RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003611
(807 letters)
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 943 bits (2439), Expect = 0.0
Identities = 264/752 (35%), Positives = 401/752 (53%), Gaps = 58/752 (7%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
++TSALPY N H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT +A+
Sbjct: 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL 61
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
++ SP+EI D++H K ++ ISFD FGRT P + Q F K +N L++
Sbjct: 62 KEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+Q YC+ K FL DR V GTCP+ C E +GDQCE CG+ L L +P+C +C
Sbjct: 122 TKQAYCEHDKMFLPDRFVIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
RD+ H ++ + +L+ +I W N +W++EGL+ R ITRDL W
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEK----QPWKPNVKNMVLSWIEEGLEERAITRDLNW 235
Query: 262 GVPVPLER--FKEKVFYVWFDAPIGYVSITSCY------TNEWEQWWKNPE-NVELYQFM 312
G+PVPL+ K KV YVWF+APIGY+SIT + NEW+++W N + + F+
Sbjct: 236 GIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI 295
Query: 313 GKDNVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFG 364
GKDN+PFH + +P+ L+ G+ W L I EYL E KFS S+ ++
Sbjct: 296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 355
Query: 365 NDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKP 424
++ D P + RYYL T PE D+ F+++D + + N EL+NNLGNF++R L+F+ +
Sbjct: 356 HEFLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRY 414
Query: 425 PGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNA 484
+ +VP+ E +L + E++ K ++ E + + K LK MS++S GN
Sbjct: 415 ----FDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNR 468
Query: 485 YLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHIS 544
Y Q WK KED+ + S+ +V L LLEPF+P S ++ LNL K
Sbjct: 469 YFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLDEVKR-- 526
Query: 545 LCDEKGDVDRARRPWEI--IPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAE 602
WE +PAGHK+ P LFK++ DD++ +F + R
Sbjct: 527 --------------WEFRELPAGHKVRKPEILFKKVTDDQIIYFILNYMAKGNPEGARIL 572
Query: 603 AEAAKTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTA----EPEISI---ARLDIRVGK 655
+ E + + G + + + E + A+LD+RVGK
Sbjct: 573 LDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGKEMYVKFDDFAKLDLRVGK 632
Query: 656 ITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGI 715
I +V+ HP+AD LYV ++D+G+ + RT+V+GL K+ EE+ R V V+ NL+P +RGI
Sbjct: 633 IIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGI 691
Query: 716 KSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
S M+L A + +V L+ P K K+G +V
Sbjct: 692 GSQGMLLAADDGE--RVALLMPDKEVKLGAKV 721
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 787 bits (2034), Expect = 0.0
Identities = 144/573 (25%), Positives = 250/573 (43%), Gaps = 45/573 (7%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ IL+T A PY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 17 AKKILVTCASPYANGSIHLGHMLEHI-QADVWVRYQRMRGHEVNFICADDAHGTPIMLKA 75
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++
Sbjct: 76 QQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNR 135
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
T+ Q Y FL DR V+GTCP C GD CE CG + T+L +PK V
Sbjct: 136 TISQLYDPEKGMFLPDRFVKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPKSVVSGA 193
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLK 260
P +RD+ H F DLP+ L+ + + G+ + W + GL+ I+RD
Sbjct: 194 TPVMRDSEHFFFDLPSFSEMLQAWTRS----GALQEQVANKMQEWFESGLQQWDISRDAP 249
Query: 261 WGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGK 314
+ + K FYVW DAPIG + ++ ++++WK ELY F+GK
Sbjct: 250 Y-FGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK 308
Query: 315 DNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPV 374
D V F ++ +P+ L G+ + + V Y+ K SKS+G + + +
Sbjct: 309 DIVYFLSLFWPAMLEGSN--FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDA 365
Query: 375 EVWRYYLLTN-RPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIV 433
+ RYY + D D + N +++N + N +R FI K + ++
Sbjct: 366 DSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK----RFDGVL 421
Query: 434 PDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWK 493
L + E EA E + + ++ M+++ N Y+ E W
Sbjct: 422 ASEL------ADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWV 475
Query: 494 LYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGD 551
+ K++ + + L +L L+P +P + LN +
Sbjct: 476 VAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT-----------ELT 524
Query: 552 VDRARRPWEIIPAGHKIGSPNPLFKELKDDEVE 584
D ++P GHK+ L+ + +VE
Sbjct: 525 WDGIQQP----LLGHKVNPFKALYNRIDMRQVE 553
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 311 bits (800), Expect = 4e-97
Identities = 131/606 (21%), Positives = 232/606 (38%), Gaps = 93/606 (15%)
Query: 1 MGSTGEENPAAPPPKLPIPG---KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCR 57
M + + PG + IT+A+ Y N PH+G+ + D ARF R
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIA-TDAMARFQR 59
Query: 58 LRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTST 117
L G + ++ GTDE+G A ++ +P+++ D+ + + + + S D++ RTS
Sbjct: 60 LNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSE 119
Query: 118 PQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177
+ +A QAI++ ++ N + + Y + + + E
Sbjct: 120 ERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETE----------------- 162
Query: 178 CENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQN 237
+ + + F L A ++KL + N +
Sbjct: 163 ----------VRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN-------NPG 205
Query: 238 AIQATH------AWLKEGLKVRCITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSIT 289
I +++K GLK I+R WG+PVP EK V YVW DA Y++
Sbjct: 206 FIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVP---GDEKHVMYVWVDALTNYITAL 262
Query: 290 SCY---TNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY 346
Y T+E +W P N +GKD FH V +P+ L+ L K + +
Sbjct: 263 G-YPDTTDERWAYW--PANA---HIIGKDISRFHAVYWPAFLMSAQLP--LPKRVFAHGF 314
Query: 347 LNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADL 398
L K SKS G + +G D RY+L+ P D ++ +
Sbjct: 315 LFNRGEKMSKSVGNVIDPFELVERYGLDQ---------LRYFLMREVPFGQDGSYSHEAI 365
Query: 399 QAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQ 458
++N +L N+LGN R LS IAK VP + K + ++ +E
Sbjct: 366 VNRTNADLANDLGNLAQRSLSMIAK----NCEGKVPQPGAFS--EADKAILDQADAALET 419
Query: 459 YLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLAC 518
+AM+ L L ++ +E N Y + W L K D V+ + ++ +
Sbjct: 420 ARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGI 479
Query: 519 LLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKEL 578
+++PF+P + ++ L + + A + G + +P P+F
Sbjct: 480 MVQPFIPQSAEKLLDILAVPAD----------KRQFADVLASPLAGGTDLPAPQPVFPRY 529
Query: 579 KDDEVE 584
+ + +
Sbjct: 530 VEADEQ 535
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 303 bits (779), Expect = 1e-94
Identities = 130/577 (22%), Positives = 224/577 (38%), Gaps = 101/577 (17%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
PK D+ K + I++D+F RT+ + + Q + KK+ + +
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 141 TMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRN 200
+ YC +C+RF + +L + C +
Sbjct: 121 EYEGLYCVSCERFYTE-------------------------------KELVEGLCPIHGR 149
Query: 201 APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKVRC 254
+ R + F + R L+EYI + + I+ A L E +
Sbjct: 150 PVERRKEGNYFFRMEKYRPWLQEYIQE-------NPDLIRPEGYRNEVLAMLAEPIGDLS 202
Query: 255 ITRD---LKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTN--EWEQWWKNPENVEL 308
I+R + WG+P+P + E V +VWFDA + YVS Y + +W P
Sbjct: 203 ISRPKSRVPWGIPLP---WDENHVTFVWFDALLNYVSALD-YPEGEAYRTFW--PHAW-- 254
Query: 309 YQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESG-KFSKSKG-------- 359
+GKD + H V +P+ L G + + ++V +L G K SK+ G
Sbjct: 255 -HLIGKDILKPHAVFWPTMLKAAGI--PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFAL 311
Query: 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLS 419
+ +G DA RYYLL P DT + L+ + +L ++LGN + R +
Sbjct: 312 LEKYGRDA---------LRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRA 362
Query: 420 FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479
+ + +P+ E + + + ++K L+ AM+
Sbjct: 363 MLFRF----AEGRIPEPVAGE-------ELAEGTGLAGRLRPLVRELKFHVALEEAMAYV 411
Query: 480 SEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQP 539
N Y+ E + W+L+K++ V+ V + + + LL P MP E+ + L L+
Sbjct: 412 KALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 471
Query: 540 EKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
E + W + LF
Sbjct: 472 EVRLE----------EAERWGLAEPRPIPEEAPVLFP 498
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 299 bits (769), Expect = 8e-93
Identities = 140/586 (23%), Positives = 218/586 (37%), Gaps = 95/586 (16%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G IT+A+ Y N VPH+G+ + D ARF RL GY+ Y+ GTD +G
Sbjct: 10 GSEPFYITTAIAYPNGVPHIGHAYEYIA-TDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A ++ E+ + + + + + +ISFD F RTS EA +AI+K++ D +
Sbjct: 69 AAKEGIPAAELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYL 128
Query: 140 NTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198
+ + Y +RF + E
Sbjct: 129 DAYKGWYSIRDERFFTENETTEQPDG---------------------------TRIATET 161
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKV 252
+ F L A ++L I +++ GLK
Sbjct: 162 GAPVTWTEEQTYFFRLSAYTDRLLALYEE-------HPEFIGPDARRNEIVSFVSGGLKD 214
Query: 253 RCITR-DLKWGVPVPLERFKEK-VFYVWFDAPIGYVSIT---SCYTNEWEQWWKNPENVE 307
I+R WGVPVP V YVW DA Y++ + + ++W P ++
Sbjct: 215 LSISRTTFDWGVPVP---DHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW--PADL- 268
Query: 308 LYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG-------- 359
+GKD + FHTV +P+ L+ G L K I +L K SKS G
Sbjct: 269 --HMIGKDIIRFHTVYWPAFLMSAGLP--LPKRIFAHGWLLNRGEKMSKSIGNVVDPVNL 324
Query: 360 IGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLS 419
+ FG D RY+LL P D + + + N +L N LGN R LS
Sbjct: 325 VDTFGLDQ---------VRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLS 375
Query: 420 FIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSIS 479
+AK G+ VPD E L +E+ E + + L+ S+
Sbjct: 376 MVAK----NLGAAVPDP--GEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL 429
Query: 480 SEGNAYLQESQFWKLYK----EDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535
N Y + W L K EDQ V+ T++ +V + + LL+P MP + ++ L
Sbjct: 430 GAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLL 489
Query: 536 NLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDD 581
P I G + +P+ +F ++D
Sbjct: 490 GQ-PTDERDFSAI----------ANRIKPGTSLPAPSGIFPRYQND 524
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 301 bits (772), Expect = 9e-93
Identities = 120/622 (19%), Positives = 220/622 (35%), Gaps = 104/622 (16%)
Query: 1 MGSTGEENPAAPPPKLPIPG----KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFC 56
M + + PG ++ T+ + YVN PH+G++ +++ DV R+
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLI-VDVLGRYH 59
Query: 57 RLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTS 116
R++G + GTDE+G A + SP + K ++ + + F RT+
Sbjct: 60 RVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTT 119
Query: 117 TPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARG 175
P + Q I+KKL + + Y + + FL + + +G
Sbjct: 120 NPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR----------- 168
Query: 176 DQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWS 235
+ + + L A R +L +Y ++
Sbjct: 169 ------------DGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHD-------H 209
Query: 236 QNAIQATH------AWLKEGLKVRCITRD----LKWGVPVPLERFKEK-VFYVWFDAPIG 284
N I +++GL I+R + W +PVP E+ YVW DA
Sbjct: 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVP---GDERHCIYVWLDALFN 266
Query: 285 YVS-----------ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGE 333
Y + T + W P +V +GKD + FH + +P+ L+
Sbjct: 267 YYTGALTRVATDGTETLDEDHHALNRW--PADV---HVVGKDILKFHAIYWPAFLMSAEL 321
Query: 334 NWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWRYYLLTNR 385
L + + + + K SKS G FG DA +Y+L+
Sbjct: 322 P--LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDA---------LKYFLMRES 370
Query: 386 PEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLT 445
D ++ ++ A+ N EL + LGN ++R ++ + P+ AE +
Sbjct: 371 NFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKIN-----VNGMWPEP--AEYSESD 423
Query: 446 KTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIV 505
KTL + ++ L + NAY+ E+ WKL K D V
Sbjct: 424 KTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTV 483
Query: 506 MRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAG 565
+ ++ + + L+P MP + E+ L + + + + + I+ G
Sbjct: 484 LYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPEAARVGMENYL---------FGIVKPG 534
Query: 566 HKIGS---PNPLFKELKDDEVE 584
KI +F+++ E
Sbjct: 535 TKIAGLAEGQVVFQKVTLPTEE 556
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 295 bits (757), Expect = 3e-91
Identities = 145/576 (25%), Positives = 237/576 (41%), Gaps = 106/576 (18%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
+ +T+ + YVN+VPHLG+ ++ AD AR+ RLR Y+ ++ GTDE+G + KA
Sbjct: 4 MKKFYVTTPIYYVNDVPHLGHAYTTIA-ADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA 62
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
E SPKE+ D+ K ++++ I + F RT+ P + Q +F++ +
Sbjct: 63 EELGISPKELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLG 122
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ YC C+ F ++ L E D C + +
Sbjct: 123 EYEGWYCVGCEEFKSEAELAE-------------------------------DHTCPIHQ 151
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATH------AWLKEGLKVR 253
+ F L ++KL E + IQ + +++K+GLK
Sbjct: 152 KKCEYIKEPSYFFRLSKYQDKLLELYEK-------NPEFIQPDYRRNEIISFVKQGLKDL 204
Query: 254 CITRD---LKWGVPVPLERFKEK-VFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELY 309
+TR +KWG+PVP F + YVWFDA Y+S ++ E +W P ++
Sbjct: 205 SVTRPRSRVKWGIPVP---FDPEHTIYVWFDALFNYISALE---DKVEIYW--PADL--- 253
Query: 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IG 361
+GKD + FHTV +P+ L+ G L K + + E K SK+ G +
Sbjct: 254 HLVGKDILRFHTVYWPAFLMSLGYE--LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQ 311
Query: 362 VFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFI 421
+G D RY+LL P D F+ + + N EL N +GN +RV++
Sbjct: 312 EYGLDE---------VRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMA 362
Query: 422 AKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSE 481
K G V A E A+ + ++ Y MEKV + ++ + +S
Sbjct: 363 HK----FLGGEVSGARDEE-------YAKIAQESIKNYENYMEKVNFYKAIEEILKFTSY 411
Query: 482 GNAYLQESQFWKLYKEDQPS-CSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPE 540
N Y+ E Q W L KE + V+ V + +L LL P P+ E + L +
Sbjct: 412 LNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEKEF 471
Query: 541 KHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
+ +P+ +K+G LF
Sbjct: 472 ------------LKELKPYS--KNTYKLGERKILFP 493
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 284 bits (729), Expect = 7e-87
Identities = 109/581 (18%), Positives = 211/581 (36%), Gaps = 65/581 (11%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +TS + YVN PH+G++ +++ DV R+ R++G + GTDE+G A
Sbjct: 8 EKVFFVTSPIYYVNAAPHIGHVYSTLI-TDVIGRYHRVKGERVFALTGTDEHGQKVAEAA 66
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
+ SP + K ++ D S D F RT+ Q + ++ KL +
Sbjct: 67 KQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLG 126
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ Y + + FL + + +G
Sbjct: 127 RYEGWYSISDESFLTPQNITDGVDK-----------------------DGNPCKVSLESG 163
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMS--VAGSWSQNAIQATHAWLKEGLKVRCITR 257
+ + L A R +L E+ + + + + + +++GL ++R
Sbjct: 164 HVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVI---RAVEKGLPDLSVSR 220
Query: 258 D----LKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQF-- 311
W +PVP + YVW DA Y++ + +E + ++ +
Sbjct: 221 ARATLHNWAIPVPGN--PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFP 278
Query: 312 -----MGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
+GKD + FH + +P+ LL G L K I + + K SKS G +
Sbjct: 279 ADVHVIGKDILKFHAIYWPAFLLSAGL--PLPKKIVAHGWWTKDRKKISKSLGNVFDPVE 336
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPG 426
+ + +Y+LL D ++ ++ A+ N EL + LGN + R S
Sbjct: 337 KAEE-FGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKIN--- 392
Query: 427 QGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTAMSISSEGNAYL 486
P A + ++L + + +++ + + NAY+
Sbjct: 393 --VNGEWPSP--AAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLRAINAYV 448
Query: 487 QESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLC 546
+ WKL K D V+ ++ V + LL P +P SV + L + +
Sbjct: 449 TDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIE 508
Query: 547 DEKGDVDRARRPWEIIPAGHKIGS---PNPLFKELKDDEVE 584
+ + + +P G ++G LF + + +
Sbjct: 509 NFE---------FGAVPPGTRLGPAVEGEVLFSKRSTENTK 540
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain,
OB-fold, tRNA synthetase complex, RNA binding protein;
1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Length = 171
Score = 262 bits (672), Expect = 2e-83
Identities = 92/165 (55%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 644 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCV 703
I ++RLD+R+G I +KHPDAD+LYVEE+DVGE+ PRTVVSGLV H+PLE+MQ RMV +
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 704 LCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPK 763
LCNLKP MRG+ S AMV+CAS+ + K+E++ PP + G+R+ F F GEPD LNPK
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPK 118
Query: 764 KKVWETVQVDLHTNTELVACYKDIPF-TTSAGICTVSSIQSGSIR 807
KK+WE +Q DLHTN E VA YK +PF G+C ++ + I+
Sbjct: 119 KKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 163
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 258 bits (660), Expect = 1e-81
Identities = 90/169 (53%), Positives = 119/169 (70%), Gaps = 3/169 (1%)
Query: 641 EPEI-SIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
EPE +RLDIRVGKI V+KHPDAD+LYVE+IDVGE +PRTVVSGLV+ +P EE+Q+R
Sbjct: 1 EPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDR 60
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPD 757
+V VLCNLKP MRG++S M+LCAS N +VE ++PP + GE V G+E G+PD
Sbjct: 61 LVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPD 120
Query: 758 DVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 806
+ L PKKKV+E +Q D + E +A +K F T G + S++ G+I
Sbjct: 121 EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 169
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding
fold, OB fold, beta- barrel; 1.87A {Escherichia coli}
SCOP: b.40.4.4 PDB: 3ers_X
Length = 111
Score = 149 bits (379), Expect = 1e-42
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 643 EISI---ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
++ ARL++RVGKI +V++H +AD LY+ ++DVG+ + V+ LV + EE+ +
Sbjct: 3 TVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGK 61
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
V VLCNL+ MRG S M+LCA T D ++ L+ P + G RV
Sbjct: 62 TVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 134 bits (339), Expect = 3e-37
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 643 EISI---ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
+ A+LD+RVGKI +V+ HP+AD LYV ++D+G+ + RT+V+GL K+ EE+ R
Sbjct: 2 YVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNR 60
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
V V+ NL+P +RGI S M+L A + +V L+ P K K+G +V
Sbjct: 61 YVVVVANLEPKKLRGIGSQGMLLAADDGE--RVALLMPDKEVKLGAKV 106
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Length = 111
Score = 111 bits (279), Expect = 4e-29
Identities = 30/111 (27%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 641 EPEISI---ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQ 697
+ I I ++D+RV K+ ++ ++ L + +G+ + RTVV+G+ K+ EE+
Sbjct: 4 KALIGIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELV 62
Query: 698 ERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVA 748
+ + ++ NLKP + GI+S M+L AS + + ++ P + K G +++
Sbjct: 63 GKKIVIVANLKPRKIFGIESQGMILAASDGE--NLSVIVPDRDVKEGAKLS 111
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 110 bits (277), Expect = 7e-29
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 641 EPEISI---ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQ 697
+ + ++VG + K +K L +D G + RT+V+G+ IP EE++
Sbjct: 4 MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELE 62
Query: 698 ERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
+ + NLKP G++S M++ A T D KV L+ P+ +G RV
Sbjct: 63 GKKFIFVVNLKPKKFSGVESQGMLILAETEDG-KVYLIPVPEEVPVGARV 111
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for
infectious diseases, center for structural GENO
infectious diseases; 1.50A {Bacillus anthracis}
Length = 112
Score = 106 bits (266), Expect = 2e-27
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 640 AEPEISI---ARLDIRVGKITKVQKHPDAD-ALYVEEIDVGEVQPRTVVSGLVKHIPLEE 695
+ + LD+R+G +T ++ +A EID GE+ + + + K E+
Sbjct: 1 SNAMANFEDFLTLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPED 60
Query: 696 MQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVA 748
+ + + + N P + G KS +VL V L++P G +++
Sbjct: 61 LIGQQIVAVVNFPPKRVAGFKSEVLVLGGVPEAG-DVVLLQPNMELPNGTKIS 112
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid;
beta barrel, OB fold, homodimer, protein secretio; HET:
CIT; 1.65A {Agrobacterium tumefaciens str}
Length = 131
Score = 105 bits (263), Expect = 1e-26
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
Query: 622 GKKQKSAKSTAGAKSKTTAEPEISI---ARLDIRVGKITKVQKHPDAD-ALYVEEIDVG- 676
G + + EIS ++DIRVG I + P+A +ID G
Sbjct: 1 GSHMVPGQKQHYVQPTAANSGEISYADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGP 60
Query: 677 EVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVE 736
E+ + + + H E + R V + N P + +S + L + ++ + L
Sbjct: 61 EIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADANG-DIVLAA 119
Query: 737 PPKSAKIGERV 747
+ GE++
Sbjct: 120 VERPVPNGEKM 130
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer,
hydrophobic cavity, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
b.40.4.4
Length = 109
Score = 102 bits (256), Expect = 4e-26
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 644 ISI---ARLDIRVGKITKVQKHPDAD-ALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
+ LD+RVG++ + + H A Y +D+G + + + + + E++ R
Sbjct: 2 TPLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGR 61
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
+V NL + G S +VL +V L+ P + +G +V
Sbjct: 62 LVVCAVNLGAKRVAGFLSEVLVLGVPDEAG-RVVLLAPDREVPLGGKV 108
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer,
protein secretio; 1.55A {Agrobacterium tumefaciens str}
Length = 116
Score = 99.5 bits (249), Expect = 4e-25
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 642 PEISI---ARLDIRVGKITKVQKHPDAD-ALYVEEIDVG-EVQPRTVVSGLVKHIPLEEM 696
EIS ++DIRVG I + P+A +ID G E+ + + + H E +
Sbjct: 6 GEISYADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESL 65
Query: 697 QERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
R V + N P + +S + L + ++ + L + GE++
Sbjct: 66 VGRQVLGVVNFPPRQIGPFRSEVLTLGFADANG-DIVLAAVERPVPNGEKM 115
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding
fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Length = 113
Score = 98.8 bits (247), Expect = 7e-25
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 643 EISI---ARLDIRVGKITKVQKHPDAD-ALYVEEIDVG-EVQPRTVVSGLVKHIPLEEMQ 697
I +LDIR G I K ++ P+A ID G E+ + + + K E +
Sbjct: 4 MAVIDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLI 63
Query: 698 ERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVA 748
+ V + N P + G KS +VL V L++P + G ++
Sbjct: 64 NKQVIAVVNFPPRRIAGFKSEVLVLGGIPGQG-DVVLLQPDQPVPNGTKIG 113
>2e8g_A Hypothetical protein PH0536;
oligonucleotide/oligosaccharide-binding fold,
alpha-helices bundle, structural genomics, NPPSFA; 1.70A
{Pyrococcus horikoshii}
Length = 241
Score = 88.9 bits (220), Expect = 6e-20
Identities = 51/236 (21%), Positives = 83/236 (35%), Gaps = 34/236 (14%)
Query: 536 NLQPEKHISLCDE-KGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQ 594
++ I L E D+ R + I + P K+LK+ +
Sbjct: 32 QWDKKRSIQLAKEMIPDIQALR--YSYIDP--EELVDTPQMKDLKEKAKGIIEALGGEDW 87
Query: 595 ADRIIRAEAEAAK--TAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIR 652
+ + + + EQ+ + K K +P + +DI
Sbjct: 88 HHKFLSQASREDREKVEEQVARIKFFL-----NTILNLDRRLKLGKINDP---VIAVDIV 139
Query: 653 VGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCNLKPVAM 712
VG++ V KHP AD L V +++GE + TVV+ + ++E + L P
Sbjct: 140 VGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTNDLT------VKEGNRVAVALLPPRNF 192
Query: 713 RGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWE 768
GI S M L A E V +IG P +G P + LN + E
Sbjct: 193 FGIVSEGMFLGAG-------EGVLKNVKGEIGG---LP--KGIPLEALNETRNAVE 236
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 66.1 bits (161), Expect = 4e-11
Identities = 88/530 (16%), Positives = 168/530 (31%), Gaps = 107/530 (20%)
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+ED EI +KY + + V IS E + K + +E
Sbjct: 335 ALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLE 394
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCE-----NCGKLLNATDLKDPK 194
+ Y + P+EG + + + +++ K+
Sbjct: 395 QATKTIYK---AEYHKGIFKVP--PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVI 449
Query: 195 CKVCRNAPQIRDTNHLFLDL--PALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKV 252
+ A + F+D P + K + + M + + +A WL +
Sbjct: 450 SRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDK---- 505
Query: 253 RCITRDLKWGVPVPL------ERFKEKVFYVWFDAPIG---------------------- 284
+ R + G P+P E + Y+ +
Sbjct: 506 KACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFD 565
Query: 285 YVSITSCYTNEWEQWWKN---PENVELYQFM-------------GKDNVPFH--TVMFPS 326
Y+ + ++ ++ K P + GKD +P H +F
Sbjct: 566 YIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNH 625
Query: 327 TLLGTGENWTLMKTISVTEYLNYESGKFSKSKG--------IGVFGNDAKDTNIPVEVWR 378
+ E+W K I+V + E K SKSKG I G D R
Sbjct: 626 VAIFREEHW--PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVV---------R 674
Query: 379 YYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANG 438
Y+++ SD + + + L I R I++
Sbjct: 675 LYIMSLAEHDSDFDWRR---------KEVGKLRKQIERFYELISQFAEYE------VKGN 719
Query: 439 AESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKE 497
E + + + ++ K +++ A+E+ + + ++ A SI ++ YL+ +
Sbjct: 720 VELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRT-----EGR 774
Query: 498 DQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQLNLQPEKHISLCD 547
D + V+RT L + L+ PF P E+ ++L E +SL
Sbjct: 775 DDEAKRYVLRT---LADVWVRLMAPFTPHICEELWEKLG--GEGFVSLAK 819
Score = 54.6 bits (131), Expect = 1e-07
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 31/167 (18%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
P ++ IT A PY++ H+G+ + DV ARF R++GYN ++ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 79 KAM------------------------EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGR 114
A P I + K+ + S D + R
Sbjct: 90 IAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVD-WSR 148
Query: 115 -----TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156
+ P ++ + F KL + ++++ + + L D
Sbjct: 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 1e-10
Identities = 91/613 (14%), Positives = 173/613 (28%), Gaps = 193/613 (31%)
Query: 77 ETKAMEDNCSPKEI-----CDKYHVIHKD-----VYKWFDISFDNFGRTSTPQQTEACQA 126
+ K ++D PK I D H+I + F +Q E Q
Sbjct: 34 DCKDVQD--MPKSILSKEEID--HIIMSKDAVSGTLRLFWTLLS--------KQEEMVQK 81
Query: 127 IFKKLLDNN--WL---IENTMQQPYCDTCKRFLA--DRLVEGTCPFEGCNYESARGDQCE 179
+++L N +L I+ +QP T + ++ DRL F Y +R
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFA--KYNVSRLQPYL 138
Query: 180 N---------------------CGK-LLNATDLKDPKCKVCRNAP-------QIRDTNHL 210
GK + K + + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 211 FLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK--------VRC--ITRDLK 260
L L +++ N + S N H ++ L+ C + ++
Sbjct: 199 LEMLQKLLYQIDP---NWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNV- 253
Query: 261 WGVPVPLERF--KEKVFYVWFDAPI----GYVSITSCYTNEWEQWWKNPENVELY-QFMG 313
F K+ + + T + E L +++
Sbjct: 254 QNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 314 ----------KDNVPFHTVMFPSTL---LGTGENW------TLMKTISVT-EYLN----- 348
P + ++ L T +NW L I + L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 349 --YESGKFSKSKGIGVFGNDAKDTNIPVEV----W----------------RYYLLTNRP 386
++ + VF +IP + W +Y L+ +P
Sbjct: 373 KMFDR--------LSVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 387 EVS-----DTLFTWADLQAKSNNE--LLNNLGNFINRVLSF----IAKPPGQGY-----G 430
+ S +L+ K NE L ++ + N +F + P Y G
Sbjct: 422 KESTISIPSIYL---ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 431 SIVPDANGAESHQLTKT-LAEKVGKYVEQYLEA--MEKVKLKQGLKTAMSISSEGNAYLQ 487
H L E++ + +L+ +E+ K++ TA + S LQ
Sbjct: 479 -----------HHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHD-STAWNASGSILNTLQ 525
Query: 488 ESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSFSVEV--NKQLNLQPEKHISL 545
+ +F+K Y + + L + F+P + +K +L I+L
Sbjct: 526 QLKFYKPY----------ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL---RIAL 572
Query: 546 CDEKGDV-DRARR 557
E + + A +
Sbjct: 573 MAEDEAIFEEAHK 585
Score = 44.5 bits (104), Expect = 2e-04
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 29/138 (21%)
Query: 655 KITKVQKHPDADA-LYVEEIDV--GEVQPRTVVSGLVK-HIPLEEMQERMVCVLCNLKPV 710
I Q+ P +Y+E+ D + Q K ++ + ++ L L+P
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQV------FAKYNVSRLQPYLKLRQALLELRPA 150
Query: 711 A------MRGI-KSHAMVLCASTSDNTKVELVEPPKS--AKIGERVAFPGFEGEPDDVLN 761
+ G K+ + + KV+ K + P+ VL
Sbjct: 151 KNVLIDGVLGSGKT---WVALDVCLSYKVQCKMDFKIFWLNLKNC-------NSPETVLE 200
Query: 762 PKKKVWETVQVDLHTNTE 779
+K+ + + + ++
Sbjct: 201 MLQKLLYQIDPNWTSRSD 218
Score = 42.1 bits (98), Expect = 7e-04
Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 72/250 (28%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P LP R +L T+ P +II + D A + + N D+
Sbjct: 314 RPQDLP----REVLTTN--------PRRLSIIAESIR-DGLATWDNWKHVN------CDK 354
Query: 72 YGTATETKAMEDNCSPKEICDKYH---VIHKDVY--------KWFDISFDNFGRTSTPQQ 120
T E+ + P E + V + WFD+ +
Sbjct: 355 LTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-------VM 405
Query: 121 TEACQAIFKKLLDNNWLIENTMQQP--YCDTCKRF-----LADRLVEGTCPFEGCNYESA 173
+ L++ E+T+ P Y + + L +V+ +Y
Sbjct: 406 VVVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVD--------HYNIP 456
Query: 174 RGDQCENCGKLLNATD----------LKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEE 223
+ ++ D LK+ + ++ +FLD L K+
Sbjct: 457 KTFDSDDLIP--PYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 224 YINNMSVAGS 233
+ +GS
Sbjct: 510 DSTAWNASGS 519
Score = 35.6 bits (81), Expect = 0.070
Identities = 64/472 (13%), Positives = 140/472 (29%), Gaps = 132/472 (27%)
Query: 355 SKSKGIGVFGNDAKDTNIP--VEVWRYYLLTNRPEVSDTLFTWADLQAKSNNELLNNLGN 412
+ + + F + N + + +P + ++ E + L N
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTE--QRQPSMMTRMY----------IEQRDRLYN 121
Query: 413 FINRVLS--FIAKPPGQGYGSIVPDANGAESHQLTKTLAE-KVGKYVEQYLEAMEKVKLK 469
N+V + +++ +L + L E + K V ++ +
Sbjct: 122 -DNQVFAKYNVSRLQ--------------PYLKLRQALLELRPAKNV--LIDGV------ 158
Query: 470 QGL-KTAMSISSEGNAYLQESQ----FW-KLYKEDQPSCSIVMRTSVGLVHLLACLLEPF 523
G KT +++ + +Q FW L + P + M L LL
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---------LQKLLYQI 209
Query: 524 MPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEV 583
P+++ + N++ H + RR + P N L L V
Sbjct: 210 DPNWTSRSDHSSNIKLRIH----SIQ---AELRRLLKSKP------YENCL---LVLLNV 253
Query: 584 EFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTK---ISDG-GGKKQKSAKSTAGAKSKTT 639
++ + A + K L T+ ++D + + T
Sbjct: 254 ---QNA-------KAWNAFNLSCKI---LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 640 AEPEISIAR-LDIRVGKITK--VQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEM 696
E + + + LD R + + + +P ++ E I G KH+ +++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-----KHVNCDKL 355
Query: 697 QERMVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKI--GERVAFPGFEG 754
+ L L+P R + + + P + + + +
Sbjct: 356 TTIIESSLNVLEPAEYR----KMFDRLSVFPPSAHI----PTILLSLIWFDVI-----KS 402
Query: 755 EPDDVLN-----------PKKKVWE--TVQVDLHTNTE--------LVACYK 785
+ V+N PK+ ++ ++L E +V Y
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 55.0 bits (132), Expect = 9e-08
Identities = 87/513 (16%), Positives = 161/513 (31%), Gaps = 95/513 (18%)
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
A+ED EI +KY + + V IS E + K + +E
Sbjct: 335 ALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLE 394
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESAR---GDQCENCGKLLNATDLKDPKCK 196
+ Y + P+EG + + + G + +
Sbjct: 395 QATKTIYK---AEYHKGIFKVP--PYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNV- 448
Query: 197 VCRN-----APQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLK 251
+ R I D + P + K + + M + + +A WL +
Sbjct: 449 ISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDK--- 505
Query: 252 VRCITRDLKWGVPVPL------------------------------------ERFKEKVF 275
+ R + G P+P E+ + F
Sbjct: 506 -KACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFF 564
Query: 276 YVWFDAPIGYVSI---TSCYTNEWEQWWKNPENVELYQFM-------GKDNVPFH--TVM 323
F E + E E + GKD +P H +
Sbjct: 565 DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFE--YWYPLDWRCSGKDLIPNHLTFFI 622
Query: 324 FPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLT 383
F + E+W K I+V + E K SKSKG + DA + N +V R Y+++
Sbjct: 623 FNHVAIFREEHW--PKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGA-DVVRLYIMS 679
Query: 384 NRPEVSDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQ 443
SD + + + L I R I++ E
Sbjct: 680 LAEHDSDFDW---------RRKEVGKLRKQIERFYELISQFAEYE------VKGNVELKD 724
Query: 444 LTKTLAEKVGKYVEQYLEAMEKVKLKQGLKTA-MSISSEGNAYLQESQFWKLYKEDQPSC 502
+ + + ++ K +++ A+E+ + + ++ A SI ++ YL+ ++ D +
Sbjct: 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE-----GRDDEAK 779
Query: 503 SIVMRTSVGLVHLLACLLEPFMPSFSVEVNKQL 535
V+RT L + L+ PF P E+ ++L
Sbjct: 780 RYVLRT---LADVWVRLMAPFTPHICEELWEKL 809
Score = 54.2 bits (130), Expect = 1e-07
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 31/167 (18%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
P ++ IT A PY++ H+G+ + DV ARF R++GYN ++ G+
Sbjct: 31 PKEKKFYITVAFPYLSGHLHVGHARTYTI-PDVIARFKRMQGYNVLFPMAWHITGSPIVG 89
Query: 79 KA------------------------MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGR 114
A + P I + K+ + S D + R
Sbjct: 90 IAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVD-WSR 148
Query: 115 -----TSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLAD 156
+ P ++ + F KL + ++++ + + L D
Sbjct: 149 EFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGD 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 6e-07
Identities = 79/466 (16%), Positives = 136/466 (29%), Gaps = 208/466 (44%)
Query: 7 ENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYN---- 62
ENP+ P K Y+ ++P +IG V+ + +L G+
Sbjct: 220 ENPSNTPDK---------------DYLLSIPISCPLIG-VIQLAHYVVTAKLLGFTPGEL 263
Query: 63 AIYICGTDEYG----TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTP 118
Y+ G + TA A D S+++F +
Sbjct: 264 RSYLKGATGHSQGLVTAVAI-AETD------------------------SWESFFVSVR- 297
Query: 119 QQTEACQAIFKKLLDNNWL-IENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQ 177
+A +F ++ + + Y +T L ++E D
Sbjct: 298 ---KAITVLF-------FIGVRC--YEAYPNTS---LPPSILE---------------DS 327
Query: 178 CEN-CGK---LLNATDLKDPKCKVCRNAPQIRDTNHLFLDLP-------ALRNKLEEYIN 226
EN G +L+ ++L + +V + TN LP +L N
Sbjct: 328 LENNEGVPSPMLSISNL--TQEQV---QDYVNKTNS---HLPAGKQVEISLVNGA----K 375
Query: 227 NMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEK--VFYVWFDAPIG 284
N+ V+G ++ + L+ K + + + +P F E+ F F P+
Sbjct: 376 NLVVSGP--PQSLYGLNLTLR---KAKAPSGLDQSRIP-----FSERKLKFSNRFL-PVA 424
Query: 285 YVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVT 344
PFH S LL + +
Sbjct: 425 --------------------------------SPFH-----SHLLVPASD-------LIN 440
Query: 345 EYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404
+ L + F +AKD IPV Y DT F +DL+ S +
Sbjct: 441 KDLVKNNVSF-----------NAKDIQIPV----Y----------DT-FDGSDLRVLSGS 474
Query: 405 ELLNNLGNFINR---------------VLSFIAKPPGQ--GYGSIV 433
+ + + I R +L F PG G G +
Sbjct: 475 -ISERIVDCIIRLPVKWETTTQFKATHILDF---GPGGASGLGVLT 516
Score = 47.4 bits (112), Expect = 2e-05
Identities = 73/430 (16%), Positives = 137/430 (31%), Gaps = 160/430 (37%)
Query: 429 YGSI-----VPDANGAESHQL----TKTL----------------AEKVGK---YVEQYL 460
+GS+ VP A+ + QL K L AE VGK YV +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 461 EAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLL 520
E + + Q L + + E+ + L D +H LA L
Sbjct: 73 EPSKVGQFDQVLNLCL------TEF--ENCY--LEGND--------------IHALAAKL 108
Query: 521 EPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRP---WEIIPAGH-KI-------G 569
+ V+ + + + +I+ + + + G+ ++ G
Sbjct: 109 LQENDTTLVKTKELI----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 570 SPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLKKTKISDGGGKKQKSAK 629
+ + F+EL+ + +++ + D I + AE L +
Sbjct: 165 NTDDYFEELR----DLYQT-YHVLVGDLIKFS-------AETLSEL-------------- 198
Query: 630 STAGAKSKTTAEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVS---- 685
++ AE + L+I + + PD D Y+ I P +S
Sbjct: 199 ----IRTTLDAEKVFTQG-LNI-LEWLENPSNTPDKD--YLLSI------P---ISCPLI 241
Query: 686 GLVK--HIPLEEMQERMVCVLCNLKPVAMR----GIKSHAM-VLCA---STSDNTKVELV 735
G+++ H + L P +R G H+ ++ A + +D +
Sbjct: 242 GVIQLAHY-------VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SWESFF 293
Query: 736 EPPKSA-----KIGERV--AFPGF--------------EGEPDDVLN----PKKKVWETV 770
+ A IG R A+P EG P +L+ +++V + V
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 771 QVDLHTNTEL 780
TN+ L
Sbjct: 354 N---KTNSHL 360
Score = 40.8 bits (95), Expect = 0.002
Identities = 77/496 (15%), Positives = 147/496 (29%), Gaps = 175/496 (35%)
Query: 310 QFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY------LNYESGKFSKS------ 357
++ +++ H + + LL + + + Y K S S
Sbjct: 94 CYLEGNDI--HALA--AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 358 -KG----IGVF---GNDAKDTNIPV----EVWRYYLLTNRPEVSDTLFTWAD-LQ--AKS 402
+G + +F GN T+ ++++ Y V D + A+ L ++
Sbjct: 150 GEGNAQLVAIFGGQGN----TDDYFEELRDLYQTY----HVLVGDLIKFSAETLSELIRT 201
Query: 403 NNELLNNLGNFINRVLSFIAKP---PGQGYGSIVPDA---NGAESHQLT--KTLAEKVGK 454
+ +N +L ++ P P + Y +P + G QL A+ +G
Sbjct: 202 TLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVI--QLAHYVVTAKLLGF 258
Query: 455 YVEQYLEAMEKV-KLKQGLKTA--MSISSEGNAYLQESQ------FW------KLYKEDQ 499
+ ++ QGL TA ++ + ++ + F+ + Y
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY---- 314
Query: 500 PSCSI---VMRTSV----GL-VHLLAC--LLEPFMPSFSVEVNKQLNLQPEKHISL---- 545
P+ S+ ++ S+ G+ +L+ L + + + + N L + ISL
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 546 -----------------------CDEKGDVDRA----RRP---WEIIPAGHKIGSP--NP 573
D R R+ +P + SP +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP----VASPFHSH 430
Query: 574 L--------FKELKDDEVEFFRS----------------KFAGSQADRIIRAEAEAA--- 606
L K+L + V F +GS ++RI+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 607 KTAEQLKKTKISDGGGKKQKSAKSTAGAKSKTTAEPEISIARLDIRVGKITKVQKHPDAD 666
+T Q K T I D G G S +G +T K D
Sbjct: 491 ETTTQFKATHILDFG----------PGGAS---------------GLGVLTHRNK----D 521
Query: 667 ALYVEEIDVGEVQPRT 682
V I G +
Sbjct: 522 GTGVRVIVAGTLDINP 537
Score = 38.5 bits (89), Expect = 0.011
Identities = 43/275 (15%), Positives = 80/275 (29%), Gaps = 128/275 (46%)
Query: 300 WKNPEN--VELYQF----MGKDNVPFHTVMFPSTLLGTG-----ENWTLMKTISVTEYLN 348
W +N + Y F + +N T+ F G EN++ M
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFG----GEKGKRIRENYSAMI--------- 1692
Query: 349 YESGKFSKSKGIGVFGN-DAKDTNI----PVEVWRYYLLTNRPEVSDTLFT--------- 394
+E+ K K +F + T+ LL+ T FT
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKG-----LLS------ATQFTQPALTLMEK 1741
Query: 395 --WADLQAK------------SNNELLNNLGNF-----INRVLSF--------------- 420
+ DL++K S LG + + V+S
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHS-------LGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 421 IAKPPGQ----GYG-------SIVPDANGAESHQLTKTLAEKVGKYVE---------QY- 459
+A P + YG + + + + + ++ G VE QY
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 460 ----LEAME------------KVKLKQGLKTAMSI 478
L A++ K+ + + L+ ++S+
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIE-LQKSLSL 1888
Score = 32.7 bits (74), Expect = 0.70
Identities = 45/294 (15%), Positives = 82/294 (27%), Gaps = 115/294 (39%)
Query: 68 GTDEYGTATETKAMEDNCSPKEICDKYHVIHKDVYKW--FDISFDN-------FG----- 113
G D Y T+ + + + D + KD Y + DI +N FG
Sbjct: 1632 GMDLYKTSKAAQDVWNRA------DNHF---KDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 114 ----------RTSTPQQTEACQAIFKKLLDNNWLI------------ENTMQQP------ 145
+ + IFK++ +++ + T QP
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--QPALTLME 1740
Query: 146 YCDTCKRFLADR-LVEGTCPFEG----------C-----NYESA------RGDQCENCGK 183
L + L+ F G + ES RG
Sbjct: 1741 KA--AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG-------M 1791
Query: 184 LLNATDLKDPKCK----VCRNAP-QIRDTNHLFLDLPALRNKLE----------EYIN-N 227
+ +D + + P ++ AL+ +E E +N N
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRV----AASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 228 MS-----VAGSWSQNAIQATHAWLKEGLKVRCITRDL-KWGVPVPLERFKEKVF 275
+ AG A+ L +K++ I D+ + + LE + +F
Sbjct: 1848 VENQQYVAAGD--LRALDTVTNVLNF-IKLQKI--DIIELQKSLSLEEVEGHLF 1896
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein
structure initiative; 2.70A {Staphylococcus
saprophyticus subsp}
Length = 199
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 650 DIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCVLCN--- 706
VG + KHPDAD L V +DV + +V G P E +++V
Sbjct: 92 KFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCG----APNVEAGQKVVVAKVGAVM 146
Query: 707 -----LKPVAMRGIKSHAMVLCAST----SDNTKVE-LVEPPKSAKIGERVA 748
+K +RG+ S M +C+ + + + ++ +G+
Sbjct: 147 PSGMVIKDAELRGVASSGM-ICSMKELGLPNAPQEKGIMVLSDDYTVGQSFF 197
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 46.3 bits (111), Expect = 4e-05
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 650 DIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSG 686
+ VG++ + +HP+AD L V +++VG + +V G
Sbjct: 44 GVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCG 80
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 40.6 bits (96), Expect = 0.002
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 20/139 (14%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED-NCSPKE 89
P N +PH+G+ D+F R+ +RGY A G D +G E + + K
Sbjct: 47 PTANGLPHVGHAQARSYK-DLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKR 105
Query: 90 ICDKYHVI------HKDVYKWFDI---SFDNFGR---------TSTPQQTEACQAIFKKL 131
+ Y + + V+ + + T P E+ K L
Sbjct: 106 EIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165
Query: 132 LDNNWLIENTMQQPYCDTC 150
D L + PYC C
Sbjct: 166 FDRGLLYRDHKVVPYCPRC 184
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 40.6 bits (96), Expect = 0.002
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 27/88 (30%)
Query: 651 IRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSG-------------LVK-HIPLEEM 696
+ ++ + P L +D G VVSG L +P
Sbjct: 45 VVFARVLEAHPIPG-TRLKRLVLDAGR--TVEVVSGAENARKGIGVALALPGTELPGLGQ 101
Query: 697 QERMVCVLCNLKPVAMRGIKSHAMVLCA 724
+ + ++G++S M +
Sbjct: 102 K---------VGERVIQGVRSFGM-ALS 119
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus
thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1
PDB: 1ivs_A* 1iyw_A
Length = 862
Score = 39.1 bits (92), Expect = 0.006
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATETK 79
D R+ R+RG+ A+++ GTD G AT+
Sbjct: 61 DALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.079
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 14/37 (37%)
Query: 469 KQGLKTAMSISSEGNAYLQESQFWKLYKEDQ-PSCSI 504
KQ LK LQ S KLY +D P+ +I
Sbjct: 19 KQALKK-----------LQAS--LKLYADDSAPALAI 42
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase;
2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Length = 168
Score = 33.7 bits (78), Expect = 0.098
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 17 PIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICG 68
P+P + N+++T NN +++ S +F +GY + + G
Sbjct: 54 PLPERLNVVLTRRPKTSNN----PSLVFFNGSPADVVKFLEGKGYERVAVIG 101
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.5 bits (76), Expect = 0.18
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 10/33 (30%)
Query: 162 TCPFEGCN-------YESARGDQ-CENCGKLLN 186
TCP C + GD C CG +L+
Sbjct: 23 TCP--ECKVYPPKIVERFSEGDVVCALCGLVLS 53
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 33.2 bits (77), Expect = 0.39
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 653 VGKITKVQKHPDADALYVEEIDVGEVQPRTVVSG 686
VG I +K + ++D+GE +P +V G
Sbjct: 47 VGYIQSKEKGSGN----ICQVDIGEEEPVQIVCG 76
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 33.0 bits (76), Expect = 0.43
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY------ICGTDEYGTATETK----A 80
P V N H+GN + + D+ + R GY Y I E K A
Sbjct: 50 PTVYNYAHIGNF-RTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTA 108
Query: 81 MEDNCSPKEICDKY 94
E + EI + +
Sbjct: 109 REKGLTVYEISEFF 122
Score = 31.0 bits (71), Expect = 1.5
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 344 TEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTN--RPEVSDTLFTWADLQAK 401
E+L + K SKS+G + D +D N +RY LT+ R ++ F+ +LQA
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLK---FSLDNLQAS 346
Query: 402 SNNELLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLE 461
NL N ++ Y S+ P + L +Y + ++E
Sbjct: 347 KIA--RENLINKLSYF-----------YESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVE 393
Query: 462 AME 464
+
Sbjct: 394 KIS 396
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 33.0 bits (75), Expect = 0.50
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P P+ + N++++ L + II V Y +I G
Sbjct: 113 PKKFKPLSNRINVILSRTLK-KEDFDEDVYIINKVEDL---IVLLGKLNYYKCFILG--- 165
Query: 72 YGTATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISF 109
G+ + +E K + + D+ F
Sbjct: 166 -GSVVYQEFLEKKL-----IKKIYFTRINSTYECDVFF 197
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.52
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 568 IGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRAEAEAAKTAEQLK---KTKISDG---- 620
I + L E E R K+ Q R+ +A + ++ + K + +
Sbjct: 74 IAQADRL-----TQEPESIR-KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
Query: 621 GGKKQKSAKSTAGAKSKTTAEPE 643
+ +K+ + A +P+
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPD 150
Score = 30.5 bits (68), Expect = 1.6
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 435 DANGAESHQLTKTLAEK-VGKYVEQYLEAMEKVK 467
DA Q + A+K + ++ ++ E +EK K
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.2 bits (70), Expect = 0.68
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 28/106 (26%)
Query: 118 PQQTEACQAIFKKLLDNNWLIENTMQQPYC------------DTCKRFLADRLVEGTCPF 165
QT C F K + + + P + KR + +V+ CP
Sbjct: 31 AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVK--CPN 87
Query: 166 EGCNYESARGD-------------QCENCGKLLNATDLKDPKCKVC 198
EGC ++ C C + + K C
Sbjct: 88 EGCLHKMELRHLEDHQAHCEFALMDCPQCQRPFQKFHINIHILKDC 133
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
{Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Length = 371
Score = 31.3 bits (70), Expect = 1.4
Identities = 23/223 (10%), Positives = 64/223 (28%), Gaps = 20/223 (8%)
Query: 206 DTNHLFLDLP-ALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWG-- 262
+ ++ + + +E Y+ + + ++ + +
Sbjct: 78 TSGSFDVNGKENIASFMESYVEQIKENKKLDSTYAGTAEIKQPVVKSLL-DSKGIHYNQG 136
Query: 263 ------VPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDN 316
PV + + +V A G V+ + ++ + Y +
Sbjct: 137 NPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQIMKYHNYPNKGLKDYTYTLSSNNP 196
Query: 317 VPFHTVMFPSTLLGTGENWTLMK---TISVTEYLNYESGKFSKSKGIGV---FGND---A 367
H + + NW + + + + GI V +G A
Sbjct: 197 YFNHPKNLFAAISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSA 256
Query: 368 KDTNIPVEVWRYYLLT-NRPEVSDTLFTWADLQAKSNNELLNN 409
+ + + + + +++ F+ D +A+ + EL N
Sbjct: 257 GSSRVQRALKENFGYNQSVHQINRGDFSKQDWEAQIDKELSQN 299
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 31.4 bits (72), Expect = 1.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89
DV AR+ R+ G N + G D +G E A+++N +P
Sbjct: 80 DVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAP 119
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 31.3 bits (71), Expect = 1.5
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
+ P+ + ++I+S+LP + + ++ + I++CG G
Sbjct: 63 GRRPLKNRIIVVISSSLPQ-DEADPNVVVFRNLEDS--IENLMNDDSIENIFVCG----G 115
Query: 74 TATETKAMEDNCSPKEICDKYHV 96
+ A++DN D+ ++
Sbjct: 116 ESIYRDALKDNF-----VDRIYL 133
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus
thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A*
2byt_A 2v0g_A*
Length = 878
Score = 31.4 bits (72), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 50 DVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKE 89
DV ARF R++GY ++ G D +G E A++ PK+
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKD 99
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 31.0 bits (69), Expect = 1.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 565 GHKIGSPNPLFKELKDDEVEFFRSKFA 591
IG + DDE+EF R +
Sbjct: 14 NALIGYDVTDVSNVHDDELEFTRRRLV 40
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan
binding, bacterial flagellum, flagellar rotation, inner
membrane, membrane; 1.60A {Helicobacter pylori} PDB:
3cyq_B* 3imp_B
Length = 138
Score = 29.6 bits (67), Expect = 2.0
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 315 DNVPFHTVMFPSTLLGTGENWTL--MKTISVTEYL 347
D+ P F S ++ L + V + L
Sbjct: 46 DDTPLVKTRFKS-------HYELAANRAYRVMKVL 73
>3s06_A Motility protein B; peptidoglycan binding, flagellar rotation,
chemotaxis, bacte flagellar motor, membrane, motor
protein; 1.80A {Helicobacter pylori} PDB: 3s03_A 3s0h_A
3s02_A
Length = 166
Score = 29.6 bits (67), Expect = 2.1
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 315 DNVPFHTVMFPSTLLGTGENWTL--MKTISVTEYL 347
D+ P F S ++ L + V + L
Sbjct: 74 DDTPLVKTRFKS-------HYELAANRAYRVMKVL 101
>3s0y_A Motility protein B; peptidoglycan binding, flagellar rotation,
chemotaxis, bacte flagellar motor, membrane, motor
protein; 1.80A {Helicobacter pylori} PDB: 3s0w_A
Length = 193
Score = 29.8 bits (67), Expect = 2.9
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 315 DNVPFHTVMFPSTLLGTGENWTL--MKTISVTEYL 347
D+ P F S ++ L + V + L
Sbjct: 101 DDTPLVKTRFKS-------HYELAANRAYRVMKVL 128
>1wte_A ECOO109IR; restriction endonuclease, DNA complex, hydrolase/DNA
complex; 1.90A {Escherichia coli} SCOP: c.52.1.29 PDB:
1wtd_A
Length = 272
Score = 30.1 bits (67), Expect = 2.9
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 208 NHLFLDLPALRNKLEEYINNMSVAG----SWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
NH +D+ R+K+ Y AG SW N T W+ EG++ D+K
Sbjct: 185 NHNVIDI---RDKVHVY------AGKEFWSWLNNGEAETQHWVLEGIERAVKEADIKEKN 235
Query: 264 PVPLERFKEKV 274
+E+FKE V
Sbjct: 236 KDLIEKFKEHV 246
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA
binding and regulatory domai binding protein; 2.20A
{Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB:
1iz1_A
Length = 294
Score = 29.8 bits (68), Expect = 3.6
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 9/65 (13%)
Query: 666 DALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCV------LCNLKPVAMRGIKSHA 719
+ L I VG + G+ + + QE + K + +++
Sbjct: 134 EGLLAGTIHVGFSRFFPRHPGIE-IVNI--AQEDLYLAVHRSQSGKFGKTCKLADLRAVE 190
Query: 720 MVLCA 724
+ L
Sbjct: 191 LTLFP 195
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 29.8 bits (66), Expect = 3.8
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 389 SDTLFTWADLQAKSNNELLNNLGNFINRVLSFIAKPPGQ 427
S+ +F A+S ELL++L F++ + PP
Sbjct: 290 SERVFRIDAYMAQSRGELLHSLEGFLDCS---LVLPPTD 325
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 29.9 bits (68), Expect = 3.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 293 TNEWEQWWKNPENVELYQFMGK----DNVPFHTVMFPSTLLGTGEN 334
T EWE+W NP + Y +M DNV +P+ ++ G +
Sbjct: 639 TGEWEEW-GNPNEYKYYDYMLSYSPMDNV--RAQEYPNIMVQCGLH 681
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 29.8 bits (67), Expect = 4.1
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 39/184 (21%)
Query: 12 PPPKLPIPGKRNILITSALPYV-------------NNVPHLGNIIGSVLSA-DVFARFCR 57
PP P+PG+ N++++S L + + + G + A + A
Sbjct: 85 PPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNY 144
Query: 58 LRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKYHV--IHKDVYK---WFDISFDN- 111
+Y G G + +A+ C + + I +F +
Sbjct: 145 TPSIETVYCIG----GGSVYAEALRPPC--VHLLQAIYRTTIRASESSCSVFFRVPESGT 198
Query: 112 -------FGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLA------DRL 158
+ R + ++ + K + N ++ Y R + DR
Sbjct: 199 EAAAGIEWQRETISEELTSANGNETKYYFEKLIPRNREEEQYLSLVDRIIREGNVKHDRT 258
Query: 159 VEGT 162
GT
Sbjct: 259 GVGT 262
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 29.5 bits (67), Expect = 4.1
Identities = 5/54 (9%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 107 ISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVE 160
++++ PQ++ + L + + ++ + + ++ L E
Sbjct: 127 VTYELSRERWVPQRSTLLAKVMSNTLTDLRAVSGFLEHIFSSSFPNYIL-MLHE 179
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 29.7 bits (67), Expect = 4.3
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 12 PPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDE 71
P LP+ + N++++ + V + + +A +N I+I G
Sbjct: 78 PKASLPLKNRINVILSRTVKEVPGCL----VYEDLSTA--IRDLRANVPHNKIFILG--- 128
Query: 72 YGTATETKAMEDNCSPKEICDKYHV 96
G+ + +++ CDK ++
Sbjct: 129 -GSFLYKEVLDNGL-----CDKIYL 147
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 29.4 bits (67), Expect = 4.5
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 23/75 (30%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY-----------ICGTDEYGTATETK 79
V ++ H+G+ + ++ DV AR+ R GY Y I +
Sbjct: 30 ITVYDLCHIGHG-RTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII-----------KR 77
Query: 80 AMEDNCSPKEICDKY 94
A E+ S + D+
Sbjct: 78 ANENGESFVAMVDRM 92
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 29.9 bits (66), Expect = 4.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 565 GHKIGSPNPLFKELKDDEVEFFRSKFA 591
G IG F LKD EV FR K
Sbjct: 149 GVLIGKGLHEFDALKDPEVNEFRRKMR 175
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 29.8 bits (66), Expect = 4.8
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 565 GHKIGSPNPLFKELKDDEVEFFRSKFAG 592
IG F L+D EV FR+K
Sbjct: 14 SLLIGKGLHEFDSLRDPEVNDFRTKMRQ 41
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding,
endonuclease, macro domain, viral protein, ATP-binding,
exonuclease; 1.8A {Human coronavirus NL63}
Length = 174
Score = 28.8 bits (65), Expect = 4.9
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 632 AGAKSKTTAEPEISIARLDIRVGKITKVQKHPDADA 667
AG+ + +P + +G I+ + D
Sbjct: 2 AGSAAAPFTKPFAVYKNVKFYLGDISHLVNCVSFDF 37
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 29.2 bits (64), Expect = 6.7
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 11/56 (19%)
Query: 147 CDTCKRFLADRLVEGTCPF-EGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
C C FL + C +G E +C C P+C+ ++
Sbjct: 507 CVNCSHFLRGQECVEECRVWKGLPREYVSDKRCLPC----------HPECQPQNSS 552
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_3
Length = 197
Score = 28.4 bits (63), Expect = 7.1
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKL 131
T ++D P + K D ++ I D R ++ +A I+K +
Sbjct: 120 TYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTV 177
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,345,187
Number of extensions: 754437
Number of successful extensions: 1796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1690
Number of HSP's successfully gapped: 83
Length of query: 807
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 706
Effective length of database: 3,881,772
Effective search space: 2740531032
Effective search space used: 2740531032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)