Query 003612
Match_columns 807
No_of_seqs 352 out of 1940
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-200 2E-205 1735.3 73.1 771 27-807 27-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-150 5E-155 1265.6 40.7 630 27-698 17-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2E-86 4.3E-91 723.1 21.4 298 36-343 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.3E-38 2.8E-43 369.5 8.7 293 30-329 1-332 (673)
5 PF02140 Gal_Lectin: Galactose 99.8 2.4E-20 5.3E-25 163.7 6.0 76 729-806 1-80 (80)
6 KOG4729 Galactoside-binding le 99.8 4.4E-20 9.6E-25 189.5 8.1 86 721-807 40-130 (265)
7 PF02449 Glyco_hydro_42: Beta- 99.7 1.3E-18 2.9E-23 194.7 8.2 144 53-211 3-162 (374)
8 PF02836 Glyco_hydro_2_C: Glyc 99.5 2.6E-12 5.5E-17 139.8 19.6 153 30-223 1-159 (298)
9 PRK10150 beta-D-glucuronidase; 99.3 3.9E-10 8.4E-15 134.3 27.2 159 28-221 276-448 (604)
10 PRK10340 ebgA cryptic beta-D-g 99.1 1.6E-09 3.4E-14 135.4 17.8 150 28-219 318-473 (1021)
11 PRK09525 lacZ beta-D-galactosi 99.1 2.2E-09 4.9E-14 133.9 18.7 148 28-221 334-488 (1027)
12 PF00150 Cellulase: Cellulase 99.0 3.1E-09 6.8E-14 113.2 15.3 160 40-221 4-171 (281)
13 PF13364 BetaGal_dom4_5: Beta- 99.0 4.9E-10 1.1E-14 104.7 7.1 69 597-671 33-104 (111)
14 COG3250 LacZ Beta-galactosidas 99.0 6.2E-09 1.3E-13 125.8 15.8 120 28-189 284-409 (808)
15 PF13364 BetaGal_dom4_5: Beta- 98.4 1.1E-06 2.3E-11 82.3 8.6 84 448-532 24-110 (111)
16 PF03198 Glyco_hydro_72: Gluca 98.2 1.1E-05 2.5E-10 87.1 13.1 150 28-218 9-179 (314)
17 smart00633 Glyco_10 Glycosyl h 98.1 6.7E-06 1.5E-10 87.8 8.0 116 82-222 3-125 (254)
18 PLN02705 beta-amylase 98.0 1.5E-05 3.2E-10 91.7 8.5 120 57-184 266-415 (681)
19 TIGR03356 BGL beta-galactosida 98.0 1.7E-05 3.8E-10 90.8 8.9 109 59-188 54-163 (427)
20 PLN02905 beta-amylase 98.0 2E-05 4.2E-10 91.0 8.8 120 57-184 284-433 (702)
21 PLN02801 beta-amylase 97.9 2.6E-05 5.6E-10 88.6 8.8 120 57-184 35-184 (517)
22 PLN02803 beta-amylase 97.9 3.2E-05 7E-10 88.2 9.5 119 57-184 105-253 (548)
23 PLN00197 beta-amylase; Provisi 97.9 3.8E-05 8.1E-10 87.9 9.3 119 57-184 125-273 (573)
24 PLN02161 beta-amylase 97.9 3.7E-05 8E-10 87.3 9.1 119 57-184 115-263 (531)
25 PF02837 Glyco_hydro_2_N: Glyc 97.7 0.00013 2.7E-09 72.5 9.3 95 455-551 64-163 (167)
26 PF13204 DUF4038: Protein of u 97.7 0.00016 3.5E-09 78.8 10.1 152 34-214 2-178 (289)
27 PF01373 Glyco_hydro_14: Glyco 97.6 6.1E-05 1.3E-09 84.2 4.7 115 60-184 17-153 (402)
28 PF00331 Glyco_hydro_10: Glyco 97.1 0.00073 1.6E-08 74.7 6.3 157 46-223 11-179 (320)
29 COG2730 BglC Endoglucanase [Ca 97.1 0.0018 4E-08 73.9 9.5 115 57-189 66-193 (407)
30 PRK15014 6-phospho-beta-glucos 97.0 0.0021 4.5E-08 74.9 8.7 108 59-187 69-179 (477)
31 PF00232 Glyco_hydro_1: Glycos 97.0 0.0008 1.7E-08 78.0 5.3 111 58-189 57-169 (455)
32 PF07745 Glyco_hydro_53: Glyco 96.9 0.0029 6.2E-08 70.2 9.1 105 62-189 27-137 (332)
33 PRK13511 6-phospho-beta-galact 96.9 0.0023 5.1E-08 74.4 8.7 109 59-189 54-163 (469)
34 TIGR01233 lacG 6-phospho-beta- 96.9 0.0024 5.3E-08 74.1 8.8 109 59-189 53-162 (467)
35 PLN02814 beta-glucosidase 96.9 0.0025 5.4E-08 74.6 8.3 111 58-189 76-188 (504)
36 COG3693 XynA Beta-1,4-xylanase 96.9 0.0053 1.2E-07 66.7 9.8 133 68-223 55-194 (345)
37 PRK09852 cryptic 6-phospho-bet 96.8 0.003 6.5E-08 73.5 8.3 97 58-166 70-169 (474)
38 PF14488 DUF4434: Domain of un 96.7 0.026 5.7E-07 56.7 13.3 135 54-218 15-157 (166)
39 PLN02998 beta-glucosidase 96.7 0.0034 7.3E-08 73.4 8.0 111 58-189 81-193 (497)
40 PRK09589 celA 6-phospho-beta-g 96.6 0.0054 1.2E-07 71.5 8.6 97 59-167 67-166 (476)
41 PRK09593 arb 6-phospho-beta-gl 96.6 0.0064 1.4E-07 70.9 9.0 97 59-167 73-172 (478)
42 COG3867 Arabinogalactan endo-1 96.6 0.011 2.4E-07 63.3 9.6 112 61-189 65-183 (403)
43 PLN02849 beta-glucosidase 96.5 0.0063 1.4E-07 71.3 8.1 97 58-166 78-176 (503)
44 PF02837 Glyco_hydro_2_N: Glyc 96.4 0.0063 1.4E-07 60.3 6.2 67 597-671 66-136 (167)
45 PRK10150 beta-D-glucuronidase; 95.7 0.06 1.3E-06 64.8 11.4 73 456-530 62-137 (604)
46 COG2723 BglB Beta-glucosidase/ 95.7 0.035 7.6E-07 63.7 8.8 97 58-166 58-157 (460)
47 COG3934 Endo-beta-mannanase [C 95.0 0.02 4.4E-07 64.9 3.8 158 36-211 3-169 (587)
48 PRK09525 lacZ beta-D-galactosi 94.7 0.14 3E-06 65.2 10.6 90 458-552 119-216 (1027)
49 PF14871 GHL6: Hypothetical gl 94.6 0.21 4.5E-06 48.4 9.2 73 63-140 4-85 (132)
50 PRK10340 ebgA cryptic beta-D-g 94.6 0.11 2.4E-06 66.0 9.5 90 458-552 108-204 (1021)
51 PF02638 DUF187: Glycosyl hydr 94.0 0.24 5.3E-06 54.7 9.4 118 57-184 17-161 (311)
52 PF01229 Glyco_hydro_39: Glyco 92.2 0.33 7.1E-06 57.0 7.5 142 51-209 31-187 (486)
53 COG1649 Uncharacterized protei 92.1 0.93 2E-05 51.8 10.6 124 56-188 61-210 (418)
54 TIGR01515 branching_enzym alph 91.5 2 4.2E-05 52.1 13.1 155 62-220 159-347 (613)
55 smart00642 Aamy Alpha-amylase 91.5 0.55 1.2E-05 47.1 7.2 68 58-125 18-97 (166)
56 KOG2230 Predicted beta-mannosi 90.3 0.87 1.9E-05 53.0 8.0 149 35-223 328-494 (867)
57 PRK14706 glycogen branching en 90.0 4.8 0.0001 48.9 14.5 51 65-118 174-237 (639)
58 TIGR00542 hxl6Piso_put hexulos 89.5 6.1 0.00013 42.5 13.7 127 58-216 15-149 (279)
59 PF13200 DUF4015: Putative gly 89.3 1.6 3.6E-05 48.3 9.0 111 57-168 11-136 (316)
60 PF11875 DUF3395: Domain of un 86.7 0.9 2E-05 45.0 4.6 65 740-806 55-133 (151)
61 PRK12568 glycogen branching en 86.1 11 0.00025 46.3 14.3 54 63-119 274-340 (730)
62 PF00128 Alpha-amylase: Alpha 85.0 1 2.3E-05 48.1 4.5 57 62-118 7-72 (316)
63 PF05913 DUF871: Bacterial pro 84.9 1.5 3.4E-05 49.3 5.8 72 47-124 2-73 (357)
64 PRK14705 glycogen branching en 83.5 17 0.00036 47.4 14.8 52 63-117 770-834 (1224)
65 PF14587 Glyco_hydr_30_2: O-Gl 83.5 10 0.00022 43.1 11.4 140 69-223 57-227 (384)
66 PLN02960 alpha-amylase 82.5 33 0.00071 43.1 16.1 57 62-118 420-486 (897)
67 TIGR01531 glyc_debranch glycog 82.2 4.5 9.8E-05 52.5 8.9 113 35-152 103-234 (1464)
68 PRK09936 hypothetical protein; 82.1 3.4 7.4E-05 45.0 6.8 59 54-118 33-92 (296)
69 PRK05402 glycogen branching en 81.2 14 0.00031 45.6 12.7 51 65-118 272-335 (726)
70 KOG4729 Galactoside-binding le 81.0 4.2 9E-05 43.4 6.8 172 617-807 45-231 (265)
71 smart00812 Alpha_L_fucos Alpha 80.9 1.1E+02 0.0024 35.0 22.6 241 56-350 81-336 (384)
72 cd06593 GH31_xylosidase_YicI Y 80.1 3.8 8.3E-05 45.0 6.6 70 56-125 21-93 (308)
73 PRK09441 cytoplasmic alpha-amy 79.6 6.9 0.00015 45.9 8.9 61 58-118 18-101 (479)
74 TIGR02402 trehalose_TreZ malto 78.9 3.7 8E-05 49.0 6.4 54 62-118 114-180 (542)
75 cd06592 GH31_glucosidase_KIAA1 78.7 6 0.00013 43.6 7.6 69 54-125 25-97 (303)
76 PF01261 AP_endonuc_2: Xylose 78.4 11 0.00024 37.7 9.0 124 65-216 1-128 (213)
77 PLN02447 1,4-alpha-glucan-bran 78.3 4.9 0.00011 49.6 7.2 59 59-118 251-320 (758)
78 PRK13210 putative L-xylulose 5 78.0 17 0.00036 39.0 10.7 131 59-216 16-149 (284)
79 cd00019 AP2Ec AP endonuclease 77.9 19 0.00042 38.6 11.1 54 59-116 10-64 (279)
80 PF02679 ComA: (2R)-phospho-3- 77.8 4 8.6E-05 43.6 5.6 52 58-119 83-134 (244)
81 KOG0626 Beta-glucosidase, lact 77.0 4.2 9.1E-05 47.7 5.9 109 59-188 91-203 (524)
82 PRK12313 glycogen branching en 75.4 6 0.00013 48.1 6.9 51 65-118 177-240 (633)
83 PRK09856 fructoselysine 3-epim 75.2 67 0.0014 34.2 14.3 130 59-216 13-145 (275)
84 COG0296 GlgB 1,4-alpha-glucan 74.4 6.4 0.00014 47.5 6.6 58 57-117 163-233 (628)
85 PRK10933 trehalose-6-phosphate 73.5 7.8 0.00017 46.4 7.2 57 60-118 34-101 (551)
86 TIGR03234 OH-pyruv-isom hydrox 72.8 67 0.0014 33.9 13.5 43 60-116 15-57 (254)
87 TIGR03849 arch_ComA phosphosul 71.8 13 0.00028 39.7 7.5 53 57-119 69-121 (237)
88 PRK10785 maltodextrin glucosid 71.7 8 0.00017 46.7 6.8 58 61-118 181-246 (598)
89 TIGR02403 trehalose_treC alpha 71.3 6.8 0.00015 46.7 6.0 61 58-119 26-96 (543)
90 TIGR02104 pulA_typeI pullulana 71.0 7.7 0.00017 46.9 6.5 55 63-118 168-249 (605)
91 PRK14582 pgaB outer membrane N 70.6 18 0.00039 44.3 9.3 111 58-187 333-468 (671)
92 PF04914 DltD_C: DltD C-termin 70.6 9.9 0.00022 36.8 5.8 52 98-168 36-88 (130)
93 PF02065 Melibiase: Melibiase; 70.4 29 0.00062 39.9 10.5 118 51-169 50-183 (394)
94 PRK09505 malS alpha-amylase; R 70.2 10 0.00022 46.5 7.2 59 61-119 232-313 (683)
95 TIGR02456 treS_nterm trehalose 70.1 10 0.00022 45.2 7.1 60 58-118 27-96 (539)
96 PF08531 Bac_rhamnosid_N: Alph 69.5 4.9 0.00011 40.5 3.7 48 617-671 7-62 (172)
97 cd06591 GH31_xylosidase_XylS X 69.1 9.4 0.0002 42.3 6.2 66 57-123 22-91 (319)
98 PF12876 Cellulase-like: Sugar 68.8 6 0.00013 35.2 3.7 49 172-220 5-62 (88)
99 PF11324 DUF3126: Protein of u 68.2 13 0.00028 31.5 5.2 24 482-505 25-48 (63)
100 PRK09989 hypothetical protein; 68.0 57 0.0012 34.6 11.7 43 60-116 16-58 (258)
101 cd06602 GH31_MGAM_SI_GAA This 67.8 11 0.00024 42.2 6.4 74 51-125 13-93 (339)
102 cd06589 GH31 The enzymes of gl 67.1 79 0.0017 34.0 12.6 65 57-122 22-90 (265)
103 PRK01060 endonuclease IV; Prov 66.9 98 0.0021 33.1 13.4 83 61-166 14-99 (281)
104 PRK09997 hydroxypyruvate isome 66.8 86 0.0019 33.3 12.7 42 61-116 17-58 (258)
105 TIGR02631 xylA_Arthro xylose i 66.7 75 0.0016 36.3 12.9 91 57-166 30-125 (382)
106 PLN02361 alpha-amylase 66.4 18 0.0004 41.5 7.9 57 62-118 32-96 (401)
107 cd06598 GH31_transferase_CtsZ 66.1 13 0.00028 41.2 6.5 68 57-124 22-96 (317)
108 PF02055 Glyco_hydro_30: O-Gly 66.0 49 0.0011 39.2 11.5 277 42-345 74-424 (496)
109 COG5309 Exo-beta-1,3-glucanase 65.9 1.1E+02 0.0025 33.2 12.9 119 57-224 61-180 (305)
110 COG3589 Uncharacterized conser 65.8 12 0.00026 41.7 5.8 73 46-125 3-76 (360)
111 TIGR02401 trehalose_TreY malto 65.7 15 0.00032 45.9 7.3 65 56-120 13-87 (825)
112 PRK13209 L-xylulose 5-phosphat 65.2 45 0.00097 35.8 10.3 126 59-216 21-154 (283)
113 cd06603 GH31_GANC_GANAB_alpha 64.8 13 0.00027 41.7 6.1 74 51-125 13-91 (339)
114 PRK14511 maltooligosyl trehalo 64.5 16 0.00034 45.9 7.2 64 56-122 17-93 (879)
115 PF14307 Glyco_tran_WbsX: Glyc 64.4 73 0.0016 35.8 12.1 137 56-221 55-196 (345)
116 PRK14507 putative bifunctional 63.5 15 0.00033 49.1 7.2 62 56-120 755-829 (1693)
117 PLN00196 alpha-amylase; Provis 63.3 55 0.0012 38.0 11.1 57 62-118 47-112 (428)
118 PF08531 Bac_rhamnosid_N: Alph 62.1 37 0.00081 34.1 8.4 91 476-568 6-113 (172)
119 cd06600 GH31_MGAM-like This fa 61.5 16 0.00035 40.5 6.1 74 51-125 13-91 (317)
120 PRK13398 3-deoxy-7-phosphohept 60.8 52 0.0011 35.7 9.7 80 29-118 15-98 (266)
121 cd06599 GH31_glycosidase_Aec37 60.5 23 0.00049 39.3 7.1 67 58-124 28-99 (317)
122 PRK14510 putative bifunctional 57.7 17 0.00037 47.6 6.3 56 63-118 191-267 (1221)
123 cd04908 ACT_Bt0572_1 N-termina 57.7 31 0.00066 28.6 5.8 55 58-116 12-66 (66)
124 KOG2024 Beta-Glucuronidase GUS 57.5 16 0.00034 39.4 4.8 55 443-497 69-131 (297)
125 cd06604 GH31_glucosidase_II_Ma 57.1 23 0.00049 39.6 6.4 74 51-125 13-91 (339)
126 cd06595 GH31_xylosidase_XylS-l 56.5 26 0.00057 38.3 6.7 66 57-122 23-98 (292)
127 KOG0496 Beta-galactosidase [Ca 56.4 2.8 6E-05 50.1 -1.0 79 690-789 312-390 (649)
128 PF10566 Glyco_hydro_97: Glyco 56.4 42 0.00091 36.6 8.0 117 56-180 29-161 (273)
129 TIGR02100 glgX_debranch glycog 55.7 21 0.00045 43.9 6.3 55 64-118 189-265 (688)
130 PRK09875 putative hydrolase; P 55.3 66 0.0014 35.4 9.5 87 30-136 8-94 (292)
131 cd00544 CobU Adenosylcobinamid 54.8 20 0.00043 36.1 4.9 50 154-211 101-150 (169)
132 cd06601 GH31_lyase_GLase GLase 54.8 86 0.0019 35.1 10.5 118 51-189 13-136 (332)
133 smart00518 AP2Ec AP endonuclea 54.1 1.1E+02 0.0024 32.5 11.0 82 61-166 12-94 (273)
134 PF06832 BiPBP_C: Penicillin-B 53.7 22 0.00048 31.5 4.6 49 477-533 35-84 (89)
135 PF02449 Glyco_hydro_42: Beta- 53.7 32 0.00069 38.9 7.0 88 248-346 286-373 (374)
136 PF14683 CBM-like: Polysacchar 52.8 12 0.00027 37.6 3.1 53 622-675 91-153 (167)
137 PF03659 Glyco_hydro_71: Glyco 52.2 58 0.0013 37.3 8.7 54 57-119 15-68 (386)
138 TIGR02103 pullul_strch alpha-1 52.0 26 0.00057 44.3 6.3 21 98-118 404-424 (898)
139 PRK03705 glycogen debranching 51.1 28 0.0006 42.7 6.3 55 64-118 184-262 (658)
140 COG1306 Uncharacterized conser 50.9 39 0.00084 37.1 6.5 62 57-118 75-144 (400)
141 TIGR02102 pullulan_Gpos pullul 49.3 31 0.00068 44.6 6.5 21 98-118 555-575 (1111)
142 PF01055 Glyco_hydro_31: Glyco 49.2 37 0.00079 39.2 6.7 69 57-126 41-111 (441)
143 cd06565 GH20_GcnA-like Glycosy 47.1 1E+02 0.0022 34.0 9.4 58 57-118 15-80 (301)
144 TIGR02455 TreS_stutzeri trehal 47.1 49 0.0011 40.3 7.2 76 57-136 76-176 (688)
145 PF08308 PEGA: PEGA domain; I 46.6 21 0.00045 30.2 3.1 46 477-534 3-48 (71)
146 PF01791 DeoC: DeoC/LacD famil 46.6 6.7 0.00015 41.4 0.1 53 62-117 79-131 (236)
147 PLN02877 alpha-amylase/limit d 44.9 41 0.00089 42.8 6.5 21 98-118 466-486 (970)
148 PRK09856 fructoselysine 3-epim 44.9 31 0.00067 36.8 4.9 59 59-118 90-149 (275)
149 cd06597 GH31_transferase_CtsY 43.8 55 0.0012 36.7 6.8 74 51-124 13-111 (340)
150 PF14701 hDGE_amylase: glucano 43.4 1.4E+02 0.0029 34.8 9.8 98 50-153 11-127 (423)
151 PLN02784 alpha-amylase 41.4 62 0.0013 40.7 7.1 57 62-118 524-588 (894)
152 COG3572 GshA Gamma-glutamylcys 41.0 1.2E+02 0.0026 34.6 8.6 133 3-160 8-165 (456)
153 KOG1065 Maltase glucoamylase a 40.7 60 0.0013 40.3 6.8 64 59-127 311-380 (805)
154 PRK08673 3-deoxy-7-phosphohept 40.4 1.1E+02 0.0025 34.3 8.5 75 37-118 87-164 (335)
155 cd06594 GH31_glucosidase_YihQ 40.2 85 0.0018 34.8 7.5 69 57-125 21-98 (317)
156 COG1735 Php Predicted metal-de 39.7 1.4E+02 0.0029 33.2 8.6 152 29-222 17-172 (316)
157 PRK12677 xylose isomerase; Pro 39.6 2.9E+02 0.0062 31.7 11.8 91 58-166 30-124 (384)
158 COG0366 AmyA Glycosidases [Car 39.6 39 0.00085 39.1 5.0 57 62-118 32-97 (505)
159 cd00311 TIM Triosephosphate is 39.4 62 0.0013 34.7 6.0 49 65-119 77-125 (242)
160 PRK13210 putative L-xylulose 5 38.3 50 0.0011 35.3 5.3 60 59-119 94-154 (284)
161 cd06568 GH20_SpHex_like A subg 36.8 1.4E+02 0.003 33.4 8.5 62 57-118 16-95 (329)
162 PF13199 Glyco_hydro_66: Glyco 36.7 90 0.002 37.5 7.3 79 58-136 117-210 (559)
163 PRK00042 tpiA triosephosphate 35.8 68 0.0015 34.5 5.7 49 65-119 79-127 (250)
164 PRK10658 putative alpha-glucos 35.3 94 0.002 38.2 7.4 66 57-124 281-351 (665)
165 cd06564 GH20_DspB_LnbB-like Gl 34.9 1.4E+02 0.0031 33.1 8.2 63 56-118 14-102 (326)
166 PF02228 Gag_p19: Major core p 34.6 35 0.00076 30.0 2.6 40 56-112 19-58 (92)
167 PF01261 AP_endonuc_2: Xylose 34.5 43 0.00094 33.4 3.8 63 58-121 70-135 (213)
168 smart00481 POLIIIAc DNA polyme 34.3 1.3E+02 0.0028 24.9 6.1 45 59-116 15-59 (67)
169 PF14307 Glyco_tran_WbsX: Glyc 33.7 2.9E+02 0.0063 31.0 10.5 34 152-189 294-327 (345)
170 KOG3698 Hyaluronoglucosaminida 33.5 2E+02 0.0044 34.4 9.1 71 39-119 11-95 (891)
171 PRK09997 hydroxypyruvate isome 33.1 64 0.0014 34.2 5.0 61 59-119 85-145 (258)
172 PRK12331 oxaloacetate decarbox 33.1 94 0.002 36.4 6.6 55 52-118 89-143 (448)
173 PLN03059 beta-galactosidase; P 33.0 1.3E+02 0.0027 38.0 7.9 69 598-673 469-545 (840)
174 TIGR00677 fadh2_euk methylenet 32.5 1.1E+02 0.0025 33.3 6.8 109 45-167 130-251 (281)
175 KOG0470 1,4-alpha-glucan branc 32.2 49 0.0011 40.5 4.2 57 62-118 258-331 (757)
176 PF13380 CoA_binding_2: CoA bi 32.0 96 0.0021 29.1 5.4 44 56-115 63-106 (116)
177 KOG0622 Ornithine decarboxylas 31.9 73 0.0016 36.6 5.2 67 56-132 190-257 (448)
178 PLN02763 hydrolase, hydrolyzin 31.9 1.2E+02 0.0026 38.8 7.7 109 57-166 199-323 (978)
179 COG3623 SgaU Putative L-xylulo 30.9 58 0.0013 34.7 4.0 86 58-164 17-104 (287)
180 COG5520 O-Glycosyl hydrolase [ 30.2 1.6E+02 0.0035 33.3 7.4 84 107-211 111-204 (433)
181 cd01299 Met_dep_hydrolase_A Me 29.7 1.2E+02 0.0026 33.3 6.6 62 57-119 118-181 (342)
182 cd06418 GH25_BacA-like BacA is 29.7 1.9E+02 0.0042 30.2 7.7 90 57-168 50-140 (212)
183 PRK12858 tagatose 1,6-diphosph 29.6 66 0.0014 36.2 4.5 65 51-118 99-163 (340)
184 TIGR03234 OH-pyruv-isom hydrox 29.6 75 0.0016 33.5 4.8 60 59-118 84-143 (254)
185 cd02742 GH20_hexosaminidase Be 28.5 1.2E+02 0.0026 33.4 6.3 60 56-118 13-92 (303)
186 PRK05265 pyridoxine 5'-phospha 28.5 1E+02 0.0022 33.0 5.4 50 57-124 111-161 (239)
187 cd06545 GH18_3CO4_chitinase Th 28.4 2.7E+02 0.0059 29.5 8.8 74 89-188 36-110 (253)
188 PRK10426 alpha-glucosidase; Pr 28.3 1.3E+02 0.0028 36.8 7.0 66 59-124 221-295 (635)
189 PRK09267 flavodoxin FldA; Vali 28.2 3E+02 0.0065 27.1 8.6 74 39-115 44-117 (169)
190 PLN02561 triosephosphate isome 28.0 1.2E+02 0.0025 32.9 5.8 49 65-119 81-129 (253)
191 COG1523 PulA Type II secretory 27.8 98 0.0021 38.2 5.8 55 64-118 205-285 (697)
192 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.7 1.3E+02 0.0027 32.7 6.2 50 56-117 88-137 (275)
193 PRK15492 triosephosphate isome 27.7 1.2E+02 0.0026 32.9 5.9 49 65-119 87-135 (260)
194 cd06547 GH85_ENGase Endo-beta- 27.2 1E+02 0.0022 34.8 5.4 114 75-220 32-148 (339)
195 cd06570 GH20_chitobiase-like_1 27.1 2.6E+02 0.0056 31.1 8.5 63 56-118 15-88 (311)
196 PF07009 DUF1312: Protein of u 27.0 2.6E+02 0.0057 26.1 7.4 82 623-742 26-108 (113)
197 PTZ00372 endonuclease 4-like p 26.9 3.6E+02 0.0079 31.3 9.8 115 39-185 153-275 (413)
198 cd00003 PNPsynthase Pyridoxine 26.8 1.1E+02 0.0024 32.6 5.2 51 57-125 108-159 (234)
199 cd06562 GH20_HexA_HexB-like Be 26.7 3.2E+02 0.0068 30.8 9.3 62 56-117 15-89 (348)
200 PF07905 PucR: Purine cataboli 26.6 2.6E+02 0.0055 26.4 7.3 68 38-118 39-106 (123)
201 cd06563 GH20_chitobiase-like T 26.3 2.7E+02 0.0057 31.5 8.6 63 56-118 15-106 (357)
202 PF08924 DUF1906: Domain of un 26.1 1.4E+02 0.003 29.0 5.5 87 57-167 36-127 (136)
203 TIGR00419 tim triosephosphate 26.0 1.3E+02 0.0029 31.4 5.7 44 65-118 74-117 (205)
204 PRK14040 oxaloacetate decarbox 25.9 1.1E+02 0.0025 37.0 5.9 54 51-116 89-142 (593)
205 PTZ00333 triosephosphate isome 25.7 1.4E+02 0.003 32.3 6.0 49 65-119 82-130 (255)
206 TIGR00542 hxl6Piso_put hexulos 25.4 1.1E+02 0.0024 32.8 5.2 58 60-118 95-153 (279)
207 KOG0259 Tyrosine aminotransfer 24.8 86 0.0019 35.8 4.2 84 30-117 153-238 (447)
208 PF07691 PA14: PA14 domain; I 24.4 4E+02 0.0088 24.9 8.4 69 460-531 47-122 (145)
209 PLN02429 triosephosphate isome 24.2 1.4E+02 0.003 33.3 5.7 45 65-119 140-188 (315)
210 TIGR00587 nfo apurinic endonuc 24.2 3.5E+02 0.0075 29.1 8.8 84 61-166 13-98 (274)
211 COG1891 Uncharacterized protei 23.9 28 0.00061 35.3 0.2 65 44-116 116-185 (235)
212 PRK14565 triosephosphate isome 23.5 1.6E+02 0.0034 31.6 5.7 49 65-119 78-126 (237)
213 PRK08227 autoinducer 2 aldolas 23.4 73 0.0016 34.6 3.3 52 59-116 94-145 (264)
214 COG2884 FtsE Predicted ATPase 23.4 68 0.0015 33.5 2.8 18 622-639 53-70 (223)
215 PRK06703 flavodoxin; Provision 23.3 3E+02 0.0064 26.6 7.4 100 39-166 46-148 (151)
216 PRK14567 triosephosphate isome 23.3 1.6E+02 0.0035 31.8 5.8 49 65-119 78-126 (253)
217 TIGR00433 bioB biotin syntheta 23.3 1.2E+02 0.0027 32.7 5.1 52 62-116 123-176 (296)
218 PF04909 Amidohydro_2: Amidohy 22.9 2.5E+02 0.0055 29.1 7.3 55 58-119 83-138 (273)
219 PRK14566 triosephosphate isome 22.7 1.6E+02 0.0035 31.9 5.7 49 65-119 88-136 (260)
220 cd04882 ACT_Bt0572_2 C-termina 22.5 1.5E+02 0.0032 23.7 4.3 55 58-114 10-64 (65)
221 cd07944 DRE_TIM_HOA_like 4-hyd 22.4 1.7E+02 0.0037 31.7 5.9 66 54-119 15-81 (266)
222 TIGR01698 PUNP purine nucleoti 22.3 1.2E+02 0.0027 32.4 4.6 41 38-78 47-88 (237)
223 COG1809 (2R)-phospho-3-sulfola 21.8 1.3E+02 0.0028 32.0 4.4 64 46-119 77-140 (258)
224 TIGR00559 pdxJ pyridoxine 5'-p 21.4 1.6E+02 0.0036 31.4 5.3 51 57-125 108-159 (237)
225 cd06416 GH25_Lys1-like Lys-1 i 20.8 3.5E+02 0.0077 27.4 7.6 87 49-138 56-157 (196)
226 PF02126 PTE: Phosphotriestera 20.8 1E+02 0.0022 34.3 3.8 51 60-122 39-89 (308)
227 KOG0471 Alpha-amylase [Carbohy 20.8 1.6E+02 0.0034 35.4 5.7 63 62-124 43-114 (545)
228 PRK13209 L-xylulose 5-phosphat 20.5 1.4E+02 0.0031 31.8 4.9 59 60-119 100-159 (283)
229 PRK00870 haloalkane dehalogena 20.4 1.9E+02 0.004 31.1 5.8 66 41-112 46-114 (302)
230 PF00728 Glyco_hydro_20: Glyco 20.2 2.2E+02 0.0048 31.4 6.5 62 56-117 15-92 (351)
231 cd00019 AP2Ec AP endonuclease 20.1 99 0.0022 33.1 3.6 61 58-119 84-144 (279)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.1e-200 Score=1735.34 Aligned_cols=771 Identities=52% Similarity=0.966 Sum_probs=706.4
Q ss_pred CceEEEeCCeEEECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHH
Q 003612 27 GNNVTYDGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKE 106 (807)
Q Consensus 27 ~~~v~~~~~~f~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~ 106 (807)
...|++|+++|+|||+|++|+||+|||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++
T Consensus 27 ~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~l 106 (840)
T PLN03059 27 SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKV 106 (840)
T ss_pred eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccc
Q 003612 107 VQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENE 186 (807)
Q Consensus 107 a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENE 186 (807)
|+|+||+|||||||||||||++||+|.||+++|+|++|++|++|+++|++|+++|+++|++++|++++||||||+|||||
T Consensus 107 a~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENE 186 (840)
T PLN03059 107 VQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENE 186 (840)
T ss_pred HHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHhcCCccceEEecCCCCCccccccCCCCccCCCCCCCCCCCCCceeecccccccccc
Q 003612 187 YGMVEHSFLEKGPPYVRWAAKLAVDLQTGVPWVMCKQDDAPDPVINACNGRQCGETFAGPNSPDKPAIWTENWTSFYQVY 266 (807)
Q Consensus 187 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~P~~~~E~~~Gwf~~W 266 (807)
||++...|+.+|++||+||+++++++|++|||+||++.+++++++++|||.+| +.|. +.++.+|+||+|||+|||++|
T Consensus 187 YGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~-~~f~-~~~~~~P~m~tE~w~GWf~~w 264 (840)
T PLN03059 187 YGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYC-ENFK-PNKDYKPKMWTEAWTGWYTEF 264 (840)
T ss_pred ccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchh-hhcc-cCCCCCCcEEeccCchhHhhc
Confidence 99987667778999999999999999999999999998888899999999888 7887 666778999999999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHhcCCeeeeEEEeeccCCcCCCCCC-cccccccCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 003612 267 GDEARIRSAEDIAYHVALFIAKMKGSYVNYYMYHGGTNFGRTASA-YVLTGYYDQAPLDEYGLLRQPKWGHLKELHSAVK 345 (807)
Q Consensus 267 G~~~~~~~~~~~~~~~~~~l~~~g~s~~n~YM~hGGTNfG~~~g~-~~~TSYDy~Apl~E~G~~~t~Ky~~lr~l~~~~~ 345 (807)
|++++.|+++|+|.+++++|++ |+|.+||||||||||||||+|+ +++|||||||||+|+|++++|||.+||++|.+++
T Consensus 265 G~~~~~r~~~d~a~~~~~~l~~-g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~ 343 (840)
T PLN03059 265 GGAVPNRPAEDLAFSVARFIQN-GGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIK 343 (840)
T ss_pred CCCCCcCCHHHHHHHHHHHHHc-CCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHH
Confidence 9999999999999999999999 8887899999999999999998 5999999999999999985589999999999999
Q ss_pred hhcccccCCccccccCCCcceeeeeccCcccceeeeccCCCCceEEEeccceeccCCcccccccCCccccccccccc---
Q 003612 346 LCLKPMLSGVLVSMNFSKLQEAFIFQGSSECAAFLVNKDKRNNATVYFSNLMYELPPLSISILPDCKTVAFNTAKLD--- 422 (807)
Q Consensus 346 ~~~~~~~~~~p~~~~~~~~~~~~~y~~~~~~~~fl~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~t~~v~--- 422 (807)
.++++++..+|....+++.+++.+|...+.|++|+.|.+...+.+|+|+|++|.+|+|||+|||||+.++|+|+++.
T Consensus 344 ~~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~ 423 (840)
T PLN03059 344 LCEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQS 423 (840)
T ss_pred hcCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeecccccceeeecccccccc
Confidence 99888887888777899999999998744899999999988889999999999999999999999999999999971
Q ss_pred ------c---hhhhhhcccc-cccCccccccccchhhhccCCCCCCCcEEEEEEEeCCCCC------CcceeEeCCcceE
Q 003612 423 ------S---VEQWEEYKEA-IPTYDETSLRANFLLEQMNTTKDASDYLWYNFRFKHDPSD------SESVLKVSSLGHV 486 (807)
Q Consensus 423 ------~---~~~w~~~~e~-~~~~~~~~~~~p~~mEql~qt~d~~GYllY~t~i~~~~~~------~~~~L~i~~~~D~ 486 (807)
. .+.|+.+.|+ .+...+.++....++||++.|+|.+||+||+|+|.....+ .+++|+|..++|+
T Consensus 424 ~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~ 503 (840)
T PLN03059 424 SQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHA 503 (840)
T ss_pred ceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcE
Confidence 1 3579999998 4433444566677788889999999999999999765432 3467999999999
Q ss_pred EEEEECCEEEEEEecccCCcceEEEeeeeecCCccEEEEEEecCCcccccccccccccceeE-EEECCc-ccccccCCCc
Q 003612 487 LHAFINGEFVGSAHGKHSDKSFTLEKMVHLINGTNNVSLLSVMVGLPDSGAYLERRVAGLRN-VSIQGA-KELKDFSSFS 564 (807)
Q Consensus 487 a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvN~G~~~~~~~KGI~g-V~l~g~-~~~~~L~~~~ 564 (807)
++|||||+++|++.+......++++.+++++.|.|+|+||||||||+|||++|+++.|||+| |+|+|. ++..+|+++.
T Consensus 504 ~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~ 583 (840)
T PLN03059 504 LHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWK 583 (840)
T ss_pred EEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCc
Confidence 99999999999999877666788887788888999999999999999999999989999999 999985 5556899889
Q ss_pred ceEeccCccchhhccccCCCCccccccCCC-CCCCCceEEEEEEECCCCCCceEEeeCCCceEEEEEcCeeeeecccccc
Q 003612 565 WGYQVGLLGEKLQIFTDYGSRIVPWSRYGS-STHQPLTWYKTVFDAPTGSDPVAINLISMGKGEAWVNGQSIGRYWVSFL 643 (807)
Q Consensus 565 W~~~l~l~~e~~~~~~~~~~~~~~w~~~~~-~~~~~p~fYk~~F~~~~~~d~~fLd~~g~gKG~v~VNG~nlGRYW~~~~ 643 (807)
|.|+++|++|.++++..++...+.|...+. +...||+|||++|++|++.|||||||+|||||+|||||+||||||+...
T Consensus 584 W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a 663 (840)
T PLN03059 584 WSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYT 663 (840)
T ss_pred cccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCccccccccccc
Confidence 999999999998888875555788976543 3456799999999999999999999999999999999999999996411
Q ss_pred ----C---C-------------CCCCcceeeccCcccccccccEEEEEEecCCCCCeeEEEeecccccccccccCCCCcc
Q 003612 644 ----T---P-------------QGTPSQSWYHIPRSFLKPTGNLLVLLEEENGYPPGISIDTVSVTTLCGHVSDSHLPPV 703 (807)
Q Consensus 644 ----~---~-------------~gGPQqtlYhVP~~~Lk~g~N~IvIfE~~~~~~~~i~~~~~~~~~~c~~~~e~~~~~~ 703 (807)
| + =|||||+|||||++|||+|+|+||||||++++|..|+++++.++++|++++|+|| +|
T Consensus 664 ~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~p-~~ 742 (840)
T PLN03059 664 AHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQP-AL 742 (840)
T ss_pred ccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccCC-cc
Confidence 1 0 1799999999999999999999999999999999999999999999999999995 69
Q ss_pred cccccccccccccccccCCCCCceeeecCCCCeEeEEeeeecCCCCCCCCCCCcCcccCCChHHHHHHHhCCCceeEEee
Q 003612 704 ISWRSQNQRTLKTHKRIPGRRPKVQIRCPSGRKISKILFASYGNPNGNCENYAIGSCHSSNSRAIVEKACLGKRSCTVPV 783 (807)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~L~Cp~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~i~a 783 (807)
++|++.... .++.....++|+||.|++|++|.+|+|||+.++|+++++++|++++++++|+++|+||++|+|.|
T Consensus 743 ~~w~~~~~~------~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~a 816 (840)
T PLN03059 743 KNWQIIASG------KVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTV 816 (840)
T ss_pred ccccccccc------cccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEe
Confidence 999994432 24467788999999999997799999999889999999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCcEEEEEEEeC
Q 003612 784 WTEKFYGDPCPGIPKALLVDAQCT 807 (807)
Q Consensus 784 ~~~~Fg~DPCpgt~KYL~V~Y~C~ 807 (807)
++.+||+||||||+|||+|+|.|+
T Consensus 817 sn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 817 APEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred ccceecCCCCCCceeEEEEEEEeC
Confidence 999997799999999999999995
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-150 Score=1265.64 Aligned_cols=630 Identities=55% Similarity=0.991 Sum_probs=581.6
Q ss_pred CceEEEeCCeEEECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHH
Q 003612 27 GNNVTYDGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKE 106 (807)
Q Consensus 27 ~~~v~~~~~~f~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~ 106 (807)
+..|++|+++|++||+|++++||++||||++|++|+|+++|||++|+|+|+||||||.|||+||+|||+|+.||.+||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccc
Q 003612 107 VQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENE 186 (807)
Q Consensus 107 a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENE 186 (807)
|++.||+|+||+||||||||++||+|.||+..|++.+||+|++|+.+|++|+++|+++|+ +|++++||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHhcCCccceEEecCCCCCccccccCCCCccCCCCCCCCCCCCCceeecccccccccc
Q 003612 187 YGMVEHSFLEKGPPYVRWAAKLAVDLQTGVPWVMCKQDDAPDPVINACNGRQCGETFAGPNSPDKPAIWTENWTSFYQVY 266 (807)
Q Consensus 187 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~P~~~~E~~~Gwf~~W 266 (807)
||.+...|++.++.|++|-+.++...+.+|||+||.+.++|+.++++|||++|.+.|..+++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99988888888999999999999999999999999999999999999999999999987899999999999999999999
Q ss_pred CCCcccCCHHHHHHHHHHHHHhcCCeeeeEEEeeccCCcCCCCCCcccccccCCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 003612 267 GDEARIRSAEDIAYHVALFIAKMKGSYVNYYMYHGGTNFGRTASAYVLTGYYDQAPLDEYGLLRQPKWGHLKELHSAVKL 346 (807)
Q Consensus 267 G~~~~~~~~~~~~~~~~~~l~~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDy~Apl~E~G~~~t~Ky~~lr~l~~~~~~ 346 (807)
|++++.|++++++..+++|+++ |++++||||||||||||++||.+.+|||||||||+ |.+++|||.|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~-ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSK-GGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhc-CccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999 98999999999999999999999999999999999 89999999999999999999
Q ss_pred hcccccCCccccccCCCcceeeeeccCcccceeeeccCCCCceEEEeccceeccCCcccccccCCcccccccccccchhh
Q 003612 347 CLKPMLSGVLVSMNFSKLQEAFIFQGSSECAAFLVNKDKRNNATVYFSNLMYELPPLSISILPDCKTVAFNTAKLDSVEQ 426 (807)
Q Consensus 347 ~~~~~~~~~p~~~~~~~~~~~~~y~~~~~~~~fl~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~t~~v~~~~~ 426 (807)
+++.+..+++....+++. ...|.+|+.|.+....+.+.|++..+.+|.++++|+++|++++|+|+++...
T Consensus 332 ~ep~lv~gd~~~~kyg~~--------~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNL--------REACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred cCccccccCcccccccch--------hhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 998887777554444333 3459999999998888999999999999999999999999999999997532
Q ss_pred hhhcccccccCccccccccchhhhccCCCCCCCcEEEEEEEeCCCCCCcceeEeC-CcceEEEEEECCEEEEEEecccCC
Q 003612 427 WEEYKEAIPTYDETSLRANFLLEQMNTTKDASDYLWYNFRFKHDPSDSESVLKVS-SLGHVLHAFINGEFVGSAHGKHSD 505 (807)
Q Consensus 427 w~~~~e~~~~~~~~~~~~p~~mEql~qt~d~~GYllY~t~i~~~~~~~~~~L~i~-~~~D~a~Vfvng~~vG~~~~~~~~ 505 (807)
|....| |.++|..+| .+||++|+|.++.+.++ ...|+|. +++|++||||||+++|++.++...
T Consensus 402 ~~~~~e------------~~~~~~~~~---~~~~ll~~~~~t~d~sd-~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~ 465 (649)
T KOG0496|consen 402 WISFTE------------PIPSEAVGQ---SFGGLLEQTNLTKDKSD-TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEK 465 (649)
T ss_pred cccccC------------CCccccccC---cceEEEEEEeeccccCC-CceEeecccccceEEEEECCEEeeeEeccccc
Confidence 443433 445788866 68999999999865543 5668888 999999999999999999987666
Q ss_pred cceEEEeeeeecCCccEEEEEEecCCcccccccccccccceeE-EEECCcccccccCCCcceEeccCccchhhccccCCC
Q 003612 506 KSFTLEKMVHLINGTNNVSLLSVMVGLPDSGAYLERRVAGLRN-VSIQGAKELKDFSSFSWGYQVGLLGEKLQIFTDYGS 584 (807)
Q Consensus 506 ~~~~~~~~~~l~~g~~~L~ILvEn~GrvN~G~~~~~~~KGI~g-V~l~g~~~~~~L~~~~W~~~l~l~~e~~~~~~~~~~ 584 (807)
..+.+..++.|..|.|+|+|||||+||+||| +++.+.|||+| |+|+|. ++++|+.|.|+++|.+|...++++.+.
T Consensus 466 ~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~---~~l~~~~w~~~~gl~ge~~~~~~~~~~ 541 (649)
T KOG0496|consen 466 IKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL---IDLTWTKWPYKVGLKGEKLGLHTEEGS 541 (649)
T ss_pred eeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee---eccceeecceecccccchhhccccccc
Confidence 6677777888899999999999999999999 78889999999 999998 578888899999999999999998887
Q ss_pred CccccccCCC-CCCCCceEEEEEEECCCCCCceEEeeCCCceEEEEEcCeeeeeccccccCCCCCCcceeeccCcccccc
Q 003612 585 RIVPWSRYGS-STHQPLTWYKTVFDAPTGSDPVAINLISMGKGEAWVNGQSIGRYWVSFLTPQGTPSQSWYHIPRSFLKP 663 (807)
Q Consensus 585 ~~~~w~~~~~-~~~~~p~fYk~~F~~~~~~d~~fLd~~g~gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~ 663 (807)
..++|..... +...|.+||+ +|++|++.+||||||.|||||+|||||+|||||||++ |||++|| ||++|||+
T Consensus 542 ~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~-----G~Q~~yh-vPr~~Lk~ 614 (649)
T KOG0496|consen 542 SKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF-----GPQRTYH-VPRSWLKP 614 (649)
T ss_pred cccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC-----CCceEEE-CcHHHhCc
Confidence 8889987654 3345778888 9999999999999999999999999999999999999 9977777 99999999
Q ss_pred cccEEEEEEecCCCCCeeEEEeecccccccccccC
Q 003612 664 TGNLLVLLEEENGYPPGISIDTVSVTTLCGHVSDS 698 (807)
Q Consensus 664 g~N~IvIfE~~~~~~~~i~~~~~~~~~~c~~~~e~ 698 (807)
+.|+||||||++++|..|+|+++....+|..++|+
T Consensus 615 ~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~~ 649 (649)
T KOG0496|consen 615 SGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVREH 649 (649)
T ss_pred CCceEEEEEeccCCCccceEEEeEeeeEeeecccC
Confidence 99999999999999999999998888999999874
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2e-86 Score=723.05 Aligned_cols=298 Identities=40% Similarity=0.720 Sum_probs=229.9
Q ss_pred eEEECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEE
Q 003612 36 SLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVC 115 (807)
Q Consensus 36 ~f~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 115 (807)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|||||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccC
Q 003612 116 LRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFL 195 (807)
Q Consensus 116 lr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~ 195 (807)
|||||||||||++||+|.||.+++++++|++|+.|+++|++|+++|+++|+ ++++++||||||+|||||||. +
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~----~- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGS----Y- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGC----T-
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCC----C-
Confidence 999999999999999999999998999999999999999999999999999 589999999999999999995 2
Q ss_pred CCChHHHHHHHHHHHhcCCc-cceEEecCCC--------CCccccccCCCCccCCC----CC--CCCCCCCCceeecccc
Q 003612 196 EKGPPYVRWAAKLAVDLQTG-VPWVMCKQDD--------APDPVINACNGRQCGET----FA--GPNSPDKPAIWTENWT 260 (807)
Q Consensus 196 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~ng~~~~~~----~~--~~~~~~~P~~~~E~~~ 260 (807)
.++++||+.|++++++.+++ +++++++... .++..+.+++++.|.+. |. ...+|++|.|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999988 6677776432 22222334444555332 10 1345889999999999
Q ss_pred ccccccCCCcccCCHHHHHHHHHHHHHhcCCeeeeEEEeeccCCcCCCCCCcc-----cccccCCCCCCCCCCCCCchHH
Q 003612 261 SFYQVYGDEARIRSAEDIAYHVALFIAKMKGSYVNYYMYHGGTNFGRTASAYV-----LTGYYDQAPLDEYGLLRQPKWG 335 (807)
Q Consensus 261 Gwf~~WG~~~~~~~~~~~~~~~~~~l~~~g~s~~n~YM~hGGTNfG~~~g~~~-----~TSYDy~Apl~E~G~~~t~Ky~ 335 (807)
|||++||++++.+++++++..++++|++ | +++||||||||||||+++|+.. +|||||+|||+|+|++ ||||.
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~-g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~ 310 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSK-G-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYY 310 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHH-C-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHh-h-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHH
Confidence 9999999999999999999999999999 5 7899999999999999999844 4999999999999998 79999
Q ss_pred HHHHHHHH
Q 003612 336 HLKELHSA 343 (807)
Q Consensus 336 ~lr~l~~~ 343 (807)
+||+||.+
T Consensus 311 ~lr~l~~~ 318 (319)
T PF01301_consen 311 ELRRLHQK 318 (319)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=369.49 Aligned_cols=293 Identities=24% Similarity=0.302 Sum_probs=211.3
Q ss_pred EEEeCCeEEECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEE-cccCCcCCCCCCeeeccCchhHHHHHHHHH
Q 003612 30 VTYDGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQT-LVFWNLHEPQPGQFDFSGRRDLVRFIKEVQ 108 (807)
Q Consensus 30 v~~~~~~f~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~ 108 (807)
|.+++..+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |++||.|||++|+|||+ .+|.. |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 68888 999999
Q ss_pred HcCcEEEEeeCC-cccccccCCCCCcccccCCCccccCCCh-----hhHHHHHHHHHHHHHHHHhcccccccCCceEecc
Q 003612 109 AQGLYVCLRIGP-FIEGEWGYGGLPFWLHDVPGIVFRSDNE-----PFKFHMKRYATMIVNMMKAARLYASQGGPIILSQ 182 (807)
Q Consensus 109 ~~GL~Vilr~GP-yicaEw~~GG~P~Wl~~~p~~~~R~~d~-----~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~Q 182 (807)
+.||+||||||| ..|.+|..+++|+||..++....|.... +--...+.+.++|+++|+++ .+++|++||+||
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer--~~~~~~~v~~w~ 156 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRER--LYGNGPAVITWQ 156 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHH--HhccCCceeEEE
Confidence 999999999999 9999999999999998776643443211 11123445555688888864 379999999999
Q ss_pred ccccccccccccCCCChHHHHHHHHHHHhc-CCccceEEecCC-CCC-ccccccCCCC-----ccC-CCCCCCCCCCC--
Q 003612 183 IENEYGMVEHSFLEKGPPYVRWAAKLAVDL-QTGVPWVMCKQD-DAP-DPVINACNGR-----QCG-ETFAGPNSPDK-- 251 (807)
Q Consensus 183 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~-~~~~~~~ng~-----~~~-~~~~~~~~~~~-- 251 (807)
++||||++.+....|.+.+..||++.+-.. .++-+|=+..-+ +.. ...|.+-+.+ ... -++. .....+
T Consensus 157 ~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~-~f~~e~~~ 235 (673)
T COG1874 157 NDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYR-RFESEQIL 235 (673)
T ss_pred ccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHh-hhhhhhhH
Confidence 999999953323347888989999876322 123333222100 000 0011111100 000 0111 111222
Q ss_pred --Cceeeccccccc-cccCCCcccCC-HHHHHHHHHHHHHhcCCeeeeEEEeeccCCcC------CCCCC----------
Q 003612 252 --PAIWTENWTSFY-QVYGDEARIRS-AEDIAYHVALFIAKMKGSYVNYYMYHGGTNFG------RTASA---------- 311 (807)
Q Consensus 252 --P~~~~E~~~Gwf-~~WG~~~~~~~-~~~~~~~~~~~l~~~g~s~~n~YM~hGGTNfG------~~~g~---------- 311 (807)
+....|.+-+|| +.|..+.--.. .+.-+..+++.|.. ++.-||||+|+|++|+ +++++
T Consensus 236 ~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~--~swdny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~ 313 (673)
T COG1874 236 EFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDF--ASWDNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQ 313 (673)
T ss_pred HHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcCh--hhhhhhhhhccccchhhhhHHHHHhhccCCceeeccC
Confidence 556667777888 77766543333 33345566677777 4457999999999999 66665
Q ss_pred -cccccccCCCCCCCCCCC
Q 003612 312 -YVLTGYYDQAPLDEYGLL 329 (807)
Q Consensus 312 -~~~TSYDy~Apl~E~G~~ 329 (807)
...|+|++.+.+.+.|.+
T Consensus 314 ~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 314 LPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred CcchhhhhhccCCCCCccc
Confidence 257999999999999984
No 5
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.81 E-value=2.4e-20 Score=163.70 Aligned_cols=76 Identities=38% Similarity=0.755 Sum_probs=61.8
Q ss_pred eecCCCCeEeEEeeeecCC-CCCCCCCC---CcCcccCCChHHHHHHHhCCCceeEEeecCCCccCCCCCCCCcEEEEEE
Q 003612 729 IRCPSGRKISKILFASYGN-PNGNCENY---AIGSCHSSNSRAIVEKACLGKRSCTVPVWTEKFYGDPCPGIPKALLVDA 804 (807)
Q Consensus 729 L~Cp~g~~I~~I~~A~YGr-~~~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~i~a~~~~Fg~DPCpgt~KYL~V~Y 804 (807)
|+||+|++| +|.+|+||| +..+|+.. .+.+|.+++++.+|+++|+||++|.|.|++.+|| ||||++.|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 799999999 699999999 65699842 4568999999999999999999999999999997 99999999999999
Q ss_pred Ee
Q 003612 805 QC 806 (807)
Q Consensus 805 ~C 806 (807)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 6
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.80 E-value=4.4e-20 Score=189.53 Aligned_cols=86 Identities=33% Similarity=0.611 Sum_probs=80.8
Q ss_pred CCCCCceeeecCCCCeEeEEeeeecCC-CCCCCCCC----CcCcccCCChHHHHHHHhCCCceeEEeecCCCccCCCCCC
Q 003612 721 PGRRPKVQIRCPSGRKISKILFASYGN-PNGNCENY----AIGSCHSSNSRAIVEKACLGKRSCTVPVWTEKFYGDPCPG 795 (807)
Q Consensus 721 ~~~~~~~~L~Cp~g~~I~~I~~A~YGr-~~~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~i~a~~~~Fg~DPCpg 795 (807)
.|||+.++|+||.+.+|+ |++|+||| +..+|.+. .+.+|..+++++++.++|+++++|.|.|+..+|+.|||||
T Consensus 40 aCdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPg 118 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPG 118 (265)
T ss_pred eecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCC
Confidence 599999999999999996 99999999 66799852 3689999999999999999999999999999999999999
Q ss_pred CCcEEEEEEEeC
Q 003612 796 IPKALLVDAQCT 807 (807)
Q Consensus 796 t~KYL~V~Y~C~ 807 (807)
|+|||+|.|.|+
T Consensus 119 T~KYLev~Y~Cv 130 (265)
T KOG4729|consen 119 TSKYLEVQYGCV 130 (265)
T ss_pred chhheEEEeccC
Confidence 999999999995
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.75 E-value=1.3e-18 Score=194.74 Aligned_cols=144 Identities=24% Similarity=0.386 Sum_probs=100.8
Q ss_pred CCC-CChhcHHHHHHHHHHcCCCEEEE-cccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCC
Q 003612 53 YPR-STPQMWPRLIAKAKEGGLDVVQT-LVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGG 130 (807)
Q Consensus 53 y~r-~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG 130 (807)
||. .|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+. ||++|++|+++||+|||+.+ .+.
T Consensus 3 ~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~---lD~~l~~a~~~Gi~viL~~~--------~~~ 71 (374)
T PF02449_consen 3 YPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSW---LDRVLDLAAKHGIKVILGTP--------TAA 71 (374)
T ss_dssp -GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HH---HHHHHHHHHCTT-EEEEEEC--------TTT
T ss_pred CcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHH---HHHHHHHHHhccCeEEEEec--------ccc
Confidence 454 58899999999999999999996 667999999999999999 99999999999999999886 467
Q ss_pred CCcccc-cCCCccccCC------------ChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCC-
Q 003612 131 LPFWLH-DVPGIVFRSD------------NEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLE- 196 (807)
Q Consensus 131 ~P~Wl~-~~p~~~~R~~------------d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~~- 196 (807)
.|.||. ++|++..... .....+.++++++++++.|+++ |++++.||+|||+||++.. .+|++
T Consensus 72 ~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~---y~~~p~vi~~~i~NE~~~~-~~~~~~ 147 (374)
T PF02449_consen 72 PPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER---YGDHPAVIGWQIDNEPGYH-RCYSPA 147 (374)
T ss_dssp S-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH---HTTTTTEEEEEECCSTTCT-S--SHH
T ss_pred cccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh---ccccceEEEEEeccccCcC-cCCChH
Confidence 899995 5676532111 1112233444444555555543 4678999999999999874 33543
Q ss_pred CChHHHHHHHHHHHh
Q 003612 197 KGPPYVRWAAKLAVD 211 (807)
Q Consensus 197 ~~~~y~~~l~~~~~~ 211 (807)
+.++|.+||++++..
T Consensus 148 ~~~~f~~wLk~kY~t 162 (374)
T PF02449_consen 148 CQAAFRQWLKEKYGT 162 (374)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCC
Confidence 567899999999854
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.46 E-value=2.6e-12 Score=139.77 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=108.6
Q ss_pred EEEeCCeEEECCEEEEEEEEEeeCCC------CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHH
Q 003612 30 VTYDGRSLIINGHRKILFSGSIHYPR------STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRF 103 (807)
Q Consensus 30 v~~~~~~f~ldG~~~~~~~g~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~f 103 (807)
|++.++.|+|||||+++.|...|... ++++.|+.+|++||++|+|+||+. |.|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~-----h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTH-----HYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEET-----TS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcc-----cccCc-----------HHH
Confidence 68899999999999999999988643 488999999999999999999994 77763 899
Q ss_pred HHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccc
Q 003612 104 IKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQI 183 (807)
Q Consensus 104 l~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~Qi 183 (807)
+++|.++||.|+..+. . .+.-.|-... .......++.|.+.+.+-+++++.+. .|++.||||-+
T Consensus 65 ~~~cD~~GilV~~e~~-~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~-------~NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIP-L-------EGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRD-------RNHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S---------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHH-------TT-TTEEEEEE
T ss_pred HHHHhhcCCEEEEecc-c-------cccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcC-------cCcCchheeec
Confidence 9999999999998763 1 1111222111 11245678888887776666665553 58999999999
Q ss_pred cccccccccccCCCChHHHHHHHHHHHhcCCccceEEecC
Q 003612 184 ENEYGMVEHSFLEKGPPYVRWAAKLAVDLQTGVPWVMCKQ 223 (807)
Q Consensus 184 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 223 (807)
.||.. ...+++.|.+++++.+-+-|+.....
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeeccc
Confidence 99993 24688899999999988877654443
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.31 E-value=3.9e-10 Score=134.28 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=111.5
Q ss_pred ceEEEeCCeEEECCEEEEEEEEEeeCCC------CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHH
Q 003612 28 NNVTYDGRSLIINGHRKILFSGSIHYPR------STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLV 101 (807)
Q Consensus 28 ~~v~~~~~~f~ldG~~~~~~~g~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 101 (807)
.+|++++..|+|||+|+++.|.+.|... ++++.|+.+|+.||++|+|+||+. |-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s-----h~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS-----HYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec-----cCCCC-----------H
Confidence 4688899999999999999999888432 578899999999999999999994 66752 7
Q ss_pred HHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc-------c-CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccc
Q 003612 102 RFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH-------D-VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYAS 173 (807)
Q Consensus 102 ~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~-------~-~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~ 173 (807)
+|+++|.|+||+|+....= -|+..|.. + .+.......+|.+.++.++- +...|++ +.
T Consensus 340 ~~~~~cD~~GllV~~E~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~mv~r----~~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETPA--------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA---IRELIAR----DK 404 (604)
T ss_pred HHHHHHHhcCcEEEEeccc--------ccccccccccccccccccccccccccchhHHHHHHHH---HHHHHHh----cc
Confidence 9999999999999987641 11222221 0 11100112234454443333 3334432 57
Q ss_pred cCCceEeccccccccccccccCCCChHHHHHHHHHHHhcCCccceEEe
Q 003612 174 QGGPIILSQIENEYGMVEHSFLEKGPPYVRWAAKLAVDLQTGVPWVMC 221 (807)
Q Consensus 174 ~ggpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 221 (807)
|++.||||-+.||.... ......+++.|.+.+++.+-+-|....
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 99999999999997542 113457888889999998877776544
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.09 E-value=1.6e-09 Score=135.42 Aligned_cols=150 Identities=19% Similarity=0.146 Sum_probs=108.0
Q ss_pred ceEEEeCCeEEECCEEEEEEEEEeeCCC------CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHH
Q 003612 28 NNVTYDGRSLIINGHRKILFSGSIHYPR------STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLV 101 (807)
Q Consensus 28 ~~v~~~~~~f~ldG~~~~~~~g~~hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 101 (807)
.+|+++++.|+|||+|+++.|...|-.. ++++.|+.+|+.||++|+|+||+. |-|.. .
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-----------~ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA-----HYPND-----------P 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------H
Confidence 3678888999999999999999887332 478999999999999999999994 66662 7
Q ss_pred HHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEec
Q 003612 102 RFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILS 181 (807)
Q Consensus 102 ~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~ 181 (807)
+|+++|.|+||+|+-.. |..|. |++ .. .+...-+++|.|.+++ .+++...|++ ++||+.||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~-----g~~--~~--~~~~~~~~~p~~~~~~---~~~~~~mV~R----drNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESH-----GFA--NV--GDISRITDDPQWEKVY---VDRIVRHIHA----QKNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-ccccc-----Ccc--cc--cccccccCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEE
Confidence 99999999999999875 22222 221 00 0111224667676543 3344445543 4799999999
Q ss_pred cccccccccccccCCCChHHHHHHHHHHHhcCCccceE
Q 003612 182 QIENEYGMVEHSFLEKGPPYVRWAAKLAVDLQTGVPWV 219 (807)
Q Consensus 182 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~ 219 (807)
-+.||-+. | . .++.+.+.+++.+-+-|+.
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~ 473 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH 473 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE
Confidence 99999863 2 2 2367778888888776643
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.08 E-value=2.2e-09 Score=133.88 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=108.1
Q ss_pred ceEEEeCCeEEECCEEEEEEEEEeeCC------CCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHH
Q 003612 28 NNVTYDGRSLIINGHRKILFSGSIHYP------RSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLV 101 (807)
Q Consensus 28 ~~v~~~~~~f~ldG~~~~~~~g~~hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 101 (807)
.+|++++..|+|||+|+++.|...|-. +++++.|+++|+.||++|+|+||+. |-|.. .
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-----------p 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCS-----HYPNH-----------P 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEec-----CCCCC-----------H
Confidence 367788899999999999999988832 2589999999999999999999994 66652 7
Q ss_pred HHHHHHHHcCcEEEEeeCCcccccccCCCC-CcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEe
Q 003612 102 RFIKEVQAQGLYVCLRIGPFIEGEWGYGGL-PFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIIL 180 (807)
Q Consensus 102 ~fl~~a~~~GL~Vilr~GPyicaEw~~GG~-P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~ 180 (807)
+|+++|.|+||+|+-... . | ..|+ |. . .-.+||.|.+++ .+++...|++ ++||+.|||
T Consensus 398 ~fydlcDe~GilV~dE~~-~---e--~hg~~~~---~-----~~~~dp~~~~~~---~~~~~~mV~R----drNHPSIi~ 456 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEAN-I---E--THGMVPM---N-----RLSDDPRWLPAM---SERVTRMVQR----DRNHPSIII 456 (1027)
T ss_pred HHHHHHHHcCCEEEEecC-c---c--ccCCccc---c-----CCCCCHHHHHHH---HHHHHHHHHh----CCCCCEEEE
Confidence 999999999999998763 1 1 1111 11 0 013567776654 4455555543 479999999
Q ss_pred ccccccccccccccCCCChHHHHHHHHHHHhcCCccceEEe
Q 003612 181 SQIENEYGMVEHSFLEKGPPYVRWAAKLAVDLQTGVPWVMC 221 (807)
Q Consensus 181 ~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 221 (807)
|-+.||-+. + ...+.+.+.+++.+-+-|....
T Consensus 457 WSlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 457 WSLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred EeCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 999999763 2 1245667777777777675543
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.04 E-value=3.1e-09 Score=113.17 Aligned_cols=160 Identities=18% Similarity=0.208 Sum_probs=109.4
Q ss_pred CCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCC-CCCCe-eeccCchhHHHHHHHHHHcCcEEEEe
Q 003612 40 NGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHE-PQPGQ-FDFSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 40 dG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-p~~G~-~df~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
+|+++.+.|-+.|.. .+..-++.+++||++|+|+||+.+.|...+ |.|+. ++=+....|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~--~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWY--NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTS--GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccC--CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 789999999999932 122789999999999999999999995544 77764 77666678999999999999999986
Q ss_pred eCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccc--cC
Q 003612 118 IGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHS--FL 195 (807)
Q Consensus 118 ~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~--~~ 195 (807)
+= ..|.|...... -.......++++.+...|+++ +++..+|++++|-||....... +.
T Consensus 82 ~h----------~~~~w~~~~~~-------~~~~~~~~~~~~~~~~~la~~---y~~~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----------NAPGWANGGDG-------YGNNDTAQAWFKSFWRALAKR---YKDNPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----------ESTTCSSSTST-------TTTHHHHHHHHHHHHHHHHHH---HTTTTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----------cCccccccccc-------cccchhhHHHHHhhhhhhccc---cCCCCcEEEEEecCCccccCCccccc
Confidence 63 22777432111 112223445555555555543 4466789999999999864211 00
Q ss_pred -CCC---hHHHHHHHHHHHhcCCccceEEe
Q 003612 196 -EKG---PPYVRWAAKLAVDLQTGVPWVMC 221 (807)
Q Consensus 196 -~~~---~~y~~~l~~~~~~~g~~vp~~~~ 221 (807)
... .++++.+.+..|+.+.+.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 001 34556666677888877666553
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.02 E-value=4.9e-10 Score=104.71 Aligned_cols=69 Identities=29% Similarity=0.655 Sum_probs=52.1
Q ss_pred CCCceEEEEEEECCCCCCceE-Eee--CCCceEEEEEcCeeeeeccccccCCCCCCcceeeccCcccccccccEEEEE
Q 003612 597 HQPLTWYKTVFDAPTGSDPVA-INL--ISMGKGEAWVNGQSIGRYWVSFLTPQGTPSQSWYHIPRSFLKPTGNLLVLL 671 (807)
Q Consensus 597 ~~~p~fYk~~F~~~~~~d~~f-Ld~--~g~gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~g~N~IvIf 671 (807)
..+..|||++|+....+..+. |+. ....+++|||||++|||||+.+ |||++++ ||..+|+.++|.|+|+
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-----g~q~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-----GPQTTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-----ECCEEEE-E-BTTBTTCEEEEEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-----CccEEEE-eCceeecCCCEEEEEE
Confidence 447899999997432211223 333 4588999999999999999888 9999999 9999999876665554
No 14
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=6.2e-09 Score=125.81 Aligned_cols=120 Identities=23% Similarity=0.253 Sum_probs=96.8
Q ss_pred ceEEEeCCeEEECCEEEEEEEEEeeCCC-----C-ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHH
Q 003612 28 NNVTYDGRSLIINGHRKILFSGSIHYPR-----S-TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLV 101 (807)
Q Consensus 28 ~~v~~~~~~f~ldG~~~~~~~g~~hy~r-----~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 101 (807)
.+|++++..|.|||||+++-|..-|.+- . ..+...++|++||++|+|+|||. |-|.. +
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-----------H
Confidence 4789999999999999999999988653 2 55669999999999999999997 88884 8
Q ss_pred HHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEec
Q 003612 102 RFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILS 181 (807)
Q Consensus 102 ~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~ 181 (807)
.|+++|.++||+||-.+- .+|. |.| +|+.|.+.+..=+++++.+. +|++.||||
T Consensus 348 ~~ydLcDelGllV~~Ea~----~~~~--~~~-------------~~~~~~k~~~~~i~~mver~-------knHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEAM----IETH--GMP-------------DDPEWRKEVSEEVRRMVERD-------RNHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEecc----hhhc--CCC-------------CCcchhHHHHHHHHHHHHhc-------cCCCcEEEE
Confidence 999999999999998763 2322 222 67778777665444444443 689999999
Q ss_pred cccccccc
Q 003612 182 QIENEYGM 189 (807)
Q Consensus 182 QiENEyg~ 189 (807)
-+.||.|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999884
No 15
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.40 E-value=1.1e-06 Score=82.31 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=56.8
Q ss_pred hhhccCCCCCCCcEEEEEEEeCCCCCCcce-eEeC-CcceEEEEEECCEEEEEEec-ccCCcceEEEeeeeecCCccEEE
Q 003612 448 LEQMNTTKDASDYLWYNFRFKHDPSDSESV-LKVS-SLGHVLHAFINGEFVGSAHG-KHSDKSFTLEKMVHLINGTNNVS 524 (807)
Q Consensus 448 mEql~qt~d~~GYllY~t~i~~~~~~~~~~-L~i~-~~~D~a~Vfvng~~vG~~~~-~~~~~~~~~~~~~~l~~g~~~L~ 524 (807)
.+..+..+++.|++|||++|...+.+..-. |.+. +.+.+++|||||.++|.... ...+..+.++..+ |+.++++|.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~i-l~~~n~v~~ 102 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGI-LKYGNNVLV 102 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTT-BTTCEEEEE
T ss_pred eeccCccccCCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCcee-ecCCCEEEE
Confidence 445555567899999999997543222223 4443 68999999999999999873 2233334444322 556677899
Q ss_pred EEEecCCc
Q 003612 525 LLSVMVGL 532 (807)
Q Consensus 525 ILvEn~Gr 532 (807)
+|+.+||+
T Consensus 103 vl~~~~g~ 110 (111)
T PF13364_consen 103 VLWDNMGH 110 (111)
T ss_dssp EEEE-STT
T ss_pred EEEeCCCC
Confidence 99999996
No 16
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.24 E-value=1.1e-05 Score=87.10 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=84.2
Q ss_pred ceEEEeCCeEE--ECCEEEEEEEEEeeCCC-----------CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeec
Q 003612 28 NNVTYDGRSLI--INGHRKILFSGSIHYPR-----------STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDF 94 (807)
Q Consensus 28 ~~v~~~~~~f~--ldG~~~~~~~g~~hy~r-----------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df 94 (807)
..|++.++.|. .+|++|+|.|....+.. .+++.|++++..||++|+||||+| ...|.
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY----~vdp~------ 78 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY----SVDPS------ 78 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE----EeCCC------
Confidence 45888999999 79999999977443221 256889999999999999999998 33343
Q ss_pred cCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCCh--hhHHH-HHHHHHHHHHHHHhcccc
Q 003612 95 SGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNE--PFKFH-MKRYATMIVNMMKAARLY 171 (807)
Q Consensus 95 ~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~--~~~~~-~~~~~~~i~~~l~~~~l~ 171 (807)
.|.+.++++.++.|||||+..+. | ..-+-..+| .|-.. +++|+ +++..+++
T Consensus 79 ---~nHd~CM~~~~~aGIYvi~Dl~~-----------p-------~~sI~r~~P~~sw~~~l~~~~~-~vid~fa~---- 132 (314)
T PF03198_consen 79 ---KNHDECMSAFADAGIYVILDLNT-----------P-------NGSINRSDPAPSWNTDLLDRYF-AVIDAFAK---- 132 (314)
T ss_dssp ---S--HHHHHHHHHTT-EEEEES-B-----------T-------TBS--TTS------HHHHHHHH-HHHHHHTT----
T ss_pred ---CCHHHHHHHHHhCCCEEEEecCC-----------C-------CccccCCCCcCCCCHHHHHHHH-HHHHHhcc----
Confidence 57899999999999999998762 2 112323445 55433 34443 55666663
Q ss_pred cccCCceEeccccccccccccccCCCChHH----HHHHHHHHHhcCC-ccce
Q 003612 172 ASQGGPIILSQIENEYGMVEHSFLEKGPPY----VRWAAKLAVDLQT-GVPW 218 (807)
Q Consensus 172 ~~~ggpII~~QiENEyg~~~~~~~~~~~~y----~~~l~~~~~~~g~-~vp~ 218 (807)
-.+++++=+.||.-.-.. ......| .+-+++-.++.+. .+|+
T Consensus 133 ---Y~N~LgFf~GNEVin~~~--~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 133 ---YDNTLGFFAGNEVINDAS--NTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ----TTEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ---CCceEEEEecceeecCCC--CcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 369999999999865311 1123334 4445555555565 4554
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.10 E-value=6.7e-06 Score=87.78 Aligned_cols=116 Identities=21% Similarity=0.347 Sum_probs=84.1
Q ss_pred CCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHH
Q 003612 82 WNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMI 161 (807)
Q Consensus 82 Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i 161 (807)
|...||+||+|||+. .|++++.|+++||.|. ..+.+ |.. ..|.|+...+ .+...+++++|++.+
T Consensus 3 W~~~ep~~G~~n~~~---~D~~~~~a~~~gi~v~--gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFSG---ADAIVNFAKENGIKVR--GHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChHH---HHHHHHHHHHCCCEEE--EEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 899999999999998 8999999999999983 22222 433 5899987432 223456677777766
Q ss_pred HHHHHhcccccccCCceEecccccccccccc------cc-CCCChHHHHHHHHHHHhcCCccceEEec
Q 003612 162 VNMMKAARLYASQGGPIILSQIENEYGMVEH------SF-LEKGPPYVRWAAKLAVDLQTGVPWVMCK 222 (807)
Q Consensus 162 ~~~l~~~~l~~~~ggpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 222 (807)
+.+. +|.|.+|+|-||.-.... .| ...+.+|+...-+.+|+.+.++.++.++
T Consensus 67 ~~ry---------~g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRY---------KGKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHh---------CCcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 6654 367999999999654210 11 1134578888888999998888888875
No 18
>PLN02705 beta-amylase
Probab=98.00 E-value=1.5e-05 Score=91.70 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=86.9
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC-CCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCC-----C
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP-QPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYG-----G 130 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~G-----G 130 (807)
.++..+..|+++|++|+..|.+-|.|...|. .|++|||+| ..++++++++.||++.+-..=--||- +-| -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCccccc
Confidence 5677899999999999999999999999998 699999999 89999999999999865443333544 112 2
Q ss_pred CCccccc----CCCccccC--------------CC-h-----hhHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 131 LPFWLHD----VPGIVFRS--------------DN-E-----PFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 131 ~P~Wl~~----~p~~~~R~--------------~d-~-----~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
||.|+.. +|++.+.. ++ | .-++.+..||+..-..+++ ++ .+|.|.-+||.
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~--fl--~~g~I~eI~VG 415 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDD--LF--VEGLITAVEIG 415 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHH--hc--cCCceeEEEec
Confidence 8999963 56764421 11 1 1235556666666666663 22 34688888874
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=97.98 E-value=1.7e-05 Score=90.84 Aligned_cols=109 Identities=21% Similarity=0.241 Sum_probs=86.4
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHD 137 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~ 137 (807)
..|+++++.||++|+|++|+.|.|...+|. +|++|.++..=.+.+|+.|.++||.+|+-.=. | .+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-----f---d~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-----W---DLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-----C---CccHHHHh
Confidence 678999999999999999999999999999 78999877777899999999999999976531 2 48999975
Q ss_pred CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccccc
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYG 188 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg 188 (807)
..+- .++...+.+.+|.+.+++++. +.|-.|-.=||.-
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~---------d~v~~w~t~NEp~ 163 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG---------DRVKHWITLNEPW 163 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC---------CcCCEEEEecCcc
Confidence 5442 346667777777777777664 2455566667764
No 20
>PLN02905 beta-amylase
Probab=97.97 E-value=2e-05 Score=90.95 Aligned_cols=120 Identities=19% Similarity=0.360 Sum_probs=86.0
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC-CCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCC-----C
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP-QPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYG-----G 130 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~G-----G 130 (807)
.++..+..|+++|++|+..|.+-|.|...|. .|++|||+| ..++++++++.||++.+-..=--||- +-| -
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IP 359 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIP 359 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4566789999999999999999999999998 699999999 89999999999999876544334444 112 3
Q ss_pred CCccccc----CCCccccC--------------CC-h-----hhHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 131 LPFWLHD----VPGIVFRS--------------DN-E-----PFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 131 ~P~Wl~~----~p~~~~R~--------------~d-~-----~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
||.|+.. +|++.+.. ++ | .-++.+..||+..-..++. ++ .+|.|.-+||.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~--fl--~~g~I~eI~VG 433 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDE--FF--EDGVISMVEVG 433 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHH--Hh--cCCceEEEEec
Confidence 8999963 57765421 11 1 1235555566666666653 22 34688888884
No 21
>PLN02801 beta-amylase
Probab=97.93 E-value=2.6e-05 Score=88.62 Aligned_cols=120 Identities=24% Similarity=0.382 Sum_probs=86.9
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC-CCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCC-----C
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP-QPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYG-----G 130 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~G-----G 130 (807)
.++..+..|+++|++|+..|.+.|.|...|. .|++|||++ ..++.++++++||++.+-..=--||- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 6777899999999999999999999999998 599999999 89999999999999865443333443 111 2
Q ss_pred CCcccc----cCCCccccC--------------CC-hh-----hHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 131 LPFWLH----DVPGIVFRS--------------DN-EP-----FKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 131 ~P~Wl~----~~p~~~~R~--------------~d-~~-----~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
+|.|+. .+|++.+.. ++ |. =++.++.||+..-..+++ + -.++.|..+||.
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~--l~~~~I~eI~VG 184 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD--F--LEAGVIIDIEVG 184 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH--h--ccCCeeEEEEEc
Confidence 899996 356664321 11 11 135556666666666663 2 234788888884
No 22
>PLN02803 beta-amylase
Probab=97.92 E-value=3.2e-05 Score=88.23 Aligned_cols=119 Identities=21% Similarity=0.381 Sum_probs=86.7
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCC-----C
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYG-----G 130 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~G-----G 130 (807)
.++..+..|+++|++|+..|.+-|.|...|.. |++|||+| ..++++++++.||++.+-..=--||- +-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 45667899999999999999999999999985 99999999 89999999999999875543333443 111 2
Q ss_pred CCcccc----cCCCccccCC--------------C-hh-----hHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 131 LPFWLH----DVPGIVFRSD--------------N-EP-----FKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 131 ~P~Wl~----~~p~~~~R~~--------------d-~~-----~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
+|.|+. ++|++.+... + |. =++.+..||+..-..+++ ++ ++.|..+||.
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~l---~~~I~eI~VG 253 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKD--YL---GGVIAEIQVG 253 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEec
Confidence 899996 3577654211 1 11 134566666666667663 32 4788888884
No 23
>PLN00197 beta-amylase; Provisional
Probab=97.89 E-value=3.8e-05 Score=87.92 Aligned_cols=119 Identities=20% Similarity=0.384 Sum_probs=86.9
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC-CCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCC-----C
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP-QPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYG-----G 130 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~G-----G 130 (807)
.++..+..|+++|++|+..|.+-|.|...|. .|++|||+| ..++++++++.||++.+-..=--||- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 5677899999999999999999999999998 799999999 89999999999999865543333443 112 3
Q ss_pred CCcccc----cCCCccccC--------------CC-hhh-----HHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 131 LPFWLH----DVPGIVFRS--------------DN-EPF-----KFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 131 ~P~Wl~----~~p~~~~R~--------------~d-~~~-----~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
+|.|+. ++|++.+.. ++ |.+ ++.+..|++..-..+++ ++ ++.|.-+||.
T Consensus 201 LP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~--~l---~~~I~eI~VG 273 (573)
T PLN00197 201 LPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKH--LL---GDTIVEIQVG 273 (573)
T ss_pred CCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHH--Hh---cCceeEEEec
Confidence 899996 357765421 11 111 35566666666666663 32 3568888884
No 24
>PLN02161 beta-amylase
Probab=97.89 E-value=3.7e-05 Score=87.32 Aligned_cols=119 Identities=16% Similarity=0.264 Sum_probs=86.4
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC-CCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCC-----C
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP-QPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYG-----G 130 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~G-----G 130 (807)
.++..+..|+++|++|+..|.+-|.|...|. .|++|||++ ..++.+++++.||++.+-..=--|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 4556788999999999999999999999998 799999999 89999999999999876544333333 111 2
Q ss_pred CCcccc----cCCCccccCC--------------C-hh-----hHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 131 LPFWLH----DVPGIVFRSD--------------N-EP-----FKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 131 ~P~Wl~----~~p~~~~R~~--------------d-~~-----~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
+|.|+. .+|++.+... + |. =++.++.|++..-..+++ ++ ++.|..+||.
T Consensus 191 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~--~~---~~~I~eI~VG 263 (531)
T PLN02161 191 LPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEP--YI---GNVIEEISIG 263 (531)
T ss_pred CCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHH--Hh---cCceEEEEec
Confidence 799996 3577654311 1 11 134566677777777763 32 4788888884
No 25
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.74 E-value=0.00013 Score=72.45 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=65.0
Q ss_pred CCCCCcEEEEEEEeCCCC--CCcceeEeCCcceEEEEEECCEEEEEEecccCCcceEEEeeeeecCCc-cEEEEEEecCC
Q 003612 455 KDASDYLWYNFRFKHDPS--DSESVLKVSSLGHVLHAFINGEFVGSAHGKHSDKSFTLEKMVHLINGT-NNVSLLSVMVG 531 (807)
Q Consensus 455 ~d~~GYllY~t~i~~~~~--~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvEn~G 531 (807)
....|+.|||++|..+.. .....|.++++++.+.|||||+++|...+... .+.+.+.-.|+.|. |+|.|.|-+..
T Consensus 64 ~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~--~~~~dIt~~l~~g~~N~l~V~v~~~~ 141 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYT--PFEFDITDYLKPGEENTLAVRVDNWP 141 (167)
T ss_dssp STCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS---EEEECGGGSSSEEEEEEEEEEESSS
T ss_pred cccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcC--CeEEeChhhccCCCCEEEEEEEeecC
Confidence 346899999999987653 24566889999999999999999999775432 34444443477786 99999998644
Q ss_pred cccccccc-cccccceeE-EEE
Q 003612 532 LPDSGAYL-ERRVAGLRN-VSI 551 (807)
Q Consensus 532 rvN~G~~~-~~~~KGI~g-V~l 551 (807)
.-.+-+.+ .....||.+ |.|
T Consensus 142 ~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 142 DGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp GGGCGBSSSEEE--EEESEEEE
T ss_pred CCceeecCcCCccCccccEEEE
Confidence 43321111 124578888 877
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.70 E-value=0.00016 Score=78.80 Aligned_cols=152 Identities=26% Similarity=0.462 Sum_probs=89.3
Q ss_pred CCeEE-ECCEEEEEEEEEee--CCCCChhcHHHHHHHHHHcCCCEEEEccc--CCcC--------CC----CCCeeeccC
Q 003612 34 GRSLI-INGHRKILFSGSIH--YPRSTPQMWPRLIAKAKEGGLDVVQTLVF--WNLH--------EP----QPGQFDFSG 96 (807)
Q Consensus 34 ~~~f~-ldG~~~~~~~g~~h--y~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h--------Ep----~~G~~df~g 96 (807)
++.|. -||+||+.++=..+ ..|...+.|+.-|+..|+.|||+|++=++ |... .| .++.+||+.
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~ 81 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTR 81 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT
T ss_pred CceEecCCCCEEeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCC
Confidence 45666 79999999975433 12468899999999999999999999886 4322 12 123367765
Q ss_pred c-----hhHHHHHHHHHHcCcEEEEee---CCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhc
Q 003612 97 R-----RDLVRFIKEVQAQGLYVCLRI---GPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAA 168 (807)
Q Consensus 97 ~-----~dl~~fl~~a~~~GL~Vilr~---GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~ 168 (807)
. ..+++.|+.|.+.||.+.|-| +||.-+-|-+| +. ..-.+..++|.+.|+++++..
T Consensus 82 ~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~---------~~-------~m~~e~~~~Y~~yv~~Ry~~~ 145 (289)
T PF13204_consen 82 PNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG---------PN-------IMPPENAERYGRYVVARYGAY 145 (289)
T ss_dssp ----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH----------------TT-------SS-HHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc---------cc-------CCCHHHHHHHHHHHHHHHhcC
Confidence 4 479999999999999986533 33433444332 11 112466889999999998743
Q ss_pred ccccccCCceEeccccccccccccccCCCChHHHHHHHHHHHhcCC
Q 003612 169 RLYASQGGPIILSQIENEYGMVEHSFLEKGPPYVRWAAKLAVDLQT 214 (807)
Q Consensus 169 ~l~~~~ggpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 214 (807)
.+|| |=|.||+ . ......++.+.+.+..++.+-
T Consensus 146 -------~Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp 178 (289)
T PF13204_consen 146 -------PNVI-WILGGDY-F----DTEKTRADWDAMARGIKENDP 178 (289)
T ss_dssp -------SSEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--
T ss_pred -------CCCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCC
Confidence 3566 7799999 1 223677888888888888754
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.58 E-value=6.1e-05 Score=84.21 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCccccc----ccCCCCCcc
Q 003612 60 MWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGE----WGYGGLPFW 134 (807)
Q Consensus 60 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaE----w~~GG~P~W 134 (807)
..+..|+++|++|+..|.+.|.|...|.. |++|||++ .+++.+++++.||++.+-..=--|+- .-.=-+|.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 56889999999999999999999999997 99999999 89999999999999876543333422 111137999
Q ss_pred ccc---CCCccccC--------------CChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 135 LHD---VPGIVFRS--------------DNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 135 l~~---~p~~~~R~--------------~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
+.. ..+|.+.. .... ++.++.|++.+...++. +. +.|..+||.
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~--~~----~~I~~I~vg 153 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSD--YL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHH--HH----TGEEEEEE-
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHH--HH----hhheEEEec
Confidence 962 22543211 1123 77778888888887764 22 678888874
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.10 E-value=0.00073 Score=74.73 Aligned_cols=157 Identities=17% Similarity=0.248 Sum_probs=104.5
Q ss_pred EEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEc--ccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCccc
Q 003612 46 LFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTL--VFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIE 123 (807)
Q Consensus 46 ~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyic 123 (807)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+. .|++++.|+++||.|--.+=
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~---~D~~~~~a~~~g~~vrGH~L---- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFES---ADAILDWARENGIKVRGHTL---- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HH---HHHHHHHHHHTT-EEEEEEE----
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCccc---hhHHHHHHHhcCcceeeeeE----
Confidence 688888876654432 4445555679998875 45999999999999997 89999999999999853321
Q ss_pred ccccCCCCCcccccCCCccccCC-ChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccccccccc---------c
Q 003612 124 GEWGYGGLPFWLHDVPGIVFRSD-NEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEH---------S 193 (807)
Q Consensus 124 aEw~~GG~P~Wl~~~p~~~~R~~-d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~---------~ 193 (807)
=|.. ..|.|+...+.. ... .+...+.++++++.++.+.+ +.|.|.+|-|=||.-.... -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~-------~~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYK-------DKGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTT-------TTTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhc-------cccceEEEEEeeecccCCCccccccCChh
Confidence 1333 689999854110 000 12356667777777766643 2289999999999754221 0
Q ss_pred cCCCChHHHHHHHHHHHhcCCccceEEecC
Q 003612 194 FLEKGPPYVRWAAKLAVDLQTGVPWVMCKQ 223 (807)
Q Consensus 194 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 223 (807)
|...+..|+...-+.+++...++.|+.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 111245788888889999888999998874
No 29
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0018 Score=73.94 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=72.8
Q ss_pred ChhcH-----HHHHHHHHHcCCCEEEEcccCCcCCCC----CCeeeccCchhHHHHHHHHHHcCcEEEEeeC----Cccc
Q 003612 57 TPQMW-----PRLIAKAKEGGLDVVQTLVFWNLHEPQ----PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG----PFIE 123 (807)
Q Consensus 57 ~~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~----~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G----Pyic 123 (807)
....| ++.+..||.+|||+||+++.|..+++. |...+-+-..=|++.|+.|++.||+|++..- .-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 55667 899999999999999999994443543 4333212111488999999999999998632 1111
Q ss_pred ccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 124 GEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 124 aEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
-| ..|.. ..-.. .+.....+..+.+.|+.+ +++...||++|+=||.-.
T Consensus 146 ~~------~s~~~--------~~~~~-~~~~~~~~~~~w~~ia~~---f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYT--------SDYKE-ENENVEATIDIWKFIANR---FKNYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccc--------ccccc-cchhHHHHHHHHHHHHHh---ccCCCceeeeeeecCCcc
Confidence 11 12221 11111 223333444555666543 466789999999999974
No 30
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.97 E-value=0.0021 Score=74.89 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=83.8
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCC--CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ--PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
..|+++++.||++|+|+-|+.|.|.-..|. +|++|-.|..=.+++|+.+.++||..++-.= -| .+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-----H~---dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-----HF---EMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-----CC---CCCHHHH
Confidence 468999999999999999999999999997 5678888877789999999999999887552 23 3899997
Q ss_pred cC-CCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccc
Q 003612 137 DV-PGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEY 187 (807)
Q Consensus 137 ~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEy 187 (807)
.. .+- .++...++..+|.+.++.++.. -|-.|-.=||.
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd---------rVk~WiT~NEp 179 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH---------KVKYWMTFNEI 179 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC---------cCCEEEEecCc
Confidence 53 442 3566777778888888777753 24455555664
No 31
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.97 E-value=0.0008 Score=77.96 Aligned_cols=111 Identities=22% Similarity=0.257 Sum_probs=82.1
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCC--CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ--PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWL 135 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl 135 (807)
-..|+++++.||++|+|+-|..|.|.-.+|. +|++|-.|..-.+.+|+.+.++||..|+-.= - -.+|.||
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-----H---~~~P~~l 128 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-----H---FDLPLWL 128 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-----S---S--BHHH
T ss_pred hhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-----e---cccccce
Confidence 3679999999999999999999999999999 6999999877789999999999999887542 1 2489999
Q ss_pred ccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 136 HDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 136 ~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
.+..+- .++.+.+.+.+|.+.+++++.. -|-.|=.=||...
T Consensus 129 ~~~ggw----~~~~~~~~F~~Ya~~~~~~~gd---------~V~~w~T~NEp~~ 169 (455)
T PF00232_consen 129 EDYGGW----LNRETVDWFARYAEFVFERFGD---------RVKYWITFNEPNV 169 (455)
T ss_dssp HHHTGG----GSTHHHHHHHHHHHHHHHHHTT---------TBSEEEEEETHHH
T ss_pred eecccc----cCHHHHHHHHHHHHHHHHHhCC---------CcceEEeccccce
Confidence 864442 2467778888888888888763 2445555666543
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.95 E-value=0.0029 Score=70.17 Aligned_cols=105 Identities=23% Similarity=0.419 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEEcccCCcCCCCC-CeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc----
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWNLHEPQP-GQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH---- 136 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~---- 136 (807)
+|.|+-||+.|+|.||.=| | +.|.. |..|.+. ..++.+.|+++||.|+|.+- |- -.|-.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~~~---~~~~akrak~~Gm~vlldfH-YS---------D~WaDPg~Q 90 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDLED---VIALAKRAKAAGMKVLLDFH-YS---------DFWADPGKQ 90 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHH---HHHHHHHHHHTT-EEEEEE--SS---------SS--BTTB-
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCHHH---HHHHHHHHHHCCCeEEEeec-cc---------CCCCCCCCC
Confidence 5899999999999999987 4 45554 4433332 44555666779999999874 21 12431
Q ss_pred cCCCccccC-CChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 137 DVPGIVFRS-DNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 137 ~~p~~~~R~-~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
..|.. .+. +...-.++|..|.+.++..|+. +|-.+=||||.||...
T Consensus 91 ~~P~a-W~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 91 NKPAA-WANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B--TT-CTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCcc-CCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 11221 222 2234567899999999999985 4668889999999764
No 33
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.94 E-value=0.0023 Score=74.36 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=84.6
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHD 137 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~ 137 (807)
..++++++.||++|+|+-|+.|.|+-.+|. .|.+|-.|..=.+++|+.+.++||.-++-.= -|+ +|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HFD---TPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CCC---CcHHHHH
Confidence 567999999999999999999999999997 5778888887889999999999998776542 233 8999976
Q ss_pred CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
..+- .++...+.+.+|.+.+++++ |. |-.|=-=||...
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~f---------gd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEF---------PE-VKYWTTFNEIGP 163 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHh---------CC-CCEEEEccchhh
Confidence 4442 34556666667777666665 34 666777777654
No 34
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.93 E-value=0.0024 Score=74.13 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=84.4
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHD 137 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~ 137 (807)
..|+++++.||++|+|+-|+.|.|+-.+|. +|.+|-.|..-.+++|+.+.++||..++-.- -|+ +|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HFD---TPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CCC---CcHHHHH
Confidence 568999999999999999999999999996 6788888877789999999999999887553 344 8999976
Q ss_pred CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
..+- .++...+++.+|.+.+++++. . |-.|--=||...
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg---------d-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP---------E-VNYWTTFNEIGP 162 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC---------C-CCEEEEecchhh
Confidence 5442 345566666777777766653 2 556666677543
No 35
>PLN02814 beta-glucosidase
Probab=96.88 E-value=0.0025 Score=74.60 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=86.4
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
-..|+++++.||++|+|+-|+.|.|+-.+|. +|.+|-.|..=.+++|+.+.++||..++-.= -|+ +|.||.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~ 147 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLE 147 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHH
Confidence 3678999999999999999999999999997 6889999987889999999999999877553 454 899997
Q ss_pred cC-CCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 137 DV-PGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 137 ~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
.. .+- .++...++..+|.+.+++++. .-|-.|-.=||...
T Consensus 148 ~~yGGW----~n~~~i~~F~~YA~~~f~~fg---------drVk~WiT~NEP~~ 188 (504)
T PLN02814 148 DEYGGW----INRKIIEDFTAFADVCFREFG---------EDVKLWTTINEATI 188 (504)
T ss_pred HhcCCc----CChhHHHHHHHHHHHHHHHhC---------CcCCEEEeccccch
Confidence 53 442 345556666677777766654 34556777777754
No 36
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.0053 Score=66.66 Aligned_cols=133 Identities=19% Similarity=0.283 Sum_probs=95.0
Q ss_pred HHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCC
Q 003612 68 AKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDN 147 (807)
Q Consensus 68 ~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d 147 (807)
.|+.+.=|-+.=.=|+..||++|.|+|+. -|+..+.|+++||.+-- =+.| |.. -.|.|+..+. -.-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe~---AD~ia~FAr~h~m~lhG--HtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFEA---ADAIANFARKHNMPLHG--HTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCccc---hHHHHHHHHHcCCeecc--ceee---ecc-cCCchhhccc-----cCh
Confidence 34433333334444999999999999999 69999999999996532 2222 433 4788997533 144
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccc----ccc---CCCChHHHHHHHHHHHhcCCccceEE
Q 003612 148 EPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVE----HSF---LEKGPPYVRWAAKLAVDLQTGVPWVM 220 (807)
Q Consensus 148 ~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~----~~~---~~~~~~y~~~l~~~~~~~g~~vp~~~ 220 (807)
++..+.|++++..++.+.+ |-|+.|-|=||.=.-+ +++ +-.+.+|+++.-+.+|+.+-+.-|+.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6778889988888777643 5699999999974321 111 12577999999999999888888887
Q ss_pred ecC
Q 003612 221 CKQ 223 (807)
Q Consensus 221 ~~~ 223 (807)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 764
No 37
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.82 E-value=0.003 Score=73.46 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=76.1
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCC--CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ--PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWL 135 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl 135 (807)
-..|+++++.||++|+|+.|+.+.|.-.+|. ++++|-+|..=.+++|+.+.++||.+++-.= -| .+|.||
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~-----H~---~~P~~l 141 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC-----HF---DVPMHL 141 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-----CC---CCCHHH
Confidence 3567999999999999999999999999997 5567877777789999999999999877552 22 489999
Q ss_pred ccC-CCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 136 HDV-PGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 136 ~~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
... .+- .++...+++.+|.+.+++++.
T Consensus 142 ~~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 142 VTEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HHhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 743 442 345566777777777777765
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.74 E-value=0.026 Score=56.65 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=83.8
Q ss_pred CCCChhcHHHHHHHHHHcCCCEEEEcccCCcCC-----CC---CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 54 PRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHE-----PQ---PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 54 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
-.++++.|+++|+.||++|+|+|=+- |.... |. ++.|.-...-=|+.+|++|++.||+|.+..+ .
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 46799999999999999999998532 22111 22 1222222223489999999999999999664 1
Q ss_pred ccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCCCChHHHHHH
Q 003612 126 WGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEKGPPYVRWA 205 (807)
Q Consensus 126 w~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~~~~~~y~~~l 205 (807)
-|.|-.. .|... -..+-++|+..|.. .|.++...-+|=|-.|..... + ...+..+.|
T Consensus 88 -----~~~~w~~--------~~~~~---~~~~~~~v~~el~~---~yg~h~sf~GWYip~E~~~~~--~--~~~~~~~~l 144 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDW---EAERNKQVADELWQ---RYGHHPSFYGWYIPYEIDDYN--W--NAPERFALL 144 (166)
T ss_pred -----Cchhhhc--------cCHHH---HHHHHHHHHHHHHH---HHcCCCCCceEEEecccCCcc--c--chHHHHHHH
Confidence 1334331 22222 11233446666663 367788999999999997642 2 345566666
Q ss_pred HHHHHhcCCccce
Q 003612 206 AKLAVDLQTGVPW 218 (807)
Q Consensus 206 ~~~~~~~g~~vp~ 218 (807)
.+.+++.--+-|+
T Consensus 145 ~~~lk~~s~~~Pv 157 (166)
T PF14488_consen 145 GKYLKQISPGKPV 157 (166)
T ss_pred HHHHHHhCCCCCe
Confidence 6666554223343
No 39
>PLN02998 beta-glucosidase
Probab=96.74 E-value=0.0034 Score=73.41 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=84.9
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
-..|+++++.||++|+|+-|+.|.|+-.+|. .|.+|-.|..-.+++|+.+.++||..++-.= -|+ +|.||.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~d---lP~~L~ 152 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HFD---LPQALE 152 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHH
Confidence 3568999999999999999999999999997 6778988888889999999999998776542 344 899997
Q ss_pred cC-CCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 137 DV-PGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 137 ~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
.. .+- .++...+++.+|.+.+++++.. -|-.|=-=||.-.
T Consensus 153 ~~yGGW----~n~~~v~~F~~YA~~~~~~fgd---------rVk~WiT~NEP~~ 193 (497)
T PLN02998 153 DEYGGW----LSQEIVRDFTAYADTCFKEFGD---------RVSHWTTINEVNV 193 (497)
T ss_pred HhhCCc----CCchHHHHHHHHHHHHHHHhcC---------cCCEEEEccCcch
Confidence 53 552 3445666667777777776642 3445666666654
No 40
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.63 E-value=0.0054 Score=71.48 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=76.8
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCC--CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ--PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
..|+++++.||++|+|+-|+.|.|+-.+|. +|++|-.|..=.+++|+.+.++||.-++-.= -|+ +|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~d---lP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HFE---MPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CCC---CCHHHH
Confidence 668999999999999999999999999997 5668888877788999999999998777552 344 899996
Q ss_pred cC-CCccccCCChhhHHHHHHHHHHHHHHHHh
Q 003612 137 DV-PGIVFRSDNEPFKFHMKRYATMIVNMMKA 167 (807)
Q Consensus 137 ~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~~ 167 (807)
.. .+- .++...+++.+|.+.+++++..
T Consensus 139 ~~yGGW----~n~~~i~~F~~YA~~~f~~fgd 166 (476)
T PRK09589 139 TEYGGW----RNRKLIDFFVRFAEVVFTRYKD 166 (476)
T ss_pred HhcCCc----CChHHHHHHHHHHHHHHHHhcC
Confidence 43 453 2445566677777777777653
No 41
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.61 E-value=0.0064 Score=70.91 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=76.3
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCC--CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ--PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
..|+++++.||++|+|+-|+.|.|+-.+|. +|++|=.|..-.+++|+.+.++||..++-.= -|+ +|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~d---lP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HFD---CPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CCHHHH
Confidence 678999999999999999999999999997 6678888877789999999999998776442 343 899997
Q ss_pred cC-CCccccCCChhhHHHHHHHHHHHHHHHHh
Q 003612 137 DV-PGIVFRSDNEPFKFHMKRYATMIVNMMKA 167 (807)
Q Consensus 137 ~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~~ 167 (807)
.. .+- .++...++..+|.+.+++++..
T Consensus 145 ~~~GGW----~n~~~v~~F~~YA~~~~~~fgd 172 (478)
T PRK09593 145 EEYGGW----RNRKMVGFYERLCRTLFTRYKG 172 (478)
T ss_pred hhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 53 553 2445556666677777666653
No 42
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.011 Score=63.31 Aligned_cols=112 Identities=22% Similarity=0.267 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHH---cCcEEEEeeCCcccccccCCCCCcccc-
Q 003612 61 WPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQA---QGLYVCLRIGPFIEGEWGYGGLPFWLH- 136 (807)
Q Consensus 61 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~---~GL~Vilr~GPyicaEw~~GG~P~Wl~- 136 (807)
=+|.|+-+|+.|+|.||.-| |+.---.-|.=-=.|+.|+...+++|++ .||+|++.+= |- |+ |..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-YS----Df-----waDP 133 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-YS----DF-----WADP 133 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-ch----hh-----ccCh
Confidence 36899999999999999875 5544333344334577899999988754 7999999763 11 11 321
Q ss_pred ---cCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 137 ---DVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 137 ---~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
+.|+.-.--+-..-..++-.|.+..+..|+++ |=-+=|+||.||-.+
T Consensus 134 akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 134 AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 12221111222344567889999999999864 556779999999754
No 43
>PLN02849 beta-glucosidase
Probab=96.51 E-value=0.0063 Score=71.28 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=77.3
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
-..|+++++.||++|+|+-|+.|.|.-.+|. .|.+|-.|..=.+++|+.+.++||.-++-.= -|+ +|.||.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~ 149 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HYD---HPQYLE 149 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CCC---CcHHHH
Confidence 3568999999999999999999999999997 4778888877789999999999999876542 344 899997
Q ss_pred cC-CCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 137 DV-PGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 137 ~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
.. .+- .++...+++.+|.+.+++++.
T Consensus 150 ~~yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 150 DDYGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred HhcCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 53 442 345566667777777777765
No 44
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.38 E-value=0.0063 Score=60.28 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=49.9
Q ss_pred CCCceEEEEEEECCCCC--CceEEeeCCCc-eEEEEEcCeeeeeccccccCCCCCCcceeeccCcccccccc-cEEEEE
Q 003612 597 HQPLTWYKTVFDAPTGS--DPVAINLISMG-KGEAWVNGQSIGRYWVSFLTPQGTPSQSWYHIPRSFLKPTG-NLLVLL 671 (807)
Q Consensus 597 ~~~p~fYk~~F~~~~~~--d~~fLd~~g~g-KG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~g~-N~IvIf 671 (807)
.....||+.+|++|+.. ..++|.+.|.. ...|||||+.+|+-.. +-...-+.|+ ..|++|+ |+|.|.
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~-------~~~~~~~dIt-~~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG-------GYTPFEFDIT-DYLKPGEENTLAVR 136 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES-------TTS-EEEECG-GGSSSEEEEEEEEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC-------CcCCeEEeCh-hhccCCCCEEEEEE
Confidence 34679999999998643 45799998855 8999999999999653 2222334474 5788888 988874
No 45
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.71 E-value=0.06 Score=64.76 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCCCcEEEEEEEeCCCC--CCcceeEeCCcceEEEEEECCEEEEEEecccCCcceEEEeeeeecCCc-cEEEEEEecC
Q 003612 456 DASDYLWYNFRFKHDPS--DSESVLKVSSLGHVLHAFINGEFVGSAHGKHSDKSFTLEKMVHLINGT-NNVSLLSVMV 530 (807)
Q Consensus 456 d~~GYllY~t~i~~~~~--~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILvEn~ 530 (807)
+..|..|||++|.++.. .....|.+.++.-.+.|||||+.||.-.+... .+.+.+.-.|+.|. |+|.|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~--~f~~DIT~~l~~G~~n~L~V~v~n~ 137 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYT--PFEADITPYVYAGKSVRITVCVNNE 137 (604)
T ss_pred CCcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCcc--ceEEeCchhccCCCceEEEEEEecC
Confidence 35789999999987542 24567889999999999999999998765432 34444333366674 4999999774
No 46
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.035 Score=63.67 Aligned_cols=97 Identities=26% Similarity=0.386 Sum_probs=75.2
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCe--eeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQ--FDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWL 135 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl 135 (807)
-..++++++.||+||+|+.|+.|.|+-.-|.++. .|=.|..=.+++++.|.++||.-++-.- -|+ +|.||
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L 129 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWL 129 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHH
Confidence 3567999999999999999999999999997654 8888877789999999999999887653 344 79999
Q ss_pred ccC-CCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 136 HDV-PGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 136 ~~~-p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
.+. .+- .+..-.++..+|.+.++.++.
T Consensus 130 ~~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 130 QKPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hhccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 865 342 233445556666666666665
No 47
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=95.00 E-value=0.02 Score=64.93 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=109.8
Q ss_pred eEEECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcC-CC---CCCeeec-cCchhHHHHHHHHHHc
Q 003612 36 SLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLH-EP---QPGQFDF-SGRRDLVRFIKEVQAQ 110 (807)
Q Consensus 36 ~f~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~df-~g~~dl~~fl~~a~~~ 110 (807)
.|.|+++++..++..--++++-.++.+++|+-|+-+|++++|+.+ +- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~fi---LDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLFI---LDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEEE---ecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 388899998888776667777788899999999999999999972 33 44 2333221 2334589999999999
Q ss_pred CcEEEEeeCCcccccccCCCCCc---ccc-cCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccc
Q 003612 111 GLYVCLRIGPFIEGEWGYGGLPF---WLH-DVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENE 186 (807)
Q Consensus 111 GL~Vilr~GPyicaEw~~GG~P~---Wl~-~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENE 186 (807)
+|+|+++. |.+-=++||.-. |.. ..|+-.+ .|+.+....++|...+++- |+.++.|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~-------yk~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKP-------YKLDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhh-------hccChHHHHHHhcCC
Confidence 99998864 444445777642 442 2344222 2555655566666655542 467899999999999
Q ss_pred ccccccccCCCChHHHHHHHHHHHh
Q 003612 187 YGMVEHSFLEKGPPYVRWAAKLAVD 211 (807)
Q Consensus 187 yg~~~~~~~~~~~~y~~~l~~~~~~ 211 (807)
.-.. . ...+..+++|+++|+--
T Consensus 148 ~lv~-~--p~s~N~f~~w~~emy~y 169 (587)
T COG3934 148 PLVE-A--PISVNNFWDWSGEMYAY 169 (587)
T ss_pred cccc-c--cCChhHHHHHHHHHHHH
Confidence 4331 1 13578899999999743
No 48
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.70 E-value=0.14 Score=65.21 Aligned_cols=90 Identities=23% Similarity=0.421 Sum_probs=60.4
Q ss_pred CCcEEEEEEEeCCCC--CC-cceeEeCCcceEEEEEECCEEEEEEecccCCcceEEEeeeeecCCccEEEEEEecCCccc
Q 003612 458 SDYLWYNFRFKHDPS--DS-ESVLKVSSLGHVLHAFINGEFVGSAHGKHSDKSFTLEKMVHLINGTNNVSLLSVMVGLPD 534 (807)
Q Consensus 458 ~GYllY~t~i~~~~~--~~-~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvN 534 (807)
.|-.|||++|.++.. +. ...|.++++.-.+.|||||++||.-.+.. ..+.+.+.-.|+.|.|+|.|.|-.. .
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~---s 193 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW---S 193 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec---C
Confidence 367899999987643 12 46788999999999999999999865432 2344443333677889999988422 1
Q ss_pred ccccccc----cccceeE-EEEC
Q 003612 535 SGAYLER----RVAGLRN-VSIQ 552 (807)
Q Consensus 535 ~G~~~~~----~~KGI~g-V~l~ 552 (807)
.|.++++ ...||.. |.|.
T Consensus 194 dgs~~e~qd~w~~sGI~R~V~L~ 216 (1027)
T PRK09525 194 DGSYLEDQDMWRMSGIFRDVSLL 216 (1027)
T ss_pred CCCccccCCceeeccccceEEEE
Confidence 2222221 2368888 8873
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.61 E-value=0.21 Score=48.40 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCCEEEEccc-------C--CcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCc
Q 003612 63 RLIAKAKEGGLDVVQTLVF-------W--NLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPF 133 (807)
Q Consensus 63 ~~l~k~ka~G~N~V~~yv~-------W--n~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~ 133 (807)
+-++.+|++|.|+|.++.= | ..|.+.|+- ..+- |..+++.|++.||.|++|...- -.|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dl---lge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDL---LGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCH---HHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998542 2 345555654 2222 5899999999999999998754 33444445699
Q ss_pred ccccCCC
Q 003612 134 WLHDVPG 140 (807)
Q Consensus 134 Wl~~~p~ 140 (807)
|+.++++
T Consensus 79 W~~~~~~ 85 (132)
T PF14871_consen 79 WFVRDAD 85 (132)
T ss_pred eeeECCC
Confidence 9975443
No 50
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.58 E-value=0.11 Score=66.01 Aligned_cols=90 Identities=18% Similarity=0.335 Sum_probs=61.4
Q ss_pred CCcEEEEEEEeCCCC--CCcceeEeCCcceEEEEEECCEEEEEEecccCCcceEEEeeeeecCCccEEEEEEecCCcccc
Q 003612 458 SDYLWYNFRFKHDPS--DSESVLKVSSLGHVLHAFINGEFVGSAHGKHSDKSFTLEKMVHLINGTNNVSLLSVMVGLPDS 535 (807)
Q Consensus 458 ~GYllY~t~i~~~~~--~~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvN~ 535 (807)
.|--|||++|.++.. .....|.+.++.-.++|||||++||.-.+... .+.+.+.-.|+.|.|+|.|.|.+.. .
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~--pfefDIT~~l~~G~N~LaV~V~~~~---d 182 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRL--TAEFDISAMVKTGDNLLCVRVMQWA---D 182 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccCCCc--cEEEEcchhhCCCccEEEEEEEecC---C
Confidence 356799999987643 24567889999999999999999998664332 3444433336778899999886432 2
Q ss_pred cccccc----cccceeE-EEEC
Q 003612 536 GAYLER----RVAGLRN-VSIQ 552 (807)
Q Consensus 536 G~~~~~----~~KGI~g-V~l~ 552 (807)
|.++++ ...||.. |.|.
T Consensus 183 ~s~le~qd~w~~sGI~R~V~L~ 204 (1021)
T PRK10340 183 STYLEDQDMWWLAGIFRDVYLV 204 (1021)
T ss_pred CCccccCCccccccccceEEEE
Confidence 222221 2368888 8774
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=93.98 E-value=0.24 Score=54.71 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=74.7
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCC-------cCCCC-------CCe-eeccCchhHHHHHHHHHHcCcEEEEeeCCc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWN-------LHEPQ-------PGQ-FDFSGRRDLVRFIKEVQAQGLYVCLRIGPF 121 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn-------~hEp~-------~G~-~df~g~~dl~~fl~~a~~~GL~Vilr~GPy 121 (807)
.++.-++.|++++++|||+|-.-|-+. -.+|. +|. -.|+- |+.+|+.|++.||.|..++-..
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~Dp---L~~~I~eaHkrGlevHAW~~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDP---LEFMIEEAHKRGLEVHAWFRVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccH---HHHHHHHHHHcCCEEEEEEEee
Confidence 678889999999999999998766432 12221 111 01444 9999999999999999876111
Q ss_pred ccccc---cCCCCCcccc-cCCCccccC----CCh----hhHHHHHHHHHHHHHHHHhcccccccCCceEecccc
Q 003612 122 IEGEW---GYGGLPFWLH-DVPGIVFRS----DNE----PFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE 184 (807)
Q Consensus 122 icaEw---~~GG~P~Wl~-~~p~~~~R~----~d~----~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE 184 (807)
..+.- -.-..|.|+. +.++..... .+. +-.++|++|+..++..|.++ + +|=++|++
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~-Y------dvDGIhlD 161 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKN-Y------DVDGIHLD 161 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhc-C------CCCeEEec
Confidence 11100 0112478875 445532222 122 34578999999988888753 2 36678876
No 52
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=92.25 E-value=0.33 Score=56.97 Aligned_cols=142 Identities=14% Similarity=0.113 Sum_probs=70.4
Q ss_pred eeCCCCChhcHHHHHHHHH-HcCCCEEEEcccC----Cc-CC-CCCC--eeeccCchhHHHHHHHHHHcCcEEEEeeCCc
Q 003612 51 IHYPRSTPQMWPRLIAKAK-EGGLDVVQTLVFW----NL-HE-PQPG--QFDFSGRRDLVRFIKEVQAQGLYVCLRIGPF 121 (807)
Q Consensus 51 ~hy~r~~~~~W~~~l~k~k-a~G~N~V~~yv~W----n~-hE-p~~G--~~df~g~~dl~~fl~~a~~~GL~Vilr~GPy 121 (807)
-|.-..-++.|+..|+.++ ++||..||+.-.- .. .+ ...| .|||+. +|.+++...++||+-.+..|-
T Consensus 31 g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~---lD~i~D~l~~~g~~P~vel~f- 106 (486)
T PF01229_consen 31 GRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTY---LDQILDFLLENGLKPFVELGF- 106 (486)
T ss_dssp S-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HH---HHHHHHHHHHCT-EEEEEE-S-
T ss_pred CchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHH---HHHHHHHHHHcCCEEEEEEEe-
Confidence 3443456788999999996 7899999985221 11 11 1233 399998 999999999999999888772
Q ss_pred ccccccCCCCCcccccCCCccccCC----ChhhHHHHHHHHHHHHHHHHhcccccccCCceE--eccccccccccccccC
Q 003612 122 IEGEWGYGGLPFWLHDVPGIVFRSD----NEPFKFHMKRYATMIVNMMKAARLYASQGGPII--LSQIENEYGMVEHSFL 195 (807)
Q Consensus 122 icaEw~~GG~P~Wl~~~p~~~~R~~----d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII--~~QiENEyg~~~~~~~ 195 (807)
.|.++.......+... -|.-.+.+.++++++++++..+ |+. .-|- .++|.||.....-...
T Consensus 107 ---------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~R---YG~-~ev~~W~fEiWNEPd~~~f~~~ 173 (486)
T PF01229_consen 107 ---------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDR---YGI-EEVSTWYFEIWNEPDLKDFWWD 173 (486)
T ss_dssp ---------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHH---HHH-HHHTTSEEEESS-TTSTTTSGG
T ss_pred ---------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhh---cCC-ccccceeEEeCcCCCcccccCC
Confidence 4555543222112111 1222344455555555554432 110 0111 4689999865311011
Q ss_pred CCChHHHHHHHHHH
Q 003612 196 EKGPPYVRWAAKLA 209 (807)
Q Consensus 196 ~~~~~y~~~l~~~~ 209 (807)
....+|.+.-+..+
T Consensus 174 ~~~~ey~~ly~~~~ 187 (486)
T PF01229_consen 174 GTPEEYFELYDATA 187 (486)
T ss_dssp G-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 12345665554443
No 53
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=0.93 Score=51.83 Aligned_cols=124 Identities=20% Similarity=0.254 Sum_probs=82.0
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcc-------------cCCcCCCCCCeeecc-CchhHHHHHHHHHHcCcEEEEeeCCc
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLV-------------FWNLHEPQPGQFDFS-GRRDLVRFIKEVQAQGLYVCLRIGPF 121 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~GL~Vilr~GPy 121 (807)
..+....+.|.+++++|+|||-.-| +|..-. ||+.-=+ |.-=|...|++|++.||.|+.++-||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3788899999999999999997544 244332 4443212 22237888999999999999998888
Q ss_pred ccccccCCC---CCccccc-CCCcc-ccCCC-------hhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccccc
Q 003612 122 IEGEWGYGG---LPFWLHD-VPGIV-FRSDN-------EPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYG 188 (807)
Q Consensus 122 icaEw~~GG---~P~Wl~~-~p~~~-~R~~d-------~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg 188 (807)
.-|--..-. -|.|+.. .|+.. .|... .++..+|+.|+..++-.+.++ + .|-++|.+-=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~-Y------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN-Y------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhC-C------CCCceecceeec
Confidence 866532221 2667753 24422 23332 256788999999888777752 2 455688765544
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.50 E-value=2 Score=52.05 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=79.0
Q ss_pred HHHH-HHHHHcCCCEEEE-cccCCcCCCCCCee----------eccCchhHHHHHHHHHHcCcEEEEeeCCcccc-----
Q 003612 62 PRLI-AKAKEGGLDVVQT-LVFWNLHEPQPGQF----------DFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEG----- 124 (807)
Q Consensus 62 ~~~l-~k~ka~G~N~V~~-yv~Wn~hEp~~G~~----------df~g~~dl~~fl~~a~~~GL~Vilr~GPyica----- 124 (807)
.+.| .-+|++|+|+|.+ .|+..-.... --| .|....||.+|++.|+++||.|||..=+==++
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 3454 7779999999998 6654211100 011 35566799999999999999999974321111
Q ss_pred cccCCCCCcccccCCCcccc----CCChhh-HHHHHHHHHHHHHHHHhc----ccccccCCceEeccc--------cccc
Q 003612 125 EWGYGGLPFWLHDVPGIVFR----SDNEPF-KFHMKRYATMIVNMMKAA----RLYASQGGPIILSQI--------ENEY 187 (807)
Q Consensus 125 Ew~~GG~P~Wl~~~p~~~~R----~~d~~~-~~~~~~~~~~i~~~l~~~----~l~~~~ggpII~~Qi--------ENEy 187 (807)
-+.+.|.|.|...++...-. +.+-.+ .+.|++|+-..+....++ ++-...-..++.++- .||+
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~ 317 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNED 317 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccccccc
Confidence 12233444443222110000 000011 245666666555555432 111111123333222 2444
Q ss_pred cccccccCCCChHHHHHHHHHHHhcCCccceEE
Q 003612 188 GMVEHSFLEKGPPYVRWAAKLAVDLQTGVPWVM 220 (807)
Q Consensus 188 g~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 220 (807)
+.. ....+..|++.+.+.+++..-++-++.
T Consensus 318 ~~~---~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 318 GGR---ENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred CCc---CChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 321 011346799999998888766654443
No 55
>smart00642 Aamy Alpha-amylase domain.
Probab=91.49 E-value=0.55 Score=47.14 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=46.9
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCC-------CCCCee-----eccCchhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHE-------PQPGQF-----DFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-------p~~G~~-----df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
-+-+.+.|.-+|++|+|+|.+.=++.... -.+..| .|....|+.+|++.|+++||+||+..=|-=++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 34456777789999999998854433222 111222 355668999999999999999999765433333
No 56
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=90.27 E-value=0.87 Score=52.96 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=95.3
Q ss_pred CeEEECCEEEEEEEEEeeCC-----CCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHH
Q 003612 35 RSLIINGHRKILFSGSIHYP-----RSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQA 109 (807)
Q Consensus 35 ~~f~ldG~~~~~~~g~~hy~-----r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~ 109 (807)
..|.+|+.|.++.+++.-+. |..-+.-+-.|+.++++|+|++|++ . - |...-+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRVW---G-----G------GvYEsd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRVW---G-----G------GVYESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEEe---c-----C------ccccchhHHHHhhh
Confidence 46889999999888743322 2344556677999999999999995 1 1 22335899999999
Q ss_pred cCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccccc-
Q 003612 110 QGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYG- 188 (807)
Q Consensus 110 ~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg- 188 (807)
.||.|--.. =+.||-. -.|..|+..|++=.+.-+.+|+ .++.||.|-=.||=-
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccHH
Confidence 999774222 1345441 1467799888877777666665 468899987666532
Q ss_pred -ccccccCC-------CChH----HHHHHHHHHHhcCCccceEEecC
Q 003612 189 -MVEHSFLE-------KGPP----YVRWAAKLAVDLQTGVPWVMCKQ 223 (807)
Q Consensus 189 -~~~~~~~~-------~~~~----y~~~l~~~~~~~g~~vp~~~~~~ 223 (807)
-.+.-|+. .-+. |.+-++++.....-..|+++...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 11111221 1223 33445566655566789887653
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.99 E-value=4.8 Score=48.93 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEE-ccc-------CCcC-----CCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 65 IAKAKEGGLDVVQT-LVF-------WNLH-----EPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 65 l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+.-+|++|+|+|+. .|. |.+. .|.+ .|....|+..|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999996 221 3221 1111 24556799999999999999999863
No 58
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.53 E-value=6.1 Score=42.51 Aligned_cols=127 Identities=16% Similarity=0.218 Sum_probs=75.7
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEE-EeeCCcccccccCCCCCcccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVC-LRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lr~GPyicaEw~~GG~P~Wl~ 136 (807)
...|.+.|+.++++|++.|++.+. .. ...+...+++. .++..+.+.++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~-~~-~~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVD-ET-DDRLSRLDWSR-EQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecC-Cc-cchhhccCCCH-HHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 577999999999999999999532 22 22233445543 468899999999999986 34331 01111
Q ss_pred cCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCCC-------ChHHHHHHHHHH
Q 003612 137 DVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEK-------GPPYVRWAAKLA 209 (807)
Q Consensus 137 ~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~ 209 (807)
+-..|+.-.+...+++++.+...+. + |.++|.+- ..++. ++.. -.+.++.+.+.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~-~~~~~-----~~~~~~~~~~~~~~~l~~l~~~A 142 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLARD--L----GIRTIQLA-GYDVY-----YEEHDEETRRRFREGLKEAVELA 142 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEec-Ccccc-----cCcCCHHHHHHHHHHHHHHHHHH
Confidence 1223455555556677777777663 2 45666442 11111 1111 124566777778
Q ss_pred HhcCCcc
Q 003612 210 VDLQTGV 216 (807)
Q Consensus 210 ~~~g~~v 216 (807)
++.|+.+
T Consensus 143 ~~~Gv~l 149 (279)
T TIGR00542 143 ARAQVTL 149 (279)
T ss_pred HHcCCEE
Confidence 8777764
No 59
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=89.27 E-value=1.6 Score=48.29 Aligned_cols=111 Identities=21% Similarity=0.326 Sum_probs=73.4
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcc-------cCCcCCCCCCeeec--cCchhHHHHHHHHHHcCcEEEEeeCCccccccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLV-------FWNLHEPQPGQFDF--SGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWG 127 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv-------~Wn~hEp~~G~~df--~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~ 127 (807)
.++..+..|+.+++.|+|+|-+-| .+..-.|..-+..- ....|+.++++.++++||++|.|.--+.--..
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 567789999999999999998765 34333333222211 12479999999999999999999753331111
Q ss_pred CCCCCccccc-CCCccccCCC-----hhhHHHHHHHHHHHHHHHHhc
Q 003612 128 YGGLPFWLHD-VPGIVFRSDN-----EPFKFHMKRYATMIVNMMKAA 168 (807)
Q Consensus 128 ~GG~P~Wl~~-~p~~~~R~~d-----~~~~~~~~~~~~~i~~~l~~~ 168 (807)
..--|.|-.+ ..+-..|..+ .+|.+.+.+|.-.|+..+++.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 1114666642 2222234322 378899999999999998864
No 60
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=86.71 E-value=0.9 Score=45.01 Aligned_cols=65 Identities=31% Similarity=0.291 Sum_probs=36.8
Q ss_pred EeeeecCC-CC-CCCCCC-----CcCcccCCChHHHHHHHhCCCceeE-Eeec---CCCccC-CCCC--CCCcEEEEEEE
Q 003612 740 ILFASYGN-PN-GNCENY-----AIGSCHSSNSRAIVEKACLGKRSCT-VPVW---TEKFYG-DPCP--GIPKALLVDAQ 805 (807)
Q Consensus 740 I~~A~YGr-~~-~~C~~~-----~~~~C~~~~s~~~V~~~C~Gk~~C~-i~a~---~~~Fg~-DPCp--gt~KYL~V~Y~ 805 (807)
|..|.||. +. ..+... ....+...+.+-.++... +.++- |+.. ..+.|. |||| |..|.|.|.|+
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV--~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALV--KDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEe--ecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 88999999 33 233221 122344445544444433 33433 2221 123342 9999 88999999997
Q ss_pred e
Q 003612 806 C 806 (807)
Q Consensus 806 C 806 (807)
.
T Consensus 133 f 133 (151)
T PF11875_consen 133 F 133 (151)
T ss_pred E
Confidence 4
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=86.08 E-value=11 Score=46.32 Aligned_cols=54 Identities=17% Similarity=0.367 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------CCcC-----CCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 63 RLIAKAKEGGLDVVQT-LVF-------WNLH-----EPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 63 ~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
+.|.-+|++|+|+|.. .|+ |.+. .|.+ .|....|+..|++.|+++||.|||..=
T Consensus 274 ~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 274 QLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred HHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3467889999999986 332 4321 1111 356667999999999999999999743
No 62
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=85.02 E-value=1 Score=48.05 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCcCCCCCC--eee-------ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWNLHEPQPG--QFD-------FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+.|.-+|++|+|+|.+.=++...+..-| .-| |....|+.+|++.|++.||+|||..
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 56788999999999998654442211111 112 4455799999999999999999874
No 63
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=84.87 E-value=1.5 Score=49.34 Aligned_cols=72 Identities=24% Similarity=0.233 Sum_probs=48.3
Q ss_pred EEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 47 FSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 47 ~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
+|=++++...+.+.....|++|+++|+..|=|. +|.|+...=+. ...+..+++.|+++||.|++...|=+-.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFTS----L~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFTS----LHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEEE----E---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEECC----CCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 455666666678999999999999999999886 88888432121 2358899999999999999999875543
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=83.54 E-value=17 Score=47.36 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------CCcC-----CCCCCeeeccCchhHHHHHHHHHHcCcEEEEe
Q 003612 63 RLIAKAKEGGLDVVQT-LVF-------WNLH-----EPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 63 ~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
+.|.-+|++|+|+|+. .|+ |.+. .|. =.|....|+.+|++.|+++||.|||.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~---~ryGt~~dfk~lVd~~H~~GI~VILD 834 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT---SRFGHPDEFRFLVDSLHQAGIGVLLD 834 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC---cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3468899999999986 332 4321 111 13556689999999999999999986
No 65
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=83.45 E-value=10 Score=43.12 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=72.3
Q ss_pred HHcCCCEEEEccc---------------CCc---CCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCC
Q 003612 69 KEGGLDVVQTLVF---------------WNL---HEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGG 130 (807)
Q Consensus 69 ka~G~N~V~~yv~---------------Wn~---hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG 130 (807)
|-+|||.+|.-|= |.- ..+..|.|||+....-..||+.|++.|+..++-+. =-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cC
Confidence 5699999997662 322 23567999999888888999999999999887653 13
Q ss_pred CCcccccCCCc----cccCC-ChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccc-------cccC-CC
Q 003612 131 LPFWLHDVPGI----VFRSD-NEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVE-------HSFL-EK 197 (807)
Q Consensus 131 ~P~Wl~~~p~~----~~R~~-d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~-------~~~~-~~ 197 (807)
.|.|+...... ...++ -+...+++..|+..+++.+++ .|=+|--+-.=||....= +.+. +.
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~------~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e 201 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKK------WGINFDYISPFNEPQWNWAGGSQEGCHFTNEE 201 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHC------TT--EEEEE--S-TTS-GG--SS-B----HHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHh------cCCccceeCCcCCCCCCCCCCCcCCCCCCHHH
Confidence 78888643211 00111 134556666677777777642 344666777779986420 0011 12
Q ss_pred ChHHHHHHHHHHHhcCCccceEEecC
Q 003612 198 GPPYVRWAAKLAVDLQTGVPWVMCKQ 223 (807)
Q Consensus 198 ~~~y~~~l~~~~~~~g~~vp~~~~~~ 223 (807)
..+.++.|.+..++.|+..-+..++.
T Consensus 202 ~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 202 QADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEecch
Confidence 34677888888888999876665553
No 66
>PLN02960 alpha-amylase
Probab=82.49 E-value=33 Score=43.07 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCEEEE-ccc-------CCcCCCCC--CeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQT-LVF-------WNLHEPQP--GQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~--G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
++.|.-+|++|+|+|.. .|+ |.+.-... =.-.|....||.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999997 332 43211000 00124556799999999999999999973
No 67
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=82.19 E-value=4.5 Score=52.50 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=67.9
Q ss_pred CeEEECCEEEEEEEE---EeeCCCC--ChhcHHHHHHHHHHcCCCEEEE-ccc----CCcCCCCCCee--e--c----cC
Q 003612 35 RSLIINGHRKILFSG---SIHYPRS--TPQMWPRLIAKAKEGGLDVVQT-LVF----WNLHEPQPGQF--D--F----SG 96 (807)
Q Consensus 35 ~~f~ldG~~~~~~~g---~~hy~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~----Wn~hEp~~G~~--d--f----~g 96 (807)
-.+.|||++++.+.+ +-..++. +-+.|++.|..+|++|+|+|-. .++ =|..--....+ | | .+
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 567777744444333 2345553 6688999999999999999975 433 01100011111 1 3 36
Q ss_pred chhHHHHHHHHHHc-CcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHH
Q 003612 97 RRDLVRFIKEVQAQ-GLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKF 152 (807)
Q Consensus 97 ~~dl~~fl~~a~~~-GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~ 152 (807)
..|+.++++.|++. ||++|+..=-- + ++=--.|+..+|+.-.-..+.++|+
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDvV~N-H----Ta~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDIVFN-H----TANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeeec-c----cccCCHHHHhChHhhcCCCCCchhh
Confidence 67899999999995 99999863100 0 1112348877776544444555554
No 68
>PRK09936 hypothetical protein; Provisional
Probab=82.07 E-value=3.4 Score=44.99 Aligned_cols=59 Identities=22% Similarity=0.411 Sum_probs=46.1
Q ss_pred CCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCc-hhHHHHHHHHHHcCcEEEEee
Q 003612 54 PRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGR-RDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 54 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~-~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+++++.|++.++.+++.|++|+-+ -|..-- .=||.+. --|.+.++.|++.||.|++..
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLiv--QWt~yG----~~~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLVV--QWTRYG----DADFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEE--Eeeecc----CCCcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 3579999999999999999999855 464431 1177654 248999999999999999843
No 69
>PRK05402 glycogen branching enzyme; Provisional
Probab=81.21 E-value=14 Score=45.63 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=37.2
Q ss_pred HHHHHHcCCCEEEE-ccc-------CCcCCCCCCee-----eccCchhHHHHHHHHHHcCcEEEEee
Q 003612 65 IAKAKEGGLDVVQT-LVF-------WNLHEPQPGQF-----DFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 65 l~k~ka~G~N~V~~-yv~-------Wn~hEp~~G~~-----df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
|.-+|++|+|+|.. .|+ |.+ .+..| .|....||.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY---~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGY---QPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC---CcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36779999999987 442 221 11111 25666799999999999999999973
No 70
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=81.01 E-value=4.2 Score=43.43 Aligned_cols=172 Identities=15% Similarity=0.028 Sum_probs=114.5
Q ss_pred EEeeCCCceEEEEEcCeeeeeccccccCC-C--CCCcceeeccCcccccccccEEEEEEecCCCCCeeEEEe-ecccccc
Q 003612 617 AINLISMGKGEAWVNGQSIGRYWVSFLTP-Q--GTPSQSWYHIPRSFLKPTGNLLVLLEEENGYPPGISIDT-VSVTTLC 692 (807)
Q Consensus 617 fLd~~g~gKG~v~VNG~nlGRYW~~~~~~-~--gGPQqtlYhVP~~~Lk~g~N~IvIfE~~~~~~~~i~~~~-~~~~~~c 692 (807)
.|+++=-+--+|-|---|.||+-.. .|+ + -.++.+=| .|..+-+--. +..+.....+.+.. +..+|+|
T Consensus 45 ~i~L~CP~~dvIsv~sanYGR~~~~-iC~pd~~~~~Si~C~-~p~s~~i~~~------rCnnr~~C~vvv~s~~F~~DPC 116 (265)
T KOG4729|consen 45 RITLSCPRGDVISVQSANYGRFSDK-ICDPDPGREESINCY-LPKSFSILSS------RCNNRRQCTVVVDSDVFGDDPC 116 (265)
T ss_pred eEEEEcCCCCEEEEEecccCccccc-ccCCccccccchhcc-ChHHHHHHHH------hcCCCceEEEEecCCccCCCCC
Confidence 3444443445677777799999865 453 2 23666777 7777543100 01122333343433 3455999
Q ss_pred cccc---cCCCCcccccccccccccccccccCCCCCceeeecCCCCeEeEEeeeecCC-CC--CCCCCC----CcCcccC
Q 003612 693 GHVS---DSHLPPVISWRSQNQRTLKTHKRIPGRRPKVQIRCPSGRKISKILFASYGN-PN--GNCENY----AIGSCHS 762 (807)
Q Consensus 693 ~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Cp~g~~I~~I~~A~YGr-~~--~~C~~~----~~~~C~~ 762 (807)
...+ |-+|-|| +-. .++...|.-+++..-|++...+ .+..+.+++ +. ..|+.- ..-.|..
T Consensus 117 PgT~KYLev~Y~Cv-------p~~--~~~kt~~~p~~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 186 (265)
T KOG4729|consen 117 PGTSKYLEVQYGCV-------PYA--FTEKTFCTPSPTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECV 186 (265)
T ss_pred CCchhheEEEeccC-------ccc--cccceEecCCCCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceee
Confidence 9999 8899887 211 2244567778888999998888 699999998 22 456542 2334445
Q ss_pred CChHHHHHHHhCCCceeEEeecCCCccCCCC-CCCCcEEEEEEEeC
Q 003612 763 SNSRAIVEKACLGKRSCTVPVWTEKFYGDPC-PGIPKALLVDAQCT 807 (807)
Q Consensus 763 ~~s~~~V~~~C~Gk~~C~i~a~~~~Fg~DPC-pgt~KYL~V~Y~C~ 807 (807)
...+..+...|.+++.|.+..++.-++ -+| ++..+|+.|.+.|+
T Consensus 187 ~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~n~e~~ 231 (265)
T KOG4729|consen 187 SSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHGHLHKVYVTVTEEIF 231 (265)
T ss_pred cccchhhhhcccccCCceeecCCcccc-ccccceeEEEEEeccccc
Confidence 578889999999999999999999887 777 45568999988774
No 71
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=80.88 E-value=1.1e+02 Score=35.02 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=119.2
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEc-------ccCCcCCCCCCeeeccCchh-HHHHHHHHHHcCcEEEEeeCCccccccc
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTL-------VFWNLHEPQPGQFDFSGRRD-LVRFIKEVQAQGLYVCLRIGPFIEGEWG 127 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~y-------v~Wn~hEp~~G~~df~g~~d-l~~fl~~a~~~GL~Vilr~GPyicaEw~ 127 (807)
.+++.| .+.+|++|+..|-.= -.|.-....-..-+-...+| +.+|.+.|+++||++-+-..+ -+|.
T Consensus 81 fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW~ 154 (384)
T smart00812 81 FDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDWF 154 (384)
T ss_pred CCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHhC
Confidence 455555 556888999866431 12554332211112222456 456778899999988774443 3665
Q ss_pred CCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCCCChH-HHHHHH
Q 003612 128 YGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEKGPP-YVRWAA 206 (807)
Q Consensus 128 ~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~~~~~~-y~~~l~ 206 (807)
. |.|....+.-..+.+.+.|.++++.|+.+|...|.+ .| |-++|- +-. ++..... -++.|.
T Consensus 155 ~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~------Yg-pd~lWf-D~~-------~~~~~~~~~~~~l~ 216 (384)
T smart00812 155 N---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTR------YK-PDLLWF-DGG-------WEAPDDYWRSKEFL 216 (384)
T ss_pred C---CccccccccccccccchhHHHHHHHHHHHHHHHHhc------CC-CceEEE-eCC-------CCCccchhcHHHHH
Confidence 3 544321111112334567888887788888777763 23 345542 111 1111111 234566
Q ss_pred HHHHhcCCcc-ceEEecCCCCCccccccCCC-C-ccCCCCCCCC-CCCCCc-eeeccccccccccCC-CcccCCHHHHHH
Q 003612 207 KLAVDLQTGV-PWVMCKQDDAPDPVINACNG-R-QCGETFAGPN-SPDKPA-IWTENWTSFYQVYGD-EARIRSAEDIAY 280 (807)
Q Consensus 207 ~~~~~~g~~v-p~~~~~~~~~~~~~~~~~ng-~-~~~~~~~~~~-~~~~P~-~~~E~~~Gwf~~WG~-~~~~~~~~~~~~ 280 (807)
+++++...+. -.+.++... + .... .| + .+.+... +. ....|- .++-.-.+|+=+-++ .....+++++..
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~--~-~~~~-~g~~~~~~e~~~-p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~ 291 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWG--G-TGCK-HGGFYTDEERGA-PGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIR 291 (384)
T ss_pred HHHHHhCCCCceEEEEcccc--c-cCCC-CCCcccCcccCC-CCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHH
Confidence 6666654432 112233211 0 0000 01 0 0101110 00 001110 011111245444333 233578899988
Q ss_pred HHHHHHHhcCCeeeeEEEeeccCCcCCCCCCcccccccCCCCCCCCCCCCCchHHHHHHHHHHHhhhccc
Q 003612 281 HVALFIAKMKGSYVNYYMYHGGTNFGRTASAYVLTGYYDQAPLDEYGLLRQPKWGHLKELHSAVKLCLKP 350 (807)
Q Consensus 281 ~~~~~l~~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDy~Apl~E~G~~~t~Ky~~lr~l~~~~~~~~~~ 350 (807)
.+.++.++ |+++ -+ |- +-+.+|.+....-..|+++...++....+
T Consensus 292 ~l~~~Vsk-~Gnl---LL-----NV----------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngea 336 (384)
T smart00812 292 DLVDIVSK-GGNL---LL-----NV----------------GPKADGTIPEEEEERLLEIGKWLKVNGEA 336 (384)
T ss_pred HHhhhcCC-CceE---EE-----cc----------------CCCCCCCCCHHHHHHHHHHHHHHHhCCce
Confidence 88888888 6642 22 11 34467887777778899999998875443
No 72
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=80.08 E-value=3.8 Score=45.01 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=50.5
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCC-CCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQ-PGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
...+..++.++++|+.|+..=.+.+-..++... -+.|.|+-. -|...+++..++.|++|++..-|+|+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 377888999999999996664444443333322 134554422 3899999999999999999999988643
No 73
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=79.62 E-value=6.9 Score=45.86 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=41.6
Q ss_pred hhcHH---HHHHHHHHcCCCEEEEc-ccCCc-----CCCCCCe-e-------------eccCchhHHHHHHHHHHcCcEE
Q 003612 58 PQMWP---RLIAKAKEGGLDVVQTL-VFWNL-----HEPQPGQ-F-------------DFSGRRDLVRFIKEVQAQGLYV 114 (807)
Q Consensus 58 ~~~W~---~~l~k~ka~G~N~V~~y-v~Wn~-----hEp~~G~-~-------------df~g~~dl~~fl~~a~~~GL~V 114 (807)
.+.|+ +.|.-+|++|+++|-+- ++-+. |--.+-- | .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35564 66777899999999874 33221 2111111 1 2445579999999999999999
Q ss_pred EEee
Q 003612 115 CLRI 118 (807)
Q Consensus 115 ilr~ 118 (807)
|+..
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9975
No 74
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.93 E-value=3.7 Score=48.96 Aligned_cols=54 Identities=20% Similarity=0.396 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEE-ccc-------CCc-----CCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQT-LVF-------WNL-----HEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+.|.-+|++|+|+|.. .|+ |.+ ..|.+ .|....||.+|++.|+++||.|||..
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788999999999986 332 322 11211 25666799999999999999999974
No 75
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=78.74 E-value=6 Score=43.56 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=54.3
Q ss_pred CCCChhcHHHHHHHHHHcCCC--EEEEcccCCcCCCCCCeeeccC--chhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 54 PRSTPQMWPRLIAKAKEGGLD--VVQTLVFWNLHEPQPGQFDFSG--RRDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 54 ~r~~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
...+.+..++.++++++.|+. +|-+-+.|- ..-|.|.|+- --|...+++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 346888999999999999964 666666663 3456666543 34899999999999999999999999754
No 76
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=78.36 E-value=11 Score=37.74 Aligned_cols=124 Identities=16% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCcccc
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFR 144 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R 144 (807)
|+.++++|+..|+............ ..+++.+.++++++||.|+.--.+.. |.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~-----------~~~--~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN-----------FWS--PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES-----------SSC--TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc-----------ccc--cccccc
Confidence 6789999999999976533222211 34589999999999999764221111 000 111133
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccc--ccccccc--cccCCCChHHHHHHHHHHHhcCCcc
Q 003612 145 SDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIE--NEYGMVE--HSFLEKGPPYVRWAAKLAVDLQTGV 216 (807)
Q Consensus 145 ~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~v 216 (807)
+.+++ .+...+.+++.+...+. + |...+.+... +...... ..+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 34444 66666788888888774 2 5566666644 2221110 000 022346677777787778653
No 77
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=78.30 E-value=4.9 Score=49.58 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=42.9
Q ss_pred hcHHHHHHHHHHcCCCEEEEc-cc-------CCcCCCC---CCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 59 QMWPRLIAKAKEGGLDVVQTL-VF-------WNLHEPQ---PGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~y-v~-------Wn~hEp~---~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+.|++.|..+|++|+|+|..- |+ |.++-.. + .-.|....||.+|++.|+++||.|||..
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 457888999999999999873 21 3322110 0 1135566799999999999999999874
No 78
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.04 E-value=17 Score=38.97 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=73.7
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE-eeCCcccccccCCCCCccccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL-RIGPFIEGEWGYGGLPFWLHD 137 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil-r~GPyicaEw~~GG~P~Wl~~ 137 (807)
..|++.++.++++|+..|++.+. ..|+ .....+|+ ..++..+.+.++++||.|.. .++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 57999999999999999999632 2221 01122333 24689999999999999863 332 11000
Q ss_pred CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccc--cccCCCChHHHHHHHHHHHhcCCc
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVE--HSFLEKGPPYVRWAAKLAVDLQTG 215 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 215 (807)
.+.+.|+...+...+.+++++...+. + |.+.|-+--...+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~~--l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQD--L----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 12234555555555667777776663 2 44555432100000000 000 01124677778888888876
Q ss_pred c
Q 003612 216 V 216 (807)
Q Consensus 216 v 216 (807)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 4
No 79
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=77.88 E-value=19 Score=38.62 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=39.3
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHc-CcEEEE
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQ-GLYVCL 116 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~-GL~Vil 116 (807)
..|++.|+.+|++|++.|++.+........+ .....+++++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEE
Confidence 7799999999999999999976432111111 11346799999999999 766655
No 80
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=77.80 E-value=4 Score=43.62 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=39.6
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
+...++-|+.+|++||++|++. .|..+.+- .+..++|+.|++.|++|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiS---------dGti~l~~-~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEIS---------DGTIDLPE-EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS---H-HHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEec---------CCceeCCH-HHHHHHHHHHHHCCCEEeeccc
Confidence 6778999999999999999996 45555442 3578999999999999999998
No 81
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=77.04 E-value=4.2 Score=47.65 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=74.5
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCC---CeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQP---GQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWL 135 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~---G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl 135 (807)
..++++++.||++|++.-|..|.|+-.=|.- +.-+-.|..=...+|+...++||...+-.= -|| +|.||
T Consensus 91 h~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-----HwD---lPq~L 162 (524)
T KOG0626|consen 91 HRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-----HWD---LPQAL 162 (524)
T ss_pred hhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-----cCC---CCHHH
Confidence 3579999999999999999999999877752 457888877778899999999999776442 354 89999
Q ss_pred cc-CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccccc
Q 003612 136 HD-VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYG 188 (807)
Q Consensus 136 ~~-~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg 188 (807)
.. ..+- -++...+..++|.+-..+.+ |.-|-.|=-=||.-
T Consensus 163 eDeYgGw----Ln~~ivedF~~yA~~CF~~f---------GDrVK~WiT~NEP~ 203 (524)
T KOG0626|consen 163 EDEYGGW----LNPEIVEDFRDYADLCFQEF---------GDRVKHWITFNEPN 203 (524)
T ss_pred HHHhccc----cCHHHHHHHHHHHHHHHHHh---------cccceeeEEecccc
Confidence 75 4442 23334444444544444333 23344455556554
No 82
>PRK12313 glycogen branching enzyme; Provisional
Probab=75.35 E-value=6 Score=48.12 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEE-ccc-------CCc-----CCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 65 IAKAKEGGLDVVQT-LVF-------WNL-----HEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 65 l~k~ka~G~N~V~~-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
|.-+|++|+|+|.. .|+ |.+ ..+.| .|....||.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999995 442 321 11111 36667899999999999999999973
No 83
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.20 E-value=67 Score=34.23 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=68.9
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE-eeCCcccccccCCCCCccccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL-RIGPFIEGEWGYGGLPFWLHD 137 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil-r~GPyicaEw~~GG~P~Wl~~ 137 (807)
..|++.|+.++++|++.|++..... |+-.+ +++ ..+++++-++++++||.|+. .++ .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~-~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRP-HAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCc-ccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc-
Confidence 3599999999999999999842111 11011 122 24688999999999999864 222 123332221
Q ss_pred CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEecccccccc--ccccccCCCChHHHHHHHHHHHhcCCc
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYG--MVEHSFLEKGPPYVRWAAKLAVDLQTG 215 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg--~~~~~~~~~~~~y~~~l~~~~~~~g~~ 215 (807)
..++.-.++..+.+++.+...+. + |.+.|.+-....-. .....+ ..-.+.++.|.+.+++.|+.
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~~--l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAKE--M----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMD 144 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHH--h----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCE
Confidence 12333344444455555555542 2 44454442211100 000000 01224677778888887765
Q ss_pred c
Q 003612 216 V 216 (807)
Q Consensus 216 v 216 (807)
+
T Consensus 145 l 145 (275)
T PRK09856 145 L 145 (275)
T ss_pred E
Confidence 3
No 84
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=74.37 E-value=6.4 Score=47.47 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=42.6
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEc-cc-------CCcC-----CCCCCeeeccCchhHHHHHHHHHHcCcEEEEe
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTL-VF-------WNLH-----EPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~y-v~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
..+.-.+.|.-+|+||+++|+.- |. |.+- -|.. .|..--||.+||+.|+++||-|||.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 45666788999999999999973 21 4331 1110 2444469999999999999999995
No 85
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=73.50 E-value=7.8 Score=46.37 Aligned_cols=57 Identities=16% Similarity=0.348 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHcCCCEEEEcccCCcCCCCC-Ceee----------ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 60 MWPRLIAKAKEGGLDVVQTLVFWNLHEPQP-GQFD----------FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 60 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~d----------f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
-+.++|.-+|++|+++|-+-=++. .|.. .-|| |....|+.+|++.|+++||+|||..
T Consensus 34 gi~~~ldyl~~lGv~~i~l~P~~~--~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 34 GVTQRLDYLQKLGVDAIWLTPFYV--SPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHhhHHHHhCCCCEEEECCCCC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356889999999999998733221 1111 1232 4556799999999999999999875
No 86
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=72.80 E-value=67 Score=33.87 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 60 MWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 60 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
.+++.+++++++|++.|+...++ ..+++.+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 58999999999999999985322 13588999999999999874
No 87
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=71.76 E-value=13 Score=39.65 Aligned_cols=53 Identities=17% Similarity=0.365 Sum_probs=44.0
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
.....++-++.+|.+||++|++. .|..+++- -+..++|+.++++||+|+-..|
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEiS---------~G~~~i~~-~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEIS---------DGSMEISL-EERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEEc---------CCccCCCH-HHHHHHHHHHHhCCCeEecccc
Confidence 34667788889999999999986 56666653 4688999999999999999888
No 88
>PRK10785 maltodextrin glucosidase; Provisional
Probab=71.68 E-value=8 Score=46.73 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCEEEE-cccCC--cCCCCCCee-----eccCchhHHHHHHHHHHcCcEEEEee
Q 003612 61 WPRLIAKAKEGGLDVVQT-LVFWN--LHEPQPGQF-----DFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 61 W~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
..+.|.-+|++|+|+|-+ +||=+ .|--...-| .|....||.+|++.|++.||+|||..
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 367788899999999987 55421 121111111 15566799999999999999999864
No 89
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=71.34 E-value=6.8 Score=46.74 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=42.6
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeee----------ccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFD----------FSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d----------f~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
-.-+.+.|.-+|++|+|+|-+-=+....+ ....|+ |....||.+|++.|+++||+|||..=
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQ-KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCC-CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34467888999999999998732221110 001232 45667999999999999999999753
No 90
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=71.03 E-value=7.7 Score=46.92 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCEEEE-ccc---------------CCcC-----CCCCCeee----cc--CchhHHHHHHHHHHcCcEEE
Q 003612 63 RLIAKAKEGGLDVVQT-LVF---------------WNLH-----EPQPGQFD----FS--GRRDLVRFIKEVQAQGLYVC 115 (807)
Q Consensus 63 ~~l~k~ka~G~N~V~~-yv~---------------Wn~h-----Ep~~G~~d----f~--g~~dl~~fl~~a~~~GL~Vi 115 (807)
+.|.-+|++|+|+|.. +|+ |.+. .|.+ .|- +. ...|+.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999987 332 3221 1110 010 10 12689999999999999999
Q ss_pred Eee
Q 003612 116 LRI 118 (807)
Q Consensus 116 lr~ 118 (807)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 964
No 91
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=70.61 E-value=18 Score=44.26 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=69.2
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcc---------------cCCcCCCCCCeeeccCchhHHH-HHHHHHHcCcEEEEeeCCc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLV---------------FWNLHEPQPGQFDFSGRRDLVR-FIKEVQAQGLYVCLRIGPF 121 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv---------------~Wn~hEp~~G~~df~g~~dl~~-fl~~a~~~GL~Vilr~GPy 121 (807)
.+.....|+.+|++|+|||-.-+ +| -|= ||+-|. +++ ...++.+.|+.|-.|.+||
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~-----f~~~aw~l~~r~~v~v~AWmp~~ 404 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADL-----FNRVAWQLRTRAGVNVYAWMPVL 404 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCC-----cCHHHHHHHHhhCCEEEEeccce
Confidence 36678999999999999996544 45 222 333221 122 3355899999999999999
Q ss_pred ccc---------cccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccc
Q 003612 122 IEG---------EWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEY 187 (807)
Q Consensus 122 ica---------Ew~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEy 187 (807)
--. +++..+-|.... |+-..| -.+|..++++|++.|..-|+++ .+|=++|..-+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 405 SFDLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred eeccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 532 111111121111 110122 4578899999999999999963 355566655543
No 92
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=70.56 E-value=9.9 Score=36.79 Aligned_cols=52 Identities=29% Similarity=0.515 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHcCcEEEEeeCCcccccc-cCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhc
Q 003612 98 RDLVRFIKEVQAQGLYVCLRIGPFIEGEW-GYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAA 168 (807)
Q Consensus 98 ~dl~~fl~~a~~~GL~Vilr~GPyicaEw-~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~ 168 (807)
.||..||++|++.|+.|++-.-| |++.| ++-|+| .+..++++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHHC
Confidence 58999999999999999876655 67776 343443 244567888888888743
No 93
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=70.38 E-value=29 Score=39.88 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=71.6
Q ss_pred eeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCC----CeeeccCc---hhHHHHHHHHHHcCcEEEEeeCCccc
Q 003612 51 IHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQP----GQFDFSGR---RDLVRFIKEVQAQGLYVCLRIGPFIE 123 (807)
Q Consensus 51 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~---~dl~~fl~~a~~~GL~Vilr~GPyic 123 (807)
.+|+.++.+...+.+++++++|++.+.+--=|....... |.|--+-. .-|..+++.+++.||+.=|+..|-+.
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 457778999999999999999999988887786542221 33321100 12999999999999999999988765
Q ss_pred ccc--cCCCCCcccccCCCcc---ccCC---ChhhHHHHHHHHHHHHH-HHHhcc
Q 003612 124 GEW--GYGGLPFWLHDVPGIV---FRSD---NEPFKFHMKRYATMIVN-MMKAAR 169 (807)
Q Consensus 124 aEw--~~GG~P~Wl~~~p~~~---~R~~---d~~~~~~~~~~~~~i~~-~l~~~~ 169 (807)
+.= -+-..|.|+...++.. -|.. |. -.++|.+|+...+. .+++.+
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~-~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDL-SNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-T-TSHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcC-CCHHHHHHHHHHHHHHHHhcC
Confidence 432 1224799997655421 1211 11 13556666655444 445433
No 94
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.16 E-value=10 Score=46.46 Aligned_cols=59 Identities=10% Similarity=0.154 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCEEEE-cccCCcCCC-----------------CCCe-----eeccCchhHHHHHHHHHHcCcEEEEe
Q 003612 61 WPRLIAKAKEGGLDVVQT-LVFWNLHEP-----------------QPGQ-----FDFSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 61 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp-----------------~~G~-----~df~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
+.+.|.-+|++|+|+|-+ .++=+.|.. -+-. -.|....|+..|++.|+++||+||+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567888999999999986 443232221 1111 12555679999999999999999997
Q ss_pred eC
Q 003612 118 IG 119 (807)
Q Consensus 118 ~G 119 (807)
.=
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 95
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=70.12 E-value=10 Score=45.20 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=42.1
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeee----------ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFD----------FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d----------f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
-.-+.+.|.-+|++|+|+|-+-=+..... ....|| |....|+.++++.|+++||+|||..
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34567889999999999998732211100 011222 4566799999999999999999964
No 96
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=69.48 E-value=4.9 Score=40.51 Aligned_cols=48 Identities=23% Similarity=0.512 Sum_probs=30.8
Q ss_pred EEeeCCCceEEEEEcCeeeeeccccccCCCCCCc-----ceeeccC---cccccccccEEEEE
Q 003612 617 AINLISMGKGEAWVNGQSIGRYWVSFLTPQGTPS-----QSWYHIP---RSFLKPTGNLLVLL 671 (807)
Q Consensus 617 fLd~~g~gKG~v~VNG~nlGRYW~~~~~~~gGPQ-----qtlYhVP---~~~Lk~g~N~IvIf 671 (807)
.|..++.|+=.+||||+.+|+-- + .|. .++|+.- .++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~--l-----~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP--L-----APGWTDYDKRVYYQTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE---------------BTTEEEEEEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCc--c-----ccccccCCCceEEEEEeChHHhCCCCCEEEEE
Confidence 46677778889999999999743 2 232 2222232 78999999999886
No 97
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=69.06 E-value=9.4 Score=42.31 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=51.1
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCC--eeeccCch--hHHHHHHHHHHcCcEEEEeeCCccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPG--QFDFSGRR--DLVRFIKEVQAQGLYVCLRIGPFIE 123 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~--dl~~fl~~a~~~GL~Vilr~GPyic 123 (807)
..+..++.++++++.||..=.+.+-|.+.. ..+ .|+|+-.+ |...+++..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 677789999999999888766666655443 234 66665433 8999999999999999998878774
No 98
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=68.84 E-value=6 Score=35.24 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=27.9
Q ss_pred cccCCceEecccccc-cccccccc----C-CCChHHHHHHHHH---HHhcCCccceEE
Q 003612 172 ASQGGPIILSQIENE-YGMVEHSF----L-EKGPPYVRWAAKL---AVDLQTGVPWVM 220 (807)
Q Consensus 172 ~~~ggpII~~QiENE-yg~~~~~~----~-~~~~~y~~~l~~~---~~~~g~~vp~~~ 220 (807)
+++.+.|.+|+|-|| .+.....+ + .....|.+||+++ +|+.+.+.|++.
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 356789999999999 66322111 1 1245667777665 566677888654
No 99
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=68.19 E-value=13 Score=31.48 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.7
Q ss_pred CcceEEEEEECCEEEEEEecccCC
Q 003612 482 SLGHVLHAFINGEFVGSAHGKHSD 505 (807)
Q Consensus 482 ~~~D~a~Vfvng~~vG~~~~~~~~ 505 (807)
...|.|.||++++++|++.+...+
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 568999999999999999986544
No 100
>PRK09989 hypothetical protein; Provisional
Probab=68.02 E-value=57 Score=34.62 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 60 MWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 60 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
-..++|++++++||..|++..+|. .+.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999953321 2367888889999999875
No 101
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=67.82 E-value=11 Score=42.23 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=56.6
Q ss_pred eeCCCC---ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCc--hhH--HHHHHHHHHcCcEEEEeeCCccc
Q 003612 51 IHYPRS---TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGR--RDL--VRFIKEVQAQGLYVCLRIGPFIE 123 (807)
Q Consensus 51 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl--~~fl~~a~~~GL~Vilr~GPyic 123 (807)
.|..|. +.+..++.++++++.||..=.+.+-+.++.. -+.|.|+.. -|. ..+++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455553 6788899999999999987666665554433 356666543 377 99999999999999999999998
Q ss_pred cc
Q 003612 124 GE 125 (807)
Q Consensus 124 aE 125 (807)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 54
No 102
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=67.13 E-value=79 Score=33.98 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=50.9
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCee--eccC--chhHHHHHHHHHHcCcEEEEeeCCcc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQF--DFSG--RRDLVRFIKEVQAQGLYVCLRIGPFI 122 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--df~g--~~dl~~fl~~a~~~GL~Vilr~GPyi 122 (807)
..+..++.++++++.||..=.+.+-+.+... -+.| +|+- --|...+++.+++.|++|++..-|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6788899999999999986666666555543 3555 4432 24899999999999999999998877
No 103
>PRK01060 endonuclease IV; Provisional
Probab=66.93 E-value=98 Score=33.08 Aligned_cols=83 Identities=10% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEE---EEeeCCcccccccCCCCCccccc
Q 003612 61 WPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYV---CLRIGPFIEGEWGYGGLPFWLHD 137 (807)
Q Consensus 61 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~V---ilr~GPyicaEw~~GG~P~Wl~~ 137 (807)
+++.++.++++|++.|++.+.-. +.-.++.++ ..++.++-++++++||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p-~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNP-QQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC-CCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 88999999999999999975311 111111111 124788889999999984 33 33432 1
Q ss_pred CCCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
.+-+.|+...+...+.+++.+...+
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~ 99 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA 99 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1233566666666666777766655
No 104
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=66.75 E-value=86 Score=33.26 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 61 WPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 61 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
+++.|++++++|++.|++.. |. ..|++.+.++++++||.|..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 78899999999999999931 11 14689999999999999864
No 105
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=66.69 E-value=75 Score=36.32 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=52.5
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEc----ccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE-eeCCcccccccCCCC
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTL----VFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL-RIGPFIEGEWGYGGL 131 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil-r~GPyicaEw~~GG~ 131 (807)
++....+++++++++|+..|+.. ++|..-.. .-..+++++-++++++||.|.. -++-+..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~-------e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~-------- 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQ-------ERDQIVRRFKKALDETGLKVPMVTTNLFSH-------- 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChh-------HHHHHHHHHHHHHHHhCCeEEEeeccccCC--------
Confidence 44567799999999999999964 12211110 0123568899999999999864 3321111
Q ss_pred CcccccCCCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 132 PFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 132 P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
|.|.. . .+-+.|+...+.--+++++.+..-+
T Consensus 95 ~~~~~--g--~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 95 PVFKD--G--GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ccccC--C--CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11211 1 1334566555554445566666555
No 106
>PLN02361 alpha-amylase
Probab=66.39 E-value=18 Score=41.49 Aligned_cols=57 Identities=9% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCcCCC---CCCe-ee----ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWNLHEP---QPGQ-FD----FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~-~d----f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+.|.-++++|+++|-+.=+.....+ .|.. |+ |....||.++++.|+++||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 56677889999999988544322111 1221 21 4556799999999999999999864
No 107
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.09 E-value=13 Score=41.16 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=50.6
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC-----CCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP-----QPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
..+..++.++++++.||..=.+.+-+.++.. .-|.|+|+-. -|...+++..++.|++|++..=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccC
Confidence 5678899999999999876555554333332 2245555432 389999999999999999998888863
No 108
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=66.04 E-value=49 Score=39.21 Aligned_cols=277 Identities=17% Similarity=0.277 Sum_probs=126.1
Q ss_pred EEEEEEEEEee------CCCCChhcHHHHHHHH---HHcCCCEEEEccc--------CCcCCCCCCeee---ccCch-hH
Q 003612 42 HRKILFSGSIH------YPRSTPQMWPRLIAKA---KEGGLDVVQTLVF--------WNLHEPQPGQFD---FSGRR-DL 100 (807)
Q Consensus 42 ~~~~~~~g~~h------y~r~~~~~W~~~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G~~d---f~g~~-dl 100 (807)
+++.=+||++- ..+.+++.=++.|+.+ +-+|+|.+|+.|- +.+-+ .|+-|+ |+-.. |.
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 34444777653 1224443333333333 5589999999984 33322 233222 33322 32
Q ss_pred ---HHHHHHHHHc--CcEEEEeeCCcccccccCCCCCcccccCCCc----cccC-CChhhHHHHHHHHHHHHHHHHhccc
Q 003612 101 ---VRFIKEVQAQ--GLYVCLRIGPFIEGEWGYGGLPFWLHDVPGI----VFRS-DNEPFKFHMKRYATMIVNMMKAARL 170 (807)
Q Consensus 101 ---~~fl~~a~~~--GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~----~~R~-~d~~~~~~~~~~~~~i~~~l~~~~l 170 (807)
--+|+.|.+. +|+++.-| |. .|+|++....+ .++. .++.|.+++..|+.+.++..++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 3477777663 57777655 54 79999753332 2342 2356777777777777777763
Q ss_pred ccccCCceEeccccccccccc---cccC-----C-CChHHHH-HHHHHHHhcCC--ccceEEecCC--CCC---ccccc-
Q 003612 171 YASQGGPIILSQIENEYGMVE---HSFL-----E-KGPPYVR-WAAKLAVDLQT--GVPWVMCKQD--DAP---DPVIN- 232 (807)
Q Consensus 171 ~~~~ggpII~~QiENEyg~~~---~~~~-----~-~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~---~~~~~- 232 (807)
+|=+|-++-+.||..... ..|. + ..+++++ .|...+++.|+ ++-++..|.. ..+ ..++.
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 466999999999987421 1121 1 1245665 47888888876 7776665521 122 11221
Q ss_pred -----cCC--CCccC--CCCCC------CCCCCCCceeeccccccccccCCCc---ccCCHHHHHHHHHHHHHhcCCeee
Q 003612 233 -----ACN--GRQCG--ETFAG------PNSPDKPAIWTENWTSFYQVYGDEA---RIRSAEDIAYHVALFIAKMKGSYV 294 (807)
Q Consensus 233 -----~~n--g~~~~--~~~~~------~~~~~~P~~~~E~~~Gwf~~WG~~~---~~~~~~~~~~~~~~~l~~~g~s~~ 294 (807)
.+. ++++- +.... ...|++.++.||-..|.. .|+... .-..++..+..+..-|.. +.+
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn-~~~-- 372 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNN-WVS-- 372 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHT-TEE--
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHh-hce--
Confidence 111 22321 11100 235788899999876531 122111 001123344444444555 322
Q ss_pred eEEEe------eccCCcCCC-CCCcccccccCCCCCCCCCCCCCchHHHHHHHHHHHh
Q 003612 295 NYYMY------HGGTNFGRT-ASAYVLTGYYDQAPLDEYGLLRQPKWGHLKELHSAVK 345 (807)
Q Consensus 295 n~YM~------hGGTNfG~~-~g~~~~TSYDy~Apl~E~G~~~t~Ky~~lr~l~~~~~ 345 (807)
++-++ .||-|++.- ..+.++..=+. +|. ..+|.|+.|....+|++
T Consensus 373 gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~----~~~--~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 373 GWIDWNLALDENGGPNWVGNFCDAPIIVDSDT----GEF--YKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp EEEEEESEBETTS---TT---B--SEEEEGGG----TEE--EE-HHHHHHHHHHTTS-
T ss_pred eeeeeeeecCCCCCCcccCCCCCceeEEEcCC----CeE--EEcHHHHHHHHHhcccC
Confidence 33232 488887532 12222111111 121 24789999988777665
No 109
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=65.92 E-value=1.1e+02 Score=33.24 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=79.1
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
.-+..+.+|+.++.-+. .||+|- +.-.-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 56888999999999887 999992 122338899999999999999854 332
Q ss_pred cCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccC-CCChHHHHHHHHHHHhcCCc
Q 003612 137 DVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFL-EKGPPYVRWAAKLAVDLQTG 215 (807)
Q Consensus 137 ~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~-~~~~~y~~~l~~~~~~~g~~ 215 (807)
. ++ . ..+++ .++..+.+ +..-..|..+-|.||.=..+. .- ..--+|+...+.+.++.|.+
T Consensus 111 d--d~-------~--~~~~~---til~ay~~----~~~~d~v~~v~VGnEal~r~~-~tasql~~~I~~vrsav~~agy~ 171 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYLP----YNGWDDVTTVTVGNEALNRND-LTASQLIEYIDDVRSAVKEAGYD 171 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHhc----cCCCCceEEEEechhhhhcCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11 1 11221 33333321 223357889999999643211 10 01237899999999999999
Q ss_pred cceEEecCC
Q 003612 216 VPWVMCKQD 224 (807)
Q Consensus 216 vp~~~~~~~ 224 (807)
+|..+.++.
T Consensus 172 gpV~T~dsw 180 (305)
T COG5309 172 GPVTTVDSW 180 (305)
T ss_pred Cceeecccc
Confidence 998887753
No 110
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=65.79 E-value=12 Score=41.65 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=58.0
Q ss_pred EEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCe-eeccCchhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 46 LFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQ-FDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 46 ~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~df~g~~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
.+|=++.+.|.+.+.=..-|++|...||..|-|. +|.|.+.. --|.- +..+++.|+++||+||+...|-|--
T Consensus 3 ~~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFts----l~~~~~~~~~~~~~---~~ell~~Anklg~~vivDvnPsil~ 75 (360)
T COG3589 3 MLGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFTS----LLIPEEDAELYFHR---FKELLKEANKLGLRVIVDVNPSILK 75 (360)
T ss_pred ceeEEeccCCCcchhHHHHHHHHHHcCccceeee----cccCCchHHHHHHH---HHHHHHHHHhcCcEEEEEcCHHHHh
Confidence 3566777778898888899999999999998886 67777531 12333 7889999999999999999887655
Q ss_pred c
Q 003612 125 E 125 (807)
Q Consensus 125 E 125 (807)
|
T Consensus 76 ~ 76 (360)
T COG3589 76 E 76 (360)
T ss_pred h
Confidence 5
No 111
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=65.70 E-value=15 Score=45.86 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=46.5
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCee----------eccCchhHHHHHHHHHHcCcEEEEeeCC
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQF----------DFSGRRDLVRFIKEVQAQGLYVCLRIGP 120 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~----------df~g~~dl~~fl~~a~~~GL~Vilr~GP 120 (807)
.+-+.|.+.|.-++++|+++|-+-=++.......--| .|.+..|+.+|++.|+++||.||+..=|
T Consensus 13 ~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 13 FTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3556789999999999999997743332110000011 2567789999999999999999997543
No 112
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=65.17 E-value=45 Score=35.79 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=71.8
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE-eeCCcccccccCCCCCccccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL-RIGPFIEGEWGYGGLPFWLHD 137 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil-r~GPyicaEw~~GG~P~Wl~~ 137 (807)
..|.+.++.++++|+..|+..+. ..++ ....++++ ..+++.+.++++++||.|.. .++.. ..++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC-----
Confidence 36999999999999999999632 1111 01112333 23588999999999999863 33210 0011
Q ss_pred CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCCC-------ChHHHHHHHHHHH
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEK-------GPPYVRWAAKLAV 210 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~~~-------~~~y~~~l~~~~~ 210 (807)
+-+.|+.-.+...+.+++.+...+. + |.++|.+. |.. ..++.. -.+.++.|.+.++
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~~--l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQD--L----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHH--c----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 1123455555666677777777663 2 55666542 110 001111 1245677777787
Q ss_pred hcCCcc
Q 003612 211 DLQTGV 216 (807)
Q Consensus 211 ~~g~~v 216 (807)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 777754
No 113
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=64.78 E-value=13 Score=41.67 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=55.3
Q ss_pred eeCCCC---ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 51 IHYPRS---TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 51 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
+|..|. ..+..++.++++++.||..=.+.+-+.+. ...+.|+|+-. -|...+++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 455553 67788999999999999866665554322 24455666533 3899999999999999999999999854
No 114
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=64.50 E-value=16 Score=45.94 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=47.5
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCe---e---e-------ccCchhHHHHHHHHHHcCcEEEEeeCCcc
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQ---F---D-------FSGRRDLVRFIKEVQAQGLYVCLRIGPFI 122 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~---~---d-------f~g~~dl~~fl~~a~~~GL~Vilr~GPyi 122 (807)
.+-+.+.+.|.-++++|+|+|-+.=++ +..+|. | | |.+..|+.+|++.|+++||.||+..=|-=
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 456779999999999999999874332 222221 2 2 45678999999999999999999765433
No 115
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=64.38 E-value=73 Score=35.77 Aligned_cols=137 Identities=16% Similarity=0.271 Sum_probs=85.0
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHH---HHcCcEEEEeeCCcccccccCCCCC
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEV---QAQGLYVCLRIGPFIEGEWGYGGLP 132 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a---~~~GL~Vilr~GPyicaEw~~GG~P 132 (807)
..|+.++.-.+.+|+.|++.--.|-.|- .|..=|++-++.. .+.+|...|. |.|-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 4788899999999999999999996664 3433355555443 3445555542 22333311
Q ss_pred cccccCCCccccCCChhhH--HHHHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCCCChHHHHHHHHHHH
Q 003612 133 FWLHDVPGIVFRSDNEPFK--FHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEKGPPYVRWAAKLAV 210 (807)
Q Consensus 133 ~Wl~~~p~~~~R~~d~~~~--~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 210 (807)
.|-.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.+. +.-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 233222222111 1222 235667788888888766665688899986322111 245689999999999
Q ss_pred hcCCccceEEe
Q 003612 211 DLQTGVPWVMC 221 (807)
Q Consensus 211 ~~g~~vp~~~~ 221 (807)
++|+.-+.+..
T Consensus 186 ~~G~~giyii~ 196 (345)
T PF14307_consen 186 EAGLPGIYIIA 196 (345)
T ss_pred HcCCCceEEEE
Confidence 99998665543
No 116
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=63.47 E-value=15 Score=49.10 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=47.8
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCC---eee----------ccCchhHHHHHHHHHHcCcEEEEeeCC
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPG---QFD----------FSGRRDLVRFIKEVQAQGLYVCLRIGP 120 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G---~~d----------f~g~~dl~~fl~~a~~~GL~Vilr~GP 120 (807)
.+-+.|.+.|.-+|++|+|+|-+-=++. ..+| -|| |.+..|+.+|++.|+++||.||+..=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~---a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILK---ARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcC---CCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3667899999999999999998753332 2222 222 567789999999999999999997543
No 117
>PLN00196 alpha-amylase; Provisional
Probab=63.32 E-value=55 Score=38.00 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEcccCCc---CCCCCCe-ee-----ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWNL---HEPQPGQ-FD-----FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~-~d-----f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+.|.-+|++|+++|-+.=+... |--.+.. |+ |....||.++++.|++.||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57788899999999988543322 2112211 22 3344699999999999999999874
No 118
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=62.12 E-value=37 Score=34.15 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=40.5
Q ss_pred ceeEeCCcceEEEEEECCEEEEEEe----cccCCcce---EEEeeeeecCCccEEEEEEecCCcc---ccc---cccccc
Q 003612 476 SVLKVSSLGHVLHAFINGEFVGSAH----GKHSDKSF---TLEKMVHLINGTNNVSLLSVMVGLP---DSG---AYLERR 542 (807)
Q Consensus 476 ~~L~i~~~~D~a~Vfvng~~vG~~~----~~~~~~~~---~~~~~~~l~~g~~~L~ILvEn~Grv---N~G---~~~~~~ 542 (807)
..|.|... .+-.+||||+.||.-. ...-.+.. ++.+.--|+.|.|+|.++|-+.... .++ ......
T Consensus 6 A~l~isa~-g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~~~~~~~~~~~~~~~~~ 84 (172)
T PF08531_consen 6 ARLYISAL-GRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWYNGRIGFGGFPRARYGG 84 (172)
T ss_dssp -EEEEEEE-SEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S----------BTTB--
T ss_pred EEEEEEeC-eeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCccccccccccccccccCC
Confidence 34554432 3667999999998744 11101111 2222223778999999999764433 211 111124
Q ss_pred ccceeE-EEE---CCcccccccCCCcceEe
Q 003612 543 VAGLRN-VSI---QGAKELKDFSSFSWGYQ 568 (807)
Q Consensus 543 ~KGI~g-V~l---~g~~~~~~L~~~~W~~~ 568 (807)
..+++. +.+ +|....+ .++.+|+..
T Consensus 85 ~~~l~~~l~i~~~DG~~~~i-~TD~sW~~~ 113 (172)
T PF08531_consen 85 RPALLAQLEITYADGTTEVI-VTDESWKCS 113 (172)
T ss_dssp --EEEEEEEE---TTEEEE--E-STTSEEE
T ss_pred CceeEEEEEEEecCCCEEEe-ccCCCeeee
Confidence 456665 555 4541111 345678743
No 119
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=61.50 E-value=16 Score=40.50 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=54.4
Q ss_pred eeCCCC---ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 51 IHYPRS---TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 51 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
+|..|. ..+..++.++++++.+|..=.+.+-+.+.. .-+.|+|+-. -|..+|++..++.|++|++..=|+|...
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~ 91 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVD 91 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCC
Confidence 344553 677889999999999988655555533332 2355666432 4899999999999999999999988643
No 120
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.76 E-value=52 Score=35.73 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=59.2
Q ss_pred eEEEeCCeEEECCEEEEEEEE--EeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeecc--CchhHHHHH
Q 003612 29 NVTYDGRSLIINGHRKILFSG--SIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFS--GRRDLVRFI 104 (807)
Q Consensus 29 ~v~~~~~~f~ldG~~~~~~~g--~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~fl 104 (807)
.|.+. .+.+.+.+++++.| ++| +++.-.+.-+++|++|+..++.|.+= |+--.+.|. |..-+..+-
T Consensus 15 ~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~k----pRTs~~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 15 IVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFK----PRTSPYSFQGLGEEGLKILK 84 (266)
T ss_pred EEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeec----CCCCCCccCCcHHHHHHHHH
Confidence 45443 36777779999999 233 67888899999999999999999654 332233555 345688888
Q ss_pred HHHHHcCcEEEEee
Q 003612 105 KEVQAQGLYVCLRI 118 (807)
Q Consensus 105 ~~a~~~GL~Vilr~ 118 (807)
+.|++.||.++-.+
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999988765
No 121
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=60.47 E-value=23 Score=39.28 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=49.8
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCC---CCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEP---QPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
.+...+.++++++.||..=.+.+-+.+..- ....|+|.-. -|...+++..++.|++|++..=|+|+.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~ 99 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQ 99 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccC
Confidence 567889999999999987766665433322 1234555422 489999999999999999999888863
No 122
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=57.72 E-value=17 Score=47.58 Aligned_cols=56 Identities=27% Similarity=0.499 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEE-cccCCcCCCC---CC-----eee----------cc--CchhHHHHHHHHHHcCcEEEEee
Q 003612 63 RLIAKAKEGGLDVVQT-LVFWNLHEPQ---PG-----QFD----------FS--GRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 63 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G-----~~d----------f~--g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+.|.-+|++|+|+|.. .|+=...|.. .| -|| |. ...|+..+++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 4442211111 11 022 34 66799999999999999999973
No 123
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=57.71 E-value=31 Score=28.63 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=43.4
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
|....+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5567788999999999999999732 233 58887766 5678999999999988754
No 124
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=57.48 E-value=16 Score=39.42 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=43.1
Q ss_pred cccchhhhccCC---CCCCCcEEEEEEEeCCCCC-----CcceeEeCCcceEEEEEECCEEEE
Q 003612 443 RANFLLEQMNTT---KDASDYLWYNFRFKHDPSD-----SESVLKVSSLGHVLHAFINGEFVG 497 (807)
Q Consensus 443 ~~p~~mEql~qt---~d~~GYllY~t~i~~~~~~-----~~~~L~i~~~~D~a~Vfvng~~vG 497 (807)
..|.++-.++|. .|.+|.+||+.++.+..+. +...|++.++|-.|.|+|||.-+=
T Consensus 69 pvpss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~ 131 (297)
T KOG2024|consen 69 PVPSSFNDIGQDWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDAL 131 (297)
T ss_pred ccccchhccccCCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeec
Confidence 345667788775 4679999999999876532 467789999999999999987653
No 125
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=57.10 E-value=23 Score=39.64 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=54.0
Q ss_pred eeCCCC---ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccC--chhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 51 IHYPRS---TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSG--RRDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 51 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
+|..|. +.+..++.++++++.||..=.+.+-+.+.. .-+.|+|+- --|...+++..++.|++|++..=|+|+.+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~ 91 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCC
Confidence 455553 677889999999999987655555444333 234455543 23789999999999999999999998743
No 126
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=56.52 E-value=26 Score=38.29 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=48.8
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC--------CCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCcc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP--------QPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFI 122 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--------~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyi 122 (807)
+.+..++.++++++.||..=-+++-..+|.- .-+.|.|+-. -|...+++..++.|++|++..=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 6788899999999999886665554333321 2245666432 4899999999999999999886654
No 127
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=56.42 E-value=2.8 Score=50.09 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=64.0
Q ss_pred ccccccccCCCCcccccccccccccccccccCCCCCceeeecCCCCeEeEEeeeecCCCCCCCCCCCcCcccCCChHHHH
Q 003612 690 TLCGHVSDSHLPPVISWRSQNQRTLKTHKRIPGRRPKVQIRCPSGRKISKILFASYGNPNGNCENYAIGSCHSSNSRAIV 769 (807)
Q Consensus 690 ~~c~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Cp~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V 769 (807)
..|.+..++|+.++ + +.-=.|.+..++.+|..|.||...++|+.+...+|.++++...+
T Consensus 312 gl~~~pk~ghlk~~--------------h-------ts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f 370 (649)
T KOG0496|consen 312 GLLRQPKYGHLKPL--------------H-------TSYDYCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPF 370 (649)
T ss_pred hhhcCCCccccccc--------------h-------hhhhhcCccccccCcccccccchhhHHHHHHhcCCCCCCCcccc
Confidence 57888888887443 1 11224667888888999999998888999999999999999999
Q ss_pred HHHhCCCceeEEeecCCCcc
Q 003612 770 EKACLGKRSCTVPVWTEKFY 789 (807)
Q Consensus 770 ~~~C~Gk~~C~i~a~~~~Fg 789 (807)
.+.|-.+..|+|....+.++
T Consensus 371 ~~~~y~~~~~slsilpdck~ 390 (649)
T KOG0496|consen 371 NKPKYRLPPWSLSILPDCKT 390 (649)
T ss_pred CCCccccCceeEEechhhcc
Confidence 99999999999988765543
No 128
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=56.40 E-value=42 Score=36.62 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=69.3
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeecc---CchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCC
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFS---GRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLP 132 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P 132 (807)
..-+..++-+.-+.++|+..|-+-.-|...+ ....+||+ ...||.++++-|++.|+.|+|+.- |..||-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~------~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH------SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE------CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEEe------CCcchhh
Confidence 3667888999999999999999988898732 23457775 347999999999999999998752 2222111
Q ss_pred ccccc-------------CCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEe
Q 003612 133 FWLHD-------------VPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIIL 180 (807)
Q Consensus 133 ~Wl~~-------------~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~ 180 (807)
.=+.+ ..++|+=--+ .--+.+-+|+.+|++.-|+++|+..-||++.-
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~-~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~kP 161 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMD-RDDQEMVNWYEDILEDAAEYKLMVNFHGATKP 161 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--S-STSHHHHHHHHHHHHHHHHTT-EEEETTS---
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCC-CCCHHHHHHHHHHHHHHHHcCcEEEecCCcCC
Confidence 10111 1111110000 11244567888999999998888877776554
No 129
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=55.73 E-value=21 Score=43.94 Aligned_cols=55 Identities=16% Similarity=0.352 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCEEEE-cccCCcCC---CCCC-----eee----------c---cCchhHHHHHHHHHHcCcEEEEee
Q 003612 64 LIAKAKEGGLDVVQT-LVFWNLHE---PQPG-----QFD----------F---SGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 64 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~~d----------f---~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.|.-+|++|+|+|.. .|+=...+ ...| -|| | ....|+.+|++.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999986 44311111 1111 121 2 124689999999999999999974
No 130
>PRK09875 putative hydrolase; Provisional
Probab=55.32 E-value=66 Score=35.41 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=59.1
Q ss_pred EEEeCCeEEECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHH
Q 003612 30 VTYDGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQA 109 (807)
Q Consensus 30 v~~~~~~f~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~ 109 (807)
+++-+.+++++..++. +......-..+.-...|+.+|++|.+||- |..| ..-.+|...+.+++++
T Consensus 8 ~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~----~g~GRd~~~l~~is~~ 72 (292)
T PRK09875 8 YTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTN----RYMGRNAQFMLDVMRE 72 (292)
T ss_pred cceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCC----CccCcCHHHHHHHHHH
Confidence 5666666776663322 11111112566777889999999999883 2222 2235799999999999
Q ss_pred cCcEEEEeeCCcccccccCCCCCcccc
Q 003612 110 QGLYVCLRIGPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 110 ~GL~Vilr~GPyicaEw~~GG~P~Wl~ 136 (807)
-|+.||.-.|-|.-.. +|.|+.
T Consensus 73 tgv~Iv~~TG~y~~~~-----~p~~~~ 94 (292)
T PRK09875 73 TGINVVACTGYYQDAF-----FPEHVA 94 (292)
T ss_pred hCCcEEEcCcCCCCcc-----CCHHHh
Confidence 9999999999886433 577776
No 131
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=54.84 E-value=20 Score=36.14 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcccccccCCceEeccccccccccccccCCCChHHHHHHHHHHHh
Q 003612 154 MKRYATMIVNMMKAARLYASQGGPIILSQIENEYGMVEHSFLEKGPPYVRWAAKLAVD 211 (807)
Q Consensus 154 ~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 211 (807)
+.+-+.+++..++. .+.++|.+ .||.|.-.-++.+..+.|.+.|..+-+.
T Consensus 101 ~~~~i~~l~~~l~~------~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq~ 150 (169)
T cd00544 101 IADEIDALLAAVRN------KPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQR 150 (169)
T ss_pred HHHHHHHHHHHHHc------CCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44445566666652 45678886 6999974333445678898877665444
No 132
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=54.81 E-value=86 Score=35.13 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=77.1
Q ss_pred eeCCCC---ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 51 IHYPRS---TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 51 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
+|..|. ..+..++..+++++.+|-.=.+++-|.++. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-- 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-- 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee--
Confidence 555553 678889999999999988666666665554 3356666543 38899999999999999999889997
Q ss_pred ccCCCCCcccccCCCccccCCChhhH-HHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 126 WGYGGLPFWLHDVPGIVFRSDNEPFK-FHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 126 w~~GG~P~Wl~~~p~~~~R~~d~~~~-~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
.|. .|- .+ +.-|.|. +.+++|+....+.+.+ . |--..|-=.||+-.
T Consensus 90 --~g~--~~~--~~-----~~~pDftnp~ar~wW~~~~~~l~~------~-Gv~~~W~DmnEp~~ 136 (332)
T cd06601 90 --YGG--GLG--SP-----GLYPDLGRPDVREWWGNQYKYLFD------I-GLEFVWQDMTTPAI 136 (332)
T ss_pred --cCc--cCC--CC-----ceeeCCCCHHHHHHHHHHHHHHHh------C-CCceeecCCCCccc
Confidence 221 110 11 1234444 4577788776655432 1 32335555677643
No 133
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=54.11 E-value=1.1e+02 Score=32.51 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCEEEEcccCCcCCCCCCee-eccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCC
Q 003612 61 WPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQF-DFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVP 139 (807)
Q Consensus 61 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~-df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p 139 (807)
..+.++.+.++|++.|+.+ ..+|..-.- +++ ..+++++.++++++||.|.+. +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 4578999999999999996 344432110 122 135888999999999987652 3432
Q ss_pred CccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 140 GIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 140 ~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
+.+.+.|+...++..+++++.+...+
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~ 94 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE 94 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12344566666666667777777655
No 134
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=53.75 E-value=22 Score=31.50 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=32.3
Q ss_pred eeEeCCcceEEEEEECCEEEEEEecccCCcceEEEeeeee-cCCccEEEEEEecCCcc
Q 003612 477 VLKVSSLGHVLHAFINGEFVGSAHGKHSDKSFTLEKMVHL-INGTNNVSLLSVMVGLP 533 (807)
Q Consensus 477 ~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILvEn~Grv 533 (807)
.|++.+-....+-||||+++|...... .+.+ .+ ..|.++|.+ +...||.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPGH---QLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCCC---eEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 445444466999999999998866432 1222 24 678888877 6666664
No 135
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=53.67 E-value=32 Score=38.90 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=45.4
Q ss_pred CCCCCceeeccccccccccCCCcccCCHHHHHHHHHHHHHhcCCeeeeEEEeeccCCcCCCCCCcccccccCCCCCCCCC
Q 003612 248 SPDKPAIWTENWTSFYQVYGDEARIRSAEDIAYHVALFIAKMKGSYVNYYMYHGGTNFGRTASAYVLTGYYDQAPLDEYG 327 (807)
Q Consensus 248 ~~~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDy~Apl~E~G 327 (807)
..++|.+++|..+| -..|+.......+..+....-.-++. |...+.|+=+ ..-.+|.=.. ..+.|+-+|
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~-Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg 354 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAH-GADGILFWQW-RQSRFGAEQF--------HGGLVDHDG 354 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHT-T-S-EEEC-S-B--SSSTTTT--------S--SB-TTS
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHH-hCCeeEeeec-cCCCCCchhh--------hcccCCccC
Confidence 47899999999998 56676555445556666555566788 8887777655 3333442211 124667778
Q ss_pred CCCCchHHHHHHHHHHHhh
Q 003612 328 LLRQPKWGHLKELHSAVKL 346 (807)
Q Consensus 328 ~~~t~Ky~~lr~l~~~~~~ 346 (807)
...+++|.+++++...|+.
T Consensus 355 ~~~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 355 REPTRRYREVAQLGRELKK 373 (374)
T ss_dssp --B-HHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHhc
Confidence 3358999999999887753
No 136
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=52.83 E-value=12 Score=37.61 Aligned_cols=53 Identities=26% Similarity=0.299 Sum_probs=26.2
Q ss_pred CCceEEEEEcCeeeeeccc-cccCC---------CCCCcceeeccCcccccccccEEEEEEecC
Q 003612 622 SMGKGEAWVNGQSIGRYWV-SFLTP---------QGTPSQSWYHIPRSFLKPTGNLLVLLEEEN 675 (807)
Q Consensus 622 g~gKG~v~VNG~nlGRYW~-~~~~~---------~gGPQqtlYhVP~~~Lk~g~N~IvIfE~~~ 675 (807)
.-++=+|.||| ..+..+. ....+ .|-.+.--+-||+..|++|+|+|.|-=..+
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34666899999 6666552 11111 144554455589999999999997644443
No 137
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=52.16 E-value=58 Score=37.31 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=41.9
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..+.|+++++.+|++||+....-+- ....+.. .-|...++.|++.|+++.+-+-
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEec
Confidence 7899999999999999998887653 1112222 2388999999999999998763
No 138
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=51.95 E-value=26 Score=44.26 Aligned_cols=21 Identities=14% Similarity=0.513 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEEee
Q 003612 98 RDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 98 ~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.++.++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999863
No 139
>PRK03705 glycogen debranching enzyme; Provisional
Probab=51.09 E-value=28 Score=42.67 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCEEEE-cccCCcCCCCC---C-----eee----------ccC-----chhHHHHHHHHHHcCcEEEEee
Q 003612 64 LIAKAKEGGLDVVQT-LVFWNLHEPQP---G-----QFD----------FSG-----RRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 64 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~~d----------f~g-----~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.|.-+|++|+|+|.. .|+=...++.. | -|| |.. ..++.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999986 33311111110 1 011 222 2579999999999999999974
No 140
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=50.91 E-value=39 Score=37.12 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=43.8
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEccc---CCcCCCCCCeee-c----cCchhHHHHHHHHHHcCcEEEEee
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVF---WNLHEPQPGQFD-F----SGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~---Wn~hEp~~G~~d-f----~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+..-+.+++.+|..|+|++-+-+= =++.-|....++ . .-..|+.-+|+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEEEE
Confidence 5677889999999999999877542 112222222221 0 112589999999999999999996
No 141
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=49.29 E-value=31 Score=44.57 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCcEEEEee
Q 003612 98 RDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 98 ~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+|.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999974
No 142
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=49.19 E-value=37 Score=39.18 Aligned_cols=69 Identities=19% Similarity=0.349 Sum_probs=48.3
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCcccccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEGEW 126 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyicaEw 126 (807)
..+...+.++.+++.|+-.=.+.+...+.. ..+.|.|+.. -|...+++.+++.|++|++..-|+|+-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 577889999999999998766666533333 3344444422 38999999999999999999999997663
No 143
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.14 E-value=1e+02 Score=33.96 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=43.8
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEccc----CCcCCCC----CCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVF----WNLHEPQ----PGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~----~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+.+..++.++.|...|+|.+..|+- +.-+ |+ +|.| | ..|+.++++.|++.||.||..+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~~~~~y--T-~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGRMRGAY--T-KEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCC-cccccCCCCc--C-HHHHHHHHHHHHHcCCEEEecC
Confidence 4688899999999999999999873 3211 22 1222 1 2589999999999999999754
No 144
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=47.07 E-value=49 Score=40.26 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=53.5
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcc---c---CCc--CCCCCCeee---------ccCchhHHHHHHHHHHcCcEEEEee-
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLV---F---WNL--HEPQPGQFD---------FSGRRDLVRFIKEVQAQGLYVCLRI- 118 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv---~---Wn~--hEp~~G~~d---------f~g~~dl~~fl~~a~~~GL~Vilr~- 118 (807)
.+..| +.++++|+++|-+-= . |.. ---.-|-|| |.-.-|++++++.|+++||+||+..
T Consensus 76 ~~~~w----dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALW----KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHH----HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 44555 468899999997632 2 432 222245566 3444699999999999999999763
Q ss_pred -------CCcccccccCCCCCcccc
Q 003612 119 -------GPFIEGEWGYGGLPFWLH 136 (807)
Q Consensus 119 -------GPyicaEw~~GG~P~Wl~ 136 (807)
-||.-|+.+.+-+|.|..
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 258888888888888873
No 145
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=46.62 E-value=21 Score=30.15 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=27.1
Q ss_pred eeEeCCcceEEEEEECCEEEEEEecccCCcceEEEeeeeecCCccEEEEEEecCCccc
Q 003612 477 VLKVSSLGHVLHAFINGEFVGSAHGKHSDKSFTLEKMVHLINGTNNVSLLSVMVGLPD 534 (807)
Q Consensus 477 ~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILvEn~GrvN 534 (807)
.|.|...-..|.|||||+++|... ..+. .++.|.++|.| +.-|...
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~ 48 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEP 48 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCee
Confidence 355555556789999999999422 1121 25567655544 4445443
No 146
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=46.61 E-value=6.7 Score=41.37 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEe
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
-...+.+.++|.+.|.+.++|....+..-.+.. .++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~---~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVI---EEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHH---HHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHH---HHHHHHHHHHhcCCcEEEEE
Confidence 567888999999999999999765544322222 45899999999999999998
No 147
>PLN02877 alpha-amylase/limit dextrinase
Probab=44.88 E-value=41 Score=42.78 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCcEEEEee
Q 003612 98 RDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 98 ~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.++.++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999974
No 148
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.86 E-value=31 Score=36.81 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=39.0
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCc-CCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNL-HEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~-hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+.+++.++.++++|..+|.+...... .++..-.+...- ..|..+.+.|+++|+.+.+.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLA-ENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHcCCEEEEec
Confidence 45677888999999999977422111 111111122211 358999999999999999987
No 149
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.80 E-value=55 Score=36.72 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=51.6
Q ss_pred eeCCCC---ChhcHHHHHHHHHHcCCCEEEEccc----------CCcCCC------C---CCeeeccC---chhHHHHHH
Q 003612 51 IHYPRS---TPQMWPRLIAKAKEGGLDVVQTLVF----------WNLHEP------Q---PGQFDFSG---RRDLVRFIK 105 (807)
Q Consensus 51 ~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~----------Wn~hEp------~---~G~~df~g---~~dl~~fl~ 105 (807)
+|..|. ..+..++.++++++.||..=-+++- |+-..- . -+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 555563 6788899999999999986665542 332111 1 12333431 137999999
Q ss_pred HHHHcCcEEEEeeCCcccc
Q 003612 106 EVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 106 ~a~~~GL~Vilr~GPyica 124 (807)
..++.|++|+|..=|+|..
T Consensus 93 ~Lh~~G~kv~l~v~P~i~~ 111 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIKL 111 (340)
T ss_pred HHHHCCCEEEEEecCcccc
Confidence 9999999999999898863
No 150
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=43.39 E-value=1.4e+02 Score=34.79 Aligned_cols=98 Identities=19% Similarity=0.308 Sum_probs=58.2
Q ss_pred EeeCCCC--ChhcHHHHHHHHHHcCCCEEEE-cccCCcCCCCC----Ce--ee---ccCc-----hhHHHHHHHHH-HcC
Q 003612 50 SIHYPRS--TPQMWPRLIAKAKEGGLDVVQT-LVFWNLHEPQP----GQ--FD---FSGR-----RDLVRFIKEVQ-AQG 111 (807)
Q Consensus 50 ~~hy~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~----G~--~d---f~g~-----~dl~~fl~~a~-~~G 111 (807)
+-+.++. +-+.|++.|+.++++|+|+|-. .+---...-.| .+ || |... .|+.++++.++ ++|
T Consensus 11 QTvlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ 90 (423)
T PF14701_consen 11 QTVLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYG 90 (423)
T ss_pred EEEhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcC
Confidence 3445553 6679999999999999999974 22110000011 11 11 2222 48999998884 799
Q ss_pred cEEEEeeCCcccccccC-CCCCcccccCCCccccCCChhhHHH
Q 003612 112 LYVCLRIGPFIEGEWGY-GGLPFWLHDVPGIVFRSDNEPFKFH 153 (807)
Q Consensus 112 L~Vilr~GPyicaEw~~-GG~P~Wl~~~p~~~~R~~d~~~~~~ 153 (807)
|.++...= |+- .-=-.||..+|+.-.-..+.++|+.
T Consensus 91 ll~~~DvV------~NHtA~nS~Wl~eHPEagYN~~nsPHL~p 127 (423)
T PF14701_consen 91 LLSMTDVV------LNHTANNSPWLREHPEAGYNLENSPHLRP 127 (423)
T ss_pred ceEEEEEe------eccCcCCChHHHhCcccccCCCCCcchhh
Confidence 99876531 111 1113599988886444455566543
No 151
>PLN02784 alpha-amylase
Probab=41.40 E-value=62 Score=40.68 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCCcCCC---CCCe-ee----ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWNLHEP---QPGQ-FD----FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~-~d----f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+.+..++++|+++|-+.=+.....+ .|.. |+ |.-..||.++++.|+++||+||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57788889999999988644322211 1111 11 3445799999999999999999863
No 152
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]
Probab=40.99 E-value=1.2e+02 Score=34.63 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=81.2
Q ss_pred chHHHHHHHHHHhhhcCCCCCCCCCceEEEeCCeEEECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCC-------E
Q 003612 3 QCQLLCLFGLLLTTIGGSDGGGGGGNNVTYDGRSLIINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLD-------V 75 (807)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~f~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N-------~ 75 (807)
|.++-+++.|+-.+..|..+........++....|+++|.--.-+.|+-|-+ +.|.-|...|-. .
T Consensus 8 ~~~~t~~~~L~~~~a~g~k~~~~~riGtEhEkf~f~l~g~~pv~~e~e~~i~--------a~L~g~~r~gwepI~d~gn~ 79 (456)
T COG3572 8 ETPLTSVAELTDYLAKGDKEKTDWRIGTEHEKFGFYLDGLSPVPYEGEAGIF--------ALLDGMQRLGWEPIMDVGNI 79 (456)
T ss_pred ccccchHHHHHHHhccCCCcchhhcccchhcccceeecCCCCCCcccccchH--------HHhhhhhhcCceeeccccce
Confidence 3444556777777888888877777778888999999993223344544422 333334444433 3
Q ss_pred EEEcccC----CcCCCCCCeeeccCc-------------hhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccccc-
Q 003612 76 VQTLVFW----NLHEPQPGQFDFSGR-------------RDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHD- 137 (807)
Q Consensus 76 V~~yv~W----n~hEp~~G~~df~g~-------------~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~- 137 (807)
|..--+= -..||. |+|.|+|- .++..+-+.|++.||..+- .||-|.|.+.
T Consensus 80 I~L~~p~g~~aIslEpg-gq~Elsgapletihq~~~e~n~hlavlr~~a~~~gl~fvG-----------lG~~Pkw~r~e 147 (456)
T COG3572 80 IGLVEPIGQGAISLEPG-GQFELSGAPLETIHQTCGEMNQHLAVLREIAAELGLGFVG-----------LGGSPKWTRAE 147 (456)
T ss_pred eeeccCCCCceEEeccC-ceEEecCCchHHHHHHHHHHHHHHHHHHHHHHhcCCceEe-----------ecCCCccccCc
Confidence 3222111 125777 99999875 4677777778888886552 4789999974
Q ss_pred CCCccccCCChhhHHHHHHHHHH
Q 003612 138 VPGIVFRSDNEPFKFHMKRYATM 160 (807)
Q Consensus 138 ~p~~~~R~~d~~~~~~~~~~~~~ 160 (807)
.|-| ..+.| +.|++|+.+
T Consensus 148 ~p~m----pk~RY-~iM~~Ympk 165 (456)
T COG3572 148 VPVM----PKSRY-AIMTRYMPK 165 (456)
T ss_pred CCCC----CchHH-HHHHHHHhh
Confidence 2322 22333 456777765
No 153
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=40.71 E-value=60 Score=40.29 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=47.9
Q ss_pred hcHHHHHHHHHHcCCC--EEEEcccCCcCCCCCCeeecc----CchhHHHHHHHHHHcCcEEEEeeCCccccccc
Q 003612 59 QMWPRLIAKAKEGGLD--VVQTLVFWNLHEPQPGQFDFS----GRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWG 127 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~df~----g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~ 127 (807)
+..+++.+.++++|+. ++-+-+.|.-.- =||+ .-.++..|++..++.|+++|+.+-|+|...-.
T Consensus 311 s~~~dvv~~~~~agiPld~~~~DiDyMd~y-----kDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~ 380 (805)
T KOG1065|consen 311 SVVRDVVENYRAAGIPLDVIVIDIDYMDGY-----KDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSS 380 (805)
T ss_pred HHHHHHHHHHHHcCCCcceeeeehhhhhcc-----cceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCcc
Confidence 3448999999999998 777777775321 1333 22358999999999999999999898876544
No 154
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=40.37 E-value=1.1e+02 Score=34.33 Aligned_cols=75 Identities=17% Similarity=0.352 Sum_probs=55.3
Q ss_pred EEECCEEEEEEEEEeeCCCC-ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccC--chhHHHHHHHHHHcCcE
Q 003612 37 LIINGHRKILFSGSIHYPRS-TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSG--RRDLVRFIKEVQAQGLY 113 (807)
Q Consensus 37 f~ldG~~~~~~~g~~hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~~a~~~GL~ 113 (807)
+.+.|.++.++.| +--+ +++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|..+.+.+++.||.
T Consensus 87 ~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl~ 159 (335)
T PRK08673 87 VEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGLP 159 (335)
T ss_pred EEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCCc
Confidence 6677778888888 2222 67778888889999999999999883 4434466765 33466677778899998
Q ss_pred EEEee
Q 003612 114 VCLRI 118 (807)
Q Consensus 114 Vilr~ 118 (807)
++-.+
T Consensus 160 v~tev 164 (335)
T PRK08673 160 IVTEV 164 (335)
T ss_pred EEEee
Confidence 88765
No 155
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=40.21 E-value=85 Score=34.84 Aligned_cols=69 Identities=22% Similarity=0.410 Sum_probs=51.3
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEccc-CCc-CCCCCCe---eeccCc----hhHHHHHHHHHHcCcEEEEeeCCccccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVF-WNL-HEPQPGQ---FDFSGR----RDLVRFIKEVQAQGLYVCLRIGPFIEGE 125 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~-Wn~-hEp~~G~---~df~g~----~dl~~fl~~a~~~GL~Vilr~GPyicaE 125 (807)
+.+..++.++++++.||-.=.+++- |.. ++..-|. ++|+.+ -|...+++..++.|++|++..=|+|+.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~ 98 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADD 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 7788999999999999987666664 633 2332232 244322 3899999999999999999998888643
No 156
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=39.67 E-value=1.4e+02 Score=33.21 Aligned_cols=152 Identities=17% Similarity=0.174 Sum_probs=88.3
Q ss_pred eEEEeCCeEEECCEEEEEEEEEeeCCCCC---hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHH
Q 003612 29 NVTYDGRSLIINGHRKILFSGSIHYPRST---PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIK 105 (807)
Q Consensus 29 ~v~~~~~~f~ldG~~~~~~~g~~hy~r~~---~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~ 105 (807)
.|++-+.++.+|. .=+.++.-+-+-.. ...-..++...++.|.+||-.- . .=.-.+|..++.+
T Consensus 17 GvTl~HEHl~~~~--~~~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~--------T----~~~~GRdv~~m~~ 82 (316)
T COG1735 17 GVTLMHEHLFIDP--YEIAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDA--------T----NIGIGRDVLKMRR 82 (316)
T ss_pred cceeehhhhccch--HHHhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeC--------C----ccccCcCHHHHHH
Confidence 4666677777775 11222211112221 1223456677777899988543 1 1122479999999
Q ss_pred HHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccc
Q 003612 106 EVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIEN 185 (807)
Q Consensus 106 ~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiEN 185 (807)
.|++.||.+|...|.|.-+.|+ .|+...+ ++.+...+++.++. .+ .|+=|..=|--
T Consensus 83 vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-Gi----~gT~ikAGiIk 138 (316)
T COG1735 83 VAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-GI----AGTGIKAGIIK 138 (316)
T ss_pred HHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-cc----cCCccccceee
Confidence 9999999999999999988754 5775322 45555666666653 22 23333333334
Q ss_pred cccccccccCCCChHHHHHHHHHHHhc-CCccceEEec
Q 003612 186 EYGMVEHSFLEKGPPYVRWAAKLAVDL-QTGVPWVMCK 222 (807)
Q Consensus 186 Eyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~ 222 (807)
|-|.+.. . .+.=.+.|+..+|+. -.++|+.+-.
T Consensus 139 ~~~~~~~-i---Tp~Eek~lrAaA~A~~~Tg~Pi~tHt 172 (316)
T COG1735 139 EAGGSPA-I---TPLEEKSLRAAARAHKETGAPISTHT 172 (316)
T ss_pred eccCccc-C---CHHHHHHHHHHHHHhhhcCCCeEEec
Confidence 5555321 1 122235666666665 3578876543
No 157
>PRK12677 xylose isomerase; Provisional
Probab=39.61 E-value=2.9e+02 Score=31.69 Aligned_cols=91 Identities=21% Similarity=0.194 Sum_probs=54.1
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeecc---CchhHHHHHHHHHHcCcEEE-EeeCCcccccccCCCCCc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFS---GRRDLVRFIKEVQAQGLYVC-LRIGPFIEGEWGYGGLPF 133 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~~a~~~GL~Vi-lr~GPyicaEw~~GG~P~ 133 (807)
+-.+.+.+++++++|+..|+... +..--|+.+ ....++++.+++++.||.|. +-+.-|. -|.
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh~------~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~--------~p~ 95 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFHD------DDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFT--------HPV 95 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEecc------cccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCC--------Ccc
Confidence 34578999999999999998841 111112221 11248899999999999987 4443111 111
Q ss_pred ccccCCCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 134 WLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 134 Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
+-. + .+-+.|+...+...+++++.+..-+
T Consensus 96 ~~~---g-~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 96 FKD---G-AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ccC---C-cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 111 1 2344566655665566666666655
No 158
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=39.58 E-value=39 Score=39.10 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEE-ccc---CCcCCCCCCee-----eccCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQT-LVF---WNLHEPQPGQF-----DFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~-yv~---Wn~hEp~~G~~-----df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+.|.-+|.+|+++|=+ .++ -..|--..-.| .|....|+.++++.|++.||+||+..
T Consensus 32 ~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 32 TEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 37888999999999954 222 11111100000 47788899999999999999999864
No 159
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=39.45 E-value=62 Score=34.67 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=40.1
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++|++|++.|-+. |..++--|.-+ +.++..=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~viiG-----HSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVIIG-----HSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEeC-----cccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 457899999999996 66666555544 46788889999999999999998
No 160
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.33 E-value=50 Score=35.27 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=39.1
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCC-CeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQP-GQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
+.+++.++.++++|.+.|++.-+-...++.+ -.++. -...|..+.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 5578889999999999998732100111111 01111 113588889999999999999874
No 161
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=36.79 E-value=1.4e+02 Score=33.43 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=47.1
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEccc----CCcCCCC------CCeee--------ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVF----WNLHEPQ------PGQFD--------FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~------~G~~d--------f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+.+..++.++.|....+|+...++- |.+.-+. .|.+. |=-..|+..+++.|++.|+.||..+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7899999999999999999999984 6543221 23221 1113589999999999999999753
No 162
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=36.66 E-value=90 Score=37.54 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=49.8
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcc-cCCcCCCCCCee---e-----ccCc----hhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLV-FWNLHEPQPGQF---D-----FSGR----RDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv-~Wn~hEp~~G~~---d-----f~g~----~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
++.-++.|..|++..||.|+.|= .|.+|.|-|+.= + +.++ .=+...|+.|++.|+.++.---=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 45778999999999999999985 499999987533 2 2222 246789999999999998754333222
Q ss_pred cc--cCCCCCcccc
Q 003612 125 EW--GYGGLPFWLH 136 (807)
Q Consensus 125 Ew--~~GG~P~Wl~ 136 (807)
+. ..|=.|.|..
T Consensus 197 ~~~~~~gv~~eW~l 210 (559)
T PF13199_consen 197 NNYEEDGVSPEWGL 210 (559)
T ss_dssp TT--S--SS-GGBE
T ss_pred cCcccccCCchhhh
Confidence 22 3455688885
No 163
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=35.80 E-value=68 Score=34.51 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=35.2
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++|++|++.|-+. |..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVIIG-----HSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEeC-----cccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 457899999999996 66666555432 12233334449999999999998
No 164
>PRK10658 putative alpha-glucosidase; Provisional
Probab=35.29 E-value=94 Score=38.23 Aligned_cols=66 Identities=26% Similarity=0.465 Sum_probs=46.9
Q ss_pred ChhcHHHHHHHHHHcCCCE--EEEcccCCcCCC-CCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 57 TPQMWPRLIAKAKEGGLDV--VQTLVFWNLHEP-QPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~--V~~yv~Wn~hEp-~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
+.+...+.++++++.|+-. |-.-.+|- .. .-+.|.|+-. -|.+.+++..++.|++|++..-|||..
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 3455678889999999874 44444553 22 1234555422 388999999999999999999999964
No 165
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=34.90 E-value=1.4e+02 Score=33.14 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=44.8
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEccc--CCc---CCCCC---Cee---------------e---ccCchhHHHHHHHHHH
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVF--WNL---HEPQP---GQF---------------D---FSGRRDLVRFIKEVQA 109 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~---hEp~~---G~~---------------d---f~g~~dl~~fl~~a~~ 109 (807)
.+.+..++.++.|...++|++..++- |.+ ..|.. |.+ . |=-..|+..+++.|++
T Consensus 14 ~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~ 93 (326)
T cd06564 14 YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKD 93 (326)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Confidence 37899999999999999999998764 332 11211 110 0 1112589999999999
Q ss_pred cCcEEEEee
Q 003612 110 QGLYVCLRI 118 (807)
Q Consensus 110 ~GL~Vilr~ 118 (807)
.||.||..+
T Consensus 94 rgI~vIPEI 102 (326)
T cd06564 94 RGVNIIPEI 102 (326)
T ss_pred cCCeEeccC
Confidence 999999753
No 166
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=34.60 E-value=35 Score=30.00 Aligned_cols=40 Identities=25% Similarity=0.496 Sum_probs=30.3
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCc
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGL 112 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL 112 (807)
.....|-.-+|.+-+ .||.|..|||.. |.+||++|.|.-+
T Consensus 19 ls~hhWLNflQaAyR--------------L~PgPS~~DF~q---Lr~flk~alkTpv 58 (92)
T PF02228_consen 19 LSTHHWLNFLQAAYR--------------LQPGPSSFDFHQ---LRNFLKLALKTPV 58 (92)
T ss_dssp STHHHHHHHHHHHHH--------------SS---STTTHHH---HHHHHHHHHT-TT
T ss_pred cCHHHHHHHHHHHHh--------------cCCCCCcccHHH---HHHHHHHHHcCCe
Confidence 466889998888877 689999999986 9999999987433
No 167
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=34.55 E-value=43 Score=33.41 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=42.9
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccC-CcCCCC--CCeeeccCchhHHHHHHHHHHcCcEEEEeeCCc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFW-NLHEPQ--PGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPF 121 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~W-n~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPy 121 (807)
.+..++.++.++++|...|.+...+ +...+. +..++.. ...|..+++.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 4677899999999999999987653 111111 1122211 1258889999999999999998643
No 168
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=34.34 E-value=1.3e+02 Score=24.87 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=34.7
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
...++.++.+|+.|++.|-+= -|. ++.+ ...+.+.+++.||.||.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iT----Dh~------~~~~---~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAIT----DHG------NLFG---AVEFYKAAKKAGIKPII 59 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEe----eCC------cccC---HHHHHHHHHHcCCeEEE
Confidence 346789999999999999874 122 3444 67888999999998875
No 169
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=33.69 E-value=2.9e+02 Score=31.00 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCceEeccccccccc
Q 003612 152 FHMKRYATMIVNMMKAARLYASQGGPIILSQIENEYGM 189 (807)
Q Consensus 152 ~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg~ 189 (807)
+..++|++..+..+..+ ..+.++|.+--.||.+.
T Consensus 294 ~~F~~~l~~a~~~~~~~----~~~~~~vfInAWNEW~E 327 (345)
T PF14307_consen 294 ELFKKWLREAIRRVKEN----PGDERIVFINAWNEWAE 327 (345)
T ss_pred HHHHHHHHHHHHHHHhC----CCCCCEEEEEeccccCC
Confidence 44677788888877643 35779999999999975
No 170
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=33.52 E-value=2e+02 Score=34.37 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=49.0
Q ss_pred ECCEEEEEEEEEe--eCCC-CChhcHHHHHHHHHHcCCCEEEEccc-----------CCcCCCCCCeeeccCchhHHHHH
Q 003612 39 INGHRKILFSGSI--HYPR-STPQMWPRLIAKAKEGGLDVVQTLVF-----------WNLHEPQPGQFDFSGRRDLVRFI 104 (807)
Q Consensus 39 ldG~~~~~~~g~~--hy~r-~~~~~W~~~l~k~ka~G~N~V~~yv~-----------Wn~hEp~~G~~df~g~~dl~~fl 104 (807)
-+|++-+| +|.+ .|-| +.+|.=++.+++++.+|++ +|.. |.- -|+-+-.--|..+|
T Consensus 11 A~g~r~fi-CGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlYAPKDDyKHR~~WRE------lY~vEEa~~L~~Li 80 (891)
T KOG3698|consen 11 AVGNRKFI-CGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLYAPKDDYKHRSLWRE------LYNVEEATYLRNLI 80 (891)
T ss_pred ccccceeE-EEeeccccCCCCCHHHHHHHHHHHHhcccc---eeeecccchhHHHHHHHH------HhhhHHHHHHHHHH
Confidence 35666544 4534 5888 5899999999999999999 5542 321 12222223488899
Q ss_pred HHHHHcCcEEEEeeC
Q 003612 105 KEVQAQGLYVCLRIG 119 (807)
Q Consensus 105 ~~a~~~GL~Vilr~G 119 (807)
..|+++++..+-.+.
T Consensus 81 ~aAke~~i~F~YAiS 95 (891)
T KOG3698|consen 81 EAAKENNINFVYAIS 95 (891)
T ss_pred HHHHhcCceEEEEcC
Confidence 999999999885544
No 171
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.12 E-value=64 Score=34.25 Aligned_cols=61 Identities=11% Similarity=-0.057 Sum_probs=39.5
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
+..++.++.++++|..+|.+...+......+.+..-.....|.++.+.|+++|+.+.+.|-
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 145 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPI 145 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 4578888999999999998743322111111111111123478888999999999999873
No 172
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=33.12 E-value=94 Score=36.37 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=45.4
Q ss_pred eCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 52 HYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 52 hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.|-+.|.+.-++.++++.+.|++.|+++.+-|.. .++...++.|+++|+.|.+.+
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 4556678888999999999999999999876653 258899999999999886654
No 173
>PLN03059 beta-galactosidase; Provisional
Probab=33.01 E-value=1.3e+02 Score=37.98 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=45.5
Q ss_pred CCceEEEEEEECCCCCCc------eEEeeCCCc-eEEEEEcCeeeeeccccccCCCCCCcceeeccCcc-cccccccEEE
Q 003612 598 QPLTWYKTVFDAPTGSDP------VAINLISMG-KGEAWVNGQSIGRYWVSFLTPQGTPSQSWYHIPRS-FLKPTGNLLV 669 (807)
Q Consensus 598 ~~p~fYk~~F~~~~~~d~------~fLd~~g~g-KG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~-~Lk~g~N~Iv 669 (807)
....||+++|+++..... ..|.+.+.+ .-+|||||.-+|.-.-+- .+++.+ ++.+ -|+.|.|.|-
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~----~~~~~~---~~~~v~l~~g~n~L~ 541 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGEL----SNPKLT---FSQNVKLTVGINKIS 541 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeec----CCcceE---EecccccCCCceEEE
Confidence 467999999998653211 136666655 479999999999865321 134333 4443 3678999997
Q ss_pred EEEe
Q 003612 670 LLEE 673 (807)
Q Consensus 670 IfE~ 673 (807)
||=+
T Consensus 542 iLse 545 (840)
T PLN03059 542 LLSV 545 (840)
T ss_pred EEEE
Confidence 7743
No 174
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=32.53 E-value=1.1e+02 Score=33.34 Aligned_cols=109 Identities=13% Similarity=0.198 Sum_probs=63.1
Q ss_pred EEEEEEeeCCCCCh---hcH-HHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCC
Q 003612 45 ILFSGSIHYPRSTP---QMW-PRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGP 120 (807)
Q Consensus 45 ~~~~g~~hy~r~~~---~~W-~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GP 120 (807)
+.+++..|+...|. ... -++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+.||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 35666677655322 222 23444444699999988543 3433 3789999999986655344443
Q ss_pred ccc---------ccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHh
Q 003612 121 FIE---------GEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKA 167 (807)
Q Consensus 121 yic---------aEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~ 167 (807)
..+ .+|..--+|.|+.+.=. ....+++...+.--++..+++..|..
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 322 46665667888863100 01223344455666677777777764
No 175
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=32.18 E-value=49 Score=40.46 Aligned_cols=57 Identities=12% Similarity=0.365 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEEc--------c-cCCcCCCC----CCeeec----cCchhHHHHHHHHHHcCcEEEEee
Q 003612 62 PRLIAKAKEGGLDVVQTL--------V-FWNLHEPQ----PGQFDF----SGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~y--------v-~Wn~hEp~----~G~~df----~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+++|..+|.+|+|+|+.- + .|.++-.. -+.|-- ....++..+++.|++.||-|||..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 456999999999999852 2 35443210 011100 013589999999999999999864
No 176
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.97 E-value=96 Score=29.09 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=32.2
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEE
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVC 115 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 115 (807)
.|++...+.++.++++|+..|-.. +| ..-+++++.|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 388999999999999998877664 22 235899999999999976
No 177
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=31.89 E-value=73 Score=36.60 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=47.5
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEE-EEeeCCcccccccCCCCC
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYV-CLRIGPFIEGEWGYGGLP 132 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~V-ilr~GPyicaEw~~GG~P 132 (807)
...+.-+..|+++|++|+|.|-++..=.---+.+-.|.=+ ..|-...++++.+.|..+ +|..| ||+|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~A-i~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~ 257 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRDA-ISDARNVFDMGAELGFEMDILDIG---------GGFP 257 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHHH-HHHHHHHHHHHHhcCceEEEeecC---------CCCC
Confidence 5667889999999999999999985433222222222211 246677788999999986 57887 8888
No 178
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=31.88 E-value=1.2e+02 Score=38.83 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=69.9
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCc--hhHHHHHHHHHHcCcEEEEeeCCcccccccC-----C
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGR--RDLVRFIKEVQAQGLYVCLRIGPFIEGEWGY-----G 129 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~-----G 129 (807)
+.+..++.++++++.|+-.=.+++-|.++.- -+.|.|+-. -|...+++..++.|+++|+..-|+|..+-.+ |
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg 277 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSG 277 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhH
Confidence 5566789999999999987777777666542 234555432 4889999999999999998888888765211 0
Q ss_pred -CCCcccccCCCccc-------cCCChhh-HHHHHHHHHHHHHHHH
Q 003612 130 -GLPFWLHDVPGIVF-------RSDNEPF-KFHMKRYATMIVNMMK 166 (807)
Q Consensus 130 -G~P~Wl~~~p~~~~-------R~~d~~~-~~~~~~~~~~i~~~l~ 166 (807)
.--.|+++..+-.+ .+.-+.| .+++++|+..+.+.+.
T Consensus 278 ~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~ 323 (978)
T PLN02763 278 CENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV 323 (978)
T ss_pred hhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHh
Confidence 00124432111101 1223455 3568889988777664
No 179
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=30.90 E-value=58 Score=34.69 Aligned_cols=86 Identities=22% Similarity=0.353 Sum_probs=53.4
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCC--CeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccc
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQP--GQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWL 135 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~--G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl 135 (807)
.-.|+++|.-+|++||+.|+..| -|..+ -..||+. .-.-.+.+++.+.|+.+ |-+| |
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSv----DEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmC-----------l 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSV----DESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMC-----------L 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEec----cchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchh-----------h
Confidence 46799999999999999999985 34332 2455553 12456778888888743 2233 1
Q ss_pred ccCCCccccCCChhhHHHHHHHHHHHHHH
Q 003612 136 HDVPGIVFRSDNEPFKFHMKRYATMIVNM 164 (807)
Q Consensus 136 ~~~p~~~~R~~d~~~~~~~~~~~~~i~~~ 164 (807)
..+....+-+.|+.-.+...+-|.+-+..
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~L 104 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQL 104 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11111224577887766655555554444
No 180
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=30.23 E-value=1.6e+02 Score=33.33 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHcCcEEEEeeCCcccccccCCCCCcccccCCCc------cccC-CChhhHHHHHHHHHHHHHHHHhcccccccCCceE
Q 003612 107 VQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGI------VFRS-DNEPFKFHMKRYATMIVNMMKAARLYASQGGPII 179 (807)
Q Consensus 107 a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~------~~R~-~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII 179 (807)
+-..|+.|..-| |+ .|+|++..-.+ +||. ..+.| ..|+...+..++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~y----A~~l~~fv~~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADY----ADYLNDFVLEMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHH----HHHHHHHHHHHH------hCCCcee
Confidence 556788888766 44 89999643221 2331 11222 223333334444 4677999
Q ss_pred eccccccccccccccCC---CChHHHHHHHHHHHh
Q 003612 180 LSQIENEYGMVEHSFLE---KGPPYVRWAAKLAVD 211 (807)
Q Consensus 180 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~ 211 (807)
+..|.||..... .|.. ..++.++++++-++.
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~s 204 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLAS 204 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhh
Confidence 999999987421 1211 234555555554444
No 181
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=29.72 E-value=1.2e+02 Score=33.35 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=44.2
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCC--CCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEP--QPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
.++..++.++.+++.|.+.|.+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+...
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~~ 181 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHAY 181 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEeC
Confidence 4788899999999999999999975432111 11211122 13488999999999999988763
No 182
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=29.70 E-value=1.9e+02 Score=30.23 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=62.6
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeecc-CchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFS-GRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWL 135 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl 135 (807)
.+..++..++.++++|+..+-+|..... ....+..+ |..|=...+.+|+++|+. + |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 5788999999999999999999977655 22223333 667888999999998872 2 344444
Q ss_pred ccCCCccccCCChhhHHHHHHHHHHHHHHHHhc
Q 003612 136 HDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAA 168 (807)
Q Consensus 136 ~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~ 168 (807)
.-+.+. .+..+...+..|++.+...|...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 22336678888999998888753
No 183
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=29.63 E-value=66 Score=36.21 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=45.5
Q ss_pred eeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 51 IHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 51 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.++ |.+...-.-..+.++++|-++|.+.++|.-.++. .-+-.-..+|.++.+.|+++||-+++.+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 5544443344677999999999999999854331 0011223468999999999999999864
No 184
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.63 E-value=75 Score=33.51 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=39.0
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
+.+++.++.++++|..+|++..-+..-++..-+..-.....+.++.+.|++.|+.+.+.+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 678888999999999999864322100000001001112347888899999999999987
No 185
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=28.52 E-value=1.2e+02 Score=33.36 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=46.7
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEccc----CCcCCCC------CC----------eeeccCchhHHHHHHHHHHcCcEEE
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVF----WNLHEPQ------PG----------QFDFSGRRDLVRFIKEVQAQGLYVC 115 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~------~G----------~~df~g~~dl~~fl~~a~~~GL~Vi 115 (807)
.+.+..++.++.|...++|++..++- |.+--+. .| .|. ..|+..+++.|++.||.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEE
Confidence 47889999999999999999999987 7543211 12 222 2479999999999999999
Q ss_pred Eee
Q 003612 116 LRI 118 (807)
Q Consensus 116 lr~ 118 (807)
..+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 753
No 186
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=28.50 E-value=1e+02 Score=32.95 Aligned_cols=50 Identities=22% Similarity=0.384 Sum_probs=40.7
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEE-EeeCCcccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVC-LRIGPFIEG 124 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lr~GPyica 124 (807)
..+..++.++++|++|+ -|+.+| +|. ...++.|++.|...| |.+|||..+
T Consensus 111 ~~~~l~~~i~~L~~~gI-rVSLFi-----dP~------------~~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 111 QFDKLKPAIARLKDAGI-RVSLFI-----DPD------------PEQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEEe-----CCC------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 34666888999999999 566653 666 677999999999987 999999976
No 187
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=28.40 E-value=2.7e+02 Score=29.48 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=44.5
Q ss_pred CCeeecc-CchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHh
Q 003612 89 PGQFDFS-GRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKA 167 (807)
Q Consensus 89 ~G~~df~-g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~ 167 (807)
.|...+. ...++..+++.|++.|++|++..| .|..+. +.. + + .++. .-+++.+.|+..+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~---~~~----~-~--~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPE---FTA----A-L--NDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCc---chh----h-h--cCHH---HHHHHHHHHHHHHHH
Confidence 4555554 335788999999999999999987 122111 110 0 1 1222 235678888888886
Q ss_pred cccccccCCceEecccccccc
Q 003612 168 ARLYASQGGPIILSQIENEYG 188 (807)
Q Consensus 168 ~~l~~~~ggpII~~QiENEyg 188 (807)
+++ .| +.|+=|+.
T Consensus 98 ~~~----DG----IdiDwE~~ 110 (253)
T cd06545 98 YNL----DG----IDVDLEGP 110 (253)
T ss_pred hCC----Cc----eeEEeecc
Confidence 543 23 55555664
No 188
>PRK10426 alpha-glucosidase; Provisional
Probab=28.30 E-value=1.3e+02 Score=36.84 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=47.3
Q ss_pred hcHHHHHHHHHHcCCCEEEEcc-cCCcCCC----CCCeeeccCc----hhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLV-FWNLHEP----QPGQFDFSGR----RDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv-~Wn~hEp----~~G~~df~g~----~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
+..++.++++++.|+..=.+++ .|..... ...-+||+.+ -|.+.+++..++.|++|++..-|+|+.
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~ 295 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS 295 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC
Confidence 4467889999999987655554 3653221 1122344433 378999999999999999999999986
No 189
>PRK09267 flavodoxin FldA; Validated
Probab=28.21 E-value=3e+02 Score=27.08 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=47.9
Q ss_pred ECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEE
Q 003612 39 INGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVC 115 (807)
Q Consensus 39 ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 115 (807)
++.-..++++...|+...++..|.+-+.+++...++-..+.+|= ......-.-.|. .-+..+-+.+.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 44556688988898778778899998988888777777777663 211111001122 125666777888896655
No 190
>PLN02561 triosephosphate isomerase
Probab=28.02 E-value=1.2e+02 Score=32.89 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=38.9
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++|++|++.|-+. |..++..|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVILG-----HSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEEC-----cccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 457899999999996 76666665544 34567778889999999999998
No 191
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=27.77 E-value=98 Score=38.22 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCEEEE-cccCCcCCCC---CC-----------------eeeccC-----chhHHHHHHHHHHcCcEEEEe
Q 003612 64 LIAKAKEGGLDVVQT-LVFWNLHEPQ---PG-----------------QFDFSG-----RRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 64 ~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G-----------------~~df~g-----~~dl~~fl~~a~~~GL~Vilr 117 (807)
.|.-+|.+|+++|+. .|+.-..++. +| .|-=+. .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 389999999999996 6664333332 22 222222 357899999999999999997
Q ss_pred e
Q 003612 118 I 118 (807)
Q Consensus 118 ~ 118 (807)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 192
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.70 E-value=1.3e+02 Score=32.75 Aligned_cols=50 Identities=24% Similarity=0.219 Sum_probs=40.9
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEe
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
.|.+.-++++++..+.|+..|+++++.+. ...+...++.|++.|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 45666789999999999999999887654 234888999999999988753
No 193
>PRK15492 triosephosphate isomerase; Provisional
Probab=27.66 E-value=1.2e+02 Score=32.89 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=38.3
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++|++|++.|-+. |..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~viiG-----HSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMIG-----HSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEEC-----ccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 457899999999996 76666665433 34456678889999999999998
No 194
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=27.24 E-value=1e+02 Score=34.75 Aligned_cols=114 Identities=22% Similarity=0.287 Sum_probs=63.6
Q ss_pred EEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHH
Q 003612 75 VVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHM 154 (807)
Q Consensus 75 ~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~ 154 (807)
.|.+.|+|+++--+.= =...++.|+++|++|+--+ .-||+ +-+.|+.. .+.. ++ +..
T Consensus 32 yvD~fvywsh~~~~iP---------p~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~----lL~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTIP---------PADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED----FLKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccCC---------CcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH----Hhcc-Cc---ccc
Confidence 4777888887432200 1567899999999997422 12555 34456642 1221 11 113
Q ss_pred HHHHHHHHHHHHhcccccccCCceEecccccccc-ccccccCCCChHHHHHHHHHHHhc--CCccceEE
Q 003612 155 KRYATMIVNMMKAARLYASQGGPIILSQIENEYG-MVEHSFLEKGPPYVRWAAKLAVDL--QTGVPWVM 220 (807)
Q Consensus 155 ~~~~~~i~~~l~~~~l~~~~ggpII~~QiENEyg-~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~ 220 (807)
.++.++|+..++.+++ .| +.+-+||..+ ... .+.-.++++.|++.+++. +..|-|+-
T Consensus 89 ~~~a~kLv~lak~yGf----DG--w~iN~E~~~~~~~~---~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 89 FPVADKLVEVAKYYGF----DG--WLINIETELGDAEK---AKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred hHHHHHHHHHHHHhCC----Cc--eEeeeeccCCcHHH---HHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 4577788888876433 34 6666777763 210 012335666666666654 34455663
No 195
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.09 E-value=2.6e+02 Score=31.09 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=47.3
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEcc----cCCcCC---CC---CCeee-ccCchhHHHHHHHHHHcCcEEEEee
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLV----FWNLHE---PQ---PGQFD-FSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv----~Wn~hE---p~---~G~~d-f~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.|.+..++.|+.|....+|+...++ .|.+-- |+ .|.+. |=-..|+..+++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 5799999999999999999999998 475421 21 22211 1123589999999999999999753
No 196
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=26.99 E-value=2.6e+02 Score=26.09 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=48.4
Q ss_pred CceEEEEEcCeeeeeccccccCCCCCCcceeeccCcccccccccEEEEEEecCCCCCeeEEEe-ecccccccccccCCCC
Q 003612 623 MGKGEAWVNGQSIGRYWVSFLTPQGTPSQSWYHIPRSFLKPTGNLLVLLEEENGYPPGISIDT-VSVTTLCGHVSDSHLP 701 (807)
Q Consensus 623 ~gKG~v~VNG~nlGRYW~~~~~~~gGPQqtlYhVP~~~Lk~g~N~IvIfE~~~~~~~~i~~~~-~~~~~~c~~~~e~~~~ 701 (807)
-.+-+|++||.-+.||=.+. ....+++- |+.. .|.|+|.| + +..+++.+ .=.+.+|.+.+
T Consensus 26 ~~~~~I~~~g~~~~~i~L~~----~~~~~~i~-i~~~---~g~~~i~i---~---~g~vrv~~s~CpdkiCv~~G----- 86 (113)
T PF07009_consen 26 GKYAVIYVDGKEVKRIPLDK----VNEDKTIE-IDGD---GGYNTIEI---K---DGKVRVIESDCPDKICVKTG----- 86 (113)
T ss_dssp EEEEEEEETTEEEEEEETTS-----BSEEEEE-EETT---TCEEEEEE---E---TTEEEEEEESTSS-HHHHS------
T ss_pred CeEEEEEECCEEEEEEECCC----CCCCEEEE-EecC---CcEEEEEE---E---CCEEEEEECCCCCcchhhCC-----
Confidence 35678999999999985321 02345555 7554 35565554 3 35577777 46667888776
Q ss_pred cccccccccccccccccccCCCCCceeeecCCCCeEeEEee
Q 003612 702 PVISWRSQNQRTLKTHKRIPGRRPKVQIRCPSGRKISKILF 742 (807)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Cp~g~~I~~I~~ 742 (807)
|-+..+ ..+-|-+++++.+|..
T Consensus 87 ----~I~~~G---------------~~IVCLPn~lvI~I~~ 108 (113)
T PF07009_consen 87 ----WISRPG---------------QSIVCLPNRLVIEIEG 108 (113)
T ss_dssp ----SB-STT----------------EEEETTTTEEEEEEE
T ss_pred ----CcCCCC---------------CEEEEcCCEEEEEEEe
Confidence 332223 3468988887655643
No 197
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.87 E-value=3.6e+02 Score=31.28 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred ECCEEEEEEEEEeeCCC---CChhcHHHHHHHHHHcCCC----EEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcC
Q 003612 39 INGHRKILFSGSIHYPR---STPQMWPRLIAKAKEGGLD----VVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQG 111 (807)
Q Consensus 39 ldG~~~~~~~g~~hy~r---~~~~~W~~~l~k~ka~G~N----~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~G 111 (807)
+.+.-|+|+.++-+-++ +.++.-+.--+.+++.|++ ++.....-|+-.|.+..++++ ..-+.+-|+.|.+.|
T Consensus 153 ~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA~~LG 231 (413)
T PTZ00372 153 IAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRCEQLG 231 (413)
T ss_pred cCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHHHHcC
Q ss_pred cE-EEEeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHHhcccccccCCceEeccccc
Q 003612 112 LY-VCLRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKAARLYASQGGPIILSQIEN 185 (807)
Q Consensus 112 L~-Vilr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~~~l~~~~ggpII~~QiEN 185 (807)
.. |++.|| ........-+.+++..+.|-..++ ...|..|+. ||
T Consensus 232 a~~VV~HPG-----------------------s~~~~~~~ee~i~~i~e~L~~~la------~~~gV~IlL--EN 275 (413)
T PTZ00372 232 IKLYNFHPG-----------------------STVGQCSKEEGIKNIADCINKAHE------ETKSVIIVL--EN 275 (413)
T ss_pred CCEEEECCC-----------------------cCCCCCCHHHHHHHHHHHHHHHHh------CcCCCEEEE--ec
No 198
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=26.80 E-value=1.1e+02 Score=32.60 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=41.3
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEE-EeeCCccccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVC-LRIGPFIEGE 125 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lr~GPyicaE 125 (807)
..+...+.++++|++|+- |+.+ .+|. ...++.|++.|...| |.+|||..+-
T Consensus 108 ~~~~l~~~i~~l~~~gI~-VSLF-----iDPd------------~~qi~~A~~~GAd~VELhTG~Ya~a~ 159 (234)
T cd00003 108 QAEKLKPIIERLKDAGIR-VSLF-----IDPD------------PEQIEAAKEVGADRVELHTGPYANAY 159 (234)
T ss_pred CHHHHHHHHHHHHHCCCE-EEEE-----eCCC------------HHHHHHHHHhCcCEEEEechhhhcCC
Confidence 456678889999999994 7775 5676 677999999999988 9999998743
No 199
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=26.66 E-value=3.2e+02 Score=30.78 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=47.1
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEccc----CCcCCCC------CCeeecc---CchhHHHHHHHHHHcCcEEEEe
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVF----WNLHEPQ------PGQFDFS---GRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp~------~G~~df~---g~~dl~~fl~~a~~~GL~Vilr 117 (807)
.|.+..++.++.|....+|+...++- |.+--+. .|.|.=. -..|+..+++.|++.||.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 46899999999999999999998873 6553321 2333211 1258999999999999999985
No 200
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=26.56 E-value=2.6e+02 Score=26.41 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=50.1
Q ss_pred EECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEe
Q 003612 38 IINGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 38 ~ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
.+.|..+++.+| ++...-+++.+.+-++.+.+.|.-.+-+.+-=... .-| +.++++|.++++-+|.-
T Consensus 39 ~l~~gElvlttg-~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP-----------~~~i~~A~~~~lPli~i 105 (123)
T PF07905_consen 39 WLRGGELVLTTG-YALRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP-----------EEIIELADELGLPLIEI 105 (123)
T ss_pred hCCCCeEEEECC-cccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC-----------HHHHHHHHHcCCCEEEe
Confidence 478888888888 33333367789999999999999988885421111 222 88999999999999875
Q ss_pred e
Q 003612 118 I 118 (807)
Q Consensus 118 ~ 118 (807)
|
T Consensus 106 p 106 (123)
T PF07905_consen 106 P 106 (123)
T ss_pred C
Confidence 5
No 201
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.31 E-value=2.7e+02 Score=31.46 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=46.0
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEccc----CCcCCC---C---CCeee-------------------ccCchhHHHHHHH
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVF----WNLHEP---Q---PGQFD-------------------FSGRRDLVRFIKE 106 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp---~---~G~~d-------------------f~g~~dl~~fl~~ 106 (807)
.+.+..++.+..|...++|+...++. |.+--+ + .|.|. |=-..|+..+++.
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 94 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAY 94 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHH
Confidence 47899999999999999999999874 533211 1 12221 0013589999999
Q ss_pred HHHcCcEEEEee
Q 003612 107 VQAQGLYVCLRI 118 (807)
Q Consensus 107 a~~~GL~Vilr~ 118 (807)
|+++||.||..+
T Consensus 95 A~~rgI~VIPEI 106 (357)
T cd06563 95 AAERGITVIPEI 106 (357)
T ss_pred HHHcCCEEEEec
Confidence 999999999753
No 202
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=26.14 E-value=1.4e+02 Score=29.04 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=45.5
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeecc-----CchhHHHHHHHHHHcCcEEEEeeCCcccccccCCCC
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFS-----GRRDLVRFIKEVQAQGLYVCLRIGPFIEGEWGYGGL 131 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-----g~~dl~~fl~~a~~~GL~Vilr~GPyicaEw~~GG~ 131 (807)
.+.+.+..++.|+++|+..+-+|.... ....+|+ |..|=...+..|+++|+. -|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~-----~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p---------------~gt 95 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGG-----RETSDFTYGYAQGVADARDAVAAARALGFP---------------AGT 95 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-------------S-B--HHHHHHHHHHHHHHHHHTT-----------------SS-
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccc-----ccccccccHHHHHHHHHHHHHHHHHHcCCC---------------CCC
Confidence 468889999999999999999997662 2223343 456788899999998883 134
Q ss_pred CcccccCCCccccCCChhhHHHHHHHHHHHHHHHHh
Q 003612 132 PFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMKA 167 (807)
Q Consensus 132 P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~~ 167 (807)
|-++.-+-+ ..+..+...+..|++.+...|..
T Consensus 96 ~IYfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 96 PIYFAVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEEEE--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EEEEEeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 445532211 24666777888888888888874
No 203
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=26.04 E-value=1.3e+02 Score=31.38 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=35.3
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
..++|++|++.|-+. |..++ |..+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~viiG-----HSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLIN-----HSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEEC-----cccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 457899999999996 55555 4333 58999999999999999987
No 204
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=25.91 E-value=1.1e+02 Score=36.97 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=44.6
Q ss_pred eeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 51 IHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 51 ~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
+-|.|.|.+..+..++++++.|+..||++.+.|.. .++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 34666777888999999999999999999766653 3688999999999998643
No 205
>PTZ00333 triosephosphate isomerase; Provisional
Probab=25.68 E-value=1.4e+02 Score=32.25 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=40.2
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++|++|++.|-+. |..++-.|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTILG-----HSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEEC-----cccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 357899999999997 77666666444 45688888999999999999998
No 206
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.36 E-value=1.1e+02 Score=32.79 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHcCCCEEEEcccCC-cCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEee
Q 003612 60 MWPRLIAKAKEGGLDVVQTLVFWN-LHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRI 118 (807)
Q Consensus 60 ~W~~~l~k~ka~G~N~V~~yv~Wn-~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~ 118 (807)
.+++.++.++++|.++|.+.-... ..+..+-.++. ....+.++.+.|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR-FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH-HHHHHHHHHHHHHHcCCEEEEee
Confidence 567889999999999998632100 00000001111 11347788899999999999985
No 207
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=24.80 E-value=86 Score=35.78 Aligned_cols=84 Identities=13% Similarity=0.171 Sum_probs=61.8
Q ss_pred EEEeCCeEEECCEEEEEEEEEeeCCC-CChhcHHHHHHHHHHc-CCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHH
Q 003612 30 VTYDGRSLIINGHRKILFSGSIHYPR-STPQMWPRLIAKAKEG-GLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEV 107 (807)
Q Consensus 30 v~~~~~~f~ldG~~~~~~~g~~hy~r-~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a 107 (807)
|-.-+-.|-+.-.+-.+.+=|+.|+- .|...|+-+|..+.++ -=||+.+-|- |=+.|--++|+-.- |.+++++|
T Consensus 153 ILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~H---L~kiae~A 228 (447)
T KOG0259|consen 153 ILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSEDH---LKKIAETA 228 (447)
T ss_pred eecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHHH---HHHHHHHH
Confidence 44444444444444444445665544 5999999999999987 6788887543 66778878888877 99999999
Q ss_pred HHcCcEEEEe
Q 003612 108 QAQGLYVCLR 117 (807)
Q Consensus 108 ~~~GL~Vilr 117 (807)
+|+||.||..
T Consensus 229 ~klgi~vIaD 238 (447)
T KOG0259|consen 229 KKLGIMVIAD 238 (447)
T ss_pred HHhCCeEEeh
Confidence 9999999963
No 208
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=24.42 E-value=4e+02 Score=24.95 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=39.8
Q ss_pred cEEEEEEEeCCCCCCcceeEeC-CcceEEEEEECCEEEEEEecccC-----CcceEEEeeeeecCC-ccEEEEEEecCC
Q 003612 460 YLWYNFRFKHDPSDSESVLKVS-SLGHVLHAFINGEFVGSAHGKHS-----DKSFTLEKMVHLING-TNNVSLLSVMVG 531 (807)
Q Consensus 460 YllY~t~i~~~~~~~~~~L~i~-~~~D~a~Vfvng~~vG~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILvEn~G 531 (807)
.+.++..|..+. .+.-++. ...|.+.+||||+.+-...+... .........+.+.+| .+.|.|...+.+
T Consensus 47 ~~~~~G~~~~~~---~G~y~f~~~~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 47 SVRWTGYFKPPE---TGTYTFSLTSDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EEEEEEEEeccc---CceEEEEEEecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 456777777653 3333332 36789999999999976654322 001122334456655 677877665544
No 209
>PLN02429 triosephosphate isomerase
Probab=24.23 E-value=1.4e+02 Score=33.33 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=33.4
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHH----HHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKE----VQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~----a~~~GL~Vilr~G 119 (807)
..++|++|++.|-+. |..++-.|.= -+.++.. |.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~ViiG-----HSERR~~f~E-----td~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVILG-----HSERRHVIGE-----KDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEeC-----ccccCCCCCc-----CHHHHHHHHHHHHHCcCEEEEEcC
Confidence 346889999988886 6555544432 3566655 9999999999998
No 210
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.17 E-value=3.5e+02 Score=29.15 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEE--EEeeCCcccccccCCCCCcccccC
Q 003612 61 WPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYV--CLRIGPFIEGEWGYGGLPFWLHDV 138 (807)
Q Consensus 61 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~V--ilr~GPyicaEw~~GG~P~Wl~~~ 138 (807)
-.+.++.++++|+++|++++- .|.--..+.....+.++|.+.++++++.+ +.--+||. ++
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---iN----------- 74 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---IN----------- 74 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee---ee-----------
Confidence 356899999999999999753 22211111112345788888899998864 44445553 11
Q ss_pred CCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 139 PGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 139 p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
+=+.|+.-.+...+.+++.+..-+
T Consensus 75 ----las~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 75 ----LASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred ----cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 223455555554555555555544
No 211
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.87 E-value=28 Score=35.33 Aligned_cols=65 Identities=31% Similarity=0.486 Sum_probs=43.5
Q ss_pred EEEEEEEeeCCCC---ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCC--eeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 44 KILFSGSIHYPRS---TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPG--QFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 44 ~~~~~g~~hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
..+-+|-..|.|+ .|-..++ -+.++|.+.+-.- .--+.| -|||-..-+|..|+++|+++||.+-|
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~Al 185 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVAL 185 (235)
T ss_pred eEEeccccchhhccCcCccccHH---HHHhcCCCEEEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHHh
Confidence 3445565556674 4444433 3567788865443 112333 58998888999999999999998866
No 212
>PRK14565 triosephosphate isomerase; Provisional
Probab=23.50 E-value=1.6e+02 Score=31.60 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++|++|++.+-+. |..++--|+=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~viiG-----HSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVILG-----HSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEEC-----cccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 457899999999996 66555444333 11223333889999999999998
No 213
>PRK08227 autoinducer 2 aldolase; Validated
Probab=23.41 E-value=73 Score=34.59 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=39.1
Q ss_pred hcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 59 QMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 59 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
+..--..+.+-++|.++|.++++|.- .+.-.-..|+.+..+.|++.||-||+
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v~~Gs------~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQVFIGS------EYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 33334466788999999999999972 11223345799999999999999887
No 214
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=23.40 E-value=68 Score=33.47 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCceEEEEEcCeeeeecc
Q 003612 622 SMGKGEAWVNGQSIGRYW 639 (807)
Q Consensus 622 g~gKG~v~VNG~nlGRYW 639 (807)
--.+|.|||||++|.|.=
T Consensus 53 ~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 53 RPTRGKILVNGHDLSRLK 70 (223)
T ss_pred cCCCceEEECCeeccccc
Confidence 356799999999999975
No 215
>PRK06703 flavodoxin; Provisional
Probab=23.34 E-value=3e+02 Score=26.58 Aligned_cols=100 Identities=10% Similarity=-0.005 Sum_probs=58.6
Q ss_pred ECCEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeecc---CchhHHHHHHHHHHcCcEEE
Q 003612 39 INGHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFS---GRRDLVRFIKEVQAQGLYVC 115 (807)
Q Consensus 39 ldG~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~~a~~~GL~Vi 115 (807)
+..-..++++...+-.-.+|..+.+-+..+++.-++...+.+|-. +|++ ...-.+.+-+..++.|..++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~--------g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS--------GDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc--------CCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 444455666554553444566777778888776666555555522 1221 11234556677788999887
Q ss_pred EeeCCcccccccCCCCCcccccCCCccccCCChhhHHHHHHHHHHHHHHHH
Q 003612 116 LRIGPFIEGEWGYGGLPFWLHDVPGIVFRSDNEPFKFHMKRYATMIVNMMK 166 (807)
Q Consensus 116 lr~GPyicaEw~~GG~P~Wl~~~p~~~~R~~d~~~~~~~~~~~~~i~~~l~ 166 (807)
.++= . ++...++..-++.+++|.++|++.++
T Consensus 118 ~~~~--~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 118 QEGL--K------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ccCe--E------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 6531 1 01111124567888889888887765
No 216
>PRK14567 triosephosphate isomerase; Provisional
Probab=23.27 E-value=1.6e+02 Score=31.83 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
-.++|++|++.|-+. |..++--|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yviiG-----HSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLIG-----HSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEEC-----cccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 346899999999996 66666555433 33466778889999999999998
No 217
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=23.26 E-value=1.2e+02 Score=32.67 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCC--cCCCCCCeeeccCchhHHHHHHHHHHcCcEEEE
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWN--LHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCL 116 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn--~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 116 (807)
++.+++||++|++.|...+--+ .+...-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6788999999999998875410 011111112222 355678899999998754
No 218
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=22.89 E-value=2.5e+02 Score=29.10 Aligned_cols=55 Identities=24% Similarity=0.193 Sum_probs=37.0
Q ss_pred hhcHHHHHHHHH-HcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 58 PQMWPRLIAKAK-EGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 58 ~~~W~~~l~k~k-a~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
++.+.+.+++.. +.|+-.|+.+-.. +.++.......+.++++|+|+|+-|++.+|
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDL-------GGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSE-------TTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred chhHHHHHHHhccccceeeeEecCCC-------CccccccHHHHHHHHHHHHhhccceeeecc
Confidence 455656666555 9999999987432 222333222236999999999999999987
No 219
>PRK14566 triosephosphate isomerase; Provisional
Probab=22.68 E-value=1.6e+02 Score=31.93 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 65 IAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 65 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++|++|++.|-+. |..++..|.=+ +..+..=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~viiG-----HSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVIIG-----HSERRRMYGET-SNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEEC-----cccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 457899999999996 66666555433 23466678899999999999998
No 220
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.47 E-value=1.5e+02 Score=23.74 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=38.6
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEE
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYV 114 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~V 114 (807)
|-...+.+.-+.+.|+|.+.++. +.........+-|.-. +.++.++..++.|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44566788889999999988875 3322233445555433 3889999999999765
No 221
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.42 E-value=1.7e+02 Score=31.65 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=46.2
Q ss_pred CCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHH-HcCcEEEEeeC
Q 003612 54 PRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQ-AQGLYVCLRIG 119 (807)
Q Consensus 54 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~-~~GL~Vilr~G 119 (807)
.+.+.+.-.+..+.+-++|++.|++..+....+...|..-|.....+.++.+..+ +.-+-+++|++
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 4568899999999999999999999987776555556666665444555555543 34444556665
No 222
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=22.26 E-value=1.2e+02 Score=32.38 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=33.3
Q ss_pred EECCEEEEEEEEEeeCCC-CChhcHHHHHHHHHHcCCCEEEE
Q 003612 38 IINGHRKILFSGSIHYPR-STPQMWPRLIAKAKEGGLDVVQT 78 (807)
Q Consensus 38 ~ldG~~~~~~~g~~hy~r-~~~~~W~~~l~k~ka~G~N~V~~ 78 (807)
.+.|+++.++.|..|+.. ....+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 468999999999999655 35566688899999999987644
No 223
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=21.84 E-value=1.3e+02 Score=31.95 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=46.9
Q ss_pred EEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 46 LFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 46 ~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
+.||...--++.....++-|+.++++||++|++. -|.-.-+- .-..++|+.|.++|+.|.-..|
T Consensus 77 ~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS---------~G~i~m~~-eek~~lIe~a~d~Gf~vlsEvG 140 (258)
T COG1809 77 FPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEIS---------NGTIPMST-EEKCRLIERAVDEGFMVLSEVG 140 (258)
T ss_pred cCCceEEEeehhcccHHHHHHHHHHcCccEEEec---------CCeeecch-HHHHHHHHHHHhcccEEehhhc
Confidence 3444443345667778899999999999999986 23332221 1278999999999999998887
No 224
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=21.39 E-value=1.6e+02 Score=31.42 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=39.2
Q ss_pred ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEE-EeeCCccccc
Q 003612 57 TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVC-LRIGPFIEGE 125 (807)
Q Consensus 57 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lr~GPyicaE 125 (807)
..+...+.++++|+.|+ -|+.+ .+|. ...++.|++.|...| |.+|||..+-
T Consensus 108 ~~~~l~~~i~~l~~~gI-~VSLF-----iDP~------------~~qi~~A~~~GAd~VELhTG~YA~a~ 159 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGI-EVSLF-----IDAD------------KDQISAAAEVGADRIEIHTGPYANAY 159 (237)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEE-----eCCC------------HHHHHHHHHhCcCEEEEechhhhcCC
Confidence 34667788999999998 44443 6666 677899999999877 9999998743
No 225
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=20.84 E-value=3.5e+02 Score=27.45 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=52.5
Q ss_pred EEeeCCCC-----ChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeee--ccCc-hhHHHHHHHHHHcCcEEEEeeCC
Q 003612 49 GSIHYPRS-----TPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFD--FSGR-RDLVRFIKEVQAQGLYVCLRIGP 120 (807)
Q Consensus 49 g~~hy~r~-----~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d--f~g~-~dl~~fl~~a~~~GL~Vilr~GP 120 (807)
|..||++. +.+..+.-++.++..++..--+ |--.|..++.+. .+-+ ..+.+|++..+++|.++++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~~i---~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKYGTV---WIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCceeEE---EEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 77898864 4577788888888865542111 222333233332 1111 24678999999999999998877
Q ss_pred ccc----ccc---cCCCCCcccccC
Q 003612 121 FIE----GEW---GYGGLPFWLHDV 138 (807)
Q Consensus 121 yic----aEw---~~GG~P~Wl~~~ 138 (807)
+-- +.. ++...|-|+...
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 521 111 145688899653
No 226
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=20.82 E-value=1e+02 Score=34.28 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeCCcc
Q 003612 60 MWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIGPFI 122 (807)
Q Consensus 60 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~GPyi 122 (807)
.--..|+.+|++|.+||- |..|- ...+|...+.+++++-|+.||.-.|=|+
T Consensus 39 ~~~~El~~~k~~Gg~tiV--------d~T~~----g~GRd~~~l~~is~~tGv~II~~TG~y~ 89 (308)
T PF02126_consen 39 AAVAELKEFKAAGGRTIV--------DATPI----GLGRDVEALREISRRTGVNIIASTGFYK 89 (308)
T ss_dssp HHHHHHHHHHHTTEEEEE--------E--SG----GGTB-HHHHHHHHHHHT-EEEEEEEE-S
T ss_pred HHHHHHHHHHHcCCCEEE--------ecCCc----ccCcCHHHHHHHHHHhCCeEEEeCCCCc
Confidence 334578999999988863 33331 2347999999999999999999999665
No 227
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=20.80 E-value=1.6e+02 Score=35.38 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCcCCCCCCee---------eccCchhHHHHHHHHHHcCcEEEEeeCCcccc
Q 003612 62 PRLIAKAKEGGLDVVQTLVFWNLHEPQPGQF---------DFSGRRDLVRFIKEVQAQGLYVCLRIGPFIEG 124 (807)
Q Consensus 62 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~---------df~g~~dl~~fl~~a~~~GL~Vilr~GPyica 124 (807)
.+.|+.+|++|+++|=+.=+=...++.-|-+ .|.-..|+.++++.+++.||++|+..-|=-++
T Consensus 43 ~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~ 114 (545)
T KOG0471|consen 43 TSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRS 114 (545)
T ss_pred hhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCC
Confidence 5789999999999998765444444433322 14455699999999999999999988754444
No 228
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.47 E-value=1.4e+02 Score=31.83 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHcCCCEEEEccc-CCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 60 MWPRLIAKAKEGGLDVVQTLVF-WNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 60 ~W~~~l~k~ka~G~N~V~~yv~-Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
..++.++.++++|...|.+.-. +......+-.++. -...+..+.+.|+++|+.+.+.+-
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRR-FIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccccccHHHHHHH-HHHHHHHHHHHHHHhCCEEEEeec
Confidence 4678889999999999986311 0000000111111 012478889999999999999874
No 229
>PRK00870 haloalkane dehalogenase; Provisional
Probab=20.44 E-value=1.9e+02 Score=31.08 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=41.0
Q ss_pred CEEEEEEEEEeeCCCCChhcHHHHHHHHHHcCCCEEEEcccCCcCCCCC---CeeeccCchhHHHHHHHHHHcCc
Q 003612 41 GHRKILFSGSIHYPRSTPQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQP---GQFDFSGRRDLVRFIKEVQAQGL 112 (807)
Q Consensus 41 G~~~~~~~g~~hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~---G~~df~g~~dl~~fl~~a~~~GL 112 (807)
|++++++.| +-.....|+..++.+.+.|+++|..-.+.-.....+ ..|+|+. ..+.+.++.++.++
T Consensus 46 ~~~lvliHG----~~~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~--~a~~l~~~l~~l~~ 114 (302)
T PRK00870 46 GPPVLLLHG----EPSWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYAR--HVEWMRSWFEQLDL 114 (302)
T ss_pred CCEEEEECC----CCCchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHH--HHHHHHHHHHHcCC
Confidence 567777777 234566799999989888999998877654333222 2355543 23333344455565
No 230
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.20 E-value=2.2e+02 Score=31.43 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=43.1
Q ss_pred CChhcHHHHHHHHHHcCCCEEEEccc----CCcCCC------CCCeee------ccCchhHHHHHHHHHHcCcEEEEe
Q 003612 56 STPQMWPRLIAKAKEGGLDVVQTLVF----WNLHEP------QPGQFD------FSGRRDLVRFIKEVQAQGLYVCLR 117 (807)
Q Consensus 56 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~~d------f~g~~dl~~fl~~a~~~GL~Vilr 117 (807)
.+.+..++.+..|...++|++..++. |.+.-+ +.|.+. +=-..|+..+++.|++.||.||..
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 37899999999999999999999985 543221 122221 111258999999999999999975
No 231
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.13 E-value=99 Score=33.10 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=39.0
Q ss_pred hhcHHHHHHHHHHcCCCEEEEcccCCcCCCCCCeeeccCchhHHHHHHHHHHcCcEEEEeeC
Q 003612 58 PQMWPRLIAKAKEGGLDVVQTLVFWNLHEPQPGQFDFSGRRDLVRFIKEVQAQGLYVCLRIG 119 (807)
Q Consensus 58 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr~G 119 (807)
.+.+++.++.++++|.++|.+...+....+.+..|.- -...+.++.+.|+++|+.+.+.+-
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 3567889999999999988763332111111111111 113477788888899999999874
Done!