---cccccCcccCCEe
Confidence 66665554111 1123466666544
No 143
>PLN02886 aminoacyl-tRNA ligase
Probab=88.76 E-value=1.9 Score=48.13 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=52.9
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhc
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWF 105 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 105 (807)
|.+++ -|+|.+||||..++ + .-+.++++ |++++|. =.|-|-.-+ ..++.++-+ +...+..+|.++
T Consensus 49 v~sGi-qPSG~lHLGnylGa-i--~~~v~lQ~--~~~~~~~-IADlHAlt~-------~~~~~~lr~-~~~~~~a~~lA~ 113 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGA-I--KNWVALQE--TYDTFFC-VVDLHAITL-------PHDPRELGK-ATRSTAAIYLAC 113 (389)
T ss_pred EEEEE-CCCCccHHHHHHHH-H--HHHHHHhc--cCCEEEE-EecHHHhhC-------CCCHHHHHH-HHHHHHHHHHHc
Confidence 44554 67799999997763 4 34445544 8887544 466665421 236665544 344567788999
Q ss_pred Ccccc---cccCCCChhHHHH
Q 003611 106 DISFD---NFGRTSTPQQTEA 123 (807)
Q Consensus 106 gI~~D---~f~rT~~~~~~~~ 123 (807)
|+.++ .|..+..++|.+.
T Consensus 114 GlDP~ks~if~QS~v~e~~eL 134 (389)
T PLN02886 114 GIDPSKASVFVQSHVPAHAEL 134 (389)
T ss_pred CcCccceEEEEeCCCchhHHH
Confidence 99987 4666666776543
No 144
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=88.36 E-value=0.86 Score=48.76 Aligned_cols=71 Identities=24% Similarity=0.313 Sum_probs=43.2
Q ss_pred CCCC-cccchHhhhhhhHHHHHHHHHHHCCCceeEecCcch-h-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcc
Q 003611 32 YVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE-Y-GTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDIS 108 (807)
Q Consensus 32 y~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~-h-G~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~ 108 (807)
-|+| .+||||+.+ + ..+.++++ .|++++++.|-.+ . |+|.-...++.-.++ +-+.++...+..++.++|+.
T Consensus 7 ~PTg~~lHlGh~~~--l--~~~~~lq~-~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~-~~i~~n~~~~~~~~~a~g~d 80 (273)
T cd00395 7 DPTADSLHIGHLIG--L--LTFRRFQH-AGHRPIFLIGGQTGIIGDPSGKKSERTLNDP-EEVRQNIRRIAAQYLAVGIF 80 (273)
T ss_pred cCCCCCccHHHHHH--H--HHHHHHHH-CCCCEEEEEecCceeeCCCCCccccccCCCH-HHHHHHHHHHHHHHHHhcCc
Confidence 6779 699999775 2 44555554 6999888765221 1 333212222222344 44555577788889999987
No 145
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=88.31 E-value=1.3 Score=55.46 Aligned_cols=77 Identities=18% Similarity=0.358 Sum_probs=54.1
Q ss_pred HHHHHHHHHH---HhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccC
Q 003611 122 EACQAIFKKL---LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198 (807)
Q Consensus 122 ~~v~~~f~~L---~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~ 198 (807)
..+++..+.. .+.+-+..-+.....||+|++.... ..||. ||+.-.---.|..||..+.+.+-....|+.|
T Consensus 642 R~I~kAa~~a~~~~d~~G~ieVEV~~rkCPkCG~~t~~----~fCP~--CGs~te~vy~CPsCGaev~~des~a~~CP~C 715 (1337)
T PRK14714 642 RDVAKAAKHAPDMSDEGGVIEVEVGRRRCPSCGTETYE----NRCPD--CGTHTEPVYVCPDCGAEVPPDESGRVECPRC 715 (1337)
T ss_pred ccHHHHHHhhhhccccCCeEEEEEEEEECCCCCCcccc----ccCcc--cCCcCCCceeCccCCCccCCCccccccCCCC
Confidence 3455555433 3455555777778999999987553 38999 9986533448999999876654335689999
Q ss_pred CCceEE
Q 003611 199 RNAPQI 204 (807)
Q Consensus 199 g~~~~~ 204 (807)
|.++.-
T Consensus 716 Gtplv~ 721 (1337)
T PRK14714 716 DVELTP 721 (1337)
T ss_pred CCcccc
Confidence 988763
No 146
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=87.72 E-value=0.34 Score=54.86 Aligned_cols=68 Identities=15% Similarity=0.017 Sum_probs=40.3
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
++.+|.|+...+. .=--+..-.+. . +...+..-.|+ .+|+|||||.||.|+..|- ..+++.++=++++
T Consensus 191 i~~gG~DQ~~ni~-~grdla~r~~~--~-~~~~l~~plL~~~~G~KMsKS~~naI~L~d~---~tsp~~i~qki~~ 259 (408)
T PRK05912 191 LQLGGSDQWGNIL-SGRDLQRRYGG--K-PQFGLTMPLLTGLDGKKMGKSEGNAVWLDEE---KTSPYEMYQKWMN 259 (408)
T ss_pred EEeccHHHHHHHH-HHHHHHHHhCC--C-CeEEEecCCcCCCCCCcccCCCCCceeCCCC---CCCHHHHHHHHhc
Confidence 7889999964322 11111111221 1 11122233343 7899999999999999873 3567777777776
No 147
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=87.42 E-value=0.27 Score=53.16 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=28.8
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcc
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTD 70 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D 70 (807)
+++.|.+++ -|+|.+||||+.. + ..+.+.++ .|++|.++.|-.
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~-~---~~~~~lq~-~g~~~~i~iaD~ 46 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVP-I---MKLIWLQK-AGFKVIILIADL 46 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHH-H---HHHHHHHH-TTSEEEEEEEHH
T ss_pred CCcEEEEeE-CCCCcccchHHHH-H---HHHHHHHh-cCCccceEecch
Confidence 455666664 6779999998763 2 44555555 899998887543
No 148
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=87.05 E-value=1.2 Score=50.56 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=43.8
Q ss_pred CcEEEEcCCCCCCCc-ccchHhhhhhhHHHHHHHHHHHCCCceeEecCc-ch-hhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003611 22 RNILITSALPYVNNV-PHLGNIIGSVLSADVFARFCRLRGYNAIYICGT-DE-YGTATETKAMEDNCSPKEICDKYHVIH 98 (807)
Q Consensus 22 ~~~~it~~~Py~ng~-lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~-D~-hG~~i~~~A~~~g~~p~e~~~~~~~~~ 98 (807)
+++.|.+++ -|+|+ +||||+. + + ..+.+++ ..|++++++.|- +- .|+|.-....+...+. +.+..+...+
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv-~-l--~~l~~lQ-~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~-e~i~~n~~~i 104 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLV-P-L--LKLRRFQ-DAGHKPIALIGGFTGMIGDPSGKSETRKLLTR-EQVAENAETI 104 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHH-H-H--HHHHHHH-HCCCcEEEEEcCceeEcCCCCCCchhhccCCH-HHHHHHHHHH
Confidence 455666775 78895 9999977 3 2 4455555 479998777643 11 1323211122233443 3344555556
Q ss_pred HHHHhhcCccc
Q 003611 99 KDVYKWFDISF 109 (807)
Q Consensus 99 ~~~~~~lgI~~ 109 (807)
++++ +.++.+
T Consensus 105 ~~ql-~~~ld~ 114 (408)
T PRK05912 105 KEQL-FKFLDF 114 (408)
T ss_pred HHHH-HHhcCc
Confidence 6665 445544
No 149
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=85.43 E-value=0.61 Score=44.99 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=61.8
Q ss_pred HHHHHHHCCCceeEecCcchhhHHHHHHHHHcCC---C-HHHHHHHHHHHHHHHHhhcCcccc-cccCCCChhHHHHHHH
Q 003611 52 FARFCRLRGYNAIYICGTDEYGTATETKAMEDNC---S-PKEICDKYHVIHKDVYKWFDISFD-NFGRTSTPQQTEACQA 126 (807)
Q Consensus 52 ~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~---~-p~e~~~~~~~~~~~~~~~lgI~~D-~f~rT~~~~~~~~v~~ 126 (807)
++||+|+.||||.+..+.++ ..|...|.++|. | -.++. ++.....- .+..+. ...+...+
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D--~~il~~A~~e~RillTrd~~l~-----------~~~~~~~~~~li~~~--~~~~QL~e 76 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDD--DEILELAREEGRILLTRDRDLL-----------KRRRVSGGVILIRSD--DPEEQLRE 76 (147)
T ss_pred HHHHHHHCCCcEEEeCCCCh--HHHHHHhhhCCeEEEECCHHHH-----------HHhhccCCEEEEcCC--CHHHHHHH
Confidence 69999999999999997654 456677777764 1 12222 22222211 233222 22344444
Q ss_pred HHHHHHhCCCeeeeeeeeeecCCCCcccc---cccccccCCCCCCCCC-CCCCcchhccCCCCCc
Q 003611 127 IFKKLLDNNWLIENTMQQPYCDTCKRFLA---DRLVEGTCPFEGCNYE-SARGDQCENCGKLLNA 187 (807)
Q Consensus 127 ~f~~L~~~G~iy~~~~~~~y~~~~~~~l~---d~~v~g~cp~~~c~~~-~~~g~~ce~cG~~l~~ 187 (807)
++.++ |.-.......--|+.|+.-|- ...|.+..|. --.. ...--+|..||+.+..
T Consensus 77 v~~~~---~l~~~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~--~v~~~~~~f~~C~~C~kiyW~ 136 (147)
T PF01927_consen 77 VLERF---GLKLRLDPIFSRCPKCNGPLRPVSKEEVKDRVPP--YVYETYDEFWRCPGCGKIYWE 136 (147)
T ss_pred HHHHc---CCccccCCCCCccCCCCcEeeechhhccccccCc--cccccCCeEEECCCCCCEecc
Confidence 44443 333322222345888887653 3345555554 1110 0113478999998876
No 150
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=84.94 E-value=1.7 Score=34.09 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.6
Q ss_pred HHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Q 003611 459 YLEAM-EKVKLKQGLKTAMSISSEGNAYLQ 487 (807)
Q Consensus 459 ~~~~~-e~~~~~~al~~i~~l~~~~N~yi~ 487 (807)
+.++| ++|+++.|+..++++++.+|.+++
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l~ 31 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLLL 31 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHhh
Confidence 45667 689999999999999999999885
No 151
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=84.83 E-value=0.13 Score=60.75 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=47.0
Q ss_pred EEeCCC-CCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeeeccccc
Q 003611 659 VQKHPD-ADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVA 711 (807)
Q Consensus 659 ~~~hp~-adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~nlk~~k 711 (807)
|+..|. +.+|.-.+.|.|.+..|+|+||+..+|. +|+|+.++.+|| .||.
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~-~pr~ 659 (659)
T PTZ00385 609 CANVRELRRVIMELGQRGGENGLPTAGGRLSEWRI--TLTFAIIRFICG-TPRR 659 (659)
T ss_pred hhhchHHHHHHhceecccCCCCccchhHHHHHHHH--HHhcceeEEEeC-CCCC
Confidence 899999 9999999999999999999999999998 799999999999 8873
No 152
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=84.38 E-value=1.2 Score=47.54 Aligned_cols=67 Identities=19% Similarity=0.103 Sum_probs=41.4
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
+..+|.|+..++.. +.-.+-...+..| ..+.|.++. .+|+|||||.+|.+| ..+. -+++.++=++.+
T Consensus 154 l~~~G~DQ~~~i~~---~rd~a~r~~~~~~-~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~---dsp~~i~~Ki~~ 221 (269)
T cd00805 154 LQLGGSDQRGNITL---GRDLIRKLGYKKV-VGLTTPLLTGLDGGKMSKSEGNAIW-DPVL---DSPYDVYQKIRN 221 (269)
T ss_pred eeEecHHHHHHHHH---HHHHHHHhCCCCc-EEEeeccccCCCCCcccCCCCCccc-ccCC---CCHHHHHHHHHc
Confidence 78999999654432 1111111122222 345566664 899999999999997 4443 356777777765
No 153
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=82.57 E-value=3.3 Score=46.48 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003611 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (807)
Q Consensus 22 ~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (807)
+++.|.+++ -|+|.+||||. ++..--+..+ ...|++|+|+.+ |-|..-. ...|.++.++ ......+...
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~g---~i~~~~~~~l-q~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~i-~~~~~~~~~~ 133 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQG---ILKAINVNKL-TKAGCVFVFWVA-DWFALLN----NKMGGDLEKI-RKVGEYFIEV 133 (383)
T ss_pred CCCEEEEEE-CCCCcccccch---HhHhHHHHHH-HhCCCeEEEEEc-cceeecC----CCCCCCHHHH-HHHHHHHHHH
Confidence 444455554 67799999992 2322233444 355999877764 2232110 1223444444 4455667778
Q ss_pred HhhcCcccc
Q 003611 102 YKWFDISFD 110 (807)
Q Consensus 102 ~~~lgI~~D 110 (807)
|.++|+.++
T Consensus 134 ~~A~GlDp~ 142 (383)
T PTZ00126 134 WKAAGMDMD 142 (383)
T ss_pred HHHhCCCcc
Confidence 899999886
No 154
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.17 E-value=0.56 Score=52.79 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=37.0
Q ss_pred EEEEEeccccchhc---hHHHHhhhCC-CCcccCeEEEe-ec-eee-cCCCccccccCCccChhhhhhcCCCchhHHHHH
Q 003611 309 YQFMGKDNVPFHTV---MFPSTLLGTG-ENWTLMKTISV-TE-YLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYL 381 (807)
Q Consensus 309 ih~iGkDii~fH~i---~~pa~l~a~~-~~~~~p~~i~~-hg-~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~l 381 (807)
+-.+|.|+...+-+ +-.-|-.-.| ..++.|..++. |+ .+. ++|+|||||.+|.|...| ++|.+|--+
T Consensus 151 ~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI 224 (431)
T PRK12284 151 KVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA------PREELKKAI 224 (431)
T ss_pred EEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC------CHHHHHHHH
Confidence 56789998653322 0001111111 11345655553 22 343 789999999999996643 244555544
Q ss_pred Hh
Q 003611 382 LT 383 (807)
Q Consensus 382 l~ 383 (807)
.+
T Consensus 225 ~~ 226 (431)
T PRK12284 225 FS 226 (431)
T ss_pred hc
Confidence 44
No 155
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=81.97 E-value=0.83 Score=51.16 Aligned_cols=66 Identities=18% Similarity=0.064 Sum_probs=37.3
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-c-CC-CccccccCC-ccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-Y-ES-GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~-~G-~KMSKS~GN-~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
+.++|.|+..+|.+- --+....+.. .+..++.|.++. + +| .|||||.+| .|+..| +++.+|=-+.+
T Consensus 213 ivpvG~DQ~~~~~La-Rdia~~~~~~--~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D------spe~I~kKI~k 282 (383)
T PTZ00126 213 ICQLGMDQRKVNMLA-REYCDKKKIK--KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED------SEEDVNRKIKK 282 (383)
T ss_pred EEEeCccHHHHHHHH-HHHHHHhCCC--CCceeecccccccCCCCCCCCCcCCCCCeecCCC------CHHHHHHHHHh
Confidence 678999997766431 1222223321 122334556654 5 55 799999987 587654 24445555544
No 156
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=81.78 E-value=0.97 Score=48.55 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=32.4
Q ss_pred EEEEEeccccchhchHHHHhhhCC----CCcccCeEEEe-eceee-cCC--CccccccC-CccChhh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTG----ENWTLMKTISV-TEYLN-YES--GKFSKSKG-IGVFGND 366 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~----~~~~~p~~i~~-hg~l~-~~G--~KMSKS~G-N~I~~~d 366 (807)
+..+|.|+..++..- --+....+ ..++.|..+++ ..++. ++| .|||||.+ |.|+..|
T Consensus 140 ~vpvG~DQ~~h~~l~-Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 140 LVPVGIDQDPHLELT-RDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred EEeeccccHHHHHHH-HHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 556699996544321 11111222 11345665543 14443 565 59999999 9998765
No 157
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=81.43 E-value=2.5 Score=45.61 Aligned_cols=57 Identities=16% Similarity=0.025 Sum_probs=31.7
Q ss_pred EEEEEeccccchhchHHHHhhhCCC--CcccCeEEEeeceee-cCCC-ccccccCC-ccChhhh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGE--NWTLMKTISVTEYLN-YESG-KFSKSKGI-GVFGNDA 367 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~--~~~~p~~i~~hg~l~-~~G~-KMSKS~GN-~I~~~d~ 367 (807)
+.++|.|+...+..- --+....+. ..+.|. .+.+.++. .+|. |||||.+| .|+..|-
T Consensus 152 ~~~~G~DQ~~~~~l~-rd~a~k~~~~~~~~~p~-~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 152 LVPGGIDQRGHIELA-RDLARKFNYKEIFPKPA-GLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp EEEEEGGGHHHHHHH-HHHHHHHTHHSTSSS-E-EEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred cccccchHHHHHHHH-HHHHhhhcccccccCch-heeeccccccCCccccCccCCccEEEEecc
Confidence 789999996443220 001111111 012444 44445664 7898 99999999 8877653
No 158
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=81.08 E-value=0.96 Score=49.78 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=41.3
Q ss_pred EcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Q 003611 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFD 106 (807)
Q Consensus 27 t~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lg 106 (807)
.+++ -|+|.+||||..+. + .-.+++...|. ++ ++=.|.|..- . ...++.++. ++......++.++|
T Consensus 6 ~sG~-~PTG~~HLGn~l~~-~---~~~~~lQ~~~~-~~-i~IaD~ha~~--~----~~~~~~~i~-~~~~~~~~~~lA~G 71 (333)
T PRK12282 6 LTGD-RPTGKLHLGHYVGS-L---KNRVALQNEHE-QF-VLIADQQALT--D----NAKNPEKIR-RNILEVALDYLAVG 71 (333)
T ss_pred EEee-CCCCcchHHHHHHH-H---HHHHHHHhCCC-EE-EEEccchhHh--C----CCCCHHHHH-HHHHHHHHHHHHhC
Confidence 3443 66799999998763 3 12324444564 54 3336777321 1 134555554 44455667788899
Q ss_pred cccc
Q 003611 107 ISFD 110 (807)
Q Consensus 107 I~~D 110 (807)
+.++
T Consensus 72 ~dp~ 75 (333)
T PRK12282 72 IDPA 75 (333)
T ss_pred cChh
Confidence 9887
No 159
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.58 E-value=4.4 Score=44.70 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=47.2
Q ss_pred cCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCc
Q 003611 28 SALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDI 107 (807)
Q Consensus 28 ~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI 107 (807)
+++ -|+|.+||||..+. + --+.++++ +++|+++. .|-|-.-. ..++.++ ..+...+..++.++|+
T Consensus 6 ~G~-~PTG~lHLG~~~g~-~--~~~~~lQ~--~~~~~~~I-aD~ha~t~-------~~~~~~i-~~~~~~~~~~~lA~Gl 70 (333)
T PRK00927 6 SGI-QPTGKLHLGNYLGA-I--KNWVELQD--EYECFFCI-ADLHALTV-------PQDPEEL-RENTRELAADYLACGI 70 (333)
T ss_pred Eee-CCCccchHHhHHHH-H--HHHHHHHh--cCCeEEEE-ecHHHHhC-------CCCHHHH-HHHHHHHHHHHHeEcc
Confidence 443 67799999998863 4 22555554 47887766 34443221 1244443 4445667788889999
Q ss_pred ccc---cccCCCChhHH
Q 003611 108 SFD---NFGRTSTPQQT 121 (807)
Q Consensus 108 ~~D---~f~rT~~~~~~ 121 (807)
.++ .|..+.-+.|.
T Consensus 71 Dp~k~~if~qS~~~~~~ 87 (333)
T PRK00927 71 DPEKSTIFVQSHVPEHA 87 (333)
T ss_pred ChhheEEEEeCCCchhH
Confidence 987 34444444543
No 160
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.36 E-value=0.73 Score=51.42 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=51.2
Q ss_pred EEcCCCCCCCcccchHhhhhhhHHHHHHHHHHH-CCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 26 ITSALPYVNNVPHLGNIIGSVLSADVFARFCRL-RGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 26 it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~-~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
|.+++ -|+|.+||||..+. + ..|..+ .|++++| +=.|.|-.-+ ...++.++. .+...+..++.+
T Consensus 5 v~sGi-qPSG~~HLGnylG~-i-----k~wv~lq~~~~~~~-~IADlHAlt~------~~~d~~~ir-~~~~~~~a~~lA 69 (398)
T PRK12283 5 VLSGM-RPTGRLHLGHYHGV-L-----KNWVKLQHEYECFF-FVADWHALTT------HYETPEVIE-KNVWDMVIDWLA 69 (398)
T ss_pred EEEEe-CCCCcchHHHHHHH-H-----HHHHHHhcCCcEEE-EeecHHHHhC------CCCCHHHHH-HHHHHHHHHHHH
Confidence 44554 67899999997762 3 344443 4887654 4466664321 112554443 444567889999
Q ss_pred cCcccc---cccCCCChhHHH
Q 003611 105 FDISFD---NFGRTSTPQQTE 122 (807)
Q Consensus 105 lgI~~D---~f~rT~~~~~~~ 122 (807)
+|+.++ .|..+..++|.+
T Consensus 70 ~GlDP~k~~if~QS~v~eh~e 90 (398)
T PRK12283 70 AGVDPAQATLFIQSKVPEHAE 90 (398)
T ss_pred cCCCccceEEEECCCchHHHH
Confidence 999986 466666777744
No 161
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=80.01 E-value=1.2 Score=49.16 Aligned_cols=54 Identities=31% Similarity=0.355 Sum_probs=33.1
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCCC--cccccc-CCccChhh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YESG--KFSKSK-GIGVFGND 366 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G~--KMSKS~-GN~I~~~d 366 (807)
+..+|.|+..++.+ ---+....+. ..|..+ .|.++. ++|. |||||. +|.|+..|
T Consensus 171 ~vpvG~DQ~~h~~l-~Rdia~~~n~--~~p~~l-~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 171 IAVGGMDQRKIHML-AREVLPKLGY--KKPVCI-HTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred EEEechhHHHHHHH-HHHhhHhcCC--CCceEE-EcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 78899999654322 1111222222 234433 355654 7876 999999 99998865
No 162
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=79.68 E-value=0.92 Score=50.55 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=38.6
Q ss_pred EEEEEeccccchhc---hHHHHhhhCCCCcccCeEEEeecee-ecCCCcccccc-CCccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSK-GIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~iGkDii~fH~i---~~pa~l~a~~~~~~~p~~i~~hg~l-~~~G~KMSKS~-GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
+..+|.|+..++.+ +-+.+-...|. +.|..++ |-++ -++|.|||||. +|.|...| +++.+|=-+.+
T Consensus 206 lvPvG~DQ~~h~~ltRdiA~r~n~~~gf--~~P~~l~-~~~lpgL~G~KMSkS~~~s~I~L~D------~p~~I~kKI~k 276 (368)
T PRK12285 206 LVPVGIDQDPHIRLTRDIAERLHGGYGF--IKPSSTY-HKFMPGLTGGKMSSSKPESAIYLTD------DPETVKKKIMK 276 (368)
T ss_pred EEEeccchHHHHHHHHHHHHHHhhhcCC--CCchhHh-hhcccCCCCCcCCCCCCCCeeeccC------CHHHHHHHHHh
Confidence 67899999654432 11222112243 4565544 4565 48899999998 67887754 23445544444
No 163
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=78.24 E-value=7.6 Score=42.79 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=32.1
Q ss_pred EEEEEeccccchhch---HHHHhhhCCCC-cccCeEEEee-ceee-cCC-CccccccCCccChhh
Q 003611 309 YQFMGKDNVPFHTVM---FPSTLLGTGEN-WTLMKTISVT-EYLN-YES-GKFSKSKGIGVFGND 366 (807)
Q Consensus 309 ih~iGkDii~fH~i~---~pa~l~a~~~~-~~~p~~i~~h-g~l~-~~G-~KMSKS~GN~I~~~d 366 (807)
+..+|.|+..+|.+. -+-+-.-.+-+ ...|..++.+ .++. ++| .|||||.+|.|+..|
T Consensus 145 ~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 145 LVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred EEEeccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 788999997655431 11111111111 1234444433 3343 576 799999999986654
No 164
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=77.89 E-value=1.2 Score=49.15 Aligned_cols=69 Identities=13% Similarity=0.005 Sum_probs=37.6
Q ss_pred EEEEEeccccchhc---hHHHHhhhCCCCcccCeEEEee--ceee-cCCC--ccccccC---CccChhhhhhcCCCchhH
Q 003611 309 YQFMGKDNVPFHTV---MFPSTLLGTGENWTLMKTISVT--EYLN-YESG--KFSKSKG---IGVFGNDAKDTNIPVEVW 377 (807)
Q Consensus 309 ih~iGkDii~fH~i---~~pa~l~a~~~~~~~p~~i~~h--g~l~-~~G~--KMSKS~G---N~I~~~d~l~~~~~~D~l 377 (807)
+..+|.|+..++-+ +-+-+-.-.+.-++.|..++.. ..+. ++|. |||||.+ |.|...| +++.+
T Consensus 141 ivpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D------~~~~I 214 (333)
T PRK00927 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD------DPKTI 214 (333)
T ss_pred EEeeccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC------CHHHH
Confidence 78899999755432 1111111111112356655532 2333 6776 9999999 8887754 24445
Q ss_pred HHHHHh
Q 003611 378 RYYLLT 383 (807)
Q Consensus 378 R~~ll~ 383 (807)
+=-+.+
T Consensus 215 ~~KI~~ 220 (333)
T PRK00927 215 AKKIKK 220 (333)
T ss_pred HHHHHh
Confidence 544544
No 165
>PRK04023 DNA polymerase II large subunit; Validated
Probab=77.74 E-value=4 Score=50.01 Aligned_cols=76 Identities=22% Similarity=0.514 Sum_probs=51.1
Q ss_pred CCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEEeeecceeEe
Q 003611 134 NNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLD 213 (807)
Q Consensus 134 ~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~ 213 (807)
+|.| .-+....+|++|+... ..-.||. ||....-...|..||....+ ..|+.||..+... ...-++
T Consensus 617 ~g~~-eVEVg~RfCpsCG~~t----~~frCP~--CG~~Te~i~fCP~CG~~~~~-----y~CPKCG~El~~~--s~~~i~ 682 (1121)
T PRK04023 617 KGTI-EVEIGRRKCPSCGKET----FYRRCPF--CGTHTEPVYRCPRCGIEVEE-----DECEKCGREPTPY--SKRKID 682 (1121)
T ss_pred CCce-eecccCccCCCCCCcC----CcccCCC--CCCCCCcceeCccccCcCCC-----CcCCCCCCCCCcc--ceEEec
Confidence 5655 4555677999999875 4468999 99876556789999987654 4599999876532 233345
Q ss_pred ccchHHHHHH
Q 003611 214 LPALRNKLEE 223 (807)
Q Consensus 214 l~~~~~~l~~ 223 (807)
+..+-.+..+
T Consensus 683 l~~~~~~A~~ 692 (1121)
T PRK04023 683 LKELYDRALE 692 (1121)
T ss_pred HHHHHHHHHH
Confidence 5444333333
No 166
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=77.11 E-value=33 Score=41.52 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 003611 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (807)
Q Consensus 404 ~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N 483 (807)
.+-...+...++|+..++.+... ...+.+.. ..-..+.++.|.+.+..+...+..++..-++..++..+..+....+
T Consensus 565 ~~~~~~l~~~~kRv~NIl~k~~~-~~~~~v~~--~l~~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id 641 (682)
T PRK01233 565 LPEFKALAAANKRVSNILKKAEG-KVSGEVDP--ALFEEPAEKALYAALEELKPKVEPALAAGDYQAALEALAALRPPVD 641 (682)
T ss_pred ChhHHHHHHHHHHHHHHHhcccc-ccCCccCh--hHcCCHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhhhhHHH
Confidence 34456677788999998876211 01112211 1223456788889888888888888888899999999999999999
Q ss_pred HHHHhhcchhhccCChHHHHHHHHHH
Q 003611 484 AYLQESQFWKLYKEDQPSCSIVMRTS 509 (807)
Q Consensus 484 ~yi~~~~pw~l~k~~~~~~~~~l~~~ 509 (807)
.||+..- +..+|++-+..-+.++
T Consensus 642 ~FFD~Vm---Vm~~d~~iR~NRL~LL 664 (682)
T PRK01233 642 AFFDNVM---VMAEDEALRANRLALL 664 (682)
T ss_pred HHhCCCe---eeCCCHHHHHHHHHHH
Confidence 9998753 2234444334444433
No 167
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.36 E-value=1.1 Score=48.32 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=21.1
Q ss_pred cccCeEEEee-ceee-cCC-CccccccCC-ccChhh
Q 003611 335 WTLMKTISVT-EYLN-YES-GKFSKSKGI-GVFGND 366 (807)
Q Consensus 335 ~~~p~~i~~h-g~l~-~~G-~KMSKS~GN-~I~~~d 366 (807)
+++|..++.- .++. ++| .|||||.+| +|...|
T Consensus 177 f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 177 FPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred cCCccccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 3456544422 2665 788 899999999 775543
No 168
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=75.05 E-value=5.6 Score=44.61 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=27.2
Q ss_pred cEEEEcCCCCCCC-cccchHhhhhhhHHHHHHHHHHHCCCceeEecC
Q 003611 23 NILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68 (807)
Q Consensus 23 ~~~it~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G 68 (807)
++.+.++. -|+| .+||||+.. + -.++|+++ .|++++++.|
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~--l--~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP--L--LKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH--H--HHHHHHHH-CCCcEEEEEe
Confidence 34455664 7889 899999763 2 33555554 7999887764
No 169
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.34 E-value=3.4 Score=46.39 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCCCC-cccchHhhhhhhHHHHHHHHHHHCCCceeEecCc--chhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 003611 21 KRNILITSALPYVNN-VPHLGNIIGSVLSADVFARFCRLRGYNAIYICGT--DEYGTATETKAMEDNCSPKEICDKYHVI 97 (807)
Q Consensus 21 ~~~~~it~~~Py~ng-~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~--D~hG~~i~~~A~~~g~~p~e~~~~~~~~ 97 (807)
+-++|+- .=|+| .+||||+.. + -.++| +...|++|.++.|- --.|+|.-....+.-.+ .+.+..+.+.
T Consensus 32 ~~~~Y~G---fDPTa~slHlGhlv~--l--~kL~~-fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~-~e~v~~n~~~ 102 (401)
T COG0162 32 PLRVYIG---FDPTAPSLHLGHLVP--L--MKLRR-FQDAGHKPIVLIGDATAMIGDPSGKSEERKLLT-RETVLENAET 102 (401)
T ss_pred CceEEEe---eCCCCCccchhhHHH--H--HHHHH-HHHCCCeEEEEecccceecCCCCCCHHHHhhcc-HHHHHHHHHH
Confidence 3345543 35678 899999774 2 33444 45679999888763 33577752222222222 3344444444
Q ss_pred HHHHH
Q 003611 98 HKDVY 102 (807)
Q Consensus 98 ~~~~~ 102 (807)
+++++
T Consensus 103 i~~ql 107 (401)
T COG0162 103 IKKQL 107 (401)
T ss_pred HHHHh
Confidence 44443
No 170
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=72.45 E-value=3.1 Score=46.66 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.6
Q ss_pred cCCCccccccCCccChhh
Q 003611 349 YESGKFSKSKGIGVFGND 366 (807)
Q Consensus 349 ~~G~KMSKS~GN~I~~~d 366 (807)
.+|.|||||.||.||.++
T Consensus 217 ~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 217 ADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred CCCCCccCCCCCcccCCc
Confidence 679999999999998754
No 171
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=71.62 E-value=47 Score=39.75 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHH
Q 003611 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAE 450 (807)
Q Consensus 371 ~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~ 450 (807)
+|..|.++=-|..+...--|+..+.+.+....+.+-...+-..++|+..++.+... ...+.+.. ..-..+.++.|.+
T Consensus 541 g~~~dii~AVL~~~~~~l~~i~~r~~al~~f~~~~~~~~l~~a~kRv~nIl~k~~~-~~~~~v~~--~Lf~~~~E~~L~~ 617 (691)
T COG0751 541 GYRKDIIDAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEK-KLSGTVDP--SLFEEDAEKALFE 617 (691)
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhccc-ccCCccCh--HHhcCHHHHHHHH
Confidence 45556666555442211224444455555544444445566788999988876211 11122211 1223456788999
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Q 003611 451 KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQES 489 (807)
Q Consensus 451 ~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~ 489 (807)
.+..+...+..++..-++..|+..+.++..-...||+..
T Consensus 618 a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pId~FFd~V 656 (691)
T COG0751 618 ALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNV 656 (691)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhHHHHhcCc
Confidence 999999999999999999999999999988899999875
No 172
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=69.61 E-value=63 Score=39.23 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=71.9
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHH
Q 003611 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAE 450 (807)
Q Consensus 371 ~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~ 450 (807)
+|+.|.++--+......--|+.-..+.+.+....+-...+...++|+..++.+..+ .+.+.+.. ..-..+.++.|.+
T Consensus 542 g~~~dvi~AVl~~~~~~~~~~~~r~~aL~~~~~~~~~~~l~~a~kRv~NIl~k~~~-~~~~~v~~--~l~~~~~E~~L~~ 618 (691)
T TIGR00211 542 GIDVDVIQAVLARRETDPADFDARAQALSHFRDLPKAEALAAANKRVANILKKGNP-VLSSEIQA--NLFKEPKEKALFE 618 (691)
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHhcccc-cccCccCh--hHcCCHHHHHHHH
Confidence 46666666555321100011111233333434445566777888999998877211 01111111 1223456788888
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Q 003611 451 KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQ 490 (807)
Q Consensus 451 ~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~ 490 (807)
.+..+...+...+.+-++..++..+..|....+.||+..-
T Consensus 619 ~~~~~~~~~~~~~~~~~y~~~l~~l~~L~~~Id~FFD~Vm 658 (691)
T TIGR00211 619 AVLAIKMNAQESFESGDYETALEALAELRAPVDEFFDSVM 658 (691)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHhhhHHHHHhCCCE
Confidence 8888877778778777999999999999999999998753
No 173
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=68.60 E-value=14 Score=41.36 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=27.5
Q ss_pred ccCeEEEe-eceee-cCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003611 336 TLMKTISV-TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 336 ~~p~~i~~-hg~l~-~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
+.|..++. |.++. ++|+|||||.+|.|...| ++|.+|=-+.+
T Consensus 245 ~~P~~~~~~~~~I~gLdg~KMSKS~~n~I~L~D------s~~~I~kKI~~ 288 (398)
T PRK12283 245 PEPQALLTEASKMPGLDGQKMSKSYGNTIGLRE------DPESVTKKIRT 288 (398)
T ss_pred CCCcccccCCCcccCCCCCcCCCCCCCeeeCcC------CHHHHHHHHHh
Confidence 35555443 34554 789999999999987644 34556655554
No 174
>PLN02486 aminoacyl-tRNA ligase
Probab=67.37 E-value=2.3 Score=47.68 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=34.9
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCeEEEeeceee-cCC--CccccccCC-ccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLN-YES--GKFSKSKGI-GVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~hg~l~-~~G--~KMSKS~GN-~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
+--+|.|+..++-+- --+....+. ..| .+++|.++. +.| .|||||.+| .|+..| +++.++=.+.+
T Consensus 222 lVPvG~DQd~~~~lt-Rdia~r~~~--~kp-~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D------~p~~i~~KI~k 290 (383)
T PLN02486 222 LIPCAIDQDPYFRMT-RDVAPRLGY--YKP-ALIESRFFPALQGESGKMSASDPNSAIYVTD------TPKEIKNKINK 290 (383)
T ss_pred eeecccchHHHHHHH-HHHHHHhCC--CCc-ceeccccccCCCCCCCcCcCcCCCCeeeccC------CHHHHHHHHhc
Confidence 445688886543321 111122222 234 334455654 666 699999988 687765 24455555543
No 175
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.13 E-value=2.3 Score=47.78 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=30.8
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCeEEEee-ceee-cCCCccccccCCccChh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVT-EYLN-YESGKFSKSKGIGVFGN 365 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~~i~~h-g~l~-~~G~KMSKS~GN~I~~~ 365 (807)
++++|.|+-+.|..- .-++...|. .+.+..| -.|+ .+|.|||||.||.+|..
T Consensus 183 lq~GG~DQ~~ni~~g-rdl~rr~g~----~~~~~lt~PLL~~ldG~KmgKs~~~a~~~~ 236 (401)
T COG0162 183 LQLGGSDQWGNILAG-RDLIRRLGQ----KKVVGLTTPLLTGLDGKKMGKSEGGAVWLD 236 (401)
T ss_pred hhcCChHHHHHHHHH-HHHHHHhCC----CCeEEEEeccccCCCCCcccccCCCceEcc
Confidence 799999985544321 011122232 2334444 4444 79999999999966543
No 176
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=65.28 E-value=21 Score=43.08 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCcccchHhhhhhhHHHHHHHH-HHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003611 23 NILITSALPYVNNVPHLGNIIGSVLSADVFARF-CRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDV 101 (807)
Q Consensus 23 ~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~-~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 101 (807)
++.+.+++ -|+|.+||||. ++ . .+..+ ++..|++|+|..+ |-|..- -.+.|.+...+.. ....+..+
T Consensus 32 ~~rv~sGi-~PTG~lHLGng---~~-~-aik~~~~~q~g~~~~~lIA-D~HAlt----~~~~~~~l~~i~~-~~~~~~~~ 99 (682)
T PTZ00348 32 LIRCYDGF-EPSGRMHIAQG---IF-K-AVNVNKCTQAGCEFVFWVA-DWFALM----NDKVGGELEKIRI-VGRYLIEV 99 (682)
T ss_pred CCEEEEee-CCCCcCeeccH---HH-H-HHHHHHHHhCCCeEEEEEc-chhhhc----CCCCCCCHHHHHH-HHHHHHHH
Confidence 44456664 78899999993 22 2 22222 2356999876643 333221 1223334444332 23456678
Q ss_pred HhhcCcccc--cccCCC
Q 003611 102 YKWFDISFD--NFGRTS 116 (807)
Q Consensus 102 ~~~lgI~~D--~f~rT~ 116 (807)
|.++|+.++ .|++.+
T Consensus 100 ~lA~GlDpeK~~~~~qS 116 (682)
T PTZ00348 100 WKAAGMDMDKVLFLWSS 116 (682)
T ss_pred HHHcCCCccceEEEECc
Confidence 899999987 355544
No 177
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=61.39 E-value=94 Score=39.18 Aligned_cols=128 Identities=15% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCCchhHHHHHHhcCCCCCCccccHHHHHHHHhHHHHHHHHHHHHHHHHhHhCCCCCCCCCcCCCCCCCCChHHHHHHHH
Q 003611 371 NIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAE 450 (807)
Q Consensus 371 ~~~~D~lR~~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~ 450 (807)
++..|.++--+......--|+.-..+.+.+..+.+-...+...++|+..++.+. -+..+. . ..-..+.++.|.+
T Consensus 857 G~~~dvI~AVl~~~~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~----~~~~vd-~-~Lf~~~~E~~L~~ 930 (1000)
T PRK14908 857 GFDKDEIAAVLPDACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASL----SFSVTD-A-SLLLEPAELNLKQ 930 (1000)
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhc----CCCccC-h-hhcCCHHHHHHHH
Confidence 577777776664311101122223334444444455667888899999988772 111111 1 1223456778888
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcchhhccCChHHHHHHHHHH
Q 003611 451 KVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTS 509 (807)
Q Consensus 451 ~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pw~l~k~~~~~~~~~l~~~ 509 (807)
.+..+...+... +-++..++..+..|....+.||+..- +..+|++....-+.++
T Consensus 931 a~~~~~~~~~~~--~~dy~~al~~La~L~~~Id~FFD~Vm---Vm~eD~~iR~NRLaLL 984 (1000)
T PRK14908 931 ALDAFREELTEL--PIDLKDYVAAAAELPQAVNTFFDEVL---VMADDEAIRNARLGLL 984 (1000)
T ss_pred HHHHHHHHHHHh--hhhHHHHHHHHHhhhhHHHHHhCCCE---eeCCCHHHHHHHHHHH
Confidence 777765555554 45889999999999999999998753 2234444344444433
No 178
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=57.32 E-value=7.4 Score=38.81 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=18.2
Q ss_pred cchhccCCCCCccccC--CCccccCCCceEEe
Q 003611 176 DQCENCGKLLNATDLK--DPKCKVCRNAPQIR 205 (807)
Q Consensus 176 ~~ce~cG~~l~~~el~--~p~c~~~g~~~~~~ 205 (807)
-.|+.||+-++-.+.. +-.|+.||.+++..
T Consensus 118 Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 118 FFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEY 149 (178)
T ss_pred EECCCCCcEEeHHHHhhcCCcCCCCCCCCeec
Confidence 4566666654433322 46788899888753
No 179
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=55.88 E-value=7.5 Score=25.57 Aligned_cols=8 Identities=50% Similarity=1.265 Sum_probs=3.6
Q ss_pred cchhccCC
Q 003611 176 DQCENCGK 183 (807)
Q Consensus 176 ~~ce~cG~ 183 (807)
.+|..||.
T Consensus 17 ~fC~~CG~ 24 (26)
T PF13248_consen 17 KFCPNCGA 24 (26)
T ss_pred ccChhhCC
Confidence 34444443
No 180
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=55.60 E-value=7.6 Score=29.31 Aligned_cols=29 Identities=17% Similarity=0.626 Sum_probs=17.1
Q ss_pred hhccCCCCCccccC-CCccccCCCceEEee
Q 003611 178 CENCGKLLNATDLK-DPKCKVCRNAPQIRD 206 (807)
Q Consensus 178 ce~cG~~l~~~el~-~p~c~~~g~~~~~~~ 206 (807)
|.+||..+...+.. ..+|+.||++..+..
T Consensus 6 C~~CG~~~~~~~~~~~~~Cp~CG~~~~~~~ 35 (46)
T PRK00398 6 CARCGREVELDEYGTGVRCPYCGYRILFKE 35 (46)
T ss_pred CCCCCCEEEECCCCCceECCCCCCeEEEcc
Confidence 55566655433322 567888888776543
No 181
>PF12773 DZR: Double zinc ribbon
Probab=54.83 E-value=12 Score=28.71 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=17.1
Q ss_pred CCcchhccCCCCCccccCCCccccCCCce
Q 003611 174 RGDQCENCGKLLNATDLKDPKCKVCRNAP 202 (807)
Q Consensus 174 ~g~~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (807)
...+|..||..|........+|..||..+
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAEN 39 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCCC
Confidence 34667777777663333344677777653
No 182
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=53.36 E-value=20 Score=34.76 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=29.6
Q ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHH
Q 003611 454 KYVEQYLEAM-EKVKLKQGLKTAMSISSEGNAYLQ 487 (807)
Q Consensus 454 ~~~~~~~~~~-e~~~~~~al~~i~~l~~~~N~yi~ 487 (807)
.+..++.++| ++|+++.|+..|+++++.+|.+++
T Consensus 33 ~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~ 67 (156)
T cd07963 33 PFAERFIAAMDDDFNTPEALAVLFELAREINRLKK 67 (156)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 3457788899 589999999999999999999875
No 183
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=52.77 E-value=12 Score=34.30 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=32.0
Q ss_pred hhccCCCCCccccCCCccccCCCceEEeeecceeEeccc-hHHHHHHHHHc
Q 003611 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPA-LRNKLEEYINN 227 (807)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~-~~~~l~~~~~~ 227 (807)
|..||..+..+. .+|..|++.++-.=+-.||..|+. -++.++.++..
T Consensus 1 CPvCg~~l~vt~---l~C~~C~t~i~G~F~l~~~~~L~~E~~~Fi~~Fi~~ 48 (113)
T PF09862_consen 1 CPVCGGELVVTR---LKCPSCGTEIEGEFELPWFARLSPEQLEFIKLFIKN 48 (113)
T ss_pred CCCCCCceEEEE---EEcCCCCCEEEeeeccchhhcCCHHHHHHHHHHHHh
Confidence 445666555444 368999999988878889999864 34455555554
No 184
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=52.45 E-value=7.9 Score=46.55 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=30.3
Q ss_pred EEEEEeccccchhchHHHHhhhCCCCcccCe-EEEeeceee-cC-C-Ccccccc-CCccChhh
Q 003611 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMK-TISVTEYLN-YE-S-GKFSKSK-GIGVFGND 366 (807)
Q Consensus 309 ih~iGkDii~fH~i~~pa~l~a~~~~~~~p~-~i~~hg~l~-~~-G-~KMSKS~-GN~I~~~d 366 (807)
+..+|.|+..+|-+- --+....|. .++ .++.|.++. ++ | .|||||. +|.|+..|
T Consensus 178 ivpvG~DQ~qh~eLa-Rdia~~~g~---~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 178 ICQLGLDQRKVNMLA-REYCDLIGR---KLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred EEEeCccHHHHHHHH-HHHHHHhCC---CCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 577999997665431 111122231 122 233444443 54 4 6999999 68997755
No 185
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=49.92 E-value=12 Score=24.03 Aligned_cols=8 Identities=50% Similarity=1.286 Sum_probs=3.8
Q ss_pred cchhccCC
Q 003611 176 DQCENCGK 183 (807)
Q Consensus 176 ~~ce~cG~ 183 (807)
.+|..||.
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555554
No 186
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=48.57 E-value=14 Score=27.84 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=20.8
Q ss_pred chhccCCCCCccccCCCccccCCCceEEeee
Q 003611 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDT 207 (807)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~ 207 (807)
.|..||..++......-+|+.||..+.++.-
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~rIlyK~R 34 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGYRILYKKR 34 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCceEEEEeC
Confidence 3566777665544444679999999887653
No 187
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=46.15 E-value=15 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.739 Sum_probs=11.6
Q ss_pred chhccCCCCCccccCCCccccCCCce
Q 003611 177 QCENCGKLLNATDLKDPKCKVCRNAP 202 (807)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (807)
.|..||..+.+ ...+|..||+++
T Consensus 29 ~Cp~CG~~~~~---~~~fC~~CG~~~ 51 (645)
T PRK14559 29 PCPQCGTEVPV---DEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCCCCc---ccccccccCCcc
Confidence 45555554332 124566666554
No 188
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=45.19 E-value=15 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.665 Sum_probs=21.1
Q ss_pred chhccCCCCCc-cccCCCccccCCCceEEeee
Q 003611 177 QCENCGKLLNA-TDLKDPKCKVCRNAPQIRDT 207 (807)
Q Consensus 177 ~ce~cG~~l~~-~el~~p~c~~~g~~~~~~~~ 207 (807)
.|-.||+.++. .....-+|+.||..+.++..
T Consensus 8 ~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R 39 (49)
T COG1996 8 KCARCGREVELDQETRGIRCPYCGSRILVKER 39 (49)
T ss_pred EhhhcCCeeehhhccCceeCCCCCcEEEEecc
Confidence 57778887752 23345689999998876543
No 189
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.43 E-value=26 Score=37.15 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEec-Ccch
Q 003611 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYIC-GTDE 71 (807)
Q Consensus 20 ~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~-G~D~ 71 (807)
..++||+.|+-=--++.+||||+. +++ +..|+... ++|-+|. =||+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHli-PFi----ftKwlQe~-F~vpLVIqlTDD 128 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLI-PFI----FTKWLQDV-FDVPLVIQLTDD 128 (397)
T ss_pred cCCceEEEeCCCCCccccccccch-hHH----HHHHHHHH-hCCceEEEeccc
Confidence 356788888765668899999987 465 78888765 5665543 3444
No 190
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=43.91 E-value=7.6 Score=46.89 Aligned_cols=55 Identities=20% Similarity=0.498 Sum_probs=0.0
Q ss_pred eeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCceEE
Q 003611 139 ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQI 204 (807)
Q Consensus 139 ~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~~~ 204 (807)
.-+.....|+.|+..-. .-.||. ||.....-..|..||..+.+ ..|.+||..+..
T Consensus 650 ~vei~~r~Cp~Cg~~t~----~~~Cp~--CG~~T~~~~~Cp~C~~~~~~-----~~C~~C~~~~~~ 704 (900)
T PF03833_consen 650 EVEIGRRRCPKCGKETF----YNRCPE--CGSHTEPVYVCPDCGIEVEE-----DECPKCGRETTS 704 (900)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEeeecccCcccCCcch----hhcCcc--cCCccccceeccccccccCc-----cccccccccCcc
Confidence 33445567988875422 237888 98876666789999986654 379999977553
No 191
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=43.58 E-value=79 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.7
Q ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 003611 455 YVEQYLEAM-EKVKLKQGLKTAMSISSEG 482 (807)
Q Consensus 455 ~~~~~~~~~-e~~~~~~al~~i~~l~~~~ 482 (807)
+.+++.++| ++|+++.|+..++++++.+
T Consensus 29 ~~~~F~~AL~DDLNTp~Ala~L~~l~k~i 57 (81)
T cd07955 29 LVARLREALADDLDTPKALAALDAWAREA 57 (81)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 456788888 6899999999999999764
No 192
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.30 E-value=70 Score=30.61 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=46.5
Q ss_pred chHhhhhhhHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCCh
Q 003611 39 LGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP 118 (807)
Q Consensus 39 iGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~ 118 (807)
=||-++ +.+++|.++..|++|.+......-... ...|.++ +-.-.+| ...+-
T Consensus 23 DgHd~g----akvia~~l~d~GfeVi~~g~~~tp~e~-v~aA~~~-----------------dv~vIgv------Ssl~g 74 (143)
T COG2185 23 DGHDRG----AKVIARALADAGFEVINLGLFQTPEEA-VRAAVEE-----------------DVDVIGV------SSLDG 74 (143)
T ss_pred cccccc----hHHHHHHHHhCCceEEecCCcCCHHHH-HHHHHhc-----------------CCCEEEE------Eeccc
Confidence 488876 588999999999999997766553222 2222222 1122222 23455
Q ss_pred hHHHHHHHHHHHHHhCCC
Q 003611 119 QQTEACQAIFKKLLDNNW 136 (807)
Q Consensus 119 ~~~~~v~~~f~~L~~~G~ 136 (807)
.|...+..+.+.|.++|.
T Consensus 75 ~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 75 GHLTLVPGLVEALREAGV 92 (143)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 788999999999999875
No 193
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=40.28 E-value=18 Score=45.76 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=27.3
Q ss_pred eeeeEEEEEEEEEEeCCCCCceEEEEEEcCC
Q 003611 647 ARLDIRVGKITKVQKHPDADALYVEEIDVGE 677 (807)
Q Consensus 647 ~~~~~~vg~i~~~~~hp~adkl~~~~vd~G~ 677 (807)
....++--+|..|.+|+..++|+.++...|.
T Consensus 975 enGklv~~kVt~V~Khrapd~LirIkt~~GR 1005 (1337)
T PRK14714 975 ENGKVVLTDITSVSKHPAPDHLIRFETERGR 1005 (1337)
T ss_pred CCCcEEEeeeeeEEeccCCCcEEEEEecCCc
Confidence 4567889999999999999999999998884
No 194
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.86 E-value=1.1e+02 Score=28.81 Aligned_cols=65 Identities=14% Similarity=-0.058 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccccc-ccCCCChhHHHHHH
Q 003611 47 LSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDN-FGRTSTPQQTEACQ 125 (807)
Q Consensus 47 l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~-f~rT~~~~~~~~v~ 125 (807)
+.+++++++++..||+|....+...-. .+..+|.+.+ .|. -...++..|...+.
T Consensus 17 ~g~~iv~~~l~~~GfeVi~lg~~~s~e-~~v~aa~e~~------------------------adii~iSsl~~~~~~~~~ 71 (132)
T TIGR00640 17 RGAKVIATAYADLGFDVDVGPLFQTPE-EIARQAVEAD------------------------VHVVGVSSLAGGHLTLVP 71 (132)
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCHH-HHHHHHHHcC------------------------CCEEEEcCchhhhHHHHH
Confidence 357999999999999999876543322 2333333322 221 12334456788888
Q ss_pred HHHHHHHhCCC
Q 003611 126 AIFKKLLDNNW 136 (807)
Q Consensus 126 ~~f~~L~~~G~ 136 (807)
.+...|.++|.
T Consensus 72 ~~~~~L~~~g~ 82 (132)
T TIGR00640 72 ALRKELDKLGR 82 (132)
T ss_pred HHHHHHHhcCC
Confidence 88888888774
No 195
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.91 E-value=1.9e+02 Score=30.94 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=54.2
Q ss_pred EcCCCCCCCcccchHhhhhhhHHHHHHHHHHHC--CCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 003611 27 TSALPYVNNVPHLGNIIGSVLSADVFARFCRLR--GYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW 104 (807)
Q Consensus 27 t~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~--G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 104 (807)
.+++ -|+|.+|||+-.|+ | -.+.+.+... |-.|+| +=.|-|-.- ...+|.++ .+..-.+...+-+
T Consensus 17 fSGI-QPTG~~HLGNYLGa-i--~~Wv~LQ~~~d~~~~~~f-~vvDlHaIT-------vp~dp~~l-rq~~~dm~A~lLA 83 (347)
T KOG2713|consen 17 FSGI-QPTGIPHLGNYLGA-I--KPWVQLQNEYDKNILVLF-SVVDLHAIT-------VPQDPAEL-RQATHDMAASLLA 83 (347)
T ss_pred Eecc-CCCCCchhhhhhhh-h--hHHHHHHHHhcCCceEEE-EEeeceeec-------CCCChHHH-HHHHHHHHHHHHH
Confidence 3554 67799999999985 4 4455555444 444444 335666332 24455533 3334455566778
Q ss_pred cCcccc---cccCCCChhHHHHHHHHHH
Q 003611 105 FDISFD---NFGRTSTPQQTEACQAIFK 129 (807)
Q Consensus 105 lgI~~D---~f~rT~~~~~~~~v~~~f~ 129 (807)
.||.+. .|+...-|.|.+.. |+..
T Consensus 84 cGIdp~Ks~lF~QS~Vpqh~el~-WlLs 110 (347)
T KOG2713|consen 84 CGIDPEKSSLFVQSDVPQHAELS-WLLS 110 (347)
T ss_pred hccCcccceeeeeccchHHHHHH-HHHH
Confidence 899886 57777778887653 4443
No 196
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=37.17 E-value=29 Score=41.75 Aligned_cols=36 Identities=31% Similarity=0.781 Sum_probs=21.3
Q ss_pred eecCCCCcccccccccccCCCCCCCCCCCC-CcchhccCCCCC
Q 003611 145 PYCDTCKRFLADRLVEGTCPFEGCNYESAR-GDQCENCGKLLN 186 (807)
Q Consensus 145 ~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~-g~~ce~cG~~l~ 186 (807)
-||+.|++-+.. ..||. ||+.... ..+|.+||..+.
T Consensus 16 kFC~~CG~~l~~----~~Cp~--CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 16 RFCQKCGTSLTH----KPCPQ--CGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred ccccccCCCCCC----CcCCC--CCCCCCcccccccccCCccc
Confidence 366666665542 35777 7765333 357777776543
No 197
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=37.02 E-value=31 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=15.7
Q ss_pred hhccCCCCCccccCCCccccCCCceEEe
Q 003611 178 CENCGKLLNATDLKDPKCKVCRNAPQIR 205 (807)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~~~~ 205 (807)
|..||..++-.....-+|..||..+.++
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~RIlyK 30 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHRILYK 30 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-SEEBE
T ss_pred CCcCCCeeEcCCCCcEECCcCCCeEEEe
Confidence 5566665543322334788899887654
No 198
>PRK14529 adenylate kinase; Provisional
Probab=36.78 E-value=1.3e+02 Score=31.09 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=68.7
Q ss_pred cCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhCCCeeeeeeeeee
Q 003611 67 CGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPY 146 (807)
Q Consensus 67 ~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y 146 (807)
.+-++.|..+..-..+-..-|.+++-............-|+-.|-|.||. ...+.++..|.+.|. .-....+.
T Consensus 40 ~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iLDGfPRt~-----~Qa~~l~~~l~~~~~--~~~~vi~l 112 (223)
T PRK14529 40 GGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLLDGFPRNK-----VQAEKLWEALQKEGM--KLDYVIEI 112 (223)
T ss_pred cCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEEeCCCCCH-----HHHHHHHHHHHhcCC--CCCEEEEE
Confidence 34456777777666555566777766554433333234567778898876 334455555666662 12223333
Q ss_pred cCCCCccccccc-ccccCCCCCCCCCCCCCcchhccCCCCCccc-----cCCCccccCCCceEEeeecceeEeccchHHH
Q 003611 147 CDTCKRFLADRL-VEGTCPFEGCNYESARGDQCENCGKLLNATD-----LKDPKCKVCRNAPQIRDTNHLFLDLPALRNK 220 (807)
Q Consensus 147 ~~~~~~~l~d~~-v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~e-----l~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~ 220 (807)
..+++ .+-+|. -...|| .||..+.... .....|..||.+.+.|..++- -+.++.+
T Consensus 113 ~~~~~-~l~~Rl~~R~~c~---------------~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~---ee~i~~R 173 (223)
T PRK14529 113 LLPRE-VAKNRIMGRRLCK---------------NDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQD---EEAINKR 173 (223)
T ss_pred ECCHH-HHHHHhhCCcccc---------------ccCCcccccccCCCcccCCcCcCcCCccccCCCCCc---HHHHHHH
Confidence 33322 122221 112344 4443221111 111257777777776665531 1356777
Q ss_pred HHHHHHc
Q 003611 221 LEEYINN 227 (807)
Q Consensus 221 l~~~~~~ 227 (807)
|..|.+.
T Consensus 174 l~~y~~~ 180 (223)
T PRK14529 174 HDIYYDT 180 (223)
T ss_pred HHHHHHc
Confidence 7777653
No 199
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=34.94 E-value=25 Score=34.74 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=18.0
Q ss_pred HhCCCeeeeeeeeeecCCCCcccc
Q 003611 132 LDNNWLIENTMQQPYCDTCKRFLA 155 (807)
Q Consensus 132 ~~~G~iy~~~~~~~y~~~~~~~l~ 155 (807)
.+++-.+.+....|||..|+-.+.
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~ 25 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLL 25 (202)
T ss_pred CcccceeecccceeehhhCCCccc
Confidence 345667788888999998876554
No 200
>PRK05580 primosome assembly protein PriA; Validated
Probab=33.48 E-value=3e+02 Score=33.60 Aligned_cols=135 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCee-----eeeeeeeecCCCCcccccccccccCCCCCCCCC-----CCCCcchhccCCCCCcccc
Q 003611 121 TEACQAIFKKLLDNNWLI-----ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYE-----SARGDQCENCGKLLNATDL 190 (807)
Q Consensus 121 ~~~v~~~f~~L~~~G~iy-----~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~-----~~~g~~ce~cG~~l~~~el 190 (807)
......+-+.|.+...+. ++.....+|..|+...- ||. |+.. ....-.|..||......+
T Consensus 353 ~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~-------C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~~~- 422 (679)
T PRK05580 353 PPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE-------CPH--CDASLTLHRFQRRLRCHHCGYQEPIPK- 422 (679)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC-------CCC--CCCceeEECCCCeEECCCCcCCCCCCC-
Q ss_pred CCCccccCCCceEEeeecceeEeccchHHHHHHHHHcC-CCCCCCC--------hHHHHHHHHHHHcCccceeeeec-cC
Q 003611 191 KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNM-SVAGSWS--------QNAIQATHAWLKEGLKVRCITRD-LK 260 (807)
Q Consensus 191 ~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~-~~~~~~~--------~~~~~~~~~~l~~gl~d~~ISR~-~~ 260 (807)
.|+.||... +.....-.+++.+.+++. +...... ....+.+.+.+.+|-.+.-|.-+ ..
T Consensus 423 ---~Cp~Cg~~~--------l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~ia 491 (679)
T PRK05580 423 ---ACPECGSTD--------LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLA 491 (679)
T ss_pred ---CCCCCcCCe--------eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhc
Q ss_pred CCCccCccccCCcEEEEEecc
Q 003611 261 WGVPVPLERFKEKVFYVWFDA 281 (807)
Q Consensus 261 WGipvP~~~~~~~viyVWfDA 281 (807)
.|+.+| +-.+=+++||
T Consensus 492 kG~d~p-----~v~lV~il~a 507 (679)
T PRK05580 492 KGHDFP-----NVTLVGVLDA 507 (679)
T ss_pred cCCCCC-----CcCEEEEEcC
No 201
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=33.17 E-value=19 Score=25.83 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=8.9
Q ss_pred CCccccCCCceEEe
Q 003611 192 DPKCKVCRNAPQIR 205 (807)
Q Consensus 192 ~p~c~~~g~~~~~~ 205 (807)
..+|-.||.+++.|
T Consensus 21 ~~~Cd~cg~~L~qR 34 (36)
T PF05191_consen 21 EGVCDNCGGELVQR 34 (36)
T ss_dssp TTBCTTTTEBEBEE
T ss_pred CCccCCCCCeeEeC
Confidence 45677777766554
No 202
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=32.17 E-value=33 Score=25.43 Aligned_cols=11 Identities=45% Similarity=1.090 Sum_probs=5.3
Q ss_pred chhccCCCCCc
Q 003611 177 QCENCGKLLNA 187 (807)
Q Consensus 177 ~ce~cG~~l~~ 187 (807)
.|..||..++.
T Consensus 21 vC~~CG~Vl~e 31 (43)
T PF08271_consen 21 VCPNCGLVLEE 31 (43)
T ss_dssp EETTT-BBEE-
T ss_pred ECCCCCCEeec
Confidence 56666665543
No 203
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.50 E-value=30 Score=24.14 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=14.7
Q ss_pred chhccCCCCCccccCCCccccCCCc
Q 003611 177 QCENCGKLLNATDLKDPKCKVCRNA 201 (807)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~ 201 (807)
+|..||..+++.+ ....|+.||.+
T Consensus 3 ~C~~CGy~y~~~~-~~~~CP~Cg~~ 26 (33)
T cd00350 3 VCPVCGYIYDGEE-APWVCPVCGAP 26 (33)
T ss_pred ECCCCCCEECCCc-CCCcCcCCCCc
Confidence 3566776665533 34578888864
No 204
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=30.74 E-value=29 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.592 Sum_probs=8.2
Q ss_pred ccCCCCCcccc-CCCccccCC
Q 003611 180 NCGKLLNATDL-KDPKCKVCR 199 (807)
Q Consensus 180 ~cG~~l~~~el-~~p~c~~~g 199 (807)
.||..+.+.+. ....|+-||
T Consensus 3 sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 3 SCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred cCCCcccCcccCceEeCCCCC
Confidence 34444444432 223344444
No 205
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=30.57 E-value=33 Score=35.41 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCCCce
Q 003611 123 ACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAP 202 (807)
Q Consensus 123 ~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (807)
.....-.++..++-+-+....+.=|..|++.+.-.|+.+.||. |++....--.|-.|++.+....| ...|..||..+
T Consensus 117 tl~~m~ek~~~ql~La~~iRavd~~dva~~v~~~hfLpd~~gn--~r~f~rq~~rc~~c~~k~rr~pl-~g~c~kcg~~~ 193 (253)
T COG1933 117 QLGDMEEKVKRQLDLARRIRAVDEHDVAERVLNSHFIPDLRGN--LRSFTRQEFRCVKCNTKFRRPPL-DGKCPICGGKI 193 (253)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHhHHHHHHhhccCCCcchhhh--hhhhhhheeehHhhhhhhcCCCc-cccccccCCeE
Confidence 3444555566667777777788889999999988899999988 76544334568888887765444 35799999865
Q ss_pred EE
Q 003611 203 QI 204 (807)
Q Consensus 203 ~~ 204 (807)
..
T Consensus 194 ~l 195 (253)
T COG1933 194 VL 195 (253)
T ss_pred EE
Confidence 53
No 206
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=30.48 E-value=33 Score=29.85 Aligned_cols=25 Identities=24% Similarity=0.845 Sum_probs=16.8
Q ss_pred chhccCCCCCccccCC-CccccCCCc
Q 003611 177 QCENCGKLLNATDLKD-PKCKVCRNA 201 (807)
Q Consensus 177 ~ce~cG~~l~~~el~~-p~c~~~g~~ 201 (807)
.|-.||-.+.+..+.- -+|++|++.
T Consensus 60 ~CkkCGfef~~~~ik~pSRCP~CKSE 85 (97)
T COG3357 60 RCKKCGFEFRDDKIKKPSRCPKCKSE 85 (97)
T ss_pred hhcccCccccccccCCcccCCcchhh
Confidence 4667777777655553 478888753
No 207
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=29.31 E-value=4.8e+02 Score=24.46 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=66.5
Q ss_pred EEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchhh------HHHHHHHHHcCCCHHHH-------
Q 003611 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG------TATETKAMEDNCSPKEI------- 90 (807)
Q Consensus 24 ~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~hG------~~i~~~A~~~g~~p~e~------- 90 (807)
++|..+..+.+|.+ ..+.. ..+.-++..+......++++|-.-++ ..+...+.+.|+++..+
T Consensus 3 IvVLG~~~~~~~~~--~~~~~---R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~ 77 (150)
T cd06259 3 IVVLGGGVNGDGPS--PILAE---RLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRST 77 (150)
T ss_pred EEEeCCccCCCCCC--hHHHH---HHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCC
Confidence 45666666666665 44333 24666666666667777888876554 33445566778766554
Q ss_pred -HHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHhC
Q 003611 91 -CDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDN 134 (807)
Q Consensus 91 -~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~~ 134 (807)
+-.+....++.++..++ ....--|++.|......+|+++.-.
T Consensus 78 ~T~ena~~~~~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~~ 120 (150)
T cd06259 78 NTYENARFSAELLRERGI--RSVLLVTSAYHMPRALLIFRKAGLD 120 (150)
T ss_pred CHHHHHHHHHHHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCCC
Confidence 23444556667777777 3344457789999999999987543
No 208
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=29.21 E-value=66 Score=34.89 Aligned_cols=65 Identities=14% Similarity=-0.066 Sum_probs=40.5
Q ss_pred EEEE-Eecccc---chhchHHHHhhhCCCCcccCeEEEeecee-ecCCCccccccCCccChhhhhhcCCCchhHHHHHHh
Q 003611 309 YQFM-GKDNVP---FHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383 (807)
Q Consensus 309 ih~i-GkDii~---fH~i~~pa~l~a~~~~~~~p~~i~~hg~l-~~~G~KMSKS~GN~I~~~d~l~~~~~~D~lR~~ll~ 383 (807)
-|++ |.|++. -|. .+..++|. +.| .+.++..+ +.+|+||||+.|.. .+.+ + ++.++ +..|+..
T Consensus 194 ThVvRG~D~l~~t~~Q~----~l~~aLg~--~~P-~y~H~pll~~~~g~kLSKr~~~~-~i~~--~-g~~p~-l~~~l~~ 261 (299)
T PRK05710 194 THVVRGADLLDSTPRQI----YLQQLLGL--PTP-RYLHLPLVLNADGQKLSKQNGAP-ALDA--A-GPLPV-LAAALRF 261 (299)
T ss_pred CEEEeChhhhhcCHHHH----HHHHHcCC--CCC-eEEEeecccCCCCCcccccCCcc-chhh--c-CcCHH-HHHHHHH
Confidence 3444 777653 232 34455664 355 56666776 58999999998764 3444 3 68887 7777765
Q ss_pred cC
Q 003611 384 NR 385 (807)
Q Consensus 384 ~~ 385 (807)
-+
T Consensus 262 lG 263 (299)
T PRK05710 262 LG 263 (299)
T ss_pred cC
Confidence 43
No 209
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.20 E-value=50 Score=28.32 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=28.7
Q ss_pred HHHHHHHHCCCceeE--------------ecCcchhhHHHHHHH------HHcCCCHHHHHHHHHHHH
Q 003611 51 VFARFCRLRGYNAIY--------------ICGTDEYGTATETKA------MEDNCSPKEICDKYHVIH 98 (807)
Q Consensus 51 v~~R~~r~~G~~V~~--------------v~G~D~hG~~i~~~A------~~~g~~p~e~~~~~~~~~ 98 (807)
=+..+++.+||+|.- ++|-|..=.-++... ...|+||.|+++...+++
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 367888889998844 444443211111111 235999999998776553
No 210
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.63 E-value=89 Score=36.61 Aligned_cols=51 Identities=22% Similarity=0.557 Sum_probs=33.4
Q ss_pred eeeeeeeecCCCCcccccccccccCCCCCCCCCCC-----CCcchhccCCCCCccccCCCccccCCCce
Q 003611 139 ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESA-----RGDQCENCGKLLNATDLKDPKCKVCRNAP 202 (807)
Q Consensus 139 ~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~-----~g~~ce~cG~~l~~~el~~p~c~~~g~~~ 202 (807)
++..+..+|.+|+... .||. |...-. ..-.|..||..... ...|+.||..-
T Consensus 208 rGya~~~~C~~Cg~~~-------~C~~--C~~~l~~h~~~~~l~Ch~Cg~~~~~----~~~Cp~C~s~~ 263 (505)
T TIGR00595 208 RGYSKNLLCRSCGYIL-------CCPN--CDVSLTYHKKEGKLRCHYCGYQEPI----PKTCPQCGSED 263 (505)
T ss_pred CcCCCeeEhhhCcCcc-------CCCC--CCCceEEecCCCeEEcCCCcCcCCC----CCCCCCCCCCe
Confidence 4555667899987653 5888 864321 23469999975432 34799998753
No 211
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.96 E-value=2.5e+02 Score=25.80 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHCCCceeEecCcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCccccc-ccCCCChhHHHHHH
Q 003611 47 LSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDN-FGRTSTPQQTEACQ 125 (807)
Q Consensus 47 l~aDv~~R~~r~~G~~V~~v~G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D~-f~rT~~~~~~~~v~ 125 (807)
+..+++++++|..|++|.++-...... .+...|.+. .+|. .+..++..|...+.
T Consensus 14 lG~~~~~~~l~~~G~~vi~lG~~vp~e-~~~~~a~~~------------------------~~d~V~iS~~~~~~~~~~~ 68 (122)
T cd02071 14 RGAKVIARALRDAGFEVIYTGLRQTPE-EIVEAAIQE------------------------DVDVIGLSSLSGGHMTLFP 68 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHH-HHHHHHHHc------------------------CCCEEEEcccchhhHHHHH
Confidence 346889999999999999976543322 222233222 1221 22233456777778
Q ss_pred HHHHHHHhCCC
Q 003611 126 AIFKKLLDNNW 136 (807)
Q Consensus 126 ~~f~~L~~~G~ 136 (807)
++...|.++|.
T Consensus 69 ~~~~~L~~~~~ 79 (122)
T cd02071 69 EVIELLRELGA 79 (122)
T ss_pred HHHHHHHhcCC
Confidence 88888877755
No 212
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.68 E-value=51 Score=30.41 Aligned_cols=8 Identities=25% Similarity=0.912 Sum_probs=4.0
Q ss_pred ccccCCCc
Q 003611 194 KCKVCRNA 201 (807)
Q Consensus 194 ~c~~~g~~ 201 (807)
+|+.||.+
T Consensus 90 ~CP~Cgs~ 97 (117)
T PRK00564 90 VCEKCHSK 97 (117)
T ss_pred cCcCCCCC
Confidence 45555543
No 213
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=26.59 E-value=44 Score=33.06 Aligned_cols=28 Identities=14% Similarity=0.534 Sum_probs=17.1
Q ss_pred cchhccCCCCCccccCCCccccCCCceEEee
Q 003611 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRD 206 (807)
Q Consensus 176 ~~ce~cG~~l~~~el~~p~c~~~g~~~~~~~ 206 (807)
-.|..|++.+. .....|++||+++..+.
T Consensus 140 ~rC~GC~~~f~---~~~~~Cp~CG~~~~~~~ 167 (177)
T COG1439 140 LRCHGCKRIFP---EPKDFCPICGSPLKRKR 167 (177)
T ss_pred EEEecCceecC---CCCCcCCCCCCceEEee
Confidence 45666777665 12246888888766543
No 214
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=26.41 E-value=36 Score=33.17 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=24.4
Q ss_pred cchhccCCCCCcccc--CCCccccCCCceEEeeecceeEeccchHHHHHHHHH
Q 003611 176 DQCENCGKLLNATDL--KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYIN 226 (807)
Q Consensus 176 ~~ce~cG~~l~~~el--~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~ 226 (807)
-.|+.|+.-++-.+. .+-.|+.||.+++. ++-+...+.|.+-++
T Consensus 110 Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~-------~dn~~~i~~l~~~i~ 155 (158)
T TIGR00373 110 FICPNMCVRFTFNEAMELNFTCPRCGAMLDY-------LDNSEAIEKLEEQIK 155 (158)
T ss_pred EECCCCCcEeeHHHHHHcCCcCCCCCCEeee-------ccCHHHHHHHHHHHH
Confidence 356666655443332 24678888888763 344555555554443
No 215
>PRK12496 hypothetical protein; Provisional
Probab=25.56 E-value=34 Score=33.59 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=0.0
Q ss_pred chhccCCCCCccccCCCccccCCCceEEeeecc
Q 003611 177 QCENCGKLLNATDLKDPKCKVCRNAPQIRDTNH 209 (807)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~ 209 (807)
+|..||+.++... ....|+.||+++..+..+.
T Consensus 129 ~C~gC~~~~~~~~-~~~~C~~CG~~~~r~~~~~ 160 (164)
T PRK12496 129 VCKGCKKKYPEDY-PDDVCEICGSPVKRKMVKR 160 (164)
T ss_pred ECCCCCccccCCC-CCCcCCCCCChhhhcchhh
No 216
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=25.40 E-value=62 Score=39.46 Aligned_cols=50 Identities=20% Similarity=0.546 Sum_probs=0.0
Q ss_pred eeeeeeeecCCCCcccccccccccCCCCCCCC-----CCCCCcchhccCCCCCccccCCCccccCCCc
Q 003611 139 ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNY-----ESARGDQCENCGKLLNATDLKDPKCKVCRNA 201 (807)
Q Consensus 139 ~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~-----~~~~g~~ce~cG~~l~~~el~~p~c~~~g~~ 201 (807)
++..+...|..|+...- ||. |.. .....-.|..||+.-.... .|+.||++
T Consensus 430 RGys~~l~C~~Cg~v~~-------Cp~--Cd~~lt~H~~~~~L~CH~Cg~~~~~p~----~Cp~Cgs~ 484 (730)
T COG1198 430 RGYAPLLLCRDCGYIAE-------CPN--CDSPLTLHKATGQLRCHYCGYQEPIPQ----SCPECGSE 484 (730)
T ss_pred CCccceeecccCCCccc-------CCC--CCcceEEecCCCeeEeCCCCCCCCCCC----CCCCCCCC
No 217
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.19 E-value=2.4e+02 Score=26.72 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHHHhCCCeeee-------eeeeeecCCCCccc
Q 003611 117 TPQQTEACQAIFKKLLDNNWLIEN-------TMQQPYCDTCKRFL 154 (807)
Q Consensus 117 ~~~~~~~v~~~f~~L~~~G~iy~~-------~~~~~y~~~~~~~l 154 (807)
+..+.+..+..|..+. +|-+..+ .-..|+|..|+...
T Consensus 37 s~V~pe~L~fafe~l~-~gt~~ega~L~i~~~p~~~~C~~CG~~~ 80 (135)
T PRK03824 37 QDVDKEIVEFALNELL-KGTILEGAEIIFEEEEAVLKCRNCGNEW 80 (135)
T ss_pred hhhhHHHHHHHHHHHH-cCCcccCCEEEEEecceEEECCCCCCEE
Confidence 3355666677776654 5555443 33678888877543
No 218
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=25.00 E-value=60 Score=31.05 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=26.7
Q ss_pred CCCcccchHhhhhhhHHHHHHHHHHH---CCCceeEecCcchhhHHHHHHH--------HHcCCCHHHHHH
Q 003611 33 VNNVPHLGNIIGSVLSADVFARFCRL---RGYNAIYICGTDEYGTATETKA--------MEDNCSPKEICD 92 (807)
Q Consensus 33 ~ng~lHiGHa~~~~l~aDv~~R~~r~---~G~~V~~v~G~D~hG~~i~~~A--------~~~g~~p~e~~~ 92 (807)
=-|++||||++.. .-.+..-++. .+..+.+-++.|.+ +-..+| ...|.+|++-..
T Consensus 40 DFGPlnL~~lyrf---c~~l~~~L~~~~~~~k~iv~yts~d~~--kRaNAA~Lig~y~Vi~l~~spe~A~~ 105 (141)
T PF14671_consen 40 DFGPLNLAQLYRF---CCKLNKKLKSPELKKKKIVHYTSSDPK--KRANAAFLIGAYAVIYLGMSPEEAYK 105 (141)
T ss_dssp ------HHHHHHH---HHHHHHHHH-GGGTTSEEEEEE-S-HH--HHHHHHHHHHHHHHHTS---HHHHHH
T ss_pred cCCCccHHHHHHH---HHHHHHHHcCHHhcCCeEEEECCCChh--HHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3499999999973 2345555544 79999999998874 222222 135777776543
No 219
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.88 E-value=39 Score=26.66 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=12.8
Q ss_pred ccccCCCceEEeeecc
Q 003611 194 KCKVCRNAPQIRDTNH 209 (807)
Q Consensus 194 ~c~~~g~~~~~~~~~~ 209 (807)
.|..||...++.+.+-
T Consensus 24 ~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 24 ICDECGAELEVVSLDP 39 (54)
T ss_pred eCCCCCCEEEEEeCCC
Confidence 5888898888877666
No 220
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=24.23 E-value=81 Score=37.44 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=10.5
Q ss_pred chhccCCCCCccccCCCccccCCCc
Q 003611 177 QCENCGKLLNATDLKDPKCKVCRNA 201 (807)
Q Consensus 177 ~ce~cG~~l~~~el~~p~c~~~g~~ 201 (807)
.|..||.... -..-.|+.||+.
T Consensus 520 ~C~~CG~~~~---~~~~~CP~CGs~ 541 (555)
T cd01675 520 ICNDCGYIGE---GEGFKCPKCGSE 541 (555)
T ss_pred cCCCCCCCCc---CCCCCCcCCCCc
Confidence 5666665321 112356666643
No 221
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.18 E-value=45 Score=23.50 Aligned_cols=24 Identities=25% Similarity=0.755 Sum_probs=12.3
Q ss_pred hhccCCCCCccccCCCccccCCCce
Q 003611 178 CENCGKLLNATDLKDPKCKVCRNAP 202 (807)
Q Consensus 178 ce~cG~~l~~~el~~p~c~~~g~~~ 202 (807)
|..||...+..+. -..|+.||.+-
T Consensus 5 C~~CG~i~~g~~~-p~~CP~Cg~~~ 28 (34)
T cd00729 5 CPVCGYIHEGEEA-PEKCPICGAPK 28 (34)
T ss_pred CCCCCCEeECCcC-CCcCcCCCCch
Confidence 4555555443221 13677887653
No 222
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=24.14 E-value=97 Score=30.89 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=22.0
Q ss_pred CeeeeeeeeeecCCCCcccccccccccCCCCCCCCCCCCCcchhccCCCCCc
Q 003611 136 WLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNA 187 (807)
Q Consensus 136 ~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~ 187 (807)
+-+......|+|+.|..=++--+. -.++-.|+.||..|..
T Consensus 109 l~~e~~~~~Y~Cp~C~~rytf~eA------------~~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 109 LEEEENNMFFFCPNCHIRFTFDEA------------MEYGFRCPQCGEMLEE 148 (178)
T ss_pred hhhccCCCEEECCCCCcEEeHHHH------------hhcCCcCCCCCCCCee
Confidence 445555566667776543332111 1245678888877654
No 223
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=23.88 E-value=1.6e+02 Score=33.11 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCceeEec--CcchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcCcccc-------cccCCC
Q 003611 49 ADVFARFCRLRGYNAIYIC--GTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD-------NFGRTS 116 (807)
Q Consensus 49 aDv~~R~~r~~G~~V~~v~--G~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~lgI~~D-------~f~rT~ 116 (807)
.=+++|-+...|-+|++|. |||.|+.-...-+... .-.+.-...|.++|+..|+.-+ .|.||-
T Consensus 234 ~~l~a~~~~~~g~~v~~V~~gGwDTH~~~~~~~~~ll-----~~L~~alaaf~~dL~~~g~~d~t~vv~~SEFGRt~ 305 (392)
T PF07394_consen 234 QLLLARRLIEAGVRVVFVSLGGWDTHSNQGNRHARLL-----PELDQALAAFIQDLKERGLLDDTLVVTMSEFGRTP 305 (392)
T ss_pred HHHHHHHHhhcCCEEEEECCCCccCccccHhHHHHHH-----HHHHHHHHHHHHHHHhcCCcCceEEEEeeecCCCc
Confidence 3357777777899999987 9999985433322222 2234455677788888776443 566765
No 224
>PLN02886 aminoacyl-tRNA ligase
Probab=23.82 E-value=39 Score=37.96 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=18.0
Q ss_pred ccCeEEEee--cee-ec-CC-CccccccC---CccChhh
Q 003611 336 TLMKTISVT--EYL-NY-ES-GKFSKSKG---IGVFGND 366 (807)
Q Consensus 336 ~~p~~i~~h--g~l-~~-~G-~KMSKS~G---N~I~~~d 366 (807)
+.|..++.. ..+ .+ +| .|||||.. |.|...|
T Consensus 229 ~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~D 267 (389)
T PLN02886 229 KVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLD 267 (389)
T ss_pred cCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecC
Confidence 355555532 223 24 45 69999995 5776544
No 225
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=23.28 E-value=47 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=12.3
Q ss_pred chhccCCCCCccccC---CCccccCCC
Q 003611 177 QCENCGKLLNATDLK---DPKCKVCRN 200 (807)
Q Consensus 177 ~ce~cG~~l~~~el~---~p~c~~~g~ 200 (807)
+|..||.++.+.+.. ...|..||.
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~ 28 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGY 28 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCC
Confidence 355566555544432 235666663
No 226
>PRK03094 hypothetical protein; Provisional
Probab=23.25 E-value=75 Score=27.24 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=27.6
Q ss_pred HHHHHHHCCCceeEecC--------------cchhhHHHHHHH------HHcCCCHHHHHHHHHHH
Q 003611 52 FARFCRLRGYNAIYICG--------------TDEYGTATETKA------MEDNCSPKEICDKYHVI 97 (807)
Q Consensus 52 ~~R~~r~~G~~V~~v~G--------------~D~hG~~i~~~A------~~~g~~p~e~~~~~~~~ 97 (807)
+..+++.+||+|.-+.+ -|..=.-|+..+ ...|+++.|+++....+
T Consensus 13 i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve~r 78 (80)
T PRK03094 13 VQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVESR 78 (80)
T ss_pred HHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHHHh
Confidence 78999999999954432 222111122111 23589999998776543
No 227
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=22.94 E-value=54 Score=35.05 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=29.0
Q ss_pred EEEE-Eecccc---chhchHHHHhhhCCCCcccCeEEEeecee-ecCCCccccccCC
Q 003611 309 YQFM-GKDNVP---FHTVMFPSTLLGTGENWTLMKTISVTEYL-NYESGKFSKSKGI 360 (807)
Q Consensus 309 ih~i-GkDii~---fH~i~~pa~l~a~~~~~~~p~~i~~hg~l-~~~G~KMSKS~GN 360 (807)
-|++ |.|++. -|. .+..++|. ..| .+.+++.+ +.+|.|+||+.|-
T Consensus 187 ThViRG~D~l~~t~~q~----~l~~aLg~--~~P-~y~H~pll~~~~g~kLSKR~~~ 236 (272)
T TIGR03838 187 THVVRGADLLDSTPRQI----YLQRLLGL--PPP-RYLHLPLVVNADGEKLSKQNGA 236 (272)
T ss_pred CEEEeCHhhhhccHHHH----HHHHHhCC--CCC-eEEechhhhCCCCCeeeccCCc
Confidence 3544 677652 233 34456664 456 56667776 5899999999875
No 228
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.78 E-value=67 Score=31.21 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCc
Q 003611 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYN 62 (807)
Q Consensus 29 ~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~ 62 (807)
.+.||||+.=.+. + +..||+.|.+|..|++
T Consensus 21 ~~~YP~GDvp~~~--G--VCTDVViRA~R~~g~D 50 (164)
T PF06940_consen 21 SIGYPNGDVPDNT--G--VCTDVVIRAYRDAGYD 50 (164)
T ss_pred ecCCCCCCCCCCC--C--ccHHHHHHHHHHcCCC
Confidence 4679999988775 3 3589999999999887
No 229
>PRK05978 hypothetical protein; Provisional
Probab=22.49 E-value=58 Score=31.39 Aligned_cols=9 Identities=44% Similarity=1.213 Sum_probs=6.5
Q ss_pred cccCCCCCCCC
Q 003611 160 EGTCPFEGCNY 170 (807)
Q Consensus 160 ~g~cp~~~c~~ 170 (807)
.++||. ||.
T Consensus 33 ~grCP~--CG~ 41 (148)
T PRK05978 33 RGRCPA--CGE 41 (148)
T ss_pred cCcCCC--CCC
Confidence 467888 875
No 230
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.39 E-value=5e+02 Score=29.29 Aligned_cols=106 Identities=16% Similarity=0.298 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcchh-h--HHHHHHHHHcCC--
Q 003611 11 APPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEY-G--TATETKAMEDNC-- 85 (807)
Q Consensus 11 ~~~~~~~~~~~~~~~it~~~Py~ng~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~h-G--~~i~~~A~~~g~-- 85 (807)
...++.|..+++.++...++- | -| -+++ .-=+|.|++-+||.|.++||-+=- | +-..+.|.+.++
T Consensus 90 ~~~~~~~~K~kpsVimfVGLq---G---~G--KTTt--c~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780|consen 90 GKSALQPKKGKPSVIMFVGLQ---G---SG--KTTT--CTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred CCcccccccCCCcEEEEEecc---C---CC--ccee--HHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCee
Confidence 445677887888777776652 2 12 3433 455899999999999999985431 1 234556666554
Q ss_pred -------CHHHHHHHHHHHHHHHHhhcCcccccccCCCChhHHHHHHHHHHHHHh
Q 003611 86 -------SPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLD 133 (807)
Q Consensus 86 -------~p~e~~~~~~~~~~~~~~~lgI~~D~f~rT~~~~~~~~v~~~f~~L~~ 133 (807)
+|..++.+-.++|++. .+|..+--|+-+|++ -..+|+.|.+
T Consensus 160 ygsyte~dpv~ia~egv~~fKke------~fdvIIvDTSGRh~q-e~sLfeEM~~ 207 (483)
T KOG0780|consen 160 YGSYTEADPVKIASEGVDRFKKE------NFDVIIVDTSGRHKQ-EASLFEEMKQ 207 (483)
T ss_pred EecccccchHHHHHHHHHHHHhc------CCcEEEEeCCCchhh-hHHHHHHHHH
Confidence 6888888888888765 245333233344543 3678888876
No 231
>PRK00420 hypothetical protein; Validated
Probab=21.88 E-value=52 Score=30.12 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=4.6
Q ss_pred ccccCCCceE
Q 003611 194 KCKVCRNAPQ 203 (807)
Q Consensus 194 ~c~~~g~~~~ 203 (807)
+|+.||..+.
T Consensus 42 ~Cp~Cg~~~~ 51 (112)
T PRK00420 42 VCPVHGKVYI 51 (112)
T ss_pred ECCCCCCeee
Confidence 3455554443
No 232
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=21.72 E-value=2.3e+02 Score=31.45 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=59.9
Q ss_pred CCCcccchHhhhhhhHHHHHHHHHHHC-CCceeEecCcchhhHHHH-H--HHH----HcCC-------CHHHHHHHHHHH
Q 003611 33 VNNVPHLGNIIGSVLSADVFARFCRLR-GYNAIYICGTDEYGTATE-T--KAM----EDNC-------SPKEICDKYHVI 97 (807)
Q Consensus 33 ~ng~lHiGHa~~~~l~aDv~~R~~r~~-G~~V~~v~G~D~hG~~i~-~--~A~----~~g~-------~p~e~~~~~~~~ 97 (807)
.-+++|.||=+ | ..|.+... |-=|+.+.|...-|+... . ++- +.+. ++--++-+|+.-
T Consensus 191 TRNp~HraHEy---l----~K~Al~~vdgllv~plVG~tk~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~aMRyagP 263 (397)
T COG2046 191 TRNPPHRAHEY---L----QKRALEKVDGLLVHPLVGATKPGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPAAMRYAGP 263 (397)
T ss_pred cCCCchHHHHH---H----HHHHHHhcCcEEEEeeeccccCCCchHHHHHHHHHHHHHhCCCCCcEEEEecHHHhhhcCc
Confidence 44789999943 4 34444444 577788888876655321 1 111 1121 122233333321
Q ss_pred HHHHH-----hhcCcccccccCCC----ChhHHHHHHHHHHHHH-hCCCeeeeeeeeeecCCCCccccc
Q 003611 98 HKDVY-----KWFDISFDNFGRTS----TPQQTEACQAIFKKLL-DNNWLIENTMQQPYCDTCKRFLAD 156 (807)
Q Consensus 98 ~~~~~-----~~lgI~~D~f~rT~----~~~~~~~v~~~f~~L~-~~G~iy~~~~~~~y~~~~~~~l~d 156 (807)
-...| +.+|.+.=.+.|-. +.+-.-..|.+|.+.. +-|..-.--.+.+||++|+++.+.
T Consensus 264 rEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~ 332 (397)
T COG2046 264 REALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVST 332 (397)
T ss_pred HHHHHHHHHHhhcCCeeeeecCCCCCccccCCcccHHHHHHhcccccCcEEEeccceeecccccCCccc
Confidence 11111 23454332222211 0011112466776665 667777777888999999887664
No 233
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=21.67 E-value=90 Score=24.86 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=17.0
Q ss_pred CcccchHhhhhhhHHHHHHHHHHHCCCceeEecCcch
Q 003611 35 NVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71 (807)
Q Consensus 35 g~lHiGHa~~~~l~aDv~~R~~r~~G~~V~~v~G~D~ 71 (807)
+++|.||.+ ++ .+..+..+ ++....++|.
T Consensus 9 dp~H~GH~~--~l-----~~a~~~~~-~~vv~i~~~~ 37 (66)
T TIGR00125 9 DPFHLGHLD--LL-----ERAKELFD-ELIVGVGSDQ 37 (66)
T ss_pred CCCCHHHHH--HH-----HHHHHhCC-EEEEEECchH
Confidence 779999976 22 22223334 6666666644
No 234
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.17 E-value=66 Score=21.31 Aligned_cols=7 Identities=43% Similarity=1.217 Sum_probs=2.9
Q ss_pred chhccCC
Q 003611 177 QCENCGK 183 (807)
Q Consensus 177 ~ce~cG~ 183 (807)
.|..||.
T Consensus 16 ~Cp~CG~ 22 (26)
T PF10571_consen 16 FCPHCGY 22 (26)
T ss_pred cCCCCCC
Confidence 3444443
No 235
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=20.73 E-value=66 Score=28.34 Aligned_cols=28 Identities=29% Similarity=0.670 Sum_probs=22.4
Q ss_pred cchhccCCCCCccccC--------CCccccCCCceE
Q 003611 176 DQCENCGKLLNATDLK--------DPKCKVCRNAPQ 203 (807)
Q Consensus 176 ~~ce~cG~~l~~~el~--------~p~c~~~g~~~~ 203 (807)
..|+.|++.+..-|++ -++|..|+.++-
T Consensus 34 S~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~~I~ 69 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGAPIP 69 (92)
T ss_pred CcCcCCCCcCcccccchHHHHHHhCCCCcccCCCCC
Confidence 5789999999888875 578999997653
No 236
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=20.44 E-value=2.6e+02 Score=24.16 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=34.9
Q ss_pred EEEEEEEEeCCCCCceEEEEEEcCCCccEEEEeCCCCCCCchhcCCCEEEEeee
Q 003611 653 VGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCN 706 (807)
Q Consensus 653 vg~i~~~~~hp~adkl~~~~vd~G~~~~~~ivsg~~~~~~~~~l~g~~v~~~~n 706 (807)
-|||+++... . +..-+||+|+ ..|.|.-.+..-..|+..+|..|+|-+-
T Consensus 6 P~kVi~i~~~--~--~~~A~vd~~G-v~r~V~l~Lv~~~~~~~~vGDyVLVHaG 54 (82)
T PRK10413 6 PGQVLAVGED--I--HQLAQVEVCG-IKRDVNIALICEGNPADLLGQWVLVHVG 54 (82)
T ss_pred ceEEEEECCC--C--CcEEEEEcCC-eEEEEEeeeeccCCcccccCCEEEEecc
Confidence 4889998643 2 4568899995 6688877776544456678999988653
No 237
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=20.25 E-value=74 Score=25.53 Aligned_cols=46 Identities=35% Similarity=0.649 Sum_probs=23.8
Q ss_pred eecCCCCcccccc--cccccCCCCCCCCCCCCCcchhccCCCCCccccCCCccccCC
Q 003611 145 PYCDTCKRFLADR--LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199 (807)
Q Consensus 145 ~y~~~~~~~l~d~--~v~g~cp~~~c~~~~~~g~~ce~cG~~l~~~el~~p~c~~~g 199 (807)
..|.+|+.-+++. .+.=.||. ||.. ---.|..|.+.-. ...|+.||
T Consensus 8 ~~CtSCg~~i~~~~~~~~F~CPn--CG~~--~I~RC~~CRk~~~-----~Y~CP~CG 55 (59)
T PRK14890 8 PKCTSCGIEIAPREKAVKFLCPN--CGEV--IIYRCEKCRKQSN-----PYTCPKCG 55 (59)
T ss_pred ccccCCCCcccCCCccCEeeCCC--CCCe--eEeechhHHhcCC-----ceECCCCC
Confidence 3577777776643 34555666 6542 1223555554322 23465565
Done!