BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003612
(807 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 153/323 (47%), Gaps = 29/323 (8%)
Query: 36 SLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFS 95
+ ++NG ++ + IHYPR + W I K G + + VFWN HEP+ G++DF+
Sbjct: 14 TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYDFA 73
Query: 96 GRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMK 155
G++D+ F + Q G YV +R GP++ EW GGLP+WL I R + + +K
Sbjct: 74 GQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQDPYYXERVK 133
Query: 156 RYATMIVNMMKAARLYASQGGPIILSQIENEYGM--VEHSFLEKGPPYVRWAAKLAVDLQ 213
+ + + A L S+GG II Q+ENEYG ++ ++ + V+ A
Sbjct: 134 LFLNEVGKQL--ADLQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGF------ 185
Query: 214 TGVPWVMCK-----QDDAPDPV---INACNGRQCGETFAGPNS--PDKPAIWTENWTSFY 263
TGVP C +++A D + IN G E F PD P +E W+ ++
Sbjct: 186 TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWF 245
Query: 264 QVYGDEARIRSAEDIAYHVALFIAKMKGSYVNYYMYHGGTNFGRTASAY------VLTGY 317
+G + RSAE++ + + + Y HGGT+FG A T Y
Sbjct: 246 DHWGAKHETRSAEELVKGXKEXLD--RNISFSLYXTHGGTSFGHWGGANFPNFSPTCTSY 303
Query: 318 YDQAPLDEYGLLRQPKWGHLKEL 340
AP++E G + PK+ ++ L
Sbjct: 304 DYDAPINESGKV-TPKYLEVRNL 325
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 32/219 (14%)
Query: 454 TKDASDYLWYN--FRFKHDPSDSESVLKVSSLGHVLHAFINGEFVGSAHGKHSDKSFTLE 511
T +A D W + +R SD E L ++ F+NG+ + + K +
Sbjct: 374 TXEAFDQGWGSILYRTSLSASDKEQTLLITEAHDWAQVFLNGKKLATLS---RLKGEGVV 430
Query: 512 KMVHLINGTNNVSLLSVMVGLPDSGAYLERRVAGLRNVSIQ---GAKELKDFSSFSWGYQ 568
K+ L G + + +L G + G + V +Q G + +KD+ ++
Sbjct: 431 KLPPLKEG-DRLDILVEAXGRXNFGKGIYDWKGITEKVELQSDKGVELVKDWQVYT---- 485
Query: 569 VGLLGEKLQIFTDYG-SRIVPWSRYGSSTHQPLTWYKTVFDAPTGSDPVAINLISMGKGE 627
I DY +R + + ++ +QP +Y++ F+ D +N + KG
Sbjct: 486 ---------IPVDYSFARDKQYKQQENAENQP-AYYRSTFNLNELGDTF-LNXXNWSKGX 534
Query: 628 AWVNGQSIGRYWVSFLTPQGTPSQSWYHIPRSFLKPTGN 666
WVNG +IGRYW + PQ T ++P +LK N
Sbjct: 535 VWVNGHAIGRYWE--IGPQQT-----LYVPGCWLKKGEN 566
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 143/320 (44%), Gaps = 26/320 (8%)
Query: 30 VTYDGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQP 89
+ Y S + +G SGSIHY R W + K K GL+ +QT V WN HEP P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 90 GQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEP 149
GQ+ FS D+ F++ GL V LR GP+I EW GGLP WL + I+ RS +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 150 FKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEKGPPYVRWAAK-- 207
+ + ++ +++ MK L GGP+I Q+ENEYG S+ Y+R+ K
Sbjct: 131 YLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYG----SYFACDFDYLRFLQKRF 184
Query: 208 ---LAVDLQTGV------PWVMCKQDDAPDPVINACNGRQCGETFAGPN--SPDKPAIWT 256
L D+ ++ C ++ G + F P P I +
Sbjct: 185 RHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINS 244
Query: 257 ENWTSFYQVYGDEARIRSAEDIAYHVALFIAKMKGSYVNYYMYHGGTNF-----GRTASA 311
E +T + +G E +A +L+ +G+ VN YM+ GGTNF + A
Sbjct: 245 EFYTGWLDHWGQPHSTIKTEAVA--SSLYDILARGASVNLYMFIGGTNFAYWNGANSPYA 302
Query: 312 YVLTGYYDQAPLDEYGLLRQ 331
T Y APL E G L +
Sbjct: 303 AQPTSYDYDAPLSEAGDLTE 322
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 581 DYGSRIVPWSRYGSSTHQPLTWYKTVFDAPTG----SDPVAINLISMGKGEAWVNGQSIG 636
D G W+ + SS + +Y F P+G I KG+ W+NG ++G
Sbjct: 508 DSGHHDEAWA-HNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLG 566
Query: 637 RYW 639
RYW
Sbjct: 567 RYW 569
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 138/316 (43%), Gaps = 41/316 (12%)
Query: 39 INGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRR 98
++G + SG+IHY R P+ W + K G + V+T V WNLHEP G+F F G
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 99 DLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYA 158
DL +F++ Q GLY +R PFI EW +GGLP WL + RS + + + RY
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLL-TKNMRIRSSDPAYIEAVGRYY 130
Query: 159 TMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEKGPPYVRWAAKLAVDLQTGVPW 218
++ + GG I++ Q+ENEYG S+ E Y+R +L + P
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEYG----SYGED-KAYLRAIRQLMEECGVTCPL 183
Query: 219 VMCKQDDAP-------------DPVINACNGRQC------GETFAGPNSPDKPAIWTENW 259
D P D + G + + F + P + E W
Sbjct: 184 FTS---DGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFW 240
Query: 260 TSFYQVYGDEARIRSAEDIAYHVALFIAKMKGSYVNYYMYHGGTNFG--------RTASA 311
++ + + R +++A V + + GS +N YM+HGGTNFG T
Sbjct: 241 DGWFNRWKEPIITRDPKELADAVREVLEQ--GS-INLYMFHGGTNFGFMNGCSARGTLDL 297
Query: 312 YVLTGYYDQAPLDEYG 327
+T Y A LDE G
Sbjct: 298 PQVTSYDYDALLDEEG 313
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 618 INLISMGKGEAWVNGQSIGRYWVSFLTPQGTPSQSWYHIPRSFLKPTGN 666
++L GKG A+VNGQ++GR+W P+ S Y IP S+LK N
Sbjct: 523 LDLSEFGKGVAFVNGQNLGRFW------NVGPTLSLY-IPHSYLKEGAN 564
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 161/407 (39%), Gaps = 49/407 (12%)
Query: 30 VTYDGRSLIINGHRKILFSGSIH-YPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ 88
VT+D S+ +NG R ++FSG +H Y ++ + K K G + V V W L E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 89 PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNE 148
PG + G DL F + G+Y+ R GP+I E GG P WL V GI+ R+ +E
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGIL-RTSDE 124
Query: 149 PFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEY--------GMVEHSFLEKGPP 200
+ YA+ I + A++ + GGPIIL Q ENEY G + S+++
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 201 YVRWAAKLAVDLQTGVPWVMCKQDDAPDPVINACN---------GRQCGETFAGPN---- 247
+ R A + V + W +AP A + G C P+
Sbjct: 183 HAR-DAGIVVPFISNDAWAAGH--NAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLP 239
Query: 248 ----------SPDKPAIWTENWTSFYQVYGDEARIRSAEDIAYHVALFIAKMKGS----Y 293
SP P E + +G + A + + K S +
Sbjct: 240 TYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAF 299
Query: 294 VNYYMYHGGTNFGRTASAYVLTGYYDQAPLDEYGLLRQPKWGHLKELHSAVK-----LCL 348
+N YM GGTN+G T Y + + E + + K+ LK L + K L
Sbjct: 300 LNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVA 359
Query: 349 KPMLSGVLVSMNFSKLQEAFIFQGSSECAAFLV--NKDKRNNATVYF 393
P N + L + +S ++F V + D + A+V +
Sbjct: 360 NPGDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSDYSSQASVEY 406
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 4/193 (2%)
Query: 28 NNVTYDGRSLIINGHRKILFSGSIH-YPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHE 86
N VT+D SL ++G R ++FSG +H + P ++ + K K G + V V W L E
Sbjct: 24 NIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLE 83
Query: 87 PQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSD 146
+PG+F G L F + G+Y+ R GP+I E GG P WL V G + R+D
Sbjct: 84 GKPGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGKL-RTD 142
Query: 147 NEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEKGPPYVRWAA 206
+ Y I +++ A++ + GGP+IL Q ENEY L PY+++
Sbjct: 143 APDYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVI 200
Query: 207 KLAVDLQTGVPWV 219
A + VP +
Sbjct: 201 DQARNAGIIVPLI 213
>pdb|2ZX0|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX0|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|B Chain B, Rhamnose-Binding Lectin Csl3
Length = 195
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 724 RPKVQI-RCPSGRKISKILFASYGNPNGNCENYAIGSCHSSNSRAIVEKACLGKRSCTVP 782
R +++I R GR+ + S G P+ +N +C S ++ + + + C GKR C V
Sbjct: 117 RGEIRIQRANYGRRQHDV--CSIGRPHQQLKN---TNCLSQSTTSKMAERCDGKRQCIVK 171
Query: 783 VWTEKFYGDPCPGIPKALLVDAQC 806
V + +GDPC G K L V C
Sbjct: 172 V-SNSVFGDPCVGTYKYLDVAYTC 194
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 726 KVQI-RCPSGRKISKILFASYGNPNGNCENYAIGSCHSSNSRAIVEKACLGKRSCTVPVW 784
K+ I R GR+ + S G P+ + +C S +S + + + C GK C VP
Sbjct: 19 KIHIKRANYGRRQHDV--CSIGRPDNQLTD---TNCLSQSSTSKMAERCGGKSECIVPA- 72
Query: 785 TEKFYGDPCPGIPKALLVDAQC 806
+ +GDPC G K L C
Sbjct: 73 SNFVFGDPCVGTYKYLDTKYSC 94
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 30 VTYDGR-SLIINGHRKILFSGSIH----YPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNL 84
VT DGR +L ++G + + ++ +P ++WP + ++ G + VQ + W
Sbjct: 43 VTKDGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAI----EKVGANTVQVPIAWEQ 98
Query: 85 HEPQPGQFDFS 95
EP GQFDFS
Sbjct: 99 IEPVEGQFDFS 109
>pdb|1B30|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
1,2- (4-Deoxy-Beta-L-Threo-Hex-4-Enopyranosyluronic
Acid)-Beta- 1,4-Xylotriose)
pdb|1B31|A Chain A, Xylanase From Penicillium Simplicissimum, Native With
Peg200 As Cryoprotectant
pdb|1B3V|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylose
pdb|1B3W|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylobiose
pdb|1B3X|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotriose
pdb|1B3Y|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylotetraose
pdb|1B3Z|A Chain A, Xylanase From Penicillium Simplicissimum, Complex With
Xylopentaose
pdb|1BG4|A Chain A, Xylanase From Penicillium Simplicissimum
Length = 302
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 28/133 (21%)
Query: 82 WNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGE---WGYGGLPFWLHDV 138
W+ EP GQF FSG LV F + G I G W + LP W+ +
Sbjct: 52 WDATEPNRGQFTFSGSDYLVNFAQSN-----------GKLIRGHTLVW-HSQLPGWVSSI 99
Query: 139 PGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEK- 197
+D +K + T ++ K ++YA +L++I NE G + +S
Sbjct: 100 ------TDKNTLISVLKNHITTVMTRYK-GKIYAWD----VLNEIFNEDGSLRNSVFYNV 148
Query: 198 -GPPYVRWAAKLA 209
G YVR A + A
Sbjct: 149 IGEDYVRIAFETA 161
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 727 VQIRCPSGRKISKILFASYGNPNGN-CENYAIG----SCHSSNSRAIVEKACLGKRSCTV 781
+++RCP G + + A+YG + C+ C+ ++ I+ + C + C V
Sbjct: 18 IELRCP-GSDVIMVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVV 76
Query: 782 PVWTEKFYGDPCPGIPKALLVDAQC 806
++ F DPCPG K L V C
Sbjct: 77 VAGSDAF-PDPCPGTYKYLEVQYDC 100
>pdb|3URB|A Chain A, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
pdb|3URB|B Chain B, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
pdb|3URQ|A Chain A, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
WITH Cyclohexyl Methylphosphonate Inhibitor
pdb|3URQ|B Chain B, Crystal Structure Of Pte Mutant
H254gH257WL303TM317LI106CF132IL271IK185RI274NA80VR67H
WITH Cyclohexyl Methylphosphonate Inhibitor
Length = 327
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A +E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALVEKAVRGLRRARAAGVRTIVDVSTFDCGRDVSLLAE 81
>pdb|3URA|A Chain A, Crystal Structure Of Pte Mutant
H254gH257WL303TK185RI274NA80VS61T
pdb|3URA|B Chain B, Crystal Structure Of Pte Mutant
H254gH257WL303TK185RI274NA80VS61T
pdb|3URN|A Chain A, Crystal Structure Of Pte Mutant
H254gH257WL303TK185RI274NA80VS61T WITH CYCLOHEXYL
Methylphosphonate Inhibitor
pdb|3URN|B Chain B, Crystal Structure Of Pte Mutant
H254gH257WL303TK185RI274NA80VS61T WITH CYCLOHEXYL
Methylphosphonate Inhibitor
Length = 327
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A +E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALVEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|3UR2|A Chain A, Crystal Structure Of Pte Mutant
H254gH257WL303TK185RI274NA80V
pdb|3UR2|B Chain B, Crystal Structure Of Pte Mutant
H254gH257WL303TK185RI274NA80V
Length = 329
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A +E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALVEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|2OSY|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
pdb|2OSY|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
Enzyme Intermediate
Length = 481
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 33 DGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKA-KEGGLDVVQTLVFWNLHEPQPGQ 91
DGRSLI+ G S + P PQ +A+ + G + V+ L+ W EP PG
Sbjct: 41 DGRSLILRGFNTA--SSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGV 98
Query: 92 FD 93
+D
Sbjct: 99 YD 100
>pdb|2OSX|A Chain A, Endo-glycoceramidase Ii From Rhodococcus Sp.: Ganglioside
Gm3 Complex
Length = 481
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 33 DGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKA-KEGGLDVVQTLVFWNLHEPQPGQ 91
DGRSLI+ G S + P PQ +A+ + G + V+ L+ W EP PG
Sbjct: 41 DGRSLILRGFNTA--SSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGV 98
Query: 92 FD 93
+D
Sbjct: 99 YD 100
>pdb|2OSW|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OSW|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.
pdb|2OYK|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYK|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Isofagomine Complex
pdb|2OYL|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYL|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Cellobiose-Like Imidazole Complex
pdb|2OYM|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
pdb|2OYM|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
Five-Membered Iminocyclitol Complex
Length = 481
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 33 DGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKA-KEGGLDVVQTLVFWNLHEPQPGQ 91
DGRSLI+ G S + P PQ +A+ + G + V+ L+ W EP PG
Sbjct: 41 DGRSLILRGFNTA--SSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGV 98
Query: 92 FD 93
+D
Sbjct: 99 YD 100
>pdb|3A3W|A Chain A, Structure Of Opda Mutant
(G60aA80VS92AR118QK185RQ206PD208GI260TG273S) WITH
Diethyl 4-Methoxyphenyl Phosphate Bound In The Active
Site
pdb|3A3X|A Chain A, Structure Of Opda Mutant
(G60aA80VR118QK185RQ206PD208GI260TG273S)
Length = 329
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGEKLQ 577
A +E+ V GLR+ G + + D S+F G V LL E Q
Sbjct: 46 ALVEKAVRGLRHARAAGVQTIVDVSTFDIGRDVRLLAEVSQ 86
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 65 IAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKE 106
+ + K GG D V V+W + E + P Q+D+S R+L + +K+
Sbjct: 40 LKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKK 82
>pdb|4E3T|A Chain A, Round 18 Arylesterase Variant Of Phosphotriesterase With
Bound Transition State Analog
pdb|4E3T|B Chain B, Round 18 Arylesterase Variant Of Phosphotriesterase With
Bound Transition State Analog
Length = 333
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A +E+ V GLR G + + D S+F G V LL E
Sbjct: 46 ALVEKAVRGLRRARAAGVRTIVDVSTFDLGRDVRLLAE 83
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 49 GSIHYPRSTP-QMWPRLIAKAKEGGLDVVQTLVF-WNLHEPQPGQFDFSGRRDLVRFIKE 106
G +YP P + W + +E GL V+ F W L EP+PG+ ++ L I
Sbjct: 3 GVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGW---LDEAIAT 59
Query: 107 VQAQGLYVCL 116
+ A+GL V L
Sbjct: 60 LAAEGLKVVL 69
>pdb|3UR5|A Chain A, Crystal Structure Of Pte Mutant K185rI274N
pdb|3UR5|B Chain B, Crystal Structure Of Pte Mutant K185rI274N
Length = 327
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|1PTA|A Chain A, Three-Dimensional Structure Of Phosphotriesterase: An
Enzyme Capable Of Detoxifying Organophosphate Nerve
Agents
Length = 327
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 43 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 80
>pdb|2O4Q|A Chain A, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|B Chain B, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|K Chain K, Structure Of Phosphotriesterase Mutant G60a
pdb|2O4Q|P Chain P, Structure Of Phosphotriesterase Mutant G60a
pdb|3CS2|A Chain A, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|B Chain B, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|K Chain K, Crystal Structure Of Pte G60a Mutant
pdb|3CS2|P Chain P, Crystal Structure Of Pte G60a Mutant
Length = 331
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 45 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 82
>pdb|1DPM|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4- Methylbenzylphosphonate
pdb|1DPM|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog Diethyl
4- Methylbenzylphosphonate
Length = 329
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|2OB3|A Chain A, Structure Of Phosphotriesterase Mutant H257yL303T
pdb|2OB3|B Chain B, Structure Of Phosphotriesterase Mutant H257yL303T
Length = 330
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|1EYW|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Triethylphosphate
pdb|1EZ2|A Chain A, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate.
pdb|1EZ2|B Chain B, Three-Dimensional Structure Of The Zinc-Containing
Phosphotriesterase With Bound Substrate Analog
Diisopropylmethyl Phosphonate.
pdb|3CAK|A Chain A, X-Ray Structure Of Wt Pte With Ethyl Phosphate
pdb|3CAK|B Chain B, X-Ray Structure Of Wt Pte With Ethyl Phosphate
Length = 331
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|1QW7|A Chain A, Structure Of An Engineered Organophosphorous Hydrolase
With Increased Activity Toward Hydrolysis Of
Phosphothiolate Bonds
pdb|1QW7|B Chain B, Structure Of An Engineered Organophosphorous Hydrolase
With Increased Activity Toward Hydrolysis Of
Phosphothiolate Bonds
Length = 336
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 49 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 86
>pdb|1JGM|A Chain A, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1JGM|B Chain B, High Resolution Structure Of The Cadmium-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 336
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 49 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 86
>pdb|3UPM|A Chain A, Crystal Structure Of Pte Mutant H254qH257FK185RI274N
pdb|3UPM|B Chain B, Crystal Structure Of Pte Mutant H254qH257FK185RI274N
Length = 327
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|1HZY|A Chain A, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1HZY|B Chain B, High Resolution Structure Of The Zinc-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0B|A Chain A, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0B|B Chain B, High Resolution Structure Of The Manganese-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|A Chain A, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
pdb|1I0D|B Chain B, High Resolution Structure Of The ZincCADMIUM-Containing
Phosphotriesterase From Pseudomonas Diminuta
Length = 332
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 45 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 82
>pdb|2OQL|A Chain A, Structure Of Phosphotriesterase Mutant H254qH257F
pdb|2OQL|B Chain B, Structure Of Phosphotriesterase Mutant H254qH257F
Length = 331
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 44 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 81
>pdb|3E3H|A Chain A, Crystal Structure Of The Op Hydrolase Mutant From
Brevundimonas Diminuta
pdb|3E3H|B Chain B, Crystal Structure Of The Op Hydrolase Mutant From
Brevundimonas Diminuta
Length = 336
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 49 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 86
>pdb|1PSC|A Chain A, Phosphotriesterase From Pseudomonas Diminuta
pdb|1PSC|B Chain B, Phosphotriesterase From Pseudomonas Diminuta
Length = 365
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 78 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 115
>pdb|1P6B|A Chain A, X-Ray Structure Of Phosphotriesterase, Triple Mutant
H254gH257WL303T
pdb|1P6B|B Chain B, X-Ray Structure Of Phosphotriesterase, Triple Mutant
H254gH257WL303T
pdb|1P6C|A Chain A, Crystal Structure Of Phosphotriesterase Triple Mutant
H254gH257WL303T COMPLEXED WITH
Diisopropylmethylphosphonate
pdb|1P6C|B Chain B, Crystal Structure Of Phosphotriesterase Triple Mutant
H254gH257WL303T COMPLEXED WITH
Diisopropylmethylphosphonate
Length = 336
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 49 ALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAE 86
>pdb|2O4M|A Chain A, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|B Chain B, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|C Chain C, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|P Chain P, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
Length = 331
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 537 AYLERRVAGLRNVSIQGAKELKDFSSFSWGYQVGLLGE 574
A E+ V GLR G + + D S+F G V LL E
Sbjct: 45 ALAEKAVRGLRRARAAGVRTIVDVSTFDGGRDVSLLAE 82
>pdb|3MYW|I Chain I, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 72
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 748 PNGNCENYAIGSCHSSNSRAIVEKACLGKRSCTVPVWTEKFYGDPCPGIPK 798
P +C N + SCHS+ I ++ GK C + T+ F PC + K
Sbjct: 24 PQCHCANIRLNSCHSACKSCICTRSMPGKCRC---LDTDDFCYKPCESMDK 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,659,300
Number of Sequences: 62578
Number of extensions: 1132189
Number of successful extensions: 2466
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2422
Number of HSP's gapped (non-prelim): 44
length of query: 807
length of database: 14,973,337
effective HSP length: 107
effective length of query: 700
effective length of database: 8,277,491
effective search space: 5794243700
effective search space used: 5794243700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)