RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 003611
(807 letters)
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 236 bits (603), Expect = 1e-71
Identities = 101/394 (25%), Positives = 172/394 (43%), Gaps = 53/394 (13%)
Query: 22 RNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAM 81
+ IL+T ALPY N HLG+++ + ADV+ R+ R+RG+ +IC D +GT KA
Sbjct: 2 KKILVTCALPYANGSIHLGHMLEHIQ-ADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ 60
Query: 82 EDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENT 141
+ +P+++ + H+ + F+IS+DN+ T + + + + I+ +L +N ++ T
Sbjct: 61 QLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120
Query: 142 MQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNA 201
+ Q Y FL DR V V
Sbjct: 121 ISQLYDPEKGMFLPDRFV-------------------------------------VSGAT 143
Query: 202 PQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKW 261
P +RD+ H F DLP+ L+ + + G+ + W + GL+ I+RD +
Sbjct: 144 PVMRDSEHFFFDLPSFSEMLQAWTRS----GALQEQVANKMQEWFESGLQQWDISRDAPY 199
Query: 262 GVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNE------WEQWWKNPENVELYQFMGKD 315
+ K FYVW DAPIGY+ ++ ++++WK ELY F+GKD
Sbjct: 200 -FGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKD 258
Query: 316 NVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVE 375
V FH++ +P+ L G+ + V Y+ K SKS+G + + + +
Sbjct: 259 IVYFHSLFWPAMLEGSNFRK--PSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-FDAD 315
Query: 376 VWRYYLLTN-RPEVSDTLFTWADLQAKSNNELLN 408
RYY + D D + N +++N
Sbjct: 316 SLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVN 349
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 222 bits (566), Expect = 3e-66
Identities = 133/400 (33%), Positives = 202/400 (50%), Gaps = 59/400 (14%)
Query: 24 ILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMED 83
++TSALPY N H G++ G+ L AD+F R+ RL+G + ++ICGTDE+GT +A+++
Sbjct: 4 YMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
Query: 84 NCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQ 143
SP+EI D++H K ++ ISFD FGRT P + Q F K +N L++ +
Sbjct: 64 GRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTK 123
Query: 144 QPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQ 203
Q YC+ K F + +C
Sbjct: 124 QAYCEHDKMF-------------------------------------LPDRFAICGRPIS 146
Query: 204 IRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGV 263
RD+ H ++ + +L+ +I W N +W++EGL+ R ITRDL WG+
Sbjct: 147 FRDSAHYYIKMQDFAERLKRWIEKQ----PWKPNVKNMVLSWIEEGLEERAITRDLNWGI 202
Query: 264 PVPLERFK--EKVFYVWFDAPIGYVSITSCYT------NEWEQWWKNPE-NVELYQFMGK 314
PVPL+ KV YVWF+APIGY+SIT + NEW+++W N + + F+GK
Sbjct: 203 PVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGK 262
Query: 315 DNVPFHTVMFPSTLLGTGE--------NWTLMKTISVTEYLNYESGKFSKSKGIGVFGND 366
DN+PFH + +P+ L+ G+ W L I EYL E KFS S+ ++ ++
Sbjct: 263 DNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHE 322
Query: 367 AKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNNEL 406
D P + RYYL T PE D+ F+++D + + N EL
Sbjct: 323 FLDV-FPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 181 bits (458), Expect = 3e-51
Identities = 89/387 (22%), Positives = 152/387 (39%), Gaps = 42/387 (10%)
Query: 21 KRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKA 80
++ +T+ + YVN PHLG+ +V+ AD AR+ RL GY ++ GTDE+G A
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVV-ADFLARWHRLDGYRTFFLTGTDEHGETVYRAA 60
Query: 81 MEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIEN 140
PK D+ K + I++D+F RT+ + + Q + KK+ + +
Sbjct: 61 QAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYG 120
Query: 141 TMQQPYCDTCKRFLADR-LVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ YC +C+RF ++ LVEG CP G E + + + +
Sbjct: 121 EYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRM-----EKYRPWLQEYIQ 175
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
P + +N + A A L + +
Sbjct: 176 ENPDLIRPE-------------------------GYRNEVLAMLAEPIGDLSISRPKSRV 210
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
WG+P+P + + V +VWFDA + YVS E + + + +GKD +
Sbjct: 211 PWGIPLPWD--ENHVTFVWFDALLNYVSALDYPEGEAYRTFWP----HAWHLIGKDILKP 264
Query: 320 HTVMFPSTLLGTGENWTLMKTISVT-EYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWR 378
H V +P+ + + ++V L + K SK+ G V + + R
Sbjct: 265 HAVFWPTM--LKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLE-KYGRDALR 321
Query: 379 YYLLTNRPEVSDTLFTWADLQAKSNNE 405
YYLL P DT + L+ + +
Sbjct: 322 YYLLREIPYGQDTPVSEEALRTRYEAD 348
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 173 bits (440), Expect = 7e-51
Identities = 88/166 (53%), Positives = 118/166 (71%), Gaps = 2/166 (1%)
Query: 643 EISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVC 702
E+ +RLDIRVGKI V+KHPDAD+LYVE+IDVGE +PRTVVSGLV+ +P EE+Q+R+V
Sbjct: 3 EVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVV 62
Query: 703 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVL 760
VLCNLKP MRG++S M+LCAS N +VE ++PP + GE V G+E G+PD+ L
Sbjct: 63 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL 122
Query: 761 NPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 806
PKKKV+E +Q D + E +A +K F T G + S++ G+I
Sbjct: 123 KPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 168
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 167 bits (425), Expect = 7e-49
Identities = 92/165 (55%), Positives = 121/165 (73%), Gaps = 3/165 (1%)
Query: 644 ISIARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMVCV 703
I ++RLD+R+G I +KHPDAD+LYVEE+DVGE+ PRTVVSGLV H+PLE+MQ RMV +
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 704 LCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPK 763
LCNLKP MRG+ S AMV+CAS+ + K+E++ PP + G+R+ F F GEPD LNPK
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPK 118
Query: 764 KKVWETVQVDLHTNTELVACYKDIPF-TTSAGICTVSSIQSGSIR 807
KK+WE +Q DLHTN E VA YK +PF G+C ++ + I+
Sbjct: 119 KKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 163
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 148 bits (373), Expect = 8e-39
Identities = 60/435 (13%), Positives = 120/435 (27%), Gaps = 66/435 (15%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
G + P N +PH+G+ D+F R+ +RGY A G D +G E
Sbjct: 35 KGGPRYTVYEGPPTANGLPHVGHAQARSY-KDLFPRYKTMRGYYAPRRAGWDTHGLPVEL 93
Query: 79 KAMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLI 138
+ K I + F+ + T + +
Sbjct: 94 EVE-----KKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEA--FTERIAYWVDLEDA 146
Query: 139 ENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVC 198
T++ Y ++ L + G + + L P C C
Sbjct: 147 YATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPY---CPRCGTPLSSHEVALGYPHCWRC 203
Query: 199 RNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRD 258
T F+ +++L + + + + L ++R+
Sbjct: 204 STPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEG---RYGEWLKNLVDWALSRN 260
Query: 259 LKWGVPVPLERFKE---------------------------------------------- 272
WG P+P+ +
Sbjct: 261 RYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMR 320
Query: 273 ---KVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLL 329
V VW+D+ + E + ++ + + + + F+++ +L
Sbjct: 321 RVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVML 380
Query: 330 GTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVS 389
+ I L+ + K SKSKG V D + R+Y+ + P +
Sbjct: 381 FGSIAFK--NVICHGLILDEKGQKMSKSKGNVVDPWDIIR-KFGADALRWYIYVSAPPEA 437
Query: 390 DTLFTWADLQAKSNN 404
D F ++ +
Sbjct: 438 DRRFGPNLVRETVRD 452
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 146 bits (370), Expect = 1e-38
Identities = 67/416 (16%), Positives = 121/416 (29%), Gaps = 30/416 (7%)
Query: 6 EENPAAPPPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIY 65
+NP PK GK +I P V H+G+ + + L D R+ R+RG+ A++
Sbjct: 21 AKNPFVANPK---SGKPPFVIFMPPPNVTGSLHMGHALDNSL-QDALIRYKRMRGFEAVW 76
Query: 66 ICGTDEYGTATETKAME----DNCSPKEICDKYHVIHKDVYKWFDIS------------- 108
+ GTD G AT+ + + ++ + + +K
Sbjct: 77 LPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASA 136
Query: 109 -FDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEG 167
+ T +++ A + F + +C C+ L+D VE G
Sbjct: 137 DWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETCSR-CG 195
Query: 168 CNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINN 227
E A Q + L LK + R L +++
Sbjct: 196 TPIEYAIFPQWWLRMRPLAEEVLKGLRRGDI-AFVPERWKKVNMDWLENVKDWNISRQLW 254
Query: 228 MSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVS 287
+ + T G P + E VF WF + + +S
Sbjct: 255 WGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRL--KRDEDVFDTWFSSALWPLS 312
Query: 288 ITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYL 347
+ P + G D + + + L
Sbjct: 313 TLGWPEETEDLKAFYPGD---VLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVL 369
Query: 348 NYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSN 403
+ + K SKSKG + + + + R+ L+ D L+ N
Sbjct: 370 DEKGQKMSKSKGNVIDPLEMVE-RYGADALRFALIYLATGGQDIRLDLRWLEMARN 424
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 120 bits (302), Expect = 2e-29
Identities = 46/324 (14%), Positives = 95/324 (29%), Gaps = 7/324 (2%)
Query: 14 PKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYG 73
K G+ + PY + H+G++ + DV ARF R++GY ++ G D +G
Sbjct: 25 AKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTM-GDVLARFRRMQGYEVLHPMGWDAFG 83
Query: 74 TATETKAMEDNCSPKEICDKYHVIHKDVYKWFDISFD--NFGRTSTPQQTEACQAIFKKL 131
E A++ PK+ K+ + I +D T P+ Q IF K+
Sbjct: 84 LPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKM 143
Query: 132 LDNNWLIENTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLK 191
+ +C C+ LA+ V + + + + + ++ +
Sbjct: 144 WEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERL 203
Query: 192 DPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSW---SQNAIQATHAWLKE 248
+ +++ ++ + + + + L
Sbjct: 204 LKDLEGLNWPEKVKAMQRAWIG-RLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPV 262
Query: 249 GLKVRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVEL 308
L D++ PLE E T ++ W +
Sbjct: 263 LLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDP 322
Query: 309 YQFMGKDNVPFHTVMFPSTLLGTG 332
+ + P G
Sbjct: 323 HNDRLPFDPEKANAWMPVDQYIGG 346
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 100 bits (251), Expect = 5e-26
Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 643 EISI---ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
++ ARL++RVGKI +V++H +AD LY+ ++DVG+ + V+ LV + EE+ +
Sbjct: 3 TVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGK 61
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
V VLCNL+ MRG S M+LCA T D ++ L+ P + G RV
Sbjct: 62 TVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 109 bits (272), Expect = 8e-26
Identities = 55/411 (13%), Positives = 123/411 (29%), Gaps = 30/411 (7%)
Query: 19 PGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATET 78
G ++ PY N H+G+ + +L D R+ ++G+ A Y+ G D +G E
Sbjct: 45 KGNETFILHDGPPYANGNLHMGHALNKIL-KDFIVRYKTMQGFYAPYVPGWDTHGLPIEQ 103
Query: 79 KAMEDNCSPKEICDKYHVIHKDVYKWFDIS--------------FDNFGRTSTPQQTEAC 124
+ K++ + I F++ T P+ A
Sbjct: 104 ALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQ 163
Query: 125 QAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRLVEGTC------PFEGCNYESARGDQC 178
IF ++ D + + + + + LA+ +E P
Sbjct: 164 IRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYPHDWRTKKPVIFRATPQWFASIS 223
Query: 179 ENCGKLLNATDLKDPKCKVCRNAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSW--SQ 236
+ +L+A + + K + + + R + G ++
Sbjct: 224 KVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTK 283
Query: 237 NAIQATHAWLKEGLKVRCITRDLKWGVPVPLERFKE--KVFYVWFDAPIGYVSITSCYTN 294
+ E R+ K +P F D + S +
Sbjct: 284 ETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRG 343
Query: 295 EWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEY-LNYESGK 353
E + ++Y + +++ G + K + + ++ E K
Sbjct: 344 VLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGV--SPYKFLLSHGFVMDGEGKK 401
Query: 354 FSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKSNN 404
SKS G + + ++ R ++ + +D + L+ S++
Sbjct: 402 MSKSLGNVIVPDQVVKQK-GADIARLWVSSTDYL-ADVRISDEILKQTSDD 450
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 96.6 bits (240), Expect = 1e-24
Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 643 EISI---ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
I I ++D+RV K+ ++ ++ L + +G+ + V+G+ K+ EE+ +
Sbjct: 2 LIGIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGDEERTV-VAGIAKYYTPEELVGK 60
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVA 748
+ ++ NLKP + GI+S M+L A SD + ++ P + K G +++
Sbjct: 61 KIVIVANLKPRKIFGIESQGMILAA--SDGENLSVIVPDRDVKEGAKLS 107
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 96.5 bits (240), Expect = 2e-24
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 643 EISI---ARLDIRVGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLVKHIPLEEMQER 699
+ A+LD+RVGKI +V+ HP+AD LYV ++D+G+ + RT+V+GL K+ EE+ R
Sbjct: 2 YVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNR 60
Query: 700 MVCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
V V+ NL+P +RGI S M+L A D +V L+ P K K+G +V
Sbjct: 61 YVVVVANLEPKKLRGIGSQGMLLAA--DDGERVALLMPDKEVKLGAKV 106
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 93.8 bits (232), Expect = 2e-22
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 20/209 (9%)
Query: 408 NNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVK 467
NNLGNF++R L+F+ + + +VP+ E +L + E++ K ++ E + +
Sbjct: 2 NNLGNFVHRALTFVNR----YFDGVVPERG--ELDELDREALEEIEKAFKEVGELIMNYR 55
Query: 468 LKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMPSF 527
K LK MS++S GN Y Q WK KED+ + S+ +V L LLEPF+P
Sbjct: 56 FKDALKRVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDA 115
Query: 528 SVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFR 587
S ++ LNL K + +PAGHK+ P LFK++ DD++ +F
Sbjct: 116 SEKIWHLLNLDEVKRWE--------------FRELPAGHKVRKPEILFKKVTDDQIIYFI 161
Query: 588 SKFAGSQADRIIRAEAEAAKTAEQLKKTK 616
+ R + E + +
Sbjct: 162 LNYMAKGNPEGARILLDKYYKREDVIRVA 190
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 90.6 bits (224), Expect = 7e-22
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 406 LLNNLGNFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEK 465
L ++LGN + R + + + +P+ E LA + + +
Sbjct: 1 LADDLGNLVQRTRAMLFR----FAEGRIPEPVAGEELAEGTGLAGR-------LRPLVRE 49
Query: 466 VKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDQPSCSIVMRTSVGLVHLLACLLEPFMP 525
+K L+ AM+ N Y+ E + W+L+K++ V+ V + + + LL P MP
Sbjct: 50 LKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMP 109
Query: 526 SFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFK 576
E+ + L L+ E + + W + LF
Sbjct: 110 DKMAELRRALGLKEEVRLEEAER----------WGLAEPRPIPEEAPVLFP 150
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 83.2 bits (205), Expect = 7e-20
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 647 ARLDIRVGKITKVQKHPDADALYVEEI-DVGEVQPRTVVSGLVKHIPLEEMQERMVCVLC 705
LD+RVG++ + + H A + D+G + + + + + E++ R+V
Sbjct: 8 QILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAV 67
Query: 706 NLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERV 747
NL + G S +VL +V L+ P + +G +V
Sbjct: 68 NLGAKRVAGFLSEVLVLGVPDEAG-RVVLLAPDREVPLGGKV 108
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 81.3 bits (200), Expect = 1e-18
Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)
Query: 412 NFINRVLSFIAKPPGQGYGSIVPDANGAESHQLTKTLAEKVGKYVEQYLEAMEKVKLKQG 471
N +R FI K + ++ QL KT + E EA E + +
Sbjct: 3 NLASRNAGFINK----RFDGVLASE--LADPQLYKTFTDAA----EVIGEAWESREFGKA 52
Query: 472 LKTAMSISSEGNAYLQESQFWKLYKED--QPSCSIVMRTSVGLVHLLACLLEPFMPSFSV 529
++ M+++ N Y+ E W + K++ + + L +L L+P +P +
Sbjct: 53 VREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTE 112
Query: 530 EVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVE 584
LN + + GHK+ L+ + +VE
Sbjct: 113 RAEAFLN---------------TELTWDGIQQPLLGHKVNPFKALYNRIDMRQVE 152
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 77.1 bits (188), Expect = 8e-16
Identities = 32/368 (8%), Positives = 77/368 (20%), Gaps = 72/368 (19%)
Query: 20 GKRNILITSALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETK 79
G++ + + + H+GN + +A + R +GY +I D+Y +
Sbjct: 15 GEKEKYVVESGITPSGYVHVGNF-RELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVP 73
Query: 80 AMEDNCSPKEICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIE 139
+ + + ++ E +D + E
Sbjct: 74 RNVPQEWKDYLGMPISEVPDPWGCHESYAEHFM------RKFEEEVEKLGIEVDLLYASE 127
Query: 140 NTMQQPYCDTCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCR 199
+ Y + + R + ++ + + +
Sbjct: 128 LYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEW 187
Query: 200 NAPQIRDTNHLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDL 259
+ G + H + R
Sbjct: 188 D------------------------------GGWKVKYKCPEGHEGWVDIRSGNVKLRWR 217
Query: 260 KWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPF 319
+ G T + + P +
Sbjct: 218 VDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLS-------------L 264
Query: 320 HTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRY 379
+ + GK S SKG + +D + + + R+
Sbjct: 265 MYEFV---------------------GIKGQKGKMSGSKGNVILLSDLYE-VLEPGLVRF 302
Query: 380 YLLTNRPE 387
+RP
Sbjct: 303 IYARHRPN 310
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Length = 35
Score = 66.2 bits (162), Expect = 9e-15
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKC 195
V GTCP+ C E +GDQCE CG+ L L +P+C
Sbjct: 1 VIGTCPY--CGAEDQKGDQCEVCGRPLTPEILINPRC 35
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS),
Zn-domain {Escherichia coli [TaxId: 562]}
Length = 35
Score = 58.9 bits (143), Expect = 4e-12
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPK 194
V+GTCP C GD CE CG + T+L +PK
Sbjct: 1 VKGTCPK--CKSPDQYGDNCEVCGATYSPTELIEPK 34
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 58.0 bits (139), Expect = 1e-09
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 4/167 (2%)
Query: 31 PYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEI 90
V ++ H+G+ V + DV AR+ R GY Y+ + +A E+ S +
Sbjct: 30 ITVYDLCHIGHGRTFV-AFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAM 88
Query: 91 CDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTC 150
D+ + +I + +T E + ++L+ D
Sbjct: 89 VDRMIAEMHKDFDALNILRPDMEPRATHHIAE-IIELTEQLIAKGHAYVADNGDVMFDVP 147
Query: 151 K--RFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKC 195
+ + G + + L + +P
Sbjct: 148 TDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSW 194
Score = 41.5 bits (96), Expect = 3e-04
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 4/127 (3%)
Query: 277 VWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWT 336
+ K N G D + H + +
Sbjct: 191 EPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQY 250
Query: 337 LMKTISVTEYLNYESGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWA 396
+ + + + K SKS G D E RY+L++ S ++
Sbjct: 251 -VNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK-YYDAETVRYFLMSGHYR-SQLNYSEE 307
Query: 397 DL-QAKS 402
+L QA++
Sbjct: 308 NLKQARA 314
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus
thermophilus [TaxId: 274]}
Length = 113
Score = 51.1 bits (122), Expect = 1e-08
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 653 VGKITKVQKHPDADALYVEEIDVGEVQPRTVVSGLV-----KHIPLEEMQERMVCVLCNL 707
++ + P L +D G VVSG + L + + +
Sbjct: 9 FARVLEAHPIPGTR-LKRLVLDAGR--TVEVVSGAENARKGIGVALALPGTELPGLGQKV 65
Query: 708 KPVAMRGIKSHAMVLCAS---TSDNTKVELVEPPKSAKIGERV--AFP 750
++G++S M L + L P + G + A+P
Sbjct: 66 GERVIQGVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWP 113
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 27.8 bits (62), Expect = 0.64
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 178 CENCGKLLNATDLKDPK----CKVC 198
C CGK L +T L D CK C
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGC 26
>d1e7ua3 d.15.1.5 (A:143-321) Phoshoinositide 3-kinase (PI3K) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 179
Score = 28.7 bits (64), Expect = 1.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 565 GHKIGSPNPLFKELKDDEVEFFRSKFA 591
IG + DDE+EF R +
Sbjct: 13 NALIGYDVTDVSNVHDDELEFTRRRLV 39
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 26.3 bits (58), Expect = 2.5
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 178 CENCGKLLNATDLKD----PKCKVC 198
C C K L++T + CK C
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSC 26
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter
succinogenes [TaxId: 833]}
Length = 243
Score = 27.7 bits (61), Expect = 4.4
Identities = 9/64 (14%), Positives = 20/64 (31%)
Query: 272 EKVFYVWFDAPIGYVSITSCYTNEWEQWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGT 331
EK V A + + +T + +W + + V + N+ + +
Sbjct: 85 EKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKTEGGQVSNLTGTQGLRFNLWSSE 144
Query: 332 GENW 335
W
Sbjct: 145 SAAW 148
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 25.7 bits (57), Expect = 4.6
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 742 KIGERV-----AFPGFEGEPDDVLNPKKKVWETVQVDL---HTNTEL 780
+ G++V F F G ++V K+K+ V + + T EL
Sbjct: 6 EKGDQVRVIEGPFMNFTGTVEEVHPEKRKLT--VMISIFGRMTPVEL 50
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 28.1 bits (61), Expect = 5.3
Identities = 27/277 (9%), Positives = 68/277 (24%), Gaps = 18/277 (6%)
Query: 29 ALPYVNNVPHLGNIIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPK 88
V N+ V DVF + ++ + + +G ++ + +
Sbjct: 126 GDVLVRNLRREAETGKPVTLKDVFGAY-------SMDVITSTSFGVNIDSLNNPQDPFVE 178
Query: 89 EICDKYHVIHKDVYKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCD 148
D + F L + +
Sbjct: 179 NTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQ 238
Query: 149 TCKRFLADRLVEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTN 208
+ +++ E ++++ + + + +
Sbjct: 239 KHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFI-------FAGYETTSSVLSFIM 291
Query: 209 HLFLDLPALRNKLEEYINNMSVAGSWSQNAIQATHAWLKEGLKVRCITRDLKWGVPVPLE 268
+ P ++ KL+E I+ + + +L + + +
Sbjct: 292 YELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLE---R 348
Query: 269 RFKEKVFYVWFDAPIGY-VSITSCYTNEWEQWWKNPE 304
K+ V P G V I S + ++W PE
Sbjct: 349 VCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPE 385
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean
(Phaseolus vulgaris), phaseolin [TaxId: 3885]}
Length = 162
Score = 27.2 bits (60), Expect = 5.4
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 7/120 (5%)
Query: 644 ISIARLDIRVGKITKVQKHPDADA-LYV--EEIDVGEVQPRTVVSGLVKHIPLEEMQERM 700
+ I+ +++ G + + A L V E V V P+ L E+ +
Sbjct: 20 VLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDD 79
Query: 701 VCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVL 760
V V+ PVA++ + ++N L+ + + DVL
Sbjct: 80 VFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDN-VISSIGRALD---GKDVL 135
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 25.3 bits (56), Expect = 6.0
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 742 KIGERV-----AFPGFEGEPDDVLNPKKKVWETVQVDL---HTNTEL 780
+ G++V F F G ++ + KV V V + T EL
Sbjct: 6 REGDQVRVVSGPFADFTGTVTEINPERGKVK--VMVTIFGRETPVEL 50
>g1dgw.1 b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bean
(Canavalia ensiformis), canavalin/vinculin [TaxId:
3823]}
Length = 168
Score = 26.9 bits (59), Expect = 6.6
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 14/119 (11%)
Query: 643 EISIARLDIRVGKITKVQKHPDADA-LYVEEIDVGEVQPRTVVSGLVKHIPLEEMQERMV 701
+I + L + G + + A L E G + +V + E +
Sbjct: 35 DILLNCLQMNEGALFVPHYNSRATVILVANE---GRAE-VELVGLEQLRRYAATLSEGDI 90
Query: 702 CVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVL 760
V+ + PVA++ MV ++N + + K P V
Sbjct: 91 IVIPSSFPVALKAASDLNMVGIGVNAENNERNFLAGHKEN------VIRQI---PRQVS 140
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 27.5 bits (60), Expect = 7.5
Identities = 21/171 (12%), Positives = 47/171 (27%), Gaps = 10/171 (5%)
Query: 42 IIGSVLSADVFARFCRLRGYNAIYICGTDEYGTATETKAMEDNCSPKEICDKY-HVIHKD 100
I+G+ S V R +G+ I D G + + + H+ H D
Sbjct: 7 IVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSET--NVMVHVYGPHIFHTD 64
Query: 101 V--YKWFDISFDNFGRTSTPQQTEACQAIFKKLLDNNWLIENTMQQPYCDTCKRFLADRL 158
+ + +F ++ + + + + D + +A++
Sbjct: 65 NETVWNYVNKHAEMMPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEK- 123
Query: 159 VEGTCPFEGCNYESARGDQCENCGKLLNATDLKDPKCKVCRNAPQIRDTNH 209
+ ++ + GK L K K P +
Sbjct: 124 ----GDSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASI 170
>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 164
Score = 26.7 bits (58), Expect = 7.8
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 533 KQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHK-IGSPNPLFKELKDDEVEFFRSKFA 591
+ + + + DE ++ R G I + + + +E F A
Sbjct: 109 HKTGVPFSQMVFFDDENRNIIDVGR------LGVTCIHIRDGMSLQTLTQGLETFAKAQA 162
Query: 592 G 592
G
Sbjct: 163 G 163
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 120
Score = 26.0 bits (56), Expect = 8.9
Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 8/62 (12%)
Query: 147 CDTCKRFLADRLVEGTCPFEGCNYESARGD--------QCENCGKLLNATDLKDPKCKVC 198
C C FL + C D +C+ + +C C
Sbjct: 19 CVNCSHFLRGQECVEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAAC 78
Query: 199 RN 200
+
Sbjct: 79 AH 80
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex
aeolicus [TaxId: 63363]}
Length = 126
Score = 26.0 bits (57), Expect = 9.3
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 435 DANGAESHQLTKTLAEKVGKYVEQYLEAME-------KVKLKQGLKTAMSISSEGNAYLQ 487
A + L +K + +E+ +E + + + + + I S ++L
Sbjct: 11 MVETATPLEQIILLYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLD 70
Query: 488 ESQFWKLYK 496
+ ++ K
Sbjct: 71 HEKGKEIAK 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.407
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,060,200
Number of extensions: 149750
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 43
Length of query: 807
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 714
Effective length of database: 1,130,706
Effective search space: 807324084
Effective search space used: 807324084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)