Query 003611
Match_columns 807
No_of_seqs 393 out of 3504
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 18:09:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/003611.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1661-1665//hhsearch_pdb/003611hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rqg_A Methionyl-tRNA syntheta 1.0 1 1 1221.6 54.3 695 21-748 1-722 (722)
2 3h99_A Methionyl-tRNA syntheta 1.0 1 1 920.6 42.2 537 15-588 11-557 (560)
3 3u1f_A Methionyl-tRNA syntheta 1.0 1 1 907.4 40.0 518 19-584 6-540 (542)
4 3kfl_A Methionyl-tRNA syntheta 1.0 1 1 892.0 40.4 521 19-589 23-561 (564)
5 4dlp_A Aminoacyl-tRNA syntheta 1.0 1 1 842.3 42.3 509 20-584 23-535 (536)
6 2x1l_A Methionyl-tRNA syntheta 1.0 1 1 794.1 39.9 505 19-581 9-524 (524)
7 2d5b_A Methionyl-tRNA syntheta 1.0 1 1 773.4 37.1 493 21-578 2-500 (500)
8 2csx_A Methionyl-tRNA syntheta 1.0 1 1 766.4 33.1 490 21-580 4-497 (497)
9 1ile_A Ilers, isoleucyl-tRNA s 1.0 1 1 728.2 29.2 496 19-538 35-772 (821)
10 1gax_A Valrs, valyl-tRNA synth 1.0 1 1 710.7 41.2 494 13-537 23-696 (862)
No 1
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=1.00 E-value=1 Score=1221.64 Aligned_cols=695 Identities=38% Similarity=0.697 Sum_probs=599.9
Q ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99299990899999924231763453599999999998899155744963150799999998199999999999999999
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~~~ 100 (807)
+++||||+|+|||||.|||||++++++.+|+++||+||+|++|+|++|||+||+||+.+|+++|++|++++++++..|++
T Consensus 1 m~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCHHHCHHHCCHHHHHHHHHHHHHCCCCEEECCEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 98789953898899840003021118999999999996699657136037887899999998599999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 99654832343457898668999999999898679756400454103898953355401344789877777877830000
Q 003611 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 101 ~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~gd~ce~ 180 (807)
+|++|||++|.|+||+++.|.+.+|++|.+|+++|+||++.++++||+.|++||+|+||+|+||. ||++++||++|+.
T Consensus 81 ~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~--c~~~~~~Gd~c~~ 158 (722)
T 1rqg_A 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEV 158 (722)
T ss_dssp HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSS--SCCSCCCTTTCSS
T ss_pred HHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCHHHCCCCCCC--CCCCCCCCCHHHH
T ss_conf 99980997899726888889999999999999789789411666021888968543430332676--6775678635541
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 48877754467984566899509954066558260039999999980878998885799999999872866401110258
Q 003611 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260 (807)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~ 260 (807)
||+.+++.+|++|+|++||++++.+.++||||+|++|+++|+++++++. |+++.++++.+||++||+||||||+++
T Consensus 159 ~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~----wp~~~~~~~~~wl~~gl~dw~ISR~~~ 234 (722)
T 1rqg_A 159 CGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP----WKPNVKNMVLSWIEEGLEERAITRDLN 234 (722)
T ss_dssp SCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC----CCHHHHHHHHHHHTTCCCCEECEECCS
T ss_pred CCCCCCHHHCCCCCCCCCCCEEEEEEECCEEEEHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 3662685550388646879676999815289985999999999998589----998999999999977986553241356
Q ss_pred CCCCCCCC--CCCCCEEEEEECCCCHHHHCCCCCC------HHHHHHCCC-CCCCCEEEEEEECCCCCHHCHHHHHHHHC
Q ss_conf 89744754--5689679998615520112036894------367641189-99851499997215540031598973207
Q 003611 261 WGVPVPLE--RFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKN-PENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (807)
Q Consensus 261 WGipvP~~--~~~~~viyVWfDA~~~Yis~~~~~~------~~~~~~W~~-~~d~~~i~~iGkDi~~fH~i~~pa~l~a~ 331 (807)
||+|+|.+ +.+++++||||||+++|++....|. ++|+.||+. +.++..+|++||||++||+++|||||+++
T Consensus 235 WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~ 314 (722)
T 1rqg_A 235 WGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAY 314 (722)
T ss_dssp SSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 86055862468999889997324211134477877640980188763488899971688736654543032428999605
Q ss_pred CC--------CCCCCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99--------8456708996110314898443246875593555412999425889987149987785434999998886
Q 003611 332 GE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (807)
Q Consensus 332 ~~--------~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n 403 (807)
+. +|++|+++++||||+.+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++||++.|..++|
T Consensus 315 ~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~-~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n 393 (722)
T 1rqg_A 315 GKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLD-VFPADYLRYYLTTIMPETRDSDFSFSDFKVRIN 393 (722)
T ss_dssp CCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTT-TSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEECCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 8874433246988888899850699488364000897687999998-649469999998449988888358899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999995709999999986789898788589999999999999999999972129999999999999987
Q 003611 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (807)
Q Consensus 404 ~~l~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N 483 (807)
++|+++++|+++|+..|+.+ ++++.+|... ...+.|+++++.+..+...+.++|++++|+.|++.+++|++.+|
T Consensus 394 ~~l~~~l~N~~~R~~~~~~k----~~~~~~~~~~--~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n 467 (722)
T 1rqg_A 394 EELVNNLGNFVHRALTFVNR----YFDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGN 467 (722)
T ss_dssp HTTTTTHHHHHHHHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998----5378888865--57888999999999999999999983579999999999999999
Q ss_pred HHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98874110100269957799999999999999998501612289999999809997544544554576432368776789
Q 003611 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (807)
Q Consensus 484 ~yi~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~ 563 (807)
+|++..+||.+.+++..++.+++++++++++.+++||+||||++|++||++||.+.. ..|.+ ..++
T Consensus 468 ~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~~~--~~w~~------------~~~~ 533 (722)
T 1rqg_A 468 RYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEV--KRWEF------------RELP 533 (722)
T ss_dssp HHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCCSC--CCSSC------------CCCC
T ss_pred HHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC--CCCHH------------CCCC
T ss_conf 999854725323789999999999999999999998612254789999997499754--67111------------0689
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---H---H-HHHHCCCCCCCC--CCCCCCCCCCCC
Q ss_conf 998118998876687826899999661077015889999999898---9---9-743103468998--543321111256
Q 003611 564 AGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKT---A---E-QLKKTKISDGGG--KKQKSAKSTAGA 634 (807)
Q Consensus 564 ~g~~i~~~~~LF~kie~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~---~-~~~~~~~~~~~~--~~~~~~~~~~~~ 634 (807)
.||+|+++++||+||+.++++++.+.+.++......+. ..++. . + ..++.. .+... .++......+++
T Consensus 534 ~g~~~~~~~~lf~ri~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 610 (722)
T 1rqg_A 534 AGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARI--LLDKYYKREDVIRVAKEKFG-DEAEVVLRRVYKDIKLKEK 610 (722)
T ss_dssp TTCBCCCCCCSCCCCCHHHHHHHHHHTTTTTCHHHHHH--HHHHHSCHHHHHHHHHHHHG-GGTHHHHHHHSSCCC----
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHCCCHHHCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 98881999988688797899999853123221111100--23333200001000024544-4433122222344443211
Q ss_pred CCCCCCCCCC-CCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHCCCCEEEEEEECCCCCCC
Q ss_conf 8888888767-721553799999998848999960899998179832899948987887000289977975201341003
Q 003611 635 KSKTTAEPEI-SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMR 713 (807)
Q Consensus 635 ~~~~~~~~~~-~~~~~~i~vg~I~~~~~hp~~~kl~~~~vd~g~~~~r~i~sg~~~~~~~~~l~g~~v~~~~nlk~~k~~ 713 (807)
+.....++.+ ||+|++||||+|++|++||+||||++|+||+|+ ++||||||++++|.+++|+|++|++++||||+|||
T Consensus 611 ~~~~~~~i~~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~ 689 (722)
T 1rqg_A 611 KEGKEMYVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLR 689 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCHHHHHHCCEEEEEEEEEEECCCCCCCEEEEEECCC-CEEEEEECCCCCCCHHHCCCCEEECEEEECCEEEC
T ss_conf 23656501476751046699999998757998753699997089-14899979865578778079978670687031047
Q ss_pred CCCCEEEEEEEECCCCCEEEEECCCCCCCCCCEEE
Q ss_conf 62000279522439998289974999999984364
Q 003611 714 GIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVA 748 (807)
Q Consensus 714 G~~S~gMll~~~~~~~~~~~~l~~~~~~~~G~~v~ 748 (807)
|++|+|||||++++ +++.+|.|+.++++|++|.
T Consensus 690 g~~S~gM~~~~~~~--~~i~~l~~~~~~~~G~~~~ 722 (722)
T 1rqg_A 690 GIGSQGMLLAADDG--ERVALLMPDKEVKLGAKVR 722 (722)
T ss_dssp -----------------------------------
T ss_pred CCCCCEEEEEEECC--CCEEEECCCCCCCCCCCCC
T ss_conf 82447699972079--9189947899999989897
No 2
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=1.00 E-value=1 Score=920.61 Aligned_cols=537 Identities=27% Similarity=0.507 Sum_probs=493.6
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999299990899999924231763453599999999998899155744963150799999998199999999999
Q 003611 15 KLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKY 94 (807)
Q Consensus 15 ~~~~~g~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~ 94 (807)
..+.+|+++||||+|+|||||++||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++++
T Consensus 11 ~~~~~~~~~~~v~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~ 89 (560)
T 3h99_A 11 GSMTQVAKKILVTCASPYANGSIHLGHMLE-HIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEM 89 (560)
T ss_dssp ------CCEEEEEECCCBTTSCCBHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 888899984899689998999846546799-9999999999997098178742146768099999998198999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999654832343457898668999999999898679756400454103898953355401344789877777877
Q 003611 95 HVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR 174 (807)
Q Consensus 95 ~~~~~~~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~ 174 (807)
.+.|++++++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.+|||+.|++||+|++|+|+||. |++.+++
T Consensus 90 ~~~~~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~--c~~~~~~ 167 (560)
T 3h99_A 90 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQY 167 (560)
T ss_dssp HHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTT--TCCSSEE
T ss_pred HHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEECCHHCCCCCCC--CCCCCCC
T ss_conf 99999999983999888432798789999999999999889989752468644765765042212787888--8885455
Q ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 83000048877754467984566899509954066558260039999999980878998885799999999872866401
Q 003611 175 GDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRC 254 (807)
Q Consensus 175 gd~ce~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ 254 (807)
||+||+||+.+++.++++|+|++||++++.+.++||||+|++++++|.+++++. .|+++.++.+.+|++++++|||
T Consensus 168 gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~l~~~l~D~~ 243 (560)
T 3h99_A 168 GDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG----ALQEQVANKMQEWFESGLQQWD 243 (560)
T ss_dssp TTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS----CSCHHHHHHHHHHHHHCCCCEE
T ss_pred CCHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHCCCCCCC
T ss_conf 631022045578465027755557888658743628988799799999999818----9898999999999856998877
Q ss_pred EEECC-CCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCC------HHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHH
Q ss_conf 11025-8897447545689679998615520112036894------3676411899985149999721554003159897
Q 003611 255 ITRDL-KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPST 327 (807)
Q Consensus 255 ISR~~-~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~------~~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~pa~ 327 (807)
|||++ .||+|+|.+ +++|+||||||+++|++.+.+|. .+|+.||+...+++++|++|+||++||+++|||+
T Consensus 244 IsR~~~~WG~~iP~~--~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~ 321 (560)
T 3h99_A 244 ISRDAPYFGFEIPNA--PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAM 321 (560)
T ss_dssp CEEESSCSSCBCTTC--TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHH
T ss_pred CCCCCCCCCEECCCC--CCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 556688678567998--996589685650419999988765148721488727677885268885044240289999999
Q ss_pred HHHCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 3207998456708996110314898443246875593555412999425889987149987-785434999998886899
Q 003611 328 LLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEV-SDTLFTWADLQAKSNNEL 406 (807)
Q Consensus 328 l~a~~~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~-~D~~Fs~~~l~~~~n~~l 406 (807)
++++|. ++|+++++||||+.+|+|||||+||+|+|.++++ .||+|++||||++.++.+ +|++|+++.+..++|++|
T Consensus 322 l~~~g~--~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~-~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l 398 (560)
T 3h99_A 322 LEGSNF--RKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLN-HFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADI 398 (560)
T ss_dssp HHHTTB--CCCSEEEEECCEEETTEECCTTTTCCCBHHHHHH-HSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHC
T ss_pred HHHCCC--CCCCEEEEEEEEEECCEECCCCCCCCCCHHHHHH-HCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 996799--9986899876798578020460898688999998-7681899999997489987788769999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999995709999999986789898788589999999999999999999972129999999999999987988
Q 003611 407 LNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486 (807)
Q Consensus 407 ~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi 486 (807)
++++||+++|+++++.+ ++++.+|.. ..|+++++.+..+++.+.++|++++++.|++.+++|+..+|+|+
T Consensus 399 ~~~l~n~~~R~~~~~~~----~~~~~~~~~------~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi 468 (560)
T 3h99_A 399 VNKVVNLASRNAGFINK----RFDGVLASE------LADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYV 468 (560)
T ss_dssp CCCCTHHHHTTHHHHHH----HSTTBCCSS------CSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988----538988986------13599999999999999999975589999999999999999999
Q ss_pred HHHCCHHHCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 74110100269--9577999999999999999985016122899999998099975445445545764323687767899
Q 003611 487 QESQFWKLYKE--DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPA 564 (807)
Q Consensus 487 ~~~~pW~l~k~--~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 564 (807)
+..+||.+.++ +..++.+++++++++++.+++||+||||++|++||++||++ ..|.+. . ..+ .
T Consensus 469 ~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~----~~w~~~-------~---~~~-~ 533 (560)
T 3h99_A 469 DEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE----LTWDGI-------Q---QPL-L 533 (560)
T ss_dssp HHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC----CCTGGG-------G---SCC-C
T ss_pred HHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC----CCHHHH-------H---CCC-C
T ss_conf 826856551786769999999999999999999998231427999999980899----772565-------1---667-9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 981189988766878268999996
Q 003611 565 GHKIGSPNPLFKELKDDEVEFFRS 588 (807)
Q Consensus 565 g~~i~~~~~LF~kie~~~i~~~~~ 588 (807)
|++++++++||+||+.++++++.+
T Consensus 534 ~~~i~~~~~lf~ri~~~~~~~~~~ 557 (560)
T 3h99_A 534 GHKVNPFKALYNRIDMRQVEALVE 557 (560)
T ss_dssp SCBCCCCSCSCCCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 888799885888899799999986
No 3
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=1.00 E-value=1 Score=907.44 Aligned_cols=518 Identities=21% Similarity=0.344 Sum_probs=464.9
Q ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99992999908999999242317634535999999999988991557449631507999999981999999999999999
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (807)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~ 98 (807)
...++||||||+|||||.|||||+++ ++.+|+++||+||+|++|+|++||||||+||+.+|+++|++|+++|++|++.|
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~-~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYS-TLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 88998898389988898545677899-99999999999941997404483273769999999984999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99996548323434578986689999999998986797564004541038989533554013447898777778778300
Q 003611 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (807)
Q Consensus 99 ~~~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~gd~c 178 (807)
+++|++|||++|.|+||+++.|.+.|+++|.+|+++|+||++.++++||++|++||+|++|++.|+. +|++|
T Consensus 85 ~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~--------~g~~~ 156 (542)
T 3u1f_A 85 KKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDK--------DGNPC 156 (542)
T ss_dssp HHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCEE
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCHHHHHHCCCCC--------CCCCC
T ss_conf 9999993994675864798899999999999996569679601148860467630012342011134--------67654
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 00488777544679845668995099540665582600399999999808789988857999999998728664011102
Q 003611 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258 (807)
Q Consensus 179 e~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~ 258 (807)
. +|++||++++.+.++||||+++++++++.+|+++.+.. .++....+...+|+.++++||||||+
T Consensus 157 ~--------------~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~P~~~~~~~~~~~~~~l~Dw~ISRq 221 (542)
T 3u1f_A 157 K--------------VSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGC-IVPEFRRREVIRAVEKGLPDLSVSRA 221 (542)
T ss_dssp E--------------EETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEEE
T ss_pred C--------------CCCCCCCCCEEECCCCCEECCHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5--------------55789980024315421001215789998777504666-68724567675545405644674555
Q ss_pred CC----CCCCCCCCCCCCCEEEEEECCCCHHHHCCCCC----------CHHHHHHCCCCCCCCEEEEEEECCCCCHHCHH
Q ss_conf 58----89744754568967999861552011203689----------43676411899985149999721554003159
Q 003611 259 LK----WGVPVPLERFKEKVFYVWFDAPIGYVSITSCY----------TNEWEQWWKNPENVELYQFMGKDNVPFHTVMF 324 (807)
Q Consensus 259 ~~----WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~----------~~~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~ 324 (807)
+. ||||+|.+ +++++||||||+++|++++..+ .++|..+|..|.| +|++|+||++||+++|
T Consensus 222 ~~~~~~WGipiP~~--~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d---~~~~G~D~~~fh~~~~ 296 (542)
T 3u1f_A 222 RATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPAD---VHVIGKDILKFHAIYW 296 (542)
T ss_dssp GGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCS---EEEEEGGGHHHHHTHH
T ss_pred CCCCCCCCCCCCCC--CCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCE---EEEECCCCCCCCCCHH
T ss_conf 56767789865888--672025652031011124431533458864454205666079521---8872300563353114
Q ss_pred HHHHHHCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89732079984567089961103148984432468755935554129994258899871499877854349999988868
Q 003611 325 PSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404 (807)
Q Consensus 325 pa~l~a~~~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~ 404 (807)
||++++.|. ++|+.+++||||+.+|+|||||+||+|+|.++++ +||+|++||||++.+++++|++||++.+.+++|+
T Consensus 297 ~a~l~~~g~--~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~-~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~ 373 (542)
T 3u1f_A 297 PAFLLSAGL--PLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAE-EFGYDALKYFLLRESGFSDDGDYSDKNMIARLNG 373 (542)
T ss_dssp HHHHHHHTC--CCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHH-HHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHH
T ss_pred HHHHHHHCC--CCCCEECCCCCEECCCCEECCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 899876313--5652010364161488350304688788567876-0693088999985286334654668887887655
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999957099999999867898987885899999999999999999999721299999999999999879
Q 003611 405 ELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484 (807)
Q Consensus 405 ~l~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~ 484 (807)
+|+|+|||+++|++.+..+ +++.+|... ...+.|+++++.+..+.+.+.++|++|++++|++.+++|++.+|+
T Consensus 374 ~l~n~l~N~~~r~~~~~~~-----~~~~~~~~~--~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~ 446 (542)
T 3u1f_A 374 ELADTLGNLVMRCTSAKIN-----VNGEWPSPA--AYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINA 446 (542)
T ss_dssp TTTTTHHHHHHHHHCTTTS-----TTSBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-----CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7777787999999975110-----257778620--002779999987642477777788878999999999999999999
Q ss_pred HHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88741101002699577999999999999999985016122899999998099975445445545764323687767899
Q 003611 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPA 564 (807)
Q Consensus 485 yi~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 564 (807)
|++..+||++.+++++++.+++++++++++.+++||+||||++|++||++||++......+.. ..|+.+++
T Consensus 447 Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~---------~~~~~l~~ 517 (542)
T 3u1f_A 447 YVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIEN---------FEFGAVPP 517 (542)
T ss_dssp HHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGG---------GSTTCSCT
T ss_pred HHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---------CCCCCCCC
T ss_conf 999658664435899999999999999999999999869679999999987999765555233---------10257999
Q ss_pred CCCCC---CCCCCCCCCCHHHHH
Q ss_conf 98118---998876687826899
Q 003611 565 GHKIG---SPNPLFKELKDDEVE 584 (807)
Q Consensus 565 g~~i~---~~~~LF~kie~~~i~ 584 (807)
|++|+ ++++||+||++++++
T Consensus 518 g~~i~~~~~~~~LF~kie~e~~e 540 (542)
T 3u1f_A 518 GTRLGPAVEGEVLFSKRSTENTK 540 (542)
T ss_dssp TCBCCCCCTTCCSSCCCCCCC--
T ss_pred CCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 89867767778773888723433
No 4
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=1.00 E-value=1 Score=892.04 Aligned_cols=521 Identities=21% Similarity=0.356 Sum_probs=468.0
Q ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99992999908999999242317634535999999999988991557449631507999999981999999999999999
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (807)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~ 98 (807)
.+++++|||+|+|||||+|||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++++++.|
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~-~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~ 101 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYS-TLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEF 101 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHH-HHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 57997899699888999988455588-99999999999973994798457588884788899986999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99996548323434578986689999999998986797564004541038989533554013447898777778778300
Q 003611 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQC 178 (807)
Q Consensus 99 ~~~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~gd~c 178 (807)
++++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+++|||+.|++|++|+++.+.|+. +|+.|
T Consensus 102 ~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~--------~g~~c 173 (564)
T 3kfl_A 102 KQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR--------DGKPC 173 (564)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECT--------TSCEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHHCCCCCC--------CCCEE
T ss_conf 9999982998771465798889999999999999789989864458763886877777985057677--------89970
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE-
Q ss_conf 0048877754467984566899509954066558260039999999980878998885799999999872866401110-
Q 003611 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR- 257 (807)
Q Consensus 179 e~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR- 257 (807)
.. +.+||++++.+.++||||+|++++++|.+|+++++.+ .+|...++.+.+|+++||+||||||
T Consensus 174 ~~--------------~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~wl~~gl~D~~ISR~ 238 (564)
T 3kfl_A 174 KV--------------SLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNC-IVPEFRRREVIKTVEKGLFDLSISRK 238 (564)
T ss_dssp EE--------------ETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHHCCCCEECEEE
T ss_pred CC--------------CCCCCCCCEEEECCEEEEEHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 12--------------0599992179732606878799899999999838876-18999999999998579977301075
Q ss_pred ---CCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCH---H------H--HHHCCCCCCCCEEEEEEECCCCCHHCH
Q ss_conf ---2588974475456896799986155201120368943---6------7--641189998514999972155400315
Q 003611 258 ---DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN---E------W--EQWWKNPENVELYQFMGKDNVPFHTVM 323 (807)
Q Consensus 258 ---~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~---~------~--~~~W~~~~d~~~i~~iGkDi~~fH~i~ 323 (807)
+++||||||.+ +++|+||||||+++|++++..|+. + | ++||+ +| +|++||||++||+++
T Consensus 239 ~~~~~~WGipiP~~--~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp--~d---v~~~GkDii~FH~~~ 311 (564)
T 3kfl_A 239 RESVMNWSIPVPGD--ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWP--AD---VHVVGKDILKFHAIY 311 (564)
T ss_dssp GGGGTTCSCEETTE--EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCS--CS---EEEEEGGGHHHHHTH
T ss_pred CCCCCCCCEECCCC--CCCEEEEECCCCHHHHHHHCCCCCCCCCCCCHHCCHHHHCCC--CC---EEEEEECCCCHHHHH
T ss_conf 88888877255899--997899930686878987071635565432011030431586--51---599840400119999
Q ss_pred HHHHHHHCCCCCCCCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98973207998456708996110314898443246875593555412999425889987149987785434999998886
Q 003611 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403 (807)
Q Consensus 324 ~pa~l~a~~~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n 403 (807)
||++|+++|. ++|+++++||||+.+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++|+++.+..++|
T Consensus 312 wpa~L~a~g~--~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~-~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n 388 (564)
T 3kfl_A 312 WPAFLMSAEL--PLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAK-EFGIDALKYFLMRESNFQDDGDYSDKNMVARLN 388 (564)
T ss_dssp HHHHHHHTTC--CCCSCEEEECCEEETTEECCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHH
T ss_pred HHHHHHHCCC--CCCCEEEECCCEEECCCCCCCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999996799--9886798715384088035656988789899998-759199999999749965687779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999995709999999986789898788589999999999999999999972129999999999999987
Q 003611 404 NELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGN 483 (807)
Q Consensus 404 ~~l~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N 483 (807)
++|++++||+++|+++++.. +++.+|... ...+.|+++++.+..+.+.+.++|++++++.|++.+++|++.+|
T Consensus 389 ~~l~~~l~N~~~R~~~~~~~-----~~g~~p~~~--~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n 461 (564)
T 3kfl_A 389 GELADTLGNLVSRCVAPKIN-----VNGMWPEPA--EYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLN 461 (564)
T ss_dssp HTTTTTHHHHHHHHHCTTTS-----TTSBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----CCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999995-----388678877--78877999999999999999999872469999999999999999
Q ss_pred HHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98874110100269957799999999999999998501612289999999809997544544554576432368776789
Q 003611 484 AYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIP 563 (807)
Q Consensus 484 ~yi~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~ 563 (807)
+|++..+||.+.+++..++.+++++++++++.+++||+||||++|++||++||++......|.+ ..++.++
T Consensus 462 ~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~~~~~~~~~---------~~~~~~~ 532 (564)
T 3kfl_A 462 AYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMEN---------YLFGIVK 532 (564)
T ss_dssp HHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGSSSGGG---------SSSCCSC
T ss_pred HHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH---------HHCCCCC
T ss_conf 9998528742205899999999999999999999999727549999999980898301269767---------2035689
Q ss_pred CCCCCCCC---CCCCCCCCHHHHHHHHHH
Q ss_conf 99811899---887668782689999966
Q 003611 564 AGHKIGSP---NPLFKELKDDEVEFFRSK 589 (807)
Q Consensus 564 ~g~~i~~~---~~LF~kie~~~i~~~~~~ 589 (807)
+|++|+++ +|||+||+++++++++.+
T Consensus 533 ~g~~~~~~~~~~~lf~r~~~~~~~~~~~~ 561 (564)
T 3kfl_A 533 PGTKIAGLAEGQVVFQKVTLPTEEGERSS 561 (564)
T ss_dssp TTCBCCCCCTTCCSSCCCCCC--------
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 98980898778888289895211265534
No 5
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=1.00 E-value=1 Score=842.33 Aligned_cols=509 Identities=24% Similarity=0.432 Sum_probs=458.6
Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99929999089999992423176345359999999999889915574496315079999999819999999999999999
Q 003611 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHK 99 (807)
Q Consensus 20 g~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~~ 99 (807)
+++++|||+|+|||||++||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|++++++++..|+
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~-~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~ 101 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYE-LIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFR 101 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 8998899589888999967224388-999999999999659967984686986659999999859999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99965483234345789866899999999989867975640045410389895335540134478987777787783000
Q 003611 100 DVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE 179 (807)
Q Consensus 100 ~~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~gd~ce 179 (807)
+++++|||++|.|+||+++.|...++++|.+|.++|+||++.+.+|||++|++|++|+++... ..|+
T Consensus 102 ~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~----------~~g~--- 168 (536)
T 4dlp_A 102 RMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR----------ADGV--- 168 (536)
T ss_dssp HHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC----------TTSC---
T ss_pred HHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCCCCCCCHHHHHCC----------CCCC---
T ss_conf 999982997882314898789999999999999789989832136525875766578984048----------8988---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEC-
Q ss_conf 0488777544679845668995099540665582600399999999808789988857999999998728664011102-
Q 003611 180 NCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD- 258 (807)
Q Consensus 180 ~cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~- 258 (807)
.|++||++++.+.++||||+|++++++|.+++++.+.. .+|....+.+.+|++++++||||||+
T Consensus 169 --------------~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-i~P~~~~~~~~~~l~~~l~D~~ISR~~ 233 (536)
T 4dlp_A 169 --------------RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGF-IMPAERRNEIVSFVKSGLKDLSISRTT 233 (536)
T ss_dssp --------------EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTS-EESHHHHHHHHHHHHTCCCCEECEEC-
T ss_pred --------------CCCCCCCCCEEEECCCEEEECHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf --------------63688980369732634874388899999999838876-596899999999985678866774688
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCC---HHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHCCCCC
Q ss_conf 58897447545689679998615520112036894---367641189998514999972155400315989732079984
Q 003611 259 LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (807)
Q Consensus 259 ~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~---~~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~pa~l~a~~~~~ 335 (807)
+.||||+|.+ +++++||||||+++|++.+ +|+ .+|+.||+ .| +|++|+||++||+++||++++++|.
T Consensus 234 ~~WGipiP~~--~~~v~yvWfda~~~y~s~~-~~~~~~~~~~~~~p--~d---v~~~G~D~~~fh~~~~~a~l~a~g~-- 303 (536)
T 4dlp_A 234 FDWGIPVPGD--EKHVMYVWVDALTNYITAL-GYPDTTDERWAYWP--AN---AHIIGKDISRFHAVYWPAFLMSAQL-- 303 (536)
T ss_dssp -CCSCBCTTC--TTSEECHHHHHHHHHHHTT-TTTCTTSGGGGGCS--CS---EEEEEGGGHHHHHTHHHHHHHHTTC--
T ss_pred CCCCEECCCC--CCCCEEEEECCCHHHHHHC-CCCCCCHHHHHHCC--CC---EEEEECHHHHHHHHHHHHHHHHCCC--
T ss_conf 7278367888--8886588647858878764-89877537886187--60---6995132877789999999997799--
Q ss_pred CCCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56708996110314898443246875593555412999425889987149987785434999998886899999999999
Q 003611 336 TLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFIN 415 (807)
Q Consensus 336 ~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~lgNl~~ 415 (807)
++|+++++|||++.+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+++.+..++|++|++++||+++
T Consensus 304 ~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~-~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~ 382 (536)
T 4dlp_A 304 PLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVE-RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQ 382 (536)
T ss_dssp CCCSCEEEECCEEC------------CCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCCEEEEEEEEEECCCEECCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9982898640386277451552888789899998-859689999998469987888779999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHC
Q ss_conf 99995709999999986789898788589999999999999999999972129999999999999987988741101002
Q 003611 416 RVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLY 495 (807)
Q Consensus 416 R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pW~l~ 495 (807)
|+++++.+ ++++.+|... ...+.|++++..+..+.+.+.++|++++++.+++.+++|+..+|+|++..+||.+.
T Consensus 383 R~~~~~~~----~~~~~~p~~~--~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~ 456 (536)
T 4dlp_A 383 RSLSMIAK----NCEGKVPQPG--AFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALR 456 (536)
T ss_dssp HHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHH----HCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 99999986----2378778866--68877899999999999999999974689999999999999999999837863212
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 69957799999999999999998501612289999999809997544544554576432368776789998118998876
Q 003611 496 KEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLF 575 (807)
Q Consensus 496 k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~LF 575 (807)
+++..++.+++++++++++.+++||+||||++|++||++||+++... .|.+ . ..| .+++|++|++++|||
T Consensus 457 ~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~~~~~-~~~~-------~-~~~-~~~~g~~~~~~~~lf 526 (536)
T 4dlp_A 457 KTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVPADKR-QFAD-------V-LAS-PLAGGTDLPAPQPVF 526 (536)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCCTTSC-STHH-------H-HHC-CCCTTCBCCCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC-CHHH-------H-HHC-CCCCCCCCCCCCCCC
T ss_conf 79999999999999999999999842824689999999739995536-7777-------5-203-589989868998788
Q ss_pred CCCCHHHHH
Q ss_conf 687826899
Q 003611 576 KELKDDEVE 584 (807)
Q Consensus 576 ~kie~~~i~ 584 (807)
+||++++.+
T Consensus 527 ~ri~~~~~~ 535 (536)
T 4dlp_A 527 PRYVEADEQ 535 (536)
T ss_dssp CCCC-----
T ss_pred CCCCCCCCC
T ss_conf 889976567
No 6
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=1.00 E-value=1 Score=794.06 Aligned_cols=505 Identities=27% Similarity=0.449 Sum_probs=448.0
Q ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99992999908999999242317634535999999999988991557449631507999999981999999999999999
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIH 98 (807)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~ 98 (807)
.|++.++||||+|||||++||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++|+++...|
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~-~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYE-YIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 89889899618989999734044587-89999999999836980055577086648999999986999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 99996548323434578986689999999998986797564004541038989533554013-44789877777877830
Q 003611 99 KDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE-GTCPFEGCNYESARGDQ 177 (807)
Q Consensus 99 ~~~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~-g~cP~~~Cg~~~~~gd~ 177 (807)
++++++|||++|.|+||+++.|.+.++++|.+|+++|+||++.+.+|||++|++|+++.+|. |+ |
T Consensus 88 ~~~~~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~-----~--------- 153 (524)
T 2x1l_A 88 QRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQP-----D--------- 153 (524)
T ss_dssp HHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECT-----T---------
T ss_pred HHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCHHHHCCCC-----C---------
T ss_conf 99999809827878126988899999999999997899796214641367547551688840688-----8---------
Q ss_pred HHCCCCCCCCCCCCCCCCC-CCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0004887775446798456-689950995406655826003999999998087899888579999999987286640111
Q 003611 178 CENCGKLLNATDLKDPKCK-VCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCIT 256 (807)
Q Consensus 178 ce~cG~~l~~~el~~p~c~-~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~IS 256 (807)
| +.|+ +||++++.+.++||||++++|++++.+++++.+.. .+|...++...+|+.++++|||||
T Consensus 154 ----G----------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~-i~p~~~~~~~~~~~~~~l~Dw~iS 218 (524)
T 2x1l_A 154 ----G----------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEF-IGPDARRNEIVSFVSGGLKDLSIS 218 (524)
T ss_dssp ----S----------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGG-EESHHHHHHHHHHHTTCCCCEECE
T ss_pred ----C----------CCCCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHHCCCE-ECCHHHHHHHHHHHHCCCCCCCEE
T ss_conf ----9----------9561103991638733776865799999999999849980-487889999999987699631107
Q ss_pred ECC-CCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCH----HHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHC
Q ss_conf 025-88974475456896799986155201120368943----6764118999851499997215540031598973207
Q 003611 257 RDL-KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN----EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331 (807)
Q Consensus 257 R~~-~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~----~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~pa~l~a~ 331 (807)
|++ .||+|+|.+ +++++|||||++++|++.. +|+. .++.|| |.| +|++|+||++||+++|||+++++
T Consensus 219 Rqr~~WG~~iP~~--~~~~~yvWfds~~~~~~~~-g~p~~~~~~~~~~~--p~d---i~~~G~D~~~fh~~~~~a~l~~~ 290 (524)
T 2x1l_A 219 RTTFDWGVPVPDH--PDHVMYVWVDALTNYLTGV-GFPDTESESFRRYW--PAD---LHMIGKDIIRFHTVYWPAFLMSA 290 (524)
T ss_dssp ESSCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTCTTSHHHHHHC--SCS---EEEEEGGGHHHHHTHHHHHHHHH
T ss_pred CCCCCCCCCCCCC--CCCEEEEECCCCHHHHHHC-CCCCCCHHHHHHHC--CCE---EEEEEECHHHHHHHHHHHHHHHC
T ss_conf 7898758608999--9987999667866779773-79887617898618--871---79975105575799999999977
Q ss_pred CCCCCCCEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99845670899611031489844324687559355541299942588998714998778543499999888689999999
Q 003611 332 GENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLG 411 (807)
Q Consensus 332 ~~~~~lp~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~lg 411 (807)
|. ++|+++++||||+.+|+|||||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+.+..|++|+++|+
T Consensus 291 g~--~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~ 367 (524)
T 2x1l_A 291 GL--PLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD-TFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELG 367 (524)
T ss_dssp TC--CCCSCEEEECCEEECSCSEETTTEESSCHHHHHH-HHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCH
T ss_pred CC--CCCCEEEECCEEEECCCCCCCCCCCCCCHHHHHH-HCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99--9884998876797388613775898779899998-76907999999955998889775999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999570999999998678989878858999999999999999999997212999999999999998798874110
Q 003611 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQF 491 (807)
Q Consensus 412 Nl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~p 491 (807)
|+++|+..++.+ ++++.+|... ...+.|++++..+..+...+.++|++++++.|+..+++|++.+|+|++..+|
T Consensus 368 n~~~r~~~~~~~----~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~ 441 (524)
T 2x1l_A 368 NLAQRSLSMVAK----NLGAAVPDPG--EFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEP 441 (524)
T ss_dssp HHHHHHHHHHHH----HSTTBCCCCC--CCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH----HCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999998----6289788865--5666579999999999999999997378999999999999999999984487
Q ss_pred HHHCCC----CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 100269----9577999999999999999985016122899999998099975445445545764323687767899981
Q 003611 492 WKLYKE----DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHK 567 (807)
Q Consensus 492 W~l~k~----~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 567 (807)
|.+.+. +..++.+++++++++++.+++||+||||++|++||++||.+... ..|.+ .. . .+++|++
T Consensus 442 w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~~-~~~~~-------~~--~-~~~~~~~ 510 (524)
T 2x1l_A 442 WVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQPTDE-RDFSA-------IA--N-RIKPGTS 510 (524)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCCTTS-CSGGG-------GS--S-CCCTTCB
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHH-------HH--H-CCCCCCC
T ss_conf 443157563479999999999999999999999636409999999974999554-65667-------52--1-4789987
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 18998876687826
Q 003611 568 IGSPNPLFKELKDD 581 (807)
Q Consensus 568 i~~~~~LF~kie~~ 581 (807)
|++++|||+||+.+
T Consensus 511 ~~~~~~lf~~~~~~ 524 (524)
T 2x1l_A 511 LPAPSGIFPRYQND 524 (524)
T ss_dssp CCCCCCSSCCCC--
T ss_pred CCCCCCCCCCCCCC
T ss_conf 78998887878999
No 7
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=1.00 E-value=1 Score=773.43 Aligned_cols=493 Identities=25% Similarity=0.446 Sum_probs=438.2
Q ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99299990899999924231763453599999999998899155744963150799999998199999999999999999
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~~~ 100 (807)
++++|||+|+|||||++||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYT-TVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 986899569988889722436788-9999999999980799405315348764999999998599999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 99654832343457898668999999999898679756400454103898953355401344789877777877830000
Q 003611 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 101 ~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~gd~ce~ 180 (807)
++++|||++|.|++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++|++++++
T Consensus 81 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l--------------------- 139 (500)
T 2d5b_A 81 AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL--------------------- 139 (500)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS---------------------
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCHHC---------------------
T ss_conf 99993981788821698889999999999999889979523677027875856671111---------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE---
Q ss_conf 48877754467984566899509954066558260039999999980878998885799999999872866401110---
Q 003611 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR--- 257 (807)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR--- 257 (807)
+++.|++||.+++.+.++||||+++++++++.+++++++.+ ..+...++...+|++++++||||||
T Consensus 140 ----------~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~l~Dw~iSRp~~ 208 (500)
T 2d5b_A 140 ----------VEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDL-IRPEGYRNEVLAMLAEPIGDLSISRPKS 208 (500)
T ss_dssp ----------BTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTS-EESHHHHHHHHHHHTSCCCCEECEEETT
T ss_pred ----------CCCCCCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHCCCE-ECCHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf ----------47837888985159854735888089899999999829871-4878899999999866898754420566
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCH--HHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHCCCCC
Q ss_conf 2588974475456896799986155201120368943--67641189998514999972155400315989732079984
Q 003611 258 DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTN--EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW 335 (807)
Q Consensus 258 ~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~--~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~pa~l~a~~~~~ 335 (807)
+..||+|+|.+ +++++||||||+++|++.. +|+. +++.+|+ .| +|++|+|+++||+++||++++++|.
T Consensus 209 ~~~WG~piP~~--~~~v~~vWfds~~~y~~~~-g~~~~~~~~~~~p--~d---i~~~G~D~~~fh~~~~~a~~~~~g~-- 278 (500)
T 2d5b_A 209 RVPWGIPLPWD--ENHVTFVWFDALLNYVSAL-DYPEGEAYRTFWP--HA---WHLIGKDILKPHAVFWPTMLKAAGI-- 278 (500)
T ss_dssp TCCSSCEETTE--EEEEECHHHHHHTHHHHTT-TTTTCHHHHHHGG--GE---EEEEEGGGHHHHHTHHHHHHHHHTC--
T ss_pred CCCCCCCCCCC--CCCEEEECCCCCHHHHHHC-CCCCCCHHHHCCC--CE---EEEEEECHHHHHHHHHHHHHHHCCC--
T ss_conf 66686145778--9983687120320167772-7988862777099--81---8997402203499999999997699--
Q ss_pred CCCEEEEEECEEEC-CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56708996110314-89844324687559355541299942588998714998778543499999888689999999999
Q 003611 336 TLMKTISVTEYLNY-ESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFI 414 (807)
Q Consensus 336 ~lp~~i~~hg~l~~-~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~lgNl~ 414 (807)
++|+++++|||++. +|+|||||+||+|+|.++++ .||+|++|||+++.+++++|++||++.+.++.|+.|+++++|++
T Consensus 279 ~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~ 357 (500)
T 2d5b_A 279 PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLV 357 (500)
T ss_dssp CCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHH
T ss_pred CCCCEEEECCEEEECCCCCCCCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98828988766881799701665777789899987-66928999999936986568888999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 99999570999999998678989878858999999999999999999997212999999999999998798874110100
Q 003611 415 NRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKL 494 (807)
Q Consensus 415 ~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pW~l 494 (807)
+|+.++..+ .+++.++... +++++..+..+.+.+.++|++++++.|+..+++|++.+|+|++..+||.+
T Consensus 358 ~r~~~~~~~----~~~~~~~~~~-------~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~~ 426 (500)
T 2d5b_A 358 QRTRAMLFR----FAEGRIPEPV-------AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWEL 426 (500)
T ss_dssp HHHHHHHHH----HSTTBCCCCC-------CCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH----HCCCCCCCHH-------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999998----6289999645-------89999999999999999998059999999999999999999884586421
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26995779999999999999999850161228999999980999754454455457643236877678999811899887
Q 003611 495 YKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPL 574 (807)
Q Consensus 495 ~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~L 574 (807)
.+++.+++.+++++++++++.+++||+||||++|++||++||.+. . ..|.+ ...|+.+++|+++++++||
T Consensus 427 ~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~~-~-~~~~~--------~~~~~~~~~~~~~~~~~~l 496 (500)
T 2d5b_A 427 FKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE-E-VRLEE--------AERWGLAEPRPIPEEAPVL 496 (500)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS-S-CCGGG--------GGSSCCSCCCBCCSCCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC-C-CCHHH--------HHHCCCCCCCCCCCCCCCC
T ss_conf 267589999999999999999999860813689999998759974-4-57555--------4220468898877899889
Q ss_pred CCCC
Q ss_conf 6687
Q 003611 575 FKEL 578 (807)
Q Consensus 575 F~ki 578 (807)
|+||
T Consensus 497 f~~~ 500 (500)
T 2d5b_A 497 FPKK 500 (500)
T ss_dssp SCCC
T ss_pred CCCC
T ss_conf 7899
No 8
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=1.00 E-value=1 Score=766.38 Aligned_cols=490 Identities=28% Similarity=0.462 Sum_probs=434.0
Q ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99299990899999924231763453599999999998899155744963150799999998199999999999999999
Q 003611 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKD 100 (807)
Q Consensus 21 ~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~g~~p~e~~d~~~~~~~~ 100 (807)
++++|||+|+|||||.+||||+++ ++.+|+++||+|++|++|.|++|+|+||+||+.+|+++|++|+++++++.+.|++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~-~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYT-TIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHH-HHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 996899608988988601536898-9999999999984699346426607871999999998699999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 99654832343457898668999999999898679756400454103898953355401344789877777877830000
Q 003611 101 VYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCEN 180 (807)
Q Consensus 101 ~~~~l~I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V~g~cP~~~Cg~~~~~gd~ce~ 180 (807)
++++|||++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++|++++++..
T Consensus 83 ~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~------------------- 143 (497)
T 2csx_A 83 LWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE------------------- 143 (497)
T ss_dssp HHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------------------
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCEECCHHHHCC-------------------
T ss_conf 9999388678781179988999999999999978898853622103764382756788444-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE---
Q ss_conf 48877754467984566899509954066558260039999999980878998885799999999872866401110---
Q 003611 181 CGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITR--- 257 (807)
Q Consensus 181 cG~~l~~~el~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR--- 257 (807)
.+.|++||.+++.+.++||||+|+++++++.+++++++.. ..+....+...+|++++++||||||
T Consensus 144 -----------~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~l~~~~~Dw~isR~~~ 211 (497)
T 2csx_A 144 -----------DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEF-IQPDYRRNEIISFVKQGLKDLSVTRPRS 211 (497)
T ss_dssp -------------------------CCEEEEECTTSSHHHHHHHHHHCTTS-BCSHHHHHHHHHHHHHCCCCEECEEETT
T ss_pred -----------CCCCCCCCCCCEEEECCCEEEECHHHHHHHHHHHHHCCCE-ECCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf -----------8988777998729735766898478799999999839974-3767899999999966886655336688
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCHHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHCCCCCCC
Q ss_conf 25889744754568967999861552011203689436764118999851499997215540031598973207998456
Q 003611 258 DLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTL 337 (807)
Q Consensus 258 ~~~WGipvP~~~~~~~viyVWfDA~~~Yis~~~~~~~~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~pa~l~a~~~~~~l 337 (807)
+.+||+|+|.+ +++++||||||+++|+|++.. ....+| |.| +|++|+|+++||+++||++++++|. ++
T Consensus 212 ~~~WG~~iP~~--~~~~i~vW~ds~~~~~s~~~~---~~~~~~--p~d---i~~~G~D~~~~H~~~~~a~l~~~g~--~~ 279 (497)
T 2csx_A 212 RVKWGIPVPFD--PEHTIYVWFDALFNYISALED---KVEIYW--PAD---LHLVGKDILRFHTVYWPAFLMSLGY--EL 279 (497)
T ss_dssp TCCSSEEETTE--EEEEECSHHHHHTHHHHTTTT---THHHHC--SCS---CEEEEGGGHHHHHTHHHHHHHHHTC--CC
T ss_pred CCCCCEECCCC--CCCEEEEECCCCHHHCCCCCC---CCHHHC--CCE---EEEEECCHHHHHHHHHHHHHHHCCC--CC
T ss_conf 77875015899--996699953466544136788---603309--963---8995034667489999999997699--98
Q ss_pred CEEEEEECEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 70899611031489844324687559355541299942588998714998778543499999888689999999999999
Q 003611 338 MKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRV 417 (807)
Q Consensus 338 p~~i~~hg~l~~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~lgNl~~R~ 417 (807)
|+++++|||++.+|+|||||+||+|+|.++++ +||+|++|||+++.+++++|++||++.+..+.|++|+++++|+++|+
T Consensus 280 ~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~ 358 (497)
T 2csx_A 280 PKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRV 358 (497)
T ss_dssp CSCEEEECCEESSSSBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CCEEEECCEEEECCCEECCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 81998875797578524774888779899998-77918999999934996569978967888898899999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
Q ss_conf 99570999999998678989878858999999999999999999997212999999999999998798874110100269
Q 003611 418 LSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKE 497 (807)
Q Consensus 418 ~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~pW~l~k~ 497 (807)
.+++.+ .+++.++. +.|++++..+..+.+.+.++|++++++.|+..+++|++.+|+|++..+||.+.++
T Consensus 359 ~~~~~~----~~~~~~~~-------~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~k~~~~~~~ 427 (497)
T 2csx_A 359 VNMAHK----FLGGEVSG-------ARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSYLNKYVDEKQPWALNKE 427 (497)
T ss_dssp HHHHHH----HSTTCBCC-------CCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTT
T ss_pred HHHHHH----HCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
T ss_conf 999998----63788994-------6679999999999999999998358999999999999999999984575342045
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -9577999999999999999985016122899999998099975445445545764323687767899981189988766
Q 003611 498 -DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576 (807)
Q Consensus 498 -~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~i~~~~~LF~ 576 (807)
++.++.+++++++++++.+++||+||||++|++||++||.+.. .|.+ ..|+.+ |++|++++|||+
T Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~~~---~~~~---------~~~~~~--~~~~~~~~~lf~ 493 (497)
T 2csx_A 428 RKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEF---LKEL---------KPYSKN--TYKLGERKILFP 493 (497)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCSCC---CSSC---------CSCCCS--CBCCCCCCCSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC---CHHH---------CCCCCC--CCCCCCCCCCCC
T ss_conf 34999999999999999999998608038999999997399855---4344---------013547--875788888879
Q ss_pred CCCH
Q ss_conf 8782
Q 003611 577 ELKD 580 (807)
Q Consensus 577 kie~ 580 (807)
||+.
T Consensus 494 ~~~~ 497 (497)
T 2csx_A 494 KREG 497 (497)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 9998
No 9
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=1.00 E-value=1 Score=728.21 Aligned_cols=496 Identities=20% Similarity=0.275 Sum_probs=400.5
Q ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC-CCC-----------
Q ss_conf 99992999908999999242317634535999999999988991557449631507999999981-999-----------
Q 003611 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCS----------- 86 (807)
Q Consensus 19 ~g~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~~-g~~----------- 86 (807)
.++++|+|++|+|||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+.+|+++ |++
T Consensus 35 ~~~~~f~i~~~pPy~nG~lHiGH~~~~-~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~ 113 (821)
T 1ile_A 35 KGGPRYTVYEGPPTANGLPHVGHAQAR-SYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIE 113 (821)
T ss_dssp TTSCBCCBCCCCCCTTSCCCTTHHHHH-HHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCHH
T ss_conf 899968995289999998704455737-9999999999956994034364367786579999998462555207655999
Q ss_pred -----HHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf -----99999999999999996548--32343457898668999999999898679756400454103898953355401
Q 003611 87 -----PKEICDKYHVIHKDVYKWFD--ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLV 159 (807)
Q Consensus 87 -----p~e~~d~~~~~~~~~~~~l~--I~~D~f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~~l~d~~V 159 (807)
++++++++.+.+++++++|| +.+|++++|+++.|.+.+|++|.+|+++|+||++.++++|||.|+++|+|++|
T Consensus 114 ~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev 193 (821)
T 1ile_A 114 RFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193 (821)
T ss_dssp HHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCEEECCHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCCCCCHHHH
T ss_conf 99999999999999999999998287571579858789899999999999999869855447425731788976317675
Q ss_pred -CCC----------------------------------------------------------------------------
Q ss_conf -344----------------------------------------------------------------------------
Q 003611 160 -EGT---------------------------------------------------------------------------- 162 (807)
Q Consensus 160 -~g~---------------------------------------------------------------------------- 162 (807)
+|.
T Consensus 194 ~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~ 273 (821)
T 1ile_A 194 ALGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGT 273 (821)
T ss_dssp HHTEEEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTS
T ss_pred HCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCHHHHHCEEEEECCCCCEEEEECCCCEEEEHHHHHHHHHHHCC
T ss_conf 15720466845999998358766678898899994997214345799998997156787179479862899999984085
Q ss_pred -----------------------------------------------CCCCCCCCCCCC---------CCCHHCCCCCCC
Q ss_conf -----------------------------------------------789877777877---------830000488777
Q 003611 163 -----------------------------------------------CPFEGCNYESAR---------GDQCENCGKLLN 186 (807)
Q Consensus 163 -----------------------------------------------cP~~~Cg~~~~~---------gd~ce~cG~~l~ 186 (807)
||. ||.++.. -..|+.||++.+
T Consensus 274 ~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~id~~G~~~~ 351 (821)
T 1ile_A 274 QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPA--FGAEDLETARVYGLPLLKTVDEEGKLLV 351 (821)
T ss_dssp CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTT--SCHHHHHHHHHTTCCCCCCBCTTSBBCS
T ss_pred EEEEEECHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEECCC--CCHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 89887506874598898677666898779985471866889764474477--9878999999859983204789973733
Q ss_pred C---------------CCC--------------CCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 5---------------446--------------79845668995099540665582600399999999808789988857
Q 003611 187 A---------------TDL--------------KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN 237 (807)
Q Consensus 187 ~---------------~el--------------~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 237 (807)
. .+| ..|+|||||++++++.++||||+++++++++++++++..+.|.+..
T Consensus 352 ~~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~- 430 (821)
T 1ile_A 352 EPFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIK- 430 (821)
T ss_dssp GGGTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGT-
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCEECCCCCEEEEEECCHHHHCHHHHHHHHHHHHCCEEEECCHHH-
T ss_conf 6768979899889999999967991300023125877468899799983551552669999999997568189783446-
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC----------------------------------------------
Q ss_conf 9999999987286640111025889744754568----------------------------------------------
Q 003611 238 AIQATHAWLKEGLKVRCITRDLKWGVPVPLERFK---------------------------------------------- 271 (807)
Q Consensus 238 ~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~~---------------------------------------------- 271 (807)
.+...+||. +|+|||||||+.||+|+|.+.++
T Consensus 431 -~~~~~~~l~-~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~ 508 (821)
T 1ile_A 431 -EGRYGEWLK-NLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTM 508 (821)
T ss_dssp -TTTTHHHHH-TCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEE
T ss_pred -HHHHHHHHH-CCCHHEECCCCCCCCEEEEEEECCCCCEEEECCHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCH
T ss_conf -769999983-771310004677788231899659996785275999975055666212220431001233578899763
Q ss_pred ---CCEEEEEECCCCHHHHCCCCCC----HHHHHHCCCCCCCCEEEEEEECCCCCHHCHHHHHHHHC-CCCCCCCEEEEE
Q ss_conf ---9679998615520112036894----36764118999851499997215540031598973207-998456708996
Q 003611 272 ---EKVFYVWFDAPIGYVSITSCYT----NEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT-GENWTLMKTISV 343 (807)
Q Consensus 272 ---~~viyVWfDA~~~Yis~~~~~~----~~~~~~W~~~~d~~~i~~iGkDi~~fH~i~~pa~l~a~-~~~~~lp~~i~~ 343 (807)
.+|+|||||+.+.|++.. +|+ +.|+.|| |+| +|+.|+|+++||.....++..++ +. .+++++++
T Consensus 509 ~r~~dvld~WfdS~~~~~~~~-~~p~~~~~~f~~~~--P~d---l~~~G~D~~r~w~~~~~~~~~~~~~~--~pf~~v~~ 580 (821)
T 1ile_A 509 RRVPYVIDVWYDSGAMPFASL-HYPFEHEEVFRESF--PAD---FIAEGIDQTRGWFNSLHQLGVMLFGS--IAFKNVIC 580 (821)
T ss_dssp EECSCBCCHHHHHHHHHHHTT-TTTTSCHHHHHHHS--SBS---BEEEEGGGGGTHHHHHHHHHHHHHSS--CSBSEEEE
T ss_pred HHCCCCCCEECCCCCCHHHHC-CCCCCCHHHHHHCC--CCC---CCCCHHHHHCCHHHHHHHHHHHHCCC--CCCCEEEE
T ss_conf 216530001323661247650-89854667785338--861---00330656601999999989986298--77655999
Q ss_pred ECEEE-CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11031-48984432468755935554129994258899871499877854349999988868999999999999999570
Q 003611 344 TEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIA 422 (807)
Q Consensus 344 hg~l~-~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs~~~l~~~~n~~l~~~lgNl~~R~~~~~~ 422 (807)
|||++ .+|+|||||+||+|+|.++++ .||+|++||||++.+++++|++||++.+..++ ++++++|+|+++|+..+..
T Consensus 581 hg~vl~~~G~KMSKS~GNvV~p~dli~-~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~-~~~~~kl~N~~~~~~~~~~ 658 (821)
T 1ile_A 581 HGLILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYAN 658 (821)
T ss_dssp ECCEECTTSSCCCTTTTCCCCHHHHHT-TTCHHHHHHHHHHHSCSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHH-HHCHHHHHHHHHHCCCCCCCCEECHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_conf 800998999877765788999999998-72979999999837898888575499987999-9999999999999998511
Q ss_pred CCCCCCCCCCCC-CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHC--CHHHCC
Q ss_conf 999999998678-98-9878858999999999999999999997212999999999999--99879887411--010026
Q 003611 423 KPPGQGYGSIVP-DA-NGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQ--FWKLYK 496 (807)
Q Consensus 423 k~~~~~~~g~ip-~~-~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~i~~l~--~~~N~yi~~~~--pW~l~k 496 (807)
. ++..| .. ........|+++++.+..+...+.++|++++++.|+..+++|+ ..+|.|++..+ +|...+
T Consensus 659 ~------~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~ 732 (821)
T 1ile_A 659 L------DRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNED 732 (821)
T ss_dssp H------HCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTT
T ss_pred C------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 1------3688533334333888899999999999999999997668999999999999999999999985211025777
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 995779999999999999999850161228999999980999
Q 003611 497 EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQ 538 (807)
Q Consensus 497 ~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~~ 538 (807)
+ ..+ .+++.++.++++.+++||+||||++|++||++|+..
T Consensus 733 ~-~~r-~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~ 772 (821)
T 1ile_A 733 A-LDR-EAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRS 772 (821)
T ss_dssp T-SST-THHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTT
T ss_pred C-HHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 6-778-999999999999999870886665799999866333
No 10
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=1.00 E-value=1 Score=710.74 Aligned_cols=494 Identities=19% Similarity=0.243 Sum_probs=403.2
Q ss_pred CCCCCC--CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH----CCCC
Q ss_conf 999999--9999299990899999924231763453599999999998899155744963150799999998----1999
Q 003611 13 PPKLPI--PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAME----DNCS 86 (807)
Q Consensus 13 ~~~~~~--~g~~~~~it~~~Py~Ng~~HiGH~~~~~i~aDv~aR~~r~~G~~v~~v~GtD~hG~~I~~~A~~----~g~~ 86 (807)
..|.+. .++++|+|++|||||||.|||||+++. +.+|+++||+||+|++|+|++|||+||+||+.++++ +|++
T Consensus 23 ~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~-~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~ 101 (862)
T 1gax_A 23 NPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDN-SLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKT 101 (862)
T ss_dssp SCCCCCTTCCSCEEEEECCCCBSSSCCCHHHHHHH-HHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 77756767899818997489999898663466888-99999999999479950245652877719999999999874999
Q ss_pred HH------------HHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf 99------------99999999999999654832343--45789866899999999989867975640045410389895
Q 003611 87 PK------------EICDKYHVIHKDVYKWFDISFDN--FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKR 152 (807)
Q Consensus 87 p~------------e~~d~~~~~~~~~~~~l~I~~D~--f~rT~~~~h~~~v~~~f~~L~~~G~Iy~~~~~~~y~~~~~~ 152 (807)
|+ +++++++..++++|++||+++|. .+.|+++.|.+.|+++|.+|+++|+||++.+.++|||.|++
T Consensus 102 ~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T 181 (862)
T 1gax_A 102 RHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181 (862)
T ss_dssp CSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTE
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCC
T ss_conf 68839999999999999999999999999828503578982169889999999999999877988832413663787585
Q ss_pred CCCCCCCC-----C------------------------------------------------CCCCCCCCC---------
Q ss_conf 33554013-----4------------------------------------------------478987777---------
Q 003611 153 FLADRLVE-----G------------------------------------------------TCPFEGCNY--------- 170 (807)
Q Consensus 153 ~l~d~~V~-----g------------------------------------------------~cP~~~Cg~--------- 170 (807)
+|+|.+|+ | .||. |+.
T Consensus 182 ~Lsd~EV~~~e~~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~--~~~~ipii~~~~ 259 (862)
T 1gax_A 182 TLSDLEVETEPTPGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPL--TEVWIPILADPA 259 (862)
T ss_dssp EECGGGEEECCEEEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTT--CCCBCCEEECTT
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCHHHHHCCCEEECCC--CCCEEEEEECCC
T ss_conf 556522334455653899999946997799995885534513589989986078887597897888--898336970452
Q ss_pred ----------------------------------CCCCCCCHHCC--CCC------------------------CCCCCC
Q ss_conf ----------------------------------78778300004--887------------------------775446
Q 003611 171 ----------------------------------ESARGDQCENC--GKL------------------------LNATDL 190 (807)
Q Consensus 171 ----------------------------------~~~~gd~ce~c--G~~------------------------l~~~el 190 (807)
-+..|..|++| |.. ..+.++
T Consensus 260 V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h 339 (862)
T 1gax_A 260 VEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTI 339 (862)
T ss_dssp CCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 12688976258557888237999998399864335798704235677554896999999999999986798454234446
Q ss_pred CCCCCCCCCCCEEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 79845668995099540665582600399999999808789988857999999998728664011102588974475456
Q 003611 191 KDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERF 270 (807)
Q Consensus 191 ~~p~c~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~d~~ISR~~~WGipvP~~~~ 270 (807)
..|+|+|||++++.+.++|||++++++++++++++++... ..+|.+..+...+||. +++|||||||+.||+|+|.|.+
T Consensus 340 ~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~-~~~P~~~~~~~~~wl~-~l~DW~ISRqr~WG~pIP~w~~ 417 (862)
T 1gax_A 340 ALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI-AFVPERWKKVNMDWLE-NVKDWNISRQLWWGHQIPAWYC 417 (862)
T ss_dssp CCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCC-EESSSHHHHHHHHHHH-TCCCCCCBCCCSSSCCCCCEEE
T ss_pred CCCEECCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCC-EECCHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCEEC
T ss_conf 5872058897689995152798869999999999970995-6717899999999972-6656367535678755684345
Q ss_pred CC-CEEEE------------------------------EECCCCHHHHCCCCCC---HHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 89-67999------------------------------8615520112036894---36764118999851499997215
Q 003611 271 KE-KVFYV------------------------------WFDAPIGYVSITSCYT---NEWEQWWKNPENVELYQFMGKDN 316 (807)
Q Consensus 271 ~~-~viyV------------------------------WfDA~~~Yis~~~~~~---~~~~~~W~~~~d~~~i~~iGkDi 316 (807)
++ .++|| |||+...|++.. +|+ ++++.|| |.| +++.|+||
T Consensus 418 ~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~-~~p~~~~~~~~~~--P~d---~~v~G~Di 491 (862)
T 1gax_A 418 EDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTL-GWPEETEDLKAFY--PGD---VLVTGYDI 491 (862)
T ss_dssp TTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGG-TTTSCCHHHHHSC--SBS---CEEEEGGG
T ss_pred CCCCEEEEECCCCCCCCCHHHHHCCCHHEECCCCCCCEEECCCCCCHHHC-CCCCCHHHHHHHC--CCE---EEECCCCC
T ss_conf 89998997121103555502344482110247764562100577502211-6887658898419--953---89627302
Q ss_pred CCCHHCHHHHHHHH-CCCCCCCCEEEEEECEEE-CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 54003159897320-799845670899611031-4898443246875593555412999425889987149987785434
Q 003611 317 VPFHTVMFPSTLLG-TGENWTLMKTISVTEYLN-YESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFT 394 (807)
Q Consensus 317 ~~fH~i~~pa~l~a-~~~~~~lp~~i~~hg~l~-~~G~KMSKS~Gn~I~~~d~l~~~~~~D~lRy~ll~~~~~~~D~~Fs 394 (807)
++||.....++.+. .|. .|++++++||+++ .+|+|||||+||+|+|.++++ .||+|++||||++.++.++|++|+
T Consensus 492 i~~W~a~~~~~~~~~~g~--~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~-~yGaDalR~~ll~~~~~~~D~~fs 568 (862)
T 1gax_A 492 LFLWVSRMEVSGYHFMGE--RPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGGQDIRLD 568 (862)
T ss_dssp TTTTHHHHHHHHHHHSSS--CSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHH-HHCHHHHHHHHHHHCCTTCCEECC
T ss_pred CCCHHHHHHHHHHHHCCC--CCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH-HCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 212999999999986199--96127999446983799776666888789999998-749089999998468777888468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99999888689999999999999995709999999986789898788589999999999999999999972129999999
Q 003611 395 WADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKT 474 (807)
Q Consensus 395 ~~~l~~~~n~~l~~~lgNl~~R~~~~~~k~~~~~~~g~ip~~~~~~~~~~d~~l~~~l~~~~~~~~~~~e~~~~~~al~~ 474 (807)
++.+... ++++++++|+++++...+ ++..|.. ......|+|+++.++.++..+.++|++|+|+.|+..
T Consensus 569 ~~~l~~~--~~f~nkl~N~~rf~~~~~--------~~~~~~~--~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~ 636 (862)
T 1gax_A 569 LRWLEMA--RNFANKLYNAARFVLLSR--------EGFQAKE--DTPTLADRFMRSRLSRGVEEITALYEALDLAQAARE 636 (862)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHS--------SSCCCCB--CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHCC--------CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 8999999--999999999999998602--------5788865--447888999999999999999999972388799999
Q ss_pred HHHHHH--HHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 999999--987988741101002699577999999999999999985016122899999998099
Q 003611 475 AMSISS--EGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNL 537 (807)
Q Consensus 475 i~~l~~--~~N~yi~~~~pW~l~k~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~a~~i~~~Lg~ 537 (807)
+++|+. .+|+|++..+||... + ..+++.++.++++.++.||+||||++|++||+.|+.
T Consensus 637 l~~f~~~~~~n~Yie~~k~~l~~-~----~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~ 696 (862)
T 1gax_A 637 VYELVWSEFCDWYLEAAKPALKA-G----NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG 696 (862)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT-T----BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999887657999870434313-2----899999999999999999703215799999996689
Done!